Query 015158
Match_columns 412
No_of_seqs 182 out of 2273
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 03:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.8E-63 3.9E-68 405.9 30.3 379 34-412 22-400 (400)
2 PTZ00110 helicase; Provisional 100.0 1.4E-59 3.1E-64 448.3 42.1 376 35-411 126-510 (545)
3 PRK04837 ATP-dependent RNA hel 100.0 1.3E-59 2.9E-64 440.1 40.7 367 39-406 8-383 (423)
4 PRK11776 ATP-dependent RNA hel 100.0 7.3E-59 1.6E-63 439.8 42.3 363 39-403 4-367 (460)
5 PRK10590 ATP-dependent RNA hel 100.0 1E-58 2.2E-63 436.7 41.7 363 40-403 2-370 (456)
6 KOG0331 ATP-dependent RNA heli 100.0 2.6E-59 5.6E-64 423.6 35.8 370 40-410 92-473 (519)
7 PTZ00424 helicase 45; Provisio 100.0 1.7E-58 3.6E-63 432.2 42.2 382 30-411 19-400 (401)
8 KOG0330 ATP-dependent RNA heli 100.0 2.8E-59 6.1E-64 397.6 31.7 369 34-403 56-425 (476)
9 PRK11192 ATP-dependent RNA hel 100.0 5.1E-58 1.1E-62 431.6 43.0 364 40-403 2-370 (434)
10 PRK11634 ATP-dependent RNA hel 100.0 3.2E-58 6.9E-63 442.5 41.7 366 39-405 6-372 (629)
11 PLN00206 DEAD-box ATP-dependen 100.0 4.3E-58 9.4E-63 437.2 42.0 374 35-410 117-500 (518)
12 PRK04537 ATP-dependent RNA hel 100.0 1.2E-57 2.6E-62 436.4 41.1 363 40-403 10-382 (572)
13 COG0513 SrmB Superfamily II DN 100.0 2.2E-57 4.8E-62 429.1 41.4 369 34-402 24-398 (513)
14 PRK01297 ATP-dependent RNA hel 100.0 2.5E-56 5.3E-61 423.5 42.9 363 38-401 86-458 (475)
15 KOG0333 U5 snRNP-like RNA heli 100.0 9.3E-54 2E-58 376.8 33.8 367 31-398 237-637 (673)
16 KOG0326 ATP-dependent RNA heli 100.0 1.7E-54 3.8E-59 359.2 22.3 370 38-409 84-453 (459)
17 KOG0342 ATP-dependent RNA heli 100.0 6.6E-53 1.4E-57 369.3 32.3 356 38-394 81-446 (543)
18 KOG0338 ATP-dependent RNA heli 100.0 2.6E-53 5.6E-58 372.7 27.4 359 38-396 180-544 (691)
19 KOG0335 ATP-dependent RNA heli 100.0 1.2E-52 2.7E-57 373.6 30.3 372 38-410 73-469 (482)
20 KOG0327 Translation initiation 100.0 9.4E-53 2E-57 358.6 28.1 383 27-412 14-397 (397)
21 KOG0345 ATP-dependent RNA heli 100.0 8.9E-52 1.9E-56 359.9 33.3 356 40-400 5-375 (567)
22 KOG0336 ATP-dependent RNA heli 100.0 5.1E-52 1.1E-56 355.5 28.3 373 34-408 214-595 (629)
23 KOG0340 ATP-dependent RNA heli 100.0 2.9E-51 6.3E-56 344.8 29.6 366 38-404 6-380 (442)
24 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-50 3.2E-55 358.6 31.5 357 38-396 68-434 (758)
25 TIGR03817 DECH_helic helicase/ 100.0 7.8E-50 1.7E-54 391.9 37.2 361 33-403 9-406 (742)
26 KOG0339 ATP-dependent RNA heli 100.0 7.5E-50 1.6E-54 350.7 32.6 380 32-411 216-601 (731)
27 KOG0346 RNA helicase [RNA proc 100.0 6.7E-50 1.4E-54 345.4 28.6 361 39-400 19-425 (569)
28 KOG0332 ATP-dependent RNA heli 100.0 1.6E-49 3.5E-54 336.3 27.9 368 38-408 89-468 (477)
29 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-48 2.8E-53 369.1 34.6 324 56-395 6-343 (470)
30 PLN03137 ATP-dependent DNA hel 100.0 3.9E-48 8.5E-53 377.9 38.6 338 44-394 442-796 (1195)
31 KOG0348 ATP-dependent RNA heli 100.0 1.4E-48 3E-53 344.8 29.2 358 38-396 135-565 (708)
32 KOG0341 DEAD-box protein abstr 100.0 1.6E-49 3.4E-54 338.1 18.0 374 36-411 167-555 (610)
33 PRK11057 ATP-dependent DNA hel 100.0 3.6E-47 7.7E-52 368.2 36.8 328 50-394 13-352 (607)
34 TIGR01389 recQ ATP-dependent D 100.0 2.1E-46 4.6E-51 364.3 34.6 323 57-394 9-340 (591)
35 KOG0334 RNA helicase [RNA proc 100.0 1E-46 2.2E-51 359.1 29.4 382 30-411 356-746 (997)
36 PRK02362 ski2-like helicase; P 100.0 3.4E-46 7.4E-51 370.4 34.4 352 40-404 2-415 (737)
37 KOG4284 DEAD box protein [Tran 100.0 5.8E-46 1.2E-50 334.9 26.3 350 37-387 23-381 (980)
38 KOG0347 RNA helicase [RNA proc 100.0 7.3E-47 1.6E-51 335.0 20.0 362 36-399 178-584 (731)
39 COG1201 Lhr Lhr-like helicases 100.0 3.6E-45 7.8E-50 350.1 32.9 333 46-384 8-361 (814)
40 PRK13767 ATP-dependent helicas 100.0 2.4E-44 5.2E-49 360.2 36.5 334 46-384 18-397 (876)
41 COG0514 RecQ Superfamily II DN 100.0 6.4E-45 1.4E-49 336.4 29.2 327 57-396 13-348 (590)
42 KOG0337 ATP-dependent RNA heli 100.0 8E-46 1.7E-50 318.6 21.5 364 38-402 20-385 (529)
43 PRK00254 ski2-like helicase; P 100.0 1.3E-44 2.8E-49 358.3 33.4 349 40-400 2-401 (720)
44 KOG0350 DEAD-box ATP-dependent 100.0 7.1E-45 1.5E-49 319.1 26.7 360 38-398 126-553 (620)
45 KOG0344 ATP-dependent RNA heli 100.0 1.6E-44 3.5E-49 324.0 25.3 373 37-409 130-519 (593)
46 PRK01172 ski2-like helicase; P 100.0 7.4E-44 1.6E-48 351.6 30.7 345 40-401 2-392 (674)
47 TIGR00580 mfd transcription-re 100.0 1.9E-42 4.2E-47 342.8 36.9 318 49-385 439-770 (926)
48 PRK10917 ATP-dependent DNA hel 100.0 2.2E-41 4.9E-46 331.2 38.6 316 51-384 252-588 (681)
49 PRK10689 transcription-repair 100.0 1.5E-41 3.2E-46 343.5 38.2 318 49-385 589-919 (1147)
50 COG1111 MPH1 ERCC4-like helica 100.0 2E-41 4.3E-46 299.6 32.1 323 58-385 12-481 (542)
51 TIGR00643 recG ATP-dependent D 100.0 1.6E-40 3.5E-45 323.2 37.4 315 50-383 225-564 (630)
52 COG1202 Superfamily II helicas 100.0 1.2E-41 2.5E-46 303.8 23.7 340 39-387 194-555 (830)
53 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.1E-39 2.5E-44 314.2 34.7 315 57-382 12-388 (844)
54 PRK09751 putative ATP-dependen 100.0 6.4E-40 1.4E-44 333.3 33.6 321 81-405 1-407 (1490)
55 PHA02558 uvsW UvsW helicase; P 100.0 9E-40 2E-44 310.4 27.9 306 60-382 113-449 (501)
56 COG1204 Superfamily II helicas 100.0 1.4E-39 3E-44 316.1 26.0 331 45-382 15-405 (766)
57 TIGR00603 rad25 DNA repair hel 100.0 3.3E-38 7.3E-43 301.1 28.6 317 60-398 254-622 (732)
58 PHA02653 RNA helicase NPH-II; 100.0 9.5E-38 2.1E-42 299.4 30.8 316 63-394 166-523 (675)
59 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.3E-37 7.2E-42 302.6 33.3 308 63-388 4-339 (819)
60 COG1205 Distinct helicase fami 100.0 2.5E-37 5.5E-42 304.6 32.2 348 47-398 56-437 (851)
61 PRK09401 reverse gyrase; Revie 100.0 9.3E-37 2E-41 309.4 35.9 284 57-357 77-410 (1176)
62 PRK11664 ATP-dependent RNA hel 100.0 7.9E-37 1.7E-41 300.7 31.0 308 63-388 7-342 (812)
63 PRK13766 Hef nuclease; Provisi 100.0 5.7E-36 1.2E-40 301.2 37.7 322 60-386 14-480 (773)
64 TIGR01587 cas3_core CRISPR-ass 100.0 2.3E-37 5E-42 284.8 24.9 302 78-387 1-338 (358)
65 KOG0354 DEAD-box like helicase 100.0 6.1E-37 1.3E-41 286.8 27.4 337 46-388 47-532 (746)
66 KOG0329 ATP-dependent RNA heli 100.0 4.7E-38 1E-42 253.7 16.8 334 39-408 42-379 (387)
67 KOG0351 ATP-dependent DNA heli 100.0 1.7E-36 3.8E-41 296.4 28.3 331 53-395 256-602 (941)
68 KOG0352 ATP-dependent DNA heli 100.0 1.2E-36 2.6E-41 262.6 21.1 329 50-394 7-371 (641)
69 PRK14701 reverse gyrase; Provi 100.0 8.9E-36 1.9E-40 308.4 31.3 324 49-388 67-459 (1638)
70 KOG0353 ATP-dependent DNA heli 100.0 1.1E-35 2.5E-40 253.3 23.8 351 25-388 55-470 (695)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 1.5E-34 3.3E-39 262.9 30.7 289 65-370 1-357 (357)
72 COG1200 RecG RecG-like helicas 100.0 2.6E-34 5.6E-39 265.4 31.1 318 51-386 253-592 (677)
73 PRK12898 secA preprotein trans 100.0 2E-34 4.3E-39 272.2 30.2 317 58-387 101-588 (656)
74 TIGR01054 rgy reverse gyrase. 100.0 4.6E-34 1E-38 290.3 34.4 291 49-356 66-408 (1171)
75 KOG0952 DNA/RNA helicase MER3/ 100.0 6E-35 1.3E-39 277.1 25.8 329 56-393 105-499 (1230)
76 COG1061 SSL2 DNA or RNA helica 100.0 6.9E-35 1.5E-39 271.5 25.3 292 61-372 36-376 (442)
77 TIGR03714 secA2 accessory Sec 100.0 4.3E-34 9.4E-39 273.0 29.3 316 62-388 71-540 (762)
78 COG1197 Mfd Transcription-repa 100.0 3.4E-34 7.4E-39 278.9 26.8 321 56-395 590-929 (1139)
79 PRK09200 preprotein translocas 100.0 1.1E-33 2.4E-38 272.8 28.9 319 57-388 75-544 (790)
80 TIGR00963 secA preprotein tran 100.0 2.7E-33 5.7E-38 266.0 29.6 319 57-389 53-521 (745)
81 PRK04914 ATP-dependent helicas 100.0 4.2E-33 9.1E-38 275.4 31.1 336 61-401 152-619 (956)
82 KOG0947 Cytoplasmic exosomal R 100.0 2.2E-33 4.7E-38 263.7 25.2 310 55-383 292-721 (1248)
83 PRK11131 ATP-dependent RNA hel 100.0 6.7E-32 1.5E-36 270.5 28.7 303 63-388 76-414 (1294)
84 KOG0948 Nuclear exosomal RNA h 100.0 3.3E-33 7.2E-38 256.5 16.9 310 58-385 127-539 (1041)
85 PRK11448 hsdR type I restricti 100.0 1.3E-31 2.9E-36 270.5 28.6 303 61-374 413-802 (1123)
86 PRK05580 primosome assembly pr 100.0 7.3E-31 1.6E-35 256.2 32.7 312 61-390 144-554 (679)
87 KOG0349 Putative DEAD-box RNA 100.0 2.8E-32 6.1E-37 236.2 19.2 278 107-384 286-614 (725)
88 COG4581 Superfamily II RNA hel 100.0 1.5E-31 3.3E-36 260.4 25.9 318 53-384 112-536 (1041)
89 PRK09694 helicase Cas3; Provis 100.0 1.3E-29 2.7E-34 249.3 34.9 310 60-374 285-664 (878)
90 cd00268 DEADc DEAD-box helicas 100.0 1.1E-30 2.5E-35 221.0 24.0 200 41-240 1-202 (203)
91 COG4098 comFA Superfamily II D 100.0 6.4E-30 1.4E-34 215.5 27.6 306 61-389 97-420 (441)
92 TIGR00595 priA primosomal prot 100.0 3.6E-30 7.8E-35 242.6 28.2 304 80-401 1-402 (505)
93 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.7E-30 5.9E-35 260.0 28.4 308 63-389 69-408 (1283)
94 KOG0951 RNA helicase BRR2, DEA 100.0 4.1E-30 8.9E-35 247.6 24.2 334 47-389 297-706 (1674)
95 PLN03142 Probable chromatin-re 100.0 3.8E-29 8.2E-34 248.2 29.7 314 61-382 169-594 (1033)
96 PRK13104 secA preprotein trans 100.0 2E-28 4.3E-33 236.1 28.4 318 58-389 80-591 (896)
97 PRK12904 preprotein translocas 100.0 4.2E-28 9.2E-33 233.6 28.7 320 57-389 78-577 (830)
98 PRK12906 secA preprotein trans 100.0 2.5E-28 5.3E-33 234.3 25.3 319 57-388 77-556 (796)
99 COG4096 HsdR Type I site-speci 100.0 3.8E-28 8.3E-33 227.7 21.3 294 61-372 165-525 (875)
100 KOG0950 DNA polymerase theta/e 100.0 1.3E-27 2.8E-32 226.4 20.9 334 52-393 214-619 (1008)
101 COG1643 HrpA HrpA-like helicas 100.0 6.7E-27 1.4E-31 226.7 26.1 311 62-388 51-390 (845)
102 PRK12899 secA preprotein trans 100.0 5.9E-26 1.3E-30 218.8 29.6 147 43-194 66-228 (970)
103 KOG0922 DEAH-box RNA helicase 100.0 2.8E-26 6E-31 210.4 25.7 310 62-388 52-393 (674)
104 TIGR00348 hsdR type I site-spe 100.0 6.8E-26 1.5E-30 221.3 29.5 321 62-395 239-659 (667)
105 PRK13107 preprotein translocas 99.9 5.1E-26 1.1E-30 218.9 25.4 317 58-388 80-594 (908)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 2.4E-26 5.3E-31 188.8 17.7 163 63-226 1-166 (169)
107 COG1110 Reverse gyrase [DNA re 99.9 1.4E-24 3.1E-29 207.1 30.4 279 58-356 80-416 (1187)
108 KOG0385 Chromatin remodeling c 99.9 5.2E-25 1.1E-29 203.7 25.7 316 61-385 167-599 (971)
109 COG1203 CRISPR-associated heli 99.9 2E-25 4.3E-30 220.3 22.6 322 61-386 195-551 (733)
110 KOG1123 RNA polymerase II tran 99.9 1.1E-25 2.3E-30 198.9 17.3 312 58-391 299-659 (776)
111 KOG0923 mRNA splicing factor A 99.9 1.6E-24 3.4E-29 197.4 21.8 326 59-402 263-621 (902)
112 KOG0387 Transcription-coupled 99.9 1.3E-23 2.7E-28 195.4 24.0 320 61-388 205-661 (923)
113 KOG0924 mRNA splicing factor A 99.9 4.8E-24 1E-28 194.8 20.6 310 62-387 357-699 (1042)
114 COG1198 PriA Primosomal protei 99.9 1.7E-23 3.6E-28 200.3 25.1 325 61-402 198-625 (730)
115 TIGR01407 dinG_rel DnaQ family 99.9 1.7E-22 3.6E-27 203.8 32.6 332 47-385 232-814 (850)
116 KOG0920 ATP-dependent RNA heli 99.9 9.9E-23 2.1E-27 197.1 25.0 331 47-388 159-547 (924)
117 PRK12326 preprotein translocas 99.9 2.3E-22 5E-27 189.4 26.5 317 57-388 75-550 (764)
118 KOG0384 Chromodomain-helicase 99.9 6.4E-24 1.4E-28 205.5 14.2 345 28-387 343-813 (1373)
119 KOG0390 DNA repair protein, SN 99.9 1.8E-21 3.9E-26 185.4 29.5 315 61-382 238-702 (776)
120 KOG0925 mRNA splicing factor A 99.9 1.9E-22 4.1E-27 177.9 19.9 327 38-386 24-388 (699)
121 PRK12900 secA preprotein trans 99.9 2.8E-22 6E-27 194.2 22.7 124 263-388 581-714 (1025)
122 PRK13103 secA preprotein trans 99.9 5.9E-22 1.3E-26 191.2 24.2 316 58-388 80-594 (913)
123 COG4889 Predicted helicase [Ge 99.9 7E-24 1.5E-28 198.6 9.6 358 39-403 140-619 (1518)
124 KOG1000 Chromatin remodeling p 99.9 3.3E-21 7.2E-26 170.4 25.8 327 60-398 197-618 (689)
125 KOG0949 Predicted helicase, DE 99.9 1.1E-21 2.4E-26 185.9 24.1 158 62-224 512-673 (1330)
126 TIGR00631 uvrb excinuclease AB 99.9 2.1E-20 4.6E-25 180.8 30.6 129 265-394 427-562 (655)
127 COG0556 UvrB Helicase subunit 99.9 1.2E-20 2.7E-25 168.8 24.8 169 212-389 386-561 (663)
128 KOG0926 DEAH-box RNA helicase 99.9 1.1E-21 2.5E-26 182.3 18.2 308 67-385 262-704 (1172)
129 smart00487 DEXDc DEAD-like hel 99.9 7.6E-21 1.6E-25 160.7 21.0 187 56-243 3-191 (201)
130 KOG0392 SNF2 family DNA-depend 99.9 5.8E-21 1.2E-25 184.8 22.0 317 61-385 975-1454(1549)
131 PRK07246 bifunctional ATP-depe 99.9 1.7E-19 3.7E-24 179.6 31.3 320 55-385 240-783 (820)
132 PRK05298 excinuclease ABC subu 99.9 9.7E-20 2.1E-24 177.6 25.9 143 265-408 431-589 (652)
133 PRK12903 secA preprotein trans 99.9 1.1E-19 2.3E-24 174.0 24.9 316 58-388 76-542 (925)
134 KOG0389 SNF2 family DNA-depend 99.9 6.2E-21 1.3E-25 177.5 15.4 320 58-385 397-888 (941)
135 CHL00122 secA preprotein trans 99.8 1.3E-18 2.7E-23 167.6 25.5 319 57-389 73-635 (870)
136 PRK08074 bifunctional ATP-depe 99.8 7.7E-18 1.7E-22 170.8 32.4 109 277-385 751-893 (928)
137 KOG4150 Predicted ATP-dependen 99.8 1.5E-19 3.2E-24 162.7 17.4 351 55-408 280-665 (1034)
138 TIGR03117 cas_csf4 CRISPR-asso 99.8 2.2E-17 4.8E-22 157.4 31.3 114 269-385 462-616 (636)
139 cd00079 HELICc Helicase superf 99.8 7.7E-19 1.7E-23 137.7 14.3 118 264-381 12-131 (131)
140 cd00046 DEXDc DEAD-like helica 99.8 3.8E-18 8.2E-23 135.8 16.6 144 77-222 1-144 (144)
141 PRK12902 secA preprotein trans 99.8 3.6E-17 7.8E-22 157.5 25.1 274 58-345 83-506 (939)
142 KOG0953 Mitochondrial RNA heli 99.8 4.6E-18 9.9E-23 152.9 16.8 280 77-400 192-488 (700)
143 KOG0386 Chromatin remodeling c 99.8 1.5E-18 3.2E-23 165.7 14.3 319 61-386 394-837 (1157)
144 KOG4439 RNA polymerase II tran 99.8 7.5E-18 1.6E-22 155.2 18.1 105 277-381 745-852 (901)
145 PF04851 ResIII: Type III rest 99.8 1.1E-18 2.3E-23 145.5 11.3 150 62-223 4-183 (184)
146 COG0610 Type I site-specific r 99.8 7.9E-17 1.7E-21 162.5 25.7 285 77-372 274-636 (962)
147 COG1199 DinG Rad3-related DNA 99.8 1.2E-16 2.5E-21 158.7 25.4 127 269-399 471-633 (654)
148 TIGR00604 rad3 DNA repair heli 99.8 2E-16 4.4E-21 157.0 26.8 75 56-130 5-83 (705)
149 TIGR02562 cas3_yersinia CRISPR 99.8 1.2E-16 2.6E-21 156.3 22.5 335 51-390 398-899 (1110)
150 PF00271 Helicase_C: Helicase 99.8 4.1E-18 8.8E-23 120.0 8.3 78 296-373 1-78 (78)
151 KOG1002 Nucleotide excision re 99.7 1.2E-15 2.6E-20 135.6 23.7 108 278-385 638-749 (791)
152 PRK11747 dinG ATP-dependent DN 99.7 5.3E-15 1.1E-19 145.7 29.5 105 277-385 533-674 (697)
153 KOG0388 SNF2 family DNA-depend 99.7 1.5E-16 3.2E-21 146.9 16.1 121 265-385 1029-1154(1185)
154 PRK12901 secA preprotein trans 99.7 6.7E-16 1.5E-20 150.4 21.3 122 264-388 612-744 (1112)
155 KOG0391 SNF2 family DNA-depend 99.7 8.6E-16 1.9E-20 148.5 20.5 108 278-385 1276-1387(1958)
156 KOG0951 RNA helicase BRR2, DEA 99.7 2.4E-16 5.2E-21 153.7 15.9 309 62-391 1144-1500(1674)
157 PF02399 Herpes_ori_bp: Origin 99.7 6E-15 1.3E-19 140.9 23.5 293 76-387 49-390 (824)
158 PRK14873 primosome assembly pr 99.7 2.6E-14 5.7E-19 138.4 22.9 138 80-230 164-311 (665)
159 KOG1015 Transcription regulato 99.6 2.6E-14 5.6E-19 136.1 19.9 118 265-382 1127-1272(1567)
160 smart00490 HELICc helicase sup 99.6 1.2E-15 2.6E-20 108.8 8.5 81 293-373 2-82 (82)
161 COG0553 HepA Superfamily II DN 99.6 4.8E-13 1E-17 138.3 24.1 318 60-382 337-817 (866)
162 PF07652 Flavi_DEAD: Flaviviru 99.6 1.6E-14 3.4E-19 109.4 9.0 134 75-225 3-139 (148)
163 PF00176 SNF2_N: SNF2 family N 99.5 7.5E-14 1.6E-18 125.7 12.0 152 65-225 1-175 (299)
164 PF06862 DUF1253: Protein of u 99.5 7.7E-11 1.7E-15 107.5 29.0 293 102-394 32-424 (442)
165 COG0653 SecA Preprotein transl 99.4 2.3E-12 5E-17 124.3 15.7 316 58-387 78-547 (822)
166 smart00488 DEXDc2 DEAD-like he 99.3 2E-11 4.4E-16 107.8 11.5 73 57-130 5-84 (289)
167 smart00489 DEXDc3 DEAD-like he 99.3 2E-11 4.4E-16 107.8 11.5 73 57-130 5-84 (289)
168 PRK15483 type III restriction- 99.3 1.7E-09 3.8E-14 107.1 22.8 143 77-224 60-240 (986)
169 KOG1016 Predicted DNA helicase 99.2 4.3E-09 9.4E-14 99.3 19.9 106 279-384 720-846 (1387)
170 KOG1133 Helicase of the DEAD s 99.2 1.4E-07 3E-12 88.5 28.7 104 279-385 630-780 (821)
171 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.7E-09 5.9E-14 91.6 12.6 130 57-194 74-210 (266)
172 KOG2340 Uncharacterized conser 99.1 1.3E-08 2.8E-13 92.3 17.1 334 58-392 213-675 (698)
173 KOG1001 Helicase-like transcri 99.0 2.7E-09 6E-14 103.3 12.8 102 279-380 540-643 (674)
174 KOG0921 Dosage compensation co 99.0 1.8E-09 3.9E-14 103.4 10.9 310 65-387 382-776 (1282)
175 COG3587 Restriction endonuclea 98.9 4.1E-08 8.8E-13 94.2 16.4 72 327-398 482-566 (985)
176 PF13872 AAA_34: P-loop contai 98.9 1.8E-08 3.9E-13 86.8 12.6 155 62-224 38-222 (303)
177 KOG0952 DNA/RNA helicase MER3/ 98.9 2.5E-09 5.4E-14 104.2 5.2 259 62-330 928-1207(1230)
178 PF13307 Helicase_C_2: Helicas 98.8 1.5E-08 3.3E-13 82.1 8.1 112 271-385 3-150 (167)
179 PF13086 AAA_11: AAA domain; P 98.8 1.2E-08 2.5E-13 88.5 7.5 69 61-129 1-75 (236)
180 KOG1802 RNA helicase nonsense 98.7 3.5E-07 7.5E-12 85.5 14.9 85 52-142 401-485 (935)
181 KOG1131 RNA polymerase II tran 98.7 4.3E-06 9.4E-11 76.3 19.7 75 56-130 11-90 (755)
182 PF02562 PhoH: PhoH-like prote 98.7 2.7E-08 5.7E-13 82.1 4.5 146 60-221 3-155 (205)
183 TIGR00596 rad1 DNA repair prot 98.6 2.7E-06 5.8E-11 84.8 17.6 66 158-223 8-73 (814)
184 PF13604 AAA_30: AAA domain; P 98.6 2.3E-07 5E-12 77.3 8.7 122 62-221 2-130 (196)
185 PRK10536 hypothetical protein; 98.5 8.1E-07 1.8E-11 75.4 8.8 146 57-221 55-212 (262)
186 KOG1803 DNA helicase [Replicat 98.4 2.9E-06 6.2E-11 79.0 9.9 64 62-128 186-250 (649)
187 KOG1132 Helicase of the DEAD s 98.3 3.2E-06 7E-11 81.9 10.2 105 279-384 562-721 (945)
188 PF09848 DUF2075: Uncharacteri 98.3 3.4E-06 7.5E-11 77.4 9.9 108 78-208 3-117 (352)
189 PF13245 AAA_19: Part of AAA d 98.3 2.4E-06 5.2E-11 58.7 6.6 52 76-127 10-62 (76)
190 PF12340 DUF3638: Protein of u 98.3 1.7E-05 3.7E-10 66.2 12.4 152 40-196 4-187 (229)
191 PRK10875 recD exonuclease V su 98.3 8.8E-06 1.9E-10 79.1 11.8 141 63-221 154-301 (615)
192 TIGR00376 DNA helicase, putati 98.3 8.2E-06 1.8E-10 80.2 11.5 66 61-129 157-223 (637)
193 TIGR01447 recD exodeoxyribonuc 98.3 1.4E-05 3E-10 77.5 12.9 141 63-221 147-295 (586)
194 TIGR01448 recD_rel helicase, p 98.2 1.6E-05 3.5E-10 79.4 13.1 128 57-221 320-452 (720)
195 COG3421 Uncharacterized protei 98.2 2.5E-05 5.5E-10 72.7 12.8 135 81-224 2-167 (812)
196 smart00492 HELICc3 helicase su 98.1 2.1E-05 4.5E-10 61.4 8.8 73 312-384 31-137 (141)
197 COG1875 NYN ribonuclease and A 98.1 1.6E-05 3.4E-10 69.9 8.0 146 56-220 223-386 (436)
198 smart00491 HELICc2 helicase su 98.1 1.9E-05 4.1E-10 61.8 7.7 93 291-384 4-138 (142)
199 COG1419 FlhF Flagellar GTP-bin 98.0 0.00013 2.9E-09 65.8 13.2 133 76-235 203-337 (407)
200 PF00580 UvrD-helicase: UvrD/R 98.0 2.2E-05 4.8E-10 71.2 7.3 122 62-191 1-125 (315)
201 TIGR02768 TraA_Ti Ti-type conj 97.9 0.00023 5E-09 71.5 14.1 125 58-221 350-476 (744)
202 PRK12723 flagellar biosynthesi 97.9 0.00032 7E-09 64.4 12.9 122 77-226 175-301 (388)
203 KOG0298 DEAD box-containing he 97.8 5.2E-05 1.1E-09 76.5 8.1 145 76-225 374-553 (1394)
204 PF13401 AAA_22: AAA domain; P 97.8 5E-05 1.1E-09 58.9 6.5 37 183-222 89-125 (131)
205 PRK14722 flhF flagellar biosyn 97.8 0.0005 1.1E-08 62.6 12.7 170 32-228 74-263 (374)
206 PRK13889 conjugal transfer rel 97.8 0.00058 1.2E-08 69.9 14.2 126 57-221 343-470 (988)
207 PRK04296 thymidine kinase; Pro 97.8 6.5E-05 1.4E-09 62.3 6.3 36 77-115 3-38 (190)
208 KOG1805 DNA replication helica 97.7 0.00014 3E-09 71.7 8.9 123 61-194 669-809 (1100)
209 PRK08181 transposase; Validate 97.6 0.00061 1.3E-08 59.5 10.7 119 62-224 88-211 (269)
210 PF13871 Helicase_C_4: Helicas 97.6 0.00022 4.9E-09 61.6 7.4 65 318-382 51-124 (278)
211 PF00448 SRP54: SRP54-type pro 97.6 0.00025 5.5E-09 58.9 7.6 132 78-233 3-136 (196)
212 PRK11889 flhF flagellar biosyn 97.6 0.0014 3E-08 59.6 12.5 128 77-233 242-374 (436)
213 PRK13826 Dtr system oriT relax 97.6 0.0018 3.9E-08 66.9 14.6 137 46-221 367-505 (1102)
214 cd00009 AAA The AAA+ (ATPases 97.6 0.0012 2.6E-08 52.1 10.9 19 76-94 19-37 (151)
215 PRK06526 transposase; Provisio 97.5 0.00043 9.3E-09 60.0 8.5 111 72-226 94-205 (254)
216 PRK14974 cell division protein 97.5 0.0019 4.1E-08 58.2 12.7 130 77-233 141-275 (336)
217 KOG0383 Predicted helicase [Ge 97.5 1E-05 2.2E-10 78.1 -2.1 74 267-341 618-696 (696)
218 smart00382 AAA ATPases associa 97.5 0.00038 8.2E-09 54.6 7.2 41 76-119 2-42 (148)
219 PRK05703 flhF flagellar biosyn 97.4 0.0038 8.3E-08 58.5 13.1 127 76-231 221-351 (424)
220 PF03354 Terminase_1: Phage Te 97.4 0.00074 1.6E-08 64.7 8.6 150 64-221 1-163 (477)
221 KOG0989 Replication factor C, 97.4 0.0004 8.6E-09 59.9 5.7 44 179-223 127-170 (346)
222 PRK10919 ATP-dependent DNA hel 97.3 0.00053 1.2E-08 68.4 6.5 69 61-131 2-71 (672)
223 PHA02533 17 large terminase pr 97.3 0.0023 5E-08 61.6 10.4 122 62-195 60-183 (534)
224 KOG1513 Nuclear helicase MOP-3 97.2 0.00059 1.3E-08 65.9 6.0 157 61-222 264-454 (1300)
225 PRK11054 helD DNA helicase IV; 97.2 0.0013 2.9E-08 65.2 8.4 70 60-131 195-265 (684)
226 TIGR02760 TraI_TIGR conjugativ 97.2 0.052 1.1E-06 60.7 20.7 208 62-300 430-648 (1960)
227 PF05970 PIF1: PIF1-like helic 97.1 0.00069 1.5E-08 62.4 5.4 55 62-119 2-62 (364)
228 PRK05642 DNA replication initi 97.1 0.0016 3.5E-08 56.0 7.2 44 181-224 97-141 (234)
229 PRK00149 dnaA chromosomal repl 97.1 0.0043 9.3E-08 59.1 10.4 106 77-224 149-255 (450)
230 PF00308 Bac_DnaA: Bacterial d 97.1 0.002 4.3E-08 54.7 7.3 107 77-225 35-143 (219)
231 PRK14087 dnaA chromosomal repl 97.1 0.0036 7.8E-08 59.3 9.6 108 77-224 142-250 (450)
232 TIGR00362 DnaA chromosomal rep 97.1 0.004 8.8E-08 58.5 9.8 37 77-114 137-173 (405)
233 PRK12727 flagellar biosynthesi 97.0 0.026 5.6E-07 53.7 14.5 160 35-224 295-471 (559)
234 COG1435 Tdk Thymidine kinase [ 97.0 0.01 2.2E-07 48.1 10.2 104 77-209 5-109 (201)
235 COG4626 Phage terminase-like p 97.0 0.0043 9.2E-08 58.4 9.2 152 56-220 57-223 (546)
236 PRK06921 hypothetical protein; 97.0 0.016 3.4E-07 50.8 12.2 38 76-115 117-154 (266)
237 PRK14956 DNA polymerase III su 97.0 0.0029 6.2E-08 59.4 7.9 20 78-97 42-61 (484)
238 TIGR01075 uvrD DNA helicase II 97.0 0.0017 3.8E-08 65.6 6.9 71 60-132 3-74 (715)
239 TIGR01074 rep ATP-dependent DN 96.9 0.002 4.3E-08 64.8 6.8 68 62-131 2-70 (664)
240 cd01120 RecA-like_NTPases RecA 96.9 0.01 2.2E-07 47.8 9.8 38 79-119 2-39 (165)
241 PRK06893 DNA replication initi 96.9 0.0033 7.3E-08 53.9 7.2 45 181-225 91-137 (229)
242 PRK11773 uvrD DNA-dependent he 96.9 0.0021 4.5E-08 65.0 6.7 70 61-132 9-79 (721)
243 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0068 1.5E-07 51.9 9.1 20 76-95 38-57 (226)
244 PRK08727 hypothetical protein; 96.9 0.0058 1.3E-07 52.5 8.5 45 181-225 93-139 (233)
245 PRK12377 putative replication 96.8 0.012 2.6E-07 50.7 9.9 44 77-124 102-145 (248)
246 PF05127 Helicase_RecD: Helica 96.8 0.00076 1.6E-08 54.4 2.2 124 80-223 1-124 (177)
247 PHA03368 DNA packaging termina 96.8 0.0075 1.6E-07 58.2 9.1 134 77-223 255-391 (738)
248 PRK07952 DNA replication prote 96.8 0.022 4.9E-07 49.0 11.3 42 181-222 162-205 (244)
249 PRK08084 DNA replication initi 96.8 0.0045 9.8E-08 53.3 7.1 42 182-223 98-141 (235)
250 TIGR02785 addA_Gpos recombinat 96.8 0.0056 1.2E-07 65.5 9.2 123 62-192 2-126 (1232)
251 PRK14721 flhF flagellar biosyn 96.8 0.025 5.4E-07 52.6 12.3 131 76-233 191-322 (420)
252 PRK08116 hypothetical protein; 96.7 0.055 1.2E-06 47.5 13.7 41 77-121 115-155 (268)
253 PRK06731 flhF flagellar biosyn 96.7 0.056 1.2E-06 47.3 13.5 128 77-233 76-208 (270)
254 PRK07003 DNA polymerase III su 96.7 0.0074 1.6E-07 59.5 8.7 39 180-219 118-156 (830)
255 PF13177 DNA_pol3_delta2: DNA 96.7 0.0062 1.3E-07 49.0 7.1 42 180-222 101-142 (162)
256 TIGR01073 pcrA ATP-dependent D 96.7 0.0067 1.5E-07 61.6 8.9 71 60-132 3-74 (726)
257 COG2256 MGS1 ATPase related to 96.7 0.0039 8.5E-08 56.1 6.1 18 77-94 49-66 (436)
258 PRK06835 DNA replication prote 96.7 0.056 1.2E-06 48.9 13.6 44 76-123 183-226 (329)
259 COG1484 DnaC DNA replication p 96.7 0.011 2.4E-07 51.4 8.8 48 75-126 104-151 (254)
260 PRK08903 DnaA regulatory inact 96.7 0.012 2.5E-07 50.5 8.8 42 181-223 90-132 (227)
261 PRK00771 signal recognition pa 96.6 0.013 2.8E-07 55.0 9.4 131 77-233 96-228 (437)
262 cd01124 KaiC KaiC is a circadi 96.6 0.0081 1.8E-07 49.7 7.4 48 79-130 2-49 (187)
263 PRK14088 dnaA chromosomal repl 96.6 0.023 5E-07 53.8 11.2 38 77-115 131-168 (440)
264 PRK14723 flhF flagellar biosyn 96.6 0.053 1.2E-06 54.1 13.7 126 76-228 185-311 (767)
265 PLN03025 replication factor C 96.6 0.025 5.5E-07 51.2 10.9 40 181-222 99-138 (319)
266 TIGR02881 spore_V_K stage V sp 96.6 0.011 2.3E-07 52.0 8.2 18 77-94 43-60 (261)
267 PRK08769 DNA polymerase III su 96.6 0.017 3.6E-07 51.9 9.4 144 60-222 3-153 (319)
268 PF13173 AAA_14: AAA domain 96.6 0.033 7.2E-07 42.8 9.9 38 181-222 61-98 (128)
269 PRK12726 flagellar biosynthesi 96.6 0.027 5.9E-07 51.2 10.5 122 76-224 206-329 (407)
270 PRK09183 transposase/IS protei 96.6 0.022 4.7E-07 49.8 9.8 39 73-114 99-137 (259)
271 PRK14712 conjugal transfer nic 96.5 0.021 4.5E-07 61.5 11.0 62 61-123 835-900 (1623)
272 PRK11331 5-methylcytosine-spec 96.5 0.023 5.1E-07 52.9 10.1 33 62-94 180-212 (459)
273 PRK12402 replication factor C 96.5 0.029 6.3E-07 51.3 11.0 40 180-220 124-163 (337)
274 PRK12724 flagellar biosynthesi 96.5 0.063 1.4E-06 49.7 12.7 125 77-233 224-355 (432)
275 KOG2028 ATPase related to the 96.5 0.0098 2.1E-07 52.8 7.1 50 77-129 163-212 (554)
276 PRK07764 DNA polymerase III su 96.5 0.015 3.3E-07 59.0 9.4 39 180-219 119-157 (824)
277 PRK14964 DNA polymerase III su 96.5 0.02 4.4E-07 54.3 9.6 39 180-219 115-153 (491)
278 PRK12323 DNA polymerase III su 96.5 0.015 3.2E-07 56.6 8.7 41 180-221 123-163 (700)
279 TIGR01547 phage_term_2 phage t 96.5 0.011 2.3E-07 55.5 7.7 136 78-224 3-142 (396)
280 PRK14949 DNA polymerase III su 96.5 0.011 2.3E-07 59.6 7.9 38 180-218 118-155 (944)
281 PRK05707 DNA polymerase III su 96.4 0.0086 1.9E-07 54.1 6.8 37 62-98 4-44 (328)
282 PRK00411 cdc6 cell division co 96.4 0.021 4.5E-07 53.6 9.6 19 77-95 56-74 (394)
283 TIGR01425 SRP54_euk signal rec 96.4 0.089 1.9E-06 49.1 13.2 131 78-233 102-235 (429)
284 PHA03333 putative ATPase subun 96.4 0.056 1.2E-06 52.7 12.1 58 73-132 184-241 (752)
285 PRK14086 dnaA chromosomal repl 96.4 0.024 5.2E-07 55.0 9.8 106 77-224 315-422 (617)
286 cd01122 GP4d_helicase GP4d_hel 96.3 0.027 5.8E-07 49.8 9.3 55 72-129 26-80 (271)
287 PRK12422 chromosomal replicati 96.3 0.033 7.1E-07 52.7 10.3 36 77-115 142-177 (445)
288 COG2909 MalT ATP-dependent tra 96.3 0.017 3.6E-07 57.1 8.4 135 76-223 37-171 (894)
289 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.044 9.6E-07 43.5 9.4 130 79-228 5-144 (159)
290 PTZ00112 origin recognition co 96.3 0.061 1.3E-06 54.1 12.1 27 180-207 868-894 (1164)
291 PTZ00293 thymidine kinase; Pro 96.3 0.024 5.2E-07 47.2 8.2 40 76-118 4-43 (211)
292 PRK13709 conjugal transfer nic 96.3 0.037 8.1E-07 60.4 11.6 124 61-221 967-1099(1747)
293 PRK14958 DNA polymerase III su 96.3 0.02 4.4E-07 55.1 8.8 39 180-219 118-156 (509)
294 PF05876 Terminase_GpA: Phage 96.2 0.0071 1.5E-07 58.9 5.4 125 61-194 16-147 (557)
295 COG2805 PilT Tfp pilus assembl 96.2 0.0082 1.8E-07 52.0 5.0 58 30-106 97-154 (353)
296 PF03969 AFG1_ATPase: AFG1-lik 96.2 0.069 1.5E-06 48.9 11.2 45 181-226 127-172 (362)
297 PRK14960 DNA polymerase III su 96.2 0.023 5E-07 55.4 8.2 39 180-219 117-155 (702)
298 TIGR00064 ftsY signal recognit 96.1 0.13 2.7E-06 45.3 12.2 131 77-233 73-213 (272)
299 PRK14963 DNA polymerase III su 96.1 0.026 5.6E-07 54.2 8.5 24 78-102 38-61 (504)
300 PRK08533 flagellar accessory p 96.1 0.078 1.7E-06 45.5 10.7 53 74-130 22-74 (230)
301 COG0470 HolB ATPase involved i 96.1 0.041 8.9E-07 50.0 9.6 40 180-220 108-147 (325)
302 PRK07994 DNA polymerase III su 96.1 0.026 5.6E-07 55.5 8.5 38 180-218 118-155 (647)
303 COG1444 Predicted P-loop ATPas 96.1 0.065 1.4E-06 53.1 11.0 157 46-223 199-357 (758)
304 CHL00181 cbbX CbbX; Provisiona 96.1 0.043 9.3E-07 48.7 9.1 21 76-96 59-79 (287)
305 cd03115 SRP The signal recogni 96.1 0.22 4.8E-06 40.5 12.8 54 180-233 81-135 (173)
306 PRK14951 DNA polymerase III su 96.1 0.021 4.5E-07 56.0 7.5 39 180-219 123-161 (618)
307 PRK14955 DNA polymerase III su 96.0 0.038 8.3E-07 51.7 9.0 39 180-219 126-164 (397)
308 PRK05986 cob(I)alamin adenolsy 96.0 0.045 9.6E-07 44.8 8.1 141 75-228 21-164 (191)
309 PF05496 RuvB_N: Holliday junc 96.0 0.019 4.1E-07 48.0 6.0 17 77-93 51-67 (233)
310 PRK14952 DNA polymerase III su 96.0 0.027 5.9E-07 54.8 8.1 39 180-219 117-155 (584)
311 PRK14965 DNA polymerase III su 96.0 0.033 7.1E-07 54.6 8.7 39 180-219 118-156 (576)
312 PRK14961 DNA polymerase III su 96.0 0.027 5.8E-07 52.0 7.6 39 180-219 118-156 (363)
313 PRK14962 DNA polymerase III su 96.0 0.051 1.1E-06 51.8 9.6 19 78-96 38-56 (472)
314 PHA02544 44 clamp loader, smal 96.0 0.055 1.2E-06 49.0 9.6 39 181-219 100-138 (316)
315 PF14617 CMS1: U3-containing 9 96.0 0.026 5.7E-07 48.4 6.9 86 106-192 125-212 (252)
316 PRK06645 DNA polymerase III su 95.9 0.042 9.1E-07 52.6 8.9 20 77-96 44-63 (507)
317 PRK00440 rfc replication facto 95.9 0.1 2.2E-06 47.4 11.2 38 181-219 102-139 (319)
318 cd00984 DnaB_C DnaB helicase C 95.9 0.055 1.2E-06 46.9 9.1 40 74-115 11-50 (242)
319 COG3972 Superfamily I DNA and 95.9 0.048 1E-06 50.5 8.6 68 62-131 163-230 (660)
320 PRK13894 conjugal transfer ATP 95.9 0.015 3.3E-07 52.3 5.5 64 53-119 126-190 (319)
321 PF02572 CobA_CobO_BtuR: ATP:c 95.9 0.15 3.4E-06 41.0 10.6 137 79-227 6-144 (172)
322 PRK14957 DNA polymerase III su 95.9 0.074 1.6E-06 51.4 10.4 39 180-219 118-156 (546)
323 COG0593 DnaA ATPase involved i 95.9 0.075 1.6E-06 49.0 9.9 46 181-226 175-222 (408)
324 PRK09111 DNA polymerase III su 95.8 0.035 7.6E-07 54.4 8.0 39 180-219 131-169 (598)
325 PRK06995 flhF flagellar biosyn 95.8 0.095 2.1E-06 49.7 10.5 23 76-98 256-278 (484)
326 PRK08691 DNA polymerase III su 95.8 0.034 7.5E-07 54.7 7.7 39 180-219 118-156 (709)
327 COG4962 CpaF Flp pilus assembl 95.8 0.022 4.8E-07 50.6 5.8 58 58-119 154-212 (355)
328 PRK08939 primosomal protein Dn 95.8 0.11 2.4E-06 46.5 10.4 48 180-227 216-266 (306)
329 PRK13833 conjugal transfer pro 95.8 0.021 4.5E-07 51.3 5.8 57 62-119 129-186 (323)
330 PHA00729 NTP-binding motif con 95.7 0.13 2.9E-06 43.4 10.0 74 159-232 60-138 (226)
331 PRK06871 DNA polymerase III su 95.7 0.045 9.7E-07 49.3 7.7 138 62-222 3-147 (325)
332 PRK09376 rho transcription ter 95.7 0.031 6.8E-07 51.0 6.6 30 73-103 166-195 (416)
333 TIGR00767 rho transcription te 95.7 0.034 7.3E-07 51.0 6.8 31 72-103 164-194 (415)
334 TIGR00708 cobA cob(I)alamin ad 95.7 0.15 3.2E-06 41.2 9.6 135 78-228 7-146 (173)
335 PRK14969 DNA polymerase III su 95.6 0.054 1.2E-06 52.5 8.5 39 180-219 118-156 (527)
336 PRK13342 recombination factor 95.6 0.061 1.3E-06 50.7 8.7 18 77-94 37-54 (413)
337 PF00004 AAA: ATPase family as 95.6 0.01 2.2E-07 45.8 3.0 16 79-94 1-16 (132)
338 PRK05580 primosome assembly pr 95.6 0.15 3.2E-06 51.3 11.8 77 278-355 190-267 (679)
339 TIGR02928 orc1/cdc6 family rep 95.6 0.047 1E-06 50.6 7.8 18 77-94 41-58 (365)
340 PRK05896 DNA polymerase III su 95.6 0.036 7.8E-07 53.8 7.0 38 181-219 119-156 (605)
341 PRK10917 ATP-dependent DNA hel 95.6 0.1 2.3E-06 52.5 10.5 79 277-355 309-392 (681)
342 PRK14954 DNA polymerase III su 95.6 0.06 1.3E-06 52.9 8.5 39 180-219 126-164 (620)
343 TIGR02782 TrbB_P P-type conjug 95.6 0.057 1.2E-06 48.2 7.8 56 63-119 118-174 (299)
344 TIGR03015 pepcterm_ATPase puta 95.6 0.04 8.8E-07 48.6 6.9 33 62-94 24-61 (269)
345 PRK10867 signal recognition pa 95.6 0.28 6.1E-06 46.1 12.5 35 78-114 102-136 (433)
346 PRK04195 replication factor C 95.5 0.11 2.3E-06 50.2 10.0 19 76-94 39-57 (482)
347 PRK14959 DNA polymerase III su 95.5 0.05 1.1E-06 53.1 7.6 22 77-98 39-60 (624)
348 PRK05563 DNA polymerase III su 95.5 0.072 1.6E-06 52.1 8.7 37 180-217 118-154 (559)
349 PRK11823 DNA repair protein Ra 95.5 0.092 2E-06 49.8 9.1 51 76-130 80-130 (446)
350 PRK10416 signal recognition pa 95.5 0.44 9.5E-06 43.0 13.0 54 180-233 195-255 (318)
351 PRK13341 recombination factor 95.4 0.077 1.7E-06 53.3 8.9 18 77-94 53-70 (725)
352 cd01128 rho_factor Transcripti 95.4 0.039 8.5E-07 47.7 5.9 32 71-103 11-42 (249)
353 TIGR02760 TraI_TIGR conjugativ 95.4 0.066 1.4E-06 59.9 9.0 61 61-123 1019-1084(1960)
354 PF05621 TniB: Bacterial TniB 95.3 0.11 2.4E-06 45.7 8.5 17 77-93 62-78 (302)
355 COG3973 Superfamily I DNA and 95.3 0.054 1.2E-06 51.6 6.9 82 48-130 192-283 (747)
356 PF01695 IstB_IS21: IstB-like 95.3 0.029 6.2E-07 45.9 4.6 47 72-122 43-89 (178)
357 PRK08451 DNA polymerase III su 95.3 0.11 2.4E-06 50.0 9.2 39 180-219 116-154 (535)
358 PRK06067 flagellar accessory p 95.3 0.28 6.1E-06 42.2 11.0 51 76-130 25-75 (234)
359 PF05729 NACHT: NACHT domain 95.3 0.13 2.8E-06 41.3 8.6 21 78-98 2-22 (166)
360 PRK12608 transcription termina 95.3 0.13 2.9E-06 46.8 9.1 36 67-103 121-159 (380)
361 TIGR00678 holB DNA polymerase 95.2 0.074 1.6E-06 44.1 7.0 39 180-219 95-133 (188)
362 cd01121 Sms Sms (bacterial rad 95.2 0.13 2.9E-06 47.3 9.2 51 76-130 82-132 (372)
363 PRK06090 DNA polymerase III su 95.2 0.084 1.8E-06 47.4 7.7 138 62-222 4-148 (319)
364 TIGR00595 priA primosomal prot 95.2 0.15 3.3E-06 49.2 10.0 77 278-355 25-102 (505)
365 PRK06620 hypothetical protein; 95.2 0.041 9E-07 46.5 5.5 39 181-223 85-123 (214)
366 KOG0298 DEAD box-containing he 95.2 0.036 7.8E-07 57.0 5.8 99 277-380 1220-1319(1394)
367 PF02456 Adeno_IVa2: Adenoviru 95.2 0.079 1.7E-06 46.2 7.0 41 78-119 89-129 (369)
368 TIGR00959 ffh signal recogniti 95.2 0.25 5.4E-06 46.4 10.9 22 78-99 101-122 (428)
369 PRK07471 DNA polymerase III su 95.2 0.08 1.7E-06 48.7 7.5 43 179-222 139-181 (365)
370 PHA00012 I assembly protein 95.1 0.43 9.2E-06 42.4 11.4 26 79-104 4-29 (361)
371 KOG0742 AAA+-type ATPase [Post 95.1 0.072 1.6E-06 48.3 6.8 17 77-93 385-401 (630)
372 PRK07993 DNA polymerase III su 95.1 0.064 1.4E-06 48.7 6.6 139 62-222 3-148 (334)
373 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.23 4.9E-06 42.6 9.9 51 75-129 19-69 (229)
374 PRK06964 DNA polymerase III su 95.1 0.064 1.4E-06 48.7 6.6 42 180-222 131-172 (342)
375 TIGR03499 FlhF flagellar biosy 95.1 0.058 1.3E-06 47.8 6.3 67 34-100 136-218 (282)
376 COG2109 BtuR ATP:corrinoid ade 95.1 0.2 4.4E-06 40.5 8.4 138 78-229 30-172 (198)
377 COG1110 Reverse gyrase [DNA re 95.0 0.085 1.8E-06 53.4 7.6 73 265-337 112-190 (1187)
378 KOG1132 Helicase of the DEAD s 95.0 0.81 1.7E-05 45.9 14.0 74 56-130 17-133 (945)
379 PRK09112 DNA polymerase III su 95.0 0.14 3E-06 46.9 8.5 42 180-222 140-181 (351)
380 COG0552 FtsY Signal recognitio 95.0 0.71 1.5E-05 41.1 12.4 132 78-233 141-280 (340)
381 COG1485 Predicted ATPase [Gene 95.0 0.34 7.4E-06 43.3 10.4 110 77-227 66-176 (367)
382 COG1474 CDC6 Cdc6-related prot 95.0 0.45 9.8E-06 43.8 11.8 29 181-210 123-151 (366)
383 PRK05973 replicative DNA helic 94.9 0.072 1.6E-06 45.5 6.1 58 69-130 57-114 (237)
384 TIGR02397 dnaX_nterm DNA polym 94.9 0.17 3.6E-06 46.8 9.1 18 77-94 37-54 (355)
385 PRK08699 DNA polymerase III su 94.9 0.18 4E-06 45.6 8.9 147 62-222 2-153 (325)
386 PRK14950 DNA polymerase III su 94.8 0.16 3.5E-06 50.1 9.1 38 180-218 119-156 (585)
387 PRK14948 DNA polymerase III su 94.8 0.11 2.4E-06 51.3 7.9 38 180-218 120-157 (620)
388 COG1198 PriA Primosomal protei 94.8 0.12 2.5E-06 51.6 7.9 101 252-353 217-320 (730)
389 PRK07414 cob(I)yrinic acid a,c 94.8 0.65 1.4E-05 37.6 10.8 137 78-228 23-164 (178)
390 KOG0991 Replication factor C, 94.7 0.088 1.9E-06 44.0 5.9 36 180-216 112-147 (333)
391 PRK14873 primosome assembly pr 94.7 0.19 4.1E-06 50.0 9.2 92 263-355 171-266 (665)
392 TIGR00643 recG ATP-dependent D 94.6 0.23 4.9E-06 49.7 9.8 79 277-355 283-366 (630)
393 PF01443 Viral_helicase1: Vira 94.6 0.045 9.7E-07 47.1 4.3 15 79-93 1-15 (234)
394 COG2804 PulE Type II secretory 94.6 0.048 1.1E-06 51.1 4.5 42 62-104 242-285 (500)
395 TIGR03877 thermo_KaiC_1 KaiC d 94.6 0.069 1.5E-06 46.1 5.3 51 76-130 21-71 (237)
396 PRK04841 transcriptional regul 94.5 0.12 2.5E-06 54.4 7.9 41 183-223 123-163 (903)
397 PRK06904 replicative DNA helic 94.5 0.29 6.4E-06 46.8 9.8 117 73-194 218-347 (472)
398 PF03796 DnaB_C: DnaB-like hel 94.5 0.1 2.2E-06 45.7 6.3 143 75-222 18-180 (259)
399 KOG0733 Nuclear AAA ATPase (VC 94.5 0.11 2.5E-06 49.6 6.7 98 181-298 604-712 (802)
400 TIGR03600 phage_DnaB phage rep 94.5 0.37 8E-06 45.6 10.4 118 72-195 190-319 (421)
401 PF03237 Terminase_6: Terminas 94.5 1.1 2.4E-05 41.5 13.6 145 80-237 1-154 (384)
402 PRK13851 type IV secretion sys 94.4 0.064 1.4E-06 48.7 4.9 43 73-119 159-201 (344)
403 PRK07940 DNA polymerase III su 94.4 0.18 3.9E-06 46.9 7.9 41 180-221 116-156 (394)
404 PRK14971 DNA polymerase III su 94.3 0.27 5.7E-06 48.7 9.2 39 180-219 120-158 (614)
405 KOG0738 AAA+-type ATPase [Post 94.3 0.25 5.3E-06 44.7 8.0 62 32-93 176-262 (491)
406 PF06745 KaiC: KaiC; InterPro 94.3 0.058 1.3E-06 46.2 4.2 51 76-130 19-70 (226)
407 PHA00350 putative assembly pro 94.3 0.37 8.1E-06 44.5 9.5 26 79-104 4-30 (399)
408 TIGR02525 plasmid_TraJ plasmid 94.2 0.1 2.3E-06 47.9 5.9 40 75-115 148-187 (372)
409 KOG0739 AAA+-type ATPase [Post 94.2 1.1 2.4E-05 39.2 11.3 129 71-245 156-301 (439)
410 COG5008 PilU Tfp pilus assembl 94.1 0.069 1.5E-06 45.5 4.1 27 76-103 127-153 (375)
411 PRK06647 DNA polymerase III su 94.1 0.18 3.8E-06 49.3 7.4 39 180-219 118-156 (563)
412 PF06733 DEAD_2: DEAD_2; Inte 94.0 0.025 5.5E-07 46.2 1.4 43 154-196 116-160 (174)
413 COG0210 UvrD Superfamily I DNA 94.0 0.14 3.1E-06 51.6 6.9 70 61-132 2-72 (655)
414 TIGR02524 dot_icm_DotB Dot/Icm 94.0 0.09 2E-06 48.2 5.0 27 75-102 133-159 (358)
415 KOG0732 AAA+-type ATPase conta 93.9 0.12 2.5E-06 53.0 5.9 57 36-93 259-316 (1080)
416 TIGR00580 mfd transcription-re 93.9 0.23 5E-06 51.4 8.2 78 277-354 499-581 (926)
417 PRK09087 hypothetical protein; 93.9 0.24 5.2E-06 42.3 7.1 38 183-222 89-126 (226)
418 PRK08506 replicative DNA helic 93.9 0.76 1.6E-05 44.1 11.2 115 73-194 189-315 (472)
419 PRK13900 type IV secretion sys 93.7 0.087 1.9E-06 47.7 4.3 42 74-119 158-199 (332)
420 cd01393 recA_like RecA is a b 93.6 0.3 6.4E-06 41.8 7.3 42 76-117 19-63 (226)
421 PRK08058 DNA polymerase III su 93.5 0.28 6.1E-06 44.6 7.4 41 180-221 109-149 (329)
422 KOG0737 AAA+-type ATPase [Post 93.5 0.73 1.6E-05 41.5 9.5 59 36-94 86-145 (386)
423 PRK14953 DNA polymerase III su 93.4 0.76 1.6E-05 44.2 10.3 37 180-217 118-154 (486)
424 TIGR01243 CDC48 AAA family ATP 93.4 0.41 8.8E-06 48.9 8.9 19 75-93 211-229 (733)
425 PRK10689 transcription-repair 93.3 0.34 7.4E-06 51.5 8.5 78 277-354 648-730 (1147)
426 KOG1513 Nuclear helicase MOP-3 93.3 0.068 1.5E-06 52.4 3.0 55 320-374 849-911 (1300)
427 TIGR00614 recQ_fam ATP-depende 93.3 1.7 3.8E-05 41.8 12.7 77 278-354 51-135 (470)
428 PRK06305 DNA polymerase III su 93.3 0.77 1.7E-05 43.7 10.1 39 180-219 120-158 (451)
429 COG0541 Ffh Signal recognition 93.1 1.6 3.5E-05 40.4 11.2 133 78-233 102-235 (451)
430 PRK08840 replicative DNA helic 93.1 1 2.2E-05 43.0 10.5 120 70-194 211-342 (464)
431 PHA03372 DNA packaging termina 93.0 0.99 2.2E-05 43.7 10.1 133 77-222 203-337 (668)
432 KOG0780 Signal recognition par 93.0 0.53 1.1E-05 42.6 7.8 133 78-233 103-236 (483)
433 PRK07399 DNA polymerase III su 93.0 0.59 1.3E-05 42.1 8.4 60 160-222 104-163 (314)
434 PF12846 AAA_10: AAA-like doma 93.0 0.12 2.6E-06 46.4 4.1 38 76-116 1-38 (304)
435 PRK07133 DNA polymerase III su 93.0 0.44 9.6E-06 47.6 8.1 39 180-219 117-155 (725)
436 TIGR02639 ClpA ATP-dependent C 93.0 0.77 1.7E-05 46.8 10.2 19 77-95 204-222 (731)
437 PF00437 T2SE: Type II/IV secr 93.0 0.12 2.6E-06 45.6 4.0 43 74-119 125-167 (270)
438 COG1132 MdlB ABC-type multidru 92.9 0.82 1.8E-05 45.2 10.1 37 73-112 352-388 (567)
439 TIGR02868 CydC thiol reductant 92.9 0.92 2E-05 44.5 10.4 21 73-93 358-378 (529)
440 PRK09165 replicative DNA helic 92.9 0.47 1E-05 45.8 8.1 117 74-194 215-354 (497)
441 PRK04328 hypothetical protein; 92.9 0.2 4.4E-06 43.5 5.2 51 76-130 23-73 (249)
442 TIGR00416 sms DNA repair prote 92.9 0.56 1.2E-05 44.7 8.5 51 76-130 94-144 (454)
443 COG1219 ClpX ATP-dependent pro 92.9 0.079 1.7E-06 46.5 2.5 18 76-93 97-114 (408)
444 COG1200 RecG RecG-like helicas 92.8 1 2.2E-05 44.1 10.0 78 277-354 310-392 (677)
445 cd01130 VirB11-like_ATPase Typ 92.7 0.12 2.6E-06 42.7 3.4 39 62-101 10-49 (186)
446 cd01129 PulE-GspE PulE/GspE Th 92.7 0.25 5.3E-06 43.4 5.5 51 63-116 65-117 (264)
447 KOG0058 Peptide exporter, ABC 92.6 0.17 3.6E-06 49.6 4.5 41 180-221 621-661 (716)
448 PRK07004 replicative DNA helic 92.5 0.6 1.3E-05 44.6 8.2 143 73-221 210-373 (460)
449 CHL00176 ftsH cell division pr 92.5 0.66 1.4E-05 46.1 8.7 17 77-93 217-233 (638)
450 PRK05748 replicative DNA helic 92.5 0.76 1.6E-05 43.9 8.9 145 73-222 200-365 (448)
451 COG1074 RecB ATP-dependent exo 92.3 0.23 5.1E-06 53.0 5.7 55 75-129 15-71 (1139)
452 cd01126 TraG_VirD4 The TraG/Tr 92.3 0.19 4.1E-06 47.0 4.5 56 78-142 1-56 (384)
453 PF01637 Arch_ATPase: Archaeal 92.3 0.16 3.6E-06 43.4 3.9 56 163-222 104-165 (234)
454 KOG2227 Pre-initiation complex 92.3 1.1 2.4E-05 41.7 9.1 49 76-125 175-224 (529)
455 TIGR00665 DnaB replicative DNA 92.2 0.86 1.9E-05 43.4 9.0 143 73-222 192-355 (434)
456 PRK11034 clpA ATP-dependent Cl 92.2 1.6 3.4E-05 44.4 11.1 20 76-95 207-226 (758)
457 PRK14970 DNA polymerase III su 92.2 1.2 2.6E-05 41.3 9.8 19 77-95 40-58 (367)
458 KOG0701 dsRNA-specific nucleas 92.2 0.067 1.4E-06 57.2 1.5 94 279-372 293-398 (1606)
459 TIGR00635 ruvB Holliday juncti 92.2 0.13 2.9E-06 46.3 3.3 18 77-94 31-48 (305)
460 KOG0344 ATP-dependent RNA heli 92.1 3.1 6.7E-05 39.9 11.9 99 84-192 365-467 (593)
461 KOG1806 DEAD box containing he 92.0 0.3 6.5E-06 49.5 5.6 70 60-130 737-806 (1320)
462 TIGR03878 thermo_KaiC_2 KaiC d 92.0 0.2 4.4E-06 43.8 4.1 37 76-115 36-72 (259)
463 cd01123 Rad51_DMC1_radA Rad51_ 91.9 0.57 1.2E-05 40.3 6.8 42 76-117 19-63 (235)
464 KOG0734 AAA+-type ATPase conta 91.9 1.1 2.4E-05 42.5 8.7 45 181-225 396-450 (752)
465 COG0513 SrmB Superfamily II DN 91.9 2.1 4.6E-05 41.6 11.2 113 281-398 102-227 (513)
466 PRK08006 replicative DNA helic 91.9 1.5 3.2E-05 42.1 10.0 145 72-221 220-385 (471)
467 TIGR02640 gas_vesic_GvpN gas v 91.8 0.17 3.7E-06 44.3 3.4 28 67-94 12-39 (262)
468 KOG0730 AAA+-type ATPase [Post 91.8 0.99 2.2E-05 43.9 8.5 57 34-93 426-485 (693)
469 PRK10436 hypothetical protein; 91.8 0.31 6.7E-06 46.3 5.3 40 62-102 202-243 (462)
470 cd00544 CobU Adenosylcobinamid 91.8 1.2 2.6E-05 36.0 8.0 45 79-129 2-46 (169)
471 KOG1807 Helicases [Replication 91.7 0.61 1.3E-05 46.0 7.1 67 62-128 379-448 (1025)
472 PRK08760 replicative DNA helic 91.7 0.88 1.9E-05 43.7 8.3 115 73-194 226-352 (476)
473 PF02534 T4SS-DNA_transf: Type 91.6 0.34 7.4E-06 46.6 5.6 49 77-130 45-93 (469)
474 TIGR02784 addA_alphas double-s 91.6 0.39 8.4E-06 51.7 6.4 55 76-130 10-64 (1141)
475 TIGR02237 recomb_radB DNA repa 91.4 0.3 6.4E-06 41.2 4.4 38 76-116 12-49 (209)
476 TIGR02880 cbbX_cfxQ probable R 91.4 0.38 8.2E-06 42.7 5.2 19 76-94 58-76 (284)
477 PF13555 AAA_29: P-loop contai 91.4 0.16 3.5E-06 33.0 2.1 18 76-93 23-40 (62)
478 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.4 0.3 6.4E-06 41.1 4.4 45 73-117 35-79 (205)
479 TIGR03880 KaiC_arch_3 KaiC dom 91.4 0.48 1E-05 40.4 5.7 51 76-130 16-66 (224)
480 PF08423 Rad51: Rad51; InterP 91.3 0.4 8.7E-06 41.8 5.1 42 78-119 40-84 (256)
481 COG0467 RAD55 RecA-superfamily 91.2 0.29 6.4E-06 42.9 4.3 52 75-130 22-73 (260)
482 PF13481 AAA_25: AAA domain; P 91.1 0.56 1.2E-05 38.9 5.8 57 75-132 31-94 (193)
483 TIGR02533 type_II_gspE general 91.1 0.37 7.9E-06 46.3 5.0 40 62-102 226-267 (486)
484 COG5410 Uncharacterized protei 91.1 0.79 1.7E-05 38.1 6.1 66 67-132 48-115 (305)
485 KOG2543 Origin recognition com 90.9 1.8 3.9E-05 39.3 8.7 142 62-225 10-161 (438)
486 PRK13897 type IV secretion sys 90.9 0.52 1.1E-05 46.4 5.9 57 77-142 159-215 (606)
487 PRK14701 reverse gyrase; Provi 90.8 2.1 4.5E-05 47.4 10.9 61 277-337 121-187 (1638)
488 PRK05636 replicative DNA helic 90.8 1.5 3.3E-05 42.4 8.8 114 75-194 264-388 (505)
489 PRK06321 replicative DNA helic 90.7 1.7 3.7E-05 41.6 9.1 112 76-194 226-349 (472)
490 TIGR00763 lon ATP-dependent pr 90.6 1.7 3.6E-05 44.8 9.6 18 76-93 347-364 (775)
491 COG1197 Mfd Transcription-repa 90.6 1.3 2.9E-05 46.1 8.6 76 277-352 642-722 (1139)
492 TIGR02655 circ_KaiC circadian 90.6 0.45 9.6E-06 45.9 5.2 51 76-130 263-313 (484)
493 COG2812 DnaX DNA polymerase II 90.5 0.39 8.5E-06 45.9 4.6 41 179-220 117-157 (515)
494 PF01935 DUF87: Domain of unkn 90.3 0.37 8E-06 41.3 4.1 41 76-118 23-63 (229)
495 TIGR03346 chaperone_ClpB ATP-d 90.3 1.7 3.6E-05 45.3 9.3 19 77-95 195-213 (852)
496 cd01394 radB RadB. The archaea 90.3 0.44 9.5E-06 40.5 4.4 36 76-114 19-54 (218)
497 TIGR03345 VI_ClpV1 type VI sec 90.2 0.85 1.9E-05 47.2 7.1 132 67-231 197-333 (852)
498 PRK05564 DNA polymerase III su 90.2 2 4.3E-05 38.9 8.8 39 180-219 92-130 (313)
499 PF10593 Z1: Z1 domain; Inter 90.2 1.4 3.1E-05 37.9 7.4 93 292-390 101-198 (239)
500 TIGR02012 tigrfam_recA protein 90.2 0.61 1.3E-05 41.9 5.3 43 76-121 55-97 (321)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-63 Score=405.89 Aligned_cols=379 Identities=68% Similarity=1.064 Sum_probs=364.9
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEE
Q 015158 34 YDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 113 (412)
Q Consensus 34 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 113 (412)
.-.+..+|+++++.+++.+.+++.||..|...|+.|++++++|++++.++..|+|||.++...++..+.-.....+++++
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lil 101 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALIL 101 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999988888877766666789999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 114 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
.||++|+.|..+.+..++...++.+..+.|+.+...+.+....+.+++.+||++.+.+.++..+..+.+.++|+||++++
T Consensus 102 sPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDem 181 (400)
T KOG0328|consen 102 SPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEM 181 (400)
T ss_pred cChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHH
Confidence 99999999999999999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY 273 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (412)
++.+|..++..++..+|++.|++++|||++.+..+....+..+|+.+...+.+...++++.++..+..++++.+.|.+++
T Consensus 182 L~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLY 261 (400)
T KOG0328|consen 182 LNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLY 261 (400)
T ss_pred HHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEc
Q 015158 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 274 ~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~ 353 (412)
........+|||+++..+..+.+.+++.+..+...||+|..++|++++.+|++|+.+||++|+.+.+|+|+|.++.||.+
T Consensus 262 d~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNY 341 (400)
T KOG0328|consen 262 DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINY 341 (400)
T ss_pred hhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEec
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhcC
Q 015158 354 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 412 (412)
Q Consensus 354 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (412)
++|.+...|++|+||.||.|..|.++-|+...+.+.++.++++|+..+.++|.++.+++
T Consensus 342 DLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 342 DLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred CCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999998874
No 2
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.4e-59 Score=448.33 Aligned_cols=376 Identities=33% Similarity=0.517 Sum_probs=332.2
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----CCcee
Q 015158 35 DEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVECQ 109 (412)
Q Consensus 35 ~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~ 109 (412)
..+...|+.+++++.+.+.|...+|.+|+++|.++++.+++|+++++++|||||||++|+++++..+... ..++.
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~ 205 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPI 205 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcE
Confidence 3456789999999999999999999999999999999999999999999999999999999988776432 23568
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeC
Q 015158 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDE 189 (412)
Q Consensus 110 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE 189 (412)
+||++||++|+.|+.+.+..+....++.+..++|+.........+..+++|+|+||++|..++......+.++++||+||
T Consensus 206 ~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDE 285 (545)
T PTZ00110 206 VLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDE 285 (545)
T ss_pred EEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeeh
Confidence 99999999999999999999988888888899998887766666777889999999999999988877888999999999
Q ss_pred CchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcC-CCeEEEecCCc-cccCCceEEEEEeccchhhHH
Q 015158 190 ADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDE-LTLEGIKQFHVNVEKEEWKLE 267 (412)
Q Consensus 190 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (412)
||++.+++|...+..++..+++..+++++|||++.+.......++. .+..+...... .....+.+.+..+.. ..+..
T Consensus 286 Ad~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~-~~k~~ 364 (545)
T PTZ00110 286 ADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEE-HEKRG 364 (545)
T ss_pred HHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEec-hhHHH
Confidence 9999999999999999999999999999999999888888777775 45555554333 223445555444433 44666
Q ss_pred HHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 268 TLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 268 ~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
.+..++... ..+++||||++++.|+.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|
T Consensus 365 ~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 365 KLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcc
Confidence 677777664 457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhc
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
++++||+++.|.+...|+||+||+||.|..|.+++|+++.+...+..+.+.++...+++|+++.++
T Consensus 445 ~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 445 DVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred cCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988754
No 3
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-59 Score=440.15 Aligned_cols=367 Identities=32% Similarity=0.480 Sum_probs=327.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-------CCceeEE
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVECQAL 111 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~l 111 (412)
.+|+++++++.+.+.|...||..|+|+|.++++.++.|+++++.+|||||||++|+++++..+... ..++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 589999999999999999999999999999999999999999999999999999999998876432 1246899
Q ss_pred EEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCc
Q 015158 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEAD 191 (412)
Q Consensus 112 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h 191 (412)
|++|+++|+.|+.+.+..+....++.+..++|+............+++|+|+||+++..++....+.+.+++++|+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 99999999999999999998888999999999988777766677788999999999999998888888999999999999
Q ss_pred hhhccCcHHHHHHHHHhCCC--CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHH
Q 015158 192 EMLSRGFKDQIYDIFQLLPP--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETL 269 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (412)
++.+.+|...+..++..++. ..+.+++|||++..........+..+..+...........+....... ....+...+
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~-~~~~k~~~l 246 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP-SNEEKMRLL 246 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC-CHHHHHHHH
Confidence 99999999999999988874 445789999999988888888888888777665555445555544433 335677788
Q ss_pred HHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 270 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 270 ~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
..++.....+++||||++++.|+.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 247 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~ 326 (423)
T PRK04837 247 QTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTH 326 (423)
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCE
Confidence 88888777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCCh
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
||+++.|.+...|.||+||+||.|+.|.+++|+++.+...+..+++++...++..+.
T Consensus 327 VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~ 383 (423)
T PRK04837 327 VFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKY 383 (423)
T ss_pred EEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccC
Confidence 999999999999999999999999999999999999999999999999988765543
No 4
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.3e-59 Score=439.80 Aligned_cols=363 Identities=36% Similarity=0.598 Sum_probs=331.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.+|+.+++++.+.+.+...||..|+|+|+++++.+++|+++++++|||||||++|+++++..+.......+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876555668999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 119 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
|+.|+.+.++.+.... +..+..++|+.+..........+++|+|+||+.|..++.+..+.+.++++||+||||++.+.+
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887544 688999999988877777777889999999999999999888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcC
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLA 277 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (412)
|...+..++..++...+.+++|||+++........++..+..+...... ....+.+.++.... ..+...+..++....
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~ 241 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSP-DERLPALQRLLLHHQ 241 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCc-HHHHHHHHHHHHhcC
Confidence 9999999999999999999999999998888888888888887776544 33446777776665 347888888888887
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 357 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 357 (412)
.+++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~ 321 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR 321 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccccc
Q 015158 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 403 (412)
Q Consensus 358 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
+...|+||+||+||.|..|.+++++.+.+...+..+++++...++.
T Consensus 322 ~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 322 DPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred CHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999999998876554
No 5
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1e-58 Score=436.70 Aligned_cols=363 Identities=36% Similarity=0.607 Sum_probs=327.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC------CceeEEEE
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL------VECQALVL 113 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil 113 (412)
+|+++++++.+.+.|...+|..|+++|.++++.++.++++++.+|||||||++|+++++..+.... ...++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688999999999999999999999999999999999999999999999999999999998875422 22479999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 114 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+||++|+.|+.+.+..+....++.+..++|+.........+...++|+|+||++|..++......++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999888888999999998877766667778899999999999998887778899999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY 273 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (412)
.+++|...+..++..++...+.+++|||++.+.......++..+..+...........+...+..... ..+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK-KRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCH-HHHHHHHHHHH
Confidence 99999999999999999999999999999998888888888888877766655555566666555543 45666777777
Q ss_pred HhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEc
Q 015158 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 274 ~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~ 353 (412)
......++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||++
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 77767899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccccc
Q 015158 354 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 403 (412)
Q Consensus 354 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
+.|.+..+|+||+||+||.|..|.+++|+...+...++.+++.++.+++.
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~~ 370 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPR 370 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999887743
No 6
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-59 Score=423.65 Aligned_cols=370 Identities=38% Similarity=0.617 Sum_probs=342.0
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc------CCCceeEEEE
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVECQALVL 113 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~lil 113 (412)
.|+.+++++.....++..+|..|+|.|.+.|+.++.|++++..+.||||||++|+++++.++.. ...++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 8899999999999999999999999999999999999999999999999999999999998875 2346789999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 114 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+||++|+.|..+.+.++....++...+++|+.+...+...+..+.+|+|+||.++..+++.....++.+.++|+|||+++
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred hccCcHHHHHHHHHhCC-CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc--cccCCceEEEEEeccchhhHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLP-PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFHVNVEKEEWKLETLC 270 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ 270 (412)
++.+|..++.+|+..++ +..|.++.|||++..+..+...+++++..+.+.... ....++.+....++ ...+...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~-~~~K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD-ETAKLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC-HHHHHHHHH
Confidence 99999999999999994 455799999999999999999999998888776543 45566777776666 455666666
Q ss_pred HHHHhc---CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC
Q 015158 271 DLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 271 ~~~~~~---~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
.++... ..+|+||||++++.|+++...|+..++++..+||+.++.+|+.+++.|++|+..|||||+++++|+|+|++
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 666665 45799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhh
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 410 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (412)
++||++++|.+..+|+||+||.||+|+.|.+++|++..+......+.+.+....+.+++.+..
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~ 473 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLE 473 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987644
No 7
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.7e-58 Score=432.24 Aligned_cols=382 Identities=71% Similarity=1.124 Sum_probs=342.5
Q ss_pred CCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCcee
Q 015158 30 FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ 109 (412)
Q Consensus 30 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~ 109 (412)
..+.+.+...+|+++++++.+.+.+..++|..|+|+|.++++.++.++++++.+|||||||++|+++++..+.....+.+
T Consensus 19 ~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~ 98 (401)
T PTZ00424 19 IESNYDEIVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQ 98 (401)
T ss_pred cccccccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCce
Confidence 33444556788999999999999999999999999999999999999999999999999999999999988765555678
Q ss_pred EEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeC
Q 015158 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDE 189 (412)
Q Consensus 110 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE 189 (412)
+||++|+++|+.|+.+.+..+....+..+..+.|+.....+......+.+|+|+||+++...+.+....++++++||+||
T Consensus 99 ~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 99 ALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 99999999999999999999887777888888888876666666667789999999999998888777788999999999
Q ss_pred CchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHH
Q 015158 190 ADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETL 269 (412)
Q Consensus 190 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (412)
+|++.+.++...+..++..++++.+++++|||+++........+...+..+...........+..++........+...+
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 258 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTL 258 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHH
Confidence 99999988888899999999999999999999998888888888888877766666666667777777776656677777
Q ss_pred HHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 270 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 270 ~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
..++......++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 259 ~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~ 338 (401)
T PTZ00424 259 CDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSL 338 (401)
T ss_pred HHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCE
Confidence 78887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhc
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
||+++.|.|...|.||+||+||.|..|.|++++++.+...++.+++.+..++++.++...+.
T Consensus 339 VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 400 (401)
T PTZ00424 339 VINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADY 400 (401)
T ss_pred EEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhc
Confidence 99999999999999999999999999999999999999999999999999999888776554
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-59 Score=397.63 Aligned_cols=369 Identities=34% Similarity=0.547 Sum_probs=349.8
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEE
Q 015158 34 YDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 113 (412)
Q Consensus 34 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 113 (412)
..+...+|.++++.+.+.++....++..|++.|+++++.++.|++++..+.||||||.+|++|+++.+........++|+
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVL 135 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVL 135 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEe
Confidence 35667899999999999999999999999999999999999999999999999999999999999999888778899999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHH-cCCCCCCCceEEEEeCCch
Q 015158 114 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR-RQSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~-~~~~~~~~~~~iiiDE~h~ 192 (412)
+|+++|+.|+.+.+..++...|+.+..+.|+.............++|+|+||+.|..++. ...+....++++|+|||++
T Consensus 136 tPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr 215 (476)
T KOG0330|consen 136 TPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR 215 (476)
T ss_pred cCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh
Confidence 999999999999999999999999999999999888877888899999999999999998 5677888999999999999
Q ss_pred hhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHH
Q 015158 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDL 272 (412)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (412)
+++.+|...+..|+..+|...+.+++|||++..........+..|..+.........+.+.+.+..++. .++...|..+
T Consensus 216 lLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~-k~K~~yLV~l 294 (476)
T KOG0330|consen 216 LLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPG-KDKDTYLVYL 294 (476)
T ss_pred hhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccc-cccchhHHHH
Confidence 999999999999999999999999999999999988888889999999988888888888888888876 5688889999
Q ss_pred HHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE
Q 015158 273 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 352 (412)
Q Consensus 273 ~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~ 352 (412)
++......+||||++...+..++-.|+..|+.+..+||.|++..|-..++.|++|..+||+||+..++|+|+|.+++||.
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccccc
Q 015158 353 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 403 (412)
Q Consensus 353 ~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
|+.|.+..+|++|+||.+|.|.+|.++.+++..|.+.+.+++..+++..+.
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999987654
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.1e-58 Score=431.62 Aligned_cols=364 Identities=34% Similarity=0.537 Sum_probs=331.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC----CCceeEEEEcC
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVECQALVLAP 115 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~lil~P 115 (412)
+|+.+++++.+.+.|...||.+|+++|.++++.++.|+++++.+|||+|||++|+++++..+... ....++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 68999999999999999999999999999999999999999999999999999999999876432 12358999999
Q ss_pred CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 116 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
+++|+.|+.+.+..+....++.+..++|+............+++|+|+||++|...+....+..+++++||+||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999988889999999999888777777778889999999999999998888889999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEeecCChH-HHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHH
Q 015158 196 RGFKDQIYDIFQLLPPKIQVGVFSATMPPE-ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE 274 (412)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (412)
++|...+..+...++...+.+++|||++.. .......++..+..+...........+.+.+...+....+...+..++.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 999999999999998889999999999754 6666777778888877776666666777777777766778888888888
Q ss_pred hcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc
Q 015158 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 354 (412)
Q Consensus 275 ~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~ 354 (412)
....+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||+++
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d 321 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFD 321 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEEC
Confidence 76778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccccc
Q 015158 355 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 403 (412)
Q Consensus 355 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
.|.|...|+||+||+||.|..|.++++++..+...+..+++++...+..
T Consensus 322 ~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~~ 370 (434)
T PRK11192 322 MPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLKA 370 (434)
T ss_pred CCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999988876543
No 10
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.2e-58 Score=442.54 Aligned_cols=366 Identities=39% Similarity=0.606 Sum_probs=333.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.+|+++++++.+.++|..+||.+|+|+|.++++.+++++++++.+|||||||.+|.++++..+......+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 46899999999999999999999999999999999999999999999999999999999988766555678999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 119 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
|+.|+++.+..+.... ++.+..++|+.....+...+...++|+|+||+++..++.+..+.++++++||+||||++++.+
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 9999999999886554 788889999988777777777788999999999999998888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcC
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLA 277 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (412)
|...+..++..++...+.+++|||++.........++..+..+.........+.+.+.+..+.. ..+...+..++....
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~-~~k~~~L~~~L~~~~ 244 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG-MRKNEALVRFLEAED 244 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech-hhHHHHHHHHHHhcC
Confidence 9999999999999999999999999998888888888888888777666666666666665554 457778888888777
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 357 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 357 (412)
..++||||+++..++.+++.|.+.++.+..+||++++.+|..++++|++|+++|||||+++++|+|+|++++||+++.|.
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~ 324 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM 324 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 358 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
+...|+||+||+||.|+.|.+++|+++.+...++.+++.++..++++.
T Consensus 325 ~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 325 DSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred CHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 999999999999999999999999999999999999999998877654
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.3e-58 Score=437.23 Aligned_cols=374 Identities=32% Similarity=0.535 Sum_probs=330.5
Q ss_pred hhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-------CCCc
Q 015158 35 DEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-------GLVE 107 (412)
Q Consensus 35 ~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-------~~~~ 107 (412)
..+..+|+.+++++.+.+.|...||..|+|+|.++++.++.|+++++.+|||||||++|+++++..+.. ...+
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 367788999999999999999999999999999999999999999999999999999999999876532 1245
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVL 187 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iii 187 (412)
+++||++||++|+.|+.+.++.+....++.+..+.|+.........+..+++|+|+||++|..++.+....++++++||+
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lVi 276 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVL 276 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEe
Confidence 68999999999999999999998877788888888888776666666677899999999999999888888899999999
Q ss_pred eCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHH
Q 015158 188 DEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLE 267 (412)
Q Consensus 188 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (412)
||||++.+++|...+..++..++ +.+++++|||++.........+...+..+...........+.+....... ..+..
T Consensus 277 DEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~-~~k~~ 354 (518)
T PLN00206 277 DEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET-KQKKQ 354 (518)
T ss_pred ecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc-hhHHH
Confidence 99999999999999999988885 67899999999998888888888888877776655555556666555554 34556
Q ss_pred HHHHHHHhcC--CCcEEEEEcchhHHHHHHHHHhc-CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 268 TLCDLYETLA--ITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 268 ~l~~~~~~~~--~~k~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
.+.+++.... ..++||||+++..++.+++.|.. .++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 355 ~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDi 434 (518)
T PLN00206 355 KLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDL 434 (518)
T ss_pred HHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCc
Confidence 6667766543 36899999999999999999975 58899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhh
Q 015158 345 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 410 (412)
Q Consensus 345 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (412)
|++++||+++.|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.++...+.+|.++.+
T Consensus 435 p~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 435 LRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred ccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999988754
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-57 Score=436.43 Aligned_cols=363 Identities=33% Similarity=0.524 Sum_probs=323.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-------CCceeEEE
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVECQALV 112 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~li 112 (412)
+|+.+++++.+.+.|...||..|+|+|.++++.+++|+++++.+|||||||++|+++++..+... ...+++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 69999999999999999999999999999999999999999999999999999999999876432 12468999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCCc
Q 015158 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEAD 191 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~h 191 (412)
++|+++|+.|+.+.+..+....++.+..++|+.....+...+..+++|+|+||++|.+++.+. .+.+..+++||+||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 999999999999999999888899999999998877776777778899999999999988764 3567789999999999
Q ss_pred hhhccCcHHHHHHHHHhCCC--CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHH
Q 015158 192 EMLSRGFKDQIYDIFQLLPP--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETL 269 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (412)
++.+.+|...+..++..++. ..+++++|||++.........++..+..+...........+.+.+... ....+...+
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~-~~~~k~~~L 248 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFP-ADEEKQTLL 248 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEec-CHHHHHHHH
Confidence 99999999999999998876 678999999999988888888888877666655554445555554443 335577778
Q ss_pred HHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 270 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 270 ~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
..++......++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++
T Consensus 249 ~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~ 328 (572)
T PRK04537 249 LGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKY 328 (572)
T ss_pred HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCE
Confidence 88887777789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccccc
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 403 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (412)
||+++.|.+...|+||+||+||.|..|.+++|+++.+...+..+++++...++.
T Consensus 329 VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~ 382 (572)
T PRK04537 329 VYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPV 382 (572)
T ss_pred EEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCc
Confidence 999999999999999999999999999999999999999999999998876643
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-57 Score=429.11 Aligned_cols=369 Identities=45% Similarity=0.705 Sum_probs=341.4
Q ss_pred hhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCcee-EE
Q 015158 34 YDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQ-AL 111 (412)
Q Consensus 34 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~-~l 111 (412)
.......|+.+++++.+.+++...||..|+|.|..+++.++.|++++..++||||||.+|++++++.+.. ...... +|
T Consensus 24 ~~~~~~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aL 103 (513)
T COG0513 24 EEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSAL 103 (513)
T ss_pred cccccCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceE
Confidence 3333467999999999999999999999999999999999999999999999999999999999999773 222222 99
Q ss_pred EEcCCHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCC
Q 015158 112 VLAPTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEA 190 (412)
Q Consensus 112 il~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~ 190 (412)
|++||++|+.|+.+.+..+.... ++.+..++|+.....+...+..+++|+|+||.++..++.+..+.+.++.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999888 78999999999988887777777999999999999999999999999999999999
Q ss_pred chhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCcc--ccCCceEEEEEeccchhhHHH
Q 015158 191 DEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVEKEEWKLET 268 (412)
Q Consensus 191 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 268 (412)
+++++.+|...+..+...++.+.|.+++|||++.........++.+|..+....... ....+.+.++.+.....+...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888775555 778899999999876679999
Q ss_pred HHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCC
Q 015158 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 348 (412)
Q Consensus 269 l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~ 348 (412)
+..++.....+++||||++++.++.++..|...|+.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|+++
T Consensus 264 L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 264 LLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC-cHHHHHHHHHHhccccc
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIE 402 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 402 (412)
+||+++.|.++..|+||+||+||.|..|.++.|+.+. +...+..+++.+....+
T Consensus 344 ~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 344 HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred eeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999986 89999999999876643
No 14
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-56 Score=423.46 Aligned_cols=363 Identities=33% Similarity=0.522 Sum_probs=322.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC-------CceeE
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-------VECQA 110 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-------~~~~~ 110 (412)
...|..+++++.+.++|...||..|+++|.++++.+++|+++++.+|||||||++|+++++..+.... ...++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 34688899999999999999999999999999999999999999999999999999999998875432 14689
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeC
Q 015158 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDE 189 (412)
Q Consensus 111 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE 189 (412)
||++||++|+.|+.+.+..+....++.+..++|+.......... ...++|+|+||++|..+..++...++++++||+||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999999999888889999999987655544333 45689999999999998888888889999999999
Q ss_pred CchhhccCcHHHHHHHHHhCCC--CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHH
Q 015158 190 ADEMLSRGFKDQIYDIFQLLPP--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLE 267 (412)
Q Consensus 190 ~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (412)
+|.+.+.++...+..++..++. ..+++++|||++.+.......+...+..+...........+...+..... ..+..
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~k~~ 324 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAG-SDKYK 324 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecc-hhHHH
Confidence 9999999999999999888864 56899999999988888888888888887776666555555555555443 45667
Q ss_pred HHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC
Q 015158 268 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 268 ~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
.+..++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|.++++.|++|++++||||+++++|+|+|++
T Consensus 325 ~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v 404 (475)
T PRK01297 325 LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGI 404 (475)
T ss_pred HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCC
Confidence 78888887777899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccc
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 401 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (412)
++||+++.|.|...|.||+||+||.|.+|.+++|+++.|...+..++++++..+
T Consensus 405 ~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 405 SHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred CEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999998876
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.3e-54 Score=376.79 Aligned_cols=367 Identities=34% Similarity=0.540 Sum_probs=338.8
Q ss_pred CCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-------
Q 015158 31 FTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------- 103 (412)
Q Consensus 31 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~------- 103 (412)
-...+++..+|+..+++..+++.+...||..|+|.|+.+++..++++++|.++.||||||.+|+++++..+..
T Consensus 237 g~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~ 316 (673)
T KOG0333|consen 237 GGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARL 316 (673)
T ss_pred CCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchh
Confidence 3446678889999999999999999999999999999999999999999999999999999999988876532
Q ss_pred --CCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 104 --GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 104 --~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
...++.++++.||+.|++|+.++-.++....++.+..+.|+...+...-.+..++.|+|+||..|...+.+..+.+..
T Consensus 317 en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 317 ENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred hhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 234678999999999999999999999999999999999999987776677889999999999999999999888899
Q ss_pred ceEEEEeCCchhhccCcHHHHHHHHHhCCC-------------------------CceEEEEeecCChHHHHHHHHhcCC
Q 015158 182 IRIFVLDEADEMLSRGFKDQIYDIFQLLPP-------------------------KIQVGVFSATMPPEALEITRKFMNK 236 (412)
Q Consensus 182 ~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~-------------------------~~~~i~~SAT~~~~~~~~~~~~~~~ 236 (412)
..++|+|||+++.+.+|...+..++..+|. -.+.+.+|||+++....+...++..
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~ 476 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRR 476 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhC
Confidence 999999999999999999999999999873 1467999999999999999999999
Q ss_pred CeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHH
Q 015158 237 PVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 316 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 316 (412)
|+.+.+.......+-+.+.+..+.. +.+...|.+++......++|||+|.++.|+.+++.|.+.|+.+..+||+-++++
T Consensus 477 pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 477 PVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred CeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 9999999988888888888888876 456899999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 317 r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
|+.+++.|++|..+|+|||+++++|+|+|++.+||.++.+.|..+|.+||||.||+|+.|.++.|+++.+...++.+.+.
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~ 635 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQA 635 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777777766
Q ss_pred hc
Q 015158 397 YN 398 (412)
Q Consensus 397 ~~ 398 (412)
+.
T Consensus 636 l~ 637 (673)
T KOG0333|consen 636 LR 637 (673)
T ss_pred HH
Confidence 65
No 16
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-54 Score=359.24 Aligned_cols=370 Identities=40% Similarity=0.664 Sum_probs=347.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
-..|+++.+..++...+.+.||..|+|.|.++++..+.|++++..+..|+|||-+|.+++++.+......-+.++++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 45788899999999999999999999999999999999999999999999999999999999998877777899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
+|+-|..+.++.++...++.+...+|+++...+.-.+.+..+++|+||++++.+..+.-..+++..++|+|||+.+++..
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 99999999999999999999999999999888877778889999999999999999988888899999999999999999
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcC
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLA 277 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (412)
|...+..++..+|++.|+++.|||.+-....++...+.+|..+. -.++....++.++|..+.. ..+..-+..+..+..
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~IN-LM~eLtl~GvtQyYafV~e-~qKvhCLntLfskLq 321 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEIN-LMEELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQ 321 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceee-hhhhhhhcchhhheeeech-hhhhhhHHHHHHHhc
Confidence 99999999999999999999999999999999999999998665 4556677788888877766 558888888888888
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 357 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 357 (412)
....||||||...++-+++.+.+.|+.+.++|+.|.++.|..++..|++|..+.||||+.+.+|+|++.+++||.++.|.
T Consensus 322 INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk 401 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK 401 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhh
Q 015158 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVA 409 (412)
Q Consensus 358 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (412)
++..|.+|+||.||.|-.|.++-+++..|...+..+++.++.+++++|..+.
T Consensus 402 ~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 402 NAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 9999999999999999999999999999999999999999999999998764
No 17
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.6e-53 Score=369.35 Aligned_cols=356 Identities=31% Similarity=0.485 Sum_probs=319.0
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC----CceeEEEE
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VECQALVL 113 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil 113 (412)
-..|+...+++...++++.+||..+++.|...++.++.|++++..|-||+|||+++++++...+...+ .+-.++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 45678889999999999999999999999999999999999999999999999999999998876543 34469999
Q ss_pred cCCHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC-CCCCCceEEEEeCCc
Q 015158 114 APTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS-LRPDNIRIFVLDEAD 191 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-~~~~~~~~iiiDE~h 191 (412)
|||++|+.|.+.+++++.... +..+....|+.+.....+....++.|+|+||++|..++++.. +..++.+++|+|||+
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999988777 889999999999887777777799999999999999998854 446777899999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCC-CeEEEecCCc--cccCCceEEEEEeccchhhHHH
Q 015158 192 EMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDE--LTLEGIKQFHVNVEKEEWKLET 268 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 268 (412)
++++.+|...+..|...+|...|.+++|||.++.+.+.....+.. +..+...... ..-..+.+.+...+.. .....
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~-~~f~l 319 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSD-SRFSL 319 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecccc-chHHH
Confidence 999999999999999999999999999999999888877766554 6666655433 2334566666666654 34788
Q ss_pred HHHHHHhcCC-CcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC
Q 015158 269 LCDLYETLAI-TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 269 l~~~~~~~~~-~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
+..+++++.. .|+||||++...+..+++.|+..++++..+||+.++..|..+..+|.+.+..|||||++..+|+|+|++
T Consensus 320 l~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 320 LYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 8889988866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
++|+.+++|.++.+|++|+||.+|.|..|++++++.+.+..+++.+.
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888877
No 18
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-53 Score=372.72 Aligned_cols=359 Identities=35% Similarity=0.563 Sum_probs=332.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC---CceeEEEEc
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VECQALVLA 114 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~ 114 (412)
..+|.+++|+-.+.+++...||..|+|.|...++..+-|++++-++.||||||.+|++|++.++.... ...++||+|
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999986543 345899999
Q ss_pred CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCchh
Q 015158 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~~ 193 (412)
||++|+.|.....++++...++.+.+..||.....+...+...++|+|+||++|..++.+ ..+.++++.++|+|||+++
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987 5677899999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEec--cchhhHHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVE--KEEWKLETLCD 271 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ 271 (412)
++.+|..++..++..|+.+.|.+++|||+...+.++..--+++|+.+.+.......+.+.+-+..+. ....+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888777777666555443 33446667777
Q ss_pred HHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEE
Q 015158 272 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 (412)
Q Consensus 272 ~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi 351 (412)
++.......++||+.+++.|..+.-.|-=.|..+.-+||.+++.+|-..++.|++++++|||||+..++|+|++++.+||
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI 499 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI 499 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE
Confidence 88877788999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 352 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 352 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
.+..|.+...|++|+||..|+|..|.++.|..+++-+.++.+.+.
T Consensus 500 Ny~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 500 NYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 999999999999999999999999999999999999998888766
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-52 Score=373.65 Aligned_cols=372 Identities=35% Similarity=0.514 Sum_probs=339.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC----------c
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV----------E 107 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~----------~ 107 (412)
+..|..-.+.+.+..+++..++..|+|+|+.+++.+..|++++++|+||+|||.+|+++++..+..... .
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 447887788999999999999999999999999999999999999999999999999999998765422 4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVL 187 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iii 187 (412)
++++|++||++|+.|.+++.+++....+......+|+.+...+......+++|+++||.+|..++++..+.+++++++|+
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vL 232 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVL 232 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEe
Confidence 78999999999999999999999988899999999998888888888899999999999999999999999999999999
Q ss_pred eCCchhhc-cCcHHHHHHHHHhCCC----CceEEEEeecCChHHHHHHHHhcCC-CeEEEecCCccccCCceEEEEEecc
Q 015158 188 DEADEMLS-RGFKDQIYDIFQLLPP----KIQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVEK 261 (412)
Q Consensus 188 DE~h~~~~-~~~~~~~~~i~~~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (412)
|||+.+.+ .+|...+..++..... +.|-+++|||.+.+.......++.+ .....+........++.+....+..
T Consensus 233 DEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 233 DEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred cchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc
Confidence 99999999 8999999999988743 6789999999999988888877776 6777788888888899998888887
Q ss_pred chhhHHHHHHHHHhcC----CC-----cEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015158 262 EEWKLETLCDLYETLA----IT-----QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332 (412)
Q Consensus 262 ~~~~~~~l~~~~~~~~----~~-----k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 332 (412)
.. +...+.+++.... .+ +++|||.+++.+..+...|...++....+||+-++.+|.+.+..|++|...++
T Consensus 313 ~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 313 ME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred hh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 44 5556666655332 23 89999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhh
Q 015158 333 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 410 (412)
Q Consensus 333 v~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (412)
|+|++.++|+|+|+++|||.++.|.+..+|++|+||+||.|+.|.+..|++..+....+.+.+.+....+.+|.|+.+
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999976
No 20
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.4e-53 Score=358.63 Aligned_cols=383 Identities=72% Similarity=1.084 Sum_probs=361.3
Q ss_pred CCCCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC
Q 015158 27 GQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV 106 (412)
Q Consensus 27 ~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~ 106 (412)
+..+.++|.+..++|++++|.+++.+.++..||.+|+..|+.|+..+.+|.++.+.+.+|+|||.++..+++..+.....
T Consensus 14 ~~~iesn~~evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k 93 (397)
T KOG0327|consen 14 EGVIESNWNEVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK 93 (397)
T ss_pred cccccccHHHHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999998877666
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH-HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEE
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ-RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIF 185 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 185 (412)
...+++++|+++|+.|..+....++...+..+..+.|+....... ......++|+++||+.....+....+..+.+.++
T Consensus 94 e~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmf 173 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMF 173 (397)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEE
Confidence 678999999999999999999999998899999999988877444 4445568999999999999998888888889999
Q ss_pred EEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhh
Q 015158 186 VLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWK 265 (412)
Q Consensus 186 iiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (412)
|+||++++...+|...+..+...+|++.|++++|||.+.+.....+.+..+|+.+.....+...+.+++++..+.... +
T Consensus 174 vlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k 252 (397)
T KOG0327|consen 174 VLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-K 252 (397)
T ss_pred eecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988855 8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 266 ~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
...+..+.. .....+||||+++.+..+...|..++..+..+|+++.+.+|+.+.+.|+.|..+|||+|+.+++|+|+.
T Consensus 253 ~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~ 330 (397)
T KOG0327|consen 253 LDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQ 330 (397)
T ss_pred ccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchh
Confidence 888888888 446899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhcC
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 412 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (412)
.+..|+.++.|.....|.+|+||+||.|.+|.++.++.+.+...+++++++|...++++|.++.+|+
T Consensus 331 ~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 331 QVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred hcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999998875
No 21
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.9e-52 Score=359.94 Aligned_cols=356 Identities=33% Similarity=0.544 Sum_probs=315.1
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC--C--Cc-eeEEE
Q 015158 40 TFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--L--VE-CQALV 112 (412)
Q Consensus 40 ~f~~~~--l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--~--~~-~~~li 112 (412)
.|++++ +++++...+...||...+|+|..+++.+++++++++.++||||||++|++|++..+... . ++ --++|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 466664 56999999999999999999999999999999999999999999999999999988322 1 11 25899
Q ss_pred EcCCHHHHHHHHHHHHHhhcc-cCcEEEEEEcCcchHHHHHHhc-CCCcEEEeChHHHHHHHHcCC--CCCCCceEEEEe
Q 015158 113 LAPTRELAQQIEKVMRALGDY-LGVKVHACVGGTSVREDQRILS-SGVHVVVGTPGRVFDMLRRQS--LRPDNIRIFVLD 188 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~--~~~~~~~~iiiD 188 (412)
|+||++|+.|+.+....+... .+++..++.|+.+...+...+. .++.|+|+||++|..++.+.. ++.+++.++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999998887655 5889999999998888766654 567899999999999998743 445699999999
Q ss_pred CCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCcc--ccCCceEEEEEeccchhhH
Q 015158 189 EADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFHVNVEKEEWKL 266 (412)
Q Consensus 189 E~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 266 (412)
||+++.+.+|...++.|++.+|++.+.=++|||......++....+.+++.+.+..... .+......+..+.. ..+.
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a-~eK~ 243 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA-DEKL 243 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecH-HHHH
Confidence 99999999999999999999999999999999999999999999999999988876665 66667777777765 6789
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 267 ~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
..+.+++.....+|.|||+++...++.++..+... +..+..+||.++...|..+++.|.+..-.+++||+++.+|+|+
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 99999999999999999999999999999998765 6689999999999999999999999888899999999999999
Q ss_pred CCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccc
Q 015158 345 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV 400 (412)
Q Consensus 345 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (412)
|++++||++++|.++..|.+|.||++|.|..|.+++|+.+.+.. +..|++..
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a----YveFl~i~ 375 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA----YVEFLRIK 375 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH----HHHHHHhc
Confidence 99999999999999999999999999999999999999995553 45555544
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-52 Score=355.51 Aligned_cols=373 Identities=33% Similarity=0.516 Sum_probs=338.1
Q ss_pred hhhhccccccC-CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc------CCC
Q 015158 34 YDEVYDTFDAM-GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLV 106 (412)
Q Consensus 34 ~~~~~~~f~~~-~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~------~~~ 106 (412)
..+|.-+|++. .-.+++...+...||.+|+|.|.+|++.+++|.+++-++.||+|||++++++.+..+.. ...
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~ 293 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRN 293 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccC
Confidence 45566677764 67899999999999999999999999999999999999999999999999988766543 245
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
++.+|+++||++|+.|+.-++.++. ..+....+++|+.+.......+..+.+|+++||.+|..+.-..-.++..+.++|
T Consensus 294 ~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlV 372 (629)
T KOG0336|consen 294 GPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLV 372 (629)
T ss_pred CCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEE
Confidence 6789999999999999988888764 347888888888888888888899999999999999999888888889999999
Q ss_pred EeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccC-CceEEEEEeccchhh
Q 015158 187 LDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE-GIKQFHVNVEKEEWK 265 (412)
Q Consensus 187 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 265 (412)
+|||+++++.+|..++.+++-..++..+.+..|||+++.+..+.+.++.+|..+.....+...- ++.+.+ .+....++
T Consensus 373 lDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k 451 (629)
T KOG0336|consen 373 LDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEK 451 (629)
T ss_pred ecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHH
Confidence 9999999999999999999999999999999999999999999999999999998887766543 444444 66666778
Q ss_pred HHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 266 LETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 266 ~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
...+..+++.+ ..+|+||||.++..|+.+..-|.-.|+....+||+-.+.+|+..++.|+.|+.+|||+|+.+++|+|+
T Consensus 452 ~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv 531 (629)
T KOG0336|consen 452 LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDV 531 (629)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCc
Confidence 88888888887 45899999999999999999998889999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhh
Q 015158 345 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 345 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
+++.||+.++.|.+..+|++|+||.||+|..|.++.|++..|-.....+.+.+....+++|+++
T Consensus 532 ~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL 595 (629)
T KOG0336|consen 532 PDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDEL 595 (629)
T ss_pred hhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-51 Score=344.77 Aligned_cols=366 Identities=37% Similarity=0.509 Sum_probs=317.5
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
..+|+.+|+++++.+.+...++.+|+|.|...++.+++|++++=++.||||||.++.+++++.+.....+..++|++||+
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 46899999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC----CCCCCCceEEEEeCCchh
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ----SLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~----~~~~~~~~~iiiDE~h~~ 193 (412)
+|+-|..++|..++...++.+..+.|+...-.....+...++++++||+++..++... .+-++++.++|+|||+.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999999999999999999999877777778888999999999999888764 233578899999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCC--CeEEEecCCccccCCceEEEEEeccchhhHHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCD 271 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (412)
.+..|...+..+.+.+|...|.+++|||+..........-... .............+....-+..++. ..+...+..
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~-~vkdaYLv~ 244 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSI-DVKDAYLVH 244 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecch-hhhHHHHHH
Confidence 9999999999999999999899999999975443332222222 1222223333334444444554444 445555666
Q ss_pred HHHhc---CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCC
Q 015158 272 LYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 348 (412)
Q Consensus 272 ~~~~~---~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~ 348 (412)
+++.. ..+.++||+++...|+.++..|+..++++..+|+.|++.+|-..+.+|+++..++||||+.+++|+|+|.++
T Consensus 245 ~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~ 324 (442)
T KOG0340|consen 245 LLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVE 324 (442)
T ss_pred HHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCcee
Confidence 66554 347899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccC
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 404 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (412)
.|+.++.|.++.+|++|+||..|+|..|.++.|+++.|.+.+..+++-.++...+-
T Consensus 325 LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 325 LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred EEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999998877755443
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-50 Score=358.56 Aligned_cols=357 Identities=31% Similarity=0.465 Sum_probs=323.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC----CceeEEEE
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VECQALVL 113 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil 113 (412)
...|.+++++....+.|...+|..++..|+++++..+.|++++=.+-||||||++++.+++..+...+ .+--+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 34899999999999999999999999999999999999999999999999999999999999886543 23469999
Q ss_pred cCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCch
Q 015158 114 APTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 114 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~ 192 (412)
.||++|+.|+++.+.+.+...++...++.||.......... +...|+||||++|+.++.. ..+...++.++|+|||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999998866554433 4568999999999888765 566678899999999999
Q ss_pred hhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecC--CccccCCceEEEEEeccchhhHHHHH
Q 015158 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFHVNVEKEEWKLETLC 270 (412)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (412)
+++.+|...+..|+..+|+..|.+++|||....+.++..--+.+|.++.+.. ....+.+..++++.++. ..++..|.
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l-~~Ki~~L~ 305 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPL-EDKIDMLW 305 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEeh-hhHHHHHH
Confidence 9999999999999999999999999999999999999988889998887763 34567778888888876 66999999
Q ss_pred HHHHhcCCCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCC
Q 015158 271 DLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS 348 (412)
Q Consensus 271 ~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~ 348 (412)
.+++.+...|+|||+.|.+++..+++.+++. |..+..+||.|++..|..+..+|....--||+||+++++|+|+|.++
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 9999999999999999999999999999875 77899999999999999999999998888999999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCc-HHHHHHHHHH
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKF 396 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~ 396 (412)
+||.++.|-+..+|++|+||..|.+..|.+++++.+.+ +.++..+++.
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 99999999999999999999999999999999999998 6666666654
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.8e-50 Score=391.90 Aligned_cols=361 Identities=20% Similarity=0.252 Sum_probs=281.2
Q ss_pred ChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEE
Q 015158 33 SYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALV 112 (412)
Q Consensus 33 ~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 112 (412)
.....+.+|.. .+++.+.+.|...||.+|+++|.++++.+++|+++++.+|||||||++|+++++..+... ++.++||
T Consensus 9 ~~~a~~~~~~~-~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~ 86 (742)
T TIGR03817 9 ARAGRTAPWPA-WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALY 86 (742)
T ss_pred CCCcccCCCCC-cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEE
Confidence 33444444433 378999999999999999999999999999999999999999999999999999988653 4568999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC----CCCCCCceEEEEe
Q 015158 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ----SLRPDNIRIFVLD 188 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~----~~~~~~~~~iiiD 188 (412)
++|+++|+.|+.+.++++. ..++.+..+.|+...... .....+++|+++||+++...+... ...++++++||+|
T Consensus 87 l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViD 164 (742)
T TIGR03817 87 LAPTKALAADQLRAVRELT-LRGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVID 164 (742)
T ss_pred EcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEe
Confidence 9999999999999999986 447788888888764433 344556899999999987533221 1225789999999
Q ss_pred CCchhhccCcHHHHHHH-------HHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEecc
Q 015158 189 EADEMLSRGFKDQIYDI-------FQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK 261 (412)
Q Consensus 189 E~h~~~~~~~~~~~~~i-------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (412)
|+|.+.+ .|...+..+ ....+.+.|++++|||+++.. +....+++.+..+. ..... +.....+....+.
T Consensus 165 Eah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~-~~~~~~~~~~~p~ 240 (742)
T TIGR03817 165 ECHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGS-PRGARTVALWEPP 240 (742)
T ss_pred ChhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCC-CcCceEEEEecCC
Confidence 9999865 354443333 333456789999999998764 45667777775443 22221 1222222222111
Q ss_pred ----------------chhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC--------CCeeEEecCCCCHHHH
Q 015158 262 ----------------EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTR 317 (412)
Q Consensus 262 ----------------~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r 317 (412)
...+...+..++.. ..++||||+|++.++.++..|++. +..+..+||++++++|
T Consensus 241 ~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 241 LTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHH
Confidence 11234455555553 469999999999999999988753 5678899999999999
Q ss_pred HHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEec--cCcHHHHHHHHH
Q 015158 318 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT--RDDERMLFDIQK 395 (412)
Q Consensus 318 ~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~--~~~~~~~~~~~~ 395 (412)
.+++++|++|++++||||+++++|+|++++++||+++.|.+...|.||+||+||.|+.|.++++.. +.|...+..+++
T Consensus 319 ~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~ 398 (742)
T TIGR03817 319 RELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEA 398 (742)
T ss_pred HHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999886 446667777888
Q ss_pred Hhcccccc
Q 015158 396 FYNVVIEE 403 (412)
Q Consensus 396 ~~~~~~~~ 403 (412)
+++...+.
T Consensus 399 ~~~~~~e~ 406 (742)
T TIGR03817 399 LFDRPVEA 406 (742)
T ss_pred HhcCCCcc
Confidence 88876554
No 26
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-50 Score=350.69 Aligned_cols=380 Identities=32% Similarity=0.476 Sum_probs=353.4
Q ss_pred CChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----CC
Q 015158 32 TSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LV 106 (412)
Q Consensus 32 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-----~~ 106 (412)
.+...+...|+.+++++.+..++..-.|.+|+|.|.++++..+.|++++=.+.||||||-+++.+++..+... ..
T Consensus 216 ~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 3455667899999999999999999999999999999999999999999999999999999999998877543 24
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
++..+|+|||++|+.|++.++++|+...++++..++|+.+...+.+-+..++.||||||++|..++.-...++.++.++|
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEE
Confidence 67899999999999999999999999999999999999998888777888999999999999999998888899999999
Q ss_pred EeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhH
Q 015158 187 LDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKL 266 (412)
Q Consensus 187 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (412)
+||++++.+.+|..+++.|....++..|.+++|||....+....+.++..|+.+-..........+.+.+..+.+...+.
T Consensus 376 ~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl 455 (731)
T KOG0339|consen 376 LDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKL 455 (731)
T ss_pred EechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877777788999999999888888
Q ss_pred HHHHHHHHh-cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 267 ETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 267 ~~l~~~~~~-~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
.++..-+.. ...+++|+|+.-+..++.+...|+-.++++..+||++.+.+|.+++..|+.+...|+++|+...+|+|++
T Consensus 456 ~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~ 535 (731)
T KOG0339|consen 456 NWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIP 535 (731)
T ss_pred HHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcc
Confidence 776655544 4668999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhc
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
.+++|+.++...+...+.||+||.||.|.+|.+|+++++.|..+.-.+.+.+.-..+.||+++.+|
T Consensus 536 ~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 536 SIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred ccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987654
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-50 Score=345.36 Aligned_cols=361 Identities=30% Similarity=0.449 Sum_probs=316.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC------CCceeEEE
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVECQALV 112 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~li 112 (412)
.+|+.+++++.+.+++...|+.+|+-.|..|++.+++|++++..|.||||||.+|++++++.+... ..+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 699999999999999999999999999999999999999999999999999999999999876432 34568999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccC--cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC-CCCCCceEEEEeC
Q 015158 113 LAPTRELAQQIEKVMRALGDYLG--VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS-LRPDNIRIFVLDE 189 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-~~~~~~~~iiiDE 189 (412)
++||++|++|.+..+.++....+ +.+.-+..+.+.......+.+.++|+|+||..+..++.... .....+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999998888654433 33434443444444456677889999999999999998766 5567899999999
Q ss_pred CchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCcccc-CCceEEEEEeccchhhHHH
Q 015158 190 ADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTL-EGIKQFHVNVEKEEWKLET 268 (412)
Q Consensus 190 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 268 (412)
|+.+++.+|...+..+...+|+..|.++||||+..++..+-..++.+|+.......+... ..+.+++..+. ..++...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cs-e~DKfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCS-EEDKFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEec-cchhHHH
Confidence 999999999999999999999999999999999999999888899999998777666553 45666666666 5677777
Q ss_pred HHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC----------
Q 015158 269 LCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL---------- 337 (412)
Q Consensus 269 l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~---------- 337 (412)
+..+++-. -.+|.|||+|++..+..+.-.|++.|+...+++|+++.+.|-.++++|+.|-++++|+|+.
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 77777664 5589999999999999999999999999999999999999999999999999999999991
Q ss_pred -------------------------CcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHH
Q 015158 338 -------------------------LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD 392 (412)
Q Consensus 338 -------------------------~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 392 (412)
..+|+|+..+.+|+.++.|.+...|++|+||.+|.+++|.++.|+.+.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 2389999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhccc
Q 015158 393 IQKFYNVV 400 (412)
Q Consensus 393 ~~~~~~~~ 400 (412)
++.+++..
T Consensus 418 le~~~~d~ 425 (569)
T KOG0346|consen 418 LESILKDE 425 (569)
T ss_pred HHHHHhhH
Confidence 88887764
No 28
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-49 Score=336.30 Aligned_cols=368 Identities=41% Similarity=0.687 Sum_probs=329.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
...|+.+.|.+++.+.++.++|..|+..|..|++.++.. ++.+-++..|+|||.+|.+.++.++......++++.++|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaP 168 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAP 168 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCc
Confidence 468999999999999999999999999999999999986 789999999999999999999999988777889999999
Q ss_pred CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCchhh
Q 015158 116 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~~~ 194 (412)
+++|+.|+.+.+.+.+...++.......+.....- ..-..+|+|+||..+..+... ..+....+..+|+|||+.+.
T Consensus 169 trELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG---~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi 245 (477)
T KOG0332|consen 169 TRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG---NKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMI 245 (477)
T ss_pred hHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC---CcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhh
Confidence 99999999999999988777777666655421111 112347999999999998877 66777899999999999877
Q ss_pred c-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHH
Q 015158 195 S-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY 273 (412)
Q Consensus 195 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (412)
+ .+|...-..+...+|++.|++++|||.......+......++..+...+++....++.+++..+.....+...+.+++
T Consensus 246 ~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ly 325 (477)
T KOG0332|consen 246 DTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLY 325 (477)
T ss_pred hcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHH
Confidence 4 568888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEc
Q 015158 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 274 ~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~ 353 (412)
.....+..||||.++..|..+++.+.+.|..+..+||++...+|..++++|+.|..+|||+|+.+.+|+|++.++.||.+
T Consensus 326 g~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNy 405 (477)
T KOG0332|consen 326 GLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNY 405 (477)
T ss_pred hhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEec
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC------CChhhHHHhhhhcccCCCCceEEEEecc-CcHHHHHHHHHHhccccccC-Chhh
Q 015158 354 DLP------TQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEEL-PANV 408 (412)
Q Consensus 354 ~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~ 408 (412)
++| .+...|++|+||+||.|+.|.++-+++. .....++.+++++...+..+ |+++
T Consensus 406 dlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~ 468 (477)
T KOG0332|consen 406 DLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDL 468 (477)
T ss_pred CCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccH
Confidence 998 4688999999999999999999988866 57778889999996654443 3443
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-48 Score=369.08 Aligned_cols=324 Identities=21% Similarity=0.289 Sum_probs=254.8
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.+||..|+|+|.++++.+++|+++++.+|||+|||++|+++++.. .+.+||++|+++|+.|+.+.+..+ +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 479999999999999999999999999999999999999988752 247999999999999999988765 6
Q ss_pred cEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHH-HcCCC-CCCCceEEEEeCCchhhccC--cHHHHHH---
Q 015158 136 VKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDML-RRQSL-RPDNIRIFVLDEADEMLSRG--FKDQIYD--- 204 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~-~~~~~-~~~~~~~iiiDE~h~~~~~~--~~~~~~~--- 204 (412)
+.+..+.++....... ....+.++|+++||+.+.... ....+ ...++++||+||||++.+|+ |...+..
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 7777787776644322 223456899999999875321 00111 34688999999999998876 4444443
Q ss_pred HHHhCCCCceEEEEeecCChHHHHHHHHhcC--CCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHH-hcCCCcE
Q 015158 205 IFQLLPPKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE-TLAITQS 281 (412)
Q Consensus 205 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~k~ 281 (412)
+...+ ++.+++++|||+++.....+...++ .+..+.. ....+++..... .........+..++. ....+++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~--~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR--RKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE--eCCccHHHHHHHHHHHhcCCCce
Confidence 34444 4778999999999877666665543 3332222 122233322222 222234455666665 4455667
Q ss_pred EEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhh
Q 015158 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 361 (412)
Q Consensus 282 lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~ 361 (412)
||||++++.++.+++.|++.++.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|++++||+++.|.|...
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~ 309 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMES 309 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcccCCCCceEEEEeccCcHHHHHHHHH
Q 015158 362 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395 (412)
Q Consensus 362 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 395 (412)
|.||+||+||.|.+|.|++++++.|...++.+..
T Consensus 310 y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 310 YYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred HHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 9999999999999999999999988876665543
No 30
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-48 Score=377.87 Aligned_cols=338 Identities=21% Similarity=0.257 Sum_probs=262.6
Q ss_pred CCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 44 MGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 44 ~~l~~~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
++....+...++. +|+..++|.|+++++.++.|+++++.+|||+|||+||+++++.. .+.+|||+|+++|+.+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQD 515 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHH
Confidence 4455566666654 79999999999999999999999999999999999999999853 2479999999999987
Q ss_pred HHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc------CCCcEEEeChHHHHH--HHHcC--CC-CCCCceEEEEeCCc
Q 015158 123 IEKVMRALGDYLGVKVHACVGGTSVREDQRILS------SGVHVVVGTPGRVFD--MLRRQ--SL-RPDNIRIFVLDEAD 191 (412)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iii~T~~~l~~--~~~~~--~~-~~~~~~~iiiDE~h 191 (412)
+...+... ++.+..+.++.........+. +.++|+++||+++.. .+.+. .+ ....+.+|||||||
T Consensus 516 QV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAH 591 (1195)
T PLN03137 516 QIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAH 591 (1195)
T ss_pred HHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcch
Confidence 77766654 788888888876554433221 568999999999752 11111 11 12457899999999
Q ss_pred hhhccC--cHHHHHHH--HHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHH
Q 015158 192 EMLSRG--FKDQIYDI--FQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLE 267 (412)
Q Consensus 192 ~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (412)
++++|+ |+..+..+ +....++.+++++|||++......+...++....... ......+++... ..........
T Consensus 592 cVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~--Vv~k~kk~le 668 (1195)
T PLN03137 592 CVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS--VVPKTKKCLE 668 (1195)
T ss_pred hhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE--EeccchhHHH
Confidence 999887 66655543 2233347789999999998888777666543222211 122233333222 2222222345
Q ss_pred HHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC
Q 015158 268 TLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 346 (412)
Q Consensus 268 ~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~ 346 (412)
.+..++... ..+++||||.+++.++.+++.|++.|+.+..+||+|++.+|..++++|.+|+++|||||.++++|||+|+
T Consensus 669 ~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPD 748 (1195)
T PLN03137 669 DIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPD 748 (1195)
T ss_pred HHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccC
Confidence 566666543 3578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 347 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 347 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
+++||+++.|.|...|.|++||+||.|.+|.|++|+...|...+..+.
T Consensus 749 VR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 749 VRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887776555544
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-48 Score=344.84 Aligned_cols=358 Identities=29% Similarity=0.478 Sum_probs=298.2
Q ss_pred ccccccCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc------CCCceeE
Q 015158 38 YDTFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY------GLVECQA 110 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~------~~~~~~~ 110 (412)
...|..+++++.+...|+. +++..|+..|+++++.+++|++++|.++||||||++|++++...+.. ...+..+
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~A 214 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYA 214 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceE
Confidence 3578899999999999987 79999999999999999999999999999999999999999987743 2346789
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcccC-cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEe
Q 015158 111 LVLAPTRELAQQIEKVMRALGDYLG-VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLD 188 (412)
Q Consensus 111 lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiD 188 (412)
||++||++|+.|.++.+.++...+. +....+.||...+.....+..+..|+|+||++|..++.+ ..+.+..++++|+|
T Consensus 215 LVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 215 LVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 9999999999999999999876654 345567788888777888889999999999999999987 45667889999999
Q ss_pred CCchhhccCcHHHHHHHHHhCC-------------CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc---------
Q 015158 189 EADEMLSRGFKDQIYDIFQLLP-------------PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--------- 246 (412)
Q Consensus 189 E~h~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------- 246 (412)
|++++.+.+|...+..|+..+. ...+.+++|||+...+..+...-+.+|+.+..+...
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999999999999988887762 236789999999888877777778888877622111
Q ss_pred ----------------cccCCceEEEEEeccchhhHHHHHHHH----HhcCCCcEEEEEcchhHHHHHHHHHhcC-----
Q 015158 247 ----------------LTLEGIKQFHVNVEKEEWKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSR----- 301 (412)
Q Consensus 247 ----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~~~~~L~~~----- 301 (412)
..+++..+.+..++... ..-.|..++ +.....|+|||+.+.+.++.=+..|.+.
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 11223344455555432 333333333 3334568999999999999888877642
Q ss_pred -----------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHH
Q 015158 302 -----------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 364 (412)
Q Consensus 302 -----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q 364 (412)
+..+..+||+|.+++|..+++.|...+-.||+||++.++|+|+|.+.+||.++.|.+.++|++
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 365 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 365 ~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
|+||..|.|..|.+++|+.+.+.++++.++..
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999877666544
No 32
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-49 Score=338.09 Aligned_cols=374 Identities=33% Similarity=0.555 Sum_probs=324.1
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhc--------cCCCc
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLD--------YGLVE 107 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~--------~~~~~ 107 (412)
+|..+|..+.++..+.+.|+..|+..|+|.|.+.++.+++|++.+=.+-||||||++|.+++..... ....+
T Consensus 167 PPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 4566899999999999999999999999999999999999999999999999999999887764431 22356
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhccc------CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYL------GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
+..||+||+++|+.|+.+.+..+.... .+....+.|+............+.+|+|+||.+|..++.+....++-
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~ 326 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDA 326 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHH
Confidence 789999999999999999887765433 35566788888888888888899999999999999999988888888
Q ss_pred ceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEecc
Q 015158 182 IRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK 261 (412)
Q Consensus 182 ~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (412)
.+++.+|||+++.+.+|...++.++..+..+.|.+++|||++.....+...-+-+|+.+.+.+.....-++.+-...+.
T Consensus 327 CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVk- 405 (610)
T KOG0341|consen 327 CRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVK- 405 (610)
T ss_pred HHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHH-
Confidence 8999999999999999999999999999999999999999999999999999999999988876655543322222221
Q ss_pred chhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCC
Q 015158 262 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341 (412)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G 341 (412)
.+.+.-.+.+.+++.. .++||||..+..++.++++|--.|..++.+||+-.+++|...++.|+.|+.+|||+|+..+.|
T Consensus 406 qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 406 QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred hhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 2345555566666544 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC-cHHHHHHHHHHhccccccCChhhhhc
Q 015158 342 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 342 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
+|+|++.|||.++.|.....|++|+||.||.|+.|.+.+|+... +...+-.+...+...-+++|+-++.|
T Consensus 485 LDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred CCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 99999999999999999999999999999999999999999875 56667777778877778888766554
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.6e-47 Score=368.23 Aligned_cols=328 Identities=20% Similarity=0.276 Sum_probs=257.5
Q ss_pred HHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 50 LLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 50 ~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
....|+. +||..++|.|.++++.++.|+++++.+|||+|||++|+++++.. .+.+||++|+++|+.|+.+.+.
T Consensus 13 ~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~ 86 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLL 86 (607)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHH
Confidence 3344443 69999999999999999999999999999999999999888753 2369999999999999999888
Q ss_pred HhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHH-
Q 015158 129 ALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQ- 201 (412)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~- 201 (412)
.. ++.+..+.+........ ....+..+++++||+.+........+...++++||+||||++.+|+ |...
T Consensus 87 ~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 87 AN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred Hc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 75 67777777766544332 2234567899999999864222223334578999999999998876 4433
Q ss_pred --HHHHHHhCCCCceEEEEeecCChHHHHHHHHhcC--CCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcC
Q 015158 202 --IYDIFQLLPPKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLA 277 (412)
Q Consensus 202 --~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (412)
+..+...+ ++.+++++|||+++.....+...+. .+.... . ....+++..... ........+..++....
T Consensus 163 ~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~--~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~ 235 (607)
T PRK11057 163 AALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-S--SFDRPNIRYTLV---EKFKPLDQLMRYVQEQR 235 (607)
T ss_pred HHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-C--CCCCCcceeeee---eccchHHHHHHHHHhcC
Confidence 33444444 4788999999999877665555443 332222 1 112233322221 11234556667777777
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 357 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~ 357 (412)
.+++||||++++.++.+++.|++.++.+..+|++++..+|..+++.|.+|+.+|||+|+++++|+|+|++++||+++.|.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 358 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
|...|.|++||+||.|.+|.|++|+++.|...++.+.
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999998876655443
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.1e-46 Score=364.26 Aligned_cols=323 Identities=22% Similarity=0.303 Sum_probs=258.1
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
+||..++|.|.++++.++.|+++++.+|||+|||++|+++++.. .+.++|++|+++|+.|+.+.+..+ ++
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~----gi 78 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA----GV 78 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc----CC
Confidence 79999999999999999999999999999999999999888742 236899999999999999988885 67
Q ss_pred EEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHHHHH---HHH
Q 015158 137 KVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYD---IFQ 207 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~---i~~ 207 (412)
.+..++++....... ....+..+|+++||+++........+...++++||+||||++..|+ |...+.. +..
T Consensus 79 ~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 79 AAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 788888776654432 2344678999999999865333333445689999999999998876 5544443 344
Q ss_pred hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcc
Q 015158 208 LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNT 287 (412)
Q Consensus 208 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~ 287 (412)
.++ +.+++++|||+++.....+...++........ .....+++..... ....+...+.+++.....+++||||++
T Consensus 159 ~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~IIf~~s 233 (591)
T TIGR01389 159 RFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGIIYASS 233 (591)
T ss_pred hCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEEEEECc
Confidence 454 44599999999988777777665422111111 1122233322222 223456677777877777899999999
Q ss_pred hhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhh
Q 015158 288 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 367 (412)
Q Consensus 288 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 367 (412)
++.++.+++.|...++.+..+||+++.++|..+++.|.+|+++|||+|+++++|+|+|++++||+++.|.|...|.|++|
T Consensus 234 r~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~G 313 (591)
T TIGR01389 234 RKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAG 313 (591)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 368 RSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 368 R~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
|+||.|.++.|++++++.|...++.+.
T Consensus 314 RaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 314 RAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred cccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999888766544433
No 35
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-46 Score=359.09 Aligned_cols=382 Identities=34% Similarity=0.545 Sum_probs=350.8
Q ss_pred CCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----
Q 015158 30 FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----- 104 (412)
Q Consensus 30 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~----- 104 (412)
.-.....+...|.+.+++..++.-++.++|..|+|.|.+||++++.|+++|.++-||||||++|+++++.+....
T Consensus 356 ~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~ 435 (997)
T KOG0334|consen 356 KGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE 435 (997)
T ss_pred ccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh
Confidence 344456778899999999999999999999999999999999999999999999999999999999999766433
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCce-
Q 015158 105 LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR- 183 (412)
Q Consensus 105 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~- 183 (412)
..++.++|++||++|+.|+.++++.|+...++.+.+.+|+.........+..++.|+||||.++...+........+++
T Consensus 436 gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR 515 (997)
T KOG0334|consen 436 GDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRR 515 (997)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccc
Confidence 2367899999999999999999999999999999999999999998888888899999999999888766554444554
Q ss_pred --EEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEecc
Q 015158 184 --IFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK 261 (412)
Q Consensus 184 --~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (412)
++|+||++++++.+|..+...|+..+++..|.+.+|||.+..+.......+..|+.+.+.........+...+.....
T Consensus 516 ~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 516 VTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred cceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecC
Confidence 999999999999999999999999999999999999999999888888999999998888888888888888888887
Q ss_pred chhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcC
Q 015158 262 EEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 340 (412)
Q Consensus 262 ~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~ 340 (412)
...+...|.+++... ..+++||||.+.+.|..+.+.|.+.++.+..+||+.+..+|+..++.|+++...+||+|+.+.+
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvar 675 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVAR 675 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhc
Confidence 788888888888776 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhc
Q 015158 341 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 341 G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
|+|++.+..||+++.|....+|++|.||+||.|..|.|++|.++.+.++...+.++|...-+++|+.+..+
T Consensus 676 GLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l 746 (997)
T KOG0334|consen 676 GLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQAL 746 (997)
T ss_pred ccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999877654
No 36
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-46 Score=370.41 Aligned_cols=352 Identities=22% Similarity=0.316 Sum_probs=261.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.|+++++++.+.+.+...|+.+|+|+|.++++. +..|+++++++|||||||+++.++++..+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 578899999999999999999999999999998 7789999999999999999999999988753 358999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 119 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
|+.|+.+.++.+.. .++.+..++|+...... ....++|+|+||+++..++.+.....++++++|+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998643 47889999987654321 224579999999999888876555567899999999999888777
Q ss_pred HHHHHHHHHhC---CCCceEEEEeecCChHHHHHHHHhcCCCeEE----------Eec-CCccccCCceEEEEEeccchh
Q 015158 199 KDQIYDIFQLL---PPKIQVGVFSATMPPEALEITRKFMNKPVRI----------LVK-RDELTLEGIKQFHVNVEKEEW 264 (412)
Q Consensus 199 ~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (412)
+..+..++..+ .++.|++++|||+++. .+.. .+++..... ... ........ ............
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~ 231 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDD 231 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchH
Confidence 77776665443 4678999999999752 2333 333221100 000 00000000 000000001111
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC------------------------------------CCeeEEe
Q 015158 265 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------------------DHTVSAT 308 (412)
Q Consensus 265 ~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~------------------------------------~~~~~~~ 308 (412)
....+.+.+. ..+++||||++++.++.+++.|.+. ...+.++
T Consensus 232 ~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 232 TLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred HHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 2223333332 4579999999999999888887543 1368899
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----cc-----CCCChhhHHHhhhhcccCCCC--ce
Q 015158 309 HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK--GV 377 (412)
Q Consensus 309 ~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~g~~--g~ 377 (412)
|++++..+|..+++.|++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+ |.
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~ 389 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGE 389 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999988885 33 578999999999999999865 88
Q ss_pred EEEEeccCcHHHHHHHHHHhccccccC
Q 015158 378 AINFVTRDDERMLFDIQKFYNVVIEEL 404 (412)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (412)
++++....+. ...-+.+|+....+++
T Consensus 390 ~ii~~~~~~~-~~~~~~~~l~~~~~~i 415 (737)
T PRK02362 390 AVLLAKSYDE-LDELFERYIWADPEDV 415 (737)
T ss_pred EEEEecCchh-HHHHHHHHHhCCCCce
Confidence 8888865432 2222445554344343
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.8e-46 Score=334.93 Aligned_cols=350 Identities=33% Similarity=0.572 Sum_probs=324.0
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
...+|+.+.+...+...|...+|..|++.|..|++.++.+-+.||++..|+|||++|...+...+........++|++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 34588999999999999999999999999999999999999999999999999999988888888777677889999999
Q ss_pred HHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 117 RELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
++++.|+.+.+.+++..+ |..+..+.||+....+...+. .++|+|+||+++..+++...++..+++++|+|||+.+.+
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~ 181 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMD 181 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhc
Confidence 999999999999998755 889999999998776655444 458999999999999999999999999999999999997
Q ss_pred -cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccch-------hhHH
Q 015158 196 -RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEE-------WKLE 267 (412)
Q Consensus 196 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 267 (412)
..|...+..++..+|...|++++|||.+.++...+..++.+|..+.........-+++++++...... .+..
T Consensus 182 t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq 261 (980)
T KOG4284|consen 182 TESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQ 261 (980)
T ss_pred hhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHH
Confidence 66999999999999999999999999999999999999999999999999999999999998887652 3567
Q ss_pred HHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC
Q 015158 268 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 268 ~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
.|.++++..+-...||||+....|+-++.+|...|+++-+++|.|++.+|-.+++.+++-..+|||+|+.-.+|+|-+.+
T Consensus 262 ~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~v 341 (980)
T KOG4284|consen 262 KLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNV 341 (980)
T ss_pred HHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCcccc
Confidence 77788888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
+.||.++.|-+...|.+||||+||.|..|.+++|+....+
T Consensus 342 NLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 342 NLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred ceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999987655
No 38
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-47 Score=335.04 Aligned_cols=362 Identities=28% Similarity=0.428 Sum_probs=297.1
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccC----------
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYG---------- 104 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~---------- 104 (412)
.-...|..+.++..+.++|...||..|++.|...++.+..| .+++=.|.||||||++|-++++..+...
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567889999999999999999999999999999999998 7899999999999999999999844221
Q ss_pred -CCce--eEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC---C
Q 015158 105 -LVEC--QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL---R 178 (412)
Q Consensus 105 -~~~~--~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~---~ 178 (412)
...+ -.||++||++|+.|+.+.+...+..+++.+..++||.....+...+...++|||+||++|..++..... +
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 1123 499999999999999999999999999999999999999888888988999999999999998876543 3
Q ss_pred CCCceEEEEeCCchhhccCcHHHHHHHHHhCC-----CCceEEEEeecCChHH---------------------HHHHHH
Q 015158 179 PDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-----PKIQVGVFSATMPPEA---------------------LEITRK 232 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~~---------------------~~~~~~ 232 (412)
+..+.++|+||+++++..++...+..++..+. ...|.+.+|||+.-.. ..++..
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 56788999999999999999999998888775 3568899999985211 111111
Q ss_pred --hcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecC
Q 015158 233 --FMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 310 (412)
Q Consensus 233 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~ 310 (412)
+.++|..+...+.......+......++. ..+.-.++.++..++ |++|||||++..+.+++-+|+..++....+|+
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~-~eKD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA 495 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPP-LEKDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHA 495 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCc-cccceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhH
Confidence 22444444443333322222222222211 112222222333333 79999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHH
Q 015158 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERML 390 (412)
Q Consensus 311 ~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 390 (412)
.|.+.+|-+.+++|++....|||||+++.+|+|+|++.|||||-.|.+...|++|.||..|++..|..++++.+.+...+
T Consensus 496 ~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred HHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhcc
Q 015158 391 FDIQKFYNV 399 (412)
Q Consensus 391 ~~~~~~~~~ 399 (412)
.++.+-++.
T Consensus 576 ~KL~ktL~k 584 (731)
T KOG0347|consen 576 KKLCKTLKK 584 (731)
T ss_pred HHHHHHHhh
Confidence 888887775
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.6e-45 Score=350.12 Aligned_cols=333 Identities=21% Similarity=0.286 Sum_probs=271.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----CCceeEEEEcCCHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVECQALVLAPTRELA 120 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~L~ 120 (412)
+++.+.+++... |.+|+|.|++|++.+.+|+|+++.+|||||||.++++++++.+... ..+-.+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678899999887 8889999999999999999999999999999999999999988665 2245799999999999
Q ss_pred HHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC--CCCCceEEEEeCCchhhccCc
Q 015158 121 QQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL--RPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 121 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~iiiDE~h~~~~~~~ 198 (412)
+++.+.+..+....|+++...+|+++.........++++|+++|||+|.-++....+ .+.++.+||+||+|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999998888888889999999999999877655332 357899999999999886654
Q ss_pred H----HHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCC--eEEEecCCccccCCceEEEEEec------cchhhH
Q 015158 199 K----DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFHVNVE------KEEWKL 266 (412)
Q Consensus 199 ~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 266 (412)
+ -.+.++....+ ..|.|++|||..+ .....+.+.+.. ..+.... ......+........ ......
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~-~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVS-AAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcc-cCCcceEEEEecCCccccccchhHHHH
Confidence 4 34455555555 8999999999974 345555555543 2222222 211222222211111 112345
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCC-CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 267 ~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
..+.++++++. .+|||+|++..++.++..|++.+ ..+..+||.++.+.|..++++|++|+++++|||+.++-|+|+.
T Consensus 244 ~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 244 ERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 56666777765 89999999999999999999987 8999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccC-CCCceEEEEecc
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTR 384 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~ 384 (412)
+++.||+++.|.+.+.+.||+||+|+. |...+++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999986 555677766666
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.4e-44 Score=360.16 Aligned_cols=334 Identities=22% Similarity=0.313 Sum_probs=246.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC------CCceeEEEEcCCHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVECQALVLAPTREL 119 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L 119 (412)
+++.+.+.+.. +|..|+|+|.++++.+++|+++++++|||||||++++++++..+... ..+.++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 45777777765 78889999999999999999999999999999999999999876531 234579999999999
Q ss_pred HHHHHHHHHH-------hh----ccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC--CCCCceEE
Q 015158 120 AQQIEKVMRA-------LG----DYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL--RPDNIRIF 185 (412)
Q Consensus 120 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~i 185 (412)
+.|+.+.+.. +. ... ++.+...+|+............+++|+|+||++|..++....+ .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876653 22 122 6788899999887776666777889999999999877655433 35789999
Q ss_pred EEeCCchhhccCcHHH----HHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCC-------CeEEEecCCccccCCceE
Q 015158 186 VLDEADEMLSRGFKDQ----IYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNK-------PVRILVKRDELTLEGIKQ 254 (412)
Q Consensus 186 iiDE~h~~~~~~~~~~----~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 254 (412)
|+||+|.+.+..+... +.++....+...+++++|||+++. ......+.+. +..+. .........+..
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv-~~~~~k~~~i~v 254 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIV-DARFVKPFDIKV 254 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEE-ccCCCccceEEE
Confidence 9999999887654443 344444444678999999999752 2333323221 11111 111100000100
Q ss_pred EE-----EEeccc---hhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC------CCeeEEecCCCCHHHHHHH
Q 015158 255 FH-----VNVEKE---EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDII 320 (412)
Q Consensus 255 ~~-----~~~~~~---~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~~~~~~r~~~ 320 (412)
.. ...... ......+.++++. .+++||||++++.|+.++..|++. +..+..+||+++.++|..+
T Consensus 255 ~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~v 332 (876)
T PRK13767 255 ISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEV 332 (876)
T ss_pred eccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHH
Confidence 00 000000 1112233333333 468999999999999999999873 4679999999999999999
Q ss_pred HHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC-CCCceEEEEecc
Q 015158 321 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTR 384 (412)
Q Consensus 321 ~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~ 384 (412)
++.|++|++++||||++++.|+|+|++++||+++.|.|...|+||+||+||. |..+.++++...
T Consensus 333 e~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 333 EEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999997 444555555543
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.4e-45 Score=336.37 Aligned_cols=327 Identities=23% Similarity=0.287 Sum_probs=261.2
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
+|+..+++-|.+++..++.++++++.+|||+|||+||.+|++-. . +-+|||.|..+|++++.+.+... |+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--~----G~TLVVSPLiSLM~DQV~~l~~~----Gi 82 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--E----GLTLVVSPLISLMKDQVDQLEAA----GI 82 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--C----CCEEEECchHHHHHHHHHHHHHc----Cc
Confidence 68999999999999999999999999999999999999988754 2 36999999999999999999886 77
Q ss_pred EEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHHHHHH---HH
Q 015158 137 KVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYDI---FQ 207 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~i---~~ 207 (412)
.+..+.+..+..... ....+..++++.+||.+........+....+.+++|||||+++.|+ |+..+..+ ..
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~ 162 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRA 162 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHh
Confidence 888887775554443 3334568999999999865433333334578999999999999997 76655554 45
Q ss_pred hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcc
Q 015158 208 LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNT 287 (412)
Q Consensus 208 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~ 287 (412)
.++ +.+++++|||.++.+...+...++-.... ......+++++............+...+.+ ......+..||||.|
T Consensus 163 ~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~-~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~s 239 (590)
T COG0514 163 GLP-NPPVLALTATATPRVRDDIREQLGLQDAN-IFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLT 239 (590)
T ss_pred hCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcc-eEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEee
Confidence 555 78899999999998888887766533311 111122334444333333322223333332 224455779999999
Q ss_pred hhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhh
Q 015158 288 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 367 (412)
Q Consensus 288 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 367 (412)
++.++.+++.|.+.|+.+..||++|+.++|..+.++|.+++.+|+|||.++++|||-|+++.|||++.|.|...|.|-+|
T Consensus 240 Rk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~G 319 (590)
T COG0514 240 RKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETG 319 (590)
T ss_pred HHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 368 RSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 368 R~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
||||.|.+..|++++++.|....+.+.+.
T Consensus 320 RAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 320 RAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred hccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999997655544443
No 42
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8e-46 Score=318.56 Aligned_cols=364 Identities=32% Similarity=0.513 Sum_probs=335.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-CCceeEEEEcCC
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVECQALVLAPT 116 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~ 116 (412)
.+.|+.++|+..+.+++...||..|+|.|++-++.++++++++-.+-||||||.+++++++..+... ..+.+++++.|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 5789999999999999999999999999999999999999999999999999999999999988654 345699999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc
Q 015158 117 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 196 (412)
+.|+.|..+.++.++..++....++.|+...+.++..+..++|||++||.++.+......+.++.+.+||+||++.++..
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999998888888999999999999888877788899999999999999999
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc
Q 015158 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL 276 (412)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (412)
+|..++.+++..++...|.+++|||++..+.+..+..+..|..+..+.+..-.+.....+..+.. .++...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~-a~K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK-AEKEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-HHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999877766666666666665555 56777777777775
Q ss_pred C-CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 277 A-ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 277 ~-~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
. .+.++||+.+..+++.+...|++.|+.+..++|.+.+..|..-..+|..++..++|+|+...+|+|+|-.+.||.++.
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~ 338 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDF 338 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccC
Confidence 3 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccc
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 402 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
|.+...|++|+||+.|+|..|.+|.++.+.+..++-.+.-++...+.
T Consensus 339 p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~ 385 (529)
T KOG0337|consen 339 PPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLI 385 (529)
T ss_pred CCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCcee
Confidence 99999999999999999999999999999999999999999887553
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-44 Score=358.29 Aligned_cols=349 Identities=19% Similarity=0.246 Sum_probs=261.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
+|+++++++.+.+.+...|+.+|+|+|.++++. +..|+++++++|||||||.++.++++..+.. .+.+++|++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHH
Confidence 577889999999999999999999999999986 7889999999999999999999999887653 2458999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 119 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
|+.|+.+.+..+. ..+..+..++|+...... ....++|+|+||+++..++.+.....+++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 358889999988764322 234679999999999888876555578899999999999988888
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCce--EEEEEeccc-----hhhHHHHHH
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK--QFHVNVEKE-----EWKLETLCD 271 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~l~~ 271 (412)
...+..++..+....|++++|||+++. .+.. .+++........+.......+. ......... ......+.+
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~-~~la-~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA-EELA-EWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYD 233 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH-HHHH-HHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHH
Confidence 889999999888899999999999753 3333 3444322111111000000000 000000000 111223334
Q ss_pred HHHhcCCCcEEEEEcchhHHHHHHHHHhcC---------------------------------CCeeEEecCCCCHHHHH
Q 015158 272 LYETLAITQSVIFVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQNTRD 318 (412)
Q Consensus 272 ~~~~~~~~k~lif~~~~~~~~~~~~~L~~~---------------------------------~~~~~~~~~~~~~~~r~ 318 (412)
.++ .++++||||++++.++.++..|... ...+..+|+++++++|.
T Consensus 234 ~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 234 AVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred HHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 443 3468999999999998777666321 23589999999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE-------ccC-CCChhhHHHhhhhcccCC--CCceEEEEeccCcHH
Q 015158 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------YDL-PTQPENYLHRIGRSGRFG--RKGVAINFVTRDDER 388 (412)
Q Consensus 319 ~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~-------~~~-~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~ 388 (412)
.+++.|++|.++|||||++++.|+|+|..++||. ++. +.+..+|.||+||+||.| ..|.++++....+.+
T Consensus 312 ~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~ 391 (720)
T PRK00254 312 LIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS 391 (720)
T ss_pred HHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchH
Confidence 9999999999999999999999999999998884 222 235679999999999975 568999888765432
Q ss_pred HHHHHHHHhccc
Q 015158 389 MLFDIQKFYNVV 400 (412)
Q Consensus 389 ~~~~~~~~~~~~ 400 (412)
. -+++|+...
T Consensus 392 ~--~~~~~~~~~ 401 (720)
T PRK00254 392 K--LMERYIFGK 401 (720)
T ss_pred H--HHHHHHhCC
Confidence 2 244555443
No 44
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-45 Score=319.06 Aligned_cols=360 Identities=28% Similarity=0.445 Sum_probs=290.2
Q ss_pred ccccccCCCCHHHHHH----------HHHCCCCCChHHHHhhhhhhhc---------CccEEEECCCCCCchhHhHHHHH
Q 015158 38 YDTFDAMGLQENLLRG----------IYAYGFEKPSAIQQRGIVPFCK---------GLDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~----------l~~~~~~~l~~~Q~~a~~~~~~---------~~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
...|+.+++++..... +..+++..+.|.|..+++.++. +++++|.+|||||||++|.+++.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3456666666555444 8888999999999999999863 47999999999999999999999
Q ss_pred HhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc-CCC----cEEEeChHHHHHHH
Q 015158 99 QQLDYG-LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS-SGV----HVVVGTPGRVFDML 172 (412)
Q Consensus 99 ~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~iii~T~~~l~~~~ 172 (412)
+.+... ...-+++||+|++.|+.|.++.|..++...++.|..+.|....+.....+. ... +|+|+||++|..++
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 988765 344689999999999999999999999999999999999888776655444 334 89999999999999
Q ss_pred Hc-CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC----------------------------------CCceEEE
Q 015158 173 RR-QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP----------------------------------PKIQVGV 217 (412)
Q Consensus 173 ~~-~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~----------------------------------~~~~~i~ 217 (412)
.+ ..+++++++++|+|||+++.+..|..-+..+...+. +....++
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 84 678899999999999999987665544444443332 2234677
Q ss_pred EeecCChHHHHHHHHhcCCCeEEEecC----CccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHH
Q 015158 218 FSATMPPEALEITRKFMNKPVRILVKR----DELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDW 293 (412)
Q Consensus 218 ~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~ 293 (412)
+|||+..+......--++.|..+.... ....+..+.+....... ..+...+..++......++|||++|.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 888877665566665566665444442 22333444444444433 4466778888888888999999999999999
Q ss_pred HHHHHh----cCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhc
Q 015158 294 LTDKMR----SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 369 (412)
Q Consensus 294 ~~~~L~----~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~ 369 (412)
++..|+ .....+-.++|.++...|.+.++.|..|++.+|||++++.+|+|+.++++||.+++|.+...|++|+||.
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999987 3355667789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeccCcHHHHHHHHHHhc
Q 015158 370 GRFGRKGVAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 370 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
+|+|+.|.|+.+++..+...+.++.+...
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHHhc
Confidence 99999999999999998887766654443
No 45
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=324.03 Aligned_cols=373 Identities=32% Similarity=0.455 Sum_probs=324.5
Q ss_pred hcccccc----CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----CCc
Q 015158 37 VYDTFDA----MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVE 107 (412)
Q Consensus 37 ~~~~f~~----~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-----~~~ 107 (412)
+..+|.. ......+++.+...+|..|+|.|++|++.++++++++.++|||+|||++|.++++..+... ..+
T Consensus 130 ~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~g 209 (593)
T KOG0344|consen 130 PLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVG 209 (593)
T ss_pred ccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccc
Confidence 3445554 3467888999999999999999999999999999999999999999999999999887543 345
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhh--cccCcEEEEEEcCcchHHHH-HHhcCCCcEEEeChHHHHHHHHcCC--CCCCCc
Q 015158 108 CQALVLAPTRELAQQIEKVMRALG--DYLGVKVHACVGGTSVREDQ-RILSSGVHVVVGTPGRVFDMLRRQS--LRPDNI 182 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iii~T~~~l~~~~~~~~--~~~~~~ 182 (412)
-+++|+.|+++|+.|.++++.++. ...+..+..+.......... ......++|++.||..+...+.... ..+.++
T Consensus 210 l~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 210 LRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred eEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhhee
Confidence 689999999999999999999998 55555555544432221111 1112347899999999988887665 567889
Q ss_pred eEEEEeCCchhhcc-CcHHHHHHHHHhCC-CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEec
Q 015158 183 RIFVLDEADEMLSR-GFKDQIYDIFQLLP-PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVE 260 (412)
Q Consensus 183 ~~iiiDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (412)
.++|+||++.+... .|..++..++..+. ++..+-++|||.+....+.+......+..+.+...+.....+.+-...+.
T Consensus 290 ~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~g 369 (593)
T KOG0344|consen 290 EWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCG 369 (593)
T ss_pred eeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeee
Confidence 99999999999988 89999999998875 46677889999999999999999999998888887777777777777788
Q ss_pred cchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHH-hcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCc
Q 015158 261 KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339 (412)
Q Consensus 261 ~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 339 (412)
....+.-.+.+++...-..+++||+++.+.|..+...| .-.++++.++||+.+..+|+..+++|+.|++++|+||+.++
T Consensus 370 se~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~ 449 (593)
T KOG0344|consen 370 SEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLA 449 (593)
T ss_pred cchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhh
Confidence 88889999999999988889999999999999999999 56688999999999999999999999999999999999999
Q ss_pred CCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhh
Q 015158 340 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVA 409 (412)
Q Consensus 340 ~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (412)
+|+|+.+++.||.++.|.+...|++|+||.||.|+.|.+++||+..|...++.+...+...--++|.++-
T Consensus 450 RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 450 RGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred ccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999889998764
No 46
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.4e-44 Score=351.57 Aligned_cols=345 Identities=19% Similarity=0.268 Sum_probs=254.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
.|+++++++.+.+.+...++. |+++|.++++.+.+++++++++|||||||+++.++++..+..+ .+++|++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~---~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAG---LKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhC---CcEEEEechHHH
Confidence 467889999999999999998 9999999999999999999999999999999999998877643 489999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcH
Q 015158 120 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFK 199 (412)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 199 (412)
+.|+++++.++. ..+..+...+|+...... ....++|+|+||+++..++.++...++++++||+||+|.+.+.++.
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 357888888887654322 2245799999999999888776666788999999999998877766
Q ss_pred HHHHHHHH---hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEE-----EeccchhhHHHHHH
Q 015158 200 DQIYDIFQ---LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVEKEEWKLETLCD 271 (412)
Q Consensus 200 ~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~ 271 (412)
..+..++. ..+++.+++++|||+++. .+.. .+++...... ...+..+..... ...........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la-~wl~~~~~~~----~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA-NELA-QWLNASLIKS----NFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHH-HHhCCCccCC----CCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 66666544 345678999999999652 3333 3443222110 001111110000 00000101111223
Q ss_pred HHHh--cCCCcEEEEEcchhHHHHHHHHHhcC-------------------------CCeeEEecCCCCHHHHHHHHHHH
Q 015158 272 LYET--LAITQSVIFVNTRRKVDWLTDKMRSR-------------------------DHTVSATHGDMDQNTRDIIMREF 324 (412)
Q Consensus 272 ~~~~--~~~~k~lif~~~~~~~~~~~~~L~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f 324 (412)
++.. ...+++||||++++.++.+++.|.+. ...+..+|++++.++|..+++.|
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f 307 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHH
Confidence 3332 24578999999999999999888653 12478899999999999999999
Q ss_pred hcCCCcEEEEcCCCcCCCCCCCCCEEEEcc---------CCCChhhHHHhhhhcccCCC--CceEEEEeccCcHHHHHHH
Q 015158 325 RSGSSRVLITTDLLARGIDVQQVSLVINYD---------LPTQPENYLHRIGRSGRFGR--KGVAINFVTRDDERMLFDI 393 (412)
Q Consensus 325 ~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~---------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~~~~~~~~~ 393 (412)
++|.++|||||+++++|+|+|...+|| .+ .|.|..+|.||+||+||.|. .|.++++....+. ...+
T Consensus 308 ~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~--~~~~ 384 (674)
T PRK01172 308 RNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPAS--YDAA 384 (674)
T ss_pred HcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCccc--HHHH
Confidence 999999999999999999999765444 33 25688899999999999985 5678877654432 2235
Q ss_pred HHHhcccc
Q 015158 394 QKFYNVVI 401 (412)
Q Consensus 394 ~~~~~~~~ 401 (412)
.+++....
T Consensus 385 ~~~l~~~~ 392 (674)
T PRK01172 385 KKYLSGEP 392 (674)
T ss_pred HHHHcCCC
Confidence 56664433
No 47
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.9e-42 Score=342.77 Aligned_cols=318 Identities=20% Similarity=0.264 Sum_probs=245.5
Q ss_pred HHHHHH-HHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHH
Q 015158 49 NLLRGI-YAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQ 121 (412)
Q Consensus 49 ~~~~~l-~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 121 (412)
...+.+ ..++|. |++.|.+|++.+..+ .+.+++++||+|||.+++.+++..+..+ .+++|++||++|+.
T Consensus 439 ~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g---~qvlvLvPT~~LA~ 514 (926)
T TIGR00580 439 EWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG---KQVAVLVPTTLLAQ 514 (926)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC---CeEEEEeCcHHHHH
Confidence 333434 446886 999999999999875 6899999999999999999998887654 58999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHHH----HhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 122 QIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 122 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
|+++.+.++....++.+..+++......... ...++++|+|+||..+ .....+++++++|+||+|++
T Consensus 515 Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf---- 585 (926)
T TIGR00580 515 QHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF---- 585 (926)
T ss_pred HHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc----
Confidence 9999999988777888888888765443322 2345689999998533 23456788999999999984
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcC
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLA 277 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 277 (412)
.......+..++.+.+++++||||.+...........++..+...... ...+...+..... ......+...+ ..
T Consensus 586 -gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~-~~i~~~i~~el--~~ 659 (926)
T TIGR00580 586 -GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDP-ELVREAIRREL--LR 659 (926)
T ss_pred -chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCH-HHHHHHHHHHH--Hc
Confidence 233445556677789999999999876655544444444444433222 2223433332221 11112222222 24
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
+++++|||++++.++.+++.|++. +..+..+||+|+..+|.+++++|.+|+.+|||||+++++|+|+|++++||+.+.
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a 739 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERA 739 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecC
Confidence 578999999999999999999985 678999999999999999999999999999999999999999999999998877
Q ss_pred C-CChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 356 P-TQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 356 ~-~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
+ .+..++.|++||+||.|+.|.|++++++.
T Consensus 740 ~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 740 DKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 5 46789999999999999999999998653
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.2e-41 Score=331.18 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=236.6
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 51 LRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 51 ~~~l~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
.......+|. |++.|+++++.+..+ .+.++++|||||||.+++++++..+..+ .+++|++||++|+.|++
T Consensus 252 ~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g---~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 252 KKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG---YQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEeccHHHHHHHH
Confidence 3344557886 999999999999886 3789999999999999999998877643 58999999999999999
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHHH----HhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHH
Q 015158 125 KVMRALGDYLGVKVHACVGGTSVREDQR----ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKD 200 (412)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 200 (412)
+.++++....++++..++|+.+...... ...+.++|+|+|+..+.. ...+.+++++|+||+|++...
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~---- 398 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE---- 398 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH----
Confidence 9999998888899999999987544332 334568999999877643 334578999999999986322
Q ss_pred HHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCc
Q 015158 201 QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQ 280 (412)
Q Consensus 201 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k 280 (412)
....+.......++++|||||.+....... ++................+...+............+.+.+ ....+
T Consensus 399 -qr~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q 473 (681)
T PRK10917 399 -QRLALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQ 473 (681)
T ss_pred -HHHHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCc
Confidence 222333344567899999999775544332 2322211111111112223333332222111122222222 24468
Q ss_pred EEEEEcch--------hHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEE
Q 015158 281 SVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 350 (412)
Q Consensus 281 ~lif~~~~--------~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~v 350 (412)
++|||+.+ ..++.+++.|.+. +..+..+||+|+..+|..++++|++|+.+|||||+++++|+|+|++++|
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~V 553 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVM 553 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEE
Confidence 99999954 3456777777765 4689999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-ChhhHHHhhhhcccCCCCceEEEEecc
Q 015158 351 INYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 384 (412)
Q Consensus 351 i~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 384 (412)
|+++.|. +...+.|++||+||.|..|.|++++..
T Consensus 554 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 554 VIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred EEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 9998875 678999999999999999999999953
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-41 Score=343.47 Aligned_cols=318 Identities=18% Similarity=0.226 Sum_probs=249.4
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 49 NLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 49 ~~~~~l~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
...+....++|. |++.|.++++.+..+ .+.+++++||+|||.+++.+++..+.. +.+++|++||++|+.|
T Consensus 589 ~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 589 QYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHH
Confidence 344555678885 999999999999986 789999999999999998877766543 3589999999999999
Q ss_pred HHHHHHHhhcccCcEEEEEEcCcchHHHHHHh----cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 123 IEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
+++.+.+.....++.+..+++..+.......+ .+..+|+|+||+.+. ....+.+++++|+||+|++ ++
T Consensus 665 ~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrf---G~ 736 (1147)
T PRK10689 665 HYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRF---GV 736 (1147)
T ss_pred HHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhc---ch
Confidence 99999987666678888888877765554432 356899999997542 2345578999999999996 22
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCC
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAI 278 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 278 (412)
.....+..++.+.+++++||||.+....+....+.++..+...... ...+............+...+.++. ..
T Consensus 737 --~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~ 809 (1147)
T PRK10689 737 --RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RG 809 (1147)
T ss_pred --hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cC
Confidence 2234456677899999999999887777666666677666543332 2234444443332222222233332 34
Q ss_pred CcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 355 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 355 (412)
++++|||++++.++.+++.|++. +..+..+||+|+..+|.+++.+|.+|+++|||||+++++|+|+|++++||+...
T Consensus 810 gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad 889 (1147)
T PRK10689 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 (1147)
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCC
Confidence 78999999999999999999887 678999999999999999999999999999999999999999999999996543
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
.++..+|.|++||+||.|+.|.|++++.+.
T Consensus 890 ~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 356788999999999999999999988653
No 50
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2e-41 Score=299.63 Aligned_cols=323 Identities=21% Similarity=0.238 Sum_probs=247.1
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
+..++|.||.......+.+ |++|+.|||-|||.++++.+...+.... + ++|+++||+.|+.|+++.+.+........
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG-G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC-C-eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3446999999999888876 8999999999999999999988887643 3 89999999999999999999988777778
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 217 (412)
+..++|...+......... ..|+++||+.+.+-+..+.++...+.++|+||||+......+..+.+.......++.+++
T Consensus 89 i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEE
Confidence 8999998887766555544 489999999999999999999999999999999997755444555554555556888999
Q ss_pred EeecCChHHHHH---HHHhcCCCeEEEecCCccccCCc---eEEE-----------------------------------
Q 015158 218 FSATMPPEALEI---TRKFMNKPVRILVKRDELTLEGI---KQFH----------------------------------- 256 (412)
Q Consensus 218 ~SAT~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------- 256 (412)
+||||+.+.... +..+.-..+.+....+.-..+.+ +..+
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 999997443221 11111111111111000000000 0000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 257 -------------------------------------------------------------------------------- 256 (412)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (412)
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence
Q ss_pred -------------EEeccchhhHHHHHHHH----HhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeE--Ee-------cC
Q 015158 257 -------------VNVEKEEWKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS--AT-------HG 310 (412)
Q Consensus 257 -------------~~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~--~~-------~~ 310 (412)
......+.++..+.+++ ++....++|||++.+..++.+.+.|.+.+..+. ++ ..
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~ 407 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDK 407 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeecccccccc
Confidence 00000122344444443 334556899999999999999999999887764 22 24
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 311 ~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
+|++.++.+++++|++|+++|||+|++.++|+|+|.++.||++++..|+..++||.||+||. ..|.++++++.+
T Consensus 408 GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 408 GMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 69999999999999999999999999999999999999999999999999999999999999 789999999887
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.6e-40 Score=323.20 Aligned_cols=315 Identities=21% Similarity=0.293 Sum_probs=234.3
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 50 LLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 50 ~~~~l~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
+...+...+|. |++.|+++++.+..+ .+.++++|||||||.+++++++..+..+ .+++|++||++|+.|+
T Consensus 225 ~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g---~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG---YQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEECCHHHHHHHH
Confidence 44566677885 999999999999876 3579999999999999999998887654 5899999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcH
Q 015158 124 EKVMRALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFK 199 (412)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 199 (412)
++.+.++....++.+..++|+....... ....++++|+|+|+..+.. ...+.++++||+||+|++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~--- 372 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE--- 372 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH---
Confidence 9999999887889999999988765432 2334568999999987753 344678999999999985322
Q ss_pred HHHHHHHHhCC--CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh--
Q 015158 200 DQIYDIFQLLP--PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-- 275 (412)
Q Consensus 200 ~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 275 (412)
+...+..... ...++++|||||.+...... .++................+....... ... ..+...+..
T Consensus 373 -qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~~~---~~~-~~~~~~i~~~l 445 (630)
T TIGR00643 373 -QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLIKH---DEK-DIVYEFIEEEI 445 (630)
T ss_pred -HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEeCc---chH-HHHHHHHHHHH
Confidence 1222223222 26789999999876543332 222211111111111112222222211 112 233333332
Q ss_pred cCCCcEEEEEcch--------hHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 276 LAITQSVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 276 ~~~~k~lif~~~~--------~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
....+++|||+.. ..++.+++.|.+. +..+..+||+|+..+|..++++|++|+.+|||||+++++|+|+|
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP 525 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVP 525 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccC
Confidence 2446899999875 4566777777753 67899999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCC-ChhhHHHhhhhcccCCCCceEEEEec
Q 015158 346 QVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 383 (412)
Q Consensus 346 ~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~ 383 (412)
++++||+++.+. +...+.|++||+||.|..|.|++++.
T Consensus 526 ~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 526 NATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred CCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 999999998875 68899999999999999999999993
No 52
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=303.79 Aligned_cols=340 Identities=20% Similarity=0.238 Sum_probs=270.5
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
-+.+.+++++.+.+-|+..|+.++.|.|..++.. +++|.|.+|+.+|+||||++.-++-+..+.. .+++.|+++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEEehhH
Confidence 4677889999999999999999999999999998 8899999999999999999998877776654 246899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+|++|.+++|+.-+...++.+..-.|........ ......+||||+||+-+..++... -.+.+++.||+||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999998888899888888776655442 223456899999999998888765 56789999999999988
Q ss_pred hccCcHHHHHHHH---HhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHH
Q 015158 194 LSRGFKDQIYDIF---QLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLC 270 (412)
Q Consensus 194 ~~~~~~~~~~~i~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 270 (412)
.+...+..+..++ ..+-+..|+|++|||..++ .+....+.-+.+.+... +..+............+.+.+.
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~R-----PVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDER-----PVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCC-----CCChhHeeeeecCchHHHHHHH
Confidence 7755444443333 3334589999999999754 45566555554433322 2234444555555566777766
Q ss_pred HHHHhc--------CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCC
Q 015158 271 DLYETL--------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342 (412)
Q Consensus 271 ~~~~~~--------~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~ 342 (412)
.+.+.- -.+.+|||++|+..|..+++.|..+|++...||++++-.+|..+...|.++++.++|+|.+++.|+
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGV 504 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGV 504 (830)
T ss_pred HHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCC
Confidence 665432 237899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEE---Ecc-CCCChhhHHHhhhhcccCC--CCceEEEEeccCcH
Q 015158 343 DVQQVSLVI---NYD-LPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDE 387 (412)
Q Consensus 343 d~~~~~~vi---~~~-~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~ 387 (412)
|+|.-.+++ -++ -..|+.+|.||.||+||.+ ..|++|++..+...
T Consensus 505 DFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~ 555 (830)
T COG1202 505 DFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKK 555 (830)
T ss_pred CCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChh
Confidence 999544432 122 2458999999999999974 56899998877543
No 53
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.1e-39 Score=314.18 Aligned_cols=315 Identities=21% Similarity=0.249 Sum_probs=233.9
Q ss_pred CCCCCChHHHHhhhhhhhcCc-cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc-
Q 015158 57 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL- 134 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 134 (412)
.||. |+|+|.++++.++.|+ +.++.+|||||||.++..+++..........+.++++|+++|+.|.++.+.++....
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4888 9999999999999998 577789999999986654444222212122356668899999999999999887643
Q ss_pred ----------------------CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc---------CCC---CCC
Q 015158 135 ----------------------GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR---------QSL---RPD 180 (412)
Q Consensus 135 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~---------~~~---~~~ 180 (412)
++.+..++|+.....+......+++|+|+|++.+.+-... +.+ .+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 4788899999988888887888899999997655332110 001 146
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhC--CC---CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEE
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLL--PP---KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 255 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (412)
++.++|+|||| .+.+|...+..+...+ ++ +.|+++||||++.+.......+..++..+...........+.+.
T Consensus 171 ~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~ 248 (844)
T TIGR02621 171 QDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL 248 (844)
T ss_pred cceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE
Confidence 78999999999 5778999999999864 33 26899999999887766666666666655554444444444443
Q ss_pred EEEeccchhhHHHHH----HHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHH-----HHHHHHhc
Q 015158 256 HVNVEKEEWKLETLC----DLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD-----IIMREFRS 326 (412)
Q Consensus 256 ~~~~~~~~~~~~~l~----~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~ 326 (412)
+.... ..+...+. .++. ...+++|||||+++.++.+++.|++.+. ..+||++++.+|. .++++|++
T Consensus 249 -v~v~~-e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~ 323 (844)
T TIGR02621 249 -VPPSD-EKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLP 323 (844)
T ss_pred -EecCh-HHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhc
Confidence 22222 22322222 2222 3457899999999999999999998876 8999999999999 78899987
Q ss_pred ----CC-------CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCc-eEEEEe
Q 015158 327 ----GS-------SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG-VAINFV 382 (412)
Q Consensus 327 ----g~-------~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g-~~~~~~ 382 (412)
|+ ..|||+|+++++|+|++. ++||....| ...|+||+||+||.|..+ ..+.++
T Consensus 324 ~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 324 QMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 43 679999999999999986 777765544 689999999999998754 334444
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.4e-40 Score=333.31 Aligned_cols=321 Identities=20% Similarity=0.290 Sum_probs=231.3
Q ss_pred EECCCCCCchhHhHHHHHHhhccC----------CCceeEEEEcCCHHHHHHHHHHHHHhh------------cccCcEE
Q 015158 81 QQAQSGTGKTATFCSGILQQLDYG----------LVECQALVLAPTRELAQQIEKVMRALG------------DYLGVKV 138 (412)
Q Consensus 81 v~~~tGsGKT~~~~~~~~~~~~~~----------~~~~~~lil~P~~~L~~q~~~~~~~~~------------~~~~~~~ 138 (412)
|++|||||||++|+++++..+... ..+.++|||+|+++|+.|+.+.++... ...++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999998887532 134689999999999999999886521 1236889
Q ss_pred EEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCCchhhccC----cHHHHHHHHHhCCCCc
Q 015158 139 HACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEADEMLSRG----FKDQIYDIFQLLPPKI 213 (412)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~----~~~~~~~i~~~~~~~~ 213 (412)
...+|+.+.....+...++++|+|+||++|..++.+. ...++++++||+||+|.+.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999887776677778899999999998876543 2357889999999999998654 3345666767777789
Q ss_pred eEEEEeecCChHHHHHHHHhcCC-CeEEEecCCccccCCceEEEEEeccch-------------------hhH-HHHHHH
Q 015158 214 QVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFHVNVEKEE-------------------WKL-ETLCDL 272 (412)
Q Consensus 214 ~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~-~~l~~~ 272 (412)
|+|++|||+.+. .+....+.+. +..+.. ........+... ....... ... .....+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999763 4444444332 444432 222222222211 1111100 000 111122
Q ss_pred HHh-cCCCcEEEEEcchhHHHHHHHHHhcCC---------------------------------CeeEEecCCCCHHHHH
Q 015158 273 YET-LAITQSVIFVNTRRKVDWLTDKMRSRD---------------------------------HTVSATHGDMDQNTRD 318 (412)
Q Consensus 273 ~~~-~~~~k~lif~~~~~~~~~~~~~L~~~~---------------------------------~~~~~~~~~~~~~~r~ 318 (412)
+.. ....++||||||++.|+.++..|++.. ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 222 234789999999999999999997641 1256899999999999
Q ss_pred HHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC-CCCceEEEEeccCcHHHH---HHHH
Q 015158 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-GRKGVAINFVTRDDERML---FDIQ 394 (412)
Q Consensus 319 ~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~~~~~~~~~---~~~~ 394 (412)
.+++.|++|++++||||++++.|||++.+++||+++.|.|..+|+||+||+||. |..+.++++... ..+.+ ..++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~-r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT-RRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc-HHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 333445533332 22222 2366
Q ss_pred HHhccccccCC
Q 015158 395 KFYNVVIEELP 405 (412)
Q Consensus 395 ~~~~~~~~~~~ 405 (412)
.+++..++++.
T Consensus 397 ~~l~g~iE~~~ 407 (1490)
T PRK09751 397 CMFAGRLENLT 407 (1490)
T ss_pred HHhcCCCCccC
Confidence 67776666544
No 55
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=9e-40 Score=310.38 Aligned_cols=306 Identities=15% Similarity=0.132 Sum_probs=218.7
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEE
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 139 (412)
..|+++|.+++..++.++++++++|||+|||.++...+...+.. ...++||++|+++|+.||.+.+.++.......+.
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~ 190 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMH 190 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccccccee
Confidence 46999999999999999999999999999998765433222222 2338999999999999999999998654344444
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
.+.++.... .+.+|+|+|++++.+... ..++++++||+||||++.... +..++..+++..+++++|
T Consensus 191 ~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~lGLT 256 (501)
T PHA02558 191 KIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFKFGLT 256 (501)
T ss_pred EEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceEEEEe
Confidence 555544321 346899999999875432 134689999999999986543 456666666677899999
Q ss_pred ecCChHHHHH--HHHhcCCCeEEEecCCcc------ccCCceEEEEE--------------------eccchhhHHHHHH
Q 015158 220 ATMPPEALEI--TRKFMNKPVRILVKRDEL------TLEGIKQFHVN--------------------VEKEEWKLETLCD 271 (412)
Q Consensus 220 AT~~~~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~--------------------~~~~~~~~~~l~~ 271 (412)
|||....... +..+++. +.......+. ....+...... ......+...+..
T Consensus 257 ATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~ 335 (501)
T PHA02558 257 GSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIAN 335 (501)
T ss_pred ccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHH
Confidence 9996432211 1222332 1111111000 00000000000 0011122233333
Q ss_pred HHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CCCcCCCCCCCCC
Q 015158 272 LYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 348 (412)
Q Consensus 272 ~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~~~~G~d~~~~~ 348 (412)
++... .+.+++|||.+.++++.+++.|++.+.++..+||+++..+|..+++.|++|+..+||+| +.+++|+|+|+++
T Consensus 336 ~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld 415 (501)
T PHA02558 336 LALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLH 415 (501)
T ss_pred HHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccccccc
Confidence 33322 34689999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEe
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 382 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 382 (412)
+||++.++.|...|+|++||++|.+..+...+++
T Consensus 416 ~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 416 HVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred EEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999997665433333
No 56
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=316.14 Aligned_cols=331 Identities=23% Similarity=0.299 Sum_probs=248.4
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 45 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 45 ~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
.+++.+...++..++.++++.|+.++..... ++|++|++|||||||++++++++..+..+ +.+++|+||+++|+++.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 4678888888888998999999999988665 49999999999999999999999998864 45899999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHH
Q 015158 124 EKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
+++++.+ ...|+++...+|+...... ....++|+|+|||+|....++.......+++||+||+|.+.+...+..+.
T Consensus 93 ~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 9999933 4569999999998874442 33567999999999999988877677889999999999988775566666
Q ss_pred HHHHhCC---CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCc-eEEEEEec--c----chhhHHHHHHHH
Q 015158 204 DIFQLLP---PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI-KQFHVNVE--K----EEWKLETLCDLY 273 (412)
Q Consensus 204 ~i~~~~~---~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~----~~~~~~~l~~~~ 273 (412)
.+....+ ...+++++|||+++ ..+...++..++............+.. ...+.... . .......+...+
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHH
Confidence 6655443 34799999999975 345555444444421222222211111 11111111 1 011222333333
Q ss_pred Hhc-CCCcEEEEEcchhHHHHHHHHHhcC-------------------------------------CCeeEEecCCCCHH
Q 015158 274 ETL-AITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQN 315 (412)
Q Consensus 274 ~~~-~~~k~lif~~~~~~~~~~~~~L~~~-------------------------------------~~~~~~~~~~~~~~ 315 (412)
... .++.+||||+|+..+...++.+... ...+.++|++++.+
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~ 327 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPRE 327 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHH
Confidence 333 4479999999999999998888731 12478999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEE----Ecc-----CCCChhhHHHhhhhcccCCC--CceEEEEe
Q 015158 316 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPTQPENYLHRIGRSGRFGR--KGVAINFV 382 (412)
Q Consensus 316 ~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 382 (412)
+|..+.+.|+.|+++||+||+++..|+|+|.-+++| .++ .+.+.-++.||+||+||.|- .|.++++.
T Consensus 328 ~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 328 DRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred HHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 999999999999999999999999999999555554 233 34568899999999999874 46677666
No 57
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-38 Score=301.09 Aligned_cols=317 Identities=14% Similarity=0.127 Sum_probs=225.1
Q ss_pred CCChHHHHhhhhhhhcC---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 60 EKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
..|||||++|+..+..+ +++++++|||+|||++++.++... ..++||+||+..|++||.+++.++......
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 35999999999998753 478999999999999987665532 236999999999999999999998655556
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc--------CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHh
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR--------QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQL 208 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~ 208 (412)
.+..++|+.... ......|+|+|++++.+...+ ..+....|++||+||||++... .+..+...
T Consensus 328 ~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~ 398 (732)
T TIGR00603 328 QICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTI 398 (732)
T ss_pred eEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHh
Confidence 677777754321 123468999999988643221 1233357899999999997543 34445555
Q ss_pred CCCCceEEEEeecCChHH--HHHHHHhcCCCeEEEecC------CccccCCceEEEEEecc-------------------
Q 015158 209 LPPKIQVGVFSATMPPEA--LEITRKFMNKPVRILVKR------DELTLEGIKQFHVNVEK------------------- 261 (412)
Q Consensus 209 ~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~------------------- 261 (412)
+. ....+++||||..+. ...+..+++... +.... ....+......++.+..
T Consensus 399 l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~v-ye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~ 476 (732)
T TIGR00603 399 VQ-AHCKLGLTATLVREDDKITDLNFLIGPKL-YEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYV 476 (732)
T ss_pred cC-cCcEEEEeecCcccCCchhhhhhhcCCee-eecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhh
Confidence 54 334799999996432 122333444332 22211 11111111122222211
Q ss_pred -chhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCC
Q 015158 262 -EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDL 337 (412)
Q Consensus 262 -~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~ 337 (412)
...+...+..+++.+ ..+++||||.+...++.+++.|. +..+||+++..+|.+++++|++| .+++||+|++
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 123445555566655 56899999999999999998883 46689999999999999999875 7899999999
Q ss_pred CcCCCCCCCCCEEEEccCC-CChhhHHHhhhhcccCCCCceE-------EEEeccCcHH--HHHHHHHHhc
Q 015158 338 LARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGVA-------INFVTRDDER--MLFDIQKFYN 398 (412)
Q Consensus 338 ~~~G~d~~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~g~~g~~-------~~~~~~~~~~--~~~~~~~~~~ 398 (412)
+.+|+|+|.+++||+++.| .|..+|+||+||++|.++.|.+ |.+++.+..+ ...+-++|+.
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 9999999999999999887 4999999999999999776654 7777776444 3345555554
No 58
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.5e-38 Score=299.39 Aligned_cols=316 Identities=18% Similarity=0.207 Sum_probs=227.5
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhH---------HHHHHhhc---cCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC---------SGILQQLD---YGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~---------~~~~~~~~---~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
-..|.++++.+.++++++++|+||||||.+.. ++.+..+. ......++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999998732 22233221 1223458999999999999999988775
Q ss_pred hcc---cCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHH
Q 015158 131 GDY---LGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ 207 (412)
Q Consensus 131 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~ 207 (412)
... .+..+....|+... ..........+|+++|+.... ..++++++||+||||+....+ ..+..++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch--hHHHHHHH
Confidence 432 35677888888762 211222235689999965211 135689999999999976654 44444444
Q ss_pred hC-CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEecc---------chhhHHHHHHHHHh--
Q 015158 208 LL-PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK---------EEWKLETLCDLYET-- 275 (412)
Q Consensus 208 ~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~-- 275 (412)
.. +...++++||||++.+.... ..+++.+..+..... ....+.+.+..... ...+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 33 23348999999998776554 677877777766432 22445555543221 01111222222222
Q ss_pred cCCCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHH-hcCCCcEEEEcCCCcCCCCCCCCCEEEE
Q 015158 276 LAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVIN 352 (412)
Q Consensus 276 ~~~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vlv~t~~~~~G~d~~~~~~vi~ 352 (412)
...+++|||++++++++.+++.|++. +..+..+||++++. ++.+++| ++|+.+|||+|+++++|+|+|++++||+
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID 470 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYD 470 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEE
Confidence 23468999999999999999999987 68999999999874 4666776 6899999999999999999999999999
Q ss_pred cc---CCC---------ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 353 YD---LPT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 353 ~~---~~~---------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
++ .|. |.+.+.||+||+||. .+|.|+.++++.+...+.++.
T Consensus 471 ~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri~ 523 (675)
T PHA02653 471 TGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRID 523 (675)
T ss_pred CCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHHh
Confidence 98 443 788999999999999 789999999987765444443
No 59
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.3e-37 Score=302.59 Aligned_cols=308 Identities=16% Similarity=0.267 Sum_probs=234.5
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 141 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~ 141 (412)
+.+-.+.+..+..++++++.++||||||+++.++++.... .+++++++.|++.++.|.++.+.+ +....+..+...
T Consensus 4 ~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 4 HAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred hHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 3444566777778899999999999999999999987753 235899999999999999998864 434445556555
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch-hhccCcHHH-HHHHHHhCCCCceEEEEe
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE-MLSRGFKDQ-IYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~S 219 (412)
..... ......+|+|+|++.|.+.+.. ...+.++++||+||+|+ ..+.++... +..+...++++.++++||
T Consensus 81 vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmS 153 (819)
T TIGR01970 81 VRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMS 153 (819)
T ss_pred Ecccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEe
Confidence 44332 1234568999999999998876 34678999999999996 555554433 345566677889999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhh----HHHHHHHHHhcCCCcEEEEEcchhHHHHHH
Q 015158 220 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWK----LETLCDLYETLAITQSVIFVNTRRKVDWLT 295 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~k~lif~~~~~~~~~~~ 295 (412)
||++... +..++++...+...... ..+...+......... ...+..++.. ..+++|||+++.++++.++
T Consensus 154 ATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 154 ATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred CCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHH
Confidence 9998643 45566554444433221 1244444444332221 1233334433 3578999999999999999
Q ss_pred HHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC---------------
Q 015158 296 DKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--------------- 357 (412)
Q Consensus 296 ~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~--------------- 357 (412)
+.|++ .++.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||+++.+.
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 478899999999999999999999999999999999999999999999999998764
Q ss_pred ---ChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 358 ---QPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 358 ---s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|.+++.||.||+||. .+|.||.++++.+..
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 345689999999999 799999999987654
No 60
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=304.55 Aligned_cols=348 Identities=22% Similarity=0.317 Sum_probs=271.6
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHH
Q 015158 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKV 126 (412)
Q Consensus 47 ~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 126 (412)
...+...+...++..|++||.+|+..+.+|++++|..|||||||.+|++++++.+...... ++|++.|+++|++++.+.
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~r 134 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAER 134 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHH
Confidence 3445777888888889999999999999999999999999999999999999998876433 799999999999999999
Q ss_pred HHHhhcccC--cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC----CCCCCCceEEEEeCCchhhccCcHH
Q 015158 127 MRALGDYLG--VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ----SLRPDNIRIFVLDEADEMLSRGFKD 200 (412)
Q Consensus 127 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~----~~~~~~~~~iiiDE~h~~~~~~~~~ 200 (412)
++++....+ +....++|+...........++++|++|+|++|...+.+. .+..+++++||+||+|-+-. .++.
T Consensus 135 l~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS 213 (851)
T COG1205 135 LRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGS 213 (851)
T ss_pred HHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchh
Confidence 999887776 7888999999887777888899999999999998755443 23356799999999996532 2332
Q ss_pred -------HHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccc--------hhh
Q 015158 201 -------QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKE--------EWK 265 (412)
Q Consensus 201 -------~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 265 (412)
.+..++...+.+.++|+.|||..+. .+....+++...... ..+...+.....+....+.. ...
T Consensus 214 ~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 3333334445688999999999654 567777777766654 33333444445555444411 122
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcchhHHHHHH----HHHhcCC----CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc
Q 015158 266 LETLCDLYETL--AITQSVIFVNTRRKVDWLT----DKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 335 (412)
Q Consensus 266 ~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~----~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t 335 (412)
...+..++... ..-++|+|+.+++.++.+. ..+...+ ..+..+++++...+|..++..|++|++.++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 33333333332 3468999999999999886 4444445 578899999999999999999999999999999
Q ss_pred CCCcCCCCCCCCCEEEEccCCC-ChhhHHHhhhhcccCCCCceEEEEecc--CcHHHHHHHHHHhc
Q 015158 336 DLLARGIDVQQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTR--DDERMLFDIQKFYN 398 (412)
Q Consensus 336 ~~~~~G~d~~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~--~~~~~~~~~~~~~~ 398 (412)
++++.|+|+..++.||..+.|. +..++.|+.||+||.++.+..+++... .+..+....+.++.
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 9999999999999999999999 999999999999999977776666653 25555555555555
No 61
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=9.3e-37 Score=309.43 Aligned_cols=284 Identities=22% Similarity=0.279 Sum_probs=217.4
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+ +|+++|+.+++.++.|+++++++|||+|||..++. ++..+.. .+.+++|++||++|+.|+.+.+..++...+.
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~-~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLV-MSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 367 59999999999999999999999999999975443 3333322 3568999999999999999999999887788
Q ss_pred EEEEEEcCcch-----HHHHHH-hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-----------cCcH
Q 015158 137 KVHACVGGTSV-----REDQRI-LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-----------RGFK 199 (412)
Q Consensus 137 ~~~~~~~~~~~-----~~~~~~-~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-----------~~~~ 199 (412)
.+..+.++... ...... ..+.++|+|+||+.+.+.+. .+....++++|+||||++++ .+|.
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 87777766432 112222 33568999999999998776 34456799999999999885 3453
Q ss_pred -HHHHHHHHhCCC------------------------CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceE
Q 015158 200 -DQIYDIFQLLPP------------------------KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 254 (412)
Q Consensus 200 -~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (412)
..+..++..++. ..+.+++|||.++..... .++.....+..........++.+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecCcccccCCceE
Confidence 456666665543 678999999997632211 23334444444444445566777
Q ss_pred EEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhH---HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015158 255 FHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331 (412)
Q Consensus 255 ~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 331 (412)
.+.... .+...+.++++... .++||||++.+. ++.+++.|++.|+.+..+||++ .+.+++|++|+.+|
T Consensus 309 ~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~V 379 (1176)
T PRK09401 309 SYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVDV 379 (1176)
T ss_pred EEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCCE
Confidence 776554 45667777776654 589999999777 9999999999999999999998 23459999999999
Q ss_pred EEE----cCCCcCCCCCCC-CCEEEEccCCC
Q 015158 332 LIT----TDLLARGIDVQQ-VSLVINYDLPT 357 (412)
Q Consensus 332 lv~----t~~~~~G~d~~~-~~~vi~~~~~~ 357 (412)
||+ |+.+++|+|+|+ +++||+++.|.
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 999 689999999999 89999988875
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.9e-37 Score=300.70 Aligned_cols=308 Identities=17% Similarity=0.283 Sum_probs=234.7
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHAC 141 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~ 141 (412)
+.+-.+.+..+.+++++++.++||||||+++.++++..... .+++++++|++.++.|.++.+.+ +....+..+...
T Consensus 7 ~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 7 AAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 44555677778888999999999999999999888875432 24899999999999999998864 444456677766
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh-hccCcH-HHHHHHHHhCCCCceEEEEe
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM-LSRGFK-DQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~S 219 (412)
.++... .....+|+|+|++.|.+.+.. ...+.++++||+||+|+. .+.++. ..+..+...++++.++++||
T Consensus 84 vr~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 655432 123458999999999998875 346789999999999973 333322 23345566677889999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhH----HHHHHHHHhcCCCcEEEEEcchhHHHHHH
Q 015158 220 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLT 295 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~k~lif~~~~~~~~~~~ 295 (412)
||++.+ .+..+++....+...... ..+...+.......... ..+..++.. ..+.+|||+++.++++.++
T Consensus 157 ATl~~~---~l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 157 ATLDND---RLQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred cCCCHH---HHHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 999864 245566655444433221 22455554443322221 133344433 3588999999999999999
Q ss_pred HHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC---------------
Q 015158 296 DKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--------------- 357 (412)
Q Consensus 296 ~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~--------------- 357 (412)
+.|++ .++.+..+||+++..+|.++++.|.+|+.+|||||+++++|+|+|++++||+.+.+.
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 309 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVT 309 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEE
Confidence 99987 577899999999999999999999999999999999999999999999999988763
Q ss_pred ---ChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 358 ---QPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 358 ---s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|.+++.||.||+||. .+|.||.++++.+..
T Consensus 310 ~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 310 QRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred EeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 446899999999999 699999999987664
No 63
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=5.7e-36 Score=301.20 Aligned_cols=322 Identities=21% Similarity=0.258 Sum_probs=237.4
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEE
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 139 (412)
-++++||.+++..++.+ ++++++|||+|||.++++.+...+. ..+.++||++|+++|+.|+.+.++.+....+..+.
T Consensus 14 ~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 14 IEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 35999999999988877 8999999999999999888877663 24568999999999999999999987654455788
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
.++|+......... ..+++|+|+||+.+.+.+....+...++++||+||||++........+............++++|
T Consensus 91 ~~~g~~~~~~r~~~-~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lT 169 (773)
T PRK13766 91 VFTGEVSPEKRAEL-WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLT 169 (773)
T ss_pred EEeCCCCHHHHHHH-HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEE
Confidence 88887765443333 34569999999999988877777788999999999999775433333434444444567799999
Q ss_pred ecCChHH---HHHHHHhcCCCeEEEecCCc-----cccCCceE-------------------------------------
Q 015158 220 ATMPPEA---LEITRKFMNKPVRILVKRDE-----LTLEGIKQ------------------------------------- 254 (412)
Q Consensus 220 AT~~~~~---~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~------------------------------------- 254 (412)
|||.... ...+..++...+.+...... .....+..
T Consensus 170 aTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~ 249 (773)
T PRK13766 170 ASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSIS 249 (773)
T ss_pred cCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCC
Confidence 9985332 11122211111100000000 00000000
Q ss_pred -----------------EE-------------------------------------------------------------
Q 015158 255 -----------------FH------------------------------------------------------------- 256 (412)
Q Consensus 255 -----------------~~------------------------------------------------------------- 256 (412)
..
T Consensus 250 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~ 329 (773)
T PRK13766 250 PDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVED 329 (773)
T ss_pred CCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhC
Confidence 00
Q ss_pred ----------EEeccchhhHHHHHHHHHh----cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCC--------CCH
Q 015158 257 ----------VNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD--------MDQ 314 (412)
Q Consensus 257 ----------~~~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~--------~~~ 314 (412)
..+.....+...+.++++. ...+++||||+++..++.+++.|...++.+..++|. ++.
T Consensus 330 ~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~ 409 (773)
T PRK13766 330 PRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQ 409 (773)
T ss_pred HHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCH
Confidence 0000112234444555544 456899999999999999999999989988888876 888
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 315 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 315 ~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
.+|..++++|++|+.++||+|+++++|+|+|.+++||++++++++..++||+||+||.|. |.+++++..+.
T Consensus 410 ~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 410 KEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred HHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999865 88888887653
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.3e-37 Score=284.84 Aligned_cols=302 Identities=16% Similarity=0.173 Sum_probs=204.7
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHH--------
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE-------- 149 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 149 (412)
++++.+|||||||.+++++++..+... ...+++|++|+++|+.|+.+.+..++. ..+..++++.....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccCCch
Confidence 478999999999999999999876543 456899999999999999999999753 23444444332110
Q ss_pred ----HHHHh------cCCCcEEEeChHHHHHHHHcCCC----C--CCCceEEEEeCCchhhccCcHHHHHHHHHhCC-CC
Q 015158 150 ----DQRIL------SSGVHVVVGTPGRVFDMLRRQSL----R--PDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-PK 212 (412)
Q Consensus 150 ----~~~~~------~~~~~iii~T~~~l~~~~~~~~~----~--~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~-~~ 212 (412)
..... ....+|+++||+++.+.+..... . .-..++||+||+|.+.+..+.. +..++..++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 00000 12357999999999877664210 0 1123789999999987654333 444444333 47
Q ss_pred ceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc-CCCcEEEEEcchhHH
Q 015158 213 IQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKV 291 (412)
Q Consensus 213 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~ 291 (412)
.+++++|||++....+..........................+.........+...+..+++.. ..+++||||++++.+
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~ 235 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRA 235 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHH
Confidence 8899999999865555544432221111111000000001111111222223445555555543 457999999999999
Q ss_pred HHHHHHHhcCCC--eeEEecCCCCHHHHHH----HHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHh
Q 015158 292 DWLTDKMRSRDH--TVSATHGDMDQNTRDI----IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 365 (412)
Q Consensus 292 ~~~~~~L~~~~~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 365 (412)
+.+++.|++.+. .+..+||++++.+|.+ +++.|++|+.++||||+++++|+|++ ++.+|....| ...|+||
T Consensus 236 ~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr 312 (358)
T TIGR01587 236 QEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQR 312 (358)
T ss_pred HHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHH
Confidence 999999988765 5999999999999876 48899999999999999999999996 7777776544 7899999
Q ss_pred hhhcccCCCC----ceEEEEeccCcH
Q 015158 366 IGRSGRFGRK----GVAINFVTRDDE 387 (412)
Q Consensus 366 ~GR~~R~g~~----g~~~~~~~~~~~ 387 (412)
+||+||.|+. |.++++....+.
T Consensus 313 ~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 313 LGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred hccccCCCCCCCCCCeEEEEeecCCC
Confidence 9999998753 367777766544
No 65
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.1e-37 Score=286.81 Aligned_cols=337 Identities=20% Similarity=0.268 Sum_probs=233.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEK 125 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 125 (412)
+.++....+.-...-.+|.||.+.+...+ |+|++|++|||+|||+++...+.+++... +..++++++|++-|+.|+..
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKGKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC-CcceEEEeeCCchHHHHHHH
Confidence 33444433332233459999999999999 99999999999999999999998888754 45789999999999999997
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC-CCceEEEEeCCchhhccC-cHHHHH
Q 015158 126 VMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP-DNIRIFVLDEADEMLSRG-FKDQIY 203 (412)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~-~~~~~iiiDE~h~~~~~~-~~~~~~ 203 (412)
.+..++.. ..+....|+..............+|+++||+.+.+.+.+..... +.|.++|+||||+..... |...+.
T Consensus 125 ~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr 202 (746)
T KOG0354|consen 125 CFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMR 202 (746)
T ss_pred HHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHH
Confidence 77776543 44555555533333222334456999999999999888766554 789999999999977544 455555
Q ss_pred HHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEE-------------------------------------------
Q 015158 204 DIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRI------------------------------------------- 240 (412)
Q Consensus 204 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~------------------------------------------- 240 (412)
.++..-....|++++||||+.+.........+-...+
T Consensus 203 ~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 203 EYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred HHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 6665555555999999999843322211110000000
Q ss_pred ----------EecC------------CccccC--------------------------Cce-------------------
Q 015158 241 ----------LVKR------------DELTLE--------------------------GIK------------------- 253 (412)
Q Consensus 241 ----------~~~~------------~~~~~~--------------------------~~~------------------- 253 (412)
.... .....+ .++
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 0000 000000 000
Q ss_pred ----------------------EEEEEeccchhhHHHHHHHHHh----cCCCcEEEEEcchhHHHHHHHHHhcC---CCe
Q 015158 254 ----------------------QFHVNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSR---DHT 304 (412)
Q Consensus 254 ----------------------~~~~~~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~~~~~L~~~---~~~ 304 (412)
+.....+....+...+.+++.. ....++|||+.+++.|..+.++|.+. ++.
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir 442 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIK 442 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccc
Confidence 0000000012233334443333 24468999999999999999999842 222
Q ss_pred eEEe--------cCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCc
Q 015158 305 VSAT--------HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 376 (412)
Q Consensus 305 ~~~~--------~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 376 (412)
...+ ..+|++.++.++++.|++|+++|||||+++++|+|++.|+.||.++...|+..++||.|| ||+ +.|
T Consensus 443 ~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns 520 (746)
T KOG0354|consen 443 AEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNS 520 (746)
T ss_pred cceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCC
Confidence 2222 236899999999999999999999999999999999999999999999999999999999 998 678
Q ss_pred eEEEEeccCcHH
Q 015158 377 VAINFVTRDDER 388 (412)
Q Consensus 377 ~~~~~~~~~~~~ 388 (412)
.++++.+.....
T Consensus 521 ~~vll~t~~~~~ 532 (746)
T KOG0354|consen 521 KCVLLTTGSEVI 532 (746)
T ss_pred eEEEEEcchhHH
Confidence 898888854433
No 66
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=253.68 Aligned_cols=334 Identities=41% Similarity=0.700 Sum_probs=290.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
..|.++-+.+++.+++...||..|...|.+.++...-|-++++++..|.|||.++.++.++.+........++++|.|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 46778889999999999999999999999999999999999999999999999999999998877666678999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-c
Q 015158 119 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-R 196 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~ 196 (412)
|+-|+.+++..++... +.++..+.|+..++.+...+.+.++|+++||+++..+.++..++++++...|+|||+.++. -
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999988887665 6899999999999988888888899999999999999999999999999999999998764 4
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc-cccCCceEEEEEeccchhhHHHHHHHHHh
Q 015158 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFHVNVEKEEWKLETLCDLYET 275 (412)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (412)
+.++.+.++.+.-|...|++.+|||++.+..-.+..++.+|..+....+. ....+..+.+..+.. ..+...+.+++..
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke-~eKNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKE-NEKNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhh-hhhhhhhhhhhhh
Confidence 56788999999999999999999999999999999999998887776543 445666666666554 4567777777777
Q ss_pred cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 276 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 276 ~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
..-..++||+.|..... | ..+ +|+|+.+++|+|+.+++.++.++.
T Consensus 281 LeFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdm 325 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDM 325 (387)
T ss_pred hhhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCcccceeeeccCC
Confidence 77788999999876510 2 122 889999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEecc-CcHHHHHHHHHHhccccccCChhh
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
|.+...|.+|.||+||.|..|.++.|++. .+.+.+..+++-+...+.++|+.+
T Consensus 326 p~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 326 PEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred CCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 99999999999999999999999999866 577888888888888888888753
No 67
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-36 Score=296.44 Aligned_cols=331 Identities=18% Similarity=0.218 Sum_probs=258.6
Q ss_pred HHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 53 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 53 ~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
...-+|...+++-|.+++..++.|++.+|.+|||.||++||.++++-. ++-.+||.|..+|++++...+...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~~-- 327 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSKK-- 327 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhhc--
Confidence 334579999999999999999999999999999999999997777532 237999999999999888777543
Q ss_pred ccCcEEEEEEcCcchHHH----HHHhcC--CCcEEEeChHHHHHHH--HcCCCCCCC---ceEEEEeCCchhhccC--cH
Q 015158 133 YLGVKVHACVGGTSVRED----QRILSS--GVHVVVGTPGRVFDML--RRQSLRPDN---IRIFVLDEADEMLSRG--FK 199 (412)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~----~~~~~~--~~~iii~T~~~l~~~~--~~~~~~~~~---~~~iiiDE~h~~~~~~--~~ 199 (412)
++....+.++...... .....+ ..+|++.|||++...- ......+.. +.++|+||||++..|+ |+
T Consensus 328 --~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 328 --GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred --CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 7888888888776432 233334 5789999999985421 111122223 7899999999999887 55
Q ss_pred HHHHHH---HHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc
Q 015158 200 DQIYDI---FQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL 276 (412)
Q Consensus 200 ~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (412)
....++ ....+ ..+++++|||....+...+...++-.... .......+++....+..-.........+...-..+
T Consensus 406 p~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~ 483 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRH 483 (941)
T ss_pred HHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhcC
Confidence 544444 44444 47899999999888777777665533222 22333344444444433332222333444444455
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 356 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~ 356 (412)
..+.+||||.++..|+.+...|+..++....||++|++.+|..+.+.|..++++|+|+|=++++|+|-|+++.|||++.|
T Consensus 484 ~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lP 563 (941)
T KOG0351|consen 484 PDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLP 563 (941)
T ss_pred CCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHH
Q 015158 357 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 395 (412)
.|...|.|-+||+||.|.+..|++|+...|...++.+..
T Consensus 564 ks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 564 KSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred hhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 999999999999999999999999999998776665543
No 68
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-36 Score=262.62 Aligned_cols=329 Identities=19% Similarity=0.233 Sum_probs=243.4
Q ss_pred HHHHHHH-CCCCCC-hHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHH
Q 015158 50 LLRGIYA-YGFEKP-SAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKV 126 (412)
Q Consensus 50 ~~~~l~~-~~~~~l-~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 126 (412)
+...|+. +|+..+ ++.|+.|+..+.++ +++.|++|||+||++||.++.+.. ++..||+.|..+|..++.+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDH 80 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDH 80 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHH
Confidence 3445544 577654 88999999998876 799999999999999999888754 23799999999999999998
Q ss_pred HHHhhcccCcEEEEEEcCcchHHHHH------HhcCCCcEEEeChHHHHHHHH----cCCCCCCCceEEEEeCCchhhcc
Q 015158 127 MRALGDYLGVKVHACVGGTSVREDQR------ILSSGVHVVVGTPGRVFDMLR----RQSLRPDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iii~T~~~l~~~~~----~~~~~~~~~~~iiiDE~h~~~~~ 196 (412)
+..+ .+.+..+.+..+..+... .......+++.||++...... +...+.+.+.++++||+|+++.|
T Consensus 81 L~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQW 156 (641)
T KOG0352|consen 81 LKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQW 156 (641)
T ss_pred HHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhh
Confidence 8886 444444444433333222 223456899999987533221 22222345789999999999988
Q ss_pred C--cHHH---HHHHHHhCCCCceEEEEeecCChHHHHHHHHh--cCCCeEEEecCCccccCCceEEEEEeccch---hhH
Q 015158 197 G--FKDQ---IYDIFQLLPPKIQVGVFSATMPPEALEITRKF--MNKPVRILVKRDELTLEGIKQFHVNVEKEE---WKL 266 (412)
Q Consensus 197 ~--~~~~---~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 266 (412)
+ |+.. +-.+.+.+ +....+.+|||..+.+.+.+..- +.+|+.+...+... ...++.....+ +..
T Consensus 157 GHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-----~NLFYD~~~K~~I~D~~ 230 (641)
T KOG0352|consen 157 GHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-----DNLFYDNHMKSFITDCL 230 (641)
T ss_pred ccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh-----hhhhHHHHHHHHhhhHh
Confidence 7 4443 34444444 47789999999998887766543 34454333222111 11122111111 112
Q ss_pred HHHHHHHHhc-------------CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 015158 267 ETLCDLYETL-------------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333 (412)
Q Consensus 267 ~~l~~~~~~~-------------~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 333 (412)
..|.++-... ..+-.||||.+++++++++-.|...|+....||.++...+|..+.+.|.+++..||+
T Consensus 231 ~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~ 310 (641)
T KOG0352|consen 231 TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIA 310 (641)
T ss_pred HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEE
Confidence 2222222111 125689999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 334 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 334 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
+|..+++|+|-|+++.||+++.+.|++-|-|..||+||.|++..|-+++...|...++-+.
T Consensus 311 AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi 371 (641)
T KOG0352|consen 311 ATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLV 371 (641)
T ss_pred EEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887765443
No 69
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=8.9e-36 Score=308.41 Aligned_cols=324 Identities=19% Similarity=0.177 Sum_probs=243.2
Q ss_pred HHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 015158 49 NLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 49 ~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
++.+.++. .|| +|++.|+++++.++.|+++++.+|||+|||++++++++.... .+.+++|++||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 44455555 799 499999999999999999999999999999976555544322 3458999999999999999999
Q ss_pred HHhhccc--CcEEEEEEcCcchHHHHH----HhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc-----
Q 015158 128 RALGDYL--GVKVHACVGGTSVREDQR----ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR----- 196 (412)
Q Consensus 128 ~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~----- 196 (412)
..++... +..+..++|+........ ...+.++|+|+||+.+...+... . ..+++++|+||||+++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9987654 456677888877554422 23456899999999988766532 1 267899999999999763
Q ss_pred ------CcHHHHHH----HHH----------------------hCCCCce-EEEEeecCChHHHHHHHHhcCCCeEEEec
Q 015158 197 ------GFKDQIYD----IFQ----------------------LLPPKIQ-VGVFSATMPPEALEITRKFMNKPVRILVK 243 (412)
Q Consensus 197 ------~~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
+|...+.. ++. .++...+ .+..|||+++. .....++..+..+...
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEec
Confidence 56555543 221 2334444 57799999753 2223445566666666
Q ss_pred CCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhH---HHHHHHHHhcCCCeeEEecCCCCHHHHHHH
Q 015158 244 RDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDII 320 (412)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~ 320 (412)
.......++.+.+..... ..+ ..+.++++.. ...+||||++++. |+.+++.|++.|+.+..+||+ |...
T Consensus 299 ~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~ 370 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKG 370 (1638)
T ss_pred CCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHH
Confidence 655556667777665433 222 4677777765 4689999999875 589999999999999999985 8899
Q ss_pred HHHHhcCCCcEEEEcC----CCcCCCCCCC-CCEEEEccCCC---ChhhHHHhh-------------hhcccCCCCceEE
Q 015158 321 MREFRSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVAI 379 (412)
Q Consensus 321 ~~~f~~g~~~vlv~t~----~~~~G~d~~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~g~~g~~~ 379 (412)
+++|++|+.+|||+|. .+.+|+|+|+ +++||+++.|. |...+.|.. ||++|.|.++.++
T Consensus 371 l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~ 450 (1638)
T PRK14701 371 FDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGV 450 (1638)
T ss_pred HHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhH
Confidence 9999999999999994 7889999998 99999999998 776555554 9999999988887
Q ss_pred EEeccCcHH
Q 015158 380 NFVTRDDER 388 (412)
Q Consensus 380 ~~~~~~~~~ 388 (412)
..+...+..
T Consensus 451 ~~~~~~~~~ 459 (1638)
T PRK14701 451 LDVFPEDVE 459 (1638)
T ss_pred HHhHHHHHH
Confidence 444444433
No 70
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=253.34 Aligned_cols=351 Identities=18% Similarity=0.242 Sum_probs=267.9
Q ss_pred CCCCCCCCChhhhcccccc--CCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhh
Q 015158 25 SDGQDFFTSYDEVYDTFDA--MGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 101 (412)
Q Consensus 25 ~~~~~~~~~~~~~~~~f~~--~~l~~~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 101 (412)
.++......++.....|+. ++.+....+.|++ +....++|.|..+++..+.+.++++..|||.||++||.++++-.
T Consensus 55 dsdag~~~eyd~spaawdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a- 133 (695)
T KOG0353|consen 55 DSDAGASNEYDRSPAAWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA- 133 (695)
T ss_pred cccccccccccCCccccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-
Confidence 3444455556665556664 4566777777765 67778999999999999999999999999999999999888643
Q ss_pred ccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH------HhcCCCcEEEeChHHHHH-----
Q 015158 102 DYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR------ILSSGVHVVVGTPGRVFD----- 170 (412)
Q Consensus 102 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iii~T~~~l~~----- 170 (412)
.+.+|++||..+|++++.-+++.+ |+....+......+.... ....+..+++.||+++..
T Consensus 134 -----dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~m 204 (695)
T KOG0353|consen 134 -----DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFM 204 (695)
T ss_pred -----CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHH
Confidence 247999999999999999888887 666666665555433211 123456899999998753
Q ss_pred -HHHcCCCCCCCceEEEEeCCchhhccC--cHH---HHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecC
Q 015158 171 -MLRRQSLRPDNIRIFVLDEADEMLSRG--FKD---QIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 244 (412)
Q Consensus 171 -~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~---~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
.++ ..+....+.+|-+||+|+...|+ |+. .+.-+.+.+ ++.+++++|||...++....+..++-...+.+..
T Consensus 205 nkle-ka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~~~tf~a 282 (695)
T KOG0353|consen 205 NKLE-KALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEAAFTFRA 282 (695)
T ss_pred HHHH-HHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHhhheeec
Confidence 222 23345678999999999999887 433 333333444 5788999999999888887777665433332222
Q ss_pred CccccCCceEEEEEecc-chhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 015158 245 DELTLEGIKQFHVNVEK-EEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 322 (412)
Q Consensus 245 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 322 (412)
...+++...-+..-+. .++..+.+..+++.. .+...||||-|++.++.++..|+.+|+....+|..+.+.++.-..+
T Consensus 283 -~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 283 -GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred -ccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 2333444443333332 233445555555543 5567899999999999999999999999999999999999999999
Q ss_pred HHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHH--------------------------------------
Q 015158 323 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH-------------------------------------- 364 (412)
Q Consensus 323 ~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q-------------------------------------- 364 (412)
.|..|++.|+|+|-++++|+|-|+++.||+-++|.|...|-|
T Consensus 362 ~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffa 441 (695)
T KOG0353|consen 362 GWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFA 441 (695)
T ss_pred cccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeee
Confidence 999999999999999999999999999999999999999999
Q ss_pred -----hhhhcccCCCCceEEEEeccCcHH
Q 015158 365 -----RIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 365 -----~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
..||+||.+.+..|++++.-.|--
T Consensus 442 vfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 442 VFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred eecchhccccccCCCcccEEEEechHHHH
Confidence 679999999999999998765543
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.5e-34 Score=262.92 Aligned_cols=289 Identities=16% Similarity=0.229 Sum_probs=199.5
Q ss_pred HHHhhhhhhhcCcc--EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc----cCcEE
Q 015158 65 IQQRGIVPFCKGLD--VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDY----LGVKV 138 (412)
Q Consensus 65 ~Q~~a~~~~~~~~~--~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~ 138 (412)
||.++++.+.++.+ +++.+|||+|||.+++++++.. ..++++++|+++|++|+.+.+..+... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 69999999998864 7889999999999999888742 236899999999999999999887632 25566
Q ss_pred EEEEcCcchH--HH------------------HHHhcCCCcEEEeChHHHHHHHHcCCC--------CCCCceEEEEeCC
Q 015158 139 HACVGGTSVR--ED------------------QRILSSGVHVVVGTPGRVFDMLRRQSL--------RPDNIRIFVLDEA 190 (412)
Q Consensus 139 ~~~~~~~~~~--~~------------------~~~~~~~~~iii~T~~~l~~~~~~~~~--------~~~~~~~iiiDE~ 190 (412)
..++|..... .. .......+.|+++||+.|..++..... ...++++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666653221 00 011134678999999999766543211 1367899999999
Q ss_pred chhhccCc-----HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh--cCCCeEEEecC-----C------cc-----
Q 015158 191 DEMLSRGF-----KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF--MNKPVRILVKR-----D------EL----- 247 (412)
Q Consensus 191 h~~~~~~~-----~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----~------~~----- 247 (412)
|.+..+.. ......++.......+++++|||+++.....+... ++.+....... + ..
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 98764331 12333344433445789999999998877777765 34333221111 0 00
Q ss_pred --ccCCceEEEEEeccchhhHHHHHH-------HHHhcCCCcEEEEEcchhHHHHHHHHHhcCC--CeeEEecCCCCHHH
Q 015158 248 --TLEGIKQFHVNVEKEEWKLETLCD-------LYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNT 316 (412)
Q Consensus 248 --~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~ 316 (412)
..+.+...+.. ....+...+.. .++....+++||||++++.++.+++.|++.+ ..+..+||.+++.+
T Consensus 235 ~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~ 312 (357)
T TIGR03158 235 RPVLPPVELELIP--APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD 312 (357)
T ss_pred ceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHH
Confidence 00123333333 11222222222 2222345799999999999999999999864 57888999999988
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcc
Q 015158 317 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSG 370 (412)
Q Consensus 317 r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~ 370 (412)
|.+. ++.++||||+++++|+|++.. +|| ++ |.+...|+||+||+|
T Consensus 313 R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 313 RERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8644 478899999999999999976 555 34 889999999999987
No 72
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=2.6e-34 Score=265.41 Aligned_cols=318 Identities=20% Similarity=0.258 Sum_probs=245.2
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 51 LRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 51 ~~~l~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
.+.+...+|. |+..|++++..|... .+-++++..|||||.+++++++..+..+. ++.+.+||.-|++|.+
T Consensus 253 ~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 253 AKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALMAPTEILAEQHY 328 (677)
T ss_pred HHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEeccHHHHHHHHH
Confidence 3455667898 999999999999874 35699999999999999999999988764 8999999999999999
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHH
Q 015158 125 KVMRALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKD 200 (412)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~ 200 (412)
+.+.++....++.+..++|..+..... ....+..+|+|+|+ .+......+++++++|+||=|++ +-
T Consensus 329 ~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTH-----ALiQd~V~F~~LgLVIiDEQHRF-----GV 398 (677)
T COG1200 329 ESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTH-----ALIQDKVEFHNLGLVIIDEQHRF-----GV 398 (677)
T ss_pred HHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcc-----hhhhcceeecceeEEEEeccccc-----cH
Confidence 999999999999999999988765543 34457799999994 44455566789999999999994 33
Q ss_pred HHHHHHHhCCC-CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCC
Q 015158 201 QIYDIFQLLPP-KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAIT 279 (412)
Q Consensus 201 ~~~~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 279 (412)
.=+..+..... .+.++.|||||-|....+. .+++...-.+......+..+...+..........+.+.+-+. .+.
T Consensus 399 ~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~Gr 474 (677)
T COG1200 399 HQRLALREKGEQNPHVLVMTATPIPRTLALT--AFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA--KGR 474 (677)
T ss_pred HHHHHHHHhCCCCCcEEEEeCCCchHHHHHH--HhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCC
Confidence 33333333334 6789999999988654433 344433333333333334455555544443333444443333 456
Q ss_pred cEEEEEcchh--------HHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 280 QSVIFVNTRR--------KVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 280 k~lif~~~~~--------~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
++.+.|+-++ .++..++.|+.. +..+..+||.|+..++++++++|++|+++|||+|..+++|||+|+++.
T Consensus 475 QaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATv 554 (677)
T COG1200 475 QAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATV 554 (677)
T ss_pred EEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeE
Confidence 8999998664 456677777754 456999999999999999999999999999999999999999999999
Q ss_pred EEEccC-CCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 350 VINYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 350 vi~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
+++.+. .+..+++.|.-||+||.+..+.|++++.+..
T Consensus 555 MVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 555 MVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 987643 4667999999999999999999999998876
No 73
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2e-34 Score=272.21 Aligned_cols=317 Identities=20% Similarity=0.192 Sum_probs=236.8
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|..++..++.|+ +..+.||+|||+++.++++.....+ +.++|++||..|+.|.++.+..++...++.
T Consensus 101 g~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G---~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 101 GQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAG---LPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred CCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcC---CeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 555 9999999999999998 9999999999999999999775544 589999999999999999999999989999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC--------------------------CCCCCceEEEEeCCc
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS--------------------------LRPDNIRIFVLDEAD 191 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~--------------------------~~~~~~~~iiiDE~h 191 (412)
+..+.|+.+.. ......+++|+++|...|.--+.+.. ...+.+.+.|+||++
T Consensus 175 v~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvD 252 (656)
T PRK12898 175 VGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEAD 252 (656)
T ss_pred EEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccc
Confidence 99999987643 33344678999999988733222211 113557789999999
Q ss_pred hhh-ccC-----------------cHHHHHHHHHhCC-------------------------------------------
Q 015158 192 EML-SRG-----------------FKDQIYDIFQLLP------------------------------------------- 210 (412)
Q Consensus 192 ~~~-~~~-----------------~~~~~~~i~~~~~------------------------------------------- 210 (412)
.++ +.. +......+...+.
T Consensus 253 SiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~ 332 (656)
T PRK12898 253 SVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREE 332 (656)
T ss_pred ceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHH
Confidence 643 100 0000000100000
Q ss_pred --------------------------------------------------------------------------CCceEE
Q 015158 211 --------------------------------------------------------------------------PKIQVG 216 (412)
Q Consensus 211 --------------------------------------------------------------------------~~~~~i 216 (412)
.-.++.
T Consensus 333 ~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~ 412 (656)
T PRK12898 333 LVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLA 412 (656)
T ss_pred HHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHh
Confidence 013688
Q ss_pred EEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHH
Q 015158 217 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWL 294 (412)
Q Consensus 217 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~ 294 (412)
+||||......++...+...++.+........ ...+.++..+ ...+...+.+.+... ...++||||++++.++.+
T Consensus 413 GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t-~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L 489 (656)
T PRK12898 413 GMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLT-AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERL 489 (656)
T ss_pred cccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHH
Confidence 99999987665555555555555444443321 1222233333 355777777777664 246899999999999999
Q ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC---CCC-----EEEEccCCCChhhHHHhh
Q 015158 295 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRI 366 (412)
Q Consensus 295 ~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~ 366 (412)
++.|.+.|+.+..+||.+.. ++..+..+..+...|+|||+++++|+|++ .+. +||.++.|.|...|.|++
T Consensus 490 ~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~ 567 (656)
T PRK12898 490 SALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLA 567 (656)
T ss_pred HHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhc
Confidence 99999999999999998654 44455555656677999999999999999 565 999999999999999999
Q ss_pred hhcccCCCCceEEEEeccCcH
Q 015158 367 GRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 367 GR~~R~g~~g~~~~~~~~~~~ 387 (412)
||+||.|.+|.++.|++..|.
T Consensus 568 GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 568 GRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred ccccCCCCCeEEEEEechhHH
Confidence 999999999999999998664
No 74
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=4.6e-34 Score=290.31 Aligned_cols=291 Identities=21% Similarity=0.260 Sum_probs=211.5
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 49 NLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 49 ~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
++.+.+.......|+++|+.+++.++.|+++++.+|||+|||..+ +++...+.. .+.+++|++||++|+.|+.+.+.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~-l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFG-LAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 344445443334599999999999999999999999999999744 444433322 25689999999999999999999
Q ss_pred HhhcccCcEE---EEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc------
Q 015158 129 ALGDYLGVKV---HACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS------ 195 (412)
Q Consensus 129 ~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~------ 195 (412)
.+....++.. ..++|+.+..... ....++++|+|+||+.|...+.... . +++++|+||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhccccHH
Confidence 9887666543 3467776654432 2233568999999999988776422 2 799999999999987
Q ss_pred -----cCcHHH-HHHH----------------------HHhCCCCce--EEEEeecC-ChHHHHHHHHhcCCCeEEEecC
Q 015158 196 -----RGFKDQ-IYDI----------------------FQLLPPKIQ--VGVFSATM-PPEALEITRKFMNKPVRILVKR 244 (412)
Q Consensus 196 -----~~~~~~-~~~i----------------------~~~~~~~~~--~i~~SAT~-~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
.+|... +..+ +..++...+ ++++|||. +.... ..++.....+....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccceEecC
Confidence 345442 3332 223333433 56789994 33222 12344444455555
Q ss_pred CccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcch---hHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHH
Q 015158 245 DELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTR---RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIM 321 (412)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~ 321 (412)
......++.+.+..... +...+.++++... .++||||+++ +.|+.+++.|++.|+.+..+||+++ ...+
T Consensus 297 ~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l 368 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDED---LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDY 368 (1171)
T ss_pred ccccccceEEEEEeccc---HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHH
Confidence 44455666666654332 2345666766653 6899999999 9999999999999999999999986 3689
Q ss_pred HHHhcCCCcEEEEc----CCCcCCCCCCC-CCEEEEccCC
Q 015158 322 REFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 356 (412)
Q Consensus 322 ~~f~~g~~~vlv~t----~~~~~G~d~~~-~~~vi~~~~~ 356 (412)
+.|++|+++|||+| +.+++|+|+|+ +++||+++.|
T Consensus 369 ~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 369 EKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 99999999999995 89999999999 8999986655
No 75
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=6e-35 Score=277.08 Aligned_cols=329 Identities=21% Similarity=0.280 Sum_probs=240.2
Q ss_pred HCCCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhcc-------CCCceeEEEEcCCHHHHHHHHHHH
Q 015158 56 AYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDY-------GLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~-------~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
-++|..++..|.++++...+ +.|.+|+||||+|||..++++++..+.+ .+.+-+++||+|.++|+.++.+.|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 45888899999999999886 4799999999999999999999998874 123468999999999999999999
Q ss_pred HHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC---CCCCCceEEEEeCCchhhccCcHHHHHH
Q 015158 128 RALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS---LRPDNIRIFVLDEADEMLSRGFKDQIYD 204 (412)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 204 (412)
.+-....|+.+..++|+....... ...++|+|+|||+|--.-+++. -.+..+++||+||+|.+-+ ..+..++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHH
Confidence 988888899999999998754443 3457999999999954433322 2246789999999996544 34555555
Q ss_pred HHHh-------CCCCceEEEEeecCChHHHHHHHHhcCCC--eEEEecCCccccCCceEEEEEeccc----------hhh
Q 015158 205 IFQL-------LPPKIQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFHVNVEKE----------EWK 265 (412)
Q Consensus 205 i~~~-------~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 265 (412)
+... .....+++++|||+|+ ......+++-+ .-+........+......+.-.... ...
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN--~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPN--YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCC--HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 5443 3467899999999976 33344444432 1122222222233333333322221 112
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC-----------------------CCeeEEecCCCCHHHHHHHHH
Q 015158 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-----------------------DHTVSATHGDMDQNTRDIIMR 322 (412)
Q Consensus 266 ~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~-----------------------~~~~~~~~~~~~~~~r~~~~~ 322 (412)
.+.+.++++. +..++|||.++..+.+.++.|.++ .....++|+++...+|..+.+
T Consensus 339 ~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~ 416 (1230)
T KOG0952|consen 339 YDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEK 416 (1230)
T ss_pred HHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHH
Confidence 2333344443 458999999999999888888654 134778999999999999999
Q ss_pred HHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC-----------CChhhHHHhhhhcccCC--CCceEEEEeccCcHHH
Q 015158 323 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-----------TQPENYLHRIGRSGRFG--RKGVAINFVTRDDERM 389 (412)
Q Consensus 323 ~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~-----------~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~ 389 (412)
.|..|.++|++||..+..|+|+| +.+||+-+.+ .+.-+.+|..|||||.. ..|.++++.+.+...+
T Consensus 417 ~F~~G~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 417 EFKEGHIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHhcCCceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 99999999999999999999999 5555554433 24567899999999964 5688888888776665
Q ss_pred HHHH
Q 015158 390 LFDI 393 (412)
Q Consensus 390 ~~~~ 393 (412)
+..+
T Consensus 496 Y~sL 499 (1230)
T KOG0952|consen 496 YESL 499 (1230)
T ss_pred HHHH
Confidence 4433
No 76
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=6.9e-35 Score=271.46 Aligned_cols=292 Identities=18% Similarity=0.229 Sum_probs=207.7
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+++|++|+..+.+ ++++++++|||+|||.+++..+.... .++|||||+..|+.||.+.+....... .
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcCCc-c
Confidence 399999999999998 89999999999999999876665432 149999999999999998777754321 2
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 216 (412)
.+..+.|+... .. . ..|.|+|++++.+......+..+.+++||+||||++.+..+......+.... .++
T Consensus 109 ~~g~~~~~~~~-~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~----~~L 177 (442)
T COG1061 109 EIGIYGGGEKE-LE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY----PRL 177 (442)
T ss_pred ccceecCceec-cC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhccc----cee
Confidence 34444443331 11 1 3699999999987521123333479999999999987765443333333322 289
Q ss_pred EEeecCChHHHH---HHHHhcCCCeEEEecCC------ccccCCceEEEEEec---------------------------
Q 015158 217 VFSATMPPEALE---ITRKFMNKPVRILVKRD------ELTLEGIKQFHVNVE--------------------------- 260 (412)
Q Consensus 217 ~~SAT~~~~~~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~--------------------------- 260 (412)
++||||...... .+...++ +..+..... ...+..+........
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAE 256 (442)
T ss_pred eeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHH
Confidence 999998643211 1222222 222222211 111111111111000
Q ss_pred --------cchhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015158 261 --------KEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331 (412)
Q Consensus 261 --------~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 331 (412)
....+...+...+..+ ...+++||+.+..+++.++..+...+. +..+++..+..+|..+++.|+.|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~ 335 (442)
T COG1061 257 NEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKV 335 (442)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence 0112233444445544 467999999999999999999998877 889999999999999999999999999
Q ss_pred EEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC
Q 015158 332 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 332 lv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
|+++.++.+|+|+|+++++|+.++..|...|.||+||+.|.
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999993
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=4.3e-34 Score=273.03 Aligned_cols=316 Identities=17% Similarity=0.178 Sum_probs=222.0
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (412)
|++.|......+..| .++.++||+|||++++++++.....+ ..++|++|+..|+.|+++.+..++..+|+.+...
T Consensus 71 pydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 71 PYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred ccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 455555544444444 69999999999999999987655443 4699999999999999999999998899999887
Q ss_pred EcCcc---hHHHHHHhcCCCcEEEeChHHH-HHHHHc------CCCCCCCceEEEEeCCchhh-ccC-------------
Q 015158 142 VGGTS---VREDQRILSSGVHVVVGTPGRV-FDMLRR------QSLRPDNIRIFVLDEADEML-SRG------------- 197 (412)
Q Consensus 142 ~~~~~---~~~~~~~~~~~~~iii~T~~~l-~~~~~~------~~~~~~~~~~iiiDE~h~~~-~~~------------- 197 (412)
.++.. ...........++|+++||..| ...+.. +...++++.++|+||||.++ +..
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~ 225 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQ 225 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccc
Confidence 76521 1222333445789999999999 444422 23345788999999999864 110
Q ss_pred --cHHHHHHHHHhCC-----------------------------------------------------------------
Q 015158 198 --FKDQIYDIFQLLP----------------------------------------------------------------- 210 (412)
Q Consensus 198 --~~~~~~~i~~~~~----------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 226 ~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~ 305 (762)
T TIGR03714 226 SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN 305 (762)
T ss_pred hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 0011111111110
Q ss_pred ----------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCCCe
Q 015158 211 ----------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNKPV 238 (412)
Q Consensus 211 ----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 238 (412)
--.++.|||+|......++ ...++-.+
T Consensus 306 ~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef-~~iY~l~v 384 (762)
T TIGR03714 306 GEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF-IETYSLSV 384 (762)
T ss_pred CEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH-HHHhCCCE
Confidence 0136788888875544443 34544433
Q ss_pred EEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh--cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHH
Q 015158 239 RILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 316 (412)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 316 (412)
............ ...-........+...+.+.+.. ....++||||++++.++.+++.|.+.|+.+..+||.+...+
T Consensus 385 ~~IPt~kp~~r~--d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E 462 (762)
T TIGR03714 385 VKIPTNKPIIRI--DYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKE 462 (762)
T ss_pred EEcCCCCCeeee--eCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHH
Confidence 222111111111 11111222334566767666655 35679999999999999999999999999999999999888
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCcCCCCCC---------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 317 RDIIMREFRSGSSRVLITTDLLARGIDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 317 r~~~~~~f~~g~~~vlv~t~~~~~G~d~~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
+..+.+.++.| .|+|+|+++++|+|++ ++++|+.+++|....+ .|++||+||.|.+|.++.|++..|.
T Consensus 463 ~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 463 AQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred HHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 87777666555 7999999999999999 8899999988877666 9999999999999999999988655
Q ss_pred H
Q 015158 388 R 388 (412)
Q Consensus 388 ~ 388 (412)
-
T Consensus 540 l 540 (762)
T TIGR03714 540 L 540 (762)
T ss_pred h
Confidence 3
No 78
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.4e-34 Score=278.89 Aligned_cols=321 Identities=20% Similarity=0.264 Sum_probs=258.0
Q ss_pred HCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 56 AYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.++|. -++-|..|++.+.+. .+-+|||..|.|||.+++-+++..+..+ ++|.++|||.-|++|.++.|++
T Consensus 590 ~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 590 SFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred cCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccHHhHHHHHHHHHH
Confidence 67888 699999999998863 4779999999999999999999888766 5999999999999999999999
Q ss_pred hhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHH
Q 015158 130 LGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDI 205 (412)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i 205 (412)
....+++++..+..-.+.+... ....+..||+|+| +.+......+.+++++||||=|++ +-.-++-
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRF-----GVk~KEk 735 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRF-----GVKHKEK 735 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhc-----CccHHHH
Confidence 8888899998888766655543 3356789999999 445566677889999999999984 3344555
Q ss_pred HHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEE
Q 015158 206 FQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFV 285 (412)
Q Consensus 206 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~ 285 (412)
++.++.++-++-|||||-|....+......+...+...+.... .+..++...+...-+...+.++. ++|.+...+
T Consensus 736 LK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~--pV~T~V~~~d~~~ireAI~REl~---RgGQvfYv~ 810 (1139)
T COG1197 736 LKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRL--PVKTFVSEYDDLLIREAILRELL---RGGQVFYVH 810 (1139)
T ss_pred HHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCc--ceEEEEecCChHHHHHHHHHHHh---cCCEEEEEe
Confidence 5556678889999999999887777777776666655554433 35555555554333333333333 458899999
Q ss_pred cchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc-CCCChhhH
Q 015158 286 NTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-LPTQPENY 362 (412)
Q Consensus 286 ~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~-~~~s~~~~ 362 (412)
|.++..+.+++.|++. ...+.+.||.|+..+-+.++..|.+|+++|||||.++++|+|+|+++++|+-. -.+..+++
T Consensus 811 NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQL 890 (1139)
T COG1197 811 NRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQL 890 (1139)
T ss_pred cchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHH
Confidence 9999999999999986 55799999999999999999999999999999999999999999999998643 34567999
Q ss_pred HHhhhhcccCCCCceEEEEeccC------cHHHHHHHHH
Q 015158 363 LHRIGRSGRFGRKGVAINFVTRD------DERMLFDIQK 395 (412)
Q Consensus 363 ~Q~~GR~~R~g~~g~~~~~~~~~------~~~~~~~~~~ 395 (412)
-|.-||+||.+..+.||.++.+. ..+.++.+..
T Consensus 891 yQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI~~ 929 (1139)
T COG1197 891 YQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAIAS 929 (1139)
T ss_pred HHhccccCCccceEEEEEeecCccccCHHHHHHHHHHHh
Confidence 99999999999999999999863 4444444444
No 79
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-33 Score=272.80 Aligned_cols=319 Identities=18% Similarity=0.199 Sum_probs=234.6
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.. |++.|..+...+.+|+ +..+.||+|||++++++++.....+ ..+.|++||..|+.|.++.+..+....|+
T Consensus 75 ~g~~-p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G---~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGMR-PYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEG---KGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCCC-CchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 3665 9999999998888876 9999999999999999988555444 48999999999999999999999999999
Q ss_pred EEEEEEcCcc-hHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCCCceEEEEeCCchhh-ccC----------
Q 015158 137 KVHACVGGTS-VREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPDNIRIFVLDEADEML-SRG---------- 197 (412)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iiiDE~h~~~-~~~---------- 197 (412)
.+..+.|+.+ ..... ....++|+++|+..| +.++... ....+.+.++|+||+|.++ +..
T Consensus 149 ~v~~i~g~~~~~~~r~--~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 149 TVGLNFSDIDDASEKK--AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred eEEEEeCCCCcHHHHH--HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 9999999887 33332 234589999999888 3333321 1245778999999999754 100
Q ss_pred -----cHHHHHHHHHhCC--------------------------------------------------------------
Q 015158 198 -----FKDQIYDIFQLLP-------------------------------------------------------------- 210 (412)
Q Consensus 198 -----~~~~~~~i~~~~~-------------------------------------------------------------- 210 (412)
+......+...+.
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYi 306 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYI 306 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEE
Confidence 0111111111110
Q ss_pred -------------------------------------------------------CCceEEEEeecCChHHHHHHHHhcC
Q 015158 211 -------------------------------------------------------PKIQVGVFSATMPPEALEITRKFMN 235 (412)
Q Consensus 211 -------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~ 235 (412)
--.++.|||+|...... .+...++
T Consensus 307 V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~-e~~~~Y~ 385 (790)
T PRK09200 307 VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEK-EFFEVYN 385 (790)
T ss_pred EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHH-HHHHHhC
Confidence 01367888888755443 3444554
Q ss_pred CCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 236 KPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
-.+................. .......+...+.+.+... ...++||||++++.++.++..|.+.|+.+..+||.+.
T Consensus 386 l~v~~IPt~kp~~r~d~~~~--i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDK--VFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred CcEEECCCCCCcccccCCCe--EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 44332211111111111111 1123345777777766552 5679999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC---CCCC-----EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
..++..+...+..| .|+|||+++++|+|+ +.+. +||.++.|.|...|.|++||+||.|.+|.++.|++..
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 88877777766554 799999999999999 5888 9999999999999999999999999999999999886
Q ss_pred cHH
Q 015158 386 DER 388 (412)
Q Consensus 386 ~~~ 388 (412)
|.-
T Consensus 542 D~l 544 (790)
T PRK09200 542 DDL 544 (790)
T ss_pred HHH
Confidence 553
No 80
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.7e-33 Score=265.95 Aligned_cols=319 Identities=22% Similarity=0.245 Sum_probs=236.6
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.. |++.|..+...+.+|+ +..++||+|||+++.++++.....+ ..+.|++||..|+.|.++.+..+....|+
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 3666 8999999998888776 9999999999999999885433333 36999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCCCceEEEEeCCchhhc-cC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPDNIRIFVLDEADEMLS-RG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iiiDE~h~~~~-~~----------- 197 (412)
++..+.|+.+....... -.++|+++|+..| +.++... ...++.+.++|+||+|.++- ..
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~ 204 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAE 204 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCC
Confidence 99999998775443333 3479999999999 6666554 23567899999999998542 10
Q ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Q 015158 198 ----FKDQIYDIFQLLP--------------------------------------------------------------- 210 (412)
Q Consensus 198 ----~~~~~~~i~~~~~--------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 205 ~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV 284 (745)
T TIGR00963 205 KSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIV 284 (745)
T ss_pred CchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0000000000000
Q ss_pred ------------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCC
Q 015158 211 ------------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNK 236 (412)
Q Consensus 211 ------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 236 (412)
--.++.|||+|...... .+...++-
T Consensus 285 ~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~-E~~~iY~l 363 (745)
T TIGR00963 285 RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEE-EFEKIYNL 363 (745)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHH-HHHHHhCC
Confidence 01367888888765443 34444444
Q ss_pred CeEE-EecCCccccCCceEEEEEeccchhhHHHHHHHH-Hhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 237 PVRI-LVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY-ETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 237 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
.+.. ......... .... ........+...+.+.+ ..+ .+.++||||++++.++.+++.|.+.|+....+|+.
T Consensus 364 ~vv~IPtnkp~~R~-d~~d--~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 364 EVVVVPTNRPVIRK-DLSD--LVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CEEEeCCCCCeeee-eCCC--eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 4332 222211111 1111 11222234555554444 222 56799999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC-------CCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
..+|+..+..|..+...|+|||+++++|+|++. ..+||.++.|.|...+.|+.||+||.|.+|.+..|++..|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 778899999999999999999999999999998 5699999999999999999999999999999999999886
Q ss_pred HHH
Q 015158 387 ERM 389 (412)
Q Consensus 387 ~~~ 389 (412)
.-.
T Consensus 519 ~l~ 521 (745)
T TIGR00963 519 NLM 521 (745)
T ss_pred HHH
Confidence 644
No 81
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.2e-33 Score=275.36 Aligned_cols=336 Identities=17% Similarity=0.132 Sum_probs=226.6
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEE
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKV 138 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 138 (412)
.|.|||..++..+... .++++..++|.|||..+.+.+...+..+ ...++|||||. .|..||..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 4999999999887653 5789999999999988866665544443 34589999996 89999999986643 4444
Q ss_pred EEEEcCcchHHHH--HHhcCCCcEEEeChHHHHHHH-HcCCCCCCCceEEEEeCCchhhccC--cHHHHHHHHHhCCCCc
Q 015158 139 HACVGGTSVREDQ--RILSSGVHVVVGTPGRVFDML-RRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYDIFQLLPPKI 213 (412)
Q Consensus 139 ~~~~~~~~~~~~~--~~~~~~~~iii~T~~~l~~~~-~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~i~~~~~~~~ 213 (412)
..+.+........ .......+++|+|++.+...- ....+....|++||+||||++.+.. -......+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 4444332111000 001124689999999886421 1112223478999999999986321 1122333322223345
Q ss_pred eEEEEeecCChH-HHH------------------H------------------------------HHHhcCC--------
Q 015158 214 QVGVFSATMPPE-ALE------------------I------------------------------TRKFMNK-------- 236 (412)
Q Consensus 214 ~~i~~SAT~~~~-~~~------------------~------------------------------~~~~~~~-------- 236 (412)
.++++||||... ..+ + +..+++.
T Consensus 307 ~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~ 386 (956)
T PRK04914 307 GVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQ 386 (956)
T ss_pred CEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHh
Confidence 689999999510 000 0 0000000
Q ss_pred ---------------------------CeEEEecCCc---cccCCceEEEEEec--------------------------
Q 015158 237 ---------------------------PVRILVKRDE---LTLEGIKQFHVNVE-------------------------- 260 (412)
Q Consensus 237 ---------------------------~~~~~~~~~~---~~~~~~~~~~~~~~-------------------------- 260 (412)
.+.+...+.. .............+
T Consensus 387 ~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe~~~~ 466 (956)
T PRK04914 387 AANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPEQIYQ 466 (956)
T ss_pred hhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHHHHHH
Confidence 0000000000 00000011101000
Q ss_pred ---------cchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHH-hcCCCeeEEecCCCCHHHHHHHHHHHhcC--C
Q 015158 261 ---------KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSG--S 328 (412)
Q Consensus 261 ---------~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L-~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~ 328 (412)
..+.+...+.++++....+|+||||++++.+..+.+.| ...|+.+..+||+++..+|.++++.|+++ .
T Consensus 467 ~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~ 546 (956)
T PRK04914 467 EFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG 546 (956)
T ss_pred HHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC
Confidence 01234556777777777789999999999999999999 46799999999999999999999999984 5
Q ss_pred CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccc
Q 015158 329 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 401 (412)
Q Consensus 329 ~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (412)
..|||||+++++|+|++.+++||+++.|+++..|.||+||++|.|+.+.+.++...........+.++|...+
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 8999999999999999999999999999999999999999999999998888877766555666777666544
No 82
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=263.74 Aligned_cols=310 Identities=19% Similarity=0.266 Sum_probs=234.4
Q ss_pred HHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 55 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 55 ~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
..++|. |-.+|++|+.++..|.+++|.|+|.+|||.++..++.-...+. .+.+|..|-++|.+|-++.|+.-...
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~---TR~iYTSPIKALSNQKfRDFk~tF~D- 366 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHM---TRTIYTSPIKALSNQKFRDFKETFGD- 366 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhc---cceEecchhhhhccchHHHHHHhccc-
Confidence 345777 9999999999999999999999999999999988887766554 48999999999999999999885543
Q ss_pred CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 135 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
+..++|+.... +.+.++|+|.+.|.+++.+..--.+++..||+||+|.+.+...+..|.+++-.+|.+++
T Consensus 367 ---vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 367 ---VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred ---cceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 33888887644 45789999999999999887766788999999999999988888999999999999999
Q ss_pred EEEEeecCChHHHHHHHHhc---CCCeEEEecCCccccCCceEEEEEecc------------------------------
Q 015158 215 VGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFHVNVEK------------------------------ 261 (412)
Q Consensus 215 ~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 261 (412)
+|++|||.++. .++..+.. ++.+.+... ...+....++.+.-..
T Consensus 437 ~IlLSATVPN~-~EFA~WIGRtK~K~IyViST--~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~ 513 (1248)
T KOG0947|consen 437 FILLSATVPNT-LEFADWIGRTKQKTIYVIST--SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFV 513 (1248)
T ss_pred EEEEeccCCCh-HHHHHHhhhccCceEEEEec--CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccc
Confidence 99999999754 34333332 222222211 1111111111100000
Q ss_pred ------------------------c----------hh---hHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCC--
Q 015158 262 ------------------------E----------EW---KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-- 302 (412)
Q Consensus 262 ------------------------~----------~~---~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~-- 302 (412)
. .. ..-.+...+.+...-+++|||-|++.|++.+++|...+
T Consensus 514 ~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~ 593 (1248)
T KOG0947|consen 514 DVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLT 593 (1248)
T ss_pred ccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcc
Confidence 0 00 12223333444444689999999999999999997641
Q ss_pred -------------------------------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 303 -------------------------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 303 -------------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
..+.++||++-+--++-++..|..|-++||++|.++.+|+|.|
T Consensus 594 ~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP 673 (1248)
T KOG0947|consen 594 DSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP 673 (1248)
T ss_pred cchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC
Confidence 3488999999999999999999999999999999999999999
Q ss_pred CCCEEEEccC---------CCChhhHHHhhhhcccCCCC--ceEEEEec
Q 015158 346 QVSLVINYDL---------PTQPENYLHRIGRSGRFGRK--GVAINFVT 383 (412)
Q Consensus 346 ~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~ 383 (412)
+++|++.+. ...+.+|.||.|||||+|-+ |.++++..
T Consensus 674 -ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 674 -ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred -ceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 455554433 24688999999999999966 44444443
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.7e-32 Score=270.50 Aligned_cols=303 Identities=22% Similarity=0.315 Sum_probs=208.0
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH----HHHHHHHHHHHH-hhcccCcE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR----ELAQQIEKVMRA-LGDYLGVK 137 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~----~L~~q~~~~~~~-~~~~~~~~ 137 (412)
+.+-.+++..+.+++.++|+|+||||||+..-. ++.....+ ..+.+++..|++ +++.++++++.. ++...|+.
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq-~lle~g~g-~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~ 153 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTTQLPK-ICLELGRG-VKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYK 153 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHH-HHHHcCCC-CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceecee
Confidence 556667788888888899999999999986432 22222222 123455666865 566666666654 32222322
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch-hhccCcHHH-HHHHHHhCCCCceE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE-MLSRGFKDQ-IYDIFQLLPPKIQV 215 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~ 215 (412)
+ ... .....+..|+++|++.|++.+..... ++++++||+||||+ ..+.++... +..++.. .++.++
T Consensus 154 v----rf~------~~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlKv 221 (1294)
T PRK11131 154 V----RFN------DQVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLKV 221 (1294)
T ss_pred e----cCc------cccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhc-CCCceE
Confidence 2 111 11234579999999999998876543 78999999999995 667665543 3333322 246899
Q ss_pred EEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccc-----hhhHHHHHHHHH---hcCCCcEEEEEcc
Q 015158 216 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKE-----EWKLETLCDLYE---TLAITQSVIFVNT 287 (412)
Q Consensus 216 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~---~~~~~k~lif~~~ 287 (412)
|++|||++.+ .+...+.+.+ .+.+.... ..+...+...... ......+...+. ....+.+|||+++
T Consensus 222 ILmSATid~e--~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg 295 (1294)
T PRK11131 222 IITSATIDPE--RFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSG 295 (1294)
T ss_pred EEeeCCCCHH--HHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCC
Confidence 9999999753 3444343344 34443322 2244444443221 112222222222 2345789999999
Q ss_pred hhHHHHHHHHHhcCCCe---eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC---------
Q 015158 288 RRKVDWLTDKMRSRDHT---VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------- 355 (412)
Q Consensus 288 ~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~--------- 355 (412)
.++++.+++.|++.+.. +..+||+++..+|..+++. .|..+|||+|+++++|+|+|++++||+++.
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~ 373 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYR 373 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccc
Confidence 99999999999987654 6789999999999999885 578899999999999999999999999863
Q ss_pred ---------CCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 356 ---------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 356 ---------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
+.|.+++.||+||+||. .+|.||.++++.+..
T Consensus 374 ~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 374 TKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 34668999999999999 689999999987654
No 84
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.3e-33 Score=256.49 Aligned_cols=310 Identities=18% Similarity=0.256 Sum_probs=237.5
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
+|. |-|+|..|+..+-.+.+++|.|.|.+|||.++-.+++..+.... ++||..|-++|.+|-++++..-.. .
T Consensus 127 PF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ---RVIYTSPIKALSNQKYREl~~EF~----D 198 (1041)
T KOG0948|consen 127 PFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ---RVIYTSPIKALSNQKYRELLEEFK----D 198 (1041)
T ss_pred Ccc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC---eEEeeChhhhhcchhHHHHHHHhc----c
Confidence 455 89999999999999999999999999999999999999887664 999999999999999998877433 3
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 217 (412)
|.+.+|+.+.. +.+..+|+|.+.|.+++.++..-.+.+..||+||+|.+-+...+-.|.+-+-.+|.+.+.++
T Consensus 199 VGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 199 VGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred cceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEE
Confidence 66778877743 45789999999999999988877888999999999999998888888888889999999999
Q ss_pred EeecCChHHH--HHHHHhcCCCeEEEecCCccccCCceEE---------EEEeccc----hh------------------
Q 015158 218 FSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQF---------HVNVEKE----EW------------------ 264 (412)
Q Consensus 218 ~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----~~------------------ 264 (412)
+|||+++..+ +++..+-.+|..+-. .+..+....++ +..++.. ++
T Consensus 272 LSATiPNA~qFAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~ 349 (1041)
T KOG0948|consen 272 LSATIPNARQFAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGK 349 (1041)
T ss_pred EeccCCCHHHHHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccc
Confidence 9999976432 233334444443221 11222222222 2222211 00
Q ss_pred --------------------hHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC-----------------------
Q 015158 265 --------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----------------------- 301 (412)
Q Consensus 265 --------------------~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~----------------------- 301 (412)
..-.+...+-.....++|||+-|+++|+.++-.+.+.
T Consensus 350 ~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~Ls 429 (1041)
T KOG0948|consen 350 KKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLS 429 (1041)
T ss_pred cccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcC
Confidence 1112233333334468999999999999998777654
Q ss_pred ----------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC---------C
Q 015158 302 ----------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL---------P 356 (412)
Q Consensus 302 ----------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~---------~ 356 (412)
...++++|+++-+--++-+.-.|..|-+++|++|.+++.|+|.|.-++|+ ... .
T Consensus 430 eeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 430 EEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDGKKFRW 508 (1041)
T ss_pred hhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCCcceee
Confidence 23488999999999999999999999999999999999999999544444 322 2
Q ss_pred CChhhHHHhhhhcccCCCC--ceEEEEeccC
Q 015158 357 TQPENYLHRIGRSGRFGRK--GVAINFVTRD 385 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 385 (412)
.|..+|+||.|||||+|.+ |.|++.++..
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 4678999999999999976 5666666654
No 85
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=1.3e-31 Score=270.50 Aligned_cols=303 Identities=18% Similarity=0.223 Sum_probs=198.6
Q ss_pred CChHHHHhhhhhhhc-----CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 61 KPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.+|++|.+|+..+.+ .+++++++|||||||.+++..+...+.. ....++||++|+.+|+.|+.+.|..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 489999999988763 3678999999999998876555443333 2346899999999999999999988632212
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC-----CCCCCCceEEEEeCCchhhcc--------------
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ-----SLRPDNIRIFVLDEADEMLSR-------------- 196 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-----~~~~~~~~~iiiDE~h~~~~~-------------- 196 (412)
..+....+.... ..........|+|+|++++.+.+... ......+++||+||||+....
T Consensus 492 ~~~~~i~~i~~L--~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGL--EDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhh--hhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 111111111100 11112345689999999997765321 134578899999999985321
Q ss_pred -CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc-----cc---cC-Cce-------------
Q 015158 197 -GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-----LT---LE-GIK------------- 253 (412)
Q Consensus 197 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~-~~~------------- 253 (412)
.+...+..++..+ +...||+||||..+.. .+++.++..+..... .. ++ .+.
T Consensus 570 ~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~----~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 570 LDYVSKYRRVLDYF--DAVKIGLTATPALHTT----EIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred hhHHHHHHHHHhhc--CccEEEEecCCccchh----HHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccccc
Confidence 1235666777655 3568999999975432 333433322111000 00 00 000
Q ss_pred -----------EEE-EEecc----c----------hhhH----HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC--
Q 015158 254 -----------QFH-VNVEK----E----------EWKL----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-- 301 (412)
Q Consensus 254 -----------~~~-~~~~~----~----------~~~~----~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~-- 301 (412)
... ...+. . .... ..+.+.+.....+|+||||.++++|+.+++.|.+.
T Consensus 644 e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~ 723 (1123)
T PRK11448 644 EEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFK 723 (1123)
T ss_pred chhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 000 00000 0 0000 11112222223479999999999999999888653
Q ss_pred ----C---CeeEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCC
Q 015158 302 ----D---HTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 373 (412)
Q Consensus 302 ----~---~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 373 (412)
+ ..+..++|+.+ ++..++++|++++. .|+|+++++.+|+|+|.+++|+++.++.|...|.||+||+.|..
T Consensus 724 ~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 724 KKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 1 24566888764 46789999999876 58999999999999999999999999999999999999999975
Q ss_pred C
Q 015158 374 R 374 (412)
Q Consensus 374 ~ 374 (412)
.
T Consensus 802 ~ 802 (1123)
T PRK11448 802 P 802 (1123)
T ss_pred c
Confidence 4
No 86
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=7.3e-31 Score=256.22 Aligned_cols=312 Identities=21% Similarity=0.276 Sum_probs=217.0
Q ss_pred CChHHHHhhhhhhhcC---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 61 KPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
.|++.|+++++.+..+ +++++.++||||||.+|+.++...+..+ .++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g---~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG---KQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 4899999999999874 7899999999999999988877776544 589999999999999999998754 567
Q ss_pred EEEEEcCcchHHH----HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc------HHHHHHHHH
Q 015158 138 VHACVGGTSVRED----QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF------KDQIYDIFQ 207 (412)
Q Consensus 138 ~~~~~~~~~~~~~----~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~------~~~~~~i~~ 207 (412)
+..++|+.+.... .....+..+|+|+|+..+. ..+.++++||+||+|....+.. ...+. +..
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va-~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLA-VVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHH-HHH
Confidence 8888988765433 2334567899999987764 2356899999999998653321 12222 223
Q ss_pred hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc--cccCCceEEEEEecc------chhhHHHHHHHHHhc--C
Q 015158 208 LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFHVNVEK------EEWKLETLCDLYETL--A 277 (412)
Q Consensus 208 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~--~ 277 (412)
....+.+++++||||+.+....... +....+...... ...+.+. ...... .......+.+.+++. .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~--~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVE--IIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEE--EEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 3446788999999998665544432 222222222111 1112111 111111 001112333333332 3
Q ss_pred CCcEEEEEcchh------------------------------------------------------------HHHHHHHH
Q 015158 278 ITQSVIFVNTRR------------------------------------------------------------KVDWLTDK 297 (412)
Q Consensus 278 ~~k~lif~~~~~------------------------------------------------------------~~~~~~~~ 297 (412)
++++|||+|.+. .++.+.+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 357888877531 44566777
Q ss_pred HhcC--CCeeEEecCCCC--HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC--CC----------hhh
Q 015158 298 MRSR--DHTVSATHGDMD--QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQ----------PEN 361 (412)
Q Consensus 298 L~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~--~s----------~~~ 361 (412)
|++. +..+..+|+++. ..+++++++.|.+|+.+|||+|+++..|+|+|+++.|++++.. .+ ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 7665 567889999885 4678999999999999999999999999999999999765443 22 256
Q ss_pred HHHhhhhcccCCCCceEEEEeccCcHHHH
Q 015158 362 YLHRIGRSGRFGRKGVAINFVTRDDERML 390 (412)
Q Consensus 362 ~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 390 (412)
+.|++||+||.+..|.+++.....+...+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~ 554 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVI 554 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHH
Confidence 89999999999999999987766654444
No 87
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=236.19 Aligned_cols=278 Identities=31% Similarity=0.493 Sum_probs=221.4
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhccc---CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCce
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYL---GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIR 183 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 183 (412)
.+..+|+-|+++|++|....++++-... .+.-..+.|+.....++....++.+|+|+||.++...+......+.+..
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 3569999999999999999766653222 3344467777777788888889999999999999999998888888999
Q ss_pred EEEEeCCchhhccCcHHHHHHHHHhCCC------CceEEEEeecCCh-HHHHHHHHhcCCCeEEEecCCccccCCceEEE
Q 015158 184 IFVLDEADEMLSRGFKDQIYDIFQLLPP------KIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFH 256 (412)
Q Consensus 184 ~iiiDE~h~~~~~~~~~~~~~i~~~~~~------~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (412)
++++||++.++..++...+.++...+|. ..+.++.|||+.. +.......++..|.-+....++..++.+.++.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999999998888888888877763 5678999999863 33344555666666666666665555554444
Q ss_pred EEeccc-----------------------------hhh----H-----HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHH
Q 015158 257 VNVEKE-----------------------------EWK----L-----ETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298 (412)
Q Consensus 257 ~~~~~~-----------------------------~~~----~-----~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L 298 (412)
..+... ... . +.-...++.+..++.||||.++..|+.+.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 333221 001 1 11123356667789999999999999999999
Q ss_pred hcCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCC
Q 015158 299 RSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 375 (412)
Q Consensus 299 ~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 375 (412)
++.| +.++.+||+..+.+|++.++.|+.+..++||||+...+|+|+..+-.+|.+.+|.....|++||||+||+..-
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 9874 5789999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred ceEEEEecc
Q 015158 376 GVAINFVTR 384 (412)
Q Consensus 376 g~~~~~~~~ 384 (412)
|.++.++..
T Consensus 606 glaislvat 614 (725)
T KOG0349|consen 606 GLAISLVAT 614 (725)
T ss_pred ceeEEEeec
Confidence 777776643
No 88
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-31 Score=260.42 Aligned_cols=318 Identities=20% Similarity=0.274 Sum_probs=239.4
Q ss_pred HHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 53 GIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 53 ~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.....+|. |-++|++++..+..+.+++|++|||+|||+++.+++...+..+. +++|++|.++|.+|.++++.....
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhh
Confidence 34456888 99999999999999999999999999999999999998887764 799999999999999998877543
Q ss_pred ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCC
Q 015158 133 YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPK 212 (412)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~ 212 (412)
...-.+.+++|+..+. +++.++|+|.|.|.+++.+.......+..||+||+|.+.+...+..|+.++-.+|..
T Consensus 188 dv~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 2223467888887744 457899999999999999888888899999999999999998899999999999999
Q ss_pred ceEEEEeecCChHHH--HHHHHhcCCCeEEEecCCccccCCceEEEEEe-------ccch--------------------
Q 015158 213 IQVGVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFHVNV-------EKEE-------------------- 263 (412)
Q Consensus 213 ~~~i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-------------------- 263 (412)
.+++++|||.++..+ ..++..-..+..+....... ....++++.- +...
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~Rp--vPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRP--VPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCC--CCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 999999999976422 23333333333332222111 1112211111 0000
Q ss_pred --------------------------hhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC----------------
Q 015158 264 --------------------------WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---------------- 301 (412)
Q Consensus 264 --------------------------~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~---------------- 301 (412)
.....+...+.....-++++|+-++..|+..+..+...
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 00011233333334458999999999999887777522
Q ss_pred ------------CC-------------eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-
Q 015158 302 ------------DH-------------TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 355 (412)
Q Consensus 302 ------------~~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 355 (412)
+. .+.++|+++-+..+..+.+.|..|-.+|+++|.+++.|+|.|.-++|+ .+.
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeE
Confidence 11 256889999999999999999999999999999999999999544443 332
Q ss_pred --------CCChhhHHHhhhhcccCCCC--ceEEEEecc
Q 015158 356 --------PTQPENYLHRIGRSGRFGRK--GVAINFVTR 384 (412)
Q Consensus 356 --------~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~ 384 (412)
.-++.+|.|+.||+||+|.+ |.++++..+
T Consensus 498 K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 498 KFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred EecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 35789999999999999976 566665433
No 89
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=1.3e-29 Score=249.30 Aligned_cols=310 Identities=17% Similarity=0.168 Sum_probs=202.0
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc--CcE
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL--GVK 137 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~ 137 (412)
..|+|+|+.+......+..+++.+|||+|||.+++.++......+ ...+++|..||.++++++++++.++.... ..+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~-~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG-LADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 359999998865544567789999999999999987766544333 34589999999999999999987643211 345
Q ss_pred EEEEEcCcchHHHH---------------------HHhc------CCCcEEEeChHHHHHHHHcCC-CCCCC----ceEE
Q 015158 138 VHACVGGTSVREDQ---------------------RILS------SGVHVVVGTPGRVFDMLRRQS-LRPDN----IRIF 185 (412)
Q Consensus 138 ~~~~~~~~~~~~~~---------------------~~~~------~~~~iii~T~~~l~~~~~~~~-~~~~~----~~~i 185 (412)
+...+|........ ..+. --..|+|+|.++++..+...+ ...+. -++|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 66666654321110 0011 115899999999875544321 11122 2489
Q ss_pred EEeCCchhhccCcHHHHHHHHHhC-CCCceEEEEeecCChHHHHHHHHhcCCCeEE----------EecCCc-----ccc
Q 015158 186 VLDEADEMLSRGFKDQIYDIFQLL-PPKIQVGVFSATMPPEALEITRKFMNKPVRI----------LVKRDE-----LTL 249 (412)
Q Consensus 186 iiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~----------~~~~~~-----~~~ 249 (412)
|+||+|.+-.. ....+..++..+ ....++|+||||++....+.+...++..... ...... ...
T Consensus 444 IiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~ 522 (878)
T PRK09694 444 IVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSA 522 (878)
T ss_pred EEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeeccc
Confidence 99999976432 334444444433 3467799999999987766554433211000 000000 000
Q ss_pred -----CCceEEEE-Ee--ccchhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCC---CeeEEecCCCCHHHH
Q 015158 250 -----EGIKQFHV-NV--EKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQNTR 317 (412)
Q Consensus 250 -----~~~~~~~~-~~--~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~---~~~~~~~~~~~~~~r 317 (412)
+.-..... .. .........+..+++.. .+++++||||+++.++.+++.|++.+ ..+..+||.++..+|
T Consensus 523 ~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR 602 (878)
T PRK09694 523 HPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDR 602 (878)
T ss_pred cccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHH
Confidence 00011111 11 11111223344444432 45789999999999999999999764 579999999999998
Q ss_pred H----HHHHHH-hcCC---CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCC
Q 015158 318 D----IIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 374 (412)
Q Consensus 318 ~----~~~~~f-~~g~---~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~ 374 (412)
. ++++.| ++|+ ..|||+|++++.|+|+ +++++|....| ...++||+||++|.+.
T Consensus 603 ~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 603 REKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 4 567777 5565 4799999999999999 57888865555 6899999999999864
No 90
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.1e-30 Score=221.02 Aligned_cols=200 Identities=53% Similarity=0.809 Sum_probs=179.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC--CCceeEEEEcCCHH
Q 015158 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVECQALVLAPTRE 118 (412)
Q Consensus 41 f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~ 118 (412)
|+++++++.+.+.+...++..|+++|.+++..+.+++++++.+|||+|||.+++++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 6788999999999999999999999999999999999999999999999999999999888765 45678999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 119 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
|+.|+.+.+..+....+..+..++|+............+++|+|+|++.+...+.+......+++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999887778888899998877666656666789999999999999888777788899999999999888888
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEE
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRI 240 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 240 (412)
...+..+...++...+++++|||+++.....+..+...++.+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 899999999998899999999999998888888888877654
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.98 E-value=6.4e-30 Score=215.49 Aligned_cols=306 Identities=18% Similarity=0.209 Sum_probs=220.1
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
+|++.|+.+-+.+.+ ..+.+|+|-||+|||......+...+..+ .++.+..|+...+-+.+.++++... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G---~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG---GRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC---CeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 489999998888664 57899999999999988877777777665 5899999999999999999888543 56
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 216 (412)
.+..++|+..... ...++|+|.++|++... .+|++|+||++.+.-..-...-..+..........|
T Consensus 172 ~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhc-------cccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 7788888765322 25799999999987654 789999999998654433344445556666777899
Q ss_pred EEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccch-----hhH-HHHHHHHHhc--CCCcEEEEEcch
Q 015158 217 VFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEE-----WKL-ETLCDLYETL--AITQSVIFVNTR 288 (412)
Q Consensus 217 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~l~~~~~~~--~~~k~lif~~~~ 288 (412)
.+|||++..+...+...-.....+.........+ + ..+.+...-. .++ ..+..++++. .+.+++||++++
T Consensus 238 ylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLp-v-Pkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKGNLRILKLPARFHGKPLP-V-PKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhCCeeEeecchhhcCCCCC-C-CceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 9999998765554443222112111111111111 1 1122222211 111 2556666665 347999999999
Q ss_pred hHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC--CChhhHHH
Q 015158 289 RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENYLH 364 (412)
Q Consensus 289 ~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~--~s~~~~~Q 364 (412)
+..+.++..|++. ...+..+|+. ...|.+..+.|++|++++|++|.++++|+.+|++++.++-... ++.+.++|
T Consensus 316 ~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQ 393 (441)
T COG4098 316 ETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQ 393 (441)
T ss_pred HHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHH
Confidence 9999999999553 3355677774 4578999999999999999999999999999999998866544 78999999
Q ss_pred hhhhcccCC--CCceEEEEeccCcHHH
Q 015158 365 RIGRSGRFG--RKGVAINFVTRDDERM 389 (412)
Q Consensus 365 ~~GR~~R~g--~~g~~~~~~~~~~~~~ 389 (412)
..||+||.- +.|.++.|-.-....+
T Consensus 394 IaGRvGRs~~~PtGdv~FFH~G~skaM 420 (441)
T COG4098 394 IAGRVGRSLERPTGDVLFFHYGKSKAM 420 (441)
T ss_pred HhhhccCCCcCCCCcEEEEeccchHHH
Confidence 999999973 4566665554444433
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.98 E-value=3.6e-30 Score=242.64 Aligned_cols=304 Identities=21% Similarity=0.296 Sum_probs=202.8
Q ss_pred EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH----HHHhc
Q 015158 80 IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED----QRILS 155 (412)
Q Consensus 80 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 155 (412)
++.++||||||.+|+.++...+..+ .++||++|+.+|+.|+.+.+++.. +..+..++++.+.... .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g---~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG---KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 4789999999999987776665543 489999999999999999998754 5667788887654432 33445
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----c-HHHHHHHHHhCCCCceEEEEeecCChHHHHH
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----F-KDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 229 (412)
+..+|+|+|+..++ ..+.++++||+||.|....+. | ...+..+.. ...+.+++++||||+.+....
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra-~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA-KKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH-HhcCCCEEEEeCCCCHHHHHH
Confidence 67899999988764 235689999999999865332 1 122333333 335788999999998654444
Q ss_pred HHHhcCCCeEEEecC--CccccCCceEEEEEeccch---hhHHHHHHHHHhc--CCCcEEEEEcchhH------------
Q 015158 230 TRKFMNKPVRILVKR--DELTLEGIKQFHVNVEKEE---WKLETLCDLYETL--AITQSVIFVNTRRK------------ 290 (412)
Q Consensus 230 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~--~~~k~lif~~~~~~------------ 290 (412)
... +......... .....+.+. ........ .....+.+.+++. .++++|||+|++..
T Consensus 147 ~~~--g~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQ--KAYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred Hhc--CCeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 321 2211111111 111111111 11221111 1122333333332 34589999776543
Q ss_pred ------------------------------------------------HHHHHHHHhcC--CCeeEEecCCCCHHHH--H
Q 015158 291 ------------------------------------------------VDWLTDKMRSR--DHTVSATHGDMDQNTR--D 318 (412)
Q Consensus 291 ------------------------------------------------~~~~~~~L~~~--~~~~~~~~~~~~~~~r--~ 318 (412)
.+.+.+.|++. +..+..+|++++...+ +
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777777766 5688899999876655 8
Q ss_pred HHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC------------ChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 319 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 319 ~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
.+++.|.+|+.+|||+|++++.|+|+|+++.|++++... ....+.|++||+||.++.|.+++.....+
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 999999999999999999999999999999987554431 13568999999999999999987665544
Q ss_pred HHHH-----HHHHHHhcccc
Q 015158 387 ERML-----FDIQKFYNVVI 401 (412)
Q Consensus 387 ~~~~-----~~~~~~~~~~~ 401 (412)
...+ ..++.|+..++
T Consensus 383 ~~~~~~~~~~d~~~f~~~el 402 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQEL 402 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHH
Confidence 3322 23445555544
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.7e-30 Score=259.97 Aligned_cols=308 Identities=19% Similarity=0.222 Sum_probs=211.9
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh-cccCcEEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALG-DYLGVKVHAC 141 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~~~~ 141 (412)
+.+..+.+..+..++.++|+|+||||||+..-..++.. ..+ ..++|++.-|++.-+...++.+.+.. ...|..+...
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~-~~~-~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL-GRG-SHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc-CCC-CCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 44446777778788889999999999998654444332 112 23467778898887777776665532 2223334332
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch-hhccCcHHH-HHHHHHhCCCCceEEEEe
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE-MLSRGFKDQ-IYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~S 219 (412)
..... ....+..|.++|++.|++.+.... .+.++++||+||+|+ ..+.++... +..++.. .++.++|+||
T Consensus 147 vR~~~------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmS 218 (1283)
T TIGR01967 147 VRFHD------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITS 218 (1283)
T ss_pred EcCCc------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEe
Confidence 22111 123456899999999999887654 368899999999995 667665544 4555443 3578999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccc-----hhhHHHHHHHHHh---cCCCcEEEEEcchhHH
Q 015158 220 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKE-----EWKLETLCDLYET---LAITQSVIFVNTRRKV 291 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~---~~~~k~lif~~~~~~~ 291 (412)
||++. .. +..+++....+.+.... ..+...+...... ......+...+.. ...+.+|||+++.+++
T Consensus 219 ATld~--~~-fa~~F~~apvI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI 292 (1283)
T TIGR01967 219 ATIDP--ER-FSRHFNNAPIIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREI 292 (1283)
T ss_pred CCcCH--HH-HHHHhcCCCEEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHH
Confidence 99964 33 44444433334333221 1233333322211 1122222222222 2447899999999999
Q ss_pred HHHHHHHhcCC---CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC------------
Q 015158 292 DWLTDKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------------ 356 (412)
Q Consensus 292 ~~~~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~------------ 356 (412)
+.+++.|++.+ ..+..+||+++.++|..+++.+ +..+|||+|+++++|+|+|++++||+.+.+
T Consensus 293 ~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~ 370 (1283)
T TIGR01967 293 RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQ 370 (1283)
T ss_pred HHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCcc
Confidence 99999998764 4588999999999999886643 347899999999999999999999998843
Q ss_pred ------CChhhHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 357 ------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 357 ------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
.|.+++.||.||+||.+ +|.||.++++.+...
T Consensus 371 ~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 371 RLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 46789999999999997 999999999876653
No 94
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.1e-30 Score=247.62 Aligned_cols=334 Identities=20% Similarity=0.271 Sum_probs=239.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCC--------ceeEEEEcCCH
Q 015158 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLV--------ECQALVLAPTR 117 (412)
Q Consensus 47 ~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--------~~~~lil~P~~ 117 (412)
+.+-..++. |...+++.|-......+.+ .+.+++||||+|||..+++.+++.+..+.. ..+++|++|.+
T Consensus 297 P~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmK 374 (1674)
T KOG0951|consen 297 PKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMK 374 (1674)
T ss_pred cchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHH
Confidence 333344443 6667999999999998876 689999999999999999999998865432 34799999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC--CCCCCceEEEEeCCchhhc
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS--LRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~--~~~~~~~~iiiDE~h~~~~ 195 (412)
+|++.|...+.+....+|+.|..++|+...... -....+|+++|||++--.-++.. ...+-++++|+||+|.+-+
T Consensus 375 aLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD 451 (1674)
T KOG0951|consen 375 ALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD 451 (1674)
T ss_pred HHHHHHHHHHHhhccccCcEEEEecccccchhh---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc
Confidence 999999999999888899999999998764322 11346899999999855444322 1124578999999996533
Q ss_pred cCcHHHHHHHHHhC-------CCCceEEEEeecCChHHHHHHHHhcC-CCeEEEecCCccccCCceEEEEEeccchh-h-
Q 015158 196 RGFKDQIYDIFQLL-------PPKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFHVNVEKEEW-K- 265 (412)
Q Consensus 196 ~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 265 (412)
. .+..+..+.... ..+++.+++|||+|+- .....+++ ++.-.........+-.+.+.+.-+..... +
T Consensus 452 d-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~ 528 (1674)
T KOG0951|consen 452 D-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKR 528 (1674)
T ss_pred c-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCchHH
Confidence 2 345554443332 3478999999999863 33333332 22222222233334445555554443221 1
Q ss_pred ----H-HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC-------------------------------------CC
Q 015158 266 ----L-ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DH 303 (412)
Q Consensus 266 ----~-~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~-------------------------------------~~ 303 (412)
. ..+..+++.....++|||+.|++++-+.++.+++. .+
T Consensus 529 ~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpy 608 (1674)
T KOG0951|consen 529 FQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPY 608 (1674)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhc
Confidence 1 23344555556689999999999888888877632 35
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc-----------CCCChhhHHHhhhhcccC
Q 015158 304 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD-----------LPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 304 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~ 372 (412)
.+..+|++|++.+|..+++.|.+|+++|+++|..++.|+|+|.-. ||+=+ .+.++.+..||.||+||.
T Consensus 609 gfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpaht-Viikgtqvy~pekg~w~elsp~dv~qmlgragrp 687 (1674)
T KOG0951|consen 609 GFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHT-VIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRP 687 (1674)
T ss_pred cceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcce-EEecCccccCcccCccccCCHHHHHHHHhhcCCC
Confidence 688999999999999999999999999999999999999999544 44332 245789999999999997
Q ss_pred CC--CceEEEEeccCcHHH
Q 015158 373 GR--KGVAINFVTRDDERM 389 (412)
Q Consensus 373 g~--~g~~~~~~~~~~~~~ 389 (412)
+. .|.++++....+...
T Consensus 688 ~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 688 QYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred ccCcCCceeeccCchHhhh
Confidence 64 466776666655443
No 95
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.97 E-value=3.8e-29 Score=248.25 Aligned_cols=314 Identities=20% Similarity=0.211 Sum_probs=215.1
Q ss_pred CChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|++||.+++..+. .|.++|+...+|.|||+.++..+..........+++|||||. ++..+|.+++.++++ ..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--VL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--CC
Confidence 58999999999875 467899999999999988755444322222234579999996 667889999999875 45
Q ss_pred EEEEEEcCcchHHHH---HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCc
Q 015158 137 KVHACVGGTSVREDQ---RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~ 213 (412)
.+..++|........ ......++|+|+||+.+.+... .+...+|++||+||||.+.+.. ......+..+. ..
T Consensus 246 ~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~--Sklskalr~L~-a~ 320 (1033)
T PLN03142 246 RAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNEN--SLLSKTMRLFS-TN 320 (1033)
T ss_pred ceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHH--HHHHHHHHHhh-cC
Confidence 666777765432221 1223568999999999876432 2333468999999999987654 34445555554 34
Q ss_pred eEEEEeecCChHHHHHHHHhcCC--C----------------------------------eEEEecC--CccccCCceEE
Q 015158 214 QVGVFSATMPPEALEITRKFMNK--P----------------------------------VRILVKR--DELTLEGIKQF 255 (412)
Q Consensus 214 ~~i~~SAT~~~~~~~~~~~~~~~--~----------------------------------~~~~~~~--~~~~~~~~~~~ 255 (412)
..+++||||-.+....+..++.. | ..+.... .....+.....
T Consensus 321 ~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~ 400 (1033)
T PLN03142 321 YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKET 400 (1033)
T ss_pred cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeE
Confidence 46899999853222211111100 0 0000000 00000001111
Q ss_pred EEEecc--------------------------------------------------------------chhhHHHHHHHH
Q 015158 256 HVNVEK--------------------------------------------------------------EEWKLETLCDLY 273 (412)
Q Consensus 256 ~~~~~~--------------------------------------------------------------~~~~~~~l~~~~ 273 (412)
.+.+.. ...+...+..++
T Consensus 401 iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL 480 (1033)
T PLN03142 401 ILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLL 480 (1033)
T ss_pred EEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHH
Confidence 111110 012333344444
Q ss_pred Hhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC---CCcEEEEcCCCcCCCCCCCCC
Q 015158 274 ETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG---SSRVLITTDLLARGIDVQQVS 348 (412)
Q Consensus 274 ~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vlv~t~~~~~G~d~~~~~ 348 (412)
... .+.++|||++.......+.++|...++.+..++|+++..+|..+++.|++. ...+|++|.+++.|+|+..++
T Consensus 481 ~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 481 PKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred HHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 433 346999999999999999999999999999999999999999999999863 235788999999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEe
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 382 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 382 (412)
+||+++++|++....|++||+.|.|+...+.++.
T Consensus 561 ~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 561 IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999887654443
No 96
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2e-28 Score=236.15 Aligned_cols=318 Identities=19% Similarity=0.248 Sum_probs=228.1
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|...--.+..|+ +..++||+|||+++.++++.....+ ..+.|++|+..|+.|.++.+..+....|+.
T Consensus 80 g~~-~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLt 153 (896)
T PRK13104 80 GLR-HFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLT 153 (896)
T ss_pred CCC-cchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 555 7888888777776665 8899999999999999999766544 369999999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC-CCCC-----CCceEEEEeCCchhh-ccC------------
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ-SLRP-----DNIRIFVLDEADEML-SRG------------ 197 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~-~~~~-----~~~~~iiiDE~h~~~-~~~------------ 197 (412)
+..+.|+.+....... -.++|+++||..| +.++... .+.. +.+.++|+||+|.++ +..
T Consensus 154 v~~i~gg~~~~~r~~~--y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~~~~ 231 (896)
T PRK13104 154 VGVIYPDMSHKEKQEA--YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGAAED 231 (896)
T ss_pred EEEEeCCCCHHHHHHH--hCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCCCcc
Confidence 9999998776554333 3579999999999 7777654 2322 578999999999854 110
Q ss_pred ---cHHHHHHHHHhCCC---------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLLPP--------------------------------------------------------------- 211 (412)
Q Consensus 198 ---~~~~~~~i~~~~~~--------------------------------------------------------------- 211 (412)
.......+...+..
T Consensus 232 ~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A 311 (896)
T PRK13104 232 SSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAALKA 311 (896)
T ss_pred chHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHHHHH
Confidence 01111111111100
Q ss_pred -------------------------------------------------------------------CceEEEEeecCCh
Q 015158 212 -------------------------------------------------------------------KIQVGVFSATMPP 224 (412)
Q Consensus 212 -------------------------------------------------------------------~~~~i~~SAT~~~ 224 (412)
-.++-|||+|...
T Consensus 312 ~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~t 391 (896)
T PRK13104 312 HAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGTADT 391 (896)
T ss_pred HHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCCChh
Confidence 1244555555543
Q ss_pred HHHHHHHHhcCCCeE-EEecCCccccCCceEEEEEeccchhhHHHHHHHHHh-c-CCCcEEEEEcchhHHHHHHHHHhcC
Q 015158 225 EALEITRKFMNKPVR-ILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMRSR 301 (412)
Q Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~~~~~L~~~ 301 (412)
...+ +...++-.+. +...........-. ........+...+.+.+.. + .+.++||||+|++.++.+++.|.+.
T Consensus 392 e~~E-f~~iY~l~Vv~IPtnkp~~R~d~~d---~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~ 467 (896)
T PRK13104 392 EAYE-FQQIYNLEVVVIPTNRSMIRKDEAD---LVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE 467 (896)
T ss_pred HHHH-HHHHhCCCEEECCCCCCcceecCCC---eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 3222 2223322221 11111111110011 1122233455555444433 3 5579999999999999999999999
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC------------------------------------
Q 015158 302 DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ------------------------------------ 345 (412)
Q Consensus 302 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~------------------------------------ 345 (412)
|+...++|+.+...++..+.+.|+.|. |+|||+++++|+|+.
T Consensus 468 gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 545 (896)
T PRK13104 468 NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVI 545 (896)
T ss_pred CCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999985 999999999999976
Q ss_pred --CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 346 --QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 346 --~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
+--+||....+.|...-.|..||+||-|.+|.+-.|++-.|.-.
T Consensus 546 ~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 546 AAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred HcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 23478888999999999999999999999999999998876643
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=4.2e-28 Score=233.63 Aligned_cols=320 Identities=19% Similarity=0.221 Sum_probs=236.7
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.. |++.|.-..-.+.+|+ +..+.||+|||+++.++++-....+. .+-|++|+..|+.|.++.+..+...+|+
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 3666 8999998887777775 88999999999999998863333332 5779999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcCC------CCCCCceEEEEeCCchhh-ccC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQS------LRPDNIRIFVLDEADEML-SRG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~------~~~~~~~~iiiDE~h~~~-~~~----------- 197 (412)
++..+.|+.+........ .++|+++|+..| +.++.... ...+.+.++|+||++.++ +..
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~ 229 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAE 229 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECCCC
Confidence 999999988766554443 479999999999 76765443 235678899999999854 110
Q ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Q 015158 198 ----FKDQIYDIFQLLP--------------------------------------------------------------- 210 (412)
Q Consensus 198 ----~~~~~~~i~~~~~--------------------------------------------------------------- 210 (412)
....+..+...+.
T Consensus 230 ~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 309 (830)
T PRK12904 230 DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV 309 (830)
T ss_pred cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 1111111111110
Q ss_pred ------------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCC
Q 015158 211 ------------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNK 236 (412)
Q Consensus 211 ------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 236 (412)
--.++.|||+|...... .+...++-
T Consensus 310 ~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~-E~~~iY~l 388 (830)
T PRK12904 310 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAE-EFREIYNL 388 (830)
T ss_pred ECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHH-HHHHHhCC
Confidence 01367888888865443 34444444
Q ss_pred CeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh--cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCH
Q 015158 237 PVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 314 (412)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 314 (412)
.+............ ...-........+...+.+.+.. ..+.++||||+|++.++.+++.|.+.++.+..+|+. .
T Consensus 389 ~vv~IPtnkp~~r~--d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q 464 (830)
T PRK12904 389 DVVVIPTNRPMIRI--DHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--N 464 (830)
T ss_pred CEEEcCCCCCeeee--eCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--h
Confidence 33322111111111 11111222334567777777755 456799999999999999999999999999999995 6
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC--------------------------------------CCEEEEccCC
Q 015158 315 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------------------------------------VSLVINYDLP 356 (412)
Q Consensus 315 ~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~--------------------------------------~~~vi~~~~~ 356 (412)
.+|+..+..|..+...|+|||+++++|+|++- --|||....+
T Consensus 465 ~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerh 544 (830)
T PRK12904 465 HEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERH 544 (830)
T ss_pred HHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccC
Confidence 78999999999999999999999999999873 3478888999
Q ss_pred CChhhHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 357 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
.|...-.|..||+||-|.+|.+-.|++-.|.-.
T Consensus 545 esrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 545 ESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred chHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 999999999999999999999999998876643
No 98
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.5e-28 Score=234.31 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=228.8
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.. |++.|.-+.-.+..|+ +..+.||+|||+++.++++.....+ ..+-+++|+.-|+.|-++.+..+...+|+
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 3666 8999998887777776 8999999999999988888776655 48999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-------CCCCceEEEEeCCchhh-ccC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-------RPDNIRIFVLDEADEML-SRG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-------~~~~~~~iiiDE~h~~~-~~~----------- 197 (412)
.+..+.++.+....... -.++|+++|...|.--+.+... ..+.+.+.|+||++.++ +..
T Consensus 151 ~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~ 228 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAE 228 (796)
T ss_pred eEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCC
Confidence 99999987665544333 4578999998877432222221 23567889999999743 100
Q ss_pred ----cHHHHHHHHHh----------------------------------------CC-----------------------
Q 015158 198 ----FKDQIYDIFQL----------------------------------------LP----------------------- 210 (412)
Q Consensus 198 ----~~~~~~~i~~~----------------------------------------~~----------------------- 210 (412)
....+..+... +.
T Consensus 229 ~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 308 (796)
T PRK12906 229 KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRAN 308 (796)
T ss_pred cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHH
Confidence 00011111100 00
Q ss_pred -----------------------------------------------------------------CCceEEEEeecCChH
Q 015158 211 -----------------------------------------------------------------PKIQVGVFSATMPPE 225 (412)
Q Consensus 211 -----------------------------------------------------------------~~~~~i~~SAT~~~~ 225 (412)
--.++.|||+|...+
T Consensus 309 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e 388 (796)
T PRK12906 309 YIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTE 388 (796)
T ss_pred HHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHH
Confidence 013567777777544
Q ss_pred HHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCC
Q 015158 226 ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDH 303 (412)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~ 303 (412)
.. .+...++-.+............ ...-........+...+.+.+... .+.++||||+|++.++.+++.|.+.++
T Consensus 389 ~~-Ef~~iY~l~vv~IPtnkp~~r~--d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 389 EE-EFREIYNMEVITIPTNRPVIRK--DSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HH-HHHHHhCCCEEEcCCCCCeeee--eCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 33 3344444333221111110000 111111223345666777666443 568999999999999999999999999
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC---CCC-----EEEEccCCCChhhHHHhhhhcccCCCC
Q 015158 304 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRK 375 (412)
Q Consensus 304 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~ 375 (412)
.+..+|+.+...++..+.+.++.|. |+|+|+++++|+|++ .+. |||.+..|.|...+.|+.||+||.|.+
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~ 543 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDP 543 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCC
Confidence 9999999988777777777666555 999999999999995 788 999999999999999999999999999
Q ss_pred ceEEEEeccCcHH
Q 015158 376 GVAINFVTRDDER 388 (412)
Q Consensus 376 g~~~~~~~~~~~~ 388 (412)
|.+..|++..|.-
T Consensus 544 G~s~~~~sleD~l 556 (796)
T PRK12906 544 GSSRFYLSLEDDL 556 (796)
T ss_pred cceEEEEeccchH
Confidence 9999999887653
No 99
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.96 E-value=3.8e-28 Score=227.65 Aligned_cols=294 Identities=18% Similarity=0.247 Sum_probs=200.8
Q ss_pred CChHHHHhhhhhhhc----C-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 61 KPSAIQQRGIVPFCK----G-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.+|++|..|+..+.+ | +.++++|+||+|||.+++. ++..+......+++|+++.+++|+.|....+..+.+. +
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~-~ 242 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPF-G 242 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCC-c
Confidence 499999999988764 3 5699999999999998754 4445554456679999999999999999998887653 3
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC-----CCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ-----SLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP 210 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-----~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~ 210 (412)
-....+.+... ..++.|+++|++++....... .+...+||+||+||||+-.-..+. .++..+.
T Consensus 243 ~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~----~I~dYFd 310 (875)
T COG4096 243 TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWS----SILDYFD 310 (875)
T ss_pred cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhH----HHHHHHH
Confidence 33333332221 124789999999998877654 345677999999999985433333 4444432
Q ss_pred CCceEEEEeecCChHHHHHHHHhc-CCCeEEEecCCc-----cccCCceEEE----------------------------
Q 015158 211 PKIQVGVFSATMPPEALEITRKFM-NKPVRILVKRDE-----LTLEGIKQFH---------------------------- 256 (412)
Q Consensus 211 ~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~---------------------------- 256 (412)
...+++||||..........++ +.|...+...+. ..++.+....
T Consensus 311 --A~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd 388 (875)
T COG4096 311 --AATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDD 388 (875)
T ss_pred --HHHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCccc
Confidence 2246779999876555555666 555544322111 0011111100
Q ss_pred ------------EEeccchhhHHHHHHHHHhc--C--CCcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHH
Q 015158 257 ------------VNVEKEEWKLETLCDLYETL--A--ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQN 315 (412)
Q Consensus 257 ------------~~~~~~~~~~~~l~~~~~~~--~--~~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~ 315 (412)
......+.....+.+.++.. . .+|+||||.+..||+.+...|.+. +.-+..+.++- ..
T Consensus 389 ~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~-~~ 467 (875)
T COG4096 389 QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA-EQ 467 (875)
T ss_pred ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc-hh
Confidence 11111122344555666652 1 479999999999999999999875 23456666653 22
Q ss_pred HHHHHHHHHhc-CC-CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC
Q 015158 316 TRDIIMREFRS-GS-SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 316 ~r~~~~~~f~~-g~-~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
-...+..|.. .+ ..|.++++++.+|+|+|.|.+++++....|...|.||+||+-|.
T Consensus 468 -~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 468 -AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred -hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 3344555554 44 35778889999999999999999999999999999999999995
No 100
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=226.37 Aligned_cols=334 Identities=17% Similarity=0.217 Sum_probs=234.6
Q ss_pred HHHHHCCCCCChHHHHhhhhh--hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 52 RGIYAYGFEKPSAIQQRGIVP--FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 52 ~~l~~~~~~~l~~~Q~~a~~~--~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
-.....|...++.||.+.+.. ++++++.+...||+.|||+++.+.++..+...+ ..++++.|..+.+.+-...+..
T Consensus 214 ~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r--r~~llilp~vsiv~Ek~~~l~~ 291 (1008)
T KOG0950|consen 214 LYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR--RNVLLILPYVSIVQEKISALSP 291 (1008)
T ss_pred HHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh--hceeEecceeehhHHHHhhhhh
Confidence 344456888899999988765 778899999999999999999888887765432 4699999999999988888999
Q ss_pred hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc--CCCCCCCceEEEEeCCchhhccCcHHHHHHHHH
Q 015158 130 LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR--QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ 207 (412)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~ 207 (412)
+....|+.+..+.|........ ....+.|+|.|+-..+... ..-....+++||+||.|.+.+.+....+..++.
T Consensus 292 ~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~ 367 (1008)
T KOG0950|consen 292 FSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLA 367 (1008)
T ss_pred hccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHH
Confidence 9888899999888776654432 2357999999986544322 122346789999999999998886666655544
Q ss_pred h-----CCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCC--ceEEEEEeccch---------------hh
Q 015158 208 L-----LPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEG--IKQFHVNVEKEE---------------WK 265 (412)
Q Consensus 208 ~-----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~ 265 (412)
. .....++|+||||+++. ..++.++...++....+...-.+. +....+...... ..
T Consensus 368 k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 368 KILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred HHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 3 23456799999999763 444444443222221111110000 111111110000 00
Q ss_pred HHHHHHHHHhc-CC-CcEEEEEcchhHHHHHHHHHhcC--------------------------------------CCee
Q 015158 266 LETLCDLYETL-AI-TQSVIFVNTRRKVDWLTDKMRSR--------------------------------------DHTV 305 (412)
Q Consensus 266 ~~~l~~~~~~~-~~-~k~lif~~~~~~~~~~~~~L~~~--------------------------------------~~~~ 305 (412)
.+.+..+..+. .. .++||||+++..|+.++..+... ...+
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~Gv 525 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGV 525 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccc
Confidence 01111121111 11 35999999999999887555321 2458
Q ss_pred EEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc----CCCChhhHHHhhhhcccCCCC--ceEE
Q 015158 306 SATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD----LPTQPENYLHRIGRSGRFGRK--GVAI 379 (412)
Q Consensus 306 ~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~----~~~s~~~~~Q~~GR~~R~g~~--g~~~ 379 (412)
.++|++++.++|+.+...|++|...|+++|+++..|+|+|..++++-.. ...+..+|.||+||+||+|.+ |.++
T Consensus 526 AyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~Gdsi 605 (1008)
T KOG0950|consen 526 AYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSI 605 (1008)
T ss_pred eecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceE
Confidence 8999999999999999999999999999999999999999777776332 345788999999999999854 8899
Q ss_pred EEeccCcHHHHHHH
Q 015158 380 NFVTRDDERMLFDI 393 (412)
Q Consensus 380 ~~~~~~~~~~~~~~ 393 (412)
+++.+.+.+....+
T Consensus 606 LI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 606 LIIKSSEKKRVREL 619 (1008)
T ss_pred EEeeccchhHHHHH
Confidence 99999988765533
No 101
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=6.7e-27 Score=226.72 Aligned_cols=311 Identities=17% Similarity=0.257 Sum_probs=226.8
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~ 140 (412)
-+....+.+..+.+++.++|.++||||||+..-..++..-. ..++++.+.-|++--+...++.+.+ +....|-.|.+
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 46677788888889999999999999999887666665543 2345788899999777777766655 33333444444
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh-hccCcH-HHHHHHHHhCCCCceEEEE
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM-LSRGFK-DQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~ 218 (412)
..-..+ .......|-++|.+.|++.+....+ ++.+++||+||+|+= ++.++. ..+..+....++..++|.|
T Consensus 129 ~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 129 SIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 332221 1234568999999999999887654 678999999999982 233333 3445556667778999999
Q ss_pred eecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchh-hHHHHHHHHHh---cCCCcEEEEEcchhHHHHH
Q 015158 219 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEW-KLETLCDLYET---LAITQSVIFVNTRRKVDWL 294 (412)
Q Consensus 219 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~~~k~lif~~~~~~~~~~ 294 (412)
|||+.. +.+..++++...+.+.... ..++..|......+. ....+...+.. ...|.+|||.+..++.+..
T Consensus 202 SATld~---~rfs~~f~~apvi~i~GR~---fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 202 SATLDA---ERFSAYFGNAPVIEIEGRT---YPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ecccCH---HHHHHHcCCCCEEEecCCc---cceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 999975 4555666644434433322 123333323322222 33334333333 3458999999999999999
Q ss_pred HHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC---------------
Q 015158 295 TDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL--------------- 355 (412)
Q Consensus 295 ~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~--------------- 355 (412)
++.|.+ ....+..+||.++.+++.++++--..|+.+|+++|++.++++.+++++.||.-+.
T Consensus 276 ~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L 355 (845)
T COG1643 276 AEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRL 355 (845)
T ss_pred HHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceee
Confidence 999997 3578999999999999999888777777889999999999999999999997654
Q ss_pred ---CCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 356 ---PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 356 ---~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|.|.++..||.||+||. .+|.||-+++..+..
T Consensus 356 ~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 356 ETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred eEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 46888999999999999 589999999985554
No 102
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.9e-26 Score=218.79 Aligned_cols=147 Identities=23% Similarity=0.327 Sum_probs=123.8
Q ss_pred cCCCCHHHHHHHH-----HCCCCCC---hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 43 AMGLQENLLRGIY-----AYGFEKP---SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 43 ~~~l~~~~~~~l~-----~~~~~~l---~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
.+++.....+.+. ..||..| +|+|.++++.+..+++.+..++||+|||++|+++++..+..+. .++||+
T Consensus 66 afal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IVT 142 (970)
T PRK12899 66 AYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLVT 142 (970)
T ss_pred HhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEEe
Confidence 4566677766665 4688877 9999999999999999999999999999999999997765442 488999
Q ss_pred CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcCCCCCC-------CceEEE
Q 015158 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQSLRPD-------NIRIFV 186 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~~~~~~-------~~~~ii 186 (412)
|++.|+.|..+.+..+....++++..+.|+.......... .++|+|+||..| +.++....+..+ .+.++|
T Consensus 143 pTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~I 220 (970)
T PRK12899 143 VNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAI 220 (970)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEE
Confidence 9999999999999999988899999999998877665443 589999999999 888877655443 568999
Q ss_pred EeCCchhh
Q 015158 187 LDEADEML 194 (412)
Q Consensus 187 iDE~h~~~ 194 (412)
+|||+.++
T Consensus 221 IDEADsmL 228 (970)
T PRK12899 221 IDEVDSIL 228 (970)
T ss_pred Eechhhhh
Confidence 99999864
No 103
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.95 E-value=2.8e-26 Score=210.37 Aligned_cols=310 Identities=15% Similarity=0.234 Sum_probs=222.2
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~ 140 (412)
.+.+-.+.+..+.+++.++|.|+||||||+..-..++..-... .+++.+.-|++.-+...+++... .....|-.|..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~--~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS--SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc--CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 5667778888899999999999999999988766665553322 23488889998766666655443 33333444443
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccC-cHHHHHHHHHhCCCCceEEEE
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRG-FKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~-~~~~~~~i~~~~~~~~~~i~~ 218 (412)
...-. +.......|.++|.+.|++....... ++.+++||+||||+=. ..+ ....+++++.. ++..++|.+
T Consensus 130 ~IRFe------d~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIim 201 (674)
T KOG0922|consen 130 TIRFE------DSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLIIM 201 (674)
T ss_pred EEEec------ccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEEE
Confidence 33211 11223468999999999998876554 5789999999999722 111 22333344333 346889999
Q ss_pred eecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHH---hcCCCcEEEEEcchhHHHHHH
Q 015158 219 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE---TLAITQSVIFVNTRRKVDWLT 295 (412)
Q Consensus 219 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~k~lif~~~~~~~~~~~ 295 (412)
|||+.. +.+..+++....+.+.... ..++..+...+..++....+...++ ..+.+-+|||...+++++.++
T Consensus 202 SATlda---~kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 202 SATLDA---EKFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred eeeecH---HHHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 999964 4455566654444433322 2345555555554544444444443 345588999999999999999
Q ss_pred HHHhcC----CC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC------------
Q 015158 296 DKMRSR----DH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------ 355 (412)
Q Consensus 296 ~~L~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~------------ 355 (412)
+.|.+. +. -+..+||.++.+++.++++.-..|..+|+++|++.++.+.++++..||.-|.
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~ 355 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGL 355 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCc
Confidence 999875 11 2567899999999999999888899999999999999999999999996553
Q ss_pred ------CCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 356 ------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 356 ------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|.|.++..||.||+||.| +|.||-++++.+..
T Consensus 356 ~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 356 DSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred cceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 468899999999999995 79999999988764
No 104
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.95 E-value=6.8e-26 Score=221.35 Aligned_cols=321 Identities=16% Similarity=0.156 Sum_probs=192.2
Q ss_pred ChHHHHhhhhhhhc----------CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 62 PSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
++++|.+|+..+.. .+.++++++||||||.+++..+...+ .....+++|+++|+..|..|+.+.+..+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 79999999988642 25799999999999998876665444 33345789999999999999999999875
Q ss_pred cccCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcC--CCCCC-CceEEEEeCCchhhccCcHHHHHHHH-
Q 015158 132 DYLGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQ--SLRPD-NIRIFVLDEADEMLSRGFKDQIYDIF- 206 (412)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~--~~~~~-~~~~iiiDE~h~~~~~~~~~~~~~i~- 206 (412)
... + .+..+........ .....|+|+|.++|.+.+... ..... .-.+||+||||+..... +...+
T Consensus 318 ~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~~~~l~ 387 (667)
T TIGR00348 318 KDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----LAKNLK 387 (667)
T ss_pred CCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----HHHHHH
Confidence 310 1 1111122222222 234689999999998644321 11111 11389999999854332 33333
Q ss_pred HhCCCCceEEEEeecCChHHHHHHHHhc----CCCeEEEecCCccccCCceEEEEE-------ecc--------------
Q 015158 207 QLLPPKIQVGVFSATMPPEALEITRKFM----NKPVRILVKRDELTLEGIKQFHVN-------VEK-------------- 261 (412)
Q Consensus 207 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-------------- 261 (412)
..++ +...+|+||||...........+ +.+...+.........-...+.+. ++.
T Consensus 388 ~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 388 KALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred hhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 3444 57799999999632111111111 222222111111110000000000 000
Q ss_pred ----ch--------------------hhHHHHH-----HHHHhc--CCCcEEEEEcchhHHHHHHHHHhcC-----CCee
Q 015158 262 ----EE--------------------WKLETLC-----DLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-----DHTV 305 (412)
Q Consensus 262 ----~~--------------------~~~~~l~-----~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~-----~~~~ 305 (412)
.+ .....+. .+.+.. ..+|++|||.++.+|..+++.|.+. +...
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 00 0000111 111111 2379999999999999999888654 2345
Q ss_pred EEecCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHH
Q 015158 306 SATHGDMDQN---------------------TRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 363 (412)
Q Consensus 306 ~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~ 363 (412)
.++++..+.. ....++++|++ ++++++|+++++.+|+|.|.++++++..+..+ ..++
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~Ll 625 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLL 625 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHH
Confidence 5565543322 22468888976 68899999999999999999999997766554 5689
Q ss_pred HhhhhcccC-CCC-ceEEEEeccCcHHHHHHHHH
Q 015158 364 HRIGRSGRF-GRK-GVAINFVTRDDERMLFDIQK 395 (412)
Q Consensus 364 Q~~GR~~R~-g~~-g~~~~~~~~~~~~~~~~~~~ 395 (412)
|++||+.|. ++. ..++++......+.+..-.+
T Consensus 626 Qai~R~nR~~~~~K~~g~IvDy~g~~~~l~~Al~ 659 (667)
T TIGR00348 626 QAIARTNRIDGKDKTFGLIVDYRGLEKSLIDALS 659 (667)
T ss_pred HHHHHhccccCCCCCCEEEEECcChHHHHHHHHH
Confidence 999999994 332 23455555555554444333
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.1e-26 Score=218.88 Aligned_cols=317 Identities=18% Similarity=0.205 Sum_probs=226.1
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|.-.--.+.+|+ +..++||.|||+++.++++.....+ ..+.||+|+..|+.+-++.+..++...|++
T Consensus 80 gm~-~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g---~~VhIvT~ndyLA~RD~e~m~~l~~~lGls 153 (908)
T PRK13107 80 EMR-HFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTG---KGVHVITVNDYLARRDAENNRPLFEFLGLT 153 (908)
T ss_pred CCC-cCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 555 7888887776666665 8899999999999999988666554 359999999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC-CCC-----CCCceEEEEeCCchhhccC-------------
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ-SLR-----PDNIRIFVLDEADEMLSRG------------- 197 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~-~~~-----~~~~~~iiiDE~h~~~~~~------------- 197 (412)
+.++.++.+... ....-.++|+++|+..| +.++... ... .+.+.++|+||++.++-..
T Consensus 154 v~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~~~ 231 (908)
T PRK13107 154 VGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAED 231 (908)
T ss_pred EEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCCcc
Confidence 999988876533 33334679999999999 6666554 222 2678899999999754210
Q ss_pred ---cHHHHHHHHHhCC----------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLLP---------------------------------------------------------------- 210 (412)
Q Consensus 198 ---~~~~~~~i~~~~~---------------------------------------------------------------- 210 (412)
....+..+...+.
T Consensus 232 ~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~ 311 (908)
T PRK13107 232 SSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHHVN 311 (908)
T ss_pred chHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHHHH
Confidence 0000110000000
Q ss_pred -----------------------------------------------------------------------CCceEEEEe
Q 015158 211 -----------------------------------------------------------------------PKIQVGVFS 219 (412)
Q Consensus 211 -----------------------------------------------------------------------~~~~~i~~S 219 (412)
--.++.|||
T Consensus 312 ~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMT 391 (908)
T PRK13107 312 AALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAGMT 391 (908)
T ss_pred HHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhccc
Confidence 012455666
Q ss_pred ecCChHHHHHHHHhcCCCeE-EEecCCccccCCceEEEEEeccchhhHHHHHHHHHh-c-CCCcEEEEEcchhHHHHHHH
Q 015158 220 ATMPPEALEITRKFMNKPVR-ILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTD 296 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~~~~ 296 (412)
+|......+ +...++-.+. +......... .....+ ......+...+.+-+.. + .+.++||||.|++.++.+++
T Consensus 392 GTa~te~~E-f~~iY~l~Vv~IPTnkp~~R~-d~~d~i--y~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~ 467 (908)
T PRK13107 392 GTADTEAFE-FQHIYGLDTVVVPTNRPMVRK-DMADLV--YLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLAR 467 (908)
T ss_pred CCChHHHHH-HHHHhCCCEEECCCCCCccce-eCCCcE--EeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHH
Confidence 665443333 2223332222 2211111111 111111 12223344444443333 2 45799999999999999999
Q ss_pred HHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC-------------------------------
Q 015158 297 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ------------------------------- 345 (412)
Q Consensus 297 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~------------------------------- 345 (412)
.|.+.++.+..+|+.....++..+.+.|+.|. |+|||+++++|+|+.
T Consensus 468 ~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (908)
T PRK13107 468 LMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRH 545 (908)
T ss_pred HHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhH
Confidence 99999999999999999999999999999988 999999999999987
Q ss_pred ------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 346 ------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 346 ------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
+--+||....+.|...-.|..||+||-|.+|.+..|++-.|.-
T Consensus 546 ~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~L 594 (908)
T PRK13107 546 DEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDSL 594 (908)
T ss_pred HHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcHH
Confidence 2347888999999999999999999999999999999887763
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=2.4e-26 Score=188.84 Aligned_cols=163 Identities=28% Similarity=0.485 Sum_probs=139.0
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (412)
+|+|.++++.+.+++++++.+|||+|||.+++.+++..+... ...++++++|+++|++|..+.+..+....+..+..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 589999999999999999999999999999999999888766 4458999999999999999999999877778888888
Q ss_pred cCcchH-HHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC--CCceEEEEe
Q 015158 143 GGTSVR-EDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP--PKIQVGVFS 219 (412)
Q Consensus 143 ~~~~~~-~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~S 219 (412)
++.... ........+++|+|+||++|...+.....+..++++||+||+|.+..+.+...+..+...+. .+.+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 887755 33444456789999999999999987655666799999999999998877888888887763 368999999
Q ss_pred ecCChHH
Q 015158 220 ATMPPEA 226 (412)
Q Consensus 220 AT~~~~~ 226 (412)
||++.+.
T Consensus 160 AT~~~~~ 166 (169)
T PF00270_consen 160 ATLPSNV 166 (169)
T ss_dssp SSSTHHH
T ss_pred eCCChhH
Confidence 9998544
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.4e-24 Score=207.10 Aligned_cols=279 Identities=22% Similarity=0.323 Sum_probs=200.3
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC-c
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG-V 136 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~ 136 (412)
|+ +|+..|+-....+..|+++-+.||||.|||.-.++..+.... .++++++++||..|+.|..+.+.++....+ .
T Consensus 80 G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~---kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAK---KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHh---cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 66 599999999999999999999999999999655443333322 336999999999999999999999876554 3
Q ss_pred EEEE-EEcCcchHH----HHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----------cHH
Q 015158 137 KVHA-CVGGTSVRE----DQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----------FKD 200 (412)
Q Consensus 137 ~~~~-~~~~~~~~~----~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----------~~~ 200 (412)
.+.. +|+.-+... ..++..++++|+|+|.+.|...+.. +..-+|++|++|+++.++-.+ |..
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~e 233 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSE 233 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHHHcCCCH
Confidence 3333 555533332 2444567899999999888776653 222478999999999865322 110
Q ss_pred -----------------------HHHHHHHh--------CCCCceEEEEeecCChH--HHHHHHHhcCCCeEEEecCCcc
Q 015158 201 -----------------------QIYDIFQL--------LPPKIQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDEL 247 (412)
Q Consensus 201 -----------------------~~~~i~~~--------~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~ 247 (412)
.+.++... -.+...+++.|||..+. -...+..+++..+ .....
T Consensus 234 E~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev----G~~~~ 309 (1187)
T COG1110 234 EVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV----GSGGE 309 (1187)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc----Cccch
Confidence 11111110 11346789999997542 3345555655332 33333
Q ss_pred ccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcc---hhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH
Q 015158 248 TLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNT---RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF 324 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 324 (412)
...++...+... .....+.++++.... .+|||++. ++.+++++++|+.+|+++..+|+. ..+.++.|
T Consensus 310 ~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F 379 (1187)
T COG1110 310 GLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDF 379 (1187)
T ss_pred hhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhh
Confidence 344555555444 455666777777654 68999999 999999999999999999999984 37789999
Q ss_pred hcCCCcEEEEcC----CCcCCCCCCC-CCEEEEccCC
Q 015158 325 RSGSSRVLITTD----LLARGIDVQQ-VSLVINYDLP 356 (412)
Q Consensus 325 ~~g~~~vlv~t~----~~~~G~d~~~-~~~vi~~~~~ 356 (412)
..|++++||++. .+.+|+|+|. ++.+|+++.|
T Consensus 380 ~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 380 EEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999999999865 7889999994 8888888876
No 108
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=5.2e-25 Score=203.65 Aligned_cols=316 Identities=20% Similarity=0.205 Sum_probs=221.4
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.+++||.+.++++.+ |-++|+...+|-|||+..+..+. .+.. ....+..||+||...|.. |.+++.+|++ +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~-yl~~~~~~~GPfLVi~P~StL~N-W~~Ef~rf~P--~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLG-YLKGRKGIPGPFLVIAPKSTLDN-WMNEFKRFTP--S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHH-HHHHhcCCCCCeEEEeeHhhHHH-HHHHHHHhCC--C
Confidence 499999999999774 56899999999999977543333 3322 223456999999877655 8899999987 7
Q ss_pred cEEEEEEcCcchHHH--HH-HhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCC
Q 015158 136 VKVHACVGGTSVRED--QR-ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPK 212 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~-~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~ 212 (412)
+++..++|+...... .+ ...+..+|+|+||++..+.- .-+..-+|.++||||+|++.+.. ..+.+++..+..
T Consensus 243 l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~~- 317 (971)
T KOG0385|consen 243 LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFKT- 317 (971)
T ss_pred cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcchh--hHHHHHHHHhcc-
Confidence 889999998754332 12 23457899999999987642 22333478999999999998775 555566666653
Q ss_pred ceEEEEeecCChHHHHHHHHhcC------------------------------------------------------CC-
Q 015158 213 IQVGVFSATMPPEALEITRKFMN------------------------------------------------------KP- 237 (412)
Q Consensus 213 ~~~i~~SAT~~~~~~~~~~~~~~------------------------------------------------------~~- 237 (412)
...+++|+||-.+-...+..+++ +.
T Consensus 318 ~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE 397 (971)
T KOG0385|consen 318 DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKE 397 (971)
T ss_pred cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcce
Confidence 34689999985211111111100 00
Q ss_pred eEEEecCCc--------------------c-------------ccCCceEEEEEe--------------ccchhhHHHHH
Q 015158 238 VRILVKRDE--------------------L-------------TLEGIKQFHVNV--------------EKEEWKLETLC 270 (412)
Q Consensus 238 ~~~~~~~~~--------------------~-------------~~~~~~~~~~~~--------------~~~~~~~~~l~ 270 (412)
+.+...... . -+....+.+... .....+...|.
T Consensus 398 ~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLD 477 (971)
T KOG0385|consen 398 LIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLD 477 (971)
T ss_pred eeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHH
Confidence 000000000 0 000001111000 00123556666
Q ss_pred HHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEcCCCcCCCCCC
Q 015158 271 DLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGIDVQ 345 (412)
Q Consensus 271 ~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~t~~~~~G~d~~ 345 (412)
.++... .+.++|||.+-....+-+.++.--+++....+.|.++.++|...++.|.... .-++++|.+.+.|+|+.
T Consensus 478 kLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~ 557 (971)
T KOG0385|consen 478 KLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT 557 (971)
T ss_pred HHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccc
Confidence 666654 4579999999999999999999889999999999999999999999998853 34678999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccCCCCceEE--EEeccC
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI--NFVTRD 385 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 385 (412)
.+++||+++..|++..=.|+..|++|.|+...+. -+++..
T Consensus 558 aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 558 AADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999876544 455554
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.94 E-value=2e-25 Score=220.34 Aligned_cols=322 Identities=17% Similarity=0.210 Sum_probs=211.1
Q ss_pred CChHHHHhhhhhhhcC---c-cEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 61 KPSAIQQRGIVPFCKG---L-DVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~---~-~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
..+++|..++..+... . .+++.+|||+|||.+.+.++...+.. .....+++++.|++++.+++.+.++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3589999999998864 4 67899999999999998888877766 34567999999999999999999988654433
Q ss_pred cEEEEEEcCcchHHHHHH--------------hcCCCcEEEeChHHHHHHHHc-CCCC-C--CCceEEEEeCCchhhccC
Q 015158 136 VKVHACVGGTSVREDQRI--------------LSSGVHVVVGTPGRVFDMLRR-QSLR-P--DNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~--------------~~~~~~iii~T~~~l~~~~~~-~~~~-~--~~~~~iiiDE~h~~~~~~ 197 (412)
......++.......... ...-..+.++|+......... .... . -..+.+|+||+|.+....
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 322212333221111000 000122334444443332111 1111 0 123689999999877663
Q ss_pred cHHHHHHHHH-hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc---cccCCceEE-EEEeccchhhHHHHHHH
Q 015158 198 FKDQIYDIFQ-LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE---LTLEGIKQF-HVNVEKEEWKLETLCDL 272 (412)
Q Consensus 198 ~~~~~~~i~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~l~~~ 272 (412)
....+..++. ....+.++++||||+|+...+.+...+.....+...... .....+... ...... ..........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED-GPQEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhh-hhhHhhhhcc
Confidence 2333333333 333478899999999998888888777665544433220 000111110 000000 0000111111
Q ss_pred HHh-cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCCCcCCCCCCCC
Q 015158 273 YET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 273 ~~~-~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
... ..+++++|.||++..|.++++.|+..+..+..+||.+...+|.+.++.+. .++..|+|+|++++.|+|+. .
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-f 512 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-F 512 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-c
Confidence 122 24479999999999999999999998878999999999999998888655 46788999999999999985 6
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCC--CCceEEEEeccCc
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFG--RKGVAINFVTRDD 386 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~ 386 (412)
+.+| .-+.....++||+||++|.| ..|.++++.....
T Consensus 513 d~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 513 DVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred Ceee--ecCCCHHHHHHHHHHHhhcccccCCceeEeecccC
Confidence 7665 34466899999999999999 5677777776543
No 110
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1.1e-25 Score=198.89 Aligned_cols=312 Identities=16% Similarity=0.160 Sum_probs=215.9
Q ss_pred CCCCChHHHHhhhhhhhcC---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 58 GFEKPSAIQQRGIVPFCKG---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
+-..++|||++++.....+ ++.+|+.|||+|||++.+-+++. ..+++|++|.+...++||..++..|+..-
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecccEEEEecCccCHHHHHHHHHhhcccC
Confidence 5557999999999998875 68899999999999887544432 23479999999999999999999998777
Q ss_pred CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC--------CCCCCCceEEEEeCCchhhccCcHHHHHHHH
Q 015158 135 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ--------SLRPDNIRIFVLDEADEMLSRGFKDQIYDIF 206 (412)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~--------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~ 206 (412)
+..+..++.+.+. .+..++.|+|+||.++.+--.+. .+..+.|+++++||+|-+....|++.+.-+.
T Consensus 373 d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~ 447 (776)
T KOG1123|consen 373 DDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQ 447 (776)
T ss_pred ccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHH
Confidence 7788888876552 24467899999998875432211 1234679999999999988887887777777
Q ss_pred HhCCCCceEEEEeecCChHHHHH--HHHhcCCCeEEEecCCccc----cCCceEEEEEecc-------------------
Q 015158 207 QLLPPKIQVGVFSATMPPEALEI--TRKFMNKPVRILVKRDELT----LEGIKQFHVNVEK------------------- 261 (412)
Q Consensus 207 ~~~~~~~~~i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~------------------- 261 (412)
.++ .+++|||+-.+.... +..+.+ |..+.....+.. ...+....++++.
T Consensus 448 aHc-----KLGLTATLvREDdKI~DLNFLIG-PKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lL 521 (776)
T KOG1123|consen 448 AHC-----KLGLTATLVREDDKITDLNFLIG-PKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLL 521 (776)
T ss_pred HHh-----hccceeEEeeccccccccceeec-chhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhhee
Confidence 766 599999985432211 111111 100000000000 0011111111111
Q ss_pred ---chhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEc
Q 015158 262 ---EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITT 335 (412)
Q Consensus 262 ---~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t 335 (412)
...+...-.-+++.+ +++|+|||..+.-....++-.|. -.+++|.+++.+|.+|++.|+. ..++.++.+
T Consensus 522 yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~-----KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS 596 (776)
T KOG1123|consen 522 YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQNERMKILQNFQTNPKVNTIFLS 596 (776)
T ss_pred eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC-----CceEECCCchhHHHHHHHhcccCCccceEEEe
Confidence 122333333333333 56899999998877777776664 3478999999999999999986 478899999
Q ss_pred CCCcCCCCCCCCCEEEEccC-CCChhhHHHhhhhcccCCC---C---ceEEEEeccCcHHHHH
Q 015158 336 DLLARGIDVQQVSLVINYDL-PTQPENYLHRIGRSGRFGR---K---GVAINFVTRDDERMLF 391 (412)
Q Consensus 336 ~~~~~G~d~~~~~~vi~~~~-~~s~~~~~Q~~GR~~R~g~---~---g~~~~~~~~~~~~~~~ 391 (412)
.+..+.+|+|.++++|..+. .-|..+-.||.||..|+.+ + .--|.+++.+..++.+
T Consensus 597 KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99999999999999998765 4578899999999999632 2 2345555666555543
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=197.38 Aligned_cols=326 Identities=15% Similarity=0.206 Sum_probs=226.1
Q ss_pred CCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHH-HHhhcccCcE
Q 015158 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVM-RALGDYLGVK 137 (412)
Q Consensus 59 ~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~-~~~~~~~~~~ 137 (412)
....+++-.+.+.++..++-++|.+.||||||......+...=.. ..+.++-+..|++.-+...+... .+++..+|-.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 334678888889999999999999999999998876655544222 23445778889887666554433 3343333333
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccC-cHHHHHHHHHhCCCCceE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRG-FKDQIYDIFQLLPPKIQV 215 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~-~~~~~~~i~~~~~~~~~~ 215 (412)
|..... ..++.....-+-++|.++|++.+.... ++..+++||+||||+=. ..+ ....+..| ...++..++
T Consensus 342 VGYsIR------FEdcTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDI-ar~RpdLKl 413 (902)
T KOG0923|consen 342 VGYSIR------FEDCTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDI-ARFRPDLKL 413 (902)
T ss_pred cceEEE------eccccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHH-HhhCCcceE
Confidence 322211 111223445788999999999887543 46789999999999722 111 12222333 334578899
Q ss_pred EEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc---CCCcEEEEEcchhHHH
Q 015158 216 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL---AITQSVIFVNTRRKVD 292 (412)
Q Consensus 216 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~k~lif~~~~~~~~ 292 (412)
+..|||+.. +-+..++.....+.+.... ..+..++...+..++....+..+++-+ +.+.+|||....++.+
T Consensus 414 lIsSAT~DA---ekFS~fFDdapIF~iPGRR---yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMDA---EKFSAFFDDAPIFRIPGRR---YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccCH---HHHHHhccCCcEEeccCcc---cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 999999964 4455566555444443322 234555555555454445555555544 4478999999999988
Q ss_pred HHHHHHhcC---------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC--------
Q 015158 293 WLTDKMRSR---------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-------- 355 (412)
Q Consensus 293 ~~~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~-------- 355 (412)
.+.+.|.++ .+-+..+|+.++...+.+|++---.|-.+|+++|+++++.+.++++..||.-+.
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 888777653 356788999999999999999888889999999999999999999999995442
Q ss_pred ----------CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccc
Q 015158 356 ----------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 402 (412)
Q Consensus 356 ----------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
|.|.+...||.||+||.| +|+|+-+++.....+ .++.....+++
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~aY~~--eLE~~t~PEIq 621 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWAYEH--ELEEMTVPEIQ 621 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhhhhh--hhccCCCccee
Confidence 568889999999999997 799999999776543 34433333333
No 112
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.3e-23 Score=195.40 Aligned_cols=320 Identities=18% Similarity=0.171 Sum_probs=218.9
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.+||++.+..+.+ +...|+...+|-|||...+..+......++-.+++|||||. .+..||.++|..|+. ..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p--~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWP--PF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCc--ce
Confidence 478999999998764 56689999999999965543333322222334689999995 788999999999876 45
Q ss_pred EEEEEEcCcchH---------H----HHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHH
Q 015158 137 KVHACVGGTSVR---------E----DQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 137 ~~~~~~~~~~~~---------~----~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
.+..+++..... . ..........|+++|++.|.-. ...+....|+++|+||.|.+-+.+ ..+.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~is 357 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKIS 357 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHHH
Confidence 677777655421 1 1112234457999999987532 234445678999999999998876 5555
Q ss_pred HHHHhCCCCceEEEEeecCChHHHHHHHHhc------------------CCCeEEEecCC--------------------
Q 015158 204 DIFQLLPPKIQVGVFSATMPPEALEITRKFM------------------NKPVRILVKRD-------------------- 245 (412)
Q Consensus 204 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~------------------~~~~~~~~~~~-------------------- 245 (412)
..+..++ ..+.|.+|+||-.+-...+..++ ..|+..-....
T Consensus 358 lackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI 436 (923)
T KOG0387|consen 358 LACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLI 436 (923)
T ss_pred HHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 5555565 44578899998532111111111 00000000000
Q ss_pred -------------ccccCCceEEEE-------------------------------------------------------
Q 015158 246 -------------ELTLEGIKQFHV------------------------------------------------------- 257 (412)
Q Consensus 246 -------------~~~~~~~~~~~~------------------------------------------------------- 257 (412)
....+.-...++
T Consensus 437 ~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~ 516 (923)
T KOG0387|consen 437 SPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE 516 (923)
T ss_pred HHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCccccc
Confidence 000000000000
Q ss_pred -------EeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHh-cCCCeeEEecCCCCHHHHHHHHHHHhcC
Q 015158 258 -------NVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMR-SRDHTVSATHGDMDQNTRDIIMREFRSG 327 (412)
Q Consensus 258 -------~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~-~~~~~~~~~~~~~~~~~r~~~~~~f~~g 327 (412)
-......+...+..+++.. .+.++|+|.+++.-...+-..|. ..++.+..+.|.++...|..++++|+++
T Consensus 517 ~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~ 596 (923)
T KOG0387|consen 517 KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNED 596 (923)
T ss_pred ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCC
Confidence 0001123566677776664 44699999999999999999998 5899999999999999999999999987
Q ss_pred CC-c-EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCce--EEEEeccCcHH
Q 015158 328 SS-R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRDDER 388 (412)
Q Consensus 328 ~~-~-vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~~ 388 (412)
+. . +|++|.+.+-|+|+.+++.||++++.|+|..=.|+.-|+-|.|+... +|-+++...-+
T Consensus 597 ~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 597 ESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred CceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 54 3 56688899999999999999999999999999999999999998754 55566665433
No 113
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=4.8e-24 Score=194.81 Aligned_cols=310 Identities=16% Similarity=0.207 Sum_probs=213.9
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~ 140 (412)
.-.++.+.+..+..++-++|+++||||||......++..=.. .++-+-+..|++.-+...++.+.. +....|..|..
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~--~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYA--DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccc--cCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 456777788888889999999999999998876655544222 123466667888877777666554 33333333332
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...- .........|-++|.+.|++...... .+.++++||+||||+=. +.+..-.+.+....-+.+.++|.+|
T Consensus 435 sIRF------EdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 435 SIRF------EDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred EEEe------eecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 2211 11122345788999999987665433 35689999999999833 2221222222222334588999999
Q ss_pred ecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc---CCCcEEEEEcchhHHHHHHH
Q 015158 220 ATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL---AITQSVIFVNTRRKVDWLTD 296 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~k~lif~~~~~~~~~~~~ 296 (412)
||+.. +.+..+++....+.+.... ..+...+...+..++....+...+.-+ ..+.+|||....+.++..+.
T Consensus 508 ATm~a---~kf~nfFgn~p~f~IpGRT---yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~ 581 (1042)
T KOG0924|consen 508 ATMDA---QKFSNFFGNCPQFTIPGRT---YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCD 581 (1042)
T ss_pred ccccH---HHHHHHhCCCceeeecCCc---cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHH
Confidence 99964 3444555544334433322 123444444444444444555554444 34789999999988877766
Q ss_pred HHhcC----------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-----------
Q 015158 297 KMRSR----------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL----------- 355 (412)
Q Consensus 297 ~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~----------- 355 (412)
.++++ ++.+..+++.++..-+.++++....|..++||+|+++++.+.+|++..||..+.
T Consensus 582 ~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G 661 (1042)
T KOG0924|consen 582 IIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIG 661 (1042)
T ss_pred HHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccc
Confidence 66542 678999999999999999999888899999999999999999999999996553
Q ss_pred -------CCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 356 -------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 356 -------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
|.|.+..-||.||+||.| +|.||-+++...+
T Consensus 662 ~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ay 699 (1042)
T KOG0924|consen 662 MDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTEDAY 699 (1042)
T ss_pred cceeEEEechhccchhhccccCCCC-CcceeeehhhhHH
Confidence 678899999999999996 7999999998654
No 114
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.7e-23 Score=200.28 Aligned_cols=325 Identities=21% Similarity=0.289 Sum_probs=218.1
Q ss_pred CChHHHHhhhhhhhcC----ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.+++-|..|++.+.+. ...++.+.||||||.+|+-++...+..++ .+|+++|-.+|..|+.+.|+... +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk---qvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK---QVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC---EEEEEeccccchHHHHHHHHHHh---CC
Confidence 5788999999998766 67899999999999999999999888774 89999999999999999998865 46
Q ss_pred EEEEEEcCcch----HHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc--c---CcHHHHHHHHH
Q 015158 137 KVHACVGGTSV----REDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS--R---GFKDQIYDIFQ 207 (412)
Q Consensus 137 ~~~~~~~~~~~----~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~--~---~~~~~~~~i~~ 207 (412)
++..++++-+. ..|.+...++..|+|+|-..++- .+.++++||+||=|.-.- . .|...--.++.
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL-------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC-------chhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 67777766554 34566667889999999544432 346899999999997431 1 12222223333
Q ss_pred hCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecC--CccccCCceEEEEEeccchhh-----HHHHHHHHHhc--CC
Q 015158 208 LLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR--DELTLEGIKQFHVNVEKEEWK-----LETLCDLYETL--AI 278 (412)
Q Consensus 208 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~--~~ 278 (412)
.-..++++|+-||||+-+....... +......... .....+.+. ...+...... ...+.+.+++. .+
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~--iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~g 420 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVE--IIDMRKEPLETGRSLSPALLEAIRKTLERG 420 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcce--EEeccccccccCccCCHHHHHHHHHHHhcC
Confidence 3345788999999997654444422 2111222211 112222222 2222221111 13344444332 44
Q ss_pred CcEEEEEcchhHH------------------------------------------------------------HHHHHHH
Q 015158 279 TQSVIFVNTRRKV------------------------------------------------------------DWLTDKM 298 (412)
Q Consensus 279 ~k~lif~~~~~~~------------------------------------------------------------~~~~~~L 298 (412)
+.+|+|.|.+..+ +++.+.|
T Consensus 421 eQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL 500 (730)
T COG1198 421 EQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEEL 500 (730)
T ss_pred CeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHH
Confidence 6788888776433 2222222
Q ss_pred hcC--CCeeEEecCCCCH--HHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC------------ChhhH
Q 015158 299 RSR--DHTVSATHGDMDQ--NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------QPENY 362 (412)
Q Consensus 299 ~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~------------s~~~~ 362 (412)
++. +..+..+.++... ..-+..+..|.+|+.+|||+|+++..|.|+|++..|..++... ...-+
T Consensus 501 ~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll 580 (730)
T COG1198 501 KRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLL 580 (730)
T ss_pred HHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHH
Confidence 222 3446666666533 3457889999999999999999999999999999987654321 23457
Q ss_pred HHhhhhcccCCCCceEEEEeccCcHHHHHH-----HHHHhccccc
Q 015158 363 LHRIGRSGRFGRKGVAINFVTRDDERMLFD-----IQKFYNVVIE 402 (412)
Q Consensus 363 ~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 402 (412)
.|-.||+||.+.+|.+++-....+...++. +..|++.+++
T Consensus 581 ~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~ 625 (730)
T COG1198 581 MQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQELA 625 (730)
T ss_pred HHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHH
Confidence 899999999999999999988887665544 3455555443
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.92 E-value=1.7e-22 Score=203.76 Aligned_cols=332 Identities=15% Similarity=0.152 Sum_probs=205.7
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhh----hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 47 QENLLRGIYAYGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 47 ~~~~~~~l~~~~~~~l~~~Q~~a~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
.+.+.+.+...||. +|+.|.+.+. .+.+++++++.||||+|||++|+++++.... .+.+++|.+||++|.+|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Q 307 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQ 307 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHH
Confidence 34667777778888 8999998665 5556889999999999999999999887654 23589999999999999
Q ss_pred HHH-HHHHhhcccC--cEEEEEEcCcchH---H---------------------------------------------HH
Q 015158 123 IEK-VMRALGDYLG--VKVHACVGGTSVR---E---------------------------------------------DQ 151 (412)
Q Consensus 123 ~~~-~~~~~~~~~~--~~~~~~~~~~~~~---~---------------------------------------------~~ 151 (412)
+.. ++..+....+ +++..+.|..+.- . +.
T Consensus 308 l~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~ 387 (850)
T TIGR01407 308 LLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFA 387 (850)
T ss_pred HHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHH
Confidence 865 4544433322 4444444333210 0 00
Q ss_pred -----------------------HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-------c---
Q 015158 152 -----------------------RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-------F--- 198 (412)
Q Consensus 152 -----------------------~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-------~--- 198 (412)
......++|+|+++..|+..+.....-+...+.+|+||||++.+.. +
T Consensus 388 ~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~ 467 (850)
T TIGR01407 388 QVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQEELDYA 467 (850)
T ss_pred HhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhcceeCHH
Confidence 0012345899999999888765433223456899999999865310 0
Q ss_pred --HHH----------------------------------------------------------------HHHHHHh----
Q 015158 199 --KDQ----------------------------------------------------------------IYDIFQL---- 208 (412)
Q Consensus 199 --~~~----------------------------------------------------------------~~~i~~~---- 208 (412)
... +......
T Consensus 468 ~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 547 (850)
T TIGR01407 468 DIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDD 547 (850)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 000 0000000
Q ss_pred -------C-------------------------------------CCCceEEEEeecCChH-HHHHHHHhcCCCeE--EE
Q 015158 209 -------L-------------------------------------PPKIQVGVFSATMPPE-ALEITRKFMNKPVR--IL 241 (412)
Q Consensus 209 -------~-------------------------------------~~~~~~i~~SAT~~~~-~~~~~~~~~~~~~~--~~ 241 (412)
+ +....+|++|||+... ..+.....++-... ..
T Consensus 548 ~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~ 627 (850)
T TIGR01407 548 FKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNT 627 (850)
T ss_pred HHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccce
Confidence 0 0134689999999742 23445444443211 11
Q ss_pred ecCCccc-cCCceEEEEE--ec-----cchhhHH----HHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCC--CeeEE
Q 015158 242 VKRDELT-LEGIKQFHVN--VE-----KEEWKLE----TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSA 307 (412)
Q Consensus 242 ~~~~~~~-~~~~~~~~~~--~~-----~~~~~~~----~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~--~~~~~ 307 (412)
....... ..+ ...+.. .+ ....... .+.+++.. ..+++|||++|.+..+.++..|.... .....
T Consensus 628 ~~~spf~~~~~-~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~ 705 (850)
T TIGR01407 628 IEPTPLNYAEN-QRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEV 705 (850)
T ss_pred ecCCCCCHHHc-CEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceE
Confidence 1100001 111 112211 11 0111122 22333333 44799999999999999999997521 12222
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCC--EEEEccCCCC---------------------------
Q 015158 308 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVS--LVINYDLPTQ--------------------------- 358 (412)
Q Consensus 308 ~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~--~vi~~~~~~s--------------------------- 358 (412)
+..+.. ..|.+++++|++++..||++|+.+.+|+|+|+.. .||+.+.|+.
T Consensus 706 l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~l 784 (850)
T TIGR01407 706 LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVL 784 (850)
T ss_pred EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhH
Confidence 333322 4788999999999999999999999999999754 5677776642
Q ss_pred ---hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 359 ---PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 359 ---~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
...+.|.+||+.|...+..++++++..
T Consensus 785 P~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 785 PMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred HHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 134689999999997766666666664
No 116
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.91 E-value=9.9e-23 Score=197.15 Aligned_cols=331 Identities=18% Similarity=0.226 Sum_probs=233.3
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHH
Q 015158 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKV 126 (412)
Q Consensus 47 ~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 126 (412)
++.....+....-...+..++.++..+.+++.+++.+.||+|||+.....+++........+++++.-|++--+...+++
T Consensus 159 s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeR 238 (924)
T KOG0920|consen 159 SESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAER 238 (924)
T ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHH
Confidence 34444444433333468889999999999999999999999999998888888764444677899999998777666666
Q ss_pred HHH-hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHH
Q 015158 127 MRA-LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYD 204 (412)
Q Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~ 204 (412)
+.. .+...|..|....+..+.. .....+.+||.+.|++.+.. .-...++..||+||+|+=. +.+|...+.+
T Consensus 239 Va~ER~~~~g~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk 311 (924)
T KOG0920|consen 239 VAKERGESLGEEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLK 311 (924)
T ss_pred HHHHhccccCCeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHH
Confidence 544 3333454554444333221 22368999999999998877 3446789999999999833 4445555555
Q ss_pred HHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccc----------------cCCceEEE-----------E
Q 015158 205 IFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT----------------LEGIKQFH-----------V 257 (412)
Q Consensus 205 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-----------~ 257 (412)
.+...+++.++|+||||... +.+..+++....+.+...... ........ .
T Consensus 312 ~lL~~~p~LkvILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (924)
T KOG0920|consen 312 DLLPRNPDLKVILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARL 388 (924)
T ss_pred HHhhhCCCceEEEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccc
Confidence 55556689999999999973 445555554443333221110 00000000 0
Q ss_pred EeccchhhHHHHHHHH----HhcCCCcEEEEEcchhHHHHHHHHHhcC-------CCeeEEecCCCCHHHHHHHHHHHhc
Q 015158 258 NVEKEEWKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRS 326 (412)
Q Consensus 258 ~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~ 326 (412)
.....+.....+..++ .....+.+|||.+...++..+++.|... ..-+..+|+.++..++..+...--.
T Consensus 389 ~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~ 468 (924)
T KOG0920|consen 389 KLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK 468 (924)
T ss_pred hhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC
Confidence 0000112233333333 2234588999999999999999999653 3567888999999999999998888
Q ss_pred CCCcEEEEcCCCcCCCCCCCCCEEEEccCC------------------CChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 327 GSSRVLITTDLLARGIDVQQVSLVINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 327 g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|..+||++|++++++|.++++-.||..+.. -|.+...||.||+||. .+|.||.+++.....
T Consensus 469 g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 469 GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 999999999999999999999999976642 4678899999999999 789999999886544
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2.3e-22 Score=189.44 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=220.1
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|.. |++.|.-+...++.|+ +..+.||.|||+++.++++.....+ ..+-+++|+.-|+.+-++.+..+...+|+
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G---~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQG---RRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcC---CCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 3666 8999999999998885 7799999999999988887666554 48999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC-------CCCCCceEEEEeCCchhh-ccC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS-------LRPDNIRIFVLDEADEML-SRG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-------~~~~~~~~iiiDE~h~~~-~~~----------- 197 (412)
.+..+.++.+....... -.++|+++|...|---+.+.. ...+.+.+.|+||++.++ +..
T Consensus 149 svg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~ 226 (764)
T PRK12326 149 TVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTP 226 (764)
T ss_pred EEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCCCc
Confidence 99999887765544333 357999999877633222211 123567899999999753 100
Q ss_pred ---cHHHHHHHHHhCC----------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLLP---------------------------------------------------------------- 210 (412)
Q Consensus 198 ---~~~~~~~i~~~~~---------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 227 ~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV 306 (764)
T PRK12326 227 GEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIV 306 (764)
T ss_pred chhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0001111111110
Q ss_pred ------------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCC
Q 015158 211 ------------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNK 236 (412)
Q Consensus 211 ------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~ 236 (412)
--.++.|||+|..... +.+...++-
T Consensus 307 ~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~-~Ef~~iY~l 385 (764)
T PRK12326 307 RDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG-EQLRQFYDL 385 (764)
T ss_pred ECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH-HHHHHHhCC
Confidence 0136788888876544 344444444
Q ss_pred CeEEE-ecCCccccCCceEEEEEeccchhhHHHHHHHH-Hhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 237 PVRIL-VKRDELTLEGIKQFHVNVEKEEWKLETLCDLY-ETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
.+... ............ ........+...+.+-+ +.+ .+.++||.+.|++..+.+++.|.+.+++..++++...
T Consensus 386 ~Vv~IPtnkp~~R~d~~d---~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 386 GVSVIPPNKPNIREDEAD---RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred cEEECCCCCCceeecCCC---ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 43221 111111111111 11222334554444433 333 5579999999999999999999999999999998744
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEcCCCcCCCCCC---------------CCCEEEEccCCCChhhHHHhhhhcccCCCCce
Q 015158 314 QNTRDIIMREFRSG-SSRVLITTDLLARGIDVQ---------------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGV 377 (412)
Q Consensus 314 ~~~r~~~~~~f~~g-~~~vlv~t~~~~~G~d~~---------------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 377 (412)
..+ ..++. +.| ...|.|+|+++++|.|+. +--|||....+.|...-.|..||+||-|.+|.
T Consensus 463 ~~E-A~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEE-ARIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhH-HHHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 333 33333 355 445999999999999987 33478989999999999999999999999999
Q ss_pred EEEEeccCcHH
Q 015158 378 AINFVTRDDER 388 (412)
Q Consensus 378 ~~~~~~~~~~~ 388 (412)
+..|++-.|.-
T Consensus 540 s~f~lSleDdl 550 (764)
T PRK12326 540 SVFFVSLEDDV 550 (764)
T ss_pred eeEEEEcchhH
Confidence 99999887663
No 118
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=6.4e-24 Score=205.50 Aligned_cols=345 Identities=19% Similarity=0.181 Sum_probs=232.6
Q ss_pred CCCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 28 QDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
+..-..+.+....|..+..++.+... .+||.||.+.++.++ .++++|+...+|-|||...+-.+......
T Consensus 343 p~~~~~~~~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~ 416 (1373)
T KOG0384|consen 343 PNKGCKYRPQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHS 416 (1373)
T ss_pred CCCccccCccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHh
Confidence 33444444555677777666666555 459999999999876 47899999999999995543323222222
Q ss_pred CCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh----cC-----CCcEEEeChHHHHHHHHc
Q 015158 104 GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL----SS-----GVHVVVGTPGRVFDMLRR 174 (412)
Q Consensus 104 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~iii~T~~~l~~~~~~ 174 (412)
....+..|+|+|...+. .|.++|..+. ..++.+++|+.......... .. ..+++++|++.++.--.
T Consensus 417 ~~~~gpflvvvplst~~-~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~- 491 (1373)
T KOG0384|consen 417 LQIHGPFLVVVPLSTIT-AWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA- 491 (1373)
T ss_pred hhccCCeEEEeehhhhH-HHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh-
Confidence 32345799999987754 4888888876 67888899887755543221 12 47899999999864322
Q ss_pred CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcC--CCeEEEe----------
Q 015158 175 QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMN--KPVRILV---------- 242 (412)
Q Consensus 175 ~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~---------- 242 (412)
-+..-.+.++++||||++-+.. ..+...+..+.. ...+++|+||..+....+..++. .|..+..
T Consensus 492 -~L~~i~w~~~~vDeahrLkN~~--~~l~~~l~~f~~-~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~ 567 (1373)
T KOG0384|consen 492 -ELSKIPWRYLLVDEAHRLKNDE--SKLYESLNQFKM-NHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE 567 (1373)
T ss_pred -hhccCCcceeeecHHhhcCchH--HHHHHHHHHhcc-cceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc
Confidence 2223367899999999987654 344444555543 34688999986432222222211 0000000
Q ss_pred -----------------------cCCccccCCceE---------------------------------------------
Q 015158 243 -----------------------KRDELTLEGIKQ--------------------------------------------- 254 (412)
Q Consensus 243 -----------------------~~~~~~~~~~~~--------------------------------------------- 254 (412)
..+...++....
T Consensus 568 ~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkK 647 (1373)
T KOG0384|consen 568 ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKK 647 (1373)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHH
Confidence 000000111111
Q ss_pred ----EEEEeccchhh---------HHHHHHHH-------------Hhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeE
Q 015158 255 ----FHVNVEKEEWK---------LETLCDLY-------------ETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVS 306 (412)
Q Consensus 255 ----~~~~~~~~~~~---------~~~l~~~~-------------~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~ 306 (412)
.++.-...+.. ...+..++ ... .+.++|||.+-+.-.+-++++|..+++...
T Consensus 648 ccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQ 727 (1373)
T KOG0384|consen 648 CCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQ 727 (1373)
T ss_pred hcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcce
Confidence 11111000000 11223222 222 236899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHHHhcC---CCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCc--eEEEE
Q 015158 307 ATHGDMDQNTRDIIMREFRSG---SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG--VAINF 381 (412)
Q Consensus 307 ~~~~~~~~~~r~~~~~~f~~g---~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g--~~~~~ 381 (412)
.+.|...-+.|.+.++.|... ...+|+||.+.+-|||+..+++||+|+..|++..=+|+..|++|.|+.. .+|-+
T Consensus 728 RLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRL 807 (1373)
T KOG0384|consen 728 RLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRL 807 (1373)
T ss_pred eccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEE
Confidence 999999999999999999973 5678999999999999999999999999999999999999999999875 47777
Q ss_pred eccCcH
Q 015158 382 VTRDDE 387 (412)
Q Consensus 382 ~~~~~~ 387 (412)
++.+..
T Consensus 808 VTk~Tv 813 (1373)
T KOG0384|consen 808 VTKNTV 813 (1373)
T ss_pred ecCCch
Confidence 877633
No 119
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.91 E-value=1.8e-21 Score=185.39 Aligned_cols=315 Identities=18% Similarity=0.136 Sum_probs=201.8
Q ss_pred CChHHHHhhhhhhhcC----------ccEEEECCCCCCchhHhHHHHHHhhccCCCc-----eeEEEEcCCHHHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCKG----------LDVIQQAQSGTGKTATFCSGILQQLDYGLVE-----CQALVLAPTRELAQQIEK 125 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~----------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~lil~P~~~L~~q~~~ 125 (412)
.++|||++.+.-+.++ ..+++...+|+|||+..+..+...+... +. .+.|||+| ..|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~-P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQF-PQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhC-cCccccccccEEEcc-HHHHHHHHH
Confidence 4899999999887752 3468889999999988766666555543 44 68999999 588999999
Q ss_pred HHHHhhcccCcEEEEEEcCcchHH--HHHH-----hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 126 VMRALGDYLGVKVHACVGGTSVRE--DQRI-----LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
+|.+|.....+....+.+...... ...+ ..-...|.+.+++.+...... +....++++|+||.|..-+..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~~- 392 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNSD- 392 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccchh-
Confidence 999997765677777777665300 0111 112346889999999765543 334578999999999977665
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCChH-HHHHHHHh-----------------cCCCe----------------------
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPPE-ALEITRKF-----------------MNKPV---------------------- 238 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~~~-----------------~~~~~---------------------- 238 (412)
..+...+..+. -.+.|++|+||-.+ ..+.+.-+ +..+.
T Consensus 393 -s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 393 -SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred -hHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 44555555554 44579999998421 11111100 00000
Q ss_pred --------EEEec-CCccccCCceEEEEEeccchh---------------------------------------------
Q 015158 239 --------RILVK-RDELTLEGIKQFHVNVEKEEW--------------------------------------------- 264 (412)
Q Consensus 239 --------~~~~~-~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 264 (412)
..+.. ......|....+.+.+....-
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 00000 000011112222222221110
Q ss_pred ----------------------------hHHHHHHHHHhc---CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 265 ----------------------------KLETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 265 ----------------------------~~~~l~~~~~~~---~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
+...|..++... ...++.+..|-....+.+....+-+|..+..++|.++
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 111111221111 1112233333334444444444445999999999999
Q ss_pred HHHHHHHHHHHhcCCC--c-EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEe
Q 015158 314 QNTRDIIMREFRSGSS--R-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 382 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~--~-vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 382 (412)
..+|..+++.|++... . +|.++.+.+.|+++-+++.||++++.|+++.-.|+++|+-|.|+...|++|-
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999998432 3 5556789999999999999999999999999999999999999988777654
No 120
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=177.93 Aligned_cols=327 Identities=15% Similarity=0.196 Sum_probs=221.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
..+|.+.+.++.+.+.|+.+.-...+..+.+.+..+..++-+++++.||||||...-.+.+....... ..+....|.+
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQprr 101 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQPRR 101 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCchH
Confidence 78999999999999999987666567777788888888999999999999999887766666544332 3466677888
Q ss_pred HHHHHHHHHHHH-hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh--
Q 015158 118 ELAQQIEKVMRA-LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-- 194 (412)
Q Consensus 118 ~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-- 194 (412)
.-+.+.+.+... +-...|-+|..... ..++...+.-.-+||.++|++..-...+ +..+++||+||||+=.
T Consensus 102 vaamsva~RVadEMDv~lG~EVGysIr------fEdC~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLDeahERtlA 174 (699)
T KOG0925|consen 102 VAAMSVAQRVADEMDVTLGEEVGYSIR------FEDCTSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILDEAHERTLA 174 (699)
T ss_pred HHHHHHHHHHHHHhccccchhcccccc------ccccCChhHHHHHhcchHHHHHHhhCcc-cccccEEEechhhhhhHH
Confidence 777766655443 21112222221111 1111112223446888888776655443 4679999999999722
Q ss_pred ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHH
Q 015158 195 SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE 274 (412)
Q Consensus 195 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (412)
.......++.+.... +..++|.||||+.. .-++.++++...+.+.. ...++.++......+.-...+..+++
T Consensus 175 TDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaairtV~q 246 (699)
T KOG0925|consen 175 TDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAAIRTVLQ 246 (699)
T ss_pred HHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHHHHHHHH
Confidence 222334455555555 58999999999864 45666777766666554 12344455544443433334444444
Q ss_pred hc---CCCcEEEEEcchhHHHHHHHHHhcC---------CCeeEEecCCCCHHHHHHHHHHHh---cC--CCcEEEEcCC
Q 015158 275 TL---AITQSVIFVNTRRKVDWLTDKMRSR---------DHTVSATHGDMDQNTRDIIMREFR---SG--SSRVLITTDL 337 (412)
Q Consensus 275 ~~---~~~k~lif~~~~~~~~~~~~~L~~~---------~~~~~~~~~~~~~~~r~~~~~~f~---~g--~~~vlv~t~~ 337 (412)
-+ ..|.++||..+.++.+..++.+... ...+..+| +.++..+++-.. +| ..+|+|+|++
T Consensus 247 ih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstni 322 (699)
T KOG0925|consen 247 IHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNI 322 (699)
T ss_pred HHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecc
Confidence 33 4588999999999999999988743 23566666 223333332221 22 3579999999
Q ss_pred CcCCCCCCCCCEEEEcc------------------CCCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 338 LARGIDVQQVSLVINYD------------------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 338 ~~~G~d~~~~~~vi~~~------------------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
.++.+.++++.+||.-+ .|.|.++..||.||+||. .+|+|+.++++..
T Consensus 323 aetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~~ 388 (699)
T KOG0925|consen 323 AETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 388 (699)
T ss_pred hheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHHh
Confidence 99999999999999644 367899999999999999 7999999998753
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=2.8e-22 Score=194.16 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=109.5
Q ss_pred hhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcC
Q 015158 263 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 340 (412)
Q Consensus 263 ~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~ 340 (412)
..+...+.+.+... .+.++||||+|++.++.+++.|.+.++.+.++|+ .+.+|+..+..|..+...|+|+|+++++
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 45677777777554 5689999999999999999999999999999997 5778999999999999999999999999
Q ss_pred CCCCC---CCC-----EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 341 GIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 341 G~d~~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|+|++ .+. +||.+..|.|...+.|++||+||.|.+|.+..|++..|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 343 4488889999999999999999999999999999887664
No 122
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.9e-22 Score=191.22 Aligned_cols=316 Identities=17% Similarity=0.197 Sum_probs=215.7
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|.-.--.+.+|+ +..+.||+|||+++.++++.....+ ..+-+++|+..|+.+-++.+..+....|+.
T Consensus 80 Gm~-~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G---~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~ 153 (913)
T PRK13103 80 GMR-HFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSG---KGVHVVTVNDYLARRDANWMRPLYEFLGLS 153 (913)
T ss_pred CCC-cchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHHHhcccCCE
Confidence 555 8888888777776665 8899999999999988887665554 479999999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC-------CCCceEEEEeCCchhh-ccC------------
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLR-------PDNIRIFVLDEADEML-SRG------------ 197 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~-------~~~~~~iiiDE~h~~~-~~~------------ 197 (412)
+.++.++.+........ .++|+++|...|---+.+.... .+.+.++|+||+|.++ +..
T Consensus 154 v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~ 231 (913)
T PRK13103 154 VGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAED 231 (913)
T ss_pred EEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCCCcc
Confidence 99998877655444333 3799999988862222222222 3678899999999753 110
Q ss_pred ---cHHHHHHHHHhC-----------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLL----------------------------------------------------------------- 209 (412)
Q Consensus 198 ---~~~~~~~i~~~~----------------------------------------------------------------- 209 (412)
....+..+...+
T Consensus 232 ~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~ 311 (913)
T PRK13103 232 SSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVY 311 (913)
T ss_pred chHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHH
Confidence 000011111000
Q ss_pred ---C-------------------------------------------------------------------CCceEEEEe
Q 015158 210 ---P-------------------------------------------------------------------PKIQVGVFS 219 (412)
Q Consensus 210 ---~-------------------------------------------------------------------~~~~~i~~S 219 (412)
. --.++.|||
T Consensus 312 ~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMT 391 (913)
T PRK13103 312 AGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMT 391 (913)
T ss_pred HHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCC
Confidence 0 012566677
Q ss_pred ecCChHHHHHHHHhcCCCeEE-EecCCccccCCceEEEEEeccchhhHHHHHHHHHh-c-CCCcEEEEEcchhHHHHHHH
Q 015158 220 ATMPPEALEITRKFMNKPVRI-LVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTD 296 (412)
Q Consensus 220 AT~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~~~~ 296 (412)
+|......+ +...++-.+.. ....... ....... .......+...+.+-+.. + .+.++||-+.|++..+.+++
T Consensus 392 GTa~te~~E-f~~iY~l~Vv~IPTnkP~~-R~D~~d~--vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~ 467 (913)
T PRK13103 392 GTADTEAFE-FRQIYGLDVVVIPPNKPLA-RKDFNDL--VYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSN 467 (913)
T ss_pred CCCHHHHHH-HHHHhCCCEEECCCCCCcc-cccCCCe--EEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHH
Confidence 776544333 33333333322 2222111 1111111 122223455554444433 3 45799999999999999999
Q ss_pred HHhcCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCCCcCCCCCC------------------------------
Q 015158 297 KMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDLLARGIDVQ------------------------------ 345 (412)
Q Consensus 297 ~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~~~~G~d~~------------------------------ 345 (412)
.|.+.++...+++......+ ..|+. ..| ...|.|+|+++++|.|+.
T Consensus 468 ~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (913)
T PRK13103 468 LLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKR 544 (913)
T ss_pred HHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhH
Confidence 99999999888887644333 23333 456 456999999999999985
Q ss_pred -------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 346 -------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 346 -------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
+--+||....+.|...-.|..||+||-|.+|.+-.|++-.|.-
T Consensus 545 ~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 545 HQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 3457888999999999999999999999999999999886653
No 123
>COG4889 Predicted helicase [General function prediction only]
Probab=99.90 E-value=7e-24 Score=198.55 Aligned_cols=358 Identities=18% Similarity=0.190 Sum_probs=210.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC----ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
-+|+.+.. .++...+.-..-.+|||||+.|+....++ .+.-+.++||+|||++.+- +...+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeec
Confidence 44555433 34455555556667999999999998875 4567889999999998753 3344433 4899999
Q ss_pred CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH-------------------------HHHhcCCCcEEEeChHHHH
Q 015158 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-------------------------QRILSSGVHVVVGTPGRVF 169 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~iii~T~~~l~ 169 (412)
|+.+|..|+.+++..-.. ..+.....+++...... ......+--|+++||+++.
T Consensus 214 PSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 999999999988876422 23333333333321110 0112234469999999998
Q ss_pred HHHHcCCCCCCCceEEEEeCCchhhccCcH----HHHHHHHHhC-CCCceEEEEeecCChHHHHHHHHhcCC-CeEEEec
Q 015158 170 DMLRRQSLRPDNIRIFVLDEADEMLSRGFK----DQIYDIFQLL-PPKIQVGVFSATMPPEALEITRKFMNK-PVRILVK 243 (412)
Q Consensus 170 ~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~----~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~ 243 (412)
..-+....-+..+++||+||||+...-.+. ..+.++-+.- -+..+.+.|||||.--.+..-..--.. .....+.
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMD 372 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMD 372 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccc
Confidence 877666666788999999999985432111 1111111000 013457899999842110000000000 0000000
Q ss_pred CCc-------------cc----cCCceEEEEEeccc---------------hhhHHHHHHH-------HHhc--------
Q 015158 244 RDE-------------LT----LEGIKQFHVNVEKE---------------EWKLETLCDL-------YETL-------- 276 (412)
Q Consensus 244 ~~~-------------~~----~~~~~~~~~~~~~~---------------~~~~~~l~~~-------~~~~-------- 276 (412)
.+. .. ....+.++..++.. .-..+....+ .+..
T Consensus 373 De~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~ 452 (1518)
T COG4889 373 DELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKN 452 (1518)
T ss_pred hhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccC
Confidence 000 00 00111112221110 1111111111 1111
Q ss_pred ------CCCcEEEEEcchhHHHHHHHHHhc---------------CCCeeEEecCCCCHHHHHHHHHH---HhcCCCcEE
Q 015158 277 ------AITQSVIFVNTRRKVDWLTDKMRS---------------RDHTVSATHGDMDQNTRDIIMRE---FRSGSSRVL 332 (412)
Q Consensus 277 ------~~~k~lif~~~~~~~~~~~~~L~~---------------~~~~~~~~~~~~~~~~r~~~~~~---f~~g~~~vl 332 (412)
+..+.+-||.+++....+++.+.. ..+.+..+.|.|+..+|...+.. |...+.+||
T Consensus 453 ~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIl 532 (1518)
T COG4889 453 IKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKIL 532 (1518)
T ss_pred CcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheee
Confidence 113568899888777766655532 13456677888998888554442 233467788
Q ss_pred EEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCC-CceEEEEec---------------cCcHHHHHHHHHH
Q 015158 333 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---------------RDDERMLFDIQKF 396 (412)
Q Consensus 333 v~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---------------~~~~~~~~~~~~~ 396 (412)
-...++++|+|+|.++.||++++..|+.+.+|.+||+.|..+ ...+|++++ ..+.+.+..+.+.
T Consensus 533 SNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~nFk~VWqVlnA 612 (1518)
T COG4889 533 SNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTNFKNVWQVLKA 612 (1518)
T ss_pred ccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCccHHHHHHHHHH
Confidence 888899999999999999999999999999999999999743 234555553 2355666667777
Q ss_pred hcccccc
Q 015158 397 YNVVIEE 403 (412)
Q Consensus 397 ~~~~~~~ 403 (412)
++.+.+.
T Consensus 613 LRShD~a 619 (1518)
T COG4889 613 LRSHDEA 619 (1518)
T ss_pred HHhcCHH
Confidence 7665553
No 124
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.90 E-value=3.3e-21 Score=170.44 Aligned_cols=327 Identities=14% Similarity=0.170 Sum_probs=218.9
Q ss_pred CCChHHHHhhhhhhh-cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEE
Q 015158 60 EKPSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKV 138 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 138 (412)
..+-|+|++.+...+ .|.++++...+|-|||..++..+......+ ..|||||. ++...|++.+..|.+...- +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEw----plliVcPA-svrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEW----PLLIVCPA-SVRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcC----cEEEEecH-HHhHHHHHHHHHhcccccc-e
Confidence 457899999998854 578899999999999998865444333333 69999995 6677799999998765432 4
Q ss_pred EEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 139 HACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
....++.....+ ......|.|.+++.+..+-. .+....+++||+||+|.+.+.. ....+.+...+..-.++|++
T Consensus 271 ~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEe
Confidence 444433332211 12335799999999865433 2333568999999999876554 34455555555566779999
Q ss_pred eecCCh-------------------HHHHHHHHhcCC-CeEEEecCC--------------------------ccccCCc
Q 015158 219 SATMPP-------------------EALEITRKFMNK-PVRILVKRD--------------------------ELTLEGI 252 (412)
Q Consensus 219 SAT~~~-------------------~~~~~~~~~~~~-~~~~~~~~~--------------------------~~~~~~~ 252 (412)
|+||.- +..++...+... ...+-.+.. ...++.-
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKr 424 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKR 424 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999841 111111111110 000000000 0011221
Q ss_pred eEEEEEeccc------------------------------------hhhHHHHHHHHHh------cCCCcEEEEEcchhH
Q 015158 253 KQFHVNVEKE------------------------------------EWKLETLCDLYET------LAITQSVIFVNTRRK 290 (412)
Q Consensus 253 ~~~~~~~~~~------------------------------------~~~~~~l~~~~~~------~~~~k~lif~~~~~~ 290 (412)
+...+..... ..+...+.+.+.. ....|.+|||....-
T Consensus 425 r~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 425 REVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred eEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 2222211110 1123333344333 244689999999999
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcE-EEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhh
Q 015158 291 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRV-LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 368 (412)
Q Consensus 291 ~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR 368 (412)
.+.+...+.++++..+.+.|..++.+|....+.|+.. +..| +++..+.++|+++...+.|++.+++|++.-++|+-.|
T Consensus 505 Ld~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDR 584 (689)
T KOG1000|consen 505 LDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDR 584 (689)
T ss_pred HHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhh
Confidence 9999999999999999999999999999999999875 4444 4566789999999999999999999999999999999
Q ss_pred cccCCCCceEEEEecc----CcHHHHHHHHHHhc
Q 015158 369 SGRFGRKGVAINFVTR----DDERMLFDIQKFYN 398 (412)
Q Consensus 369 ~~R~g~~g~~~~~~~~----~~~~~~~~~~~~~~ 398 (412)
+.|.|+...+.+++.- -|+.....+.+.+.
T Consensus 585 aHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~ 618 (689)
T KOG1000|consen 585 AHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLD 618 (689)
T ss_pred hhhccccceeeEEEEEecCchHHHHHHHHHHHHH
Confidence 9999998776555532 25555555555443
No 125
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=185.91 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=115.1
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc-EEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV-KVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~ 140 (412)
|..||.+.+..+-.+.+++|++||.+|||.+...++=..+... ...-+++++|+++|+.|....+......... ....
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes-D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES-DSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc-CCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 8889999999999999999999999999988766666555544 4456999999999999998777665422211 1111
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc---CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEE
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR---QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~---~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 217 (412)
+.|.-+ .+..+..-.++|+|+-|+-+...+.. ......++++||+||+|.+.+..-...+..+.... .++.++
T Consensus 591 l~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L~ 666 (1330)
T KOG0949|consen 591 LLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFLV 666 (1330)
T ss_pred hHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCeeE
Confidence 222221 23333334689999999999888776 33445788999999999988766555555555544 567999
Q ss_pred EeecCCh
Q 015158 218 FSATMPP 224 (412)
Q Consensus 218 ~SAT~~~ 224 (412)
+|||..+
T Consensus 667 LSATigN 673 (1330)
T KOG0949|consen 667 LSATIGN 673 (1330)
T ss_pred EecccCC
Confidence 9999875
No 126
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=2.1e-20 Score=180.79 Aligned_cols=129 Identities=25% Similarity=0.362 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCC
Q 015158 265 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342 (412)
Q Consensus 265 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~ 342 (412)
....+.+.+... .+.+++|||++++.++.+++.|.+.|+.+..+|++++..+|.++++.|++|+++|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 444444444442 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEcc-----CCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 343 DVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 343 d~~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
|+|.+++|++++ .|.+...|+|++||+||. ..|.+++|.+..+..+...+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 999999999877 788999999999999998 689999999987654444443
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.2e-20 Score=168.76 Aligned_cols=169 Identities=24% Similarity=0.288 Sum_probs=125.8
Q ss_pred CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccch-hhHHHHHHHHHhc-CCCcEEEEEcchh
Q 015158 212 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEE-WKLETLCDLYETL-AITQSVIFVNTRR 289 (412)
Q Consensus 212 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~k~lif~~~~~ 289 (412)
..|.|++||||++.-.+ .-.+..+.-.+.+....-+ ...+.+.. ...+.+.++.+.. .+.++||-+-+++
T Consensus 386 ~~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP-----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKk 457 (663)
T COG0556 386 IPQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDP-----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKK 457 (663)
T ss_pred cCCEEEEECCCChHHHH---hccCceeEEeecCCCCCCC-----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHH
Confidence 46899999999763222 1222222222222222111 12222222 2334444444432 4589999999999
Q ss_pred HHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-----CCChhhHHH
Q 015158 290 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLH 364 (412)
Q Consensus 290 ~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~Q 364 (412)
-|+.+.++|.+.|+.+..+|++...-+|.++++..+.|+++|||+.+.+-+|+|+|.+..|.+++. ..|..+++|
T Consensus 458 mAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 458 MAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764 578999999
Q ss_pred hhhhcccCCCCceEEEEeccCcHHH
Q 015158 365 RIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 365 ~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
.+||+.|- -.|.++++.+.-...+
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~sM 561 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDSM 561 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHHH
Confidence 99999997 5799998887754433
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.1e-21 Score=182.33 Aligned_cols=308 Identities=17% Similarity=0.191 Sum_probs=198.6
Q ss_pred HhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEc
Q 015158 67 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVG 143 (412)
Q Consensus 67 ~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 143 (412)
.++++.|..+.-++|+|.||||||+..-..++.+=... ...+-+-|.-|++.-+-.++++...-....+..|.....
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 35677777788899999999999988766565542211 123457788899877777766554422224444444332
Q ss_pred CcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHHHHHHH---HhCC------CC
Q 015158 144 GTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYDIF---QLLP------PK 212 (412)
Q Consensus 144 ~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~i~---~~~~------~~ 212 (412)
-.. .......|-++|.+.|++.+.+ .+.+..++.||+||||+=.-.. ....+.++. .... ..
T Consensus 342 fd~------ti~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 342 FDG------TIGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred ecc------ccCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 111 1223468999999999998865 4556889999999999732111 112222222 2222 26
Q ss_pred ceEEEEeecCChHHHHHHHHhcCCCe-EEEecCCccccCCceEEEEEeccchhhHHHHHH---HHHhcCCCcEEEEEcch
Q 015158 213 IQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVEKEEWKLETLCD---LYETLAITQSVIFVNTR 288 (412)
Q Consensus 213 ~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~k~lif~~~~ 288 (412)
.+.|.||||+.-........++..+. .+.+.... ..+...+-.....++..+.+.. +.++.+.|.+|||+..+
T Consensus 415 LKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQ---fPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQ 491 (1172)
T KOG0926|consen 415 LKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQ---FPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQ 491 (1172)
T ss_pred eeEEEEeeeEEecccccCceecCCCCceeeeeccc---CceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeCh
Confidence 78999999996544443444444322 22222211 1122222222222333344443 44555779999999999
Q ss_pred hHHHHHHHHHhcCC------------------------------------------------------------------
Q 015158 289 RKVDWLTDKMRSRD------------------------------------------------------------------ 302 (412)
Q Consensus 289 ~~~~~~~~~L~~~~------------------------------------------------------------------ 302 (412)
.++.++++.|+++.
T Consensus 492 qEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~ 571 (1172)
T KOG0926|consen 492 QEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNAL 571 (1172)
T ss_pred HHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcc
Confidence 99999999998751
Q ss_pred ---------------------------------CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 303 ---------------------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 303 ---------------------------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
.-+..+++-++.+.+.++++.-..|..-++|+|+.+++.+.+|+++.
T Consensus 572 ~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkY 651 (1172)
T KOG0926|consen 572 ADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKY 651 (1172)
T ss_pred ccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeE
Confidence 00333344456666666666556677779999999999999999999
Q ss_pred EEEccCC------------------CChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 350 VINYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 350 vi~~~~~------------------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
||..|.. .|.+.--||.||+||.| +|.||-+|+..
T Consensus 652 VVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 652 VVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred EEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 9976642 46778899999999996 79999999764
No 129
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.88 E-value=7.6e-21 Score=160.68 Aligned_cols=187 Identities=37% Similarity=0.567 Sum_probs=146.9
Q ss_pred HCCCCCChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 56 AYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
.+++..++++|.+++..+... +++++.++||+|||.++..+++..+.... ..++++++|+..++.|+.+.+.......
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 346677999999999999998 99999999999999998888888776542 3579999999999999999998876544
Q ss_pred CcEEEEEEcCcc-hHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCc
Q 015158 135 GVKVHACVGGTS-VREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKI 213 (412)
Q Consensus 135 ~~~~~~~~~~~~-~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~ 213 (412)
........++.. ............+++++|++.+.............++++|+||+|.+....+...+..+...+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 423333333333 3333333333349999999999998887666667889999999999887567788888888888889
Q ss_pred eEEEEeecCChHHHHHHHHhcCCCeEEEec
Q 015158 214 QVGVFSATMPPEALEITRKFMNKPVRILVK 243 (412)
Q Consensus 214 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
+++++|||++.+.......++.....+...
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999999988888888777755555444
No 130
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=5.8e-21 Score=184.81 Aligned_cols=317 Identities=20% Similarity=0.234 Sum_probs=215.1
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCC------CceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGL------VECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.+|.||.+.++++.. +-++|++..+|-|||+..+-.++......+ .....|||||. .|+.-|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 489999999998763 457899999999999876544443333221 12348999996 8899999999999
Q ss_pred hcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC
Q 015158 131 GDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP 210 (412)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~ 210 (412)
++. +++..+.|........+..-++++|+|++|+.+.+-+.. +....|-++|+||-|-+.+.. ..+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~k--tkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNSK--TKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecchH--HHHHHHHHHHh
Confidence 875 677777777665555444455679999999998765542 222467799999999766543 44555555554
Q ss_pred CCceEEEEeecCChH-HHHH-----------------HHHhcCCCeEEEecCC---------------------------
Q 015158 211 PKIQVGVFSATMPPE-ALEI-----------------TRKFMNKPVRILVKRD--------------------------- 245 (412)
Q Consensus 211 ~~~~~i~~SAT~~~~-~~~~-----------------~~~~~~~~~~~~~~~~--------------------------- 245 (412)
.+ +.+.+|+||-.+ ..+. ++.-+++|+.......
T Consensus 1128 a~-hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1128 AN-HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hc-ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33 468899998421 1110 0010111110000000
Q ss_pred -------ccccCCceEEE-------------------------------------------------------EEecc--
Q 015158 246 -------ELTLEGIKQFH-------------------------------------------------------VNVEK-- 261 (412)
Q Consensus 246 -------~~~~~~~~~~~-------------------------------------------------------~~~~~-- 261 (412)
+..+..+..++ .....
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00000011111 11110
Q ss_pred ---------------------chhhHHHHHHHHHhcC----------------CCcEEEEEcchhHHHHHHHHHhcC---
Q 015158 262 ---------------------EEWKLETLCDLYETLA----------------ITQSVIFVNTRRKVDWLTDKMRSR--- 301 (412)
Q Consensus 262 ---------------------~~~~~~~l~~~~~~~~----------------~~k~lif~~~~~~~~~~~~~L~~~--- 301 (412)
+..|..++.+++.... ..++||||+-+..++-+.+-|-+.
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 1235566666664431 247999999999999888777554
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEE-EcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCce--
Q 015158 302 DHTVSATHGDMDQNTRDIIMREFRSG-SSRVLI-TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV-- 377 (412)
Q Consensus 302 ~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv-~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~-- 377 (412)
......+.|..++.+|.++.++|+++ .++||+ +|...+.|+|+.++++||+++..|++..=.|++.||+|.|++..
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 23455889999999999999999998 788775 56799999999999999999999999999999999999998765
Q ss_pred EEEEeccC
Q 015158 378 AINFVTRD 385 (412)
Q Consensus 378 ~~~~~~~~ 385 (412)
+|-+++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 56666665
No 131
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.87 E-value=1.7e-19 Score=179.56 Aligned_cols=320 Identities=17% Similarity=0.195 Sum_probs=194.7
Q ss_pred HHCCCCCChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH-HHHHHH
Q 015158 55 YAYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI-EKVMRA 129 (412)
Q Consensus 55 ~~~~~~~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~-~~~~~~ 129 (412)
...+|. .|+-|.+....+. +++.+++.++||+|||++|+++++... .+.+++|.+||++|.+|. .+.+..
T Consensus 240 ~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 240 ALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred ccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 334666 8999998554433 467889999999999999999988654 235899999999999999 466666
Q ss_pred hhcccCcEEEEEEcCcchHHH------------------------------------------------H----------
Q 015158 130 LGDYLGVKVHACVGGTSVRED------------------------------------------------Q---------- 151 (412)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~---------- 151 (412)
+....++++..+.|+.+.--. .
T Consensus 315 l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~ 394 (820)
T PRK07246 315 IQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQ 394 (820)
T ss_pred HHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCC
Confidence 665556666555544321000 0
Q ss_pred -------------HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----c-------HH------
Q 015158 152 -------------RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----F-------KD------ 200 (412)
Q Consensus 152 -------------~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----~-------~~------ 200 (412)
......++|+|+.+..|...+..... +...+.+|+||||++.+.. . ..
T Consensus 395 ~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 395 SSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 00023357999999988876644332 4568999999999865211 0 00
Q ss_pred --------------------------------------------HH-----------HHHHHh-----------------
Q 015158 201 --------------------------------------------QI-----------YDIFQL----------------- 208 (412)
Q Consensus 201 --------------------------------------------~~-----------~~i~~~----------------- 208 (412)
.+ ..++..
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 00 000000
Q ss_pred ----------------CCCCceEEEEeecCCh-HHHHHHHHhcCCCeEEEecCCccccCCceEEEEE--ecc-----chh
Q 015158 209 ----------------LPPKIQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFHVN--VEK-----EEW 264 (412)
Q Consensus 209 ----------------~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~ 264 (412)
++....+|++|||+.. .... +...++-......... .....-...+.. ++. ...
T Consensus 554 ~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~-~~~~~~~~~~i~~~~p~~~~~~~~~ 631 (820)
T PRK07246 554 TYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE-KDKKQDQLVVVDQDMPLVTETSDEV 631 (820)
T ss_pred eEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC-CChHHccEEEeCCCCCCCCCCChHH
Confidence 0012467888888852 1112 3333332111110000 011111111111 111 111
Q ss_pred hHHHHHHHHHh--cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCC
Q 015158 265 KLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342 (412)
Q Consensus 265 ~~~~l~~~~~~--~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~ 342 (412)
....+.+.+.. ...++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|..+.+|+
T Consensus 632 ~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 632 YAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCC
Confidence 22222222211 345899999999999999999997664444 4444322 256789999998889999999999999
Q ss_pred CCCC--CCEEEEccCCCC------------------------------hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 343 DVQQ--VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 343 d~~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
|+|+ ...||+.++|+. ...+.|.+||+.|...+..+++++++.
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 9973 555677776632 224799999999987655566666665
No 132
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.86 E-value=9.7e-20 Score=177.62 Aligned_cols=143 Identities=27% Similarity=0.358 Sum_probs=125.2
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCC
Q 015158 265 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 342 (412)
Q Consensus 265 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~ 342 (412)
....+.+.+... .+.+++|||++++.++.+++.|.+.|+.+..+||+++..+|..++..|+.|+..|+|+|+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344444444432 456899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccC-----CCChhhHHHhhhhcccCCCCceEEEEecc---------CcHHHHHHHHHHhccccccCChhh
Q 015158 343 DVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 343 d~~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
|+|.+++|++++. |.+...|+||+||+||. ..|.+++|.+. .+....+.++..|+.....+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998764 67999999999999996 78999999984 466777888999999998888765
No 133
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.1e-19 Score=174.02 Aligned_cols=316 Identities=16% Similarity=0.184 Sum_probs=213.4
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|.-..-.+..|+ +..+.||-|||+++.++++-....+ ..|-|++.+.-|+..-++++..++..+|++
T Consensus 76 G~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~G---kgVhVVTvNdYLA~RDae~mg~vy~fLGLs 149 (925)
T PRK12903 76 GKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTG---KGVIVSTVNEYLAERDAEEMGKVFNFLGLS 149 (925)
T ss_pred CCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcC---CceEEEecchhhhhhhHHHHHHHHHHhCCc
Confidence 665 8999998887777774 7899999999999988776443333 468888999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-------CCCCceEEEEeCCchhh-ccC------------
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-------RPDNIRIFVLDEADEML-SRG------------ 197 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-------~~~~~~~iiiDE~h~~~-~~~------------ 197 (412)
+.+...+........ .-.++|+++|...|---+.+... ..+.+.+.|+||++.++ +..
T Consensus 150 vG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~ 227 (925)
T PRK12903 150 VGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSN 227 (925)
T ss_pred eeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCCCcc
Confidence 998887655443333 34579999998877443322222 23567789999999753 110
Q ss_pred ---cHHHHHHHHHhCC----------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLLP---------------------------------------------------------------- 210 (412)
Q Consensus 198 ---~~~~~~~i~~~~~---------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 228 ~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~d 307 (925)
T PRK12903 228 DSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRD 307 (925)
T ss_pred chHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEEC
Confidence 1111111111111
Q ss_pred ----------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCCCe
Q 015158 211 ----------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNKPV 238 (412)
Q Consensus 211 ----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 238 (412)
--.++.|||+|......++. ..++-.+
T Consensus 308 g~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~-~iY~l~V 386 (925)
T PRK12903 308 GKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFI-DIYNMRV 386 (925)
T ss_pred CEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHH-HHhCCCE
Confidence 01356777777755444433 3333332
Q ss_pred E-EEecCCccccCCceEEEEEeccchhhHHHHHHHHH-hc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHH
Q 015158 239 R-ILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE-TL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 315 (412)
Q Consensus 239 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 315 (412)
. +...........-..+ +.....+...+.+-+. .+ .+.++||.|.|++..+.+++.|.+.|+...++++.....
T Consensus 387 v~IPTnkP~~R~D~~d~i---y~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~ 463 (925)
T PRK12903 387 NVVPTNKPVIRKDEPDSI---FGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAR 463 (925)
T ss_pred EECCCCCCeeeeeCCCcE---EEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhh
Confidence 2 2222211111111111 1222334444444333 33 557999999999999999999999999999999864432
Q ss_pred HHHHHHHHHhcC-CCcEEEEcCCCcCCCCCCCC--------CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 316 TRDIIMREFRSG-SSRVLITTDLLARGIDVQQV--------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 316 ~r~~~~~~f~~g-~~~vlv~t~~~~~G~d~~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
+ ..++. ..| ...|.|+|+++++|.|+.-- -|||....+.|...-.|..||+||-|.+|.+-.|++-.|
T Consensus 464 E-A~IIa--~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 464 E-AEIIA--KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred H-HHHHH--hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 2 22332 556 45699999999999998732 289999999999999999999999999999998888776
Q ss_pred HH
Q 015158 387 ER 388 (412)
Q Consensus 387 ~~ 388 (412)
.-
T Consensus 541 ~L 542 (925)
T PRK12903 541 QL 542 (925)
T ss_pred HH
Confidence 53
No 134
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=6.2e-21 Score=177.48 Aligned_cols=320 Identities=18% Similarity=0.202 Sum_probs=213.2
Q ss_pred CCCCChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 58 GFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
++. |.+||.-.++++. .+-++|+...+|-|||...+. .+..+......+.-|||||...| +.|.+++.+||+
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIa-FlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP- 472 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIA-FLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP- 472 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHH-HHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC-
Confidence 444 8999999988865 356789999999999976543 33344333335579999999776 458999999997
Q ss_pred cCcEEEEEEcCcchHHHH--HHh--cCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCCchhhccCcHHHHHHHHHh
Q 015158 134 LGVKVHACVGGTSVREDQ--RIL--SSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQL 208 (412)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~--~~~--~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~ 208 (412)
.+.+..++|........ ... ..+++|+++||.....--... -+...+++++|+||.|.+.+.. ...+..+..
T Consensus 473 -sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~- 549 (941)
T KOG0389|consen 473 -SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMS- 549 (941)
T ss_pred -ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcc-
Confidence 57788888877543331 112 247899999997664211111 1123468899999999877665 333333332
Q ss_pred CCCCceEEEEeecCCh-HHHHHHHHh------------------c-----------------------------------
Q 015158 209 LPPKIQVGVFSATMPP-EALEITRKF------------------M----------------------------------- 234 (412)
Q Consensus 209 ~~~~~~~i~~SAT~~~-~~~~~~~~~------------------~----------------------------------- 234 (412)
++ ....+++|+||-. ++.+++.-+ +
T Consensus 550 I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR~ 628 (941)
T KOG0389|consen 550 IN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRRL 628 (941)
T ss_pred cc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22 3346889999741 111111000 0
Q ss_pred ---------CCCeEE---EecC-------------------Cccc--cCC----------------ceEEEE--------
Q 015158 235 ---------NKPVRI---LVKR-------------------DELT--LEG----------------IKQFHV-------- 257 (412)
Q Consensus 235 ---------~~~~~~---~~~~-------------------~~~~--~~~----------------~~~~~~-------- 257 (412)
.+...+ .... .... ..+ ++.+|.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 000000 0000 0000 000 000000
Q ss_pred ------------------------------------------Eec----cchhhHHHHHHHHHhc--CCCcEEEEEcchh
Q 015158 258 ------------------------------------------NVE----KEEWKLETLCDLYETL--AITQSVIFVNTRR 289 (412)
Q Consensus 258 ------------------------------------------~~~----~~~~~~~~l~~~~~~~--~~~k~lif~~~~~ 289 (412)
.+. ....+...|..++.+. .++++|||.+.-.
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 000 0123556666666664 3379999999999
Q ss_pred HHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhh
Q 015158 290 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SR-VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 367 (412)
Q Consensus 290 ~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 367 (412)
-.+-+.-.|..+++....+.|.+.-.+|..++..|...+ +. +|++|.+.+.|||+..+++||+++..+++-.=.|+-.
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 999999999999999999999999999999999999864 33 5678999999999999999999999999999999999
Q ss_pred hcccCCCCce--EEEEeccC
Q 015158 368 RSGRFGRKGV--AINFVTRD 385 (412)
Q Consensus 368 R~~R~g~~g~--~~~~~~~~ 385 (412)
|++|.|+... ++.+++.+
T Consensus 869 RcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred HHHhhCCcceeEEEEEEecC
Confidence 9999998665 45555554
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.84 E-value=1.3e-18 Score=167.64 Aligned_cols=319 Identities=17% Similarity=0.153 Sum_probs=211.5
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+. |++.|.-+.-.+.+| -+..+.||.|||+++.++++-.... +..+-|++++..|+.+-++.+..+...+|+
T Consensus 73 lG~r-~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCCC-CCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 3666 888998887666655 4899999999999998887543333 347999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-------CCCCceEEEEeCCchhh-ccC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-------RPDNIRIFVLDEADEML-SRG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-------~~~~~~~iiiDE~h~~~-~~~----------- 197 (412)
.+.+..++.+..... ..-.++|+++|...|---+.+..+ ..+.+.+.|+||++.++ +..
T Consensus 147 svg~i~~~~~~~err--~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~~ 224 (870)
T CHL00122 147 TVGLIQEGMSSEERK--KNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSK 224 (870)
T ss_pred ceeeeCCCCChHHHH--HhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCCc
Confidence 999988776654433 334578999998766322222221 23567899999999753 110
Q ss_pred ----cHHHHHHHHHhCC---------------------------------------------------------------
Q 015158 198 ----FKDQIYDIFQLLP--------------------------------------------------------------- 210 (412)
Q Consensus 198 ----~~~~~~~i~~~~~--------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 225 ~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~ 304 (870)
T CHL00122 225 TNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIVR 304 (870)
T ss_pred cchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 0000000111000
Q ss_pred -----------------------------------------------------CCceEEEEeecCChHHHHHHHHhcCCC
Q 015158 211 -----------------------------------------------------PKIQVGVFSATMPPEALEITRKFMNKP 237 (412)
Q Consensus 211 -----------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~ 237 (412)
--.++.|||+|..... ..+...++-.
T Consensus 305 dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~-~Ef~~iY~l~ 383 (870)
T CHL00122 305 NNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEE-LEFEKIYNLE 383 (870)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHH-HHHHHHhCCC
Confidence 0136788888886543 3344455444
Q ss_pred eEEE-ecCCccccCCceEEEEEeccchhhHH-HHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCH
Q 015158 238 VRIL-VKRDELTLEGIKQFHVNVEKEEWKLE-TLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ 314 (412)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 314 (412)
+... ........ .... ........+.. .+.++...+ .+.|+||-|.|++..+.+++.|.+.|+...++++....
T Consensus 384 vv~IPtnkp~~R~-d~~d--~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 384 VVCIPTHRPMLRK-DLPD--LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred EEECCCCCCccce-eCCC--eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 4332 22211111 1111 11222233434 334444444 45799999999999999999999999999999986322
Q ss_pred -HHHHHHHHHHhcC-CCcEEEEcCCCcCCCCCCCC---------------------------------------------
Q 015158 315 -NTRDIIMREFRSG-SSRVLITTDLLARGIDVQQV--------------------------------------------- 347 (412)
Q Consensus 315 -~~r~~~~~~f~~g-~~~vlv~t~~~~~G~d~~~~--------------------------------------------- 347 (412)
+.-..++. ..| ...|.|+|+++++|.|+.=-
T Consensus 461 ~~~EA~IIA--~AG~~G~VTIATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (870)
T CHL00122 461 VRRESEIVA--QAGRKGSITIATNMAGRGTDIILGGNPEFKLKKELYDLLLSYKSNEKISTISQNFLNILNSLKNDLKFL 538 (870)
T ss_pred chhHHHHHH--hcCCCCcEEEeccccCCCcCeecCCchhHHHHHHHhhhhcccccccccccccccchhhhhhcccchhhh
Confidence 22233444 355 45699999999999996511
Q ss_pred -------------------------------------------------------CEEEEccCCCChhhHHHhhhhcccC
Q 015158 348 -------------------------------------------------------SLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 348 -------------------------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
-+||-.+...|...=.|..||+||-
T Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~V~~~GGL~VIgTErheSrRIDnQLrGRaGRQ 618 (870)
T CHL00122 539 SLSDFENLKILNEASEISIPKNSYQLSLRFLYNELLEKYKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQ 618 (870)
T ss_pred cccccccccccccccccccccchhhhhhhhHHHHHHHHHHHHhhhhHHHHHHcCCCEEEecCcCchHHHHHHHhccccCC
Confidence 1455666777888889999999999
Q ss_pred CCCceEEEEeccCcHHH
Q 015158 373 GRKGVAINFVTRDDERM 389 (412)
Q Consensus 373 g~~g~~~~~~~~~~~~~ 389 (412)
|.||.+-.|++-.|.-.
T Consensus 619 GDPG~s~f~lSLED~l~ 635 (870)
T CHL00122 619 GDPGSSRFFLSLEDNLL 635 (870)
T ss_pred CCCCcceEEEEeccHHH
Confidence 99999999988776643
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=7.7e-18 Score=170.84 Aligned_cols=109 Identities=13% Similarity=0.196 Sum_probs=83.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC--CCEEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 352 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~--~~~vi~ 352 (412)
..+++||+++|.+..+.+++.|..... ....+.-+++...|.+++++|++++-.||++|..+.+|||+|+ +++||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 457999999999999999999976422 1222322333345789999999988889999999999999996 588888
Q ss_pred ccCCCC------------------------------hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 353 YDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 353 ~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
.+.|+. ...+.|.+||+.|...+..++++++..
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 887742 223589999999997765566666665
No 137
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=162.71 Aligned_cols=351 Identities=15% Similarity=0.099 Sum_probs=237.1
Q ss_pred HHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc--
Q 015158 55 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD-- 132 (412)
Q Consensus 55 ~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~-- 132 (412)
..+.-...+.+|.+++..+.+|++.++.-.+.+||++++..+....+... +....+++.|+.++++...+.+.-...
T Consensus 280 ~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~V~~~~I 358 (1034)
T KOG4150|consen 280 NKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC-HATNSLLPSEMVEHLRNGSKGQVVHVEVI 358 (1034)
T ss_pred hcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC-cccceecchhHHHHhhccCCceEEEEEeh
Confidence 33444568899999999999999999999999999999988777655433 344688999999988766543211100
Q ss_pred -ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC----CCCceEEEEeCCchhhccC---cHHHHHH
Q 015158 133 -YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLR----PDNIRIFVLDEADEMLSRG---FKDQIYD 204 (412)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~----~~~~~~iiiDE~h~~~~~~---~~~~~~~ 204 (412)
...-.+.-...+............+..++++.+...........+. .-+..+++.||+|.+.... ....++.
T Consensus 359 ~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 359 KARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRA 438 (1034)
T ss_pred hhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHH
Confidence 0011122223333333444445567789999998876544432222 2234579999999754321 1233444
Q ss_pred HHHhC-----CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccc--------hhhHHHHHH
Q 015158 205 IFQLL-----PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKE--------EWKLETLCD 271 (412)
Q Consensus 205 i~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~ 271 (412)
+.+.+ ..+.+++-.+||+.... .....+++-.....+.. +-.+.+-++++.+.++. +.+......
T Consensus 439 L~~L~~~F~~~~~~~~~~~~~~~K~~~-~~~~~~~~~~E~~Li~~-DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~ 516 (1034)
T KOG4150|consen 439 LSDLIKGFEASINMGVYDGDTPYKDRT-RLRSELANLSELELVTI-DGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSH 516 (1034)
T ss_pred HHHHHHHHHhhcCcceEeCCCCcCCHH-HHHHHhcCCcceEEEEe-cCCCCccceEEEeCCCCCCcchhhhhhHHHHHHH
Confidence 44333 24678888899986554 44445555443322222 22334455666655442 112222222
Q ss_pred HHHhc--CCCcEEEEEcchhHHHHHHHHHhc----CCC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCC
Q 015158 272 LYETL--AITQSVIFVNTRRKVDWLTDKMRS----RDH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341 (412)
Q Consensus 272 ~~~~~--~~~k~lif~~~~~~~~~~~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G 341 (412)
++.+. .+-++|-||++++-|+-+....++ .+. .+..+.|+...++|.++...+-.|++.-+|+|++++-|
T Consensus 517 ~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELG 596 (1034)
T KOG4150|consen 517 LFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELG 596 (1034)
T ss_pred HHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhc
Confidence 22222 235899999999999876554443 232 35678899999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEe--ccCcHHHHHHHHHHhccccccCChhh
Q 015158 342 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV--TRDDERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 342 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
+|+...+.|++.+.|.|.+.+.|..||+||++++..++.+. .+-|..++.+.+..+...+.++..++
T Consensus 597 IDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~ 665 (1034)
T KOG4150|consen 597 IDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDS 665 (1034)
T ss_pred cccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEec
Confidence 99999999999999999999999999999999887655544 45577788888888888777766655
No 138
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.83 E-value=2.2e-17 Score=157.43 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEcCCCcCCCCC
Q 015158 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITTDLLARGIDV 344 (412)
Q Consensus 269 l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~t~~~~~G~d~ 344 (412)
+..++.. ..|+++|.+.|.+..+.+++.|...-.-...+.|+.+ .+..++++|++ |...||++|..+.+|||+
T Consensus 462 ~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 462 TAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 3344443 4479999999999999999999764223344445432 34668888887 468899999999999999
Q ss_pred --------C--CCCEEEEccCCCCh-------------------------hhHHHhhhhcccCCCC--ceEEEEeccC
Q 015158 345 --------Q--QVSLVINYDLPTQP-------------------------ENYLHRIGRSGRFGRK--GVAINFVTRD 385 (412)
Q Consensus 345 --------~--~~~~vi~~~~~~s~-------------------------~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 385 (412)
| .+++||+...|+.+ -.+.|.+||..|...+ ..++.++++.
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 38889988877432 2468999999998766 4455555554
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.81 E-value=7.7e-19 Score=137.69 Aligned_cols=118 Identities=44% Similarity=0.721 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHhcC--CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCC
Q 015158 264 WKLETLCDLYETLA--ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341 (412)
Q Consensus 264 ~~~~~l~~~~~~~~--~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G 341 (412)
.+...+..++.... .+++||||++...++.+++.|.+.+..+..+||+++..+|..+.+.|.++...++++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 56677777777664 6899999999999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEE
Q 015158 342 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 381 (412)
Q Consensus 342 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 381 (412)
+|+|.+++|++++.+++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998888764
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.80 E-value=3.8e-18 Score=135.78 Aligned_cols=144 Identities=41% Similarity=0.570 Sum_probs=112.4
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+++++.+|||+|||.+++..+....... ...+++|++|+..++.|+.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 3679999999999999988888776542 3458999999999999999988887654 5777777776665554444566
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
..+|+++|++.+.............++++|+||+|.+....................+++++||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999888876655566789999999999877654443333445556788899999997
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.6e-17 Score=157.48 Aligned_cols=274 Identities=18% Similarity=0.173 Sum_probs=176.4
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|.. |++.|.-.--.+..|+ +..+.||-|||+++.++++-....+ ..+-||+++.-|+..-++++..+....|+.
T Consensus 83 G~r-~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~G---kgVhVVTvNdYLA~RDae~m~~vy~~LGLt 156 (939)
T PRK12902 83 GMR-HFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTG---KGVHVVTVNDYLARRDAEWMGQVHRFLGLS 156 (939)
T ss_pred CCC-cchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcC---CCeEEEeCCHHHHHhHHHHHHHHHHHhCCe
Confidence 665 8889988887777665 8899999999999988877654444 479999999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHH-----HHHH--cCCCCCCCceEEEEeCCchhh-ccC------------
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVF-----DMLR--RQSLRPDNIRIFVLDEADEML-SRG------------ 197 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-----~~~~--~~~~~~~~~~~iiiDE~h~~~-~~~------------ 197 (412)
+.+..++..... +...-.++|+++|...|- ..+. ......+.+.+.|+||++.++ +..
T Consensus 157 vg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~ 234 (939)
T PRK12902 157 VGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVER 234 (939)
T ss_pred EEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCcc
Confidence 999877665433 334456899999998772 2111 112234678899999999753 110
Q ss_pred ---cHHHHHHHHHhCC----------------------------------------------------------------
Q 015158 198 ---FKDQIYDIFQLLP---------------------------------------------------------------- 210 (412)
Q Consensus 198 ---~~~~~~~i~~~~~---------------------------------------------------------------- 210 (412)
.......+...+.
T Consensus 235 ~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~ 314 (939)
T PRK12902 235 PQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDV 314 (939)
T ss_pred chHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCC
Confidence 0001111111000
Q ss_pred ----------------------------------------------------------CCceEEEEeecCChHHHHHHHH
Q 015158 211 ----------------------------------------------------------PKIQVGVFSATMPPEALEITRK 232 (412)
Q Consensus 211 ----------------------------------------------------------~~~~~i~~SAT~~~~~~~~~~~ 232 (412)
--.++.|||+|......+ +..
T Consensus 315 dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E-f~~ 393 (939)
T PRK12902 315 NYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE-FEK 393 (939)
T ss_pred eEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH-HHH
Confidence 013567777776544333 333
Q ss_pred hcCCCeE-EEecCCccccCCceEEEEEeccchhhHHHHH-HHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEec
Q 015158 233 FMNKPVR-ILVKRDELTLEGIKQFHVNVEKEEWKLETLC-DLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 309 (412)
Q Consensus 233 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~ 309 (412)
.++-.+. +...........-... ......+...+. ++...+ .+.|+||-+.|++..+.+++.|.+.|+...+++
T Consensus 394 iY~l~Vv~IPTnkP~~R~d~~d~v---y~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLN 470 (939)
T PRK12902 394 TYKLEVTVIPTNRPRRRQDWPDQV---YKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLN 470 (939)
T ss_pred HhCCcEEEcCCCCCeeeecCCCeE---EcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheee
Confidence 3333332 2222211111111111 122233444444 444443 567999999999999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHhcCC-CcEEEEcCCCcCCCCCC
Q 015158 310 GDM-DQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQ 345 (412)
Q Consensus 310 ~~~-~~~~r~~~~~~f~~g~-~~vlv~t~~~~~G~d~~ 345 (412)
..- ..+.-..|+. ..|. ..|.|+|+++++|.|+.
T Consensus 471 Ak~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 471 AKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred CCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 862 2222233444 3564 45999999999999965
No 142
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=4.6e-18 Score=152.88 Aligned_cols=280 Identities=17% Similarity=0.187 Sum_probs=184.4
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+-++-++||.||||.-++. ++... +..++..|.+-|+.+.++.+.+. |+.+..++|........+ ..
T Consensus 192 kIi~H~GPTNSGKTy~ALq----rl~~a---ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~ 258 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQ----RLKSA---KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GN 258 (700)
T ss_pred eEEEEeCCCCCchhHHHHH----HHhhh---ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CC
Confidence 3356689999999976543 44333 47899999999999999988886 788888887655322211 23
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC-CCceEEEEeecCCh-HHHHHHHHhc
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-PKIQVGVFSATMPP-EALEITRKFM 234 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~-~~~~~~~~~~ 234 (412)
.+..+-||.|+..- ...+++.|+||++.+.+...+-.|.+.+--+. .... +-+-+.- ++...+...-
T Consensus 259 ~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiH---LCGepsvldlV~~i~k~T 327 (700)
T KOG0953|consen 259 PAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIH---LCGEPSVLDLVRKILKMT 327 (700)
T ss_pred cccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhh---ccCCchHHHHHHHHHhhc
Confidence 46788888777531 24689999999999987765544444332221 1222 2222211 2222222233
Q ss_pred CCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCe-eEEecCCCC
Q 015158 235 NKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 313 (412)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~ 313 (412)
++.+.++... ...+ -...+.+..-++....|. .|+|-|++....+...+.+.+.. +.+++|+++
T Consensus 328 Gd~vev~~Ye-------------Rl~p-L~v~~~~~~sl~nlk~GD-CvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLP 392 (700)
T KOG0953|consen 328 GDDVEVREYE-------------RLSP-LVVEETALGSLSNLKPGD-CVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLP 392 (700)
T ss_pred CCeeEEEeec-------------ccCc-ceehhhhhhhhccCCCCC-eEEEeehhhHHHHHHHHHHhcCcceEEEecCCC
Confidence 3333222111 1111 112223444445544443 56677888999999999988765 999999999
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEcCCCcCCCCCCCCCEEEEccC---------CCChhhHHHhhhhcccCCC---CceEE
Q 015158 314 QNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR---KGVAI 379 (412)
Q Consensus 314 ~~~r~~~~~~f~~--g~~~vlv~t~~~~~G~d~~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~g~---~g~~~ 379 (412)
++.|.+.-..|++ ++.+|+|+|+++++|+|+ +++.||+++. +.+..+..|..||+||.|. .|.+.
T Consensus 393 PeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vT 471 (700)
T KOG0953|consen 393 PETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVT 471 (700)
T ss_pred CchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEE
Confidence 9999999999998 799999999999999999 5888887765 3567889999999999863 46665
Q ss_pred EEeccCcHHHHHHHHHHhccc
Q 015158 380 NFVTRDDERMLFDIQKFYNVV 400 (412)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~ 400 (412)
.+..++ +..+.+.++..
T Consensus 472 tl~~eD----L~~L~~~l~~p 488 (700)
T KOG0953|consen 472 TLHSED----LKLLKRILKRP 488 (700)
T ss_pred EeeHhh----HHHHHHHHhCC
Confidence 555433 33444444433
No 143
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=1.5e-18 Score=165.71 Aligned_cols=319 Identities=17% Similarity=0.180 Sum_probs=212.7
Q ss_pred CChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.+.+||.+.+.++.+ +-+.++...+|-|||...+..+...+......+..+|++|+..|.. |..++..|.. .+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaP--Sv 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAP--SV 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhcccccc--ce
Confidence 599999999988664 3578999999999997765555554444444567999999999887 7777888765 34
Q ss_pred EEEEEEcCcchHH--HHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 137 KVHACVGGTSVRE--DQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
....+.|...... ...+..++++|+++|++.+.+ .+..+..-+|.++||||.|++.+.. ..+...+...-....
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~L~t~y~~q~ 546 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAI--CKLTDTLNTHYRAQR 546 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchh--hHHHHHhhccccchh
Confidence 4445555433221 134445789999999998754 2222223467899999999987643 333333332222344
Q ss_pred EEEEeecCChHHHH------------------HHHHhcCCCeEEEec---------------------------------
Q 015158 215 VGVFSATMPPEALE------------------ITRKFMNKPVRILVK--------------------------------- 243 (412)
Q Consensus 215 ~i~~SAT~~~~~~~------------------~~~~~~~~~~~~~~~--------------------------------- 243 (412)
.+++|+||.-+... .+..+++.|..-...
T Consensus 547 RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE 626 (1157)
T KOG0386|consen 547 RLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVE 626 (1157)
T ss_pred hhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHh
Confidence 56677776311000 011111111000000
Q ss_pred -----------------------------------C--Ccc--------------------ccCCceEEEE------Eec
Q 015158 244 -----------------------------------R--DEL--------------------TLEGIKQFHV------NVE 260 (412)
Q Consensus 244 -----------------------------------~--~~~--------------------~~~~~~~~~~------~~~ 260 (412)
. ... ...++...+. .+-
T Consensus 627 ~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~ 706 (1157)
T KOG0386|consen 627 QELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLV 706 (1157)
T ss_pred hhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhHHH
Confidence 0 000 0000000000 000
Q ss_pred cchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC---CcEEEEc
Q 015158 261 KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITT 335 (412)
Q Consensus 261 ~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vlv~t 335 (412)
....+...+..++.+. .+++++.||.-..-...+..+|.=+++....+.|.+...+|...++.|+... ..+|++|
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllst 786 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLST 786 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeee
Confidence 1123455566666554 4589999999999999999999988999999999999999999999999753 3467789
Q ss_pred CCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCc
Q 015158 336 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 386 (412)
Q Consensus 336 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 386 (412)
.+.+.|+|+..+++||+++..|++....|+-.|+.|.|+...+-++....-
T Consensus 787 ragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv 837 (1157)
T KOG0386|consen 787 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV 837 (1157)
T ss_pred cccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh
Confidence 999999999999999999999999999999999999998877666665543
No 144
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=7.5e-18 Score=155.25 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=92.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhc--CCCcEE-EEcCCCcCCCCCCCCCEEEEc
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVL-ITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vl-v~t~~~~~G~d~~~~~~vi~~ 353 (412)
..+|++|..+-.....-+...|++.|.....++|.....+|..+++.|.. |...|+ ++-.+.+.|+|+-+.+|+|++
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 45788888888888888999999999999999999999999999999986 434554 556788999999999999999
Q ss_pred cCCCChhhHHHhhhhcccCCCCceEEEE
Q 015158 354 DLPTQPENYLHRIGRSGRFGRKGVAINF 381 (412)
Q Consensus 354 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 381 (412)
++.|+++--.|+..|+.|.|+...+++.
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999988776654
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=1.1e-18 Score=145.52 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=102.0
Q ss_pred ChHHHHhhhhhhhc-------CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 62 PSAIQQRGIVPFCK-------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 62 l~~~Q~~a~~~~~~-------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
|+++|.+++..+.. .+++++.+|||+|||.+++..+..... ++++++|+..|.+|+.+.+..+....
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 89999999999884 588999999999999998765554433 79999999999999999996654321
Q ss_pred CcEEEEE-----------E-cCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC-----------CCCCCceEEEEeCCc
Q 015158 135 GVKVHAC-----------V-GGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS-----------LRPDNIRIFVLDEAD 191 (412)
Q Consensus 135 ~~~~~~~-----------~-~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-----------~~~~~~~~iiiDE~h 191 (412)
...... . ................+++++|++.+........ .....+++||+||||
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 78 -YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp -EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred -hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 111110 0 1111112233345567899999999987764321 112467899999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 192 EMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
++....- +..+.. .+...+++|||||.
T Consensus 157 ~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred hcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 8765431 344444 45777999999985
No 146
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.78 E-value=7.9e-17 Score=162.47 Aligned_cols=285 Identities=14% Similarity=0.146 Sum_probs=174.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc-
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS- 155 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 155 (412)
+.++||..+|||||++.+..+-.... ....+++++|+.++.|-.|+.+.+..+........ ...+.......+.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~-~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLE-LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHh-ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 56999999999999987655544433 35678999999999999999999999865432222 2233334444444
Q ss_pred CCCcEEEeChHHHHHHHHcCC-C-CCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHH-HHH
Q 015158 156 SGVHVVVGTPGRVFDMLRRQS-L-RPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEI-TRK 232 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~-~-~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~-~~~ 232 (412)
....|+|||.++|........ . ..+.--+||+||||+- . ++..-..+...++ +...+++|+||--..... ...
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS-Q--~G~~~~~~~~~~~-~a~~~gFTGTPi~~~d~~tt~~ 424 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS-Q--YGELAKLLKKALK-KAIFIGFTGTPIFKEDKDTTKD 424 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc-c--ccHHHHHHHHHhc-cceEEEeeCCccccccccchhh
Confidence 345899999999988776531 1 1122238999999983 2 2233334444444 477999999996433333 355
Q ss_pred hcCCCeEEEecCCccccCCceEEEEEec-cc-------------------------------------------hhhH--
Q 015158 233 FMNKPVRILVKRDELTLEGIKQFHVNVE-KE-------------------------------------------EWKL-- 266 (412)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------------------------------~~~~-- 266 (412)
.++.....+.......-..+-..++... .. ....
T Consensus 425 ~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~ 504 (962)
T COG0610 425 VFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRA 504 (962)
T ss_pred hhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHH
Confidence 6666655554443332222212222111 00 0000
Q ss_pred --HHHHHHHH-hcCCCcEEEEEcchhHHHHHHHHHhcCCCe-----------------------eEEecCCCCHHHHHHH
Q 015158 267 --ETLCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHT-----------------------VSATHGDMDQNTRDII 320 (412)
Q Consensus 267 --~~l~~~~~-~~~~~k~lif~~~~~~~~~~~~~L~~~~~~-----------------------~~~~~~~~~~~~r~~~ 320 (412)
+.+..+.+ .....++++.+.++..+..+++........ ....|.. ....+...
T Consensus 505 a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 583 (962)
T COG0610 505 AKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDL 583 (962)
T ss_pred HHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhh
Confidence 11111122 223367888888888555555554332100 0000111 22233344
Q ss_pred HHHH--hcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC
Q 015158 321 MREF--RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 321 ~~~f--~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
..+| ....+++||+++++-+|+|.|.++++. ++-|.-...++|++.|+.|.
T Consensus 584 ~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 584 IKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred hhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 4443 346889999999999999999888887 66778889999999999996
No 147
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.77 E-value=1.2e-16 Score=158.66 Aligned_cols=127 Identities=13% Similarity=0.204 Sum_probs=89.0
Q ss_pred HHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHHhcCCC-cEEEEcCCCcCCCCCCC
Q 015158 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQ 346 (412)
Q Consensus 269 l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vlv~t~~~~~G~d~~~ 346 (412)
+.+++...+ ++++||++|.+..+.+.+.+...... ....+|.. .+..+++.|.++.- .++|++..+.+|+|+|+
T Consensus 471 i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 334444444 68999999999999999999886653 33444443 34478888887544 79999999999999996
Q ss_pred --CCEEEEccCCCC------------------------------hhhHHHhhhhcccCCCCceEEEEeccCcHH--HHHH
Q 015158 347 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRDDER--MLFD 392 (412)
Q Consensus 347 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~--~~~~ 392 (412)
++.||+.+.|+- ...+.|.+||+.|...+..++++++..-.. .-+.
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~ 626 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKL 626 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHH
Confidence 578888887742 446799999999986665555566654322 3344
Q ss_pred HHHHhcc
Q 015158 393 IQKFYNV 399 (412)
Q Consensus 393 ~~~~~~~ 399 (412)
+-+.+..
T Consensus 627 l~~~l~~ 633 (654)
T COG1199 627 LLDSLPP 633 (654)
T ss_pred HHHhCCC
Confidence 4444443
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=2e-16 Score=156.95 Aligned_cols=75 Identities=24% Similarity=0.216 Sum_probs=63.2
Q ss_pred HCCCCCChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 56 AYGFEKPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.++|..+||.|++.+..+. .++++++.+|||+|||++.+.+++..........+++|.+.|.+-..|..+++++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 3678877999998887765 47899999999999999999999887654434468999999999999999999884
No 149
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.76 E-value=1.2e-16 Score=156.25 Aligned_cols=335 Identities=16% Similarity=0.120 Sum_probs=198.3
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhc--------CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 51 LRGIYAYGFEKPSAIQQRGIVPFCK--------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 51 ~~~l~~~~~~~l~~~Q~~a~~~~~~--------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
.+.+....-..-..||-+|+..+.. |--++..|.||+|||++=. -|+..+.....+.+..|..-.++|.-|
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNA-RImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANA-RAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHH-HHHHHhCCCCCCceEEEEccccceecc
Confidence 3444433444457799999998775 3345668999999998754 344455566677789999999999988
Q ss_pred HHHHHHHhhcccCcEEEEEEcCcchHHHHH-------------------------------------------Hhc----
Q 015158 123 IEKVMRALGDYLGVKVHACVGGTSVREDQR-------------------------------------------ILS---- 155 (412)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~---- 155 (412)
+-+.+++-....+....++.|+.......+ .+.
T Consensus 477 TGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k 556 (1110)
T TIGR02562 477 TGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDK 556 (1110)
T ss_pred chHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChh
Confidence 888887754444445555555443222110 000
Q ss_pred ----CCCcEEEeChHHHHHHHHcCC--CC-CC----CceEEEEeCCchhhccCcHHHHHHHHHh-CCCCceEEEEeecCC
Q 015158 156 ----SGVHVVVGTPGRVFDMLRRQS--LR-PD----NIRIFVLDEADEMLSRGFKDQIYDIFQL-LPPKIQVGVFSATMP 223 (412)
Q Consensus 156 ----~~~~iii~T~~~l~~~~~~~~--~~-~~----~~~~iiiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~ 223 (412)
-...++|+|++.++....... .. .. .-+.||+||+|-+....+ ..+..++.. -.-+.++++||||++
T Consensus 557 ~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP 635 (1110)
T TIGR02562 557 EKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLP 635 (1110)
T ss_pred hhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 013699999999987763211 11 01 125799999997654443 333333331 123678999999999
Q ss_pred hHHHHHHHHh-----------cCC---CeEEEecC--C-cc----------------------------ccCCceEEEEE
Q 015158 224 PEALEITRKF-----------MNK---PVRILVKR--D-EL----------------------------TLEGIKQFHVN 258 (412)
Q Consensus 224 ~~~~~~~~~~-----------~~~---~~~~~~~~--~-~~----------------------------~~~~~~~~~~~ 258 (412)
+.....+..- .+. +..+.... + .. .+.--.-....
T Consensus 636 ~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~ 715 (1110)
T TIGR02562 636 PALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEee
Confidence 8765544322 232 22111111 0 00 01001111122
Q ss_pred eccch----hhHHHHH--------HHHHhc----C-CCc----EEEEEcchhHHHHHHHHHhcC------CCeeEEecCC
Q 015158 259 VEKEE----WKLETLC--------DLYETL----A-ITQ----SVIFVNTRRKVDWLTDKMRSR------DHTVSATHGD 311 (412)
Q Consensus 259 ~~~~~----~~~~~l~--------~~~~~~----~-~~k----~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~ 311 (412)
++... .....+. .+-..+ + .+| .+|-.+++..+-.+++.|... .+.+.+||+.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 22211 0111111 111211 1 122 478888888777777777543 3457889999
Q ss_pred CCHHHHHHHHHHH----------------------hc----CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHh
Q 015158 312 MDQNTRDIIMREF----------------------RS----GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 365 (412)
Q Consensus 312 ~~~~~r~~~~~~f----------------------~~----g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 365 (412)
.....|..++++. .+ +...|+|+|++++.|+|+ +.+.+| .-+.+...++|+
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~ 872 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQL 872 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHH
Confidence 9888887777654 12 356799999999999998 466664 346778999999
Q ss_pred hhhcccCCCC--ceEEEEeccCcHHHH
Q 015158 366 IGRSGRFGRK--GVAINFVTRDDERML 390 (412)
Q Consensus 366 ~GR~~R~g~~--g~~~~~~~~~~~~~~ 390 (412)
+||+.|.|.. +..-+++...+.+.+
T Consensus 873 aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 873 AGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred hhcccccccCCCCCCcEEEeHhHHHHh
Confidence 9999998643 333344445555544
No 150
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=4.1e-18 Score=120.01 Aligned_cols=78 Identities=47% Similarity=0.814 Sum_probs=75.4
Q ss_pred HHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCC
Q 015158 296 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 373 (412)
Q Consensus 296 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g 373 (412)
+.|+..++.+..+||+++..+|..+++.|.+++..+||+|+++++|+|+|.+++|+++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999986
No 151
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.74 E-value=1.2e-15 Score=135.62 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=94.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
.-|.|||.+.-...+-+.-.|.+.|..++.+.|+|++..|...++.|++. ... +|++-.+.+..+|+..+.+|+++++
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 35789999999999999999999999999999999999999999999986 444 4566789999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCC--ceEEEEeccC
Q 015158 356 PTQPENYLHRIGRSGRFGRK--GVAINFVTRD 385 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~ 385 (412)
.|+++.-.|.-.|+.|.|+. -.++.|+-++
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999999964 4566666554
No 152
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.73 E-value=5.3e-15 Score=145.75 Aligned_cols=105 Identities=20% Similarity=0.358 Sum_probs=78.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHh----cCCCcEEEEcCCCcCCCCCCC--CCE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQ--VSL 349 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vlv~t~~~~~G~d~~~--~~~ 349 (412)
..+.++|+++|.+..+.+++.|... +.. ....|. ..+.++++.|+ +++..||++|..+.+|||+|+ +++
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~ 608 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQ 608 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEE
Confidence 3456999999999999999999743 333 333443 24667776666 467789999999999999996 788
Q ss_pred EEEccCCCC-h-----------------------------hhHHHhhhhcccCCCCceEEEEeccC
Q 015158 350 VINYDLPTQ-P-----------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 350 vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
||+.+.|+. + ..+.|.+||+.|...+..+++++++.
T Consensus 609 vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 609 VIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 998887742 1 14689999999997665566666665
No 153
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.72 E-value=1.5e-16 Score=146.89 Aligned_cols=121 Identities=21% Similarity=0.326 Sum_probs=102.9
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcCCCcCC
Q 015158 265 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARG 341 (412)
Q Consensus 265 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~t~~~~~G 341 (412)
+...|.+++.+. .+.++|+|++-.+-..-+.++|.-+++....+.|.....+|..++++|+..++- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 444455555554 346899999999999999999999999999999999999999999999997655 56789999999
Q ss_pred CCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCce--EEEEeccC
Q 015158 342 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRD 385 (412)
Q Consensus 342 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~ 385 (412)
+|+..+++||+++..|++..-.|++.|+.|.|+... +|-++...
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 999999999999999999999999999999997654 55555554
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=6.7e-16 Score=150.40 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHh-c-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCCCcC
Q 015158 264 WKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDLLAR 340 (412)
Q Consensus 264 ~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~~~~ 340 (412)
.+...+.+-+.. + .+.|+||-+.|++..+.+++.|...|+...++++.....+. .|+. ..| ...|.|+|+++++
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA--~AG~~GaVTIATNMAGR 688 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVA--EAGQPGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHH--hcCCCCcEEEeccCcCC
Confidence 344444444333 3 55799999999999999999999999998888886543332 3333 345 4459999999999
Q ss_pred CCCCC--------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 341 GIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 341 G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
|.|+. +--+||....+.|...-.|..||+||-|.+|.+-.|++-.|.-
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 99988 4568888999999999999999999999999999998877653
No 155
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.71 E-value=8.6e-16 Score=148.51 Aligned_cols=108 Identities=17% Similarity=0.244 Sum_probs=96.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
+.++|||.+-.+-.+.+...|+-+|+-...+.|..+-++|..++++|+.+. .+.|++|...+.|||+.++++||+|+.
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 357899999999999999999999999999999999999999999999874 467889999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCc--eEEEEeccC
Q 015158 356 PTQPENYLHRIGRSGRFGRKG--VAINFVTRD 385 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~ 385 (412)
.|++.--.|.-.|+.|.|+.. ..|-+++..
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 999999999999999998754 456666654
No 156
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.71 E-value=2.4e-16 Score=153.68 Aligned_cols=309 Identities=16% Similarity=0.197 Sum_probs=204.8
Q ss_pred ChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hhcccCcEEE
Q 015158 62 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-LGDYLGVKVH 139 (412)
Q Consensus 62 l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~ 139 (412)
.++.|.+.++.+.+ +.++++.+|+|||||.|+.++++.. ....+++++.|..+.+..+++.+.. +....|..+.
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~----~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRP----DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCC----ccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 47889999998876 4688999999999999998888762 2445899999999988777666644 5555688888
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----cHHHHHHHHHhCCCCce
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----FKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----~~~~~~~i~~~~~~~~~ 214 (412)
.++|....... .....+|+|+||++|..+ . ..+.+++.|+||.|.+.+.. ..-.+..+...+-++.+
T Consensus 1220 ~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir 1291 (1674)
T KOG0951|consen 1220 KLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIR 1291 (1674)
T ss_pred ecCCccccchH---HhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhhee
Confidence 88887764332 334458999999999665 2 45678999999999876321 00125566666667888
Q ss_pred EEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccch--h----h-HHHHHHHHHhc-CCCcEEEEEc
Q 015158 215 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEE--W----K-LETLCDLYETL-AITQSVIFVN 286 (412)
Q Consensus 215 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~-~~~l~~~~~~~-~~~k~lif~~ 286 (412)
++++|..+.+. .+. ........+.... ...+.........+.... . . ...+..+.+.. ..++.+||++
T Consensus 1292 ~v~ls~~lana-~d~--ig~s~~~v~Nf~p-~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p 1367 (1674)
T KOG0951|consen 1292 VVALSSSLANA-RDL--IGASSSGVFNFSP-SVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLP 1367 (1674)
T ss_pred EEEeehhhccc-hhh--ccccccceeecCc-ccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEec
Confidence 99999987542 222 1111111122222 111222222222222111 1 1 11222222221 4478999999
Q ss_pred chhHHHHHHHHHhcC----------------------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 287 TRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 287 ~~~~~~~~~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
++++|..++.-|-.. .....+-|.++++.+..-+-.-|..|.+.|+|.... ..|+-.
T Consensus 1368 ~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~ 1446 (1674)
T KOG0951|consen 1368 TRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKL 1446 (1674)
T ss_pred cchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccc
Confidence 999987665444211 122333388899999999999999999999988776 667776
Q ss_pred CCCCEEEEcc-----------CCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHH
Q 015158 345 QQVSLVINYD-----------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 391 (412)
Q Consensus 345 ~~~~~vi~~~-----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 391 (412)
. .+.||.++ .+.+.+...||.|++.| .|+|+++....+...++
T Consensus 1447 ~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yyk 1500 (1674)
T KOG0951|consen 1447 K-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYK 1500 (1674)
T ss_pred c-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHH
Confidence 5 34444333 35678999999999999 58899998888877543
No 157
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.70 E-value=6e-15 Score=140.93 Aligned_cols=293 Identities=12% Similarity=0.103 Sum_probs=187.9
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
+.-.+|.+|+|||||....-++...+. .+..+++++..+++|+.+..+.++...- .++.. ....+. .....
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~-Y~d~~~-----~~i~~ 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVN-YLDSDD-----YIIDG 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCC-Cccee-eecccc-----ccccc
Confidence 345688999999999887776665543 2446899999999999999998876421 12221 111110 11111
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcH-------HHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFK-------DQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~-------~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
..++-++++.++|.+... ..++++|+||+||+-.+...-+. ..+..+...+.....+|++-|++.....+
T Consensus 120 ~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred cccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 245788888898876542 23457899999999876644222 22233445556788899999999999999
Q ss_pred HHHHhcCCCeEEEecCCccccCCceEEEEEecc-----------------------------------chhhHHHHHHHH
Q 015158 229 ITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK-----------------------------------EEWKLETLCDLY 273 (412)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~ 273 (412)
+++.+.+......+..+...+.-........+. ..........+.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 999876544333222221111000000000000 011223444444
Q ss_pred Hhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC--CCEE
Q 015158 274 ETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLV 350 (412)
Q Consensus 274 ~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~--~~~v 350 (412)
... .++++.||+++...++.+++........+.++++.-+..+ + +. -++++|++-|+++..|+++.. .+.|
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 443 4467888999999999999999888889999988755442 2 21 457999999999999999864 4445
Q ss_pred EEccCC----CChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 351 INYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 351 i~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
+.+-.| .++.+..|++||+-.. ...+.+++++....
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~~ 390 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASGA 390 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecccc
Confidence 444222 3456789999999444 56788888877543
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.65 E-value=2.6e-14 Score=138.38 Aligned_cols=138 Identities=19% Similarity=0.189 Sum_probs=97.6
Q ss_pred EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHH----HHHHhc
Q 015158 80 IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRE----DQRILS 155 (412)
Q Consensus 80 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 155 (412)
+..+-+|||||.+|+-.+...+..++ .+|+++|...|..|+.+.|++... +..+..++++.+... +.....
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk---~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR---GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC---eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 33344699999999988888777654 899999999999999999998653 256778887776553 345556
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----c-HHHHHHHHHhCCCCceEEEEeecCChHHHHH
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----F-KDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 229 (412)
+...|+|+|-..++ ..+.++++||+||=|.-.-.. | ...+-.... ...+..+|+.||||+-+....
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra-~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA-HQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH-HHcCCcEEEECCCCCHHHHHH
Confidence 77899999944443 234689999999999643111 1 123333333 335788999999998765444
Q ss_pred H
Q 015158 230 T 230 (412)
Q Consensus 230 ~ 230 (412)
.
T Consensus 311 ~ 311 (665)
T PRK14873 311 V 311 (665)
T ss_pred H
Confidence 3
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.64 E-value=2.6e-14 Score=136.06 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=98.5
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcC----------------------CCeeEEecCCCCHHHHHHH
Q 015158 265 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDII 320 (412)
Q Consensus 265 ~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~----------------------~~~~~~~~~~~~~~~r~~~ 320 (412)
++..|.++++.. .++|.|||.+|.....-+..+|.-. |.+...+.|......|.+.
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344555665554 4479999999999888888877521 5678889999999999999
Q ss_pred HHHHhcC-C---CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEe
Q 015158 321 MREFRSG-S---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 382 (412)
Q Consensus 321 ~~~f~~g-~---~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 382 (412)
.++|++. + ...||+|.+.+-|+|+-.++.||+++..|++..-.|.|=|+-|.|+...||+|=
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 9999874 2 248899999999999999999999999999999999999999999887777653
No 160
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.63 E-value=1.2e-15 Score=108.80 Aligned_cols=81 Identities=41% Similarity=0.749 Sum_probs=77.1
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC
Q 015158 293 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 293 ~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
.+++.|+..+..+..+||+++..+|..+++.|.++...++++|+++++|+|+|.+++|++++++++...+.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 015158 373 G 373 (412)
Q Consensus 373 g 373 (412)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.57 E-value=4.8e-13 Score=138.31 Aligned_cols=318 Identities=19% Similarity=0.201 Sum_probs=205.9
Q ss_pred CCChHHHHhhhhhhhc-----CccEEEECCCCCCchhHhHHHHHHhhccCCC-ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 60 EKPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYGLV-ECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
..++++|.+.++.+.. +.+.++...+|.|||...+..+......... .+..+++||+ +++.+|.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 4589999999988662 5678889999999998776666542222222 4579999996 6677799999888764
Q ss_pred cCcEEEEEEcCcc-----hHHHHHHhcC----CCcEEEeChHHHHHHH-HcCCCCCCCceEEEEeCCchhhccCcHHHHH
Q 015158 134 LGVKVHACVGGTS-----VREDQRILSS----GVHVVVGTPGRVFDML-RRQSLRPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 134 ~~~~~~~~~~~~~-----~~~~~~~~~~----~~~iii~T~~~l~~~~-~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
... +...+|... .......... .++++++|++.+.... ....+....++.+|+||+|.+.+.. .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 443 666666554 1222222222 2789999999997732 1223445678999999999976543 22222
Q ss_pred HHHHhCCCCceEEEEeecCChHHHH----HHH----------------HhcCCCeEEEec--------------------
Q 015158 204 DIFQLLPPKIQVGVFSATMPPEALE----ITR----------------KFMNKPVRILVK-------------------- 243 (412)
Q Consensus 204 ~i~~~~~~~~~~i~~SAT~~~~~~~----~~~----------------~~~~~~~~~~~~-------------------- 243 (412)
.+. .+.... .+.+|+||-.+-.. .+. ..+..+......
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 571 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELLRKLLSP 571 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Confidence 222 332222 37777776211000 000 000000000000
Q ss_pred ------CCc--c----------------------------c-------------cCC----------------------c
Q 015158 244 ------RDE--L----------------------------T-------------LEG----------------------I 252 (412)
Q Consensus 244 ------~~~--~----------------------------~-------------~~~----------------------~ 252 (412)
... . . ... +
T Consensus 572 f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~ 651 (866)
T COG0553 572 FILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQI 651 (866)
T ss_pred HhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHh
Confidence 000 0 0 000 0
Q ss_pred eE-EEEEecc---------------------------ch-hhHHHHHHHH-Hhc--CCC--cEEEEEcchhHHHHHHHHH
Q 015158 253 KQ-FHVNVEK---------------------------EE-WKLETLCDLY-ETL--AIT--QSVIFVNTRRKVDWLTDKM 298 (412)
Q Consensus 253 ~~-~~~~~~~---------------------------~~-~~~~~l~~~~-~~~--~~~--k~lif~~~~~~~~~~~~~L 298 (412)
.. ....... .. .+...+.+++ ... ... ++++|++......-+...+
T Consensus 652 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l 731 (866)
T COG0553 652 CNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYL 731 (866)
T ss_pred ccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHH
Confidence 00 0000000 00 3455555666 222 334 8999999999999999999
Q ss_pred hcCCCeeEEecCCCCHHHHHHHHHHHhcC--CCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCc
Q 015158 299 RSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 376 (412)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g 376 (412)
+..++....++|.++...|...+++|.++ ...+++++.+.+.|+|+..+++||++++.|++....|+..|+.|.|+..
T Consensus 732 ~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~ 811 (866)
T COG0553 732 KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKR 811 (866)
T ss_pred HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcc
Confidence 99998899999999999999999999996 3446667789999999999999999999999999999999999999876
Q ss_pred eEEEEe
Q 015158 377 VAINFV 382 (412)
Q Consensus 377 ~~~~~~ 382 (412)
.+.++-
T Consensus 812 ~v~v~r 817 (866)
T COG0553 812 PVKVYR 817 (866)
T ss_pred eeEEEE
Confidence 654444
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.57 E-value=1.6e-14 Score=109.40 Aligned_cols=134 Identities=21% Similarity=0.253 Sum_probs=81.6
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHh-hccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQ-LDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~-~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
+|+-.++..++|+|||.-.+..++.. +..+ .++|++.||+.+++.+.+.++.. ++.+ ...-.. ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~---~rvLvL~PTRvva~em~~aL~~~----~~~~--~t~~~~-----~~ 68 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRR---LRVLVLAPTRVVAEEMYEALKGL----PVRF--HTNARM-----RT 68 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT-----EEEEESSHHHHHHHHHHTTTS----SEEE--ESTTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHcc---CeEEEecccHHHHHHHHHHHhcC----Cccc--Cceeee-----cc
Confidence 56677899999999998766655543 3333 58999999999999888877653 2222 111110 01
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHHHHHHHHhCCCCceEEEEeecCChH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYDIFQLLPPKIQVGVFSATMPPE 225 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 225 (412)
..++.-|-++|+..+.+.+.+ .....++++||+||||.....+ +...+... ... ...++|+|||||+..
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~-g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AES-GEAKVIFMTATPPGS 139 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHT-TS-EEEEEESS-TT-
T ss_pred ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhc-cCeeEEEEeCCCCCC
Confidence 234567899999999887766 5556899999999999743332 11222222 111 246799999999864
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.53 E-value=7.5e-14 Score=125.74 Aligned_cols=152 Identities=18% Similarity=0.096 Sum_probs=95.2
Q ss_pred HHHhhhhhhh-------------cCccEEEECCCCCCchhHhHHHHHHhhccCC--CceeEEEEcCCHHHHHHHHHHHHH
Q 015158 65 IQQRGIVPFC-------------KGLDVIQQAQSGTGKTATFCSGILQQLDYGL--VECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 65 ~Q~~a~~~~~-------------~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
||.+++..+. ..+.+++..++|+|||..++..+........ ....+||+||. .+..+|.+++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777776653 3467899999999999887665553222221 11259999999 888999999999
Q ss_pred hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHH--------HHHHcCCCCCCCceEEEEeCCchhhccCcHHH
Q 015158 130 LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVF--------DMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQ 201 (412)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~--------~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~ 201 (412)
+.......+..+.+...............+++|+|++.+. ..+. ..++++||+||+|.+.+.. ..
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~-----~~~~~~vIvDEaH~~k~~~--s~ 152 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLK-----QIKWDRVIVDEAHRLKNKD--SK 152 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHH-----TSEEEEEEETTGGGGTTTT--SH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccc-----cccceeEEEeccccccccc--cc
Confidence 9865456777777665222222223456799999999998 2222 1358999999999985443 33
Q ss_pred HHHHHHhCCCCceEEEEeecCChH
Q 015158 202 IYDIFQLLPPKIQVGVFSATMPPE 225 (412)
Q Consensus 202 ~~~i~~~~~~~~~~i~~SAT~~~~ 225 (412)
....+..+. ...++++||||-.+
T Consensus 153 ~~~~l~~l~-~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 153 RYKALRKLR-ARYRWLLSGTPIQN 175 (299)
T ss_dssp HHHHHHCCC-ECEEEEE-SS-SSS
T ss_pred ccccccccc-cceEEeeccccccc
Confidence 333444454 66689999998643
No 164
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.50 E-value=7.7e-11 Score=107.50 Aligned_cols=293 Identities=14% Similarity=0.195 Sum_probs=198.7
Q ss_pred ccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc-------------CcE-------EEEEEcCcchHHHHHHh-------
Q 015158 102 DYGLVECQALVLAPTRELAQQIEKVMRALGDYL-------------GVK-------VHACVGGTSVREDQRIL------- 154 (412)
Q Consensus 102 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-------------~~~-------~~~~~~~~~~~~~~~~~------- 154 (412)
.++-..++|||++|++..+-++.+.+.++.... +.. ...-.....+......+
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 345566899999999999999998887765431 100 00000011122222222
Q ss_pred -----------------cCCCcEEEeChHHHHHHHHcC------CCCCCCceEEEEeCCchhhc--cCcHHHHHHHHHhC
Q 015158 155 -----------------SSGVHVVVGTPGRVFDMLRRQ------SLRPDNIRIFVLDEADEMLS--RGFKDQIYDIFQLL 209 (412)
Q Consensus 155 -----------------~~~~~iii~T~~~l~~~~~~~------~~~~~~~~~iiiDE~h~~~~--~~~~~~~~~i~~~~ 209 (412)
..+.||||+||=.|...+... .-.++.+.++|+|.+|.+.- |.....+...+...
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~ 191 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQ 191 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccC
Confidence 123589999999988777642 22357788999999998763 33333333333333
Q ss_pred CC---------------------CceEEEEeecCChHHHHHHHHhcCC-CeEEEe--cCC-----ccccCCceEEEEEec
Q 015158 210 PP---------------------KIQVGVFSATMPPEALEITRKFMNK-PVRILV--KRD-----ELTLEGIKQFHVNVE 260 (412)
Q Consensus 210 ~~---------------------~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~--~~~-----~~~~~~~~~~~~~~~ 260 (412)
|. -.|.|++|+...++........+.+ .-.+.. ... ......+.+.+..++
T Consensus 192 P~~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~ 271 (442)
T PF06862_consen 192 PKKSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFD 271 (442)
T ss_pred CCCCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEec
Confidence 32 2489999999999887777763322 111221 111 123345566666544
Q ss_pred cch------hhHHH----HHHHHH-hcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015158 261 KEE------WKLET----LCDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 329 (412)
Q Consensus 261 ~~~------~~~~~----l~~~~~-~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 329 (412)
... ..... +...+. ....+.+|||++|.-+--.+..+|++.+.....++...+..+-...-..|.+|+.
T Consensus 272 ~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~ 351 (442)
T PF06862_consen 272 CSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRK 351 (442)
T ss_pred CCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCc
Confidence 322 11111 122223 4455789999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC--cCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCC------CceEEEEeccCcHHHHHHHH
Q 015158 330 RVLITTDLL--ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR------KGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 330 ~vlv~t~~~--~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~------~g~~~~~~~~~~~~~~~~~~ 394 (412)
++|+.|.-+ -.-..+.++++||++++|..+.-|...+.-.+.... ...|.++++.-|.-.++.+.
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIV 424 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIV 424 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHh
Confidence 999999844 466778999999999999999988888765555432 57899999998887766553
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.45 E-value=2.3e-12 Score=124.26 Aligned_cols=316 Identities=21% Similarity=0.261 Sum_probs=194.4
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
|+. ++..|.-..-.+..| -+..+-||-|||+++.+++.-....+ ..+.+++.+.-|+..-++++..+....|+.
T Consensus 78 g~~-~~dVQliG~i~lh~g--~iaEM~TGEGKTL~atlp~ylnaL~g---kgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 78 GMR-HFDVQLLGGIVLHLG--DIAEMRTGEGKTLVATLPAYLNALAG---KGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred CCC-hhhHHHhhhhhhcCC--ceeeeecCCchHHHHHHHHHHHhcCC---CCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 444 566666655555544 48899999999999988776554433 478899999999999999999999999999
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHH-HHHH------cCCCCCCCceEEEEeCCchhh----------cc----
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVF-DMLR------RQSLRPDNIRIFVLDEADEML----------SR---- 196 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~-~~~~------~~~~~~~~~~~iiiDE~h~~~----------~~---- 196 (412)
+.....+....... ..-.++|.++|...|- ..+. ......+...+.|+||++.+. ++
T Consensus 152 vG~~~~~m~~~ek~--~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 152 VGVILAGMSPEEKR--AAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred eeeccCCCChHHHH--HHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 99988877644433 3345789999976651 1111 111223456778888888643 11
Q ss_pred --CcHHHHHHHHHhCCCC--------------------------------------------------------------
Q 015158 197 --GFKDQIYDIFQLLPPK-------------------------------------------------------------- 212 (412)
Q Consensus 197 --~~~~~~~~i~~~~~~~-------------------------------------------------------------- 212 (412)
..+..+..+...+...
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 1122233333222100
Q ss_pred -------------------------------------------------------ceEEEEeecCChHHHHHHHHhcCCC
Q 015158 213 -------------------------------------------------------IQVGVFSATMPPEALEITRKFMNKP 237 (412)
Q Consensus 213 -------------------------------------------------------~~~i~~SAT~~~~~~~~~~~~~~~~ 237 (412)
.+..+||+|...+..++..-+....
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~v 389 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDV 389 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCce
Confidence 1233333333222222222111111
Q ss_pred eEEEecCCccccCCceEEEEEeccchhhHHHHHH-HHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHH
Q 015158 238 VRILVKRDELTLEGIKQFHVNVEKEEWKLETLCD-LYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 315 (412)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 315 (412)
+.+.....-...+.-.. .......+...+.+ +...+ .+.|+||-+.+++..+.+.+.|.+.|++..+++......
T Consensus 390 v~iPTnrp~~R~D~~D~---vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~ 466 (822)
T COG0653 390 VVIPTNRPIIRLDEPDL---VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAR 466 (822)
T ss_pred eeccCCCcccCCCCccc---cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHH
Confidence 11111111111111111 11122334444444 44444 568999999999999999999999999998888876533
Q ss_pred HHHHHHHHHhcCCC-cEEEEcCCCcCCCCCCCCC-----------EEEEccCCCChhhHHHhhhhcccCCCCceEEEEec
Q 015158 316 TRDIIMREFRSGSS-RVLITTDLLARGIDVQQVS-----------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383 (412)
Q Consensus 316 ~r~~~~~~f~~g~~-~vlv~t~~~~~G~d~~~~~-----------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 383 (412)
+-+.+- .+|.. -|-|+|+++++|.|+.--. +||-....-|...-.|.-||+||.|.+|.+-.|++
T Consensus 467 EA~Iia---~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lS 543 (822)
T COG0653 467 EAEIIA---QAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 543 (822)
T ss_pred HHHHHh---hcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhh
Confidence 322222 34544 4889999999999987322 45556666677777799999999999999887776
Q ss_pred cCcH
Q 015158 384 RDDE 387 (412)
Q Consensus 384 ~~~~ 387 (412)
-.|.
T Consensus 544 leD~ 547 (822)
T COG0653 544 LEDD 547 (822)
T ss_pred hHHH
Confidence 5544
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.30 E-value=2e-11 Score=107.79 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCCCChHHHHhhhh----hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC---ceeEEEEcCCHHHHHHHHHHHHH
Q 015158 57 YGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---ECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
++|. |||.|.+.+. .+..|+++++.+|||+|||++++.+++..+..... ..+++|.++|.++.+|...++++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5777 7999999444 45568899999999999999999999866544322 23799999999998888777765
Q ss_pred h
Q 015158 130 L 130 (412)
Q Consensus 130 ~ 130 (412)
.
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 4
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.30 E-value=2e-11 Score=107.79 Aligned_cols=73 Identities=23% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCCCChHHHHhhhh----hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC---ceeEEEEcCCHHHHHHHHHHHHH
Q 015158 57 YGFEKPSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV---ECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
++|. |||.|.+.+. .+..|+++++.+|||+|||++++.+++..+..... ..+++|.++|.++.+|...++++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5777 7999999444 45568899999999999999999999866544322 23799999999998888777765
Q ss_pred h
Q 015158 130 L 130 (412)
Q Consensus 130 ~ 130 (412)
.
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 4
No 168
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.25 E-value=1.7e-09 Score=107.12 Aligned_cols=143 Identities=14% Similarity=0.236 Sum_probs=86.4
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH---------HhhcccCcEEEEEEcCc--
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR---------ALGDYLGVKVHACVGGT-- 145 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~---------~~~~~~~~~~~~~~~~~-- 145 (412)
.++.+.++||+|||.+|+..++..... ....++||+||+.+..+.+...+. .......+....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~-~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK-YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 478999999999999998888765443 234689999999998877765554 11222234444454332
Q ss_pred -----chHHHHHHhc-------CCCcEEEeChHHHHHHHH--cC--CC----CCCCc-------eEEEEeCCchhhccCc
Q 015158 146 -----SVREDQRILS-------SGVHVVVGTPGRVFDMLR--RQ--SL----RPDNI-------RIFVLDEADEMLSRGF 198 (412)
Q Consensus 146 -----~~~~~~~~~~-------~~~~iii~T~~~l~~~~~--~~--~~----~~~~~-------~~iiiDE~h~~~~~~~ 198 (412)
........+. +...|+++|.+.|..... .. .+ ....+ -+||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 1111211121 146899999998865221 00 00 00111 27999999997543
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
...+..+ ..+.+.. ++..|||.+.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2344555 4454444 5669999865
No 169
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.17 E-value=4.3e-09 Score=99.26 Aligned_cols=106 Identities=18% Similarity=0.291 Sum_probs=87.8
Q ss_pred CcEEEEEcchhHHHHHHHHHhcC------------------CCeeEEecCCCCHHHHHHHHHHHhcC--CC-cEEEEcCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSR------------------DHTVSATHGDMDQNTRDIIMREFRSG--SS-RVLITTDL 337 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~------------------~~~~~~~~~~~~~~~r~~~~~~f~~g--~~-~vlv~t~~ 337 (412)
.++|||.++.....-+.+.|.++ +.....+.|..+..+|++++.+|+.. -. -++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 37899999998888888888765 12344567778889999999999873 22 36778999
Q ss_pred CcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEecc
Q 015158 338 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 384 (412)
Q Consensus 338 ~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~ 384 (412)
...|+|+-..+.+++++..|++..-.|++.|+-|.|+...|+++=.-
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeeh
Confidence 99999999888899999999999999999999999998888876543
No 170
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=99.15 E-value=1.4e-07 Score=88.53 Aligned_cols=104 Identities=14% Similarity=0.204 Sum_probs=74.2
Q ss_pred CcEEEEEcchhHHHHHHHHHhcCCC-------eeEEecCCCCHHHHHHHHHHHhc----CCCcEEEEc--CCCcCCCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSRDH-------TVSATHGDMDQNTRDIIMREFRS----GSSRVLITT--DLLARGIDVQ 345 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~t--~~~~~G~d~~ 345 (412)
+.+++|++|.+....+.+.+.+.|+ +-+++-..-+ -+.+++.+.. |...+|++. .-+++|||+.
T Consensus 630 gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 630 GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 7899999999999999999987643 2222322222 3556666643 555677654 5889999998
Q ss_pred C--CCEEEEccCCCC--------------------------------hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 346 Q--VSLVINYDLPTQ--------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 346 ~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
+ ++.|+.+++|+. +....|.+|||.|..++--++++++..
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDKR 780 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehhh
Confidence 6 788888888742 224579999999997777777777654
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.06 E-value=2.7e-09 Score=91.65 Aligned_cols=130 Identities=23% Similarity=0.302 Sum_probs=96.1
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+. |++.|.-+.-.+.+|+ ++.+.||-|||+++.++++-....+ ..|=|++.+..|+..-++++..+...+|+
T Consensus 74 ~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 4666 9999999998887776 9999999999988877766555444 47999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-------CCCCceEEEEeCCchhh
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-------RPDNIRIFVLDEADEML 194 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-------~~~~~~~iiiDE~h~~~ 194 (412)
.+....++.+........ .++|+++|...|..-+.+..+ ..+.++++|+||++.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999887754433333 357999999988653322221 13678899999999865
No 172
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=1.3e-08 Score=92.29 Aligned_cols=334 Identities=18% Similarity=0.217 Sum_probs=198.5
Q ss_pred CCCCChHHHHhhhhhhhcCccEEE-ECCCCCCc--hhHhHHHHHHhh----------------------------ccCCC
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQ-QAQSGTGK--TATFCSGILQQL----------------------------DYGLV 106 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv-~~~tGsGK--T~~~~~~~~~~~----------------------------~~~~~ 106 (412)
.-.++++.|.+.+....+.++++- ....+.|+ +-.|.+.+++++ .++-.
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 345689999999999888888764 23334555 345556666554 11223
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCc-EE---------EEEEcC-------cchHHH-HHHh--------------
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGV-KV---------HACVGG-------TSVRED-QRIL-------------- 154 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~---------~~~~~~-------~~~~~~-~~~~-------------- 154 (412)
.++||||||++.-+-...+.+..+....+- +. ..+.|. .+.+.+ ...+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 568999999999999988888776322110 00 001110 000111 1111
Q ss_pred ----------cCCCcEEEeChHHHHHHHHcCCC------CCCCceEEEEeCCchhhccCcHHHHHHHHHhCCC---C---
Q 015158 155 ----------SSGVHVVVGTPGRVFDMLRRQSL------RPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPP---K--- 212 (412)
Q Consensus 155 ----------~~~~~iii~T~~~l~~~~~~~~~------~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~---~--- 212 (412)
....+|+||+|=.|...+.+.+- .++.+.++|+|.+|.+...+ ...+..++..++. .
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 13458999999988777763221 24567899999999877554 3445555555431 1
Q ss_pred ------------------ceEEEEeecCChHHHHHHHHhcCCC---eEEEecCCccccC----CceEEE--EEecc----
Q 015158 213 ------------------IQVGVFSATMPPEALEITRKFMNKP---VRILVKRDELTLE----GIKQFH--VNVEK---- 261 (412)
Q Consensus 213 ------------------~~~i~~SAT~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~--~~~~~---- 261 (412)
.|.+++|+--.+.....+...+.+. +........-... .+.+.+ ..+..
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 1333444433333333222222111 1111111110000 011111 11111
Q ss_pred chhhHHHH-HHHHHhc---CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015158 262 EEWKLETL-CDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 337 (412)
Q Consensus 262 ~~~~~~~l-~~~~~~~---~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 337 (412)
.+.....+ ..++... ...-+|||.||.-.--++..++++..+....++...+...-...-+.|..|...+++-|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 11122221 1222221 2245799999999999999999999888888888878777788889999999999999985
Q ss_pred C--cCCCCCCCCCEEEEccCCCChhhH---HHhhhhcccCC----CCceEEEEeccCcHHHHHH
Q 015158 338 L--ARGIDVQQVSLVINYDLPTQPENY---LHRIGRSGRFG----RKGVAINFVTRDDERMLFD 392 (412)
Q Consensus 338 ~--~~G~d~~~~~~vi~~~~~~s~~~~---~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~ 392 (412)
+ -+-.++++++.||++.+|..+.-| +.+++|..-.| ..-.|.++++.-|.-.+..
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ 675 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLEN 675 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHH
Confidence 4 577889999999999999987654 66777765443 2356888888876654433
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.03 E-value=2.7e-09 Score=103.27 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred CcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCCCcCCCCCCCCCEEEEccCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SR-VLITTDLLARGIDVQQVSLVINYDLP 356 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~t~~~~~G~d~~~~~~vi~~~~~ 356 (412)
.+++||++-...+..+...|...+.....+.|.++...|.+.+..|..+. .. .+++..+.+.|+|+..+.+|+..++.
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999999999999999888889999999999999999999998653 33 34567899999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCceEEE
Q 015158 357 TQPENYLHRIGRSGRFGRKGVAIN 380 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~g~~~~ 380 (412)
|++....|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998776655
No 174
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.02 E-value=1.8e-09 Score=103.37 Aligned_cols=310 Identities=15% Similarity=0.205 Sum_probs=182.3
Q ss_pred HHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCc--eeEEEEcCCHHHHHHHHHHHHH-----hhcccCcE
Q 015158 65 IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE--CQALVLAPTRELAQQIEKVMRA-----LGDYLGVK 137 (412)
Q Consensus 65 ~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~--~~~lil~P~~~L~~q~~~~~~~-----~~~~~~~~ 137 (412)
+-.+.+..+..+..+++.+.||.|||..+...++..+.....+ ..+.+.-|++..+.-+++.+.. .+...+.+
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 3445555666678889999999999999988888887655322 2355666777665555554432 33222333
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCceEE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i 216 (412)
+.....-.. ..-.|..+|.+-+.+..+... ..+.++|+||+|+.--. .|...+.+=+....+...++
T Consensus 462 vRf~Sa~pr---------pyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 462 VRFDSATPR---------PYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred ccccccccc---------cccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 322211110 112588999999988877654 46789999999974322 23322222222223455667
Q ss_pred EEeecCChHHH--------------------HHHHHhcCCCeEE-Eec---------CCccccCC------c--------
Q 015158 217 VFSATMPPEAL--------------------EITRKFMNKPVRI-LVK---------RDELTLEG------I-------- 252 (412)
Q Consensus 217 ~~SAT~~~~~~--------------------~~~~~~~~~~~~~-~~~---------~~~~~~~~------~-------- 252 (412)
++|||+..+.. .+....+..+... ... ..+..++. .
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 77777653211 1111111111100 000 00000000 0
Q ss_pred ----eEEEEEeccchhhHHHHHHHH----HhcCCCcEEEEEcchhHHHHHHHHHhcC-------CCeeEEecCCCCHHHH
Q 015158 253 ----KQFHVNVEKEEWKLETLCDLY----ETLAITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTR 317 (412)
Q Consensus 253 ----~~~~~~~~~~~~~~~~l~~~~----~~~~~~k~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r 317 (412)
...+............+..++ ...-.+-+++|.+.-...-.++..|..+ ...+...|+.....+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 000000000000011111111 2223367889999888888888877654 4567888998888888
Q ss_pred HHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc------------------CCCChhhHHHhhhhcccCCCCceEE
Q 015158 318 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD------------------LPTQPENYLHRIGRSGRFGRKGVAI 379 (412)
Q Consensus 318 ~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~------------------~~~s~~~~~Q~~GR~~R~g~~g~~~ 379 (412)
.++.+....|..++|++|.+..+.+.+.++..|++.+ ...|....+|+.||+||. .+|.|.
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 8999888889999999999999888887766665332 235778899999999998 678888
Q ss_pred EEeccCcH
Q 015158 380 NFVTRDDE 387 (412)
Q Consensus 380 ~~~~~~~~ 387 (412)
.+.+....
T Consensus 769 ~lcs~arF 776 (1282)
T KOG0921|consen 769 HLCSRARF 776 (1282)
T ss_pred cccHHHHH
Confidence 77765443
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.94 E-value=4.1e-08 Score=94.15 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccC--CCCce-----------EEEEeccCcHHHHHHH
Q 015158 327 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--GRKGV-----------AINFVTRDDERMLFDI 393 (412)
Q Consensus 327 g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--g~~g~-----------~~~~~~~~~~~~~~~~ 393 (412)
...+.|++..++.+|+|-|++=+++-+....|...=.|.+||+-|. .+.|. -.+++......++..+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 22222 2345555666666666
Q ss_pred HHHhc
Q 015158 394 QKFYN 398 (412)
Q Consensus 394 ~~~~~ 398 (412)
++...
T Consensus 562 qkEI~ 566 (985)
T COG3587 562 QKEIN 566 (985)
T ss_pred HHHHH
Confidence 65443
No 176
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.93 E-value=1.8e-08 Score=86.79 Aligned_cols=155 Identities=20% Similarity=0.201 Sum_probs=103.3
Q ss_pred ChHHHHhhhhhhhc----------CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 62 PSAIQQRGIVPFCK----------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
+...|.+++-...+ +..+++-..||.||-......++.....++ .+.|++..+..|..+..+.++.+.
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DIG 115 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDIG 115 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHhC
Confidence 67788887766542 346788889999999888777777766653 479999999999999999999875
Q ss_pred cccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC---CCC---------CCCceEEEEeCCchhhccCc-
Q 015158 132 DYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ---SLR---------PDNIRIFVLDEADEMLSRGF- 198 (412)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~---~~~---------~~~~~~iiiDE~h~~~~~~~- 198 (412)
.. .+.+..+..-.. .....-+..|+++||..|....... ... ...=++||+||||...+...
T Consensus 116 ~~-~i~v~~l~~~~~----~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~ 190 (303)
T PF13872_consen 116 AD-NIPVHPLNKFKY----GDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSG 190 (303)
T ss_pred CC-cccceechhhcc----CcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCcc
Confidence 43 333332221110 0111224579999999987764321 100 11225899999999765432
Q ss_pred -------HHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 199 -------KDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 199 -------~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
...+..+.+.+| +.+++.+|||--.
T Consensus 191 ~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgas 222 (303)
T PF13872_consen 191 SKKPSKTGIAVLELQNRLP-NARVVYASATGAS 222 (303)
T ss_pred CccccHHHHHHHHHHHhCC-CCcEEEecccccC
Confidence 134445556664 7779999999643
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=2.5e-09 Score=104.22 Aligned_cols=259 Identities=17% Similarity=0.172 Sum_probs=156.0
Q ss_pred ChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 62 PSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
..|.|...+..+.. ..++++-+|||+|||.++..++...+... +..++++++|.++|+....+.++......|+++..
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~-p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY-PGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC-CCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 45567777766554 36789999999999999999888776654 55789999999999998888887765555889999
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC--CCCCCceEEEEeCCchhhccCcHHHHHHHH-------HhCCC
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS--LRPDNIRIFVLDEADEMLSRGFKDQIYDIF-------QLLPP 211 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~-------~~~~~ 211 (412)
++|+...+.. .-...+++|+||+++....+.+. ...+++..+|+||.|.+... +...+..+. ...++
T Consensus 1007 ~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~~ 1082 (1230)
T KOG0952|consen 1007 LTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTEE 1082 (1230)
T ss_pred ccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccCc
Confidence 9988775522 22346899999999988777443 34678899999999975543 222222222 22234
Q ss_pred CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEE------EEeccch-hhHHHHHHHHHhcCCCcEEEE
Q 015158 212 KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH------VNVEKEE-WKLETLCDLYETLAITQSVIF 284 (412)
Q Consensus 212 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~l~~~~~~~~~~k~lif 284 (412)
..+++++|--+. +..+...++.-.+. + ..+....+-.....+ +..+... .....+..+....+..+++||
T Consensus 1083 ~vr~~glsta~~-na~dla~wl~~~~~-~-nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1083 PVRYLGLSTALA-NANDLADWLNIKDM-Y-NFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred chhhhhHhhhhh-ccHHHHHHhCCCCc-C-CCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 556666665543 22333333322222 1 111111111111111 1112212 223344444444566899999
Q ss_pred EcchhHHH----HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015158 285 VNTRRKVD----WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 330 (412)
Q Consensus 285 ~~~~~~~~----~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 330 (412)
+.++++.. .+...+....-+..+++.+ ..+-+.++...+...++
T Consensus 1160 v~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred eecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 99887543 3333333333344555443 56666666666655443
No 178
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.83 E-value=1.5e-08 Score=82.11 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=77.6
Q ss_pred HHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCC--eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--CCcCCCCCCC
Q 015158 271 DLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ 346 (412)
Q Consensus 271 ~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~--~~~~G~d~~~ 346 (412)
++++..+ +.+|||++|.+..+.+.+.+++... .+.++.. +..++..+++.|++++..||+++. .+.+|+|+++
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999987642 2222222 345788999999999999999998 9999999996
Q ss_pred --CCEEEEccCCCC------------------------------hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 347 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 347 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
++.||+.+.|.. .....|.+||+.|..++--++++++..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778999888742 123589999999997766666666664
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.81 E-value=1.2e-08 Score=88.48 Aligned_cols=69 Identities=26% Similarity=0.262 Sum_probs=51.1
Q ss_pred CChHHHHhhhhhhhcCcc-EEEECCCCCCchhHhHHHHHHhh-----ccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCKGLD-VIQQAQSGTGKTATFCSGILQQL-----DYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~-~lv~~~tGsGKT~~~~~~~~~~~-----~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
++++.|++|+..++.... .+|+||+|+|||.+....+.... .....+.++|+++|+..-+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999888 99999999999966554444331 1234567899999999999999888877
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.74 E-value=3.5e-07 Score=85.50 Aligned_cols=85 Identities=22% Similarity=0.200 Sum_probs=67.7
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 52 RGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 52 ~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
+.+...++.+|+.-|..|+.+++.+.-.+|++|+|+|||.+....++..... ...++|+++|+..-++|+++.+.+-
T Consensus 401 ~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t- 477 (935)
T KOG1802|consen 401 RRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT- 477 (935)
T ss_pred hhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc-
Confidence 3555668889999999999999999999999999999998765555544433 3457999999999999999888764
Q ss_pred cccCcEEEEEE
Q 015158 132 DYLGVKVHACV 142 (412)
Q Consensus 132 ~~~~~~~~~~~ 142 (412)
|+++..+.
T Consensus 478 ---gLKVvRl~ 485 (935)
T KOG1802|consen 478 ---GLKVVRLC 485 (935)
T ss_pred ---CceEeeee
Confidence 55555554
No 181
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.68 E-value=4.3e-06 Score=76.26 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=51.0
Q ss_pred HCCCCCChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhhccCC-CceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 56 AYGFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQLDYGL-VECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
-+++...+|-|-+=...+.. +.+.++.+|+|+|||.+.+..+.....+-. ...+.++..-|..-.+....+++.+
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 35777788888776665543 578999999999999887766665544332 2345666666666666666666543
No 182
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.65 E-value=2.7e-08 Score=82.09 Aligned_cols=146 Identities=15% Similarity=0.186 Sum_probs=74.3
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH-------HHHHHHHhhc
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ-------IEKVMRALGD 132 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-------~~~~~~~~~~ 132 (412)
...+..|+.++..+.....+++.+|.|||||+.++..++..+..+ .-.+++++-|.....++ ..+.+..+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g-~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG-EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT-S-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC-CCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 346889999999999888899999999999999999888887764 44578888887653111 1111111100
Q ss_pred ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCC
Q 015158 133 YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPK 212 (412)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~ 212 (412)
..-.....+.+.... .. ......|-+.+...+ +-..+ + -.+||+|||+.+. ..++..++.++..+
T Consensus 82 p~~d~l~~~~~~~~~---~~-~~~~~~Ie~~~~~~i----RGrt~--~-~~~iIvDEaQN~t----~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 82 PIYDALEELFGKEKL---EE-LIQNGKIEIEPLAFI----RGRTF--D-NAFIIVDEAQNLT----PEELKMILTRIGEG 146 (205)
T ss_dssp HHHHHHTTTS-TTCH---HH-HHHTTSEEEEEGGGG----TT--B----SEEEEE-SGGG------HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHhChHhH---HH-HhhcCeEEEEehhhh----cCccc--c-ceEEEEecccCCC----HHHHHHHHcccCCC
Confidence 000000000011111 11 112234555553332 11111 2 3799999999753 56788888888888
Q ss_pred ceEEEEeec
Q 015158 213 IQVGVFSAT 221 (412)
Q Consensus 213 ~~~i~~SAT 221 (412)
.+++++.-.
T Consensus 147 skii~~GD~ 155 (205)
T PF02562_consen 147 SKIIITGDP 155 (205)
T ss_dssp -EEEEEE--
T ss_pred cEEEEecCc
Confidence 887776655
No 183
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.60 E-value=2.7e-06 Score=84.79 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=57.0
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 158 VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 158 ~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
..|+++||..+.+-+....+....+..||+||||++....-..-+-+++...++...+.++||.|.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 479999999999999999999999999999999998866656666677776677778999999986
No 184
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.60 E-value=2.3e-07 Score=77.31 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=71.4
Q ss_pred ChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEE
Q 015158 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 139 (412)
|++-|++|+..++.+ +-.++.++.|+|||.+. ..+...+... +.++++++||...+..+.+.. +..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~-- 69 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIE-- 69 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS---
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccc--
Confidence 788999999999754 35778899999999764 3344444432 368999999998777655541 111
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC----CCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCC-Cce
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS----LRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPP-KIQ 214 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~----~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~-~~~ 214 (412)
..|..+++....... ......++|||||+-.+. ...+..++...+. +.+
T Consensus 70 ----------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 70 ----------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAK 123 (196)
T ss_dssp ----------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-E
T ss_pred ----------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCE
Confidence 122222211111100 003456799999999753 3456677777665 666
Q ss_pred EEEEeec
Q 015158 215 VGVFSAT 221 (412)
Q Consensus 215 ~i~~SAT 221 (412)
++++--+
T Consensus 124 lilvGD~ 130 (196)
T PF13604_consen 124 LILVGDP 130 (196)
T ss_dssp EEEEE-T
T ss_pred EEEECCc
Confidence 6666655
No 185
>PRK10536 hypothetical protein; Provisional
Probab=98.47 E-value=8.1e-07 Score=75.43 Aligned_cols=146 Identities=16% Similarity=0.116 Sum_probs=85.1
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHH-----------HHHHH
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELA-----------QQIEK 125 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~-----------~q~~~ 125 (412)
.++...+..|...+..+.++..+++.+|+|+|||+.+...++..+..+ .-.++++.=|..... +...-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 355667889999999999888899999999999998877777665443 244666666664321 11111
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHH
Q 015158 126 VMRALGDYLGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYD 204 (412)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 204 (412)
.+..+...... +.+.. ...... .....|-+.... +++...+ .-++||+|||+.+. ..++..
T Consensus 134 ~~~pi~D~L~~----~~~~~---~~~~~~~~~~~~Iei~~l~----ymRGrtl---~~~~vIvDEaqn~~----~~~~k~ 195 (262)
T PRK10536 134 YFRPVYDVLVR----RLGAS---FMQYCLRPEIGKVEIAPFA----YMRGRTF---ENAVVILDEAQNVT----AAQMKM 195 (262)
T ss_pred HHHHHHHHHHH----HhChH---HHHHHHHhccCcEEEecHH----HhcCCcc---cCCEEEEechhcCC----HHHHHH
Confidence 11221111110 01111 111111 112345566522 2222222 23799999999753 367778
Q ss_pred HHHhCCCCceEEEEeec
Q 015158 205 IFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 205 i~~~~~~~~~~i~~SAT 221 (412)
++..+..+.++|++.-.
T Consensus 196 ~ltR~g~~sk~v~~GD~ 212 (262)
T PRK10536 196 FLTRLGENVTVIVNGDI 212 (262)
T ss_pred HHhhcCCCCEEEEeCCh
Confidence 88888888876655443
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.35 E-value=2.9e-06 Score=79.02 Aligned_cols=64 Identities=23% Similarity=0.212 Sum_probs=53.6
Q ss_pred ChHHHHhhhhhhhcCc-cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 62 PSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
+.+-|+.|+......+ -.++.||+|+|||.+....+...+..+ .++|+.+|+..-++.+.+.+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhc
Confidence 8889999999988875 467899999999998877777777665 499999999998888887643
No 187
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.34 E-value=3.2e-06 Score=81.86 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=65.3
Q ss_pred CcEEEEEcchhHHHHHHHHHhcC-------CCeeEEecCCCCHHHHHHHHHHHhcC--------CCcEEEEcCCCcCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSG--------SSRVLITTDLLARGID 343 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g--------~~~vlv~t~~~~~G~d 343 (412)
..+|||+++....+.+....... +..-.++--. +..+-.+++.+|.+. -.-+.||-...++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 45899999998777775554432 1112222211 444455566666542 2234456668899999
Q ss_pred CCC--CCEEEEccCCCC--------------------------------------hhhHHHhhhhcccCCCCceEEEEec
Q 015158 344 VQQ--VSLVINYDLPTQ--------------------------------------PENYLHRIGRSGRFGRKGVAINFVT 383 (412)
Q Consensus 344 ~~~--~~~vi~~~~~~s--------------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~ 383 (412)
+.+ .+.||..|.|+- ...+.|++||+.|..++=.++++++
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D 720 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCD 720 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEee
Confidence 985 778888887631 2346899999999866644454554
Q ss_pred c
Q 015158 384 R 384 (412)
Q Consensus 384 ~ 384 (412)
.
T Consensus 721 ~ 721 (945)
T KOG1132|consen 721 D 721 (945)
T ss_pred c
Confidence 4
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.32 E-value=3.4e-06 Score=77.36 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=66.8
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 157 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (412)
-++|.|.+|||||+.++-.+... .....+.+++++|++..|.....+.+..-. .. ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNHPLRNKLREQLAKKY----------NP------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hccccCCceEEEEecchHHHHHHHHHhhhc----------cc------------ch
Confidence 46899999999998876544433 222344689999999999888877776632 00 00
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-------cHHHHHHHHHh
Q 015158 158 VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-------FKDQIYDIFQL 208 (412)
Q Consensus 158 ~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-------~~~~~~~i~~~ 208 (412)
....+..+..+.+...........+++||+||||++.... ....+..++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1233334444433332222334678999999999987632 23455555554
No 189
>PF13245 AAA_19: Part of AAA domain
Probab=98.31 E-value=2.4e-06 Score=58.74 Aligned_cols=52 Identities=33% Similarity=0.392 Sum_probs=39.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
+.-++|.+|+|||||.+.+-.+...+.. ...+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4445669999999998776666666532 122568999999999999888877
No 190
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.30 E-value=1.7e-05 Score=66.17 Aligned_cols=152 Identities=21% Similarity=0.249 Sum_probs=93.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc---CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK---GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~---~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
+|+....+..+.=.+. .++. +|+.|.+....+.+ |.+.+.++-+|.|||.+.+..++..+.++. .-+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcC-
Confidence 5666666666666663 4666 89999999999886 478999999999999887555554444432 34666677
Q ss_pred HHHHHHHHHHHHHh-hcccCcEEEEEE--cCcchHH-----H---HHHhcCCCcEEEeChHHHHHHHHcC-------CCC
Q 015158 117 RELAQQIEKVMRAL-GDYLGVKVHACV--GGTSVRE-----D---QRILSSGVHVVVGTPGRVFDMLRRQ-------SLR 178 (412)
Q Consensus 117 ~~L~~q~~~~~~~~-~~~~~~~~~~~~--~~~~~~~-----~---~~~~~~~~~iii~T~~~l~~~~~~~-------~~~ 178 (412)
++|.+|+.+.+... +...+-.+..+. -...... . .......-.|+++||+.+....... ...
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~ 158 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPE 158 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHH
Confidence 68999998888663 333344444332 1111111 1 1112234479999999876533211 100
Q ss_pred -----------CCCceEEEEeCCchhhcc
Q 015158 179 -----------PDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 179 -----------~~~~~~iiiDE~h~~~~~ 196 (412)
++....=|+||+|.++..
T Consensus 159 ~~~~l~~~q~~l~~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 159 EARELLKIQKWLDEHSRDILDESDEILSV 187 (229)
T ss_pred HHHHHHHHHHHHHhcCCeEeECchhccCc
Confidence 122345689999986543
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.27 E-value=8.8e-06 Score=79.05 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=86.5
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (412)
.++|+.|+...+.++-.+|.+++|+|||.+....+...... .....++++++||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~---- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT---- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc----
Confidence 47999999999999999999999999997753322221111 1123578899999887777777665432211110
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc------CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceE
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR------QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQV 215 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 215 (412)
.... .....-..|.++|+..... ...+.-.++++|+||+-.+. ...+..++..++++.++
T Consensus 230 ------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rl 295 (615)
T PRK10875 230 ------DEQK----KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARV 295 (615)
T ss_pred ------hhhh----hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEE
Confidence 0000 0001123444444322111 11122346899999999652 35667788889999998
Q ss_pred EEEeec
Q 015158 216 GVFSAT 221 (412)
Q Consensus 216 i~~SAT 221 (412)
|++.-.
T Consensus 296 IlvGD~ 301 (615)
T PRK10875 296 IFLGDR 301 (615)
T ss_pred EEecch
Confidence 888766
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.26 E-value=8.2e-06 Score=80.19 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=54.1
Q ss_pred CChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.+++.|++|+..++.. ...+|.||+|+|||.+....+...+..+ .++++++|+..-+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 4799999999998876 6788999999999987765555555443 4899999999988888888776
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.26 E-value=1.4e-05 Score=77.53 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=85.7
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHH--HhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL--QQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~--~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
.++|+.|+...+.++-.+|.|++|+|||.+....+. ..........++++++||-.-+..+.+............
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 379999999999999999999999999976533222 121111112479999999877776666554432111110
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc------CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR------QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~------~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
. ... ....+-..|.++|+..... ...+...+++||+||+-.+. ...+..++..++++.+
T Consensus 224 ------~-~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 ------E-ALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred ------h-hhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 0 000 0011224555554432211 01122357899999999653 3456777888888888
Q ss_pred EEEEeec
Q 015158 215 VGVFSAT 221 (412)
Q Consensus 215 ~i~~SAT 221 (412)
+|++.-.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8877665
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.24 E-value=1.6e-05 Score=79.39 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=79.4
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.++. +++.|++|+..+..++..++.+++|+|||.+. -.++..+........+++++||-.-+..+.+.. +.
T Consensus 320 ~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~ 390 (720)
T TIGR01448 320 LRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GL 390 (720)
T ss_pred cCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CC
Confidence 3444 99999999999998889999999999999765 333333332211246888999977655443221 21
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-----CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCC
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-----QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPP 211 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-----~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~ 211 (412)
.. .|.++++..... ........++||+||++.+.. ..+..++..++.
T Consensus 391 ~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~ 442 (720)
T TIGR01448 391 TA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPD 442 (720)
T ss_pred cc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCC
Confidence 11 111111111000 000123568999999997643 345666777888
Q ss_pred CceEEEEeec
Q 015158 212 KIQVGVFSAT 221 (412)
Q Consensus 212 ~~~~i~~SAT 221 (412)
+.++|++.-+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888887665
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.22 E-value=2.5e-05 Score=72.67 Aligned_cols=135 Identities=16% Similarity=0.214 Sum_probs=77.8
Q ss_pred EECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH-----h--hccc-----CcEEEEEEcCcchH
Q 015158 81 QQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA-----L--GDYL-----GVKVHACVGGTSVR 148 (412)
Q Consensus 81 v~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~-----~--~~~~-----~~~~~~~~~~~~~~ 148 (412)
..++||||||+++...++.....+. ...|+.|......+.+...+.. + .... .+++..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~----- 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN----- 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc-----
Confidence 4689999999998888887766543 4577778777776666554422 1 0000 111211111
Q ss_pred HHHHHhcCCCcEEEeChHHHHHHHHcCCCCC------CCce-EEEEeCCchhhccC---------cHHHHHHHH-Hh--C
Q 015158 149 EDQRILSSGVHVVVGTPGRVFDMLRRQSLRP------DNIR-IFVLDEADEMLSRG---------FKDQIYDIF-QL--L 209 (412)
Q Consensus 149 ~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~------~~~~-~iiiDE~h~~~~~~---------~~~~~~~i~-~~--~ 209 (412)
..-......|+++|.+.|...+.+.+.+. .+.. +++-||+|++-... ....|.... .. -
T Consensus 75 --fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 75 --FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred --cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 11133456899999999988877654331 2222 57789999975321 112222221 11 2
Q ss_pred CCCceEEEEeecCCh
Q 015158 210 PPKIQVGVFSATMPP 224 (412)
Q Consensus 210 ~~~~~~i~~SAT~~~ 224 (412)
.+.--++..|||.+.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 234457888999874
No 196
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.12 E-value=2.1e-05 Score=61.42 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHhcCC-CcEEEEcCCCcCCCCCCC--CCEEEEccCCCC------------------------------
Q 015158 312 MDQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ------------------------------ 358 (412)
Q Consensus 312 ~~~~~r~~~~~~f~~g~-~~vlv~t~~~~~G~d~~~--~~~vi~~~~~~s------------------------------ 358 (412)
.+..+...+++.|.+.. ..||+++..+.+|+|+|+ ++.||+.+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 44446788999998754 379999988999999996 678888887631
Q ss_pred -hhhHHHhhhhcccCCCCceEEEEecc
Q 015158 359 -PENYLHRIGRSGRFGRKGVAINFVTR 384 (412)
Q Consensus 359 -~~~~~Q~~GR~~R~g~~g~~~~~~~~ 384 (412)
...+.|.+||+.|...+-.++++++.
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEec
Confidence 23468999999998766555656554
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=69.87 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=88.0
Q ss_pred HCCCCCChHHHHhhhhhhhcCc--cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
.+|+...+..|+-|+..++... -+.+.++.|||||+.++.+.+......+.-.++++.=|+..+.+++
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI---------- 292 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI---------- 292 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc----------
Confidence 4688878889999999999863 4567899999999999888888877666666888888877654321
Q ss_pred cCcEEEEEEcCcchH--HHHHHhcCCCcEEE----eChHHHHHHHHcCCCCC--------C--CceEEEEeCCchhhccC
Q 015158 134 LGVKVHACVGGTSVR--EDQRILSSGVHVVV----GTPGRVFDMLRRQSLRP--------D--NIRIFVLDEADEMLSRG 197 (412)
Q Consensus 134 ~~~~~~~~~~~~~~~--~~~~~~~~~~~iii----~T~~~l~~~~~~~~~~~--------~--~~~~iiiDE~h~~~~~~ 197 (412)
..+.|....+ .|-.....+-..+. ++.+.+...+.+..+.. + .-.+||+|||+.+.
T Consensus 293 -----GfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT--- 364 (436)
T COG1875 293 -----GFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT--- 364 (436)
T ss_pred -----CcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---
Confidence 1111111100 00000000000000 11333444433332221 1 12489999999863
Q ss_pred cHHHHHHHHHhCCCCceEEEEee
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
..++..++....++.+++++.-
T Consensus 365 -pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 365 -PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred -HHHHHHHHHhccCCCEEEEcCC
Confidence 5678888888888887666543
No 198
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.06 E-value=1.9e-05 Score=61.78 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=61.4
Q ss_pred HHHHHHHHhcCCC----eeEEecCCCCHHHHHHHHHHHhcCCC---cEEEEcCC--CcCCCCCCC--CCEEEEccCCCC-
Q 015158 291 VDWLTDKMRSRDH----TVSATHGDMDQNTRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ- 358 (412)
Q Consensus 291 ~~~~~~~L~~~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~---~vlv~t~~--~~~G~d~~~--~~~vi~~~~~~s- 358 (412)
.+.+++.+++.+. ...+.-+. ...+...+++.|++..- .||+++.. +.+|+|+|+ ++.||+.+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGK-DSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECC-CCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 4556666655432 12222222 22344788888887533 68888876 999999996 678888887731
Q ss_pred ------------------------------hhhHHHhhhhcccCCCCceEEEEecc
Q 015158 359 ------------------------------PENYLHRIGRSGRFGRKGVAINFVTR 384 (412)
Q Consensus 359 ------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~ 384 (412)
...+.|.+||+.|...+-.++++++.
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 12458999999999766556666654
No 199
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.02 E-value=0.00013 Score=65.83 Aligned_cols=133 Identities=17% Similarity=0.203 Sum_probs=82.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
++.+.++||||.|||++..=.++..........-.||.+.|=-.+ ..++++.++..+++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHhCCce-----------------
Confidence 567889999999999876544444442222233455555543322 2455666666556655
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch-hhccCcHHHHHHHHHhCCCCceEEEEeecCCh-HHHHHHHHh
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE-MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPP-EALEITRKF 233 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~-~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~~~ 233 (412)
.++-++.-|...+.. +.+.++|.+|=+-+ ..+......+..+.....+....+.+|||... ++.+.+..+
T Consensus 264 ----~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f 335 (407)
T COG1419 264 ----EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQF 335 (407)
T ss_pred ----EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHh
Confidence 455566666555542 34679999997664 33444556777777777666678999999865 445555555
Q ss_pred cC
Q 015158 234 MN 235 (412)
Q Consensus 234 ~~ 235 (412)
..
T Consensus 336 ~~ 337 (407)
T COG1419 336 SL 337 (407)
T ss_pred cc
Confidence 43
No 200
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.96 E-value=2.2e-05 Score=71.15 Aligned_cols=122 Identities=24% Similarity=0.162 Sum_probs=77.1
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
+++-|.+++.. ..+.++|.|+.|||||.+.+.-+...+... ....+++++++|+..+.++.+.+...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 57889999988 667899999999999999887777666554 4556899999999999999888887543221100
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC--CCceEEEEeCCc
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP--DNIRIFVLDEAD 191 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~--~~~~~iiiDE~h 191 (412)
...............+.|.|.+.|...+.+..... -.-.+-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00001112222335689999988866443311110 112356666665
No 201
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.91 E-value=0.00023 Score=71.55 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=74.4
Q ss_pred CCCCChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 58 GFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
++. +++-|++|+..++.+ +-.+|.+++|+|||.+.- ++...+.. .+.++++++||-.-+..+.+. .+.
T Consensus 350 ~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~--~g~~V~~~ApTg~Aa~~L~~~-------~g~ 418 (744)
T TIGR02768 350 HYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA--AGYRVIGAALSGKAAEGLQAE-------SGI 418 (744)
T ss_pred cCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh--CCCeEEEEeCcHHHHHHHHhc-------cCC
Confidence 444 899999999999874 667899999999997643 33333322 245799999997655444321 122
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHh-CCCCceE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQL-LPPKIQV 215 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~ 215 (412)
... |..++...+..........++||+||+-.+.... +..++.. ...+.++
T Consensus 419 ~a~------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~----~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 419 ESR------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQ----MARVLKEAEEAGAKV 470 (744)
T ss_pred cee------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEE
Confidence 211 2222211112222223567899999999765433 3344442 2346667
Q ss_pred EEEeec
Q 015158 216 GVFSAT 221 (412)
Q Consensus 216 i~~SAT 221 (412)
|++.-+
T Consensus 471 iLVGD~ 476 (744)
T TIGR02768 471 VLVGDP 476 (744)
T ss_pred EEECCh
Confidence 666644
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00032 Score=64.37 Aligned_cols=122 Identities=14% Similarity=0.102 Sum_probs=67.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEc-CC-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
+.+++.+|||+|||.+..-.+...... ...+.++.+++ .+ +.-+ .+++..++...++++..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa---~eQL~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA---KKQIQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH---HHHHHHHhhcCCcceEe-------------
Confidence 567889999999998875444332211 11233455544 33 2222 22245555444554421
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCCC-ceEEEEeecCChHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPPK-IQVGVFSATMPPEA 226 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~~-~~~i~~SAT~~~~~ 226 (412)
+-+++.+...+.. ..+.++|++|++.+..... ....+..++...... ..++.+|||.....
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 1133444444432 2468999999999754221 223455555544433 56899999987543
No 203
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.84 E-value=5.2e-05 Score=76.48 Aligned_cols=145 Identities=18% Similarity=0.034 Sum_probs=97.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccC---------------CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYG---------------LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
|+.+++.-..|+|||...+...+...... ...+..|||||. ++..||.+++..-.... +.+..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEEE
Confidence 56778899999999977655444332111 112469999996 77888999998876543 67777
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCC---------C-----------CceEEEEeCCchhhccCcHH
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRP---------D-----------NIRIFVLDEADEMLSRGFKD 200 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~---------~-----------~~~~iiiDE~h~~~~~~~~~ 200 (412)
+.|-.+...........+|||+|||+.|.+.+.....+. + .|=.|++||++.+-.. ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 777665544444445678999999999987665431110 0 1225999999976543 35
Q ss_pred HHHHHHHhCCCCceEEEEeecCChH
Q 015158 201 QIYDIFQLLPPKIQVGVFSATMPPE 225 (412)
Q Consensus 201 ~~~~i~~~~~~~~~~i~~SAT~~~~ 225 (412)
...+....++ ....=++|+||-..
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhh
Confidence 5556666665 44478999998654
No 204
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.84 E-value=5e-05 Score=58.95 Aligned_cols=37 Identities=24% Similarity=0.254 Sum_probs=25.8
Q ss_pred eEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 183 RIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 183 ~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
.+||+||+|++. . ...+..+........-.+.+++++
T Consensus 89 ~~lviDe~~~l~--~-~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--S-DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--T-HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--C-HHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999964 2 455555555555555567777776
No 205
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0005 Score=62.57 Aligned_cols=170 Identities=19% Similarity=0.179 Sum_probs=87.5
Q ss_pred CChhhhccccccCCCCHHHHHHHHHC-C----CC---CChHHHHhhhhh-----------hhcCccEEEECCCCCCchhH
Q 015158 32 TSYDEVYDTFDAMGLQENLLRGIYAY-G----FE---KPSAIQQRGIVP-----------FCKGLDVIQQAQSGTGKTAT 92 (412)
Q Consensus 32 ~~~~~~~~~f~~~~l~~~~~~~l~~~-~----~~---~l~~~Q~~a~~~-----------~~~~~~~lv~~~tGsGKT~~ 92 (412)
+.....+..+...++++.+.+.|-.. + .. ..+.+....+.. +.++..+++.+|||+|||++
T Consensus 74 p~~~~l~~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTt 153 (374)
T PRK14722 74 PVHGALTKYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTT 153 (374)
T ss_pred cHHHHHHHHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHH
Confidence 33445567788889998888877442 1 11 123333333322 11256789999999999987
Q ss_pred hHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHH
Q 015158 93 FCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML 172 (412)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~ 172 (412)
....+....... ...++.+++. ...-.--.++++.++...++.+... -+...+...+
T Consensus 154 iakLA~~~~~~~-G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~~~~---------------------~~~~~l~~~l 210 (374)
T PRK14722 154 TAKLAARCVMRF-GASKVALLTT-DSYRIGGHEQLRIFGKILGVPVHAV---------------------KDGGDLQLAL 210 (374)
T ss_pred HHHHHHHHHHhc-CCCeEEEEec-ccccccHHHHHHHHHHHcCCceEec---------------------CCcccHHHHH
Confidence 755444333221 1124544442 2221112344444444445444322 2222232223
Q ss_pred HcCCCCCCCceEEEEeCCchhhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 173 RRQSLRPDNIRIFVLDEADEMLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 173 ~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
.+ ..+.++|+||++-.... ......+..+.....+...++.+|||...+...
T Consensus 211 ~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 211 AE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred HH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHH
Confidence 21 23568999999975321 112233333333233345689999998765544
No 206
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.77 E-value=0.00058 Score=69.92 Aligned_cols=126 Identities=17% Similarity=0.105 Sum_probs=76.3
Q ss_pred CCCCCChHHHHhhhhhhhcCc-cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 57 YGFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.++. |++-|++|+..++.++ .++|.++.|+|||.+. -.+...+.. .+.+++.++||-.-+..+.+ ..+
T Consensus 343 ~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tG 411 (988)
T PRK13889 343 RGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSG 411 (988)
T ss_pred cCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccC
Confidence 4555 9999999999999854 5789999999999763 334433332 24579999998765443322 112
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC-CCCce
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL-PPKIQ 214 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~-~~~~~ 214 (412)
+.. .|..+|..-...........++|||||+-.+... .+..++... +.+.+
T Consensus 412 i~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~gar 463 (988)
T PRK13889 412 IAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAK 463 (988)
T ss_pred cch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCE
Confidence 211 1222332211122222345689999999976433 344455433 45677
Q ss_pred EEEEeec
Q 015158 215 VGVFSAT 221 (412)
Q Consensus 215 ~i~~SAT 221 (412)
+|++.-+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 7777666
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.76 E-value=6.5e-05 Score=62.34 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=25.8
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
.-.++.+|+|+|||..++..+......+ .+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 3468899999999987766665554433 47887766
No 208
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.74 E-value=0.00014 Score=71.66 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=79.8
Q ss_pred CChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEE
Q 015158 61 KPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 139 (412)
.|+..|++|+..++.. ...+|.|=+|+|||.+....+-.....+ +++|+.+-|..-++.+.-.+..+ ++...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~----~i~~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGF----GIYIL 741 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhcc----Cccee
Confidence 5889999999997765 4578899999999977655444333333 48998888877777776666664 33333
Q ss_pred EEEcCcchHHH-----------------HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 140 ACVGGTSVRED-----------------QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 140 ~~~~~~~~~~~-----------------~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
.+-........ ...+-+...||.+|.-.+.+.+. ..+.||+.|+|||-++.
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEccccccc
Confidence 22222221111 12233556788888655544333 34579999999999864
No 209
>PRK08181 transposase; Validated
Probab=97.64 E-value=0.00061 Score=59.45 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=64.8
Q ss_pred ChHHHHhhhh----hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 62 PSAIQQRGIV----PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 62 l~~~Q~~a~~----~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
+...|..++. .+..++++++.||+|+|||..+..........+ .+++++ +...|..+.......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~-~~~~L~~~l~~a~~~-------- 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFT-RTTDLVQKLQVARRE-------- 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC---Cceeee-eHHHHHHHHHHHHhC--------
Confidence 3456666663 334678999999999999966544333333332 355554 334444433211000
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCCCceEE
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i 216 (412)
.+.+.+...+ ...+++|+||.+...... ....+..+++......++|
T Consensus 156 -------------------------~~~~~~l~~l-------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~I 203 (269)
T PRK08181 156 -------------------------LQLESAIAKL-------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSIL 203 (269)
T ss_pred -------------------------CcHHHHHHHH-------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEE
Confidence 1222222222 257899999999754332 2345666666554445555
Q ss_pred EEeecCCh
Q 015158 217 VFSATMPP 224 (412)
Q Consensus 217 ~~SAT~~~ 224 (412)
..|-.++.
T Consensus 204 iTSN~~~~ 211 (269)
T PRK08181 204 ITANQPFG 211 (269)
T ss_pred EEcCCCHH
Confidence 55555543
No 210
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.61 E-value=0.00022 Score=61.63 Aligned_cols=65 Identities=22% Similarity=0.350 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCCcEEEEcCCCcCCCCCCC--------CCEEEEccCCCChhhHHHhhhhcccCCCCc-eEEEEe
Q 015158 318 DIIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYLHRIGRSGRFGRKG-VAINFV 382 (412)
Q Consensus 318 ~~~~~~f~~g~~~vlv~t~~~~~G~d~~~--------~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g-~~~~~~ 382 (412)
....+.|.+|+.+|+|.+.+.++|+.+.. -++.|...+|||....+|..||+.|.|+.. ..|.++
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 35678899999999999999999999763 345678899999999999999999998743 334433
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.60 E-value=0.00025 Score=58.90 Aligned_cols=132 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 157 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (412)
-+++++|||+|||.+..-.+...... +.++.+++--.-- .--.++++.++...++++........
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R-~ga~eQL~~~a~~l~vp~~~~~~~~~----------- 67 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYR-IGAVEQLKTYAEILGVPFYVARTESD----------- 67 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSS-THHHHHHHHHHHHHTEEEEESSTTSC-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCC-ccHHHHHHHHHHHhccccchhhcchh-----------
Confidence 46889999999998875544444333 3455555532111 11244455555545665543221111
Q ss_pred CcEEEeChHH-HHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 158 VHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 158 ~~iii~T~~~-l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
+.. +...++. ...+++++|++|-+-+.. +......+..+.....+....+.+|||...+.......+
T Consensus 68 -------~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~ 136 (196)
T PF00448_consen 68 -------PAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF 136 (196)
T ss_dssp -------HHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH
T ss_pred -------hHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH
Confidence 111 1122221 111357899999886533 223456677777777777789999999987655544444
No 212
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0014 Score=59.59 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=68.0
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC-CH--HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP-TR--ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~~--~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
+.+++.||+|+|||......+...... +.++.++.. +. +-.+| ++.+....++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv--------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV--------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHH----HHHHhhhcCCcE---------------
Confidence 467899999999998765544433322 234554443 22 23333 334433223332
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCceEEEEeecCCh-HHHHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPP-EALEITR 231 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~ 231 (412)
+...++..+...+..... ..++++|++|-+-+.... .....+..++....+...++.+|||... +....+.
T Consensus 300 ------~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 223355556554432211 125799999988663322 2234455555544445557779998765 3344444
Q ss_pred Hh
Q 015158 232 KF 233 (412)
Q Consensus 232 ~~ 233 (412)
.+
T Consensus 373 ~F 374 (436)
T PRK11889 373 NF 374 (436)
T ss_pred Hh
Confidence 43
No 213
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.58 E-value=0.0018 Score=66.87 Aligned_cols=137 Identities=18% Similarity=0.140 Sum_probs=79.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
.++.........++. |++-|++|+..+.. ++-.+|.|+.|+|||.+.- .+...+.. .+.+++.++|+-.-+..+.
T Consensus 367 v~~~~l~a~~~~~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~--~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA--AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH--cCCeEEEEcCcHHHHHHHH
Confidence 334444444344554 99999999999865 4667899999999997653 33333322 2457999999876554433
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHH
Q 015158 125 KVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYD 204 (412)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 204 (412)
+- .|+.. .|..+|..........+..-++|||||+..+.. ..+..
T Consensus 443 ----e~---~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~ 487 (1102)
T PRK13826 443 ----KE---AGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMAL 487 (1102)
T ss_pred ----Hh---hCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHH
Confidence 21 13222 122222111111112234567999999997543 34445
Q ss_pred HHHhCC-CCceEEEEeec
Q 015158 205 IFQLLP-PKIQVGVFSAT 221 (412)
Q Consensus 205 i~~~~~-~~~~~i~~SAT 221 (412)
++...+ .+.++|++.-+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 555543 46777777666
No 214
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.57 E-value=0.0012 Score=52.11 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.1
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
++.+++.||+|+|||..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999996553
No 215
>PRK06526 transposase; Provisional
Probab=97.55 E-value=0.00043 Score=60.03 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=58.8
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (412)
.+..+.++++.||+|+|||..+..........+ .+++++.. ..+.++ +.... .
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~-~~l~~~----l~~~~----------~--------- 146 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATA-AQWVAR----LAAAH----------H--------- 146 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhH-HHHHHH----HHHHH----------h---------
Confidence 344568999999999999977654444333333 35555322 233332 22110 0
Q ss_pred HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCCCceEEEEeecCChHH
Q 015158 152 RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPPKIQVGVFSATMPPEA 226 (412)
Q Consensus 152 ~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 226 (412)
. .+....... ....+++|+||+|...... ....+..++.....+..+|+.|..+....
T Consensus 147 ----~------~~~~~~l~~-------l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 147 ----A------GRLQAELVK-------LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred ----c------CcHHHHHHH-------hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 0 011111111 1356899999999754222 22345555544333455777777765543
No 216
>PRK14974 cell division protein FtsY; Provisional
Probab=97.54 E-value=0.0019 Score=58.24 Aligned_cols=130 Identities=24% Similarity=0.341 Sum_probs=72.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC---HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT---RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~---~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
.-+++.+++|+|||.+..-.+. .+.. .+.+++++... ..-.+|+.. +....++.+.....+..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~--~g~~V~li~~Dt~R~~a~eqL~~----~a~~lgv~v~~~~~g~d------- 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK--NGFSVVIAAGDTFRAGAIEQLEE----HAERLGVKVIKHKYGAD------- 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH--cCCeEEEecCCcCcHHHHHHHHH----HHHHcCCceecccCCCC-------
Confidence 3577899999999986544333 2322 22356555432 233444433 33333544432111111
Q ss_pred hcCCCcEEEeChHH-HHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHH
Q 015158 154 LSSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 (412)
Q Consensus 154 ~~~~~~iii~T~~~-l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 231 (412)
|.. +...+.... ..+.++|++|.+++.. +......+..+.....+...++.++||...+......
T Consensus 207 -----------p~~v~~~ai~~~~--~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 207 -----------PAAVAYDAIEHAK--ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred -----------HHHHHHHHHHHHH--hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 111 112121111 1356899999999865 3335567777777777788889999998766555555
Q ss_pred Hh
Q 015158 232 KF 233 (412)
Q Consensus 232 ~~ 233 (412)
.+
T Consensus 274 ~f 275 (336)
T PRK14974 274 EF 275 (336)
T ss_pred HH
Confidence 44
No 217
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.51 E-value=1e-05 Score=78.06 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=58.5
Q ss_pred HHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhc---CCCcEEEEcCCCcCC
Q 015158 267 ETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS---GSSRVLITTDLLARG 341 (412)
Q Consensus 267 ~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~---g~~~vlv~t~~~~~G 341 (412)
..|...+++. ...+++||..-.+..+-+.+++...+ ....+.|...-.+|...+.+|+. ....++++|.+.+.|
T Consensus 618 ~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 618 TLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 3344444443 33689999999999998888888878 88889999999999999999985 356788999988766
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.51 E-value=0.00038 Score=54.61 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=26.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
++.+++.+|+|+|||..+...+. .+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~-~~~~~--~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR-ELGPP--GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh-ccCCC--CCCEEEECCEEcc
Confidence 46789999999999987644333 32221 1246777766543
No 219
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.38 E-value=0.0038 Score=58.49 Aligned_cols=127 Identities=19% Similarity=0.210 Sum_probs=65.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhh-ccCCCceeEEEEc-CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQL-DYGLVECQALVLA-PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~-~~~~~~~~~lil~-P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
++.+++.+|||+|||.+....+.... .. .+.++.++. .+... ...+++..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~--~a~eqL~~~a~~~~vp~~-------------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRI--GAVEQLKTYAKIMGIPVE-------------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHH--HHHHHHHHHHHHhCCceE--------------
Confidence 45678899999999977654443332 12 123455544 32111 112334444333343331
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-cCcHHHHHHHHH-hCCCCceEEEEeecCChHHHHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-RGFKDQIYDIFQ-LLPPKIQVGVFSATMPPEALEITR 231 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~i~~-~~~~~~~~i~~SAT~~~~~~~~~~ 231 (412)
.+.+++.+...+.. ..+.++|+||.+-.... ......+..++. ...+....++++||........+.
T Consensus 283 -------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~ 351 (424)
T PRK05703 283 -------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY 351 (424)
T ss_pred -------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH
Confidence 12333444444432 23579999999865321 112344555555 222345578899998765444433
No 220
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.37 E-value=0.00074 Score=64.71 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=82.8
Q ss_pred HHHHhhhhhhhc-----C----ccEEEECCCCCCchhHhHHHHHHh-hccCCCceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 64 AIQQRGIVPFCK-----G----LDVIQQAQSGTGKTATFCSGILQQ-LDYGLVECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 64 ~~Q~~a~~~~~~-----~----~~~lv~~~tGsGKT~~~~~~~~~~-~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
|||+-++..++. | +.+++..|-|-|||......++.. +..+..+..+++++++..-+...++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 678877777662 2 467889999999996654443333 344455678999999999999999988887543
Q ss_pred cCcEEEEEEcCcchHHHHHH-hcCCCcEEEeChHHHHHHHHc--CCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC
Q 015158 134 LGVKVHACVGGTSVREDQRI-LSSGVHVVVGTPGRVFDMLRR--QSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP 210 (412)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~-~~~~~~iii~T~~~l~~~~~~--~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~ 210 (412)
....-... . .+. ......|.....+.+...+.. ....-.+.+++|+||+|...+......+..-....+
T Consensus 81 ~~~l~~~~-~-------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~ 152 (477)
T PF03354_consen 81 SPELRKRK-K-------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP 152 (477)
T ss_pred Chhhccch-h-------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC
Confidence 21111000 0 000 001122333222222222111 222334668999999998766544444444444433
Q ss_pred CCceEEEEeec
Q 015158 211 PKIQVGVFSAT 221 (412)
Q Consensus 211 ~~~~~i~~SAT 221 (412)
...-++..||.
T Consensus 153 ~pl~~~ISTag 163 (477)
T PF03354_consen 153 NPLIIIISTAG 163 (477)
T ss_pred CceEEEEeCCC
Confidence 33333334443
No 221
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.35 E-value=0.0004 Score=59.89 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=34.1
Q ss_pred CCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 179 PDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
...+..||+||||.+.... ...+.+.+...+...++++++.-+.
T Consensus 127 ~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 127 CPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 3567899999999876554 6778888888877888888877653
No 222
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.26 E-value=0.00053 Score=68.40 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=56.2
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
.|++-|++|+.+. ...++|.|++|||||.+...-+...+.. +....++|+++-|+.-+.++.+.+....
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3789999999764 4578999999999999987777776653 4345689999999999999998887754
No 223
>PHA02533 17 large terminase protein; Provisional
Probab=97.26 E-value=0.0023 Score=61.63 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=73.9
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc--EEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV--KVH 139 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~--~~~ 139 (412)
|+|+|+..+..+..++..++..+-..|||.+....++..... .++..+++++|+..-+...++.++........ ...
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~-~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~~ 138 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF-NKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQPG 138 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhcc
Confidence 899999999988767777899999999997776434333222 23458999999999888888877765432211 100
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
+..... ..-.+.++..|.+.|.+. ....-.+..++++||+|.+.+
T Consensus 139 -i~~~~~---~~I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 139 -IVEWNK---GSIELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred -eeecCc---cEEEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 000000 000012344554544221 112234567899999997643
No 224
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.23 E-value=0.00059 Score=65.90 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=93.4
Q ss_pred CChHHHHhhhhhhhc--------Cc--cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 61 KPSAIQQRGIVPFCK--------GL--DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~--------~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.+...|.+|+-...+ |. .++|-...|-||-.+..-.|+..... ..+++||+.-+..|--+..+.++..
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk--GRKrAlW~SVSsDLKfDAERDL~Di 341 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK--GRKRALWFSVSSDLKFDAERDLRDI 341 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc--ccceeEEEEeccccccchhhchhhc
Confidence 477889988876554 22 35666666666664443334444333 3368999999999988888888876
Q ss_pred hcccCcEEEEEEcCcc--hHHHHHHhcCCCcEEEeChHHHHHHHHcCC------------CCCCCc-eEEEEeCCchhhc
Q 015158 131 GDYLGVKVHACVGGTS--VREDQRILSSGVHVVVGTPGRVFDMLRRQS------------LRPDNI-RIFVLDEADEMLS 195 (412)
Q Consensus 131 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~iii~T~~~l~~~~~~~~------------~~~~~~-~~iiiDE~h~~~~ 195 (412)
.. .++.|..+.--.- +... ....-+-.|+++||..|.-...... +.-..+ ++||+||||...+
T Consensus 342 gA-~~I~V~alnK~KYakIss~-en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 342 GA-TGIAVHALNKFKYAKISSK-ENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred CC-CCccceehhhccccccccc-ccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 43 2455544321100 0000 0011224799999977643222100 011122 5899999998654
Q ss_pred c---------CcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 196 R---------GFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 196 ~---------~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
. .....+..+...+| +.+++.-|||-
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 1 13466667777775 78899999993
No 225
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.20 E-value=0.0013 Score=65.24 Aligned_cols=70 Identities=24% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
..|++-|++|+..- ..+++|.|+.|||||.+...-+...+..+ ....++++++.++..+..+.+++....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 45999999999643 35689999999999998876665555433 234589999999999999998887644
No 226
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.16 E-value=0.052 Score=60.66 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=108.6
Q ss_pred ChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEE
Q 015158 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVH 139 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~ 139 (412)
+++-|++|+..++.. +-.+|.++.|+|||.+. -.+...+.. .+.+++.++|+..-+..+.+..... ..
T Consensus 430 Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g~~-------A~ 499 (1960)
T TIGR02760 430 LSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIPRL-------AS 499 (1960)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhcch-------hh
Confidence 889999999998875 56789999999999764 333333322 3458999999987665555432211 10
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC-CCCceEEEE
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL-PPKIQVGVF 218 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~ 218 (412)
+...+...... ..-..|...|. .....+..-++|||||+-.+.. ..+..++... +.+.++|++
T Consensus 500 ------Ti~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 500 ------TFITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred ------hHHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCEEEEE
Confidence 01111111111 11122333333 1222234568999999997643 3455555544 467888888
Q ss_pred eecC--C----hHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHH-HHHHHhc-CCCcEEEEEcchhH
Q 015158 219 SATM--P----PEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETL-CDLYETL-AITQSVIFVNTRRK 290 (412)
Q Consensus 219 SAT~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~-~~~k~lif~~~~~~ 290 (412)
.-+- + ......+.... -+ .+...........+ ....... ......+ ..++... ...+++|+..+.+.
T Consensus 564 GD~~QL~sV~aG~~f~~L~~~g-v~-t~~l~~i~rq~~~v--~i~~~~~-~~r~~~ia~~y~~L~~~r~~tliv~~t~~d 638 (1960)
T TIGR02760 564 NDSAQRQGMSAGSAIDLLKEGG-VT-TYAWVDTKQQKASV--EISEAVD-KLRVDYIASAWLDLTPDRQNSQVLATTHRE 638 (1960)
T ss_pred cChhhcCccccchHHHHHHHCC-Cc-EEEeecccccCcce--eeeccCc-hHHHHHHHHHHHhcccccCceEEEcCCcHH
Confidence 7762 1 23333444322 11 12221111111111 1111111 2222223 3333322 23468999999888
Q ss_pred HHHHHHHHhc
Q 015158 291 VDWLTDKMRS 300 (412)
Q Consensus 291 ~~~~~~~L~~ 300 (412)
.+.+....+.
T Consensus 639 r~~Ln~~iR~ 648 (1960)
T TIGR02760 639 QQDLTQIIRN 648 (1960)
T ss_pred HHHHHHHHHH
Confidence 8777666653
No 227
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.14 E-value=0.00069 Score=62.44 Aligned_cols=55 Identities=27% Similarity=0.273 Sum_probs=40.8
Q ss_pred ChHHHHhhhhhh------hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 62 PSAIQQRGIVPF------CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 62 l~~~Q~~a~~~~------~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
|++-|++++..+ .++.+++|.|+-|+|||..+- ++...+.. .+..+++++||-.-
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGKKVLVTAPTGIA 62 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccceEEEecchHHH
Confidence 788899999988 678899999999999997653 33333322 33578888887653
No 228
>PRK05642 DNA replication initiation factor; Validated
Probab=97.12 E-value=0.0016 Score=56.00 Aligned_cols=44 Identities=16% Similarity=0.404 Sum_probs=29.9
Q ss_pred CceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 181 NIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
+.+++|+|++|.+... .+...+..+++.+..+.+.+++|++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5679999999976533 3456677777766554456677777544
No 229
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.09 E-value=0.0043 Score=59.13 Aligned_cols=106 Identities=12% Similarity=0.217 Sum_probs=56.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+.+++.||+|+|||..+. ++...+....++.+++++.. ..+..+....+.. +
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~-----~--------------------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN-----N--------------------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc-----C---------------------
Confidence 458999999999997653 34444443323456666643 3444433322211 0
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
+.+.+...+ .+.+++++||+|.+.... ....+..++..+......+++|++.++
T Consensus 201 -------~~~~~~~~~-------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p 255 (450)
T PRK00149 201 -------TMEEFKEKY-------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPP 255 (450)
T ss_pred -------cHHHHHHHH-------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 112222222 257899999999875432 223444554444333233555555444
No 230
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.08 E-value=0.002 Score=54.73 Aligned_cols=107 Identities=18% Similarity=0.270 Sum_probs=60.3
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+.+++.||+|+|||-. +.++.+.+....++.+++++... .......+.+..
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 3589999999999974 45555555443345567776542 333322221111
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCC-CCceEEEEeecCChH
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLP-PKIQVGVFSATMPPE 225 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~-~~~~~i~~SAT~~~~ 225 (412)
...+.+...+ ...+++++|++|.+.... +...+..++..+. .+.++|+.|..+|..
T Consensus 86 ------~~~~~~~~~~-------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 ------GEIEEFKDRL-------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp ------TSHHHHHHHH-------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred ------ccchhhhhhh-------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 1122333322 368999999999876542 3456666665553 355666666566543
No 231
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.07 E-value=0.0036 Score=59.27 Aligned_cols=108 Identities=12% Similarity=0.182 Sum_probs=59.5
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+.+++.|++|+|||..+ .++.+.+....++.+++++.+ ..+..+....+..- .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~-----~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKT-----H-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHh-----h--------------------
Confidence 45889999999999654 455555544334557777655 45554444433220 0
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
...+.+... ....+++|+||+|.+.... ....+..++..+....+.+.+|+..++
T Consensus 195 ------~~~~~~~~~-------~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 195 ------KEIEQFKNE-------ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred ------hHHHHHHHH-------hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 011112111 1357899999999875332 345566666554433334555544433
No 232
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.06 E-value=0.004 Score=58.49 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=24.5
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+.+++.||+|+|||..+ .++.+.+....++.+++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 45789999999999765 34444444333345677764
No 233
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.026 Score=53.68 Aligned_cols=160 Identities=16% Similarity=0.187 Sum_probs=78.5
Q ss_pred hhhccccccCCCCHHHHHHHHHCC---C--CCChHHHHhhhhh---------hhcCccEEEECCCCCCchhHhHHHHHHh
Q 015158 35 DEVYDTFDAMGLQENLLRGIYAYG---F--EKPSAIQQRGIVP---------FCKGLDVIQQAQSGTGKTATFCSGILQQ 100 (412)
Q Consensus 35 ~~~~~~f~~~~l~~~~~~~l~~~~---~--~~l~~~Q~~a~~~---------~~~~~~~lv~~~tGsGKT~~~~~~~~~~ 100 (412)
...+..+...++++.+.+.|...- . ...+.+=...+.. +..|+.+.+.+|+|+|||......+...
T Consensus 295 ~~l~~~L~~~Gvs~~la~~L~~~l~~~~~~~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 295 AQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhcccchhhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344567777888888888775421 1 1112121112211 2246778899999999997764433322
Q ss_pred hccCCCceeEEEEc-CC-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC
Q 015158 101 LDYGLVECQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLR 178 (412)
Q Consensus 101 ~~~~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~ 178 (412)
.... .+.++.++. .+ +.-. .+++..+....++.+... .+...+...+..
T Consensus 375 a~~~-~gkkVaLIdtDtyRigA---~EQLk~ya~iLgv~v~~a---------------------~d~~~L~~aL~~---- 425 (559)
T PRK12727 375 AAQH-APRDVALVTTDTQRVGG---REQLHSYGRQLGIAVHEA---------------------DSAESLLDLLER---- 425 (559)
T ss_pred HHhc-CCCceEEEecccccccH---HHHHHHhhcccCceeEec---------------------CcHHHHHHHHHH----
Confidence 2221 123454443 22 2211 222333333333322111 123334444432
Q ss_pred CCCceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 179 PDNIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
..++++|+||.+-..... .....+..+.... ....+++++++...
T Consensus 426 l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAtss~ 471 (559)
T PRK12727 426 LRDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANAHF 471 (559)
T ss_pred hccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCCCh
Confidence 235799999999753211 1122333333322 34557888888754
No 234
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.01 Score=48.12 Aligned_cols=104 Identities=21% Similarity=0.265 Sum_probs=63.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc-EEEEEEcCcchHHHHHHhc
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV-KVHACVGGTSVREDQRILS 155 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 155 (412)
+-.++.+|+.||||.-.+..+.+....+ .++++..|...- .+ +. .+....|. .
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g---~~v~vfkp~iD~---------R~----~~~~V~Sr~G~-~--------- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAG---MKVLVFKPAIDT---------RY----GVGKVSSRIGL-S--------- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcC---CeEEEEeccccc---------cc----ccceeeeccCC-c---------
Confidence 3458899999999998777666665554 488888885431 11 11 12222221 1
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL 209 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~ 209 (412)
...++|-+...+...+....... ..+.|.+||||.+ +......+.++.+.+
T Consensus 59 -~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~-~~~~v~~l~~lad~l 109 (201)
T COG1435 59 -SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF-DEELVYVLNELADRL 109 (201)
T ss_pred -ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC-CHHHHHHHHHHHhhc
Confidence 12466666666766666543322 2789999999964 344455666666654
No 235
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=97.01 E-value=0.0043 Score=58.39 Aligned_cols=152 Identities=13% Similarity=0.028 Sum_probs=86.1
Q ss_pred HCCCCCChHHHHhhhhhhhc------C----ccEEEECCCCCCchhHhH-HHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 56 AYGFEKPSAIQQRGIVPFCK------G----LDVIQQAQSGTGKTATFC-SGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~------~----~~~lv~~~tGsGKT~~~~-~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
.+++. +-|||+-++..+.. + +.++|..|-+-|||..+. +.....+.....+..+.+++|+..-+.+.+
T Consensus 57 ~~p~~-l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 57 GFPES-LEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCccc-cchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 33444 89999999999883 1 457999999999996544 333333334456678999999998888888
Q ss_pred HHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHH--cCCCCCCCceEEEEeCCchhhccCcHHHH
Q 015158 125 KVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLR--RQSLRPDNIRIFVLDEADEMLSRGFKDQI 202 (412)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~--~~~~~~~~~~~iiiDE~h~~~~~~~~~~~ 202 (412)
..++......+ ...........+..|...-.......+. ....+..+..+.|+||.|.+.... ..+
T Consensus 136 ~~ar~mv~~~~----------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~ 203 (546)
T COG4626 136 NPARDMVKRDD----------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMY 203 (546)
T ss_pred HHHHHHHHhCc----------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHH
Confidence 77776543322 0001110001111111111111111111 123334566799999999876542 334
Q ss_pred HHHHHhC--CCCceEEEEee
Q 015158 203 YDIFQLL--PPKIQVGVFSA 220 (412)
Q Consensus 203 ~~i~~~~--~~~~~~i~~SA 220 (412)
..+..-+ .++.++++.|-
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 4444333 34566666665
No 236
>PRK06921 hypothetical protein; Provisional
Probab=96.99 E-value=0.016 Score=50.82 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=24.4
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
+.++++.|++|+|||..+. +++..+... .+..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK-KGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCceEEEEEH
Confidence 5679999999999997653 344444321 1345666553
No 237
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0029 Score=59.39 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=15.9
Q ss_pred cEEEECCCCCCchhHhHHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGI 97 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~ 97 (412)
..++.||.|+|||.++-..+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998875433
No 238
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.97 E-value=0.0017 Score=65.58 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=57.2
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
..|++-|++|+.+- ...++|.|+.|||||.+...-+...+.. +.+..++|+++-|+..+.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999764 4579999999999999987777766643 33456899999999999999998887643
No 239
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.92 E-value=0.002 Score=64.81 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
|++-|++++.+. ..+++|.|+.|||||.+.+.-+...+.. +....++++++.|+.-+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~~--~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV--TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 788999998753 4679999999999999988877777653 3345679999999999999988887654
No 240
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.91 E-value=0.01 Score=47.78 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=24.7
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
+++.+++|+|||..+...+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcch
Confidence 578999999999766544443332 23467777665443
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=96.91 E-value=0.0033 Score=53.88 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=28.6
Q ss_pred CceEEEEeCCchhhcc-CcHHHHHHHHHhCCC-CceEEEEeecCChH
Q 015158 181 NIRIFVLDEADEMLSR-GFKDQIYDIFQLLPP-KIQVGVFSATMPPE 225 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 225 (412)
+.+++++||+|.+... .+...+..++..... +.+++++|++..+.
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 5689999999987532 234455565555443 34566777776543
No 242
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.89 E-value=0.0021 Score=65.03 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=56.6
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.|++-|++|+.+. ...++|.|+.|||||.+...-+...+.. +....++|+++-|+..+.++.+.+.++..
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4899999999754 4578999999999999887777766542 44456899999999999999998887643
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.89 E-value=0.0068 Score=51.94 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.8
Q ss_pred CccEEEECCCCCCchhHhHH
Q 015158 76 GLDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~ 95 (412)
+..+++.||+|+|||..+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 56899999999999977644
No 244
>PRK08727 hypothetical protein; Validated
Probab=96.88 E-value=0.0058 Score=52.54 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=25.6
Q ss_pred CceEEEEeCCchhhccC-cHHHHHHHHHhCCC-CceEEEEeecCChH
Q 015158 181 NIRIFVLDEADEMLSRG-FKDQIYDIFQLLPP-KIQVGVFSATMPPE 225 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 225 (412)
+.+++|+||+|.+.... ....+..++..... ..++|+.|..++..
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDG 139 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhh
Confidence 56799999999876432 23445555554433 33455545444443
No 245
>PRK12377 putative replication protein; Provisional
Probab=96.83 E-value=0.012 Score=50.75 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=26.0
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
.++++.||+|+|||..+. ++...+... +..++++ +...|..++.
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~~--g~~v~~i-~~~~l~~~l~ 145 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLAK--GRSVIVV-TVPDVMSRLH 145 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCCeEEE-EHHHHHHHHH
Confidence 578999999999997654 344343322 2344443 4445555443
No 246
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.80 E-value=0.00076 Score=54.43 Aligned_cols=124 Identities=19% Similarity=0.226 Sum_probs=52.3
Q ss_pred EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCc
Q 015158 80 IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVH 159 (412)
Q Consensus 80 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (412)
++.++-|-|||.+.=+++...+..+ ..+++|.+|+..-++..++.+..-....+.+..... ...........+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLRFNKQR 75 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-----------------------------CCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccccccce
Confidence 4789999999976544443333332 257999999998777777655543332232220000 00000111123456
Q ss_pred EEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 160 VVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 160 iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
|-+..|+.+... ....|++|||||=.+. ...+..++... ..+++|.|..
T Consensus 76 i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 76 IEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred EEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 777777766432 1245899999998642 34455554332 3667777764
No 247
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.80 E-value=0.0075 Score=58.24 Aligned_cols=134 Identities=11% Similarity=0.112 Sum_probs=79.1
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc--CcEEEEEEcCcchHHHHHHh
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL--GVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (412)
+-.++..|--.|||+... +++..+.....+-+++|++|....++..++++....... +..+....| ... .....
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~i~f~ 330 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--SFSFP 330 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--EEEec
Confidence 456889999999998765 344333333345689999999999999999888764321 111222222 111 00000
Q ss_pred cCC-CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 155 SSG-VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 155 ~~~-~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
.+. ..|.+.|. .......-..++++|+|||+.+.+..+...+ -.+.. .+.++|++|.|-.
T Consensus 331 nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 331 DGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred CCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 111 24555531 1122344568999999999987665433333 22222 3788999998854
No 248
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.79 E-value=0.022 Score=48.97 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=24.8
Q ss_pred CceEEEEeCCchhhccCcHH-HHHHHHHhCCC-CceEEEEeecC
Q 015158 181 NIRIFVLDEADEMLSRGFKD-QIYDIFQLLPP-KIQVGVFSATM 222 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~-~~~~i~~~~~~-~~~~i~~SAT~ 222 (412)
..+++|+||++......+.. .+..++..... ..+.+..|--.
T Consensus 162 ~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 67899999999765443333 44556554332 44455554443
No 249
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.79 E-value=0.0045 Score=53.29 Aligned_cols=42 Identities=10% Similarity=0.259 Sum_probs=24.6
Q ss_pred ceEEEEeCCchhhcc-CcHHHHHHHHHhCCC-CceEEEEeecCC
Q 015158 182 IRIFVLDEADEMLSR-GFKDQIYDIFQLLPP-KIQVGVFSATMP 223 (412)
Q Consensus 182 ~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~-~~~~i~~SAT~~ 223 (412)
.+++++||+|.+... .+...+..++..+.. +...+.+|++.+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~ 141 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRP 141 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCC
Confidence 478999999987532 244556666655433 222344455543
No 250
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.79 E-value=0.0056 Score=65.52 Aligned_cols=123 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (412)
+++-|.+++. ..+++++|.|+.|||||.+..--++..+..+....++++++=|++-+.++.+++.+..... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~---- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA-LQ---- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh----
Confidence 5788999997 4688999999999999999877777766555444579999999999988888877643211 00
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCc--eEEEEeCCch
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNI--RIFVLDEADE 192 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~--~~iiiDE~h~ 192 (412)
..............-...-|+|.+.|...+.+.....-++ .+=|.||...
T Consensus 75 -~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0001111222233334678999999865554332211111 2345777664
No 251
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.025 Score=52.62 Aligned_cols=131 Identities=18% Similarity=0.121 Sum_probs=64.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
+..+.+.||+|+|||.+....+...........-.++.+++--.. ..+++..++...++.+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v-------------- 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSI-------------- 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecC--------------
Confidence 566889999999999776433332221111122344445442221 2333444444445444221
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
-++..+...+.. +.+.+.+++|.+-+.-. ......+..+.....+...+++++||........+...
T Consensus 255 -------~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~ 322 (420)
T PRK14721 255 -------KDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISA 322 (420)
T ss_pred -------CCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHH
Confidence 122222222221 24668899998643211 11223344433323344567899999876544444333
No 252
>PRK08116 hypothetical protein; Validated
Probab=96.75 E-value=0.055 Score=47.52 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=24.8
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQ 121 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 121 (412)
..+++.|++|+|||..+. ++++.+... +..++++ +...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~-~~~~ll~ 155 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFV-NFPQLLN 155 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEE-EHHHHHH
Confidence 358999999999997654 444444432 2345554 3344443
No 253
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.74 E-value=0.056 Score=47.26 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=67.9
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC-C--HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP-T--RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~--~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
..+.+.+++|+|||..+...+...... +.++.++.. + .....||.. +....++++..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~~------------- 135 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVIA------------- 135 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHH----HhhhcCceEEe-------------
Confidence 578899999999998765443332221 234444443 2 244455443 32222333211
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCCh-HHHHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPP-EALEITR 231 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~ 231 (412)
..+++.+...+..-. ...++++|++|-+=+.. +......+..+.....+...++.+|||... +....+.
T Consensus 136 --------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~ 206 (270)
T PRK06731 136 --------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 206 (270)
T ss_pred --------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHH
Confidence 123444433332111 11357999999886543 222344555555555555568889999765 4444444
Q ss_pred Hh
Q 015158 232 KF 233 (412)
Q Consensus 232 ~~ 233 (412)
.+
T Consensus 207 ~f 208 (270)
T PRK06731 207 NF 208 (270)
T ss_pred Hh
Confidence 44
No 254
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.73 E-value=0.0074 Score=59.49 Aligned_cols=39 Identities=10% Similarity=0.371 Sum_probs=25.8
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+.... ...+.+.++.-+.+..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEE
Confidence 357899999999886554 344555666655566555544
No 255
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.73 E-value=0.0062 Score=49.04 Aligned_cols=42 Identities=12% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
..++++|+||+|.+.... ...+.+.++.-+.+..++++|..+
T Consensus 101 ~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECCh
Confidence 468899999999876553 677888888888788777776655
No 256
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.73 E-value=0.0067 Score=61.57 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
..|++-|++|+.+. ...++|.|+.|||||.+...-+...+.. +....++|.++-|+.-+.++.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999999764 4579999999999999887777766653 33445799999999989999988887653
No 257
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0039 Score=56.10 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.4
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.+.|+++|+|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 478999999999998763
No 258
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.70 E-value=0.056 Score=48.87 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=26.6
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
+.++++.|+||+|||..+.. ++..+... +..++++. ...+..+.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~--g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR--GKSVIYRT-ADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC--CCeEEEEE-HHHHHHHH
Confidence 47899999999999976543 33333321 23565544 34444433
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.69 E-value=0.011 Score=51.37 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=30.6
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKV 126 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 126 (412)
++.++++.||+|+|||..+.......+.. +.++ +.+++..++.++...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~---g~sv-~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA---GISV-LFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc---CCeE-EEEEHHHHHHHHHHH
Confidence 46799999999999997764434333322 2344 445666776655543
No 260
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.66 E-value=0.012 Score=50.54 Aligned_cols=42 Identities=7% Similarity=0.254 Sum_probs=25.6
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCce-EEEEeecCC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ-VGVFSATMP 223 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~-~i~~SAT~~ 223 (412)
+.+++|+||+|.+... ....+..++........ +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4578999999986543 34455555554433333 466666654
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.63 E-value=0.013 Score=54.96 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=67.6
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
..+++++++|+|||.++.-.+. .+.. .+.++++++...- -....+++..++...++.+.......
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~--~g~kV~lV~~D~~-R~aa~eQL~~la~~~gvp~~~~~~~~----------- 160 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKK--KGLKVGLVAADTY-RPAAYDQLKQLAEKIGVPFYGDPDNK----------- 160 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHH--cCCeEEEecCCCC-CHHHHHHHHHHHHHcCCcEEecCCcc-----------
Confidence 4578899999999987654443 3322 2235555543211 01123334444333344332111000
Q ss_pred CCcEEEeCh-HHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 157 GVHVVVGTP-GRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 157 ~~~iii~T~-~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
.+ +.+...+... ...++||+|.+-+.. +...-..+..+.....+...++.++|+...+.......+
T Consensus 161 -------d~~~i~~~al~~~----~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F 228 (437)
T PRK00771 161 -------DAVEIAKEGLEKF----KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAF 228 (437)
T ss_pred -------CHHHHHHHHHHHh----hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHH
Confidence 11 1122222221 123899999995432 223445566666666667778889998876655555543
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.63 E-value=0.0081 Score=49.73 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=33.2
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
++|.+|+|+|||..++..+...+..+ .+++|++.. .-.++..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECC-CCHHHHHHHHHHc
Confidence 68999999999987766666555433 478888654 4455566666554
No 263
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.62 E-value=0.023 Score=53.77 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=25.3
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
+.+++.||+|+|||..+. ++.+.+....++.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 468999999999997653 44444443334456777754
No 264
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.60 E-value=0.053 Score=54.12 Aligned_cols=126 Identities=18% Similarity=0.132 Sum_probs=66.4
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
++-+.+++|||+|||++....+...... ....++.++.--..- .-..++++.+....++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~R-igA~eQL~~~a~~~gvpv----------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFR-IGALEQLRIYGRILGVPV----------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccc-hHHHHHHHHHHHhCCCCc-----------------
Confidence 3456889999999997765444332211 112245444432111 001334444443334322
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
.++.+++.+...+.. ..+.++|+||=+=+.-. ......+..+.....+...++.++||...+...
T Consensus 246 ----~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 ----HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred ----cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 122356666555553 23568999998775332 223344444444445566789999998654433
No 265
>PLN03025 replication factor C subunit; Provisional
Probab=96.60 E-value=0.025 Score=51.23 Aligned_cols=40 Identities=20% Similarity=0.379 Sum_probs=26.1
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
..+++|+||+|.+.... ...+.+.+...+....++ ++++.
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCC
Confidence 57899999999876443 556666666555555544 44443
No 266
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.59 E-value=0.011 Score=51.96 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.6
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999998763
No 267
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.59 E-value=0.017 Score=51.87 Aligned_cols=144 Identities=13% Similarity=0.053 Sum_probs=73.1
Q ss_pred CCChHHHHhhhhhhhc----C---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 60 EKPSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
+.++|||..++..+.. + .-.++.+|.|.||+..+...+. .+....... ++. ...+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~-~LlC~~~~~-----~~~-------c~~c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAE-HVLASGPDP-----AAA-------QRTRQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH-HHhCCCCCC-----CCc-------chHHHHHhc
Confidence 4689999999988774 3 2478999999999987654333 333221111 110 011111111
Q ss_pred ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCC
Q 015158 133 YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPK 212 (412)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~ 212 (412)
...-.+..+......... .....|.|-....+...+..... ....+++||||+|.+.... ...+.++++.-+.+
T Consensus 70 g~HPD~~~i~~~p~~~~~----k~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~ 143 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTGD----KLRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRAA-CNALLKTLEEPSPG 143 (319)
T ss_pred CCCCCEEEEecCCCcccc----cccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCC
Confidence 111112222100000000 00112333333333333322222 2457899999999875543 56666777777777
Q ss_pred ceEEEEeecC
Q 015158 213 IQVGVFSATM 222 (412)
Q Consensus 213 ~~~i~~SAT~ 222 (412)
..+|++|..+
T Consensus 144 ~~fiL~~~~~ 153 (319)
T PRK08769 144 RYLWLISAQP 153 (319)
T ss_pred CeEEEEECCh
Confidence 7677776554
No 268
>PF13173 AAA_14: AAA domain
Probab=96.57 E-value=0.033 Score=42.84 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.2
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
.-.+|++||+|.+.+ +...+..+.+.. ++.+ +.+|++.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~-ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIK-IILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCce-EEEEccc
Confidence 446899999998754 457777777755 3454 4445544
No 269
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.027 Score=51.21 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc-CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA-PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
++.+++.+|+|+|||.+..-.+......+ .++.+++ .+--.+ ..++|+.+....++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDtyR~g--AveQLk~yae~lgvpv~--------------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTFRSG--AVEQFQGYADKLDVELI--------------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCccCcc--HHHHHHHHhhcCCCCEE---------------
Confidence 45678999999999977655444332322 3455444 322110 12233344333343321
Q ss_pred cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 155 SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 155 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
+..+|+.+...+.... ...+.++|++|=+-+.- +......+..+.....+...++.+||+...
T Consensus 266 ------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~ 329 (407)
T PRK12726 266 ------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKS 329 (407)
T ss_pred ------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccH
Confidence 1234555544443211 11357899999876532 222334455555555555556777887654
No 270
>PRK09183 transposase/IS protein; Provisional
Probab=96.56 E-value=0.022 Score=49.82 Aligned_cols=39 Identities=13% Similarity=0.082 Sum_probs=25.3
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+..+.++++.||+|+|||..+.......... +.+++++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~ 137 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTT 137 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 5567899999999999997664433332222 23566553
No 271
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.53 E-value=0.021 Score=61.46 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=43.9
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhH--HHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFC--SGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
.|++-|++|+..++.. +.++|.+..|+|||.+.- +.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHH
Confidence 4899999999999854 778999999999997642 222222211 1335788899987755544
No 272
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.52 E-value=0.023 Score=52.88 Aligned_cols=33 Identities=21% Similarity=0.229 Sum_probs=27.3
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhH
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
+.......+..+..++++++.+|+|+|||..+-
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455666777778889999999999999997764
No 273
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.52 E-value=0.029 Score=51.33 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=25.7
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
...++||+||+|.+... ....+..++...+....+|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 34579999999986543 24456666666666666555443
No 274
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.063 Score=49.68 Aligned_cols=125 Identities=16% Similarity=0.150 Sum_probs=63.7
Q ss_pred ccEEEECCCCCCchhHhHHHHHHh-hccCCCceeEEEEc-CC-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQ-LDYGLVECQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~-~~~~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
..+++.+|+|+|||.++.-.+... ...+ .++.++. .+ +..+. .++..++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G---~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~------------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMG---KSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP------------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcC---CeEEEecccchhhhHH---HHHHHHHHhcCCCeee-------------
Confidence 347789999999998776555433 2222 2444433 33 22222 2333433333432211
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCC---CCceEEEEeecCChHHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLP---PKIQVGVFSATMPPEALEI 229 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~ 229 (412)
+.....+...+. ..+.++|++|=+-+.. +......+..+..... +...++.+|||...+....
T Consensus 285 --------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~ 351 (432)
T PRK12724 285 --------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLT 351 (432)
T ss_pred --------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHH
Confidence 011223333332 1467899999765432 2223344555554432 3356899999998744444
Q ss_pred HHHh
Q 015158 230 TRKF 233 (412)
Q Consensus 230 ~~~~ 233 (412)
....
T Consensus 352 ~~~~ 355 (432)
T PRK12724 352 VLKA 355 (432)
T ss_pred HHHH
Confidence 4433
No 275
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.49 E-value=0.0098 Score=52.81 Aligned_cols=50 Identities=16% Similarity=0.121 Sum_probs=28.4
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.+.++|+|+|+|||..+=+.+-.. ....-+.+=+..+.+-+.+..+.+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~ts---k~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTS---KKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhc---CCCceEEEEEeccccchHHHHHHHHH
Confidence 478999999999997653222211 11122455555665555555444443
No 276
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.48 E-value=0.015 Score=58.98 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=28.8
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+.... ...+.++++..+.++.+|+++
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999876554 456667777777777667665
No 277
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.02 Score=54.34 Aligned_cols=39 Identities=8% Similarity=0.322 Sum_probs=25.8
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+.... ...+.+.+..-++...+|+.|
T Consensus 115 ~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999876554 344555556555565555544
No 278
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.015 Score=56.56 Aligned_cols=41 Identities=10% Similarity=0.379 Sum_probs=27.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
..++++||||+|.+....+ ..+.+.++.-+.++.+|+.|--
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 4678999999998865543 3444555555556666665543
No 279
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.45 E-value=0.011 Score=55.55 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=74.3
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH-HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE-LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
-.++.++.|||||.+....++..+....++.+++++-++.. +..-+...+.......++....-....+. .......
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i~~~~~ 80 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EIKILNT 80 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EEEecCC
Confidence 35789999999998877666655554323467888888876 55556666665544444432221111100 0000111
Q ss_pred CCcEEEeCh-HHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC--CCceEEEEeecCCh
Q 015158 157 GVHVVVGTP-GRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP--PKIQVGVFSATMPP 224 (412)
Q Consensus 157 ~~~iii~T~-~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~ 224 (412)
+..|++..- +..... . ....++++.+|||..+... .+..+...++ .....+.+|.+|..
T Consensus 81 g~~i~f~g~~d~~~~i-k----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKL-K----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhHh-h----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 335666553 222111 1 1234689999999987543 3333333332 22225889999865
No 280
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.011 Score=59.60 Aligned_cols=38 Identities=8% Similarity=0.281 Sum_probs=25.5
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
..+.++||||+|.+.... ...+.+.+..-+.+.++|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 357899999999875443 45555666665556655554
No 281
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.44 E-value=0.0086 Score=54.13 Aligned_cols=37 Identities=16% Similarity=-0.047 Sum_probs=29.0
Q ss_pred ChHHHHhhhhhhhcCc----cEEEECCCCCCchhHhHHHHH
Q 015158 62 PSAIQQRGIVPFCKGL----DVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~----~~lv~~~tGsGKT~~~~~~~~ 98 (412)
++|||...+..+...+ ..++.||.|.|||..+...+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 5899999999988653 468899999999977654333
No 282
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.43 E-value=0.021 Score=53.59 Aligned_cols=19 Identities=42% Similarity=0.552 Sum_probs=16.0
Q ss_pred ccEEEECCCCCCchhHhHH
Q 015158 77 LDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~ 95 (412)
.+++|.||+|+|||.+.-.
T Consensus 56 ~~~lI~G~~GtGKT~l~~~ 74 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKK 74 (394)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5789999999999987543
No 283
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.41 E-value=0.089 Score=49.07 Aligned_cols=131 Identities=11% Similarity=0.137 Sum_probs=67.2
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC-C-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP-T-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
-+++++++|+|||+++.-.+...... +.++++++. + +.-+ .++++.+....++++...........
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~---G~kV~lV~~D~~R~aA---~eQLk~~a~~~~vp~~~~~~~~dp~~------ 169 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRK---GFKPCLVCADTFRAGA---FDQLKQNATKARIPFYGSYTESDPVK------ 169 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCCEEEEcCcccchhH---HHHHHHHhhccCCeEEeecCCCCHHH------
Confidence 46789999999997765433322222 336666553 2 2222 23334444334555433222111100
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
...+.+... ....+++||+|=+-+.-. ......+..+.....+...++.++||...+.......+
T Consensus 170 -----------i~~~~l~~~--~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 170 -----------IASEGVEKF--KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred -----------HHHHHHHHH--HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 000111110 113578899998765332 22445666666666666778888998875544444443
No 284
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.40 E-value=0.056 Score=52.68 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=42.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.++.+-.++.+|-|.|||.+.-+.+...+.. .+.+++|.+|...-+++.++.+.....
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 3344567889999999997765554433321 235899999999989888888777654
No 285
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.40 E-value=0.024 Score=55.04 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=57.3
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+.++|.|++|+|||..+. ++.+.+.....+.+++++.. ..+..+....+.. +
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~el~~al~~-----~--------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNEFINSIRD-----G--------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHh-----c---------------------
Confidence 348999999999996543 34444433223446666553 4444433322211 0
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhCCC-CceEEEEeecCCh
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLLPP-KIQVGVFSATMPP 224 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~~~-~~~~i~~SAT~~~ 224 (412)
..+.|.+.+ .++++|||||+|.+.... ....+..+++.+.. +.++|+.|-.++.
T Consensus 367 -------~~~~f~~~y-------~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 367 -------KGDSFRRRY-------REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred -------cHHHHHHHh-------hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 011222221 357899999999876533 34556666665544 4555554444433
No 286
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.35 E-value=0.027 Score=49.82 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=34.0
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
-+..|..+++.+++|+|||..+...+...... .+.+++|+.--. -..+..+.+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~E~-~~~~~~~r~~~ 80 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISLEE-PVVRTARRLLG 80 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEccc-CHHHHHHHHHH
Confidence 34456788999999999997766555544333 134788876432 23444444433
No 287
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.35 E-value=0.033 Score=52.70 Aligned_cols=36 Identities=17% Similarity=0.176 Sum_probs=23.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
+.+++.||+|+|||..+. ++...+... +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc--CCCEEEeeH
Confidence 458999999999996653 444444321 346776653
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.35 E-value=0.017 Score=57.13 Aligned_cols=135 Identities=14% Similarity=0.083 Sum_probs=73.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
.+-+++.+|.|+|||+....+.. ... .+..+.++.=.. -..+-.+.++.+....+-.+....+... + ..
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~-~~~---~~~~v~Wlslde-~dndp~rF~~yLi~al~~~~p~~~~~a~-----~-l~ 105 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE-LAA---DGAAVAWLSLDE-SDNDPARFLSYLIAALQQATPTLGDEAQ-----T-LL 105 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH-hcC---cccceeEeecCC-ccCCHHHHHHHHHHHHHHhCccccHHHH-----H-HH
Confidence 45678999999999987655543 222 234566665321 1222233333222211111111111111 1 11
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
.+ +..+ .-+.+...+...--.....-++|+|+.|.+.+......+..+++..|++...++.|-+-+
T Consensus 106 q~-~~~~-~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 106 QK-HQYV-SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred Hh-cccc-cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 11 1111 112222222221111123358999999999999888999999999999999999998865
No 289
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.34 E-value=0.044 Score=43.55 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=70.8
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH---HHHHHHHHHHHhhcccCcEEEEEEcCcc-----hHHH
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE---LAQQIEKVMRALGDYLGVKVHACVGGTS-----VRED 150 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~---L~~q~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 150 (412)
+.|-.++|.|||.+++..++.....+. +++++-=.+. -.+ ...++++ .++.......+.. ....
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~---~v~~vQFlKg~~~~gE--~~~l~~l---~~v~~~~~g~~~~~~~~~~~~~ 76 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGY---RVGVVQFLKGGWKYGE--LKALERL---PNIEIHRMGRGFFWTTENDEED 76 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEEeCCCCccCH--HHHHHhC---CCcEEEECCCCCccCCCChHHH
Confidence 566788899999999887877776654 6766332221 111 1223333 1333332211110 0000
Q ss_pred HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 151 QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 151 ~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
.... -+.+ .... .......++++|+||+-.....++ ...+..+++..|....+|+.+-.+++.+.+
T Consensus 77 ~~~a----------~~~~-~~a~-~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 77 IAAA----------AEGW-AFAK-EAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred HHHH----------HHHH-HHHH-HHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000 0111 1111 112235789999999998766653 456777888888787777777777665544
No 290
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.33 E-value=0.061 Score=54.09 Aligned_cols=27 Identities=22% Similarity=0.687 Sum_probs=18.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHH
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQ 207 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~ 207 (412)
....+||+||+|.+.... ...+..++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR 894 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFD 894 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHH
Confidence 456789999999987542 344554444
No 291
>PTZ00293 thymidine kinase; Provisional
Probab=96.33 E-value=0.024 Score=47.22 Aligned_cols=40 Identities=13% Similarity=0.069 Sum_probs=29.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
|.--++.+|++||||.-.+..+......+ .+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag---~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSE---KKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcC---CceEEEEeccc
Confidence 44568899999999987776666554443 47888888643
No 292
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.31 E-value=0.037 Score=60.36 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=72.6
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhc--cCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLD--YGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.+++-|++|+..++.+ +-.+|.+..|+|||.+. -.+...+. ....+.+++.++||-.-+..+. +. |+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~----Gi 1037 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SA----GV 1037 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hc----Cc
Confidence 4899999999999875 57889999999999764 22322221 1122346888999977555433 21 32
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHH----HcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCC-
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML----RRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPP- 211 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~----~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~- 211 (412)
.. .|..+|+... ..........++|||||+-.+... .+..++...+.
T Consensus 1038 ~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~----~m~~Ll~~~~~~ 1089 (1747)
T PRK13709 1038 DA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNT----DMARAYALIAAG 1089 (1747)
T ss_pred ch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEccccccHH----HHHHHHHhhhcC
Confidence 21 1222221110 000111123479999999976443 34455555543
Q ss_pred CceEEEEeec
Q 015158 212 KIQVGVFSAT 221 (412)
Q Consensus 212 ~~~~i~~SAT 221 (412)
+.++|++.-+
T Consensus 1090 garvVLVGD~ 1099 (1747)
T PRK13709 1090 GGRAVSSGDT 1099 (1747)
T ss_pred CCEEEEecch
Confidence 6777777766
No 293
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.02 Score=55.06 Aligned_cols=39 Identities=8% Similarity=0.306 Sum_probs=27.6
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++|+||+|.+.... ...+.+.+...++.+.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 467899999999876554 345556666666677666655
No 294
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.25 E-value=0.0071 Score=58.87 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=76.1
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH-HHHHHhhcccCcE
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE-KVMRALGDYLGVK 137 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~-~~~~~~~~~~~~~ 137 (412)
..+|||.+.+..+... +.+.+..++-+|||.+.+.++...+... + ..++++.||..++.++. +.+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-P-GPMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-C-CCEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 4789999999988876 5788999999999997766666555443 3 46999999999998876 4454443222110
Q ss_pred EEEEEc---C-cchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 138 VHACVG---G-TSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 138 ~~~~~~---~-~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
-..+.. . .......+.+. +..+.++...+- ..+....++++++||++.+.
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCchhheecC-CCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 011111 0 00011112222 234554442221 12334568899999999874
No 295
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.22 E-value=0.0082 Score=51.96 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC
Q 015158 30 FFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV 106 (412)
Q Consensus 30 ~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~ 106 (412)
.++.......+|+++++++-+.+.+.. ...-++|.+|||||||.+. .++.+.++....
T Consensus 97 vlR~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTTl-AamId~iN~~~~ 154 (353)
T COG2805 97 VLRLIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTTL-AAMIDYINKHKA 154 (353)
T ss_pred EEeccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHHH-HHHHHHHhccCC
Confidence 344444555566666666655553321 1234788999999999774 677777776543
No 296
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.19 E-value=0.069 Score=48.92 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=29.8
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHh-CCCCceEEEEeecCChHH
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQL-LPPKIQVGVFSATMPPEA 226 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 226 (412)
...++++||.|. .+-+-...+.+++.. +..+..+|..|-++|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 457999999994 444434555555544 345777888888887553
No 297
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.023 Score=55.41 Aligned_cols=39 Identities=8% Similarity=0.294 Sum_probs=26.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 357899999999876554 445566666656566555544
No 298
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.14 E-value=0.13 Score=45.34 Aligned_cols=131 Identities=24% Similarity=0.311 Sum_probs=66.9
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc-CC-HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA-PT-RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P~-~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
+-+++.+++|+|||.+..-.+...... +.+++++. .+ +.-+ .+++..+....++.+. ......
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a---~~ql~~~~~~~~i~~~--~~~~~~------- 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAA---IEQLEEWAKRLGVDVI--KQKEGA------- 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHH---HHHHHHHHHhCCeEEE--eCCCCC-------
Confidence 456778999999998765444433222 34666655 32 2222 2233333333343332 211110
Q ss_pred cCCCcEEEeChHH-HHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCC------CCceEEEEeecCChHH
Q 015158 155 SSGVHVVVGTPGR-VFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLP------PKIQVGVFSATMPPEA 226 (412)
Q Consensus 155 ~~~~~iii~T~~~-l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~~ 226 (412)
.|.. ....+.. ....++++|++|=+-+.. +......+..+....+ +...++.++||...+.
T Consensus 138 ---------dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 138 ---------DPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred ---------CHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 0111 1111111 012467999999876543 2223345666655554 5667899999976654
Q ss_pred HHHHHHh
Q 015158 227 LEITRKF 233 (412)
Q Consensus 227 ~~~~~~~ 233 (412)
......+
T Consensus 207 ~~~~~~f 213 (272)
T TIGR00064 207 LEQAKVF 213 (272)
T ss_pred HHHHHHH
Confidence 4444444
No 299
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.026 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=17.4
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhc
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLD 102 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~ 102 (412)
..++.||+|+|||.++.. ++..+.
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHh
Confidence 349999999999988754 333443
No 300
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.13 E-value=0.078 Score=45.45 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=34.0
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
-.+..+++.+++|+|||..++..+...+..+ .++++++... -..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~-~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQL-TTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCC-CHHHHHHHHHHh
Confidence 3467789999999999987655555443333 4788888543 334455555443
No 301
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.13 E-value=0.041 Score=50.05 Aligned_cols=40 Identities=13% Similarity=0.322 Sum_probs=28.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
..+.+||+|||+.+... ....+.+.+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 56789999999987654 35666667666666665555554
No 302
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.12 E-value=0.026 Score=55.51 Aligned_cols=38 Identities=8% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
..+.++||||+|.+.... ...+.+.+..-+.+..+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999876554 44555566665556655555
No 303
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.09 E-value=0.065 Score=53.05 Aligned_cols=157 Identities=18% Similarity=0.238 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCc--cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
.++.....+.....++....|.+.+..+++.+ -+++.|+-|=|||.+.=+++....... ...+++|.+|+.+-++..
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTL 277 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHH
Confidence 33334444555555566666777777777653 578899999999966543332222211 135899999999988888
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHH
Q 015158 124 EKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
++.+.+-....|.+......... .......+...|-+.+|.... ..-+++|+|||=-+ -...+.
T Consensus 278 f~fa~~~l~~lg~~~~v~~d~~g--~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL~ 341 (758)
T COG1444 278 FEFAGKGLEFLGYKRKVAPDALG--EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLLH 341 (758)
T ss_pred HHHHHHhHHHhCCcccccccccc--ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHHH
Confidence 87766644444443222111100 000011122235555555432 11579999999754 234555
Q ss_pred HHHHhCCCCceEEEEeecCC
Q 015158 204 DIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 204 ~i~~~~~~~~~~i~~SAT~~ 223 (412)
++....+ .+++|.|..
T Consensus 342 ~l~~~~~----rv~~sTTIh 357 (758)
T COG1444 342 KLLRRFP----RVLFSTTIH 357 (758)
T ss_pred HHHhhcC----ceEEEeeec
Confidence 6655443 788999975
No 304
>CHL00181 cbbX CbbX; Provisional
Probab=96.08 E-value=0.043 Score=48.73 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=16.9
Q ss_pred CccEEEECCCCCCchhHhHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~ 96 (412)
+.++++.||+|+|||..+-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999877443
No 305
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.07 E-value=0.22 Score=40.51 Aligned_cols=54 Identities=17% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 180 DNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
.+.+++|+|...... +......+..+.........++.+++.-..+..+....+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356889999988642 222234444444444455556777776554444444333
No 306
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.05 E-value=0.021 Score=55.97 Aligned_cols=39 Identities=13% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+....+ ..+.+.+..-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4678999999998765543 34445555545555555544
No 307
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.038 Score=51.67 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++|+||+|.+.... ...+.+.+...++...+|+.+
T Consensus 126 ~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred CCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 456899999999876543 234444455444455445444
No 308
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.01 E-value=0.045 Score=44.81 Aligned_cols=141 Identities=17% Similarity=0.219 Sum_probs=73.2
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH-HHHHHHHhhcccCcEEEEEEcCcchHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ-IEKVMRALGDYLGVKVHACVGGTSVREDQRI 153 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (412)
....+.+..++|.|||.+++..++..+..+. +++++-=.+.-... -...++.+ .++..... +......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~---~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~--g~~~~~~--- 89 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK---KVGVVQFIKGAWSTGERNLLEFG---GGVEFHVM--GTGFTWE--- 89 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCCccCHHHHHhcC---CCcEEEEC--CCCCccc---
Confidence 4568899999999999999888888777664 66666533321000 01122222 12322221 1110000
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
.....--............ ..+....+++||+||+-...+.++ ...+..++...|+..-+|+..-.+++.+.+
T Consensus 90 -~~~~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie 164 (191)
T PRK05986 90 -TQDRERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIE 164 (191)
T ss_pred -CCCcHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 0000000001111111111 112235789999999998887774 456677777777776655555555554433
No 309
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.01 E-value=0.019 Score=48.04 Aligned_cols=17 Identities=24% Similarity=0.233 Sum_probs=14.5
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
.+++++||+|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 37899999999999765
No 310
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.027 Score=54.84 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=27.3
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++||||+|.+.... ...+.+.+...+.+..+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 467899999999876554 445566666666666666666
No 311
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.99 E-value=0.033 Score=54.65 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=27.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+.... ...+.+.+...+.+..+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 467899999999876543 445666666666666666555
No 312
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.027 Score=52.04 Aligned_cols=39 Identities=10% Similarity=0.307 Sum_probs=24.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~kviIIDEa~~l~~~a-~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHS-FNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEEEc
Confidence 356899999999876443 233444555555555555544
No 313
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.97 E-value=0.051 Score=51.76 Aligned_cols=19 Identities=32% Similarity=0.198 Sum_probs=15.5
Q ss_pred cEEEECCCCCCchhHhHHH
Q 015158 78 DVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~ 96 (412)
..++.||+|+|||..+-..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999877543
No 314
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.97 E-value=0.055 Score=49.03 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=26.8
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++||+||+|.+........+..++...+.+.++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457999999998733334556677777766677666544
No 315
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.96 E-value=0.026 Score=48.39 Aligned_cols=86 Identities=26% Similarity=0.382 Sum_probs=63.5
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCc-chHHHHHHhc-CCCcEEEeChHHHHHHHHcCCCCCCCce
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT-SVREDQRILS-SGVHVVVGTPGRVFDMLRRQSLRPDNIR 183 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~ 183 (412)
..+.+||||.+.--+.++.+.++.+... +..+.-+.... ..+++...+. ...+|.|+||+++..+++...+.++++.
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 3567999999887888888888887321 22333333333 4444444444 4679999999999999999999999999
Q ss_pred EEEEeCCch
Q 015158 184 IFVLDEADE 192 (412)
Q Consensus 184 ~iiiDE~h~ 192 (412)
+||+|--|.
T Consensus 204 ~ivlD~s~~ 212 (252)
T PF14617_consen 204 RIVLDWSYL 212 (252)
T ss_pred EEEEcCCcc
Confidence 999998774
No 316
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.94 E-value=0.042 Score=52.65 Aligned_cols=20 Identities=20% Similarity=0.076 Sum_probs=16.3
Q ss_pred ccEEEECCCCCCchhHhHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~ 96 (412)
+..++.||.|+|||.++-..
T Consensus 44 ~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999887443
No 317
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.94 E-value=0.1 Score=47.36 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=25.0
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++|++||+|.+.... ...+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999875432 345666666666666655544
No 318
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.93 E-value=0.055 Score=46.87 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=28.4
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
..|.-++|.|++|+|||..++..+....... +.++++++.
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 3467789999999999977665555554431 347888874
No 319
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.91 E-value=0.048 Score=50.55 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=50.4
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
+-..|++|.-..-.|.- .+.+=.|||||...++-+. .+....+..++++.+-|+.|..++.+...+++
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 44567777766666654 6788999999977544333 45555677899999999999998888777664
No 320
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.90 E-value=0.015 Score=52.26 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=40.5
Q ss_pred HHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 53 GIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 53 ~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
.+...|. +.+.|.+.+.. +..++++++.++||||||..+ .+++..+....+..+++++-.+.++
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3434444 35667777775 445689999999999999543 4455443222234577777776654
No 321
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.89 E-value=0.15 Score=41.02 Aligned_cols=137 Identities=15% Similarity=0.255 Sum_probs=63.1
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCC
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGV 158 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (412)
+.|-...|-|||.+++-.++..+.++. +|+++-=.+.-. ..-+...+....++.....-.+...... ....
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~---rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~~g~~f~~~~~----~~~~ 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGM---RVLIVQFLKGGR--YSGELKALKKLPNVEIERFGKGFVWRMN----EEEE 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT-----EEEEESS--SS----HHHHHHGGGT--EEEE--TT----GG----GHHH
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCC---EEEEEEEecCCC--CcCHHHHHHhCCeEEEEEcCCcccccCC----CcHH
Confidence 556778999999999988888877664 788877555411 1222333322223333222111000000 0000
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHH
Q 015158 159 HVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEAL 227 (412)
Q Consensus 159 ~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 227 (412)
+ ....+...+... ..+....+++||+||+-...+.++ ...+..++...|...-+|+..-.+++.+.
T Consensus 77 ~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~ 144 (172)
T PF02572_consen 77 D--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELI 144 (172)
T ss_dssp H--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHH
T ss_pred H--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHH
Confidence 1 111111111111 122345789999999998877764 35667777777767765555555554433
No 322
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.074 Score=51.41 Aligned_cols=39 Identities=8% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 456899999999876543 445566666666666666655
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.88 E-value=0.075 Score=48.98 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=31.0
Q ss_pred CceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCc-eEEEEeecCChHH
Q 015158 181 NIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKI-QVGVFSATMPPEA 226 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~-~~i~~SAT~~~~~ 226 (412)
+.+++++|+++.+... .....+..++..+.... ++++.|..+|.++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l 222 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKEL 222 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhh
Confidence 5789999999987755 34566777776665544 5666665555443
No 324
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.82 E-value=0.035 Score=54.41 Aligned_cols=39 Identities=10% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++||||+|.+.... ...+.+.+...+..+.+|+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred CCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 457899999999876543 345555566666667666655
No 325
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.80 E-value=0.095 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=17.7
Q ss_pred CccEEEECCCCCCchhHhHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
++-+.+.||||+|||++....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45678899999999987755443
No 326
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.79 E-value=0.034 Score=54.66 Aligned_cols=39 Identities=8% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++||||+|.+.... ...+.+.+...+..+.+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 357899999999865433 344555666556666666655
No 327
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.022 Score=50.56 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=42.0
Q ss_pred CCCCChHHHHhhhhhhhcCc-cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 58 GFEKPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
.|..+++.|...+..+...+ ++++++.||||||+.. -++...+.. ..+++.+-.+.+|
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~~---~eRvItiEDtaEL 212 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFIDS---DERVITIEDTAEL 212 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCCC---cccEEEEeehhhh
Confidence 45557888888888877765 9999999999999754 333333332 2388888887666
No 328
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.77 E-value=0.11 Score=46.52 Aligned_cols=48 Identities=13% Similarity=0.040 Sum_probs=27.0
Q ss_pred CCceEEEEeCCchhhccCcH--HHHHHHHHhC-CCCceEEEEeecCChHHH
Q 015158 180 DNIRIFVLDEADEMLSRGFK--DQIYDIFQLL-PPKIQVGVFSATMPPEAL 227 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~--~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 227 (412)
.+.+++|+||...-....+. ..+..++... ....+.++.|--...++.
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~ 266 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELE 266 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 36899999999854322233 2345555433 345556666655544433
No 329
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.77 E-value=0.021 Score=51.26 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=38.0
Q ss_pred ChHHHHhhhhhhh-cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 62 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 62 l~~~Q~~a~~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
+.+.|...+..+. .+.++++.|+||||||... -+++..+....+..+++.+=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 4566776666644 4678999999999999764 4455554332334577776666665
No 330
>PHA00729 NTP-binding motif containing protein
Probab=95.74 E-value=0.13 Score=43.39 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=36.0
Q ss_pred cEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc-CcH----HHHHHHHHhCCCCceEEEEeecCChHHHHHHHH
Q 015158 159 HVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR-GFK----DQIYDIFQLLPPKIQVGVFSATMPPEALEITRK 232 (412)
Q Consensus 159 ~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~----~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 232 (412)
..++.+.+.+...+..........+++|+||+---... .|. .....+...+...+.++.++..-+.+....+..
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 46666666665555432111234578999994322211 111 222234444444455666666544455454443
No 331
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.73 E-value=0.045 Score=49.27 Aligned_cols=138 Identities=8% Similarity=-0.004 Sum_probs=68.2
Q ss_pred ChHHHHhhhhhhhc----C---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 62 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
++|||...+..+.. | .-.++.||.|.||+..+...+...+........ -|.. .+.++.+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~-------C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQ-------CHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC-------CHHHHHHhcCC
Confidence 46777777777653 3 346789999999998765444333322211100 1111 12233332222
Q ss_pred CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 135 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
.-.+..+.... +..|-|-....+.+.+.... .....+++|+|++|.+.... ...+.+.+..-|++..
T Consensus 73 HPD~~~i~p~~-----------~~~I~id~iR~l~~~~~~~~-~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~ 139 (325)
T PRK06871 73 HPDFHILEPID-----------NKDIGVDQVREINEKVSQHA-QQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTY 139 (325)
T ss_pred CCCEEEEcccc-----------CCCCCHHHHHHHHHHHhhcc-ccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeE
Confidence 22222222110 01121222222222222222 22467899999999876554 5666677776666665
Q ss_pred EEEEeecC
Q 015158 215 VGVFSATM 222 (412)
Q Consensus 215 ~i~~SAT~ 222 (412)
++++|..+
T Consensus 140 fiL~t~~~ 147 (325)
T PRK06871 140 FLLQADLS 147 (325)
T ss_pred EEEEECCh
Confidence 55555443
No 332
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.69 E-value=0.031 Score=50.99 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=22.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
+-+|+..+|.+|.|+|||..+ ..+++.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 336899999999999999654 345555544
No 333
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.69 E-value=0.034 Score=50.99 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=22.6
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
.+-.|+.++|.+|+|+|||..+. .+...+..
T Consensus 164 pig~Gq~~~IvG~~g~GKTtL~~-~i~~~I~~ 194 (415)
T TIGR00767 164 PIGKGQRGLIVAPPKAGKTVLLQ-KIAQAITR 194 (415)
T ss_pred EeCCCCEEEEECCCCCChhHHHH-HHHHhhcc
Confidence 35578999999999999997543 35544443
No 334
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.65 E-value=0.15 Score=41.16 Aligned_cols=135 Identities=18% Similarity=0.247 Sum_probs=68.9
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH---HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL---AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L---~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
-+.+..++|.|||.+++..++.....+. +++++-=.+.- .+ ...+..+ ++.+.....+.....
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~---~v~ivQFlKg~~~~GE--~~~l~~~----~~~~~~~g~g~~~~~----- 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGK---KVGVIQFIKGAWPNGE--RAAFEPH----GVEFQVMGTGFTWET----- 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCC---eEEEEEEecCCcccCh--HHHHHhc----CcEEEECCCCCeecC-----
Confidence 4677889999999999888887776654 66665322211 11 1112221 222222211100000
Q ss_pred cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 155 SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 155 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
.+..--............ ..+....+++||+||+-...+.++ ...+..++...|+...+|+..-.+++.+.+
T Consensus 73 -~~~~~~~~~~~~~~~~a~-~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e 146 (173)
T TIGR00708 73 -QNREADTAIAKAAWQHAK-EMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLE 146 (173)
T ss_pred -CCcHHHHHHHHHHHHHHH-HHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 000000000111111111 112235789999999998777663 356667777777777666665556554443
No 335
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.054 Score=52.52 Aligned_cols=39 Identities=8% Similarity=0.298 Sum_probs=26.4
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..++++||||+|.+.... ...+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 457899999999876544 334555555555666666655
No 336
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.64 E-value=0.061 Score=50.70 Aligned_cols=18 Identities=33% Similarity=0.309 Sum_probs=15.3
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.++++.||+|+|||..+-
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 378999999999997764
No 337
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.63 E-value=0.01 Score=45.78 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.5
Q ss_pred EEEECCCCCCchhHhH
Q 015158 79 VIQQAQSGTGKTATFC 94 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~ 94 (412)
+++.||+|+|||..+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5789999999997653
No 338
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.62 E-value=0.15 Score=51.26 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
+.++||.+++++.+.++.+.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|.... -..+.++..+|+.+.
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 468999999999999999999874 67899999999999999999999999999999997332 245667888876653
No 339
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.61 E-value=0.047 Score=50.62 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.5
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.+++|.||+|+|||.+.-
T Consensus 41 ~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 579999999999997653
No 340
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.036 Score=53.78 Aligned_cols=38 Identities=11% Similarity=0.286 Sum_probs=24.4
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..+++|+||+|.+.... ...+.+.+...+....+|++|
T Consensus 119 ~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 46799999999875433 345555556555555555555
No 341
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.57 E-value=0.1 Score=52.48 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=66.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+.++++.+|++.-|.+.++.+++ .+..+..++|+++..+|..++....+|+.+|+|+|. .+...+.++++..||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 346899999999988877777654 468999999999999999999999999999999997 556677888888888
Q ss_pred EccC
Q 015158 352 NYDL 355 (412)
Q Consensus 352 ~~~~ 355 (412)
+.+.
T Consensus 389 IDE~ 392 (681)
T PRK10917 389 IDEQ 392 (681)
T ss_pred Eech
Confidence 6543
No 342
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.06 Score=52.95 Aligned_cols=39 Identities=13% Similarity=0.289 Sum_probs=25.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++||||+|.+.... ...+.+.+...+....+|+++
T Consensus 126 ~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 457899999999876543 344555555555555555555
No 343
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.56 E-value=0.057 Score=48.22 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=36.6
Q ss_pred hHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 63 SAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 63 ~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
.+.|...+.. +..++++++.++||||||..+ .+++..+....+..+++.+-...++
T Consensus 118 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 118 TAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhh
Confidence 3445555555 444679999999999999765 4455555432234578777776665
No 344
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.56 E-value=0.04 Score=48.58 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=22.9
Q ss_pred ChHHHHhhhhhhh----cC-ccEEEECCCCCCchhHhH
Q 015158 62 PSAIQQRGIVPFC----KG-LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 62 l~~~Q~~a~~~~~----~~-~~~lv~~~tGsGKT~~~~ 94 (412)
+.+.+++++..+. .+ ..+++.||+|+|||+.+-
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555666666553 22 357899999999997764
No 345
>PRK10867 signal recognition particle protein; Provisional
Probab=95.55 E-value=0.28 Score=46.09 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=21.8
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
-+++++++|+|||+++.-.+...... .+.+++++.
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~ 136 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVA 136 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEE
Confidence 46789999999998765544433222 123555544
No 346
>PRK04195 replication factor C large subunit; Provisional
Probab=95.51 E-value=0.11 Score=50.17 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4578999999999997763
No 347
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.05 Score=53.13 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=17.0
Q ss_pred ccEEEECCCCCCchhHhHHHHH
Q 015158 77 LDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
...|+.+|.|+|||.++...+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999988754443
No 348
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.46 E-value=0.072 Score=52.09 Aligned_cols=37 Identities=8% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 217 (412)
....++|+||+|.+.... ...+.+.+...+.+..+|+
T Consensus 118 ~~~kViIIDE~~~Lt~~a-~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGA-FNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHhcCCCCCeEEEE
Confidence 457899999999876543 3344444444444443333
No 349
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.45 E-value=0.092 Score=49.82 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=33.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|.-+++.+++|+|||...+..+...... +.+++|+.-.. -..|.......+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ee-s~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEE-SASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccc-cHHHHHHHHHHc
Confidence 4567899999999998766555544322 34788887543 345555555554
No 350
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.45 E-value=0.44 Score=42.99 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=32.4
Q ss_pred CCceEEEEeCCchhhcc-CcHHHHHHHHHhC------CCCceEEEEeecCChHHHHHHHHh
Q 015158 180 DNIRIFVLDEADEMLSR-GFKDQIYDIFQLL------PPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~------~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
+++++||+|=+-+.... .....+..+...+ .+...++.++||...+.......+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 46899999988764322 2234455544322 244568999999766544444443
No 351
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.43 E-value=0.077 Score=53.29 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.4
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.++++.||+|+|||..+-
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999997763
No 352
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.38 E-value=0.039 Score=47.68 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.1
Q ss_pred hhhhcCccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 71 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 71 ~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
-.+..|+.+++.+|.|+|||..+ -.+++.+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l~~ 42 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLL-QSIANAITK 42 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHH-HHHHhcccc
Confidence 34567899999999999999643 445544443
No 353
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.37 E-value=0.066 Score=59.86 Aligned_cols=61 Identities=26% Similarity=0.280 Sum_probs=43.0
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhH---HHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFC---SGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~---~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
.+++.|+.|+..++.+ +-++|.++.|+|||...- -++...... .+.+++.++||..-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHH
Confidence 4899999999998865 556889999999997652 222222221 235788899987655444
No 354
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.35 E-value=0.11 Score=45.70 Aligned_cols=17 Identities=24% Similarity=0.347 Sum_probs=15.1
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
.+.+++|++|-|||...
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 47999999999999865
No 355
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.33 E-value=0.054 Score=51.55 Aligned_cols=82 Identities=26% Similarity=0.161 Sum_probs=52.9
Q ss_pred HHHHHHHHHCCCCCC-------hHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC---CceeEEEEcCCH
Q 015158 48 ENLLRGIYAYGFEKP-------SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VECQALVLAPTR 117 (412)
Q Consensus 48 ~~~~~~l~~~~~~~l-------~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~ 117 (412)
+-+...|+...-..+ .+-|-+++.. -.++-.+|+|..|||||.+++--++..+...+ .++.++++.|++
T Consensus 192 EvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~ 270 (747)
T COG3973 192 EVLQRVLEKNSSAKMRDIVETIQKEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNR 270 (747)
T ss_pred HHHHHHHHhccchhHHHHHHHhhHhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcH
Confidence 344556665443333 3345554422 23456789999999999998776665554322 234599999999
Q ss_pred HHHHHHHHHHHHh
Q 015158 118 ELAQQIEKVMRAL 130 (412)
Q Consensus 118 ~L~~q~~~~~~~~ 130 (412)
.+.+-..+.+=++
T Consensus 271 vFleYis~VLPeL 283 (747)
T COG3973 271 VFLEYISRVLPEL 283 (747)
T ss_pred HHHHHHHHhchhh
Confidence 9887777766555
No 356
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.30 E-value=0.029 Score=45.92 Aligned_cols=47 Identities=21% Similarity=0.270 Sum_probs=27.0
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
.+.+++++++.|++|+|||..+...+...+..+ ..++++ +...|...
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFI-TASDLLDE 89 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEE-EHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEe-ecCceecc
Confidence 344578999999999999987655444444433 356554 43444443
No 357
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.30 E-value=0.11 Score=49.99 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
..+.++|+||+|.+.... ...+.+.+...++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 467899999999876543 445566666666677666655
No 358
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.29 E-value=0.28 Score=42.21 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=34.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|.-+++.+++|+|||..+...+...+.. +.+++|+.-... .++..+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 5678899999999997776666555443 347888776433 34566666555
No 359
>PF05729 NACHT: NACHT domain
Probab=95.29 E-value=0.13 Score=41.32 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=15.9
Q ss_pred cEEEECCCCCCchhHhHHHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~ 98 (412)
-++|.|++|+|||..+...+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~ 22 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQ 22 (166)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 468999999999977644333
No 360
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.27 E-value=0.13 Score=46.81 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=24.8
Q ss_pred Hhhhhhhh---cCccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 67 QRGIVPFC---KGLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 67 ~~a~~~~~---~~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
.+++..+. +|++.+|.+|.|+|||...-. +++.+..
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 34555544 689999999999999977543 4444433
No 361
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.25 E-value=0.074 Score=44.05 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=24.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....+||+||+|.+.... ...+...+...++...+|+++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 456899999999876543 344555555544445444443
No 362
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.24 E-value=0.13 Score=47.34 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=32.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|.-+++.+++|+|||..++..+...... +.+++|+.-... ..|.......+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs-~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEES-PEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcC-HHHHHHHHHHc
Confidence 4667899999999998776555444332 247888876433 34555444444
No 363
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.084 Score=47.40 Aligned_cols=138 Identities=11% Similarity=0.058 Sum_probs=69.7
Q ss_pred ChHHHHhhhhhhhc----C---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 62 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
++|||...+..+.+ + .-.++.||.|.||+..+...+...+... .... -|.. ...+..+....
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~-~~~~---~Cg~-------C~sC~~~~~g~ 72 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN-YQSE---ACGF-------CHSCELMQSGN 72 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC-CCCC---CCCC-------CHHHHHHHcCC
Confidence 67888888777663 3 3578999999999977644333333222 1111 1111 12222222222
Q ss_pred CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 135 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
.-.+..+..... +..|-|-....+...+... ......+++|||+||.+.... ...+.+.++.-|++..
T Consensus 73 HPD~~~i~p~~~----------~~~I~vdqiR~l~~~~~~~-~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~ 140 (319)
T PRK06090 73 HPDLHVIKPEKE----------GKSITVEQIRQCNRLAQES-SQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCL 140 (319)
T ss_pred CCCEEEEecCcC----------CCcCCHHHHHHHHHHHhhC-cccCCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeE
Confidence 222222221100 0112222222222222211 123567899999999876443 5666677776666666
Q ss_pred EEEEeecC
Q 015158 215 VGVFSATM 222 (412)
Q Consensus 215 ~i~~SAT~ 222 (412)
+|++|..+
T Consensus 141 fiL~t~~~ 148 (319)
T PRK06090 141 FLLVTHNQ 148 (319)
T ss_pred EEEEECCh
Confidence 66666554
No 364
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.23 E-value=0.15 Score=49.21 Aligned_cols=77 Identities=14% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
++++|+.+|++.-+.++.+.|++. +..+..+||+++..+|.+.+.+..+|+.+|+|+|...- =..++++..||+.+.
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDEe 102 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDEE 102 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEECC
Confidence 468999999999999999999864 66789999999999999999999999999999997322 134667787876553
No 365
>PRK06620 hypothetical protein; Validated
Probab=95.23 E-value=0.041 Score=46.51 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=23.5
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
..+++++||+|.+. ...+..+++.+......+++|+|-+
T Consensus 85 ~~d~lliDdi~~~~----~~~lf~l~N~~~e~g~~ilits~~~ 123 (214)
T PRK06620 85 KYNAFIIEDIENWQ----EPALLHIFNIINEKQKYLLLTSSDK 123 (214)
T ss_pred cCCEEEEeccccch----HHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 34789999999542 1355566555544444566666543
No 366
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.22 E-value=0.036 Score=57.01 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCc-EEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR-VLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~-vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
...++|+|.........+...+.-.++......+.- +...-+..|++ ++ .++-++..+.|+|+-.+.||+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 447899999988777777777766665554443322 22334444544 54 4566889999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEE
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAIN 380 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~ 380 (412)
-.++..-.|++||+.|.|+.-...+
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V 1319 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFV 1319 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhh
Confidence 9999999999999999998755443
No 367
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.19 E-value=0.079 Score=46.19 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=25.2
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
-++|-||||+||+-.. -.++..-.-......|++|+|.+.-
T Consensus 89 I~~VYGPTG~GKSqLl-RNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLL-RNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEEECCCCCCHHHHH-HHhhhcCcccCCCCceEEECCCCCC
Confidence 3578999999999432 2222221112234479999998754
No 368
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.16 E-value=0.25 Score=46.36 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=16.9
Q ss_pred cEEEECCCCCCchhHhHHHHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGILQ 99 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~ 99 (412)
.+++++++|+|||+++.-.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999886554443
No 369
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.08 Score=48.69 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=28.8
Q ss_pred CCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 179 PDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
.....++||||+|.+.... ...+.+.+...+.+..+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 3567899999999865443 455666666665566666666555
No 370
>PHA00012 I assembly protein
Probab=95.15 E-value=0.43 Score=42.43 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccC
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYG 104 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~ 104 (412)
.++.+-.|+|||+.+...+...+..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcC
Confidence 47899999999998888788777765
No 371
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.11 E-value=0.072 Score=48.28 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=15.3
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+|+++-+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 68999999999999765
No 372
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.064 Score=48.70 Aligned_cols=139 Identities=9% Similarity=-0.017 Sum_probs=70.1
Q ss_pred ChHHHHhhhhhhhc----C---ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 62 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----~---~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
++|||...+..+.+ + .-.++.||.|.||+..+...+...+-....... -|.. ...++.+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~---~Cg~-------C~sC~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK---SCGH-------CRGCQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCC-------CHHHHHHHcCC
Confidence 67888888877663 3 346789999999998765443333222111111 1111 12222322222
Q ss_pred CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce
Q 015158 135 GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ 214 (412)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 214 (412)
.-.+..+..... +..|-|-....+.+.+.... .....+++|||++|.+.... ...+.+.++.-|.+..
T Consensus 73 HPD~~~i~p~~~----------~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~ 140 (334)
T PRK07993 73 HPDYYTLTPEKG----------KSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTW 140 (334)
T ss_pred CCCEEEEecccc----------cccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeE
Confidence 222222322110 01122222222333332222 23467899999999876553 5566666666566665
Q ss_pred EEEEeecC
Q 015158 215 VGVFSATM 222 (412)
Q Consensus 215 ~i~~SAT~ 222 (412)
++++|.-+
T Consensus 141 fiL~t~~~ 148 (334)
T PRK07993 141 FFLACREP 148 (334)
T ss_pred EEEEECCh
Confidence 56655544
No 373
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.23 Score=42.62 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=31.5
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.|..+++.+++|+|||..+...+...+.. +..++++..- ...++..+....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e-~~~~~i~~~~~~ 69 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTE-ESRESIIRQAAQ 69 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEcc-CCHHHHHHHHHH
Confidence 36788999999999997765545444433 3467777642 233444444443
No 374
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.09 E-value=0.064 Score=48.66 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=29.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
...+++|||+||.+.... ...+.+.++.-+++..+|++|..+
T Consensus 131 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECCh
Confidence 467899999999876554 455666666666666666666554
No 375
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.08 E-value=0.058 Score=47.82 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=35.9
Q ss_pred hhhhccccccCCCCHHHHHHHHHC--CCCCChHHHHhhhhhh---h-----------cCccEEEECCCCCCchhHhHHHH
Q 015158 34 YDEVYDTFDAMGLQENLLRGIYAY--GFEKPSAIQQRGIVPF---C-----------KGLDVIQQAQSGTGKTATFCSGI 97 (412)
Q Consensus 34 ~~~~~~~f~~~~l~~~~~~~l~~~--~~~~l~~~Q~~a~~~~---~-----------~~~~~lv~~~tGsGKT~~~~~~~ 97 (412)
....+..+...++++.+.+.+... ........+......+ + .++.+++.+|||+|||.+....+
T Consensus 136 l~~l~~~L~~~gv~~~la~~L~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 136 GAKLLERLLRAGVSPELARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence 344455666677777776666442 1111111222111111 1 23467889999999998765444
Q ss_pred HHh
Q 015158 98 LQQ 100 (412)
Q Consensus 98 ~~~ 100 (412)
...
T Consensus 216 ~~~ 218 (282)
T TIGR03499 216 ARF 218 (282)
T ss_pred HHH
Confidence 433
No 376
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.05 E-value=0.2 Score=40.46 Aligned_cols=138 Identities=20% Similarity=0.344 Sum_probs=70.1
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH---HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE---LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~---L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
-++|.-..|-|||++++-.++..+.++. +++|+-=.+. -.+. ..+..+. .++....+..+...+...
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~---rv~vvQFiKg~~~~GE~--~~~~~~~--~~v~~~~~~~g~tw~~~~--- 99 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGL---RVGVVQFIKGGWKYGEE--AALEKFG--LGVEFHGMGEGFTWETQD--- 99 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCC---EEEEEEEeecCcchhHH--HHHHhhc--cceeEEecCCceeCCCcC---
Confidence 3677888999999999999998887765 6666542221 1111 1122221 112211111111100000
Q ss_pred cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHHHH
Q 015158 155 SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEALEI 229 (412)
Q Consensus 155 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 229 (412)
...++ ............ -+....+++||+||.-..+..++ ...+..++...|....+|+..-..++.+.+.
T Consensus 100 -~~~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ 172 (198)
T COG2109 100 -READI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIEL 172 (198)
T ss_pred -cHHHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHH
Confidence 00022 111111111111 12224689999999998776663 3566677777776776665555555554443
No 377
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.085 Score=53.35 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=59.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCC-----CeeEE-ecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015158 265 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-----HTVSA-THGDMDQNTRDIIMREFRSGSSRVLITTDL 337 (412)
Q Consensus 265 ~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 337 (412)
..-.+..+.-...+++.++.+|+..-+.++++.|.+.. ..+.. +|+.++..+++..+++|.+|..+|+|+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34455555556666899999999999999998887642 33333 999999999999999999999999999874
No 378
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.01 E-value=0.81 Score=45.86 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=51.7
Q ss_pred HCCCCCChHHHHhhhhhhhc----CccEEEECCCCCCchhHhHHHHHHhh---c---------cCC--------------
Q 015158 56 AYGFEKPSAIQQRGIVPFCK----GLDVIQQAQSGTGKTATFCSGILQQL---D---------YGL-------------- 105 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~----~~~~lv~~~tGsGKT~~~~~~~~~~~---~---------~~~-------------- 105 (412)
.++|. ||+.|..-+..++. .+++++..|||+|||++.+-..+... . ...
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 45666 89999987777665 57899999999999987654444322 1 000
Q ss_pred -------------CceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 106 -------------VECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 106 -------------~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
..++++|-.-|-.-..|..+++++.
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 1346777777777788888888774
No 379
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.99 E-value=0.14 Score=46.88 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=28.7
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
..+.++||||+|.+.... ...+.+.+...+.+..++++|..+
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~~ 181 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHSS 181 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECCh
Confidence 467899999999875443 455666666666666666666443
No 380
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.97 E-value=0.71 Score=41.12 Aligned_cols=132 Identities=21% Similarity=0.300 Sum_probs=71.1
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE-cCcchHHHHHHhcC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRILSS 156 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 156 (412)
.+++++-.|+|||++.-=.+......+ .++++.+- ...-.-..++++.|....|..+.... |..+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g---~~VllaA~-DTFRAaAiEQL~~w~er~gv~vI~~~~G~Dp---------- 206 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG---KSVLLAAG-DTFRAAAIEQLEVWGERLGVPVISGKEGADP---------- 206 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC---CeEEEEec-chHHHHHHHHHHHHHHHhCCeEEccCCCCCc----------
Confidence 467899999999988644333333333 35555443 22222233344444444465554321 2221
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc-CcHHHHHHHHHhCCCCc------eEEEEeecCChHHHHH
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR-GFKDQIYDIFQLLPPKI------QVGVFSATMPPEALEI 229 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~i~~~~~~~~------~~i~~SAT~~~~~~~~ 229 (412)
+.|+ +..+.+.. .+++|+|++|=|-++=+. +.-..+.++.+-+.+.. .++.+-||.+.+....
T Consensus 207 -AaVa-------fDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 207 -AAVA-------FDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred -HHHH-------HHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHH
Confidence 1111 12222211 257899999998876533 24466666666665433 4566689988765555
Q ss_pred HHHh
Q 015158 230 TRKF 233 (412)
Q Consensus 230 ~~~~ 233 (412)
.+.+
T Consensus 277 Ak~F 280 (340)
T COG0552 277 AKIF 280 (340)
T ss_pred HHHH
Confidence 5443
No 381
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.97 E-value=0.34 Score=43.34 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=61.7
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+.+.++|+.|.|||..+ ..+........+. -++.-.-+.++.+++..+. |..
T Consensus 66 ~GlYl~GgVGrGKT~LM--D~Fy~~lp~~~k~----R~HFh~FM~~vH~~l~~l~-----------g~~----------- 117 (367)
T COG1485 66 RGLYLWGGVGRGKTMLM--DLFYESLPGERKR----RLHFHRFMARVHQRLHTLQ-----------GQT----------- 117 (367)
T ss_pred ceEEEECCCCccHHHHH--HHHHhhCCccccc----cccHHHHHHHHHHHHHHHc-----------CCC-----------
Confidence 56899999999999543 3333322221111 1344455566666655542 111
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHh-CCCCceEEEEeecCChHHH
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQL-LPPKIQVGVFSATMPPEAL 227 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~ 227 (412)
+.+- .+...+. .+..++++||.| +.+-+-...+.+++.. +..++.++..|-|.|.++.
T Consensus 118 --dpl~----~iA~~~~------~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 118 --DPLP----PIADELA------AETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLY 176 (367)
T ss_pred --CccH----HHHHHHH------hcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhc
Confidence 1110 1111111 356899999999 4554444455555543 4568888999999886543
No 382
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.45 Score=43.79 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=20.1
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLP 210 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~ 210 (412)
..-+||+||++.+..... ..+..+.....
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 455899999999887753 55555555443
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=94.92 E-value=0.072 Score=45.55 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=39.1
Q ss_pred hhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 69 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 69 a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
...-+..|.-++|.|++|+|||..++..+...... +.+++|++--.. .+|..+.+..+
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEeCC-HHHHHHHHHHc
Confidence 33445567788999999999998877666655543 346777764332 45666666665
No 384
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.91 E-value=0.17 Score=46.77 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=14.7
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
+..++.||+|+|||..+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346889999999997663
No 385
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.87 E-value=0.18 Score=45.59 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=69.6
Q ss_pred ChHHHHhhhhhhhcC-----ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 62 PSAIQQRGIVPFCKG-----LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
++|||...+..+... ...++.||.|.|||..+...+. .+....+... -.-|. ....++.+.....-
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~-~llC~~~~~~-~~~Cg-------~C~~C~~~~~~~Hp 72 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ-ALLCETPAPG-HKPCG-------ECMSCHLFGQGSHP 72 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH-HHcCCCCCCC-CCCCC-------cCHHHHHHhcCCCC
Confidence 367888888777632 3578999999999987654433 3332111000 00011 11222333222222
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 216 (412)
.+..+.......... .....|-|-....+...+..... ....+++|+|++|.+... ....+.+.+...+.+..+|
T Consensus 73 D~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p~-~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~I 147 (325)
T PRK08699 73 DFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTSV-RGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFL 147 (325)
T ss_pred CEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCcc-cCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEE
Confidence 333333211000000 00012322222233333322222 245788999999986544 4556666666666566555
Q ss_pred EEeecC
Q 015158 217 VFSATM 222 (412)
Q Consensus 217 ~~SAT~ 222 (412)
++|-.+
T Consensus 148 lvth~~ 153 (325)
T PRK08699 148 LVSHAA 153 (325)
T ss_pred EEeCCh
Confidence 554443
No 386
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.82 E-value=0.16 Score=50.07 Aligned_cols=38 Identities=11% Similarity=0.293 Sum_probs=22.7
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
....+|||||+|.+.... ...+.+.+...+....+|+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred CCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 457899999999875443 33444444444444444443
No 387
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.11 Score=51.30 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=22.7
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
....++||||+|.+.... ...+.+.+..-+....+|+.
T Consensus 120 ~~~KViIIDEad~Lt~~a-~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA-FNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred CCceEEEEECccccCHHH-HHHHHHHHhcCCcCeEEEEE
Confidence 456899999999875433 33444555544444434443
No 388
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.79 E-value=0.12 Score=51.55 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=77.2
Q ss_pred ceEEEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHhcCC
Q 015158 252 IKQFHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGS 328 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g~ 328 (412)
...+...-...+.|.+.+.+++... .++.+||.++.+....++.+.|+.+ |..+.++|+++++.+|...+.+..+|+
T Consensus 217 ~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~ 296 (730)
T COG1198 217 FAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE 296 (730)
T ss_pred ccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC
Confidence 3444455555566777777777664 4468999999999988888888765 778999999999999999999999999
Q ss_pred CcEEEEcCCCcCCCCCCCCCEEEEc
Q 015158 329 SRVLITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 329 ~~vlv~t~~~~~G~d~~~~~~vi~~ 353 (412)
.+|+|+|...- =.-+++.-.+|..
T Consensus 297 ~~vVIGtRSAl-F~Pf~~LGLIIvD 320 (730)
T COG1198 297 ARVVIGTRSAL-FLPFKNLGLIIVD 320 (730)
T ss_pred ceEEEEechhh-cCchhhccEEEEe
Confidence 99999997421 2244566666643
No 389
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=94.77 E-value=0.65 Score=37.59 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=72.1
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH---HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL---AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L---~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
-+.|-...|-|||.+++-.++....++. +++++-=.+.- .+.. .++.+ . ++.......+.....
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~---rV~iiQFlKg~~~~GE~~--~l~~~-~--~v~~~~~g~~~~~~~----- 89 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGT---PVLIVQFLKGGIQQGPDR--PIQLG-Q--NLDWVRCDLPRCLDT----- 89 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCC---EEEEEEEecCCCcchHHH--HHHhC-C--CcEEEECCCCCeeeC-----
Confidence 4667788999999999988888877664 77776533322 1211 12222 1 333322111000000
Q ss_pred cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc--HHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 155 SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF--KDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 155 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
......-....+....... ..+....+++||+||+-...+.++ ...+..+++..|+...+|+..-.+++.+.+
T Consensus 90 ~~~~~~~~~~~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 90 PHLDESEKKALQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred CCcCHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 0000000000111111111 112235789999999998887774 356777777777777666666666655443
No 390
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.75 E-value=0.088 Score=43.99 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 216 (412)
.....||+|||+.+.+. ....+++......+..++.
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhh
Confidence 46689999999986654 3566666666555444443
No 391
>PRK14873 primosome assembly protein PriA; Provisional
Probab=94.70 E-value=0.19 Score=50.01 Aligned_cols=92 Identities=21% Similarity=0.159 Sum_probs=72.1
Q ss_pred hhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCC--CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCC
Q 015158 263 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 338 (412)
Q Consensus 263 ~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~ 338 (412)
+.|.+.+.+++... .++.+||.++.+..+.++.+.|+++. ..+..+|+++++.+|.+.+.+..+|+.+|+|+|...
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 35666666666553 35679999999999999999998764 579999999999999999999999999999999742
Q ss_pred cCCCCCCCCCEEEEccC
Q 015158 339 ARGIDVQQVSLVINYDL 355 (412)
Q Consensus 339 ~~G~d~~~~~~vi~~~~ 355 (412)
- =.-+++...||+.+-
T Consensus 251 v-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 251 V-FAPVEDLGLVAIWDD 266 (665)
T ss_pred E-EeccCCCCEEEEEcC
Confidence 1 234556667765543
No 392
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.65 E-value=0.23 Score=49.67 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=66.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+.++++.+|++.-|.+.++.+++ .+..+..++|+++..+|..+++...+|+.+|+|+|. .+...+++.++..||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 346899999999988887776654 478999999999999999999999999999999998 555677788888888
Q ss_pred EccC
Q 015158 352 NYDL 355 (412)
Q Consensus 352 ~~~~ 355 (412)
+.+.
T Consensus 363 IDEa 366 (630)
T TIGR00643 363 IDEQ 366 (630)
T ss_pred Eech
Confidence 6543
No 393
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.61 E-value=0.045 Score=47.14 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.7
Q ss_pred EEEECCCCCCchhHh
Q 015158 79 VIQQAQSGTGKTATF 93 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~ 93 (412)
++|.|++|+|||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 378999999999754
No 394
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.57 E-value=0.048 Score=51.06 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=29.9
Q ss_pred ChHHHHhhhhhhhcCc--cEEEECCCCCCchhHhHHHHHHhhccC
Q 015158 62 PSAIQQRGIVPFCKGL--DVIQQAQSGTGKTATFCSGILQQLDYG 104 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~ 104 (412)
..+.|...+..+++.. -+++.||||||||.+. .+++..+...
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTL-YAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHH-HHHHHHhcCC
Confidence 3677777787777653 4678999999999874 4555555443
No 395
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.56 E-value=0.069 Score=46.09 Aligned_cols=51 Identities=22% Similarity=0.212 Sum_probs=36.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..++|.+++|+|||..++..+...+..+ .+++|++- ..-..+..+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~g---e~~lyvs~-ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVAL-EEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CcEEEEEe-eCCHHHHHHHHHHh
Confidence 56789999999999987776666655433 47888874 34455666666654
No 396
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.54 E-value=0.12 Score=54.38 Aligned_cols=41 Identities=15% Similarity=0.301 Sum_probs=33.2
Q ss_pred eEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 183 RIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 183 ~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
-+||+|++|.+.+......+..++...+.+..+|+.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 48999999988666556688888888888898888887743
No 397
>PRK06904 replicative DNA helicase; Validated
Probab=94.54 E-value=0.29 Score=46.78 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=58.4
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-Ec-CcchHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VG-GTSVRED 150 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 150 (412)
+..|.-++|.|.||.|||..++-.+.+.... .+..++|++.- .-.+|+..++-.... ++....+ .| ..+...+
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSLE-MPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHHH
Confidence 4445667889999999997664444433222 13467776653 335555555443221 2222222 22 1222222
Q ss_pred HH------HhcCCCcEEE-----eChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 151 QR------ILSSGVHVVV-----GTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 151 ~~------~~~~~~~iii-----~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
.. .+.....+.| .|...+.....+.......+++||||=.|.+.
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11 1222334665 34455543332211112357899999998765
No 398
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.52 E-value=0.1 Score=45.74 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=70.4
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE-cCcchHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRI 153 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (412)
.|.-+++.|.+|.|||..++-.+.+..... +..++|++.--. .+++..++-... .++....+. +..........
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~-~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMS-EEELAARLLARL--SGVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS--HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCC-HHHHHHHHHHHh--hcchhhhhhccccCHHHHHHH
Confidence 355678999999999988777776665542 247888886433 222333322211 122111111 11111111111
Q ss_pred -----hcCCCcEEE-e----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc----CcHHHHHHHHHhCC-----CCce
Q 015158 154 -----LSSGVHVVV-G----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR----GFKDQIYDIFQLLP-----PKIQ 214 (412)
Q Consensus 154 -----~~~~~~iii-~----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~----~~~~~~~~i~~~~~-----~~~~ 214 (412)
......+++ . |.+.+...+.........+++||||=.|.+... +....+..+...+. .++.
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 172 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIP 172 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCe
Confidence 012223443 2 334444444322222257899999999987653 22333333322221 2677
Q ss_pred EEEEeecC
Q 015158 215 VGVFSATM 222 (412)
Q Consensus 215 ~i~~SAT~ 222 (412)
++++|...
T Consensus 173 vi~~sQln 180 (259)
T PF03796_consen 173 VIALSQLN 180 (259)
T ss_dssp EEEEEEBS
T ss_pred EEEccccC
Confidence 77777764
No 399
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.11 Score=49.59 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=51.7
Q ss_pred CceEEEEeCCchhhcc-------CcHHHHHHHHHh---CCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccC
Q 015158 181 NIRIFVLDEADEMLSR-------GFKDQIYDIFQL---LPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLE 250 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~-------~~~~~~~~i~~~---~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (412)
.-.+|++||++.+... ...+.+..++-. +.....+..+-||-.+++.+-.- ..+.
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi---------------LRPG 668 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI---------------LRPG 668 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhh---------------cCCC
Confidence 4578999999987521 122334444333 33455678888887665322111 0111
Q ss_pred Cc-eEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHH
Q 015158 251 GI-KQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298 (412)
Q Consensus 251 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L 298 (412)
-+ +..++.++...++...|..+.+.++ .+ +.+.-..++++...
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn~k-~p----l~~dVdl~eia~~~ 712 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKNTK-PP----LSSDVDLDEIARNT 712 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhccCC-CC----CCcccCHHHHhhcc
Confidence 12 3345556666667777776666522 11 33334455555544
No 400
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.48 E-value=0.37 Score=45.62 Aligned_cols=118 Identities=17% Similarity=0.124 Sum_probs=58.0
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVRED 150 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 150 (412)
-+..|.-++|.|++|+|||..++..+.+.... .+.+++|++.- .-..|+..++-... .++....+ .|......+
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlE-m~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLE-MSAEQLGERLLASK--SGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC-CCHHHHHHHHHHHH--cCCCHHHHhcCCCCHHHH
Confidence 34456678899999999997766555444311 23467777632 23444444433321 12222211 122221111
Q ss_pred H------HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 151 Q------RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 151 ~------~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
. .... +..+.|. |.+.+.....+.......+++||||=.|.+..
T Consensus 265 ~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 265 NRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1 1111 2345553 33444443332211122588999999987653
No 401
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=94.46 E-value=1.1 Score=41.48 Aligned_cols=145 Identities=15% Similarity=0.103 Sum_probs=61.8
Q ss_pred EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH-HHHHHH---HHHHHhhcc-cCcEEEEEEcCcchHHHHHHh
Q 015158 80 IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE-LAQQIE---KVMRALGDY-LGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 80 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (412)
++.++.|+|||.+....++...........++++ ++.. +..... .....+... ............-. +
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------L 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------E
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------e
Confidence 4678999999988777666665544333455555 5554 444322 223333222 12222111111110 1
Q ss_pred cCCCcEEEeChHHH--HHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC--hHHHHHH
Q 015158 155 SSGVHVVVGTPGRV--FDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP--PEALEIT 230 (412)
Q Consensus 155 ~~~~~iii~T~~~l--~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~--~~~~~~~ 230 (412)
.++..|.+.+...= ..-+. -..++++++||+-...+..+...+........... .+..|.|+. .......
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~~ 147 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEIF 147 (384)
T ss_dssp TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHH
T ss_pred cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcc-eEEeecCCCCCCceeeee
Confidence 23445666663321 11111 14678999999887655544444444444333222 224454443 3444455
Q ss_pred HHhcCCC
Q 015158 231 RKFMNKP 237 (412)
Q Consensus 231 ~~~~~~~ 237 (412)
.......
T Consensus 148 ~~~~~~~ 154 (384)
T PF03237_consen 148 QRNLDDD 154 (384)
T ss_dssp HHHHCTS
T ss_pred ehhhcCC
Confidence 5444444
No 402
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.44 E-value=0.064 Score=48.72 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=29.8
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
+..+++++|.||||||||... -+++..+.. ..+++.+-++.++
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCC---CCCEEEECCCccc
Confidence 445789999999999999764 445554443 2467776676654
No 403
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.41 E-value=0.18 Score=46.86 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=25.5
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
.+..++||||+|.+.... ...+.+.+..-+++..+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 467899999999976543 34455555555555544444444
No 404
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.27 Score=48.70 Aligned_cols=39 Identities=10% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 120 ~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred CCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 467899999999876543 445666666655555544444
No 405
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.25 Score=44.72 Aligned_cols=62 Identities=23% Similarity=0.335 Sum_probs=35.9
Q ss_pred CChhhhccccccCCCCHHHHHHHHHCCCC-----------CChH---HHHhhh------hhhhcC-----ccEEEECCCC
Q 015158 32 TSYDEVYDTFDAMGLQENLLRGIYAYGFE-----------KPSA---IQQRGI------VPFCKG-----LDVIQQAQSG 86 (412)
Q Consensus 32 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~-----------~l~~---~Q~~a~------~~~~~~-----~~~lv~~~tG 86 (412)
...+.....|+.++....+...+..--.. .+.. .=++|+ +...+| +.++.++|+|
T Consensus 176 ~~~~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPG 255 (491)
T KOG0738|consen 176 ASLKGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPG 255 (491)
T ss_pred cccccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCC
Confidence 34455667888888887887777532110 1111 111111 122233 6789999999
Q ss_pred CCchhHh
Q 015158 87 TGKTATF 93 (412)
Q Consensus 87 sGKT~~~ 93 (412)
+|||+.+
T Consensus 256 TGKTlLA 262 (491)
T KOG0738|consen 256 TGKTLLA 262 (491)
T ss_pred CcHHHHH
Confidence 9999765
No 406
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.29 E-value=0.058 Score=46.19 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=35.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..++|.+++|+|||..++..+.+.+.+ + .++++++-. .-.+++.+.+..+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS-S-HHHHHHHHHTT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEec-CCHHHHHHHHHHc
Confidence 5678999999999998877777766655 4 378888753 3345566666655
No 407
>PHA00350 putative assembly protein
Probab=94.29 E-value=0.37 Score=44.48 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=19.3
Q ss_pred EEEECCCCCCchhHhHH-HHHHhhccC
Q 015158 79 VIQQAQSGTGKTATFCS-GILQQLDYG 104 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~-~~~~~~~~~ 104 (412)
.++.+..|||||..++- .++..+..+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC
Confidence 47899999999987765 455555554
No 408
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=94.25 E-value=0.1 Score=47.91 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=25.3
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
.+..+++.+|||||||... .+++..+....+..+++.+=.
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiEd 187 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYED 187 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEec
Confidence 3456899999999999765 455555543323345555533
No 409
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=1.1 Score=39.22 Aligned_cols=129 Identities=18% Similarity=0.185 Sum_probs=70.7
Q ss_pred hhhhcCc-----cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCc
Q 015158 71 VPFCKGL-----DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGT 145 (412)
Q Consensus 71 ~~~~~~~-----~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~ 145 (412)
+++..|+ .+++.+|+|+||+..+=..+. . .....+-+.+..|+..|.-+-.++..
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVAT---E----AnSTFFSvSSSDLvSKWmGESEkLVk------------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVAT---E----ANSTFFSVSSSDLVSKWMGESEKLVK------------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHh---h----cCCceEEeehHHHHHHHhccHHHHHH-------------
Confidence 4455553 478999999999955421111 1 12577777778887776654444310
Q ss_pred chHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC---cHHHHHHH----HHhC----CCCce
Q 015158 146 SVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG---FKDQIYDI----FQLL----PPKIQ 214 (412)
Q Consensus 146 ~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~---~~~~~~~i----~~~~----~~~~~ 214 (412)
.|+.+.+. +.-+.|++||++.+.... -....++| +-.+ ..+-.
T Consensus 216 ---------------------nLFemARe-----~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 216 ---------------------NLFEMARE-----NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred ---------------------HHHHHHHh-----cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 12222221 245789999999754221 11222222 2222 23456
Q ss_pred EEEEeecCChH-HHHHHHHhcCCCeEEEecCC
Q 015158 215 VGVFSATMPPE-ALEITRKFMNKPVRILVKRD 245 (412)
Q Consensus 215 ~i~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~ 245 (412)
++.+.||-.+- +...+++-+.+.+++.....
T Consensus 270 vLVLgATNiPw~LDsAIRRRFekRIYIPLPe~ 301 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIRRRFEKRIYIPLPEA 301 (439)
T ss_pred eEEEecCCCchhHHHHHHHHhhcceeccCCcH
Confidence 88888886553 34456666666555554433
No 410
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.14 E-value=0.069 Score=45.50 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=18.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY 103 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~ 103 (412)
..-++++++||||||.+. .++..+-.+
T Consensus 127 RGLviiVGaTGSGKSTtm-AaMi~yRN~ 153 (375)
T COG5008 127 RGLVIIVGATGSGKSTTM-AAMIGYRNK 153 (375)
T ss_pred CceEEEECCCCCCchhhH-HHHhccccc
Confidence 345688999999999775 344444333
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.10 E-value=0.18 Score=49.33 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+.... ...+.+.+...+....+|+.+
T Consensus 118 ~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred CCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEEec
Confidence 467899999999875443 334444444444444444433
No 412
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.04 E-value=0.025 Score=46.18 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=28.2
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCC--CCCceEEEEeCCchhhcc
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLR--PDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~--~~~~~~iiiDE~h~~~~~ 196 (412)
....++|||+++..|+.......+. ...-.+||+||||.+.+.
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHHH
Confidence 3456899999999887654332221 123468999999997643
No 413
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.01 E-value=0.14 Score=51.57 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=55.7
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.|++-|++|+... ...++|.++.|||||.+..--+...+... -....++.++=|+.-+.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4889999999887 55689999999999998877777776653 3334688888888888889888888764
No 414
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.97 E-value=0.09 Score=48.18 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=20.2
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhc
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLD 102 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~ 102 (412)
.+..++|.+|||||||... .+++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567899999999999765 45555553
No 415
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.12 Score=53.04 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=39.9
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCC-hHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKP-SAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l-~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.....|++.+....++..|+++-+..+ ||-+..-+ .+.-.+.++..+|.|+|||+.+
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 445689999988999999988755432 33222222 3444577999999999999775
No 416
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.90 E-value=0.23 Score=51.42 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=65.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+.+++|.+|+..-|.+.++.+++. +..+..++|..+..++.++++.+.+|+.+|+|+|. .+...+.+.++..+|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3468999999999999888877653 56788899999999999999999999999999998 555667888888888
Q ss_pred Ecc
Q 015158 352 NYD 354 (412)
Q Consensus 352 ~~~ 354 (412)
+-+
T Consensus 579 IDE 581 (926)
T TIGR00580 579 IDE 581 (926)
T ss_pred eec
Confidence 544
No 417
>PRK09087 hypothetical protein; Validated
Probab=93.90 E-value=0.24 Score=42.30 Aligned_cols=38 Identities=3% Similarity=0.044 Sum_probs=23.8
Q ss_pred eEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 183 RIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 183 ~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
+++++|++|.+. . ....+..+++.+......+++|++.
T Consensus 89 ~~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG-F-DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC-C-CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 489999999763 2 2456777776665533445555553
No 418
>PRK08506 replicative DNA helicase; Provisional
Probab=93.89 E-value=0.76 Score=44.09 Aligned_cols=115 Identities=22% Similarity=0.167 Sum_probs=59.2
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 151 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (412)
+..|.-+++.|.||.|||..++-.+.+.... +.++++++.- .-..|+..++-.... +++...+ .|..+...+.
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~~~---g~~V~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKALNQ---DKGVAFFSLE-MPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHHhc---CCcEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHH
Confidence 3345667889999999998776666555432 3467777543 335555555433211 2222111 1222222221
Q ss_pred ------HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 152 ------RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 152 ------~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
..+.. ..+.|- |.+.+...+++.......+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 11122 235442 4444444333211112357899999999765
No 419
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.71 E-value=0.087 Score=47.75 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.1
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
..+++++|+|+||||||... -+++..+... .+++.+=.+.++
T Consensus 158 ~~~~nili~G~tgSGKTTll-~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFT-NAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHH-HHHHhhCCCC---CeEEEecCCCcc
Confidence 35789999999999999764 4555555433 366665444443
No 420
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.58 E-value=0.3 Score=41.78 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=28.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTR 117 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 117 (412)
|.-+.|.+++|+|||..++..+......+ .....++++....
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 56788999999999987766555543322 0124678877654
No 421
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=0.28 Score=44.60 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=28.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
...+++||||+|.+.... ...+.+.+..-|.+..+|++|..
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeCC
Confidence 457899999999876543 45666666666666666665443
No 422
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.73 Score=41.49 Aligned_cols=59 Identities=17% Similarity=0.056 Sum_probs=36.4
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCC-hHHHHhhhhhhhcCccEEEECCCCCCchhHhH
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKP-SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l-~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
....+|.+.+--+.+.+.|++.-.-.+ +|-.-.-...+...+.+++.+|+|+|||+++-
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 344577777777777777765433222 22222222223334788999999999998873
No 423
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.43 E-value=0.76 Score=44.17 Aligned_cols=37 Identities=14% Similarity=0.374 Sum_probs=21.8
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEE
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGV 217 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 217 (412)
....++|+||+|.+.... ...+...+...++...+|+
T Consensus 118 ~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred CCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 456899999999875443 2344444444444443333
No 424
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.37 E-value=0.41 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.282 Sum_probs=16.1
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.++.+++.||+|+|||..+
T Consensus 211 ~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCceEEEECCCCCChHHHH
Confidence 4578999999999999664
No 425
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.34 E-value=0.34 Score=51.48 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=63.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+.+++|.+|++.-|.+.++.+++. +..+..+++..+..++.++++...+|+.+|+|+|. .+...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999988888753 45778899999999999999999999999999997 445556777788877
Q ss_pred Ecc
Q 015158 352 NYD 354 (412)
Q Consensus 352 ~~~ 354 (412)
+-+
T Consensus 728 IDE 730 (1147)
T PRK10689 728 VDE 730 (1147)
T ss_pred Eec
Confidence 543
No 426
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.32 E-value=0.068 Score=52.38 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=47.1
Q ss_pred HHHHHhcCCCcEEEEcCCCcCCCCCCCCCEE--------EEccCCCChhhHHHhhhhcccCCC
Q 015158 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPTQPENYLHRIGRSGRFGR 374 (412)
Q Consensus 320 ~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~v--------i~~~~~~s~~~~~Q~~GR~~R~g~ 374 (412)
-.++|..|+..|-|.+.+.+.||.+..-+.| |-+++|||....+|..||..|.++
T Consensus 849 EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 849 EKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 4578999999999999999999998754443 457899999999999999999865
No 427
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.30 E-value=1.7 Score=41.76 Aligned_cols=77 Identities=5% Similarity=0.113 Sum_probs=63.1
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCC-------CCCCCCE
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGI-------DVQQVSL 349 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~-------d~~~~~~ 349 (412)
.+.+||.+|+++-++...+.|+..++.+..+++..+..++..++....+++.+++++|+ .+.... ....+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 46799999999999999999999999999999999999999999999999999999998 222222 3456777
Q ss_pred EEEcc
Q 015158 350 VINYD 354 (412)
Q Consensus 350 vi~~~ 354 (412)
+|+.+
T Consensus 131 iViDE 135 (470)
T TIGR00614 131 IAVDE 135 (470)
T ss_pred EEEeC
Confidence 76544
No 428
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.27 E-value=0.77 Score=43.72 Aligned_cols=39 Identities=10% Similarity=0.309 Sum_probs=24.5
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....+||+||+|.+.... ...+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 356899999999875443 344555555555555555544
No 429
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.11 E-value=1.6 Score=40.40 Aligned_cols=133 Identities=16% Similarity=0.243 Sum_probs=75.7
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 157 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (412)
.++.++=-|||||+++-=.+.. +.. .+.++++++.-.- -.-..++++.++...++.+.....+.. ..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~-lkk--~~~kvllVaaD~~-RpAA~eQL~~La~q~~v~~f~~~~~~~--Pv------- 168 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKY-LKK--KGKKVLLVAADTY-RPAAIEQLKQLAEQVGVPFFGSGTEKD--PV------- 168 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHH-HHH--cCCceEEEecccC-ChHHHHHHHHHHHHcCCceecCCCCCC--HH-------
Confidence 3677899999999876433332 222 3345666553211 111344555555555665544411111 11
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 158 VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 158 ~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
+ |+ .+.+... ....++++|+|=|-++- +...-..+..+...+.++-.++.+-|+...+.......|
T Consensus 169 -~--Ia-----k~al~~a--k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF 235 (451)
T COG0541 169 -E--IA-----KAALEKA--KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAF 235 (451)
T ss_pred -H--HH-----HHHHHHH--HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHH
Confidence 0 11 1222211 12457899999887643 445667888888888888888999999876655444433
No 430
>PRK08840 replicative DNA helicase; Provisional
Probab=93.07 E-value=1 Score=43.01 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=57.7
Q ss_pred hhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchH
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVR 148 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~ 148 (412)
+.-+..|.-++|.|.||.|||..++-.+.+.... .+..++|...- .-.+|+..++-.... ++....+ .|..+..
T Consensus 211 ~~G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 211 TAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQLDDE 285 (464)
T ss_pred hcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCCCHH
Confidence 3334456677889999999997665444443222 13457776543 334555544433211 2222111 1222222
Q ss_pred HHHH------HhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 149 EDQR------ILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 149 ~~~~------~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
.+.. .+.....+.|- |...+.....+.......+++||||=.|.+.
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 2211 11122345553 3334433222211111257899999999774
No 431
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.02 E-value=0.99 Score=43.66 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=71.8
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh-hcccCcEEEEEEcCcchHHHHHHhc
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL-GDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
+-.+.-.|---|||+.. .+++..+.....+-++.|++.-+.-++-..+++... ..+++-......-+........ .
T Consensus 203 kaTVFLVPRRHGKTWf~-VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~~s~p--g 279 (668)
T PHA03372 203 KATVFLVPRRHGKTWFI-IPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVISIDHR--G 279 (668)
T ss_pred cceEEEecccCCceehH-HHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEEEecC--C
Confidence 44577789999999764 344444444445668999999887766666655432 1222211111100000000000 0
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC-CCCceEEEEeecC
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL-PPKIQVGVFSATM 222 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~ 222 (412)
.+..++.+| ......+..++++++++||||.+.. ..+..++..+ .++.++|++|.|-
T Consensus 280 ~Kst~~fas------c~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 280 AKSTALFAS------CYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred Ccceeeehh------hccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCC
Confidence 011122222 1223345567899999999996543 3344444443 3578899999884
No 432
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.99 E-value=0.53 Score=42.59 Aligned_cols=133 Identities=12% Similarity=0.150 Sum_probs=75.4
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSG 157 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (412)
-+++++=.|+|||.+..-.++..-.. +.++.++|.-.= -.-.+++++..+...++++..-+ +..+.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkk---G~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~ygsy--te~dp-------- 168 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKK---GYKVALVCADTF-RAGAFDQLKQNATKARVPFYGSY--TEADP-------- 168 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhc---CCceeEEeeccc-ccchHHHHHHHhHhhCCeeEecc--cccch--------
Confidence 45779999999997765444444333 345666664321 11134444444433355443321 11111
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 158 VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 158 ~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
+.|+. .-+. .+...++++||+|=.-+.- +.+....+..+.+...++.-++.+-|+...........+
T Consensus 169 --v~ia~-----egv~--~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 169 --VKIAS-----EGVD--RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred --HHHHH-----HHHH--HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 11111 1111 2233578999999876543 333567788888888888889999999876655544443
No 433
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=0.59 Score=42.11 Aligned_cols=60 Identities=10% Similarity=0.177 Sum_probs=35.8
Q ss_pred EEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 160 VVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 160 iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
|-|-....+.+.+...... ...+++|+|++|.+.... ...+.+.+..-+ +..+|++|..+
T Consensus 104 I~id~ir~i~~~l~~~p~~-~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~~ 163 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLE-APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPSP 163 (314)
T ss_pred CcHHHHHHHHHHHccCccc-CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECCh
Confidence 3344444455545444333 467899999999875443 455666666665 66555555443
No 434
>PF12846 AAA_10: AAA-like domain
Probab=92.98 E-value=0.12 Score=46.36 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=26.6
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
+.+++|.|+||+|||..+...+...+..+ ..++++=|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g---~~~~i~D~~ 38 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG---PRVVIFDPK 38 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC---CCEEEEcCC
Confidence 35789999999999988765554444444 456666454
No 435
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.98 E-value=0.44 Score=47.56 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=24.2
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++|+||+|.+.... ...+.+.+...+....+|+.|
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 467899999999876443 334455555545455445444
No 436
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.98 E-value=0.77 Score=46.83 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=16.2
Q ss_pred ccEEEECCCCCCchhHhHH
Q 015158 77 LDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~ 95 (412)
.+.++.||+|+|||..+-.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CceEEECCCCCCHHHHHHH
Confidence 5899999999999977643
No 437
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.97 E-value=0.12 Score=45.58 Aligned_cols=43 Identities=16% Similarity=0.328 Sum_probs=29.3
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
..++++++.|+||||||..+ .+++..+... ..+++.+-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 45688999999999999776 4455555443 2467777665553
No 438
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.92 E-value=0.82 Score=45.24 Aligned_cols=37 Identities=24% Similarity=0.272 Sum_probs=23.8
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEE
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALV 112 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~li 112 (412)
+..|..+.+++|+|||||+..- ++..+... ..+++++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~--LL~r~~~~-~~G~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIK--LLLRLYDP-TSGEILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHH--HHhccCCC-CCCeEEE
Confidence 5567888899999999986543 23333332 2345666
No 439
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.92 E-value=0.92 Score=44.45 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.5
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|+.+.++||+|+|||+..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 446889999999999999654
No 440
>PRK09165 replicative DNA helicase; Provisional
Probab=92.92 E-value=0.47 Score=45.81 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=57.8
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccC------------CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYG------------LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~------------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (412)
..|.-++|.|.||.|||..++-.+.+..... ..+.+++|++.- .-..|+..++..... +++...+
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s--~v~~~~i 291 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQS--EISSSKI 291 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhc--CCCHHHH
Confidence 3455678899999999977655444433211 113467776543 334556555443321 2222211
Q ss_pred -EcCcchHHHHHHh-----cCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 142 -VGGTSVREDQRIL-----SSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 142 -~~~~~~~~~~~~~-----~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
.|......+.... .....+.|- |.+.+.....+... ...+++||||=.|.+.
T Consensus 292 ~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 292 RRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 2222222221110 122345543 34455443332211 1358999999999765
No 441
>PRK04328 hypothetical protein; Provisional
Probab=92.90 E-value=0.2 Score=43.53 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=34.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..++|.+++|+|||..++..+...+..+ .+++|+.- ..-..+..+.+..+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~g---e~~lyis~-ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGVYVAL-EEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEEe-eCCHHHHHHHHHHc
Confidence 56789999999999987766666655443 36777763 33344455555554
No 442
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.90 E-value=0.56 Score=44.66 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=34.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|.-+++.+++|+|||..++..+...... +.+++|+..-. -..|+......+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EE-s~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEE-SLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcC-CHHHHHHHHHHc
Confidence 5678899999999998776655544333 24788887643 345555555544
No 443
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.079 Score=46.45 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.6
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
..|+++.+|||||||+.+
T Consensus 97 KSNILLiGPTGsGKTlLA 114 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA 114 (408)
T ss_pred eccEEEECCCCCcHHHHH
Confidence 358999999999999766
No 444
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=92.83 E-value=1 Score=44.10 Aligned_cols=78 Identities=19% Similarity=0.311 Sum_probs=66.3
Q ss_pred CCCcEEEEEcch----hHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTR----RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+..+.+-+|+. .+...+.+.|...|+.+.++.|.+....|.+++++..+|+.+++|+|- .+...+++.+.-.||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 445678888884 566777888888899999999999999999999999999999999997 558899998888887
Q ss_pred Ecc
Q 015158 352 NYD 354 (412)
Q Consensus 352 ~~~ 354 (412)
+.+
T Consensus 390 iDE 392 (677)
T COG1200 390 IDE 392 (677)
T ss_pred Eec
Confidence 544
No 445
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.75 E-value=0.12 Score=42.71 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=26.8
Q ss_pred ChHHHHhhhhhhh-cCccEEEECCCCCCchhHhHHHHHHhh
Q 015158 62 PSAIQQRGIVPFC-KGLDVIQQAQSGTGKTATFCSGILQQL 101 (412)
Q Consensus 62 l~~~Q~~a~~~~~-~~~~~lv~~~tGsGKT~~~~~~~~~~~ 101 (412)
+.+.|.+.+.... .+..+++.+|||||||..+ -+++..+
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 3555666666644 5788999999999999764 3344443
No 446
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.74 E-value=0.25 Score=43.36 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred hHHHHhhhhhhhc--CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 63 SAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 63 ~~~Q~~a~~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
.+.|.+.+..+.. +..+++.++||||||... .+++..+.. ...+++.+-..
T Consensus 65 ~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~--~~~~iitiEdp 117 (264)
T cd01129 65 KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT--PEKNIITVEDP 117 (264)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC--CCCeEEEECCC
Confidence 4456666665543 346889999999999765 334444432 22345555433
No 447
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.17 Score=49.56 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=29.4
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
++-.++|+|||-..+|......+++.+..+..+ +.+.+=|.
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHHhhcC-CeEEEEeh
Confidence 466789999999888877777777777766655 34444444
No 448
>PRK07004 replicative DNA helicase; Provisional
Probab=92.54 E-value=0.6 Score=44.57 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=67.2
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 151 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (412)
+..|.-++|.|.+|+|||..++-.+...... .+..+++++.- .-..|+..++-... .++....+ .|......+.
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSlE-M~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSME-MPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeCC-CCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHH
Confidence 4445677889999999997765544433221 12356666542 23444444442211 12222211 2222222221
Q ss_pred ------HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC----cHHHHHHHHHhCC-----C
Q 015158 152 ------RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG----FKDQIYDIFQLLP-----P 211 (412)
Q Consensus 152 ------~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~----~~~~~~~i~~~~~-----~ 211 (412)
..+ ....+.|. |+..+.....+-......+++||+|=.|.+.... ....+..+...++ -
T Consensus 285 ~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 363 (460)
T PRK07004 285 KLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 363 (460)
T ss_pred HHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 112 22356553 3444433322211112357899999999775321 2223333333332 2
Q ss_pred CceEEEEeec
Q 015158 212 KIQVGVFSAT 221 (412)
Q Consensus 212 ~~~~i~~SAT 221 (412)
+++++++|--
T Consensus 364 ~ipVi~lsQL 373 (460)
T PRK07004 364 DVPVIALSQL 373 (460)
T ss_pred CCeEEEEecc
Confidence 5666666643
No 449
>CHL00176 ftsH cell division protein; Validated
Probab=92.54 E-value=0.66 Score=46.09 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+.+++.+|+|+|||..+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999765
No 450
>PRK05748 replicative DNA helicase; Provisional
Probab=92.48 E-value=0.76 Score=43.90 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=68.9
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 151 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (412)
+..|.-++|.|.||.|||..++-.+...... .+..+++++.- .-..|+..++..... ++....+ .|......+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fSlE-ms~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFSLE-MGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEeCC-CCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 3345678889999999997766555543322 12357776543 334455555432111 2222111 1222222221
Q ss_pred HH-----hcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC-----cHHHHHHHHHhCC-----C
Q 015158 152 RI-----LSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG-----FKDQIYDIFQLLP-----P 211 (412)
Q Consensus 152 ~~-----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~-----~~~~~~~i~~~~~-----~ 211 (412)
.. ...+..+.|. |++.+...+.+......++++||||=.|.+.... ....+..+...+. .
T Consensus 275 ~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 275 KLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11 1122345543 3444444333211111257899999999874221 1223333333331 2
Q ss_pred CceEEEEeecC
Q 015158 212 KIQVGVFSATM 222 (412)
Q Consensus 212 ~~~~i~~SAT~ 222 (412)
++.++++|-..
T Consensus 355 ~i~vi~lsQln 365 (448)
T PRK05748 355 KVPVIALSQLS 365 (448)
T ss_pred CCeEEEecccC
Confidence 56667766654
No 451
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.31 E-value=0.23 Score=52.98 Aligned_cols=55 Identities=31% Similarity=0.409 Sum_probs=44.8
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccC--CCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYG--LVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.+++++|.|..|||||.+....++..+..+ ..-..+|+++-|++-+.++..++..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 357899999999999999887777777663 3456899999999988888777655
No 452
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.31 E-value=0.19 Score=46.98 Aligned_cols=56 Identities=29% Similarity=0.266 Sum_probs=37.6
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (412)
++++.||||+|||.+++++-+... ...++++=|--++........+.. |.+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~----G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL----GRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc----CCeEEEEc
Confidence 478999999999988765544332 236777778777877666555443 45555554
No 453
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.27 E-value=0.16 Score=43.40 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=29.6
Q ss_pred eChHHHHHHHHcCCCCCCCceEEEEeCCchhh-c----cCcHHHHHHHHHhCCC-CceEEEEeecC
Q 015158 163 GTPGRVFDMLRRQSLRPDNIRIFVLDEADEML-S----RGFKDQIYDIFQLLPP-KIQVGVFSATM 222 (412)
Q Consensus 163 ~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~-~----~~~~~~~~~i~~~~~~-~~~~i~~SAT~ 222 (412)
.+...+...+..... . -+||+||+|.+. . ..+...+..++..... ....+.++++.
T Consensus 104 ~~l~~~~~~l~~~~~---~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 104 SALERLLEKLKKKGK---K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp --HHHHHHHHHHCHC---C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHhcCC---c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 334445555544322 2 589999999988 2 2244566666655322 23345566665
No 454
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=1.1 Score=41.72 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=27.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCcee-EEEEcCCHHHHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ-ALVLAPTRELAQQIEK 125 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~-~lil~P~~~L~~q~~~ 125 (412)
+.+..|.+.+|+|||.+.-. ++........... +-+=|-+...+...+.
T Consensus 175 ~gSlYVsG~PGtgkt~~l~r-vl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLSR-VLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CcceEeeCCCCcchHHHHHH-HHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 35789999999999977533 3334433333323 3333443345444444
No 455
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.25 E-value=0.86 Score=43.37 Aligned_cols=143 Identities=17% Similarity=0.085 Sum_probs=68.6
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 151 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (412)
+..|.-++|.|++|+|||..++-.+...... .+..+++++.-. -..++.+++..... ++....+ .|......+.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~~vl~~SlEm-~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--EGKPVAFFSLEM-SAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCeEEEEeCcC-CHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 3345667889999999997766555544322 123677776432 34444444433221 2222111 1221211111
Q ss_pred ------HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC----cHHHHHHHHHhCC-----C
Q 015158 152 ------RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG----FKDQIYDIFQLLP-----P 211 (412)
Q Consensus 152 ------~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~----~~~~~~~i~~~~~-----~ 211 (412)
..... ..+.|. |.+.+...+.+.... ..+++||||=.+.+.... ....+..+...+. .
T Consensus 267 ~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~ 344 (434)
T TIGR00665 267 KLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL 344 (434)
T ss_pred HHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 11122 234442 344444333321111 247899999988764322 2223333333332 3
Q ss_pred CceEEEEeecC
Q 015158 212 KIQVGVFSATM 222 (412)
Q Consensus 212 ~~~~i~~SAT~ 222 (412)
++.++++|-..
T Consensus 345 ~i~vi~lsqln 355 (434)
T TIGR00665 345 NVPVIALSQLS 355 (434)
T ss_pred CCeEEEEeccC
Confidence 66667766543
No 456
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.25 E-value=1.6 Score=44.45 Aligned_cols=20 Identities=30% Similarity=0.272 Sum_probs=16.6
Q ss_pred CccEEEECCCCCCchhHhHH
Q 015158 76 GLDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~ 95 (412)
..+.++.||+|+|||..+-.
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 36899999999999977643
No 457
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.24 E-value=1.2 Score=41.27 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=15.4
Q ss_pred ccEEEECCCCCCchhHhHH
Q 015158 77 LDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~ 95 (412)
+..++.||+|+|||..+..
T Consensus 40 ~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARI 58 (367)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3678999999999976643
No 458
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=92.21 E-value=0.067 Score=57.25 Aligned_cols=94 Identities=26% Similarity=0.381 Sum_probs=76.3
Q ss_pred CcEEEEEcchhHHHHHHHHHhcCCC-eeEEecCCC-----------CHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDM-----------DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 346 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~~~-~~~~~~~~~-----------~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~ 346 (412)
=..++|++....+....+.+++.+. ++..+.|.+ ....+.+++..|...++++|++|.++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 3579999999999888888876422 233344432 1223678899999999999999999999999999
Q ss_pred CCEEEEccCCCChhhHHHhhhhcccC
Q 015158 347 VSLVINYDLPTQPENYLHRIGRSGRF 372 (412)
Q Consensus 347 ~~~vi~~~~~~s~~~~~Q~~GR~~R~ 372 (412)
++.++.+..|...+.|+|..||+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999765
No 459
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.20 E-value=0.13 Score=46.27 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=15.2
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
+++++.||+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 460
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.10 E-value=3.1 Score=39.86 Aligned_cols=99 Identities=15% Similarity=0.190 Sum_probs=74.7
Q ss_pred CCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCc
Q 015158 84 QSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVH 159 (412)
Q Consensus 84 ~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 159 (412)
-.+.||+..-++++.+.+..+ -.+.++|.+-+..-+.|+++.+..+ .++++..++|.......... ..+...
T Consensus 365 lvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qrde~~~~FR~g~Iw 440 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQRDETMERFRIGKIW 440 (593)
T ss_pred heeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHHHHHHHHHhccCee
Confidence 357888888888888777776 4556888899999999999888733 37889999998665444322 246678
Q ss_pred EEEeChHHHHHHHHcCCCCCCCceEEEEeCCch
Q 015158 160 VVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 160 iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~ 192 (412)
++||| ..+.++ +++.++.+||-++.-.
T Consensus 441 vLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 441 VLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred EEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 99999 666654 7888999999977664
No 461
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=92.04 E-value=0.3 Score=49.49 Aligned_cols=70 Identities=21% Similarity=0.159 Sum_probs=55.9
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
-..+|-|.+++..-...+.+.+++|+|+|||-.+.- ++.-+.+..+.++++|++.+..-..|.++...+.
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 346788999998888888999999999999977643 4445555667889999999988888888877654
No 462
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.02 E-value=0.2 Score=43.81 Aligned_cols=37 Identities=16% Similarity=-0.015 Sum_probs=27.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
|.-++|.+++|+|||..++..+...+.. +.+++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 5678999999999998777666655443 347888773
No 463
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=91.94 E-value=0.57 Score=40.28 Aligned_cols=42 Identities=17% Similarity=-0.022 Sum_probs=27.4
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTR 117 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 117 (412)
|.-+.+.+++|+|||..++..++...... ..+..++++....
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 56678999999999987766555433221 0124688877543
No 464
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=1.1 Score=42.49 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=29.3
Q ss_pred CceEEEEeCCchhhccC-------cHHHHHHHHHh---CCCCceEEEEeecCChH
Q 015158 181 NIRIFVLDEADEMLSRG-------FKDQIYDIFQL---LPPKIQVGVFSATMPPE 225 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~-------~~~~~~~i~~~---~~~~~~~i~~SAT~~~~ 225 (412)
.-.+|+|||++.+.... ....+..++.. +..+.-+|.+.||--++
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 45789999999865322 12334444433 45677799999997654
No 465
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.90 E-value=2.1 Score=41.65 Aligned_cols=113 Identities=13% Similarity=0.208 Sum_probs=71.8
Q ss_pred EEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CCcCC-CCCCCCCE
Q 015158 281 SVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVSL 349 (412)
Q Consensus 281 ~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~~G-~d~~~~~~ 349 (412)
+||++++++.|.++++.+... +..+..++|+.+...+...++ .| .+|||+|+ .+..+ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998888643 567889999988766654444 45 99999998 34444 88888999
Q ss_pred EEEccC--CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhc
Q 015158 350 VINYDL--PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 350 vi~~~~--~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
+|+.+- -.++ -|..-+-+..+.-+.....++++..-...+..+.+-+.
T Consensus 178 lVlDEADrmLd~-Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l 227 (513)
T COG0513 178 LVLDEADRMLDM-GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYL 227 (513)
T ss_pred EEeccHhhhhcC-CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHc
Confidence 886432 1222 23333333333322345556666543334555544443
No 466
>PRK08006 replicative DNA helicase; Provisional
Probab=91.88 E-value=1.5 Score=42.06 Aligned_cols=145 Identities=19% Similarity=0.081 Sum_probs=70.1
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE-cCcchHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVRED 150 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 150 (412)
-+..|.-++|.|.+|.|||..++-.+.+.... .+..++|...- .-..|+..++-... .++....+. |..+...+
T Consensus 220 Gl~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlE-M~~~ql~~Rlla~~--~~v~~~~i~~~~l~~~e~ 294 (471)
T PRK08006 220 GLQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLE-MPGEQIMMRMLASL--SRVDQTRIRTGQLDDEDW 294 (471)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHHh--cCCCHHHhhcCCCCHHHH
Confidence 34445667889999999997765544443322 12357766543 33455555444321 122222222 22222222
Q ss_pred HH------HhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc----CcHHHHHHHHHhCC-----
Q 015158 151 QR------ILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR----GFKDQIYDIFQLLP----- 210 (412)
Q Consensus 151 ~~------~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~----~~~~~~~~i~~~~~----- 210 (412)
.. .......+.|- |...+.....+.......+++||||=.|.+... +....+..+...++
T Consensus 295 ~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 374 (471)
T PRK08006 295 ARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKE 374 (471)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 11 11123345553 344443333221111235899999999976422 12223444333332
Q ss_pred CCceEEEEeec
Q 015158 211 PKIQVGVFSAT 221 (412)
Q Consensus 211 ~~~~~i~~SAT 221 (412)
-++.++++|-.
T Consensus 375 l~ipVi~LsQL 385 (471)
T PRK08006 375 LQVPVVALSQL 385 (471)
T ss_pred hCCeEEEEEec
Confidence 26667777744
No 467
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.79 E-value=0.17 Score=44.35 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=22.0
Q ss_pred HhhhhhhhcCccEEEECCCCCCchhHhH
Q 015158 67 QRGIVPFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 67 ~~a~~~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
++++..+..+.++++.||+|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3444556678899999999999998764
No 468
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.99 Score=43.85 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=39.9
Q ss_pred hhhhccccccCCCCHHHHHHHHH---CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 34 YDEVYDTFDAMGLQENLLRGIYA---YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 34 ~~~~~~~f~~~~l~~~~~~~l~~---~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+.+-.+|++.+=-+++.+.|+. ++...|-.+.+..+ ...+.+++-+|+|+|||+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 55556788888877777777763 45555555555542 23467999999999999876
No 469
>PRK10436 hypothetical protein; Provisional
Probab=91.77 E-value=0.31 Score=46.32 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=26.7
Q ss_pred ChHHHHhhhhhhhc--CccEEEECCCCCCchhHhHHHHHHhhc
Q 015158 62 PSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLD 102 (412)
Q Consensus 62 l~~~Q~~a~~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~ 102 (412)
+.+.|.+.+..+.. +.-+++.+|||||||.+. .+++..+.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 34556666666543 356789999999999875 34555543
No 470
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.76 E-value=1.2 Score=36.02 Aligned_cols=45 Identities=7% Similarity=0.105 Sum_probs=32.2
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
++|.+++|||||..+...+.. .+.+++|+........++.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999877655433 224788888777776666666554
No 471
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=91.74 E-value=0.61 Score=45.96 Aligned_cols=67 Identities=19% Similarity=-0.019 Sum_probs=50.7
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCHHHHHHHHHHHH
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
+-.-|..|+...+..+-.++.+|+|+|||.+.+.++-..+.+. ...-.++++|-|..-++|....+.
T Consensus 379 ldsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy 448 (1025)
T KOG1807|consen 379 LDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIY 448 (1025)
T ss_pred ecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHH
Confidence 4556999999888888889999999999988776655444332 223469999999988888766544
No 472
>PRK08760 replicative DNA helicase; Provisional
Probab=91.72 E-value=0.88 Score=43.67 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=57.7
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ 151 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 151 (412)
+..|.-++|.|.+|.|||..++-.+...... .+..++|.+.- .-..|+..++..... ++....+ .|......+.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~--~g~~V~~fSlE-Ms~~ql~~Rl~a~~s--~i~~~~i~~g~l~~~e~~ 300 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIK--SKKGVAVFSME-MSASQLAMRLISSNG--RINAQRLRTGALEDEDWA 300 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHh--cCCceEEEecc-CCHHHHHHHHHHhhC--CCcHHHHhcCCCCHHHHH
Confidence 3445667889999999997766555444322 12357776543 234556655544321 1211111 1222222221
Q ss_pred ------HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 152 ------RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 152 ------~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
..+ ....+.|. |++.+.....+... ...+++||||=.+.+.
T Consensus 301 ~~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 301 RVTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 111 12345443 34454443332111 1357899999998764
No 473
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.59 E-value=0.34 Score=46.62 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=35.5
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.++++.||||||||..++++.+-. .. ..++|.=|--+|...+...+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~~---~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--YP---GSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--cc---CCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999887765532 21 25777778778877777666554
No 474
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.59 E-value=0.39 Score=51.68 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=44.9
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.++++|.++.|||||.+...-++..+..+....++++++-|+.-+.++.+++...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHH
Confidence 4688999999999998887777777666555668999999999888887776654
No 475
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.43 E-value=0.3 Score=41.21 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=27.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
|.-+.+.+|+|+|||..++..+...... +.+++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 5678899999999998776655554433 3467777764
No 476
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.43 E-value=0.38 Score=42.74 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.2
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+.++++.||+|+|||.++-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998763
No 477
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.41 E-value=0.16 Score=33.04 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.1
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
|...++.+++|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 446899999999999764
No 478
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.41 E-value=0.3 Score=41.07 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=23.7
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
+.+..+++|.++||||||.+....+...+....+..--++++..+
T Consensus 35 l~~~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 35 LKKNPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp GGGS-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred cCCCceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 334558999999999999776544444444222223345555443
No 479
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.38 E-value=0.48 Score=40.43 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=35.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..+++.+++|+|||..++..+...+..+ .+++|++-.. -.++..+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g---~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNG---EKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCC-CHHHHHHHHHHc
Confidence 56788999999999977666565555433 4788877644 456666666665
No 480
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.27 E-value=0.4 Score=41.82 Aligned_cols=42 Identities=17% Similarity=0.118 Sum_probs=26.5
Q ss_pred cEEEECCCCCCchhHhHHHHHHh-hcc--CCCceeEEEEcCCHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQ-LDY--GLVECQALVLAPTREL 119 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~-~~~--~~~~~~~lil~P~~~L 119 (412)
-+=++++.|+|||...+..++.. +.. +..+.+++|+.-....
T Consensus 40 itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 40 ITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred EEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 34579999999996555444433 322 2345679998765543
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.15 E-value=0.29 Score=42.87 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=37.0
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.|+.++|.+++|+|||.-.+..+...+..+ .++++++-. +...+..+.+..+
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g---e~vlyvs~~-e~~~~l~~~~~~~ 73 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREG---EPVLYVSTE-ESPEELLENARSF 73 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcC---CcEEEEEec-CCHHHHHHHHHHc
Confidence 367899999999999988777777766653 478887754 4445555555554
No 482
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.15 E-value=0.56 Score=38.89 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=35.2
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccC-------CCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYG-------LVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-------~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.|.-+++.|++|+|||...+..+....... ....+++|+..-.. ..++.+.+.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 567789999999999977665555444311 13457888876555 5567777776543
No 483
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.06 E-value=0.37 Score=46.29 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=27.1
Q ss_pred ChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhc
Q 015158 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLD 102 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~ 102 (412)
+.+.|.+.+..+... .-+++.+|||||||.+. .+++..+.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 356677777766553 34689999999999775 33455543
No 484
>COG5410 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.06 E-value=0.79 Score=38.06 Aligned_cols=66 Identities=15% Similarity=0.032 Sum_probs=47.2
Q ss_pred HhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 67 QRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 67 ~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
..-+.++..| +++++..|+|+-|+.+.....-..+....+.++++.+.-+..|+.+..+.++...+
T Consensus 48 ~~~L~~Vi~G~~k~~Iin~PP~~skS~~Vs~~~PaY~L~~NP~KR~~~~SYSd~La~~~s~~~r~ii~ 115 (305)
T COG5410 48 AGVLDDVIAGRRKDVIINVPPGSSKSELVAINVPAYGLALNPYKRFLHISYSDDLALLNSETAREIVQ 115 (305)
T ss_pred HHHHHHHhccccceEEEecCCccccceEEEeechhhhhhcCccceEEEeeHhHHHHHHhchHHHHHHh
Confidence 3445556666 68899999999999765443333433344667899999999999988887776543
No 485
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.91 E-value=1.8 Score=39.35 Aligned_cols=142 Identities=16% Similarity=0.135 Sum_probs=73.8
Q ss_pred ChHHHHhhhhhhhcCcc------EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 62 PSAIQQRGIVPFCKGLD------VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~------~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
-+..|..-+..++.+++ +++.|.+|+|||.+.. .++... +...+++++..- -.+..-+.++....+
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-~~l~~~-----n~~~vw~n~~ec--ft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-QLLRKL-----NLENVWLNCVEC--FTYAILLEKILNKSQ 81 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-HHHhhc-----CCcceeeehHHh--ccHHHHHHHHHHHhc
Confidence 57888888888887643 3889999999997643 333332 235677766321 111112222211111
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC--CCCceEEEEeCCchhhccC--cHHHHHHHHHhCCC
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLR--PDNIRIFVLDEADEMLSRG--FKDQIYDIFQLLPP 211 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~--~~~~~~iiiDE~h~~~~~~--~~~~~~~i~~~~~~ 211 (412)
.......... +..-+...+.+.+.++... .+.--++|+|-++.+.+.+ ....+.++...++.
T Consensus 82 -----~~d~dg~~~~---------~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~ 147 (438)
T KOG2543|consen 82 -----LADKDGDKVE---------GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNE 147 (438)
T ss_pred -----cCCCchhhhh---------hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCC
Confidence 0000000000 0001111223333321111 1223489999999988766 23444555566666
Q ss_pred CceEEEEeecCChH
Q 015158 212 KIQVGVFSATMPPE 225 (412)
Q Consensus 212 ~~~~i~~SAT~~~~ 225 (412)
+.-.+.+|+++.+.
T Consensus 148 ~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 148 PTIVIILSAPSCEK 161 (438)
T ss_pred CceEEEEeccccHH
Confidence 77789999998764
No 486
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.88 E-value=0.52 Score=46.40 Aligned_cols=57 Identities=19% Similarity=0.089 Sum_probs=41.0
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV 142 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (412)
+++++.||||||||..++++-+-... ..++|+=|--++...+....++. |..|..+.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-----~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vfd 215 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-----DSVVVHDIKLENYELTSGWREKQ----GQKVFVWE 215 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-----CCEEEEeCcHHHHHHHHHHHHHC----CCeEEEEe
Confidence 57899999999999988777765431 35777778778887777666554 55555554
No 487
>PRK14701 reverse gyrase; Provisional
Probab=90.81 E-value=2.1 Score=47.44 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=53.3
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 337 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~ 337 (412)
.+.+++|.+|+++-+.++++.++.. +..+..+||+++..++..+++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4458999999999999999888762 456788999999999999999999999999999983
No 488
>PRK05636 replicative DNA helicase; Provisional
Probab=90.75 E-value=1.5 Score=42.36 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=52.8
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEE-cCcchHHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACV-GGTSVREDQRI 153 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 153 (412)
.|.-++|.|.||.|||..++-.+...... .+..+++.+. ..-..|+..++-... .++....+. |..+...+...
T Consensus 264 ~G~Liiiaarpg~GKT~~al~~a~~~a~~--~g~~v~~fSl-EMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~~~~ 338 (505)
T PRK05636 264 GGQMIIVAARPGVGKSTLALDFMRSASIK--HNKASVIFSL-EMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAWEKL 338 (505)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEe-eCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHH
Confidence 34566889999999997665444333221 1235666643 222344444332211 122221111 22222222111
Q ss_pred -----hcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 154 -----LSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 154 -----~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
......+.|- |.+.+....++... ...+++||||=.|.+.
T Consensus 339 ~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 339 VQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 0122345553 33334333322111 1358899999999875
No 489
>PRK06321 replicative DNA helicase; Provisional
Probab=90.67 E-value=1.7 Score=41.59 Aligned_cols=112 Identities=15% Similarity=0.048 Sum_probs=55.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE-EcCcchHHHH---
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC-VGGTSVREDQ--- 151 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 151 (412)
|.-++|.|.+|.|||..++-.+...... .+..+++++.- .-..|+.+++.... .++....+ .+......+.
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~--~g~~v~~fSLE-Ms~~ql~~Rlla~~--s~v~~~~i~~~~l~~~e~~~~~ 300 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQ--NRLPVGIFSLE-MTVDQLIHRIICSR--SEVESKKISVGDLSGRDFQRIV 300 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHhh--cCCCHHHhhcCCCCHHHHHHHH
Confidence 4556889999999997665533332211 12356666542 23444555443321 12222222 2222222221
Q ss_pred ---HHhcCCCcEEEe-----ChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 152 ---RILSSGVHVVVG-----TPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 152 ---~~~~~~~~iii~-----T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
..+ ....+.|- |.+.+.....+... ...+++||||=.|.+.
T Consensus 301 ~a~~~l-~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 301 SVVNEM-QEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHH-HcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 111 22345554 44445443332211 1358899999999875
No 490
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.63 E-value=1.7 Score=44.77 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=15.2
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356889999999999765
No 491
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=90.60 E-value=1.3 Score=46.11 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=62.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHH----hcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKM----RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L----~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.++.+.|.+|+-=-|++=++.+ ....+++..++.-.+.++...+++...+|+++|||+|= .++.++-+++.-.+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 4467899999975555555555 44577888898888999999999999999999999985 889999999988888
Q ss_pred E
Q 015158 352 N 352 (412)
Q Consensus 352 ~ 352 (412)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 4
No 492
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.59 E-value=0.45 Score=45.90 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=37.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..++|.+|+|+|||...+..+...+..+ .+++|++- .+-.+|..+.+..+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANK---ERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEe-eCCHHHHHHHHHHc
Confidence 45789999999999988877777665543 47888774 45566777777665
No 493
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=90.54 E-value=0.39 Score=45.87 Aligned_cols=41 Identities=10% Similarity=0.353 Sum_probs=24.8
Q ss_pred CCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 179 PDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
..++++.|+||+|.+....|...+ +.+..-|.++.+|+.|-
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALL-KTLEEPP~hV~FIlATT 157 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALL-KTLEEPPSHVKFILATT 157 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHh-cccccCccCeEEEEecC
Confidence 357899999999987766544333 33343444554444443
No 494
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=90.34 E-value=0.37 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=27.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
++++.|.|.||||||.+.-..+. .+.. ..+..++|+=|.-+
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~-~l~~-~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLE-ELLK-KKGAKVIIFDPHGE 63 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHH-HHHh-cCCCCEEEEcCCCc
Confidence 46899999999999987644333 3331 23346777767544
No 495
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.29 E-value=1.7 Score=45.28 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.2
Q ss_pred ccEEEECCCCCCchhHhHH
Q 015158 77 LDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~ 95 (412)
++.++.||+|+|||..+-.
T Consensus 195 ~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CceEEEcCCCCCHHHHHHH
Confidence 6889999999999977643
No 496
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.27 E-value=0.44 Score=40.48 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=26.1
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
|.-+.|.+++|+|||..++..+...... +.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE
Confidence 4568899999999998776666555433 34788874
No 497
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=90.23 E-value=0.85 Score=47.15 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcC
Q 015158 67 QRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGG 144 (412)
Q Consensus 67 ~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~ 144 (412)
.+.+..+..+ .+.+++||+|+||| ++++..++.+.. +.....+.+.
T Consensus 197 ~~~i~~l~r~~~~n~lLvG~pGvGKT---------------------------al~~~La~~i~~-----~~v~~~l~~~ 244 (852)
T TIGR03345 197 RQMIDILLRRRQNNPILTGEAGVGKT---------------------------AVVEGLALRIAA-----GDVPPALRNV 244 (852)
T ss_pred HHHHHHHhcCCcCceeEECCCCCCHH---------------------------HHHHHHHHHHhh-----CCCCccccCC
Q ss_pred cchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC---cHHHHHHHHHhCCCCceEEEEeec
Q 015158 145 TSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG---FKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 145 ~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
.-.......+..+....--..+.+...+....-...+. ++++||+|.+...+ -......++...-....+.++.||
T Consensus 245 ~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~-ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaT 323 (852)
T TIGR03345 245 RLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPI-ILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAAT 323 (852)
T ss_pred eEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCe-EEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEec
Q ss_pred CChHHHHHHH
Q 015158 222 MPPEALEITR 231 (412)
Q Consensus 222 ~~~~~~~~~~ 231 (412)
-..+....+.
T Consensus 324 T~~e~~~~~~ 333 (852)
T TIGR03345 324 TWAEYKKYFE 333 (852)
T ss_pred CHHHHhhhhh
No 498
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.19 E-value=2 Score=38.87 Aligned_cols=39 Identities=5% Similarity=0.276 Sum_probs=26.0
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+.... ...+.+.+...|++..++++|
T Consensus 92 ~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 467899999999875443 445556666656566555554
No 499
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.18 E-value=1.4 Score=37.88 Aligned_cols=93 Identities=11% Similarity=0.185 Sum_probs=63.9
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCC----CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhh
Q 015158 292 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 367 (412)
Q Consensus 292 ~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~----~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~G 367 (412)
..+.+.+.. +..+..++++.+... -.+.+++ ..|+|+-+.+++|+.+++..+.++...+.....+.||.-
T Consensus 101 ~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgR 174 (239)
T PF10593_consen 101 PELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGR 174 (239)
T ss_pred HHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhh
Confidence 344444444 678888887654432 3344443 678888999999999999999999998888888888754
Q ss_pred hcc-cCCCCceEEEEeccCcHHHH
Q 015158 368 RSG-RFGRKGVAINFVTRDDERML 390 (412)
Q Consensus 368 R~~-R~g~~g~~~~~~~~~~~~~~ 390 (412)
-.| |.|-...|=++.++.-.+.+
T Consensus 175 wFGYR~gY~dl~Ri~~~~~l~~~f 198 (239)
T PF10593_consen 175 WFGYRPGYEDLCRIYMPEELYDWF 198 (239)
T ss_pred cccCCcccccceEEecCHHHHHHH
Confidence 443 44445678878777544333
No 500
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.17 E-value=0.61 Score=41.93 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=31.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQ 121 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 121 (412)
|+-+.|.+|+|+|||..++..+...... +.+++|+-.-..+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 5678899999999998877666665543 357888766555444
Done!