Query 015158
Match_columns 412
No_of_seqs 182 out of 2273
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 07:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.1E-60 1.1E-64 446.6 43.8 373 37-411 54-434 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.5E-60 5.2E-65 447.8 40.6 377 36-412 34-410 (410)
3 3eiq_A Eukaryotic initiation f 100.0 4.9E-60 1.7E-64 445.1 37.2 384 29-412 30-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 2.6E-58 9E-63 433.7 39.9 375 36-411 12-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 6.1E-58 2.1E-62 428.8 41.7 372 37-410 19-390 (400)
6 1xti_A Probable ATP-dependent 100.0 1.1E-56 3.9E-61 419.0 41.5 369 39-408 8-381 (391)
7 1fuu_A Yeast initiation factor 100.0 1.6E-59 5.3E-64 438.9 21.4 386 26-412 8-393 (394)
8 3pey_A ATP-dependent RNA helic 100.0 9.4E-56 3.2E-60 413.4 39.5 366 37-406 3-379 (395)
9 1hv8_A Putative ATP-dependent 100.0 4.3E-55 1.5E-59 404.9 41.9 361 37-405 4-365 (367)
10 3fht_A ATP-dependent RNA helic 100.0 2.1E-55 7.1E-60 413.4 40.1 368 37-407 23-402 (412)
11 3fmp_B ATP-dependent RNA helic 100.0 5.4E-55 1.8E-59 417.5 21.4 366 38-406 91-468 (479)
12 2z0m_A 337AA long hypothetical 100.0 3.3E-52 1.1E-56 381.0 36.4 335 46-398 1-335 (337)
13 3sqw_A ATP-dependent RNA helic 100.0 3.3E-52 1.1E-56 406.3 36.0 358 45-402 27-415 (579)
14 3fho_A ATP-dependent RNA helic 100.0 4.5E-54 1.5E-58 412.1 21.9 364 40-407 120-493 (508)
15 3i5x_A ATP-dependent RNA helic 100.0 1.1E-51 3.9E-56 402.5 36.1 357 46-402 79-466 (563)
16 2v1x_A ATP-dependent DNA helic 100.0 7.8E-51 2.7E-55 393.0 34.1 344 38-393 18-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 9.1E-51 3.1E-55 389.0 31.7 339 39-394 2-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 6.5E-48 2.2E-52 362.0 26.2 325 50-398 10-376 (414)
19 2zj8_A DNA helicase, putative 100.0 1.2E-46 4.2E-51 375.9 29.1 350 40-405 2-405 (720)
20 2va8_A SSO2462, SKI2-type heli 100.0 7.5E-46 2.6E-50 370.4 34.1 351 39-405 8-427 (715)
21 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-46 5.2E-51 374.2 22.9 349 40-405 2-406 (702)
22 2ykg_A Probable ATP-dependent 100.0 2.2E-46 7.5E-51 374.4 19.9 353 51-405 3-540 (696)
23 4a2p_A RIG-I, retinoic acid in 100.0 8.2E-46 2.8E-50 361.4 22.7 328 60-389 6-512 (556)
24 2xgj_A ATP-dependent RNA helic 100.0 6.6E-44 2.2E-48 362.4 36.4 318 56-390 82-505 (1010)
25 3l9o_A ATP-dependent RNA helic 100.0 2.6E-45 8.7E-50 375.8 26.2 348 40-405 163-615 (1108)
26 1wp9_A ATP-dependent RNA helic 100.0 2.2E-44 7.6E-49 346.0 30.8 323 61-388 9-478 (494)
27 3tbk_A RIG-I helicase domain; 100.0 5.5E-45 1.9E-49 355.6 26.1 331 61-393 4-515 (555)
28 4a2q_A RIG-I, retinoic acid in 100.0 3.3E-44 1.1E-48 361.6 27.8 331 56-389 243-753 (797)
29 4a4z_A Antiviral helicase SKI2 100.0 1.4E-42 4.8E-47 352.7 32.2 310 56-382 35-489 (997)
30 4a2w_A RIG-I, retinoic acid in 100.0 6.9E-43 2.4E-47 355.4 28.0 331 56-388 243-752 (936)
31 4ddu_A Reverse gyrase; topoiso 100.0 7.3E-43 2.5E-47 357.6 26.4 321 56-398 74-503 (1104)
32 4gl2_A Interferon-induced heli 100.0 7.1E-43 2.4E-47 349.2 21.1 322 61-385 7-519 (699)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 5.7E-43 1.9E-47 358.7 19.7 321 55-399 52-468 (1054)
34 1gm5_A RECG; helicase, replica 100.0 2.7E-42 9.1E-47 340.2 22.1 326 48-393 356-705 (780)
35 2eyq_A TRCF, transcription-rep 100.0 1.4E-40 4.6E-45 343.0 33.0 321 45-385 587-922 (1151)
36 4f92_B U5 small nuclear ribonu 100.0 2E-40 6.9E-45 350.8 32.8 340 46-391 911-1314(1724)
37 2oca_A DAR protein, ATP-depend 100.0 1.3E-41 4.4E-46 327.7 21.4 309 61-383 113-453 (510)
38 4f92_B U5 small nuclear ribonu 100.0 2.4E-40 8.2E-45 350.2 25.5 330 58-392 76-480 (1724)
39 2fwr_A DNA repair protein RAD2 100.0 2.2E-40 7.4E-45 316.0 20.5 292 61-385 93-454 (472)
40 1tf5_A Preprotein translocase 100.0 4.7E-39 1.6E-43 311.1 29.9 322 56-387 79-547 (844)
41 2whx_A Serine protease/ntpase/ 100.0 2E-40 6.7E-45 321.3 16.3 321 44-405 155-501 (618)
42 2xau_A PRE-mRNA-splicing facto 100.0 1.3E-38 4.3E-43 316.2 21.5 336 36-387 69-445 (773)
43 2jlq_A Serine protease subunit 100.0 2E-38 6.8E-43 298.8 20.5 287 58-384 1-310 (451)
44 3h1t_A Type I site-specific re 100.0 8.3E-39 2.8E-43 312.9 18.4 313 61-388 178-562 (590)
45 2fsf_A Preprotein translocase 100.0 1.8E-37 6.3E-42 299.2 23.4 322 57-388 71-586 (853)
46 2wv9_A Flavivirin protease NS2 100.0 1.9E-38 6.6E-43 309.2 16.6 307 61-406 215-557 (673)
47 3o8b_A HCV NS3 protease/helica 100.0 1.4E-38 4.7E-43 305.4 15.2 293 61-403 217-536 (666)
48 1nkt_A Preprotein translocase 100.0 3.7E-36 1.3E-40 290.4 31.7 323 57-389 108-621 (922)
49 1yks_A Genome polyprotein [con 100.0 7.2E-38 2.5E-42 293.6 19.2 296 72-406 4-323 (440)
50 3dmq_A RNA polymerase-associat 100.0 2.3E-37 7.7E-42 315.3 21.6 332 61-397 153-625 (968)
51 2v6i_A RNA helicase; membrane, 100.0 1.2E-36 4.1E-41 284.8 22.0 269 75-382 1-288 (431)
52 1z63_A Helicase of the SNF2/RA 100.0 6.8E-36 2.3E-40 287.1 27.3 309 61-385 37-453 (500)
53 2z83_A Helicase/nucleoside tri 100.0 3.9E-37 1.3E-41 290.4 17.5 276 67-385 12-313 (459)
54 3ber_A Probable ATP-dependent 100.0 5.9E-35 2E-39 253.5 24.5 226 17-242 21-247 (249)
55 1vec_A ATP-dependent RNA helic 100.0 2.4E-34 8.4E-39 243.3 25.3 202 39-240 3-205 (206)
56 3fe2_A Probable ATP-dependent 100.0 8.2E-35 2.8E-39 252.2 22.7 210 36-245 26-240 (242)
57 1qde_A EIF4A, translation init 100.0 1.1E-34 3.9E-39 248.7 22.4 214 31-245 6-219 (224)
58 3rc3_A ATP-dependent RNA helic 100.0 1.3E-34 4.5E-39 281.3 25.0 286 71-396 150-455 (677)
59 3bor_A Human initiation factor 100.0 1E-34 3.5E-39 250.7 20.8 215 28-242 19-234 (237)
60 1z3i_X Similar to RAD54-like; 100.0 2.2E-33 7.5E-38 275.3 31.5 318 61-385 55-528 (644)
61 3mwy_W Chromo domain-containin 100.0 2.9E-34 1E-38 288.4 25.9 330 61-398 236-699 (800)
62 1q0u_A Bstdead; DEAD protein, 100.0 1.8E-34 6.2E-39 246.3 19.8 207 38-244 3-213 (219)
63 2oxc_A Probable ATP-dependent 100.0 7.5E-34 2.6E-38 244.2 22.5 205 36-241 21-227 (230)
64 3iuy_A Probable ATP-dependent 100.0 9.5E-34 3.3E-38 243.5 21.7 206 35-241 15-227 (228)
65 1wrb_A DJVLGB; RNA helicase, D 100.0 6.3E-34 2.2E-38 248.5 19.5 217 37-253 21-250 (253)
66 2gxq_A Heat resistant RNA depe 100.0 4.3E-33 1.5E-37 235.9 23.5 201 40-242 2-205 (207)
67 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 4.6E-33 1.6E-37 281.4 26.7 319 61-391 271-713 (1038)
68 1t6n_A Probable ATP-dependent 100.0 3.7E-33 1.3E-37 238.5 22.1 204 38-241 13-219 (220)
69 2pl3_A Probable ATP-dependent 100.0 1.1E-32 3.7E-37 238.2 23.7 207 36-243 22-233 (236)
70 3ly5_A ATP-dependent RNA helic 100.0 1.6E-32 5.4E-37 240.1 21.2 200 39-238 52-258 (262)
71 3fmo_B ATP-dependent RNA helic 100.0 1.8E-32 6.3E-37 243.9 21.7 205 37-244 90-299 (300)
72 3jux_A Protein translocase sub 100.0 6E-30 2E-34 242.1 32.4 321 57-388 72-590 (822)
73 3dkp_A Probable ATP-dependent 100.0 1.3E-31 4.5E-36 232.7 19.1 208 38-245 24-243 (245)
74 1fuk_A Eukaryotic initiation f 100.0 3.3E-28 1.1E-32 197.4 18.8 162 251-412 3-164 (165)
75 2hjv_A ATP-dependent RNA helic 100.0 2.9E-27 9.8E-32 191.3 19.9 158 247-405 5-162 (163)
76 2rb4_A ATP-dependent RNA helic 100.0 2.9E-27 9.8E-32 193.8 18.3 160 248-407 4-169 (175)
77 2p6n_A ATP-dependent RNA helic 100.0 1.9E-27 6.6E-32 196.7 17.1 179 231-411 9-188 (191)
78 1c4o_A DNA nucleotide excision 100.0 8.6E-26 2.9E-30 221.2 31.1 117 277-394 438-559 (664)
79 1t5i_A C_terminal domain of A 100.0 4.7E-27 1.6E-31 191.5 18.5 158 250-408 4-162 (172)
80 2jgn_A DBX, DDX3, ATP-dependen 100.0 3.3E-27 1.1E-31 194.6 17.6 164 247-411 15-179 (185)
81 2ipc_A Preprotein translocase 100.0 1.3E-25 4.4E-30 216.6 31.1 317 57-387 76-700 (997)
82 2d7d_A Uvrabc system protein B 99.9 1.9E-25 6.4E-30 218.7 25.6 172 211-392 385-563 (661)
83 3eaq_A Heat resistant RNA depe 99.9 1.2E-25 4E-30 189.7 18.5 145 262-406 15-159 (212)
84 3i32_A Heat resistant RNA depe 99.9 8.8E-25 3E-29 192.7 19.0 154 252-406 3-156 (300)
85 2yjt_D ATP-dependent RNA helic 99.9 7.2E-27 2.5E-31 190.4 0.0 155 251-405 3-157 (170)
86 2vl7_A XPD; helicase, unknown 99.9 5.7E-24 2E-28 204.3 17.1 103 277-385 383-521 (540)
87 3b6e_A Interferon-induced heli 99.9 9.4E-25 3.2E-29 185.9 10.1 164 57-221 29-216 (216)
88 3crv_A XPD/RAD3 related DNA he 99.9 8E-22 2.7E-26 190.2 27.2 311 61-387 3-533 (551)
89 1rif_A DAR protein, DNA helica 99.9 1.2E-22 4.1E-27 179.8 10.2 153 61-225 113-265 (282)
90 3llm_A ATP-dependent RNA helic 99.9 1.2E-20 4E-25 162.1 16.2 171 47-226 47-222 (235)
91 4a15_A XPD helicase, ATP-depen 99.8 2.1E-19 7.1E-24 174.6 22.1 111 270-385 441-584 (620)
92 2fz4_A DNA repair protein RAD2 99.8 3E-20 1E-24 159.3 13.4 138 61-225 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.8 2.4E-18 8.1E-23 149.9 12.8 125 261-385 93-224 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 1.1E-08 3.6E-13 99.5 8.8 146 63-221 151-298 (608)
95 4b3f_X DNA-binding protein smu 98.6 3.6E-08 1.2E-12 96.9 7.0 67 61-130 189-256 (646)
96 2xzl_A ATP-dependent helicase 98.6 5.7E-07 2E-11 89.8 13.4 70 59-130 358-427 (802)
97 2gk6_A Regulator of nonsense t 98.5 3.4E-07 1.2E-11 89.4 11.1 70 59-130 178-247 (624)
98 3e1s_A Exodeoxyribonuclease V, 98.5 7.4E-07 2.5E-11 85.7 12.3 126 62-221 190-315 (574)
99 3upu_A ATP-dependent DNA helic 98.5 6.5E-07 2.2E-11 84.2 11.4 137 56-221 20-164 (459)
100 2wjy_A Regulator of nonsense t 98.5 9E-07 3.1E-11 88.3 12.5 69 60-130 355-423 (800)
101 3lfu_A DNA helicase II; SF1 he 98.3 6.5E-05 2.2E-09 74.0 21.8 70 60-131 8-78 (647)
102 3hgt_A HDA1 complex subunit 3; 98.0 7.5E-05 2.6E-09 65.2 13.3 123 262-389 107-241 (328)
103 2o0j_A Terminase, DNA packagin 97.7 0.00037 1.3E-08 63.1 12.1 71 61-132 163-233 (385)
104 3cpe_A Terminase, DNA packagin 97.5 0.00067 2.3E-08 65.8 11.8 146 61-224 163-315 (592)
105 2j9r_A Thymidine kinase; TK1, 97.4 0.00042 1.5E-08 56.8 7.6 40 76-118 28-67 (214)
106 1xx6_A Thymidine kinase; NESG, 97.4 0.00039 1.3E-08 56.5 7.1 40 75-117 7-46 (191)
107 1uaa_A REP helicase, protein ( 97.4 0.00026 8.8E-09 70.0 6.9 70 61-132 2-72 (673)
108 2b8t_A Thymidine kinase; deoxy 97.3 0.00044 1.5E-08 57.6 7.2 91 76-194 12-102 (223)
109 2orw_A Thymidine kinase; TMTK, 97.3 0.00081 2.8E-08 54.4 8.0 39 76-117 3-41 (184)
110 3vkw_A Replicase large subunit 97.2 0.00098 3.3E-08 61.1 8.6 108 77-221 162-269 (446)
111 2orv_A Thymidine kinase; TP4A 97.2 0.00085 2.9E-08 55.6 7.4 40 76-118 19-58 (234)
112 1pjr_A PCRA; DNA repair, DNA r 97.1 0.00079 2.7E-08 66.9 7.7 70 60-131 10-80 (724)
113 3ec2_A DNA replication protein 97.1 0.0016 5.6E-08 52.4 8.4 32 63-94 16-56 (180)
114 2kjq_A DNAA-related protein; s 97.1 0.00034 1.2E-08 54.4 3.7 19 75-93 35-53 (149)
115 1a5t_A Delta prime, HOLB; zinc 97.1 0.0013 4.6E-08 58.8 8.1 36 62-97 3-45 (334)
116 2chg_A Replication factor C sm 97.1 0.0062 2.1E-07 50.5 11.6 41 180-221 101-141 (226)
117 3e2i_A Thymidine kinase; Zn-bi 97.0 0.00056 1.9E-08 55.9 4.7 40 76-118 28-67 (219)
118 3u4q_A ATP-dependent helicase/ 97.0 0.00096 3.3E-08 70.3 7.6 68 61-130 10-80 (1232)
119 1l8q_A Chromosomal replication 97.0 0.0029 1E-07 56.3 9.5 36 76-114 37-72 (324)
120 1w4r_A Thymidine kinase; type 96.9 0.0026 9E-08 51.2 7.3 38 76-116 20-57 (195)
121 3te6_A Regulatory protein SIR3 96.8 0.0095 3.2E-07 52.4 10.7 40 181-223 132-174 (318)
122 3co5_A Putative two-component 96.7 0.007 2.4E-07 46.5 8.3 20 74-93 25-44 (143)
123 2v1u_A Cell division control p 96.7 0.01 3.6E-07 53.9 10.8 19 76-94 44-62 (387)
124 2z4s_A Chromosomal replication 96.5 0.0083 2.8E-07 55.7 8.8 38 76-114 130-167 (440)
125 3n70_A Transport activator; si 96.5 0.018 6.2E-07 44.2 9.3 39 183-222 78-116 (145)
126 2zpa_A Uncharacterized protein 96.5 0.0057 1.9E-07 59.1 7.5 113 61-223 175-289 (671)
127 1g5t_A COB(I)alamin adenosyltr 96.3 0.017 5.8E-07 46.6 8.5 138 76-228 28-169 (196)
128 3bos_A Putative DNA replicatio 96.3 0.0068 2.3E-07 51.1 6.3 20 75-94 51-70 (242)
129 1d2n_A N-ethylmaleimide-sensit 96.2 0.058 2E-06 46.4 12.2 18 77-94 65-82 (272)
130 3u61_B DNA polymerase accessor 96.2 0.017 5.9E-07 51.2 8.8 40 181-220 105-144 (324)
131 2w58_A DNAI, primosome compone 96.2 0.014 4.7E-07 47.8 7.5 18 77-94 55-72 (202)
132 2qby_B CDC6 homolog 3, cell di 96.1 0.015 5E-07 53.0 8.2 38 184-222 136-174 (384)
133 3syl_A Protein CBBX; photosynt 96.1 0.005 1.7E-07 54.3 4.8 19 76-94 67-85 (309)
134 3kl4_A SRP54, signal recogniti 96.1 0.044 1.5E-06 50.4 10.8 129 77-231 98-232 (433)
135 3h4m_A Proteasome-activating n 96.0 0.019 6.5E-07 49.8 7.9 53 39-93 14-68 (285)
136 1iqp_A RFCS; clamp loader, ext 96.0 0.02 7E-07 50.7 8.3 40 180-220 109-148 (327)
137 1fnn_A CDC6P, cell division co 96.0 0.0083 2.8E-07 54.7 5.7 17 78-94 46-62 (389)
138 3dm5_A SRP54, signal recogniti 95.9 0.1 3.5E-06 48.0 12.3 129 77-231 101-233 (443)
139 1sxj_E Activator 1 40 kDa subu 95.7 0.067 2.3E-06 48.0 10.7 43 180-223 133-175 (354)
140 1sxj_D Activator 1 41 kDa subu 95.6 0.022 7.5E-07 51.1 7.0 39 181-220 133-171 (353)
141 2p65_A Hypothetical protein PF 95.6 0.038 1.3E-06 44.1 7.6 19 76-94 43-61 (187)
142 1sxj_B Activator 1 37 kDa subu 95.5 0.034 1.1E-06 49.1 7.6 38 181-219 107-144 (323)
143 2gno_A DNA polymerase III, gam 95.3 0.055 1.9E-06 47.4 8.3 39 180-219 81-119 (305)
144 3eie_A Vacuolar protein sortin 95.3 0.043 1.5E-06 48.6 7.5 54 38-94 14-69 (322)
145 1njg_A DNA polymerase III subu 95.3 0.14 4.8E-06 42.7 10.5 39 181-220 126-164 (250)
146 2qby_A CDC6 homolog 1, cell di 95.2 0.082 2.8E-06 47.9 9.4 19 76-94 45-63 (386)
147 1sxj_C Activator 1 40 kDa subu 95.0 0.088 3E-06 46.9 8.9 39 180-219 109-147 (340)
148 1gm5_A RECG; helicase, replica 94.6 0.078 2.7E-06 52.8 7.9 79 278-356 417-500 (780)
149 2chq_A Replication factor C sm 94.6 0.024 8.1E-07 50.0 3.8 17 78-94 40-56 (319)
150 1sxj_A Activator 1 95 kDa subu 94.5 0.077 2.6E-06 50.4 7.5 42 180-223 147-190 (516)
151 1jr3_A DNA polymerase III subu 94.5 0.12 4.1E-06 46.6 8.5 39 180-219 118-156 (373)
152 3pvs_A Replication-associated 94.5 0.027 9.3E-07 52.3 4.1 18 77-94 51-68 (447)
153 4a1f_A DNAB helicase, replicat 94.3 0.041 1.4E-06 48.8 4.6 51 73-127 43-93 (338)
154 1n0w_A DNA repair protein RAD5 94.2 0.45 1.5E-05 39.7 10.9 43 74-116 22-67 (243)
155 2r6a_A DNAB helicase, replicat 93.9 0.15 5.1E-06 47.5 7.9 42 73-116 200-241 (454)
156 1hqc_A RUVB; extended AAA-ATPa 93.8 0.15 5.2E-06 44.9 7.5 19 76-94 38-56 (324)
157 2q6t_A DNAB replication FORK h 93.7 0.1 3.6E-06 48.4 6.4 52 73-127 197-248 (444)
158 1w5s_A Origin recognition comp 93.4 0.11 3.6E-06 47.7 6.0 19 76-94 50-70 (412)
159 3oiy_A Reverse gyrase helicase 93.3 0.21 7.1E-06 45.8 7.7 79 277-355 63-148 (414)
160 3hu3_A Transitional endoplasmi 93.2 0.24 8.1E-06 46.5 7.9 43 182-224 298-350 (489)
161 3pfi_A Holliday junction ATP-d 93.1 0.15 5.2E-06 45.3 6.3 18 77-94 56-73 (338)
162 1t6n_A Probable ATP-dependent 92.9 0.95 3.3E-05 37.1 10.6 104 279-385 83-199 (220)
163 1vma_A Cell division protein F 92.8 1.7 5.9E-05 37.8 12.4 19 77-95 105-123 (306)
164 1ls1_A Signal recognition part 92.6 2.7 9.2E-05 36.4 13.4 37 75-114 97-133 (295)
165 3ber_A Probable ATP-dependent 92.6 0.93 3.2E-05 38.1 10.2 112 277-395 110-236 (249)
166 3hjh_A Transcription-repair-co 91.9 0.79 2.7E-05 42.8 9.6 77 266-355 371-447 (483)
167 2rb4_A ATP-dependent RNA helic 91.3 1 3.6E-05 35.4 8.6 74 106-189 33-110 (175)
168 2fna_A Conserved hypothetical 90.9 7.9 0.00027 34.0 15.4 53 165-222 124-179 (357)
169 2hjv_A ATP-dependent RNA helic 90.8 1.1 3.9E-05 34.7 8.2 73 108-190 36-112 (163)
170 4b4t_M 26S protease regulatory 90.7 0.091 3.1E-06 48.2 1.9 55 36-93 175-232 (434)
171 3b85_A Phosphate starvation-in 90.3 0.32 1.1E-05 39.8 4.7 36 58-93 4-39 (208)
172 1fuk_A Eukaryotic initiation f 90.2 1.6 5.4E-05 33.9 8.7 74 107-190 30-107 (165)
173 2eyq_A TRCF, transcription-rep 89.9 1 3.5E-05 47.1 9.2 78 277-354 651-733 (1151)
174 2qgz_A Helicase loader, putati 89.9 0.29 9.8E-06 42.9 4.4 20 76-95 152-171 (308)
175 1t5i_A C_terminal domain of A 89.6 3.7 0.00013 32.1 10.5 75 107-191 31-109 (172)
176 2dr3_A UPF0273 protein PH0284; 89.5 0.26 8.9E-06 41.3 3.8 51 74-128 21-71 (247)
177 4ddu_A Reverse gyrase; topoiso 89.4 0.68 2.3E-05 48.2 7.4 79 277-355 120-205 (1104)
178 2oxc_A Probable ATP-dependent 89.3 0.62 2.1E-05 38.6 5.9 73 277-354 91-174 (230)
179 1vec_A ATP-dependent RNA helic 89.1 1.6 5.5E-05 35.2 8.2 117 278-398 71-200 (206)
180 4b4t_J 26S protease regulatory 89.1 0.18 6.1E-06 45.7 2.5 54 37-93 143-199 (405)
181 3eaq_A Heat resistant RNA depe 89.0 1.4 4.9E-05 35.9 7.8 71 107-187 31-105 (212)
182 3pxi_A Negative regulator of g 88.9 0.23 7.9E-06 49.6 3.4 17 78-94 523-539 (758)
183 3fe2_A Probable ATP-dependent 88.6 2.3 7.7E-05 35.4 9.0 112 278-396 102-227 (242)
184 2p6n_A ATP-dependent RNA helic 88.4 2.9 9.9E-05 33.4 9.1 72 108-189 55-130 (191)
185 1oyw_A RECQ helicase, ATP-depe 88.4 1 3.5E-05 42.7 7.3 59 278-336 65-123 (523)
186 3e70_C DPA, signal recognition 88.3 3.3 0.00011 36.4 10.1 53 181-233 211-264 (328)
187 2gxq_A Heat resistant RNA depe 88.0 4.7 0.00016 32.3 10.4 115 278-396 72-195 (207)
188 4b4t_H 26S protease regulatory 87.9 0.2 6.9E-06 46.1 2.0 55 36-93 203-260 (467)
189 3cf0_A Transitional endoplasmi 87.6 0.2 6.8E-06 43.8 1.8 53 39-94 12-67 (301)
190 4b4t_L 26S protease subunit RP 87.4 0.18 6.1E-06 46.4 1.3 55 36-93 175-232 (437)
191 2jgn_A DBX, DDX3, ATP-dependen 87.3 2.1 7E-05 34.1 7.6 90 86-189 29-122 (185)
192 3u4q_B ATP-dependent helicase/ 87.1 0.32 1.1E-05 51.1 3.3 48 80-128 5-52 (1166)
193 2oap_1 GSPE-2, type II secreti 87.0 0.59 2E-05 44.0 4.7 28 73-101 257-284 (511)
194 2ffh_A Protein (FFH); SRP54, s 86.9 14 0.00047 33.7 13.6 36 76-114 98-133 (425)
195 1p9r_A General secretion pathw 86.8 0.84 2.9E-05 41.8 5.5 47 65-114 154-202 (418)
196 2ius_A DNA translocase FTSK; n 86.6 0.71 2.4E-05 43.3 5.0 26 73-98 164-189 (512)
197 2v1x_A ATP-dependent DNA helic 86.6 1.1 3.8E-05 43.1 6.5 59 278-336 84-144 (591)
198 2l82_A Designed protein OR32; 86.6 4.4 0.00015 28.2 7.6 115 281-398 5-126 (162)
199 4b4t_K 26S protease regulatory 86.5 0.23 7.9E-06 45.5 1.6 55 36-93 166-223 (428)
200 2w0m_A SSO2452; RECA, SSPF, un 86.4 0.57 1.9E-05 38.7 3.9 40 73-115 20-59 (235)
201 2qmh_A HPR kinase/phosphorylas 86.3 0.43 1.5E-05 38.5 2.9 19 76-94 34-52 (205)
202 1sky_E F1-ATPase, F1-ATP synth 86.3 8.3 0.00029 35.6 11.8 32 68-99 143-174 (473)
203 2eyu_A Twitching motility prot 86.3 0.39 1.3E-05 40.9 2.8 21 73-93 22-42 (261)
204 1e9r_A Conjugal transfer prote 86.2 0.63 2.2E-05 43.0 4.4 44 75-121 52-95 (437)
205 3hws_A ATP-dependent CLP prote 86.1 0.85 2.9E-05 40.9 5.1 20 75-94 50-69 (363)
206 2i4i_A ATP-dependent RNA helic 86.0 4.4 0.00015 36.7 10.1 72 106-187 275-350 (417)
207 3bh0_A DNAB-like replicative h 86.0 0.78 2.7E-05 40.2 4.7 53 73-129 65-117 (315)
208 2cvh_A DNA repair and recombin 85.9 0.49 1.7E-05 38.8 3.2 36 74-115 18-53 (220)
209 1w36_B RECB, exodeoxyribonucle 85.9 1.2 4.2E-05 46.8 6.9 53 78-130 18-79 (1180)
210 3bor_A Human initiation factor 85.9 1.3 4.5E-05 36.8 5.9 75 277-354 97-181 (237)
211 2zts_A Putative uncharacterize 85.9 0.41 1.4E-05 40.1 2.8 51 76-129 30-80 (251)
212 2i1q_A DNA repair and recombin 85.8 0.95 3.2E-05 39.8 5.2 55 76-130 98-166 (322)
213 2pl3_A Probable ATP-dependent 85.7 1.8 6.2E-05 35.8 6.7 115 278-397 97-223 (236)
214 2l8b_A Protein TRAI, DNA helic 85.6 0.53 1.8E-05 37.2 3.0 59 62-122 35-95 (189)
215 2j37_W Signal recognition part 85.6 13 0.00045 34.8 13.0 35 78-115 103-137 (504)
216 2x8a_A Nuclear valosin-contain 85.5 0.23 7.8E-06 42.7 1.0 54 37-93 5-61 (274)
217 1xti_A Probable ATP-dependent 85.5 8.1 0.00028 34.5 11.5 105 278-385 76-193 (391)
218 1kgd_A CASK, peripheral plasma 85.4 0.5 1.7E-05 37.5 2.9 20 75-94 4-23 (180)
219 1jbk_A CLPB protein; beta barr 85.2 0.5 1.7E-05 37.5 2.9 19 76-94 43-61 (195)
220 3nbx_X ATPase RAVA; AAA+ ATPas 85.1 0.94 3.2E-05 42.5 5.0 31 63-93 28-58 (500)
221 2qor_A Guanylate kinase; phosp 85.0 0.4 1.4E-05 39.0 2.2 23 72-94 8-30 (204)
222 2bjv_A PSP operon transcriptio 85.0 0.63 2.1E-05 39.6 3.6 19 75-93 28-46 (265)
223 3vaa_A Shikimate kinase, SK; s 84.8 0.55 1.9E-05 38.0 2.9 20 75-94 24-43 (199)
224 2r8r_A Sensor protein; KDPD, P 84.7 0.91 3.1E-05 37.4 4.2 27 78-104 8-34 (228)
225 3a8t_A Adenylate isopentenyltr 84.6 0.51 1.7E-05 41.6 2.8 19 76-94 40-58 (339)
226 3i5x_A ATP-dependent RNA helic 84.5 9.2 0.00031 36.4 11.9 89 96-191 328-420 (563)
227 2z43_A DNA repair and recombin 84.5 1.2 4E-05 39.3 5.1 54 76-129 107-164 (324)
228 4ag6_A VIRB4 ATPase, type IV s 84.4 0.99 3.4E-05 41.0 4.8 41 75-118 34-74 (392)
229 1ofh_A ATP-dependent HSL prote 84.4 0.99 3.4E-05 39.2 4.7 19 76-94 50-68 (310)
230 4b4t_I 26S protease regulatory 84.3 0.37 1.3E-05 43.9 1.8 55 36-93 176-233 (437)
231 1zp6_A Hypothetical protein AT 84.3 0.35 1.2E-05 38.7 1.5 21 73-93 6-26 (191)
232 2r44_A Uncharacterized protein 83.9 0.36 1.2E-05 42.7 1.6 24 70-93 40-63 (331)
233 2j41_A Guanylate kinase; GMP, 83.7 0.5 1.7E-05 38.3 2.3 21 74-94 4-24 (207)
234 2iut_A DNA translocase FTSK; n 83.6 1.2 4.3E-05 42.2 5.1 41 76-116 214-255 (574)
235 1lvg_A Guanylate kinase, GMP k 83.6 0.49 1.7E-05 38.3 2.1 19 75-93 3-21 (198)
236 3hr8_A Protein RECA; alpha and 83.6 0.72 2.4E-05 41.1 3.3 41 76-119 61-101 (356)
237 2gza_A Type IV secretion syste 83.5 0.57 1.9E-05 42.0 2.7 21 73-93 172-192 (361)
238 3iij_A Coilin-interacting nucl 83.5 0.54 1.8E-05 37.2 2.3 20 75-94 10-29 (180)
239 3tau_A Guanylate kinase, GMP k 83.5 0.67 2.3E-05 37.8 2.9 20 75-94 7-26 (208)
240 1qhx_A CPT, protein (chloramph 83.5 0.52 1.8E-05 37.2 2.2 18 76-93 3-20 (178)
241 1u94_A RECA protein, recombina 83.4 0.99 3.4E-05 40.3 4.2 40 75-117 62-101 (356)
242 3trf_A Shikimate kinase, SK; a 83.3 0.68 2.3E-05 36.7 2.9 19 76-94 5-23 (185)
243 2zr9_A Protein RECA, recombina 83.2 0.9 3.1E-05 40.5 3.8 40 75-117 60-99 (349)
244 1u0j_A DNA replication protein 83.2 1.9 6.3E-05 36.6 5.5 44 49-94 74-122 (267)
245 1tue_A Replication protein E1; 83.0 1.6 5.6E-05 35.3 4.9 44 48-93 28-75 (212)
246 2r2a_A Uncharacterized protein 82.9 0.9 3.1E-05 36.8 3.4 22 78-99 7-28 (199)
247 1wrb_A DJVLGB; RNA helicase, D 82.9 7.3 0.00025 32.5 9.4 113 279-395 101-228 (253)
248 3lw7_A Adenylate kinase relate 82.8 0.51 1.8E-05 36.9 1.9 17 78-94 3-19 (179)
249 1y63_A LMAJ004144AAA protein; 82.8 0.59 2E-05 37.2 2.3 20 75-94 9-28 (184)
250 3sqw_A ATP-dependent RNA helic 82.8 12 0.0004 35.8 11.9 80 105-191 286-369 (579)
251 1xwi_A SKD1 protein; VPS4B, AA 82.7 0.44 1.5E-05 42.0 1.6 54 38-94 8-63 (322)
252 3pey_A ATP-dependent RNA helic 82.6 7.9 0.00027 34.6 10.1 76 106-191 242-321 (395)
253 3b9p_A CG5977-PA, isoform A; A 82.6 0.56 1.9E-05 40.6 2.3 19 76-94 54-72 (297)
254 1v5w_A DMC1, meiotic recombina 82.5 1.3 4.3E-05 39.4 4.6 42 76-117 122-166 (343)
255 3iuy_A Probable ATP-dependent 82.4 2.7 9.1E-05 34.6 6.3 74 277-354 93-175 (228)
256 4akg_A Glutathione S-transfera 82.3 2.2 7.7E-05 48.4 7.2 47 48-95 892-942 (2695)
257 3exa_A TRNA delta(2)-isopenten 82.2 0.73 2.5E-05 40.1 2.7 18 77-94 4-21 (322)
258 1kag_A SKI, shikimate kinase I 82.1 0.64 2.2E-05 36.4 2.3 18 76-93 4-21 (173)
259 2qz4_A Paraplegin; AAA+, SPG7, 82.1 0.77 2.6E-05 38.8 2.9 19 76-94 39-57 (262)
260 4gp7_A Metallophosphoesterase; 82.1 0.54 1.8E-05 37.0 1.8 21 74-94 7-27 (171)
261 3tr0_A Guanylate kinase, GMP k 82.0 0.64 2.2E-05 37.6 2.3 19 75-93 6-24 (205)
262 2ewv_A Twitching motility prot 82.0 0.71 2.4E-05 41.6 2.7 21 73-93 133-153 (372)
263 3io5_A Recombination and repai 82.0 0.72 2.5E-05 40.2 2.6 42 78-120 30-71 (333)
264 2px0_A Flagellar biosynthesis 82.0 1.2 4.1E-05 38.6 4.1 22 76-97 105-126 (296)
265 3vkg_A Dynein heavy chain, cyt 81.7 3.4 0.00012 47.6 8.3 46 48-94 875-924 (3245)
266 2pt7_A CAG-ALFA; ATPase, prote 81.7 0.53 1.8E-05 41.6 1.7 21 73-93 168-188 (330)
267 3i32_A Heat resistant RNA depe 81.6 3.4 0.00012 35.8 6.9 75 107-191 28-106 (300)
268 3jvv_A Twitching mobility prot 81.5 0.77 2.6E-05 41.0 2.7 19 75-93 122-140 (356)
269 1z6g_A Guanylate kinase; struc 81.3 0.74 2.5E-05 37.9 2.4 21 73-93 20-40 (218)
270 3bgw_A DNAB-like replicative h 81.2 1.3 4.4E-05 40.9 4.2 41 73-116 194-234 (444)
271 1lv7_A FTSH; alpha/beta domain 81.2 0.64 2.2E-05 39.3 2.1 18 76-93 45-62 (257)
272 1kht_A Adenylate kinase; phosp 81.2 0.7 2.4E-05 36.8 2.2 19 76-94 3-21 (192)
273 1qde_A EIF4A, translation init 81.1 1.7 5.9E-05 35.6 4.7 73 277-354 81-163 (224)
274 1um8_A ATP-dependent CLP prote 80.8 2.6 9E-05 37.8 6.1 19 76-94 72-90 (376)
275 3ney_A 55 kDa erythrocyte memb 80.7 1 3.5E-05 36.3 2.9 20 75-94 18-37 (197)
276 3a00_A Guanylate kinase, GMP k 80.7 0.79 2.7E-05 36.5 2.3 17 77-93 2-18 (186)
277 1ojl_A Transcriptional regulat 80.6 1.1 3.7E-05 39.1 3.3 19 75-93 24-42 (304)
278 3kb2_A SPBC2 prophage-derived 80.6 0.7 2.4E-05 36.1 2.0 17 78-94 3-19 (173)
279 1g8p_A Magnesium-chelatase 38 80.6 0.69 2.4E-05 41.1 2.1 19 76-94 45-63 (350)
280 2ehv_A Hypothetical protein PH 80.5 1.4 4.6E-05 36.9 3.9 24 73-96 27-50 (251)
281 3t15_A Ribulose bisphosphate c 80.5 0.6 2.1E-05 40.5 1.7 17 77-93 37-53 (293)
282 2ze6_A Isopentenyl transferase 80.5 0.86 2.9E-05 38.5 2.6 17 78-94 3-19 (253)
283 3foz_A TRNA delta(2)-isopenten 80.5 0.86 2.9E-05 39.6 2.6 17 78-94 12-28 (316)
284 1knq_A Gluconate kinase; ALFA/ 80.5 0.73 2.5E-05 36.2 2.0 18 76-93 8-25 (175)
285 3cm0_A Adenylate kinase; ATP-b 80.1 0.63 2.1E-05 37.0 1.6 19 76-94 4-22 (186)
286 1xp8_A RECA protein, recombina 80.1 1.3 4.6E-05 39.6 3.8 41 75-118 73-113 (366)
287 4eun_A Thermoresistant glucoki 80.1 0.84 2.9E-05 36.9 2.3 19 75-93 28-46 (200)
288 1ly1_A Polynucleotide kinase; 79.9 0.76 2.6E-05 36.2 2.0 17 78-94 4-20 (181)
289 1zuh_A Shikimate kinase; alpha 79.8 0.81 2.8E-05 35.7 2.1 18 77-94 8-25 (168)
290 1znw_A Guanylate kinase, GMP k 79.7 0.88 3E-05 37.0 2.3 22 72-93 16-37 (207)
291 3lnc_A Guanylate kinase, GMP k 79.6 0.82 2.8E-05 37.9 2.1 22 72-93 23-44 (231)
292 3uk6_A RUVB-like 2; hexameric 79.1 0.92 3.1E-05 40.6 2.5 25 76-101 70-94 (368)
293 3ice_A Transcription terminati 79.1 1.6 5.3E-05 39.3 3.8 23 72-94 170-192 (422)
294 1nlf_A Regulatory protein REPA 78.8 2.8 9.5E-05 35.8 5.4 27 72-98 26-52 (279)
295 1wp9_A ATP-dependent RNA helic 78.8 23 0.00078 32.4 12.2 116 277-398 51-181 (494)
296 3fmo_B ATP-dependent RNA helic 78.5 2.4 8.1E-05 36.8 4.9 111 279-396 163-287 (300)
297 1s96_A Guanylate kinase, GMP k 78.2 1 3.5E-05 37.1 2.3 21 73-93 13-33 (219)
298 1c9k_A COBU, adenosylcobinamid 78.2 1.2 4E-05 35.3 2.5 44 79-129 2-45 (180)
299 3ly5_A ATP-dependent RNA helic 78.0 7 0.00024 32.9 7.6 73 278-354 126-209 (262)
300 3crm_A TRNA delta(2)-isopenten 77.9 1.1 3.9E-05 39.2 2.6 17 78-94 7-23 (323)
301 1cr0_A DNA primase/helicase; R 77.9 1.8 6.3E-05 37.3 4.0 41 73-115 32-72 (296)
302 1s2m_A Putative ATP-dependent 77.9 9 0.00031 34.4 8.8 73 107-189 258-334 (400)
303 3c8u_A Fructokinase; YP_612366 77.6 1.1 3.8E-05 36.4 2.3 19 75-93 21-39 (208)
304 1tev_A UMP-CMP kinase; ploop, 77.5 0.99 3.4E-05 36.0 2.0 19 76-94 3-21 (196)
305 3umf_A Adenylate kinase; rossm 77.4 1.3 4.4E-05 36.4 2.6 22 73-94 26-47 (217)
306 1zu4_A FTSY; GTPase, signal re 77.4 2.2 7.5E-05 37.4 4.3 36 76-114 105-140 (320)
307 2rhm_A Putative kinase; P-loop 77.3 0.92 3.2E-05 36.2 1.7 19 76-94 5-23 (193)
308 2qp9_X Vacuolar protein sortin 77.2 1.3 4.6E-05 39.5 2.9 19 76-94 84-102 (355)
309 2bdt_A BH3686; alpha-beta prot 77.0 0.87 3E-05 36.3 1.5 18 77-94 3-20 (189)
310 1ixz_A ATP-dependent metallopr 76.9 1.1 3.8E-05 37.7 2.2 17 77-93 50-66 (254)
311 2qt1_A Nicotinamide riboside k 76.9 1 3.5E-05 36.5 1.9 24 70-93 15-38 (207)
312 2j0s_A ATP-dependent RNA helic 76.8 8.5 0.00029 34.7 8.4 72 108-189 277-352 (410)
313 4fcw_A Chaperone protein CLPB; 76.8 1 3.4E-05 39.2 2.0 18 77-94 48-65 (311)
314 3fht_A ATP-dependent RNA helic 76.8 9.4 0.00032 34.4 8.6 74 107-190 266-343 (412)
315 2v54_A DTMP kinase, thymidylat 76.7 1.2 4.1E-05 35.9 2.3 20 75-94 3-22 (204)
316 3d3q_A TRNA delta(2)-isopenten 76.5 1.3 4.6E-05 39.0 2.6 17 78-94 9-25 (340)
317 2c9o_A RUVB-like 1; hexameric 76.5 1.3 4.6E-05 41.0 2.8 19 76-94 63-81 (456)
318 2c95_A Adenylate kinase 1; tra 76.4 1.1 3.8E-05 35.8 2.0 20 75-94 8-27 (196)
319 2d7d_A Uvrabc system protein B 76.4 17 0.00056 35.5 10.6 77 107-193 445-525 (661)
320 4dzz_A Plasmid partitioning pr 76.3 5.3 0.00018 32.0 6.2 32 158-192 55-86 (206)
321 1via_A Shikimate kinase; struc 76.3 1.2 4.1E-05 35.0 2.1 17 78-94 6-22 (175)
322 3uie_A Adenylyl-sulfate kinase 76.2 1.5 5.1E-05 35.3 2.8 31 62-93 12-42 (200)
323 1m7g_A Adenylylsulfate kinase; 76.2 1.5 5E-05 35.7 2.7 31 63-94 13-43 (211)
324 1aky_A Adenylate kinase; ATP:A 76.1 1.3 4.3E-05 36.4 2.3 19 76-94 4-22 (220)
325 3fb4_A Adenylate kinase; psych 76.1 1.1 3.8E-05 36.5 2.0 17 78-94 2-18 (216)
326 2zan_A Vacuolar protein sortin 76.1 1.3 4.6E-05 40.9 2.7 19 76-94 167-185 (444)
327 3t61_A Gluconokinase; PSI-biol 76.1 1.1 3.9E-05 36.1 2.0 18 77-94 19-36 (202)
328 3d8b_A Fidgetin-like protein 1 76.0 1.5 5.1E-05 39.2 2.9 19 76-94 117-135 (357)
329 1gvn_B Zeta; postsegregational 76.0 1.3 4.3E-05 38.3 2.3 19 76-94 33-51 (287)
330 2db3_A ATP-dependent RNA helic 75.8 14 0.0005 33.7 9.7 70 109-188 302-375 (434)
331 1rj9_A FTSY, signal recognitio 75.5 2.9 0.0001 36.3 4.6 18 76-93 102-119 (304)
332 3dl0_A Adenylate kinase; phosp 75.5 1.2 4.1E-05 36.4 2.0 17 78-94 2-18 (216)
333 1pzn_A RAD51, DNA repair and r 75.3 2.1 7.1E-05 38.1 3.6 41 76-116 131-174 (349)
334 2yvu_A Probable adenylyl-sulfa 75.3 2.9 0.0001 33.0 4.2 20 75-94 12-31 (186)
335 3l0o_A Transcription terminati 75.3 2 6.9E-05 38.6 3.4 31 70-101 169-199 (427)
336 2pez_A Bifunctional 3'-phospho 75.3 1.3 4.4E-05 34.9 2.1 19 75-93 4-22 (179)
337 2r62_A Cell division protease 75.2 0.85 2.9E-05 38.8 1.0 19 76-94 44-62 (268)
338 3b9q_A Chloroplast SRP recepto 75.2 2.6 8.9E-05 36.6 4.1 19 75-93 99-117 (302)
339 1ex7_A Guanylate kinase; subst 75.1 1.4 4.6E-05 35.2 2.1 17 77-93 2-18 (186)
340 2iyv_A Shikimate kinase, SK; t 75.1 1.4 4.9E-05 34.8 2.3 18 77-94 3-20 (184)
341 1ye8_A Protein THEP1, hypothet 75.0 1.3 4.6E-05 35.0 2.1 16 78-93 2-17 (178)
342 3vfd_A Spastin; ATPase, microt 75.0 1.3 4.5E-05 40.1 2.3 19 76-94 148-166 (389)
343 1e6c_A Shikimate kinase; phosp 75.0 1.4 4.7E-05 34.4 2.1 17 78-94 4-20 (173)
344 3f9v_A Minichromosome maintena 74.9 1.4 4.9E-05 42.4 2.6 16 78-93 329-344 (595)
345 3cf2_A TER ATPase, transitiona 74.8 2.9 0.0001 41.6 4.8 54 37-93 472-528 (806)
346 2cdn_A Adenylate kinase; phosp 74.7 1.5 5.1E-05 35.3 2.3 18 77-94 21-38 (201)
347 3nwj_A ATSK2; P loop, shikimat 74.5 2 7E-05 36.1 3.2 20 75-94 47-66 (250)
348 2vli_A Antibiotic resistance p 74.5 1.3 4.4E-05 35.0 1.9 19 76-94 5-23 (183)
349 1yks_A Genome polyprotein [con 74.4 3.6 0.00012 37.9 5.2 68 108-186 178-245 (440)
350 2plr_A DTMP kinase, probable t 74.4 1.4 4.7E-05 35.7 2.1 19 76-94 4-22 (213)
351 2v6i_A RNA helicase; membrane, 74.2 4.2 0.00014 37.4 5.5 67 108-185 172-238 (431)
352 4a74_A DNA repair and recombin 74.1 1.4 4.8E-05 36.3 2.1 24 73-96 22-45 (231)
353 2v9p_A Replication protein E1; 74.0 1.9 6.7E-05 37.4 3.0 21 73-93 123-143 (305)
354 1zd8_A GTP:AMP phosphotransfer 73.9 1.3 4.5E-05 36.5 1.8 19 76-94 7-25 (227)
355 2v3c_C SRP54, signal recogniti 73.8 2.6 8.8E-05 38.7 3.9 35 77-114 100-134 (432)
356 3sr0_A Adenylate kinase; phosp 73.7 1.8 6.3E-05 35.1 2.6 18 78-95 2-19 (206)
357 3tif_A Uncharacterized ABC tra 73.5 1.5 5.2E-05 36.5 2.1 21 73-93 28-48 (235)
358 3asz_A Uridine kinase; cytidin 73.4 1.3 4.5E-05 35.9 1.7 19 75-93 5-23 (211)
359 1f2t_A RAD50 ABC-ATPase; DNA d 73.4 1.5 5.2E-05 33.5 2.0 16 78-93 25-40 (149)
360 1cke_A CK, MSSA, protein (cyti 73.3 1.6 5.3E-05 35.9 2.2 18 77-94 6-23 (227)
361 1in4_A RUVB, holliday junction 73.2 1.9 6.4E-05 38.1 2.8 17 77-93 52-68 (334)
362 3tlx_A Adenylate kinase 2; str 73.1 2.4 8.1E-05 35.5 3.3 20 75-94 28-47 (243)
363 1nks_A Adenylate kinase; therm 73.0 1.3 4.4E-05 35.2 1.6 17 78-94 3-19 (194)
364 1zak_A Adenylate kinase; ATP:A 73.0 1.5 5.1E-05 36.0 2.0 19 76-94 5-23 (222)
365 2bwj_A Adenylate kinase 5; pho 73.0 1.4 4.8E-05 35.3 1.8 20 75-94 11-30 (199)
366 1jjv_A Dephospho-COA kinase; P 72.6 1.5 5.3E-05 35.4 2.0 17 78-94 4-20 (206)
367 1q57_A DNA primase/helicase; d 72.6 2.1 7E-05 40.4 3.1 52 73-127 239-290 (503)
368 1iy2_A ATP-dependent metallopr 72.6 1.6 5.3E-05 37.4 2.1 54 37-93 35-90 (278)
369 3eph_A TRNA isopentenyltransfe 72.6 1.6 5.6E-05 39.4 2.2 18 78-95 4-21 (409)
370 2wv9_A Flavivirin protease NS2 72.4 6.4 0.00022 38.5 6.6 69 107-186 410-478 (673)
371 2wwf_A Thymidilate kinase, put 72.2 1.6 5.4E-05 35.4 1.9 20 75-94 9-28 (212)
372 2cbz_A Multidrug resistance-as 72.2 1.7 5.8E-05 36.3 2.1 21 73-93 28-48 (237)
373 2jaq_A Deoxyguanosine kinase; 72.2 1.7 5.7E-05 35.0 2.1 17 78-94 2-18 (205)
374 2pt5_A Shikimate kinase, SK; a 72.1 1.7 5.7E-05 33.7 2.0 17 78-94 2-18 (168)
375 1htw_A HI0065; nucleotide-bind 72.0 1.7 5.9E-05 33.6 2.0 20 74-93 31-50 (158)
376 3cmu_A Protein RECA, recombina 71.8 3.1 0.00011 45.8 4.4 41 76-119 1427-1467(2050)
377 1j8m_F SRP54, signal recogniti 71.8 3.9 0.00013 35.4 4.4 36 76-114 98-133 (297)
378 2vhj_A Ntpase P4, P4; non- hyd 71.7 2 6.8E-05 37.6 2.5 24 75-98 122-145 (331)
379 1qf9_A UMP/CMP kinase, protein 71.6 1.5 5.1E-05 34.9 1.6 18 77-94 7-24 (194)
380 1gku_B Reverse gyrase, TOP-RG; 71.6 5.5 0.00019 41.3 6.2 76 277-354 98-183 (1054)
381 2jlq_A Serine protease subunit 71.5 8.4 0.00029 35.5 6.9 68 108-186 189-256 (451)
382 1ak2_A Adenylate kinase isoenz 71.4 2.4 8.4E-05 35.0 3.0 19 76-94 16-34 (233)
383 1ukz_A Uridylate kinase; trans 71.4 1.7 5.9E-05 34.9 2.0 17 77-93 16-32 (203)
384 1nn5_A Similar to deoxythymidy 71.3 1.7 5.9E-05 35.3 2.0 20 75-94 8-27 (215)
385 2p5t_B PEZT; postsegregational 71.3 1.5 5.1E-05 37.0 1.6 19 76-94 32-50 (253)
386 2og2_A Putative signal recogni 71.0 3.6 0.00012 36.6 4.1 18 76-93 157-174 (359)
387 1sgw_A Putative ABC transporte 70.9 1.9 6.4E-05 35.3 2.1 21 73-93 32-52 (214)
388 1e4v_A Adenylate kinase; trans 70.9 1.6 5.3E-05 35.7 1.6 17 78-94 2-18 (214)
389 2i3b_A HCR-ntpase, human cance 70.6 2.7 9.1E-05 33.6 2.9 41 179-222 103-145 (189)
390 2z0h_A DTMP kinase, thymidylat 70.6 1.9 6.4E-05 34.5 2.0 17 79-95 3-19 (197)
391 3be4_A Adenylate kinase; malar 70.5 1.8 6.1E-05 35.4 1.9 19 76-94 5-23 (217)
392 3pxg_A Negative regulator of g 70.5 3.1 0.00011 38.7 3.7 19 76-94 201-219 (468)
393 2pbr_A DTMP kinase, thymidylat 70.4 1.9 6.4E-05 34.3 2.0 17 78-94 2-18 (195)
394 2bbw_A Adenylate kinase 4, AK4 70.3 2 6.9E-05 35.9 2.2 18 76-93 27-44 (246)
395 2if2_A Dephospho-COA kinase; a 70.3 1.7 5.8E-05 35.0 1.7 16 78-93 3-18 (204)
396 3nwn_A Kinesin-like protein KI 70.1 2.3 7.8E-05 37.9 2.6 24 71-94 98-123 (359)
397 3lda_A DNA repair protein RAD5 69.9 3.5 0.00012 37.4 3.8 41 76-116 178-221 (400)
398 2xxa_A Signal recognition part 69.8 3.7 0.00013 37.7 4.0 36 77-114 101-136 (433)
399 2whx_A Serine protease/ntpase/ 69.7 13 0.00043 36.0 7.9 68 108-186 356-423 (618)
400 3gfo_A Cobalt import ATP-bindi 69.6 2 6.8E-05 36.7 2.0 20 74-93 32-51 (275)
401 1xjc_A MOBB protein homolog; s 69.6 4.9 0.00017 31.4 4.1 17 78-94 6-22 (169)
402 2pze_A Cystic fibrosis transme 69.5 2 7E-05 35.5 2.0 21 73-93 31-51 (229)
403 2ff7_A Alpha-hemolysin translo 69.4 2.1 7E-05 36.0 2.0 21 73-93 32-52 (247)
404 4e22_A Cytidylate kinase; P-lo 69.4 2.2 7.6E-05 35.9 2.3 19 75-93 26-44 (252)
405 3a4m_A L-seryl-tRNA(SEC) kinas 69.4 2 6.8E-05 36.4 2.0 18 77-94 5-22 (260)
406 1g41_A Heat shock protein HSLU 69.3 2 7E-05 39.4 2.1 18 76-93 50-67 (444)
407 1bg2_A Kinesin; motor protein, 69.2 2.8 9.7E-05 36.7 2.9 23 72-94 72-96 (325)
408 2ghi_A Transport protein; mult 69.2 2.1 7.3E-05 36.2 2.1 21 73-93 43-63 (260)
409 1mv5_A LMRA, multidrug resista 69.0 1.9 6.5E-05 36.1 1.8 21 73-93 25-45 (243)
410 2xb4_A Adenylate kinase; ATP-b 68.9 2.1 7E-05 35.3 1.9 17 78-94 2-18 (223)
411 2ce7_A Cell division protein F 68.8 2.1 7.1E-05 39.9 2.1 17 77-93 50-66 (476)
412 4g1u_C Hemin import ATP-bindin 68.6 2 7E-05 36.5 1.9 20 74-93 35-54 (266)
413 1hv8_A Putative ATP-dependent 68.5 14 0.00047 32.5 7.5 75 106-190 237-315 (367)
414 3tqc_A Pantothenate kinase; bi 68.5 6.9 0.00024 34.2 5.3 16 78-93 94-109 (321)
415 3tqf_A HPR(Ser) kinase; transf 68.2 2.8 9.4E-05 32.9 2.3 23 75-97 15-37 (181)
416 1c4o_A DNA nucleotide excision 68.2 29 0.001 33.8 10.2 76 107-192 439-518 (664)
417 2grj_A Dephospho-COA kinase; T 68.0 2.3 7.9E-05 34.1 2.0 17 78-94 14-30 (192)
418 3qf7_A RAD50; ABC-ATPase, ATPa 67.9 2.1 7.3E-05 38.3 2.0 16 78-93 25-40 (365)
419 1g6h_A High-affinity branched- 67.8 2.3 7.9E-05 35.9 2.0 20 74-93 31-50 (257)
420 2pcj_A ABC transporter, lipopr 67.7 1.9 6.6E-05 35.5 1.5 20 74-93 28-47 (224)
421 1ji0_A ABC transporter; ATP bi 67.7 2.3 8E-05 35.4 2.0 20 74-93 30-49 (240)
422 1goj_A Kinesin, kinesin heavy 67.6 3.2 0.00011 36.9 3.0 23 72-94 75-99 (355)
423 3t0q_A AGR253WP; kinesin, alph 67.5 3.7 0.00013 36.4 3.4 26 69-94 77-104 (349)
424 2ck3_D ATP synthase subunit be 67.5 34 0.0012 31.6 9.7 59 70-129 147-206 (482)
425 1fuu_A Yeast initiation factor 67.4 17 0.00057 32.4 8.0 73 277-354 88-170 (394)
426 1b0u_A Histidine permease; ABC 67.4 2.4 8.3E-05 35.9 2.1 20 74-93 30-49 (262)
427 3kta_A Chromosome segregation 67.3 2.8 9.6E-05 32.9 2.4 16 78-93 28-43 (182)
428 4f4c_A Multidrug resistance pr 67.2 6.2 0.00021 42.0 5.5 135 73-219 441-610 (1321)
429 2h58_A Kinesin-like protein KI 67.1 3.3 0.00011 36.4 3.0 26 69-94 72-99 (330)
430 3foj_A Uncharacterized protein 67.1 4.7 0.00016 28.1 3.3 36 277-312 55-90 (100)
431 2jeo_A Uridine-cytidine kinase 67.1 2.4 8.3E-05 35.4 2.0 19 75-93 24-42 (245)
432 1f9v_A Kinesin-like protein KA 67.0 3.9 0.00013 36.2 3.4 26 69-94 76-103 (347)
433 3gk5_A Uncharacterized rhodane 66.9 4.5 0.00015 28.7 3.2 36 277-312 54-89 (108)
434 1vpl_A ABC transporter, ATP-bi 66.9 2.5 8.6E-05 35.7 2.1 20 74-93 39-58 (256)
435 2qi9_C Vitamin B12 import ATP- 66.8 2.4 8.1E-05 35.6 1.9 21 73-93 23-43 (249)
436 3k1j_A LON protease, ATP-depen 66.8 3.9 0.00013 39.5 3.6 22 72-93 56-77 (604)
437 2zu0_C Probable ATP-dependent 66.7 2.5 8.7E-05 35.9 2.1 20 74-93 44-63 (267)
438 3m6a_A ATP-dependent protease 66.7 2.6 8.7E-05 40.1 2.3 19 75-93 107-125 (543)
439 3bs4_A Uncharacterized protein 66.7 4.8 0.00016 34.0 3.8 51 76-130 21-71 (260)
440 2ck3_A ATP synthase subunit al 66.6 24 0.0008 32.9 8.6 62 68-129 154-222 (510)
441 3lre_A Kinesin-like protein KI 66.6 3.4 0.00012 36.7 3.0 33 62-94 82-124 (355)
442 3dc4_A Kinesin-like protein NO 66.5 3.1 0.00011 36.8 2.6 21 73-93 90-112 (344)
443 2yhs_A FTSY, cell division pro 66.4 5 0.00017 37.4 4.1 35 76-113 293-327 (503)
444 2ixe_A Antigen peptide transpo 66.3 2.6 9E-05 35.9 2.1 30 181-210 174-203 (271)
445 2olj_A Amino acid ABC transpor 66.3 2.6 9E-05 35.7 2.1 20 74-93 48-67 (263)
446 3nh6_A ATP-binding cassette SU 66.3 1.8 6.2E-05 37.6 1.1 20 74-93 78-97 (306)
447 2d2e_A SUFC protein; ABC-ATPas 66.2 2.6 8.9E-05 35.4 2.0 21 73-93 26-46 (250)
448 2yz2_A Putative ABC transporte 66.1 2.7 9.2E-05 35.7 2.1 21 73-93 30-50 (266)
449 2nq2_C Hypothetical ABC transp 65.9 2.6 9E-05 35.5 2.0 20 74-93 29-48 (253)
450 3eme_A Rhodanese-like domain p 65.9 4.4 0.00015 28.4 3.0 36 277-312 55-90 (103)
451 2vvg_A Kinesin-2; motor protei 65.8 3.7 0.00013 36.4 3.0 21 73-93 85-107 (350)
452 2zfi_A Kinesin-like protein KI 65.7 3.6 0.00012 36.7 2.9 23 72-94 84-108 (366)
453 4etp_A Kinesin-like protein KA 65.7 3.5 0.00012 37.4 2.9 26 69-94 132-159 (403)
454 4a14_A Kinesin, kinesin-like p 65.6 3.8 0.00013 36.3 3.0 21 73-93 79-101 (344)
455 2y65_A Kinesin, kinesin heavy 65.3 3.8 0.00013 36.5 3.0 22 73-94 80-103 (365)
456 1t5c_A CENP-E protein, centrom 65.2 3.3 0.00011 36.7 2.6 23 72-94 72-96 (349)
457 3b6u_A Kinesin-like protein KI 65.2 3.3 0.00011 37.0 2.6 23 72-94 96-120 (372)
458 2ihy_A ABC transporter, ATP-bi 65.1 2.8 9.5E-05 35.9 2.0 20 74-93 45-64 (279)
459 3gbj_A KIF13B protein; kinesin 65.1 3.3 0.00011 36.8 2.5 25 70-94 85-111 (354)
460 1vht_A Dephospho-COA kinase; s 64.9 2.8 9.5E-05 34.2 1.9 18 77-94 5-22 (218)
461 2nr8_A Kinesin-like protein KI 64.7 3.4 0.00012 36.8 2.6 25 70-94 96-122 (358)
462 3cmw_A Protein RECA, recombina 64.4 5.1 0.00018 43.4 4.2 39 73-114 31-69 (1706)
463 2oca_A DAR protein, ATP-depend 64.4 52 0.0018 30.6 11.0 74 109-191 349-426 (510)
464 3bfn_A Kinesin-like protein KI 64.4 3.8 0.00013 36.8 2.8 33 62-94 75-117 (388)
465 2qe7_A ATP synthase subunit al 64.3 28 0.00095 32.4 8.5 59 68-129 154-214 (502)
466 1x88_A Kinesin-like protein KI 64.2 3.4 0.00012 36.8 2.5 24 71-94 82-107 (359)
467 4anj_A Unconventional myosin-V 64.0 6.3 0.00022 40.5 4.6 57 38-94 97-162 (1052)
468 1uf9_A TT1252 protein; P-loop, 63.8 3.3 0.00011 33.1 2.2 18 77-94 9-26 (203)
469 3iwh_A Rhodanese-like domain p 63.7 5.2 0.00018 28.1 3.0 36 277-312 55-90 (103)
470 3qks_A DNA double-strand break 63.7 3.1 0.00011 33.7 2.0 17 77-93 24-40 (203)
471 2r9v_A ATP synthase subunit al 63.7 27 0.00091 32.6 8.3 59 68-129 167-227 (515)
472 3cmu_A Protein RECA, recombina 63.6 5.5 0.00019 43.9 4.3 48 73-124 1078-1125(2050)
473 3oaa_A ATP synthase subunit al 63.5 34 0.0012 31.8 8.9 58 69-129 155-214 (513)
474 1rz3_A Hypothetical protein rb 63.4 2.8 9.6E-05 33.7 1.7 18 76-93 22-39 (201)
475 2wbe_C Bipolar kinesin KRP-130 63.4 3.7 0.00013 36.8 2.6 22 73-94 96-119 (373)
476 2heh_A KIF2C protein; kinesin, 63.3 4.3 0.00015 36.5 3.0 24 72-95 129-154 (387)
477 3aez_A Pantothenate kinase; tr 63.1 3.2 0.00011 36.2 2.1 21 73-93 87-107 (312)
478 3u06_A Protein claret segregat 62.9 4 0.00014 37.1 2.7 26 69-94 130-157 (412)
479 3cob_A Kinesin heavy chain-lik 62.9 3.4 0.00011 36.9 2.2 25 70-94 72-98 (369)
480 1tf7_A KAIC; homohexamer, hexa 62.9 5.9 0.0002 37.4 4.0 42 73-117 278-319 (525)
481 3auy_A DNA double-strand break 62.9 2.7 9.2E-05 37.7 1.6 17 77-93 26-42 (371)
482 2owm_A Nckin3-434, related to 62.8 4.4 0.00015 37.2 3.0 31 64-94 115-155 (443)
483 2q5c_A NTRC family transcripti 62.6 57 0.0019 25.9 9.9 113 279-402 5-121 (196)
484 3eiq_A Eukaryotic initiation f 62.6 23 0.00079 31.7 8.0 76 277-355 107-192 (414)
485 2rep_A Kinesin-like protein KI 62.4 4.4 0.00015 36.3 2.8 25 70-94 108-134 (376)
486 4akg_A Glutathione S-transfera 62.0 3 0.0001 47.4 2.1 21 73-93 1264-1284(2695)
487 2vp4_A Deoxynucleoside kinase; 62.0 3.6 0.00012 34.0 2.1 19 75-93 19-37 (230)
488 2dhr_A FTSH; AAA+ protein, hex 61.8 3.4 0.00012 38.7 2.1 17 77-93 65-81 (499)
489 2bbs_A Cystic fibrosis transme 61.6 3.2 0.00011 35.8 1.8 20 74-93 62-81 (290)
490 1uj2_A Uridine-cytidine kinase 61.6 3.5 0.00012 34.6 2.0 17 78-94 24-40 (252)
491 1odf_A YGR205W, hypothetical 3 61.6 3.4 0.00012 35.6 2.0 17 77-93 32-48 (290)
492 1ry6_A Internal kinesin; kines 61.6 4.5 0.00015 36.0 2.7 19 76-94 83-103 (360)
493 1fx0_B ATP synthase beta chain 61.5 19 0.00066 33.4 7.0 59 70-129 159-218 (498)
494 4eaq_A DTMP kinase, thymidylat 61.3 4.7 0.00016 33.3 2.7 20 75-94 25-44 (229)
495 2f1r_A Molybdopterin-guanine d 61.3 2.1 7.3E-05 33.5 0.6 17 78-94 4-20 (171)
496 1ltq_A Polynucleotide kinase; 61.2 3.5 0.00012 35.6 2.0 17 78-94 4-20 (301)
497 1q0u_A Bstdead; DEAD protein, 61.2 4.5 0.00015 32.9 2.6 73 278-354 72-158 (219)
498 1svm_A Large T antigen; AAA+ f 60.9 5 0.00017 36.0 2.9 20 74-93 167-186 (377)
499 1nij_A Hypothetical protein YJ 60.7 6 0.0002 34.6 3.4 16 78-93 6-21 (318)
500 3pxi_A Negative regulator of g 60.6 4.8 0.00017 40.1 3.1 19 76-94 201-219 (758)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-60 Score=446.57 Aligned_cols=373 Identities=32% Similarity=0.516 Sum_probs=337.2
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC-----CceeEE
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL-----VECQAL 111 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~-----~~~~~l 111 (412)
+..+|+++++++.+.+.+...||..|+|+|+++++.+++|+++++++|||||||++|+++++..+.... .++++|
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 466899999999999999999999999999999999999999999999999999999999998775432 356899
Q ss_pred EEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCc
Q 015158 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEAD 191 (412)
Q Consensus 112 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h 191 (412)
|++|+++|+.|+.+++.++....++.+..++|+............+++|+|+||++|.+.+.+....+.+++++|+||||
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEAD 213 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHH
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHh
Confidence 99999999999999999998877888889999988777766677789999999999999998888888999999999999
Q ss_pred hhhccCcHHHHHHHHHhC--CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHH
Q 015158 192 EMLSRGFKDQIYDIFQLL--PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETL 269 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 269 (412)
++.+++|...+..++..+ ++..+++++|||++.........++..+..+...........+.+.+..... ..+...+
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l 292 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK-YAKRSKL 292 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG-GGHHHHH
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc-HHHHHHH
Confidence 999999999999998875 5688999999999999988888889888888877766666677777776655 4577788
Q ss_pred HHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 270 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 270 ~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
.+++..... ++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 293 ~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~ 371 (434)
T 2db3_A 293 IEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKH 371 (434)
T ss_dssp HHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCE
T ss_pred HHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCE
Confidence 888887654 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEecc-CcHHHHHHHHHHhccccccCChhhhhc
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
||+++.|.+..+|+||+||+||.|+.|.+++|+++ .+...+..+.+.++...+++|++|.++
T Consensus 372 VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 372 VINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp EEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred EEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 99999999999999999999999999999999994 577888999999999999999998753
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.5e-60 Score=447.84 Aligned_cols=377 Identities=68% Similarity=1.073 Sum_probs=348.0
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
....+|+++++++.+.+.+..+||..|+++|+++++.+++++++++.+|||+|||++++++++..+.....+.++||++|
T Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 34 DVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred cCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34568999999999999999999999999999999999999999999999999999999999988765556679999999
Q ss_pred CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 116 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
+++|+.|+.+.+..+....++.+..+.|+.....+......+++|+|+||+.+...+.+......++++||+||||++.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~ 193 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN 193 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh
Confidence 99999999999999988888899999998887776666667789999999999999988877888999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh
Q 015158 196 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET 275 (412)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (412)
+++...+..+...+++..+++++|||++.........++..+..+...........+...+........+...+.+++..
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 273 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDT 273 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHh
Confidence 99999999999999999999999999998887777888888888777777777778888888887777788899999988
Q ss_pred cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 276 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 276 ~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
...+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~ 353 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDL 353 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhcC
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 412 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (412)
|++...|.||+||+||.|++|.+++++++.+...++.++++++.+++++|.+..+++
T Consensus 354 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 354 PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred CCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999999999999998887764
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-60 Score=445.14 Aligned_cols=384 Identities=72% Similarity=1.115 Sum_probs=334.6
Q ss_pred CCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCce
Q 015158 29 DFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVEC 108 (412)
Q Consensus 29 ~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~ 108 (412)
.....+.....+|+.+++++.+.+.+..+++..|+++|+++++.+++++++++.+|||+|||++++++++..+.....+.
T Consensus 30 ~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~ 109 (414)
T 3eiq_A 30 VIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT 109 (414)
T ss_dssp CCCCCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC
T ss_pred ccCCCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce
Confidence 34455667778999999999999999999999999999999999999999999999999999999999998887655667
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc-CCCcEEEeChHHHHHHHHcCCCCCCCceEEEE
Q 015158 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS-SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVL 187 (412)
Q Consensus 109 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iii 187 (412)
+++|++|+++|+.|+.+.+..+....+..+....|+........... ..++|+|+||++|.+.+.+..+...++++||+
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 89999999999999999999998888888888888877655544433 67899999999999999888777888999999
Q ss_pred eCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHH
Q 015158 188 DEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLE 267 (412)
Q Consensus 188 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (412)
||||++.++++...+..++..++++.+++++|||++.........++..+..+...........+...+........+..
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLD 269 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHH
Confidence 99999999999999999999999999999999999999888888899999888887777778888888888888788899
Q ss_pred HHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC
Q 015158 268 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 347 (412)
Q Consensus 268 ~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~ 347 (412)
.+.+++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v 349 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQV 349 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGC
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCC
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhcC
Q 015158 348 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 412 (412)
Q Consensus 348 ~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (412)
++||+++.|+|...|.||+||+||.|++|.|++++++.+...++.++++++..++++|.++.+||
T Consensus 350 ~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 350 SLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp SCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred CEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999998876
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.6e-58 Score=433.72 Aligned_cols=375 Identities=34% Similarity=0.509 Sum_probs=330.8
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC----------
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---------- 105 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---------- 105 (412)
.+..+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++|+++++..+....
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~ 91 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKE 91 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccc
Confidence 3445799999999999999999999999999999999999999999999999999999999987764321
Q ss_pred --------CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC
Q 015158 106 --------VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL 177 (412)
Q Consensus 106 --------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~ 177 (412)
..+++||++|+++|+.|+.+.+.++....++.+..++|+............+++|+|+||++|...+....+
T Consensus 92 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 92 NGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCc
Confidence 225799999999999999999999987778889999998887776666677889999999999999988877
Q ss_pred CCCCceEEEEeCCchhhccCcHHHHHHHHHh--CCC--CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCce
Q 015158 178 RPDNIRIFVLDEADEMLSRGFKDQIYDIFQL--LPP--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 253 (412)
Q Consensus 178 ~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~--~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
...++++||+||||++.+++|...+..+... ++. ..+++++|||+++........++..+..+...........+.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 7889999999999999999999999998874 332 578999999999988888888888888777766666666777
Q ss_pred EEEEEeccchhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEE
Q 015158 254 QFHVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 332 (412)
Q Consensus 254 ~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vl 332 (412)
..+..... ..+...+.++++.. ..+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+||
T Consensus 252 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 252 QKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp EEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred EEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 76666654 55777888888876 45789999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhc
Q 015158 333 ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 333 v~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 411 (412)
|+|+++++|+|+|++++||+++.|.|...|.||+||+||.|+.|.+++++++.+...++.+.++++...++++.++.++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888654
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=6.1e-58 Score=428.78 Aligned_cols=372 Identities=42% Similarity=0.682 Sum_probs=333.1
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
...+|+++++++.+.+.|...||..|+++|.++++.+++++++++.+|||+|||++++++++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 34679999999999999999999999999999999999999999999999999999999999887665556689999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc
Q 015158 117 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 196 (412)
++|+.|+.+.+..+....++.+....|+............+++|+|+||++|.+.+.+......++++||+||||++.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 99999999999999887788899999988776666666678899999999999988887777889999999999999888
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc
Q 015158 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL 276 (412)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (412)
++...+..+...+++..+++++|||++......+...+..+..+.... ......+...+..... ..+...+..++...
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~k~~~l~~~~~~~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEE-RQKLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCG-GGHHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEech-hhHHHHHHHHHhhc
Confidence 888889999998988999999999999988888888888776554433 2344455555554443 56778888888888
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 356 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~ 356 (412)
..+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p 336 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFP 336 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhh
Q 015158 357 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 410 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (412)
+|...|.||+||+||.|++|.|++++++.+...++.+++.++..++++|.++.+
T Consensus 337 ~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 337 KTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp SSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred CCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 999999999999999999999999999999999999999999999999987755
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-56 Score=419.04 Aligned_cols=369 Identities=39% Similarity=0.654 Sum_probs=325.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.+|+++++++.+.+.|...||..|+|+|.++++.++.++++++.+|||+|||++++++++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 47999999999999999999999999999999999999999999999999999999999988766555678999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc
Q 015158 119 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 196 (412)
|+.|+.+.+.++.... ++.+..++|+.......... ...++|+|+||+++...+........++++||+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987665 78888899887765554433 345799999999999998888777889999999999998873
Q ss_pred -CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc-cccCCceEEEEEeccchhhHHHHHHHHH
Q 015158 197 -GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFHVNVEKEEWKLETLCDLYE 274 (412)
Q Consensus 197 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 274 (412)
++...+..++...+...+++++|||+++........++..+..+...... .....+...+..... ..+...+.+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD-NEKNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCG-GGHHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCc-hhHHHHHHHHHH
Confidence 67788888888888899999999999998888888888888877665443 333455555555443 567788888888
Q ss_pred hcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc
Q 015158 275 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 354 (412)
Q Consensus 275 ~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~ 354 (412)
....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~ 326 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 326 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESS
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHhhhhcccCCCCceEEEEeccC-cHHHHHHHHHHhccccccCChhh
Q 015158 355 LPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 355 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
.|+|...|.||+||+||.|++|.+++++++. +.+.++.+++.++..++++|.++
T Consensus 327 ~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (391)
T 1xti_A 327 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 381 (391)
T ss_dssp CCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCC
T ss_pred CCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCccc
Confidence 9999999999999999999999999999876 56778999999999999888654
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-59 Score=438.88 Aligned_cols=386 Identities=63% Similarity=0.973 Sum_probs=191.3
Q ss_pred CCCCCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC
Q 015158 26 DGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL 105 (412)
Q Consensus 26 ~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~ 105 (412)
++..+....+....+|+++++++.+.+.+..+|+..|+++|+++++.+.+++++++.+|||+|||++++++++..+....
T Consensus 8 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~ 87 (394)
T 1fuu_A 8 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV 87 (394)
T ss_dssp ---CEEESSCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC
T ss_pred cccchhhhcccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC
Confidence 34444555666677899999999999999999999999999999999999999999999999999999999998877665
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEE
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIF 185 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 185 (412)
.+++++|++|+++|+.|+.+.+.++....+..+..++|+........... +++|+|+||+++...+.+......++++|
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~v 166 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMF 166 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEE
Confidence 66799999999999999999999998877888999998887655444333 57899999999999998877778899999
Q ss_pred EEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhh
Q 015158 186 VLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWK 265 (412)
Q Consensus 186 iiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (412)
|+||||++.++++...+..+...+++..+++++|||+++........++..+..+...........+...+........+
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 99999999988899999999999999999999999999988888888898888887777666666666666666655556
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 266 ~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
...+..++.....+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|
T Consensus 247 ~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~ 326 (394)
T 1fuu_A 247 YECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQ 326 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcc
Confidence 77777777777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhhcC
Q 015158 346 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 412 (412)
Q Consensus 346 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 412 (412)
++++||+++.|+|...|.||+||+||.|++|.|++++++.+...++.++++++..+++++.++.++|
T Consensus 327 ~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 327 QVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp -------------------------------------------------------------------
T ss_pred cCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998877654
No 8
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=9.4e-56 Score=413.45 Aligned_cols=366 Identities=40% Similarity=0.701 Sum_probs=327.2
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
...+|+++++++.+.+.+...++..|+|+|.++++.++.+ +++++.+|||+|||++++++++..+.....+.++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4578999999999999999999999999999999999998 89999999999999999999998877655667899999
Q ss_pred CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
|+++|+.|+.+.+.++....+..+....++..... ...+++|+|+||+.+...+.+......++++||+||||++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 99999999999999988777777777776654222 23467999999999999998877778899999999999988
Q ss_pred c-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHH
Q 015158 195 S-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY 273 (412)
Q Consensus 195 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (412)
+ .++...+..+...++++.+++++|||+++........++..+..+...........+...+........+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 677888888999999999999999999998888888888888888777777777778888888777777888888888
Q ss_pred HhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEc
Q 015158 274 ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 353 (412)
Q Consensus 274 ~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~ 353 (412)
.....+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~ 318 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNY 318 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEES
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC------ChhhHHHhhhhcccCCCCceEEEEecc-CcHHHHHHHHHHhc-cccccCCh
Q 015158 354 DLPT------QPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYN-VVIEELPA 406 (412)
Q Consensus 354 ~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~ 406 (412)
+.|+ |...|.||+||+||.|++|.+++++++ .+...+..+++++. .++..++.
T Consensus 319 ~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 319 DLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp SCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred CCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 9998 999999999999999999999999986 45667788888888 66666663
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.3e-55 Score=404.93 Aligned_cols=361 Identities=36% Similarity=0.618 Sum_probs=318.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC-ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG-LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~-~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
...+|+++++++.+.+.|...|+..|+|+|+++++.++++ +++++.+|||+|||++++.+++..+... .+.+++|++|
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P 82 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTP 82 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECS
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcC
Confidence 3467999999999999999999999999999999999988 7999999999999999999888776543 4568999999
Q ss_pred CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 116 TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
+++|+.|+.+.+..+....+..+....|+........... +++|+|+||+++.+.+........++++||+||||.+.+
T Consensus 83 ~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 83 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh
Confidence 9999999999999998777888888888877655544443 579999999999999988777788999999999999999
Q ss_pred cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh
Q 015158 196 RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET 275 (412)
Q Consensus 196 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 275 (412)
+++...+..++..+++..+++++|||++.........+++....+..... ..+...+..... ..+...+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~l~~~l~- 235 (367)
T 1hv8_A 162 MGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNE-NERFEALCRLLK- 235 (367)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCG-GGHHHHHHHHHC-
T ss_pred hchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeCh-HHHHHHHHHHHh-
Confidence 99999999999999899999999999999888888888776655443322 244555555443 456677777776
Q ss_pred cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 276 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 276 ~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
...+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~ 315 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHL 315 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSC
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
|+|...|.||+||+||.|++|.+++++++.+...++.+++.++..+++++
T Consensus 316 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 316 PQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred CCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 99999999999999999999999999999999999999999999888765
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.1e-55 Score=413.38 Aligned_cols=368 Identities=39% Similarity=0.674 Sum_probs=326.5
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
...+|+++++++.+.+.+...||..|+++|.++++.++++ +++++.+|||+|||++++++++..+.....+++++|++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 102 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 102 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEEC
Confidence 3568999999999999999999999999999999999987 89999999999999999999998887766677899999
Q ss_pred CCHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCch
Q 015158 115 PTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~ 192 (412)
|+++|+.|+.+.+.++.... +..+....++...... ....++|+|+||+++...+.+ ..+...++++||+||||+
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~ 179 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 179 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHH
Confidence 99999999999999987653 5667777766553322 234578999999999998865 445567899999999999
Q ss_pred hhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHH
Q 015158 193 MLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCD 271 (412)
Q Consensus 193 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 271 (412)
+.+ .++...+..+...++.+.+++++|||+++.........+..+..+...........+...+........+...+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 259 (412)
T 3fht_A 180 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCN 259 (412)
T ss_dssp HHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred HhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHH
Confidence 886 6788888899999999999999999999998899999999988888777777777888888888877788889999
Q ss_pred HHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEE
Q 015158 272 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 351 (412)
Q Consensus 272 ~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi 351 (412)
++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi 339 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 339 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCC------ChhhHHHhhhhcccCCCCceEEEEeccCc-HHHHHHHHHHhccccccCChh
Q 015158 352 NYDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPAN 407 (412)
Q Consensus 352 ~~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 407 (412)
+++.|+ +...|.||+||+||.|+.|.+++++++.+ ...++.+++.+...+++++.+
T Consensus 340 ~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 340 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp ESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred EECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 999994 66899999999999999999999998764 888899999999988888753
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=5.4e-55 Score=417.51 Aligned_cols=366 Identities=39% Similarity=0.677 Sum_probs=174.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
..+|+.+++++.+.+.|..+||..|+|+|.++++.++.+ +++++.+|||||||++|+++++..+.....++++||++|
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 568999999999999999999999999999999999987 899999999999999999999998877666678999999
Q ss_pred CHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCchh
Q 015158 116 TRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~~ 193 (412)
+++|+.|+.+.+..+.... +..+....++...... .....+|+|+||+.+..++.+ ..+.+.++++||+||+|++
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~ 247 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVM 247 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHH
Confidence 9999999999998886543 5566666665543222 133568999999999998865 3455688999999999998
Q ss_pred hc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHH
Q 015158 194 LS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDL 272 (412)
Q Consensus 194 ~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 272 (412)
.+ .++...+..+...++.+.+++++|||++.........++..+..+...........+.+.+........+...+..+
T Consensus 248 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 327 (479)
T 3fmp_B 248 IATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNL 327 (479)
T ss_dssp HTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-----------------------------
T ss_pred hhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHH
Confidence 86 57788888899999999999999999999988999999998888888777766677777777766666677788888
Q ss_pred HHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE
Q 015158 273 YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 352 (412)
Q Consensus 273 ~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~ 352 (412)
+.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+
T Consensus 328 ~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~ 407 (479)
T 3fmp_B 328 YGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN 407 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE
Confidence 88777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC------ChhhHHHhhhhcccCCCCceEEEEeccCc-HHHHHHHHHHhccccccCCh
Q 015158 353 YDLPT------QPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 353 ~~~~~------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 406 (412)
++.|. +...|.||+||+||.|+.|.+++++++.+ ...++.+++++...++.++.
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp -------------------------------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 99994 66899999999999999999999998765 78888999999988887764
No 12
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.3e-52 Score=381.02 Aligned_cols=335 Identities=31% Similarity=0.538 Sum_probs=287.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEK 125 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~ 125 (412)
+++.+.+.+..+|+..|+|+|+++++.+.+++++++.+|||+|||++++++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999998888764 3479999999999999999
Q ss_pred HHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHH
Q 015158 126 VMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDI 205 (412)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i 205 (412)
.+.++....+..+..++|+........... .++|+|+||++|.+.+........++++||+||||++.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998777888988988877655544433 4799999999999988877777788999999999999999999999999
Q ss_pred HHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEE
Q 015158 206 FQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFV 285 (412)
Q Consensus 206 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~ 285 (412)
+...+...+++++|||+++........++..+..+... .....+...+....... ......+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW---RSKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS---HHHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH---HHHHHHHHhCCCCcEEEEE
Confidence 99999899999999999998888888888776655322 23344555555444322 2223556666778999999
Q ss_pred cchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHh
Q 015158 286 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 365 (412)
Q Consensus 286 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~ 365 (412)
++++.++.+++.|. .+..+||+++..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|...|.||
T Consensus 228 ~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~ 303 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHR 303 (337)
T ss_dssp SCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHH
T ss_pred cCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHh
Confidence 99999999999887 57899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCceEEEEeccCcHHHHHHHHHHhc
Q 015158 366 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 366 ~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
+||+||.|++|.+++++. .+...++.+++.++
T Consensus 304 ~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 304 IGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred cCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 999999999999999999 88888888877665
No 13
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.3e-52 Score=406.29 Aligned_cols=358 Identities=30% Similarity=0.456 Sum_probs=295.9
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhh--cCccEEEECCCCCCchhHhHHHHHHhhccCC----CceeEEEEcCCHH
Q 015158 45 GLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VECQALVLAPTRE 118 (412)
Q Consensus 45 ~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~ 118 (412)
.+++.+.+.+..+||..|+|+|.++++.++ .++++++.+|||+|||++|+++++..+.... .+.++||++|+++
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 27 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHH
Confidence 389999999999999999999999999999 7889999999999999999999998775542 2458999999999
Q ss_pred HHHHHHHHHHHhhc----ccCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCCch
Q 015158 119 LAQQIEKVMRALGD----YLGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEADE 192 (412)
Q Consensus 119 L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~h~ 192 (412)
|+.|+.+.+.++.. .....+....|+.......... ..+++|+|+||++|...+.+. ...+..+++||+||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998753 2345677777777655544333 447899999999998877653 23457799999999999
Q ss_pred hhccCcHHHHHHHHHhCC-------CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc----cccCCceEEEEEecc
Q 015158 193 MLSRGFKDQIYDIFQLLP-------PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFHVNVEK 261 (412)
Q Consensus 193 ~~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 261 (412)
+.+++|...+..+...++ .+.+++++|||+++........++..+..+...... .....+.........
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999988888876653 367999999999998888888888877666554322 222344444444443
Q ss_pred chhh----HHHHHHHHHh-cCCCcEEEEEcchhHHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE
Q 015158 262 EEWK----LETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLI 333 (412)
Q Consensus 262 ~~~~----~~~l~~~~~~-~~~~k~lif~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 333 (412)
.... ...+...+.. ...+++||||++++.++.+++.|++. +..+..+||+++..+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2222 2233333333 45679999999999999999999876 88999999999999999999999999999999
Q ss_pred EcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccc
Q 015158 334 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 402 (412)
Q Consensus 334 ~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
||+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++++++.+...++.+++.....+.
T Consensus 347 aT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 347 CTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred EcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999988776554
No 14
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.5e-54 Score=412.12 Aligned_cols=364 Identities=38% Similarity=0.637 Sum_probs=272.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.|...++++.+.+.+...++..|+++|.++++.++++ +++++.+|||+|||++++++++..+.....++++||++|++
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 4556678888999999999999999999999999998 99999999999999999999999887766677999999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-c
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-R 196 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-~ 196 (412)
+|+.|+.+.+.++....+..+....++..... ....++|+|+||+++.+.+.+......++++||+||||++.+ .
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~ 275 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQ 275 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccC
Confidence 99999999999987666655555444433211 233679999999999999988887888999999999999887 5
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc
Q 015158 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL 276 (412)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (412)
++...+..+...++++.+++++|||+++........+...+..+...........+...+........+...+..++...
T Consensus 276 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~ 355 (508)
T 3fho_A 276 GLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLL 355 (508)
T ss_dssp -CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhc
Confidence 78888999999999999999999999988888888888888887777766666777777777777677888888888888
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 356 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~ 356 (412)
..+++||||+++++++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.|
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------CChhhHHHhhhhcccCCCCceEEEEecc-CcHHHHHHHHHHhccccccCChh
Q 015158 357 ------TQPENYLHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPAN 407 (412)
Q Consensus 357 ------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 407 (412)
.|...|.||+||+||.|++|.+++++++ .+.+.+..+++++...+++++.+
T Consensus 436 ~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 436 LDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred CcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 8899999999999999999999999984 56778899999999998888853
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-51 Score=402.52 Aligned_cols=357 Identities=30% Similarity=0.461 Sum_probs=293.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhh--cCccEEEECCCCCCchhHhHHHHHHhhccCC----CceeEEEEcCCHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VECQALVLAPTREL 119 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L 119 (412)
+++.+.+.+..+||..|+|+|.++++.++ .++++++.+|||+|||++|+++++..+.... .+.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 89999999999999999999999999999 6789999999999999999999998876543 23589999999999
Q ss_pred HHHHHHHHHHhhcc----cCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCCchh
Q 015158 120 AQQIEKVMRALGDY----LGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 120 ~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~h~~ 193 (412)
+.|+.+.+.++... ....+..+.|+.......... ..+++|+|+||++|...+.+. ...++++++||+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 99999999986432 245677777777655443333 457899999999998877653 223567999999999999
Q ss_pred hccCcHHHHHHHHHhCC-------CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCc----cccCCceEEEEEeccc
Q 015158 194 LSRGFKDQIYDIFQLLP-------PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFHVNVEKE 262 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 262 (412)
.+++|...+..+...++ ++.+++++|||+++........++..+..+...... .....+...+......
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESST
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchh
Confidence 99999888888776652 377899999999988888888888777666543322 1223344444444433
Q ss_pred hhhH----HHHHHHHHh-cCCCcEEEEEcchhHHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEE
Q 015158 263 EWKL----ETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 334 (412)
Q Consensus 263 ~~~~----~~l~~~~~~-~~~~k~lif~~~~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~ 334 (412)
.... ..+...+.. ...+++||||++++.++.+++.|++. +..+..+||+++..+|..+++.|++|+.+||||
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 2222 223333333 45679999999999999999999876 889999999999999999999999999999999
Q ss_pred cCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccc
Q 015158 335 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 402 (412)
Q Consensus 335 t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
|+++++|+|+|++++||+++.|.+...|+||+||+||.|+.|.|++++.+.+...++.+++..+..++
T Consensus 399 T~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 399 TDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp CGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred cchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999988775544
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=7.8e-51 Score=393.01 Aligned_cols=344 Identities=17% Similarity=0.221 Sum_probs=275.5
Q ss_pred ccccc--cCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 38 YDTFD--AMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 38 ~~~f~--~~~l~~~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
...|. .+++++.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|+++++.. .+++||++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVis 91 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVIC 91 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEEC
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEe
Confidence 34444 47788999999998 79999999999999999999999999999999999999988753 24899999
Q ss_pred CCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH------hcCCCcEEEeChHHHH------HHHHcCCCCCCCc
Q 015158 115 PTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI------LSSGVHVVVGTPGRVF------DMLRRQSLRPDNI 182 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~iii~T~~~l~------~~~~~~~~~~~~~ 182 (412)
|+++|+.|+.+.+.++ ++.+..++++......... .....+|+|+||++|. +.+.. .....++
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i 166 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRF 166 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCE
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCC
Confidence 9999999999999987 7788888888765544322 2467899999999874 22221 2234678
Q ss_pred eEEEEeCCchhhccC--cHHHHHH--HHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEE
Q 015158 183 RIFVLDEADEMLSRG--FKDQIYD--IFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVN 258 (412)
Q Consensus 183 ~~iiiDE~h~~~~~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (412)
++||+||||++.+|+ |...+.. .+....++.+++++|||+++.....+...++.+....... ....+++......
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~ 245 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQ 245 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEe
Confidence 999999999998876 5544433 2333335789999999999988787777766543332222 2233444433333
Q ss_pred ecc-chhhHHHHHHHHHh-cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015158 259 VEK-EEWKLETLCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 336 (412)
Q Consensus 259 ~~~-~~~~~~~l~~~~~~-~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 336 (412)
... .......+.+++.. ...+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|.+|+.+|||+|+
T Consensus 246 ~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 246 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 222 23345566666654 3568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHH
Q 015158 337 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393 (412)
Q Consensus 337 ~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 393 (412)
++++|+|+|++++||+++.|.|...|.|++||+||.|++|.|++++.+.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877655443
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=9.1e-51 Score=388.97 Aligned_cols=339 Identities=18% Similarity=0.274 Sum_probs=276.2
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 39 DTFDAMGLQENLLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.+|+.+++++.+.+.|.. +|+..|+|+|.++++.+++|+++++.+|||+|||++|+++++.. .+.+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 578999999999999998 89999999999999999999999999999999999999888743 24799999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH----HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVRED----QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+|+.|+.+.+..+ ++.+..++++...... .....+..+|+++||+++........+...++++||+||||++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999999886 6778888877664433 2233567899999999985322111223367899999999999
Q ss_pred hccC--cHHHHH---HHHHhCCCCceEEEEeecCChHHHHHHHHhcC--CCeEEEecCCccccCCceEEEEEeccchhhH
Q 015158 194 LSRG--FKDQIY---DIFQLLPPKIQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFHVNVEKEEWKL 266 (412)
Q Consensus 194 ~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (412)
.+++ |...+. .+...++ +.+++++|||+++.....+...++ .+..+ .. ....+++...... ...+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~--~~~r~~l~~~v~~---~~~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-IS--SFDRPNIRYMLME---KFKPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-EC--CCCCTTEEEEEEE---CSSHH
T ss_pred CcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eC--CCCCCceEEEEEe---CCCHH
Confidence 8876 444433 3444453 688999999999877665555443 33322 22 2223344333332 24466
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCC
Q 015158 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 346 (412)
Q Consensus 267 ~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~ 346 (412)
..+.+++.....+++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|.+|+.+|||+|+++++|+|+|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~ 304 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPN 304 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTT
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccC
Confidence 77888888877789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 347 VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 347 ~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
+++||+++.|.|...|.|++||+||.|.+|.|++++++.|...++.+.
T Consensus 305 v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp CCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred ccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776655444
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=6.5e-48 Score=361.98 Aligned_cols=325 Identities=21% Similarity=0.263 Sum_probs=257.1
Q ss_pred HHHHHHH-CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 50 LLRGIYA-YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 50 ~~~~l~~-~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
+.+.++. +++ +|+|+|.++++.+++++++++.+|||+|||++++++++.... .+++++|++|+++|+.|+.+.+.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHHH
Confidence 3444444 466 499999999999999999999999999999999888877653 34689999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchH---HHHHHh-cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc---------
Q 015158 129 ALGDYLGVKVHACVGGTSVR---EDQRIL-SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS--------- 195 (412)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~--------- 195 (412)
.+.. .++.+..++|+.... ...... .+.++|+|+||+.+...+.. +...++++||+||||++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 9877 788999999988763 223333 34489999999999877664 4456899999999998764
Q ss_pred --cCcHHH-HHHHHHhCC-----------CCceEEEEeec-CChHHH-HHHHHhcCCCeEEEecCCccccCCceEEEEEe
Q 015158 196 --RGFKDQ-IYDIFQLLP-----------PKIQVGVFSAT-MPPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNV 259 (412)
Q Consensus 196 --~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (412)
.+|... +..++..++ ...+++++||| ++.... ........ +...........+.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc
Confidence 455556 677777665 78899999999 443322 22233322 11122233344455555443
Q ss_pred ccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----
Q 015158 260 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT---- 334 (412)
Q Consensus 260 ~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~---- 334 (412)
.+...+.++++.. .+++||||++++.++.+++.|++.++.+. .+||. +|. ++.|++|+.+||||
T Consensus 239 ----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 239 ----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp ----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCT
T ss_pred ----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEecCc
Confidence 2455666677663 38999999999999999999999999998 88984 344 99999999999999
Q ss_pred cCCCcCCCCCCC-CCEEEEccCC--CChhhHHHhhhhcccCC----CCceEEEEeccCcHHHHHHHHHHhc
Q 015158 335 TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 335 t~~~~~G~d~~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~g----~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
|+++++|+|+|+ +++||+++.| .|...|.||+||+||.| ..|.+++++ .+...+..++++++
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 478888888 67778888888888
No 19
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.2e-46 Score=375.88 Aligned_cols=350 Identities=19% Similarity=0.256 Sum_probs=273.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
+|+++++++.+.+.+..+||..|+++|.++++. +..++++++++|||||||+++.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 588999999999999999999999999999998 88899999999999999999999998776521 358999999999
Q ss_pred HHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCc
Q 015158 119 LAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGF 198 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~ 198 (412)
|+.|+++.++.+.. .++.+..++|+...... ...+++|+|+||++|...+.+....++++++||+||+|.+.++.+
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999965543 48889999987654332 224679999999999998887665578899999999999988788
Q ss_pred HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEE-----Eecc-----chhhHHH
Q 015158 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHV-----NVEK-----EEWKLET 268 (412)
Q Consensus 199 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~ 268 (412)
...+..++..++.+.+++++|||+++. ..+..+++.... ... ..+..+...+. .... .......
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~---~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP--EELAEWLNAELI-VSD---WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH--HHHHHHTTEEEE-ECC---CCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH--HHHHHHhCCccc-CCC---CCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 888888888877789999999999752 334444442211 110 01111111111 0111 1233444
Q ss_pred HHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC---------------------------------CCeeEEecCCCCHH
Q 015158 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQN 315 (412)
Q Consensus 269 l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~---------------------------------~~~~~~~~~~~~~~ 315 (412)
+.+.+. ..+++||||++++.++.+++.|.+. ...+..+||+++..
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~ 307 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRD 307 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHH
Confidence 444444 3479999999999999999998753 12489999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----cc----CCCChhhHHHhhhhcccCC--CCceEEEEeccC
Q 015158 316 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRD 385 (412)
Q Consensus 316 ~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~ 385 (412)
+|..+++.|.+|+++|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.| ..|.|++++++.
T Consensus 308 ~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 387 (720)
T 2zj8_A 308 ERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387 (720)
T ss_dssp HHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSS
T ss_pred HHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999997 44 5899999999999999998 468899999887
Q ss_pred cHHHHHHHHHHhccccccCC
Q 015158 386 DERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~ 405 (412)
+.. ..+++++....+++.
T Consensus 388 ~~~--~~~~~~~~~~~~~i~ 405 (720)
T 2zj8_A 388 DPR--EVMNHYIFGKPEKLF 405 (720)
T ss_dssp CHH--HHHHHHTTSCCCCCC
T ss_pred cHH--HHHHHHhcCCCCCcE
Confidence 733 234456655555554
No 20
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.5e-46 Score=370.40 Aligned_cols=351 Identities=18% Similarity=0.243 Sum_probs=267.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP-FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~-~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.+|+++++++.+.+.+...||..|+++|.++++. +.+++++++++|||||||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 4699999999999999999999999999999999 78899999999999999999999998776532 35899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
+|+.|+++.++.+ ...+..+...+|+...... ....++|+|+||++|...+.+....++++++||+||+|++.+..
T Consensus 86 ~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 9999999999644 3348888888887654332 12367999999999999888765557789999999999988777
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEE-----------EEecc-----
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-----------VNVEK----- 261 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----- 261 (412)
+...+..++..++ +.+++++|||+++. ..+..+++.+.. .... .+..+...+ .....
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY--KQIAKWLGAEPV-ATNW---RPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH--HHHHHHHTCEEE-ECCC---CSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH--HHHHHHhCCCcc-CCCC---CCCCceEEEEecCCcccceeeecCcchhhh
Confidence 7888888877766 88999999999752 333344443221 1100 011111111 00110
Q ss_pred ---chhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCC------------------------------------
Q 015158 262 ---EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------------------ 302 (412)
Q Consensus 262 ---~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~------------------------------------ 302 (412)
.......+.+.+. ..+++||||++++.++.+++.|.+..
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 312 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLIS 312 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHh
Confidence 1223344444443 45899999999999999999998642
Q ss_pred CeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----cc-------CCCChhhHHHhhhhccc
Q 015158 303 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGR 371 (412)
Q Consensus 303 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R 371 (412)
..+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||
T Consensus 313 ~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR 392 (715)
T 2va8_A 313 KGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGR 392 (715)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCC
T ss_pred cCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCC
Confidence 24899999999999999999999999999999999999999999999998 77 78999999999999999
Q ss_pred CC--CCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 372 FG--RKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 372 ~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
.| .+|.|+++++..+. ....+++++....+++.
T Consensus 393 ~g~~~~G~~~~l~~~~~~-~~~~~~~~l~~~~e~~~ 427 (715)
T 2va8_A 393 PGFDQIGESIVVVRDKED-VDRVFKKYVLSDVEPIE 427 (715)
T ss_dssp TTTCSCEEEEEECSCGGG-HHHHHHHTTSSCCCCCC
T ss_pred CCCCCCceEEEEeCCchH-HHHHHHHHHcCCCCCce
Confidence 88 47899999887653 11234455544444444
No 21
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.5e-46 Score=374.19 Aligned_cols=349 Identities=16% Similarity=0.230 Sum_probs=265.5
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 40 TFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 40 ~f~~~~--l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
+|++++ +++.+.+.++.+||..|+++|.++++.+.+++++++++|||||||+++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 477777 8999999999999999999999999999999999999999999999999999987654 35899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
+|+.|+++.++.+. ..+..+..++|+...... ...+++|+|+||++|...+.+....++++++||+||+|++.+++
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996543 347889999987764332 12468999999999999888766557789999999999998877
Q ss_pred cHHHHHHHHHhC---CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEE-------EEec-----cc
Q 015158 198 FKDQIYDIFQLL---PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFH-------VNVE-----KE 262 (412)
Q Consensus 198 ~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~ 262 (412)
+...+..++..+ .++.+++++|||+++ . ..+..+++.+.. .... .+..+...+ .... ..
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~-~~~~~~l~~~~~-~~~~---r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPN-V-TEIAEWLDADYY-VSDW---RPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTT-H-HHHHHHTTCEEE-ECCC---CSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCC-H-HHHHHHhCCCcc-cCCC---CCccceEEEeeCCeeeccCcchhhhhh
Confidence 777776665554 568999999999975 2 344445553321 1111 111111111 1100 00
Q ss_pred hhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC------------------------------CCeeEEecCCC
Q 015158 263 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------------------------------DHTVSATHGDM 312 (412)
Q Consensus 263 ~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~------------------------------~~~~~~~~~~~ 312 (412)
......+.+.+. ..+++||||++++.++.+++.|.+. +..+..+||++
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l 306 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGL 306 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTS
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCC
Confidence 013444555443 4579999999999999999988752 13578899999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----cc---CCCChhhHHHhhhhcccCC--CCceEEEEec
Q 015158 313 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVT 383 (412)
Q Consensus 313 ~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~ 383 (412)
+..+|..+++.|.+|+.+|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.| .+|.|+++++
T Consensus 307 ~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 307 LNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECC
T ss_pred CHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999999999997 43 6899999999999999998 4789999998
Q ss_pred cCcHHHHHHHHHHhccccccCC
Q 015158 384 RDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
+.+.. ..+++++....+++.
T Consensus 387 ~~~~~--~~~~~~l~~~~e~~~ 406 (702)
T 2p6r_A 387 KRDRE--IAVKRYIFGEPERIT 406 (702)
T ss_dssp GGGHH--HHHHTTTSSCCCCCC
T ss_pred CccHH--HHHHHHhcCCCCCce
Confidence 87733 223344444444443
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.2e-46 Score=374.36 Aligned_cols=353 Identities=22% Similarity=0.258 Sum_probs=229.1
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC--ceeEEEEcCCHHHHHHHHHHHH
Q 015158 51 LRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--ECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 51 ~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~ 128 (412)
...+..+|+..|+++|.++++.++.|+++++++|||+|||++++++++..+..... ++++||++|+++|+.|+.+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 34566789999999999999999999999999999999999999999887654322 2589999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-CCCCceEEEEeCCchhhccCc-HHHHHHHH
Q 015158 129 ALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-RPDNIRIFVLDEADEMLSRGF-KDQIYDIF 206 (412)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iiiDE~h~~~~~~~-~~~~~~i~ 206 (412)
++....++.+..++|+............+++|+|+||+.|.+.+....+ ...++++||+||||++.+... ...+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9987778899999998765444444445689999999999999887666 578899999999999875542 22222222
Q ss_pred Hh-----CCCCceEEEEeecCC-------hHHHHHHHHhc----------------------CCCeEEEecCCccccC--
Q 015158 207 QL-----LPPKIQVGVFSATMP-------PEALEITRKFM----------------------NKPVRILVKRDELTLE-- 250 (412)
Q Consensus 207 ~~-----~~~~~~~i~~SAT~~-------~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~-- 250 (412)
.. .++..++++|||||. .+....+.... ..|.............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 246789999999997 22222222211 1121111000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 251 -------------------------------------------------------------------------------- 250 (412)
Q Consensus 251 -------------------------------------------------------------------------------- 250 (412)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred -----------------------------CceEEEE---------------EeccchhhHHHHHHHHHhc----CCCcEE
Q 015158 251 -----------------------------GIKQFHV---------------NVEKEEWKLETLCDLYETL----AITQSV 282 (412)
Q Consensus 251 -----------------------------~~~~~~~---------------~~~~~~~~~~~l~~~~~~~----~~~k~l 282 (412)
.+...+. .......+...+.+++... ..+++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 0000000 0001233556666666665 567999
Q ss_pred EEEcchhHHHHHHHHHhcCC----CeeEEe--------cCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCE
Q 015158 283 IFVNTRRKVDWLTDKMRSRD----HTVSAT--------HGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 283 if~~~~~~~~~~~~~L~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
|||++++.++.+++.|++.+ +.+..+ |++++..+|.+++++|++ |+.+|||+|+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999987 778877 559999999999999998 99999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHH----HHHhccccccCC
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI----QKFYNVVIEELP 405 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 405 (412)
||+++.|+|+..|.||+|| ||. .+|.++++++..+......+ ++++...+++++
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 540 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQ 540 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 998 78999999998877555555 555555554444
No 23
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=8.2e-46 Score=361.45 Aligned_cols=328 Identities=18% Similarity=0.202 Sum_probs=200.1
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcccCcE
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--ECQALVLAPTRELAQQIEKVMRALGDYLGVK 137 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 137 (412)
.+|+|+|.++++.++.++++++.+|||+|||++++++++..+..... ++++||++|+++|+.||.+.+..+....++.
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 35999999999999999999999999999999999999888765422 5689999999999999999999998877899
Q ss_pred EEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-CCCCceEEEEeCCchhhccCcHHHH-HHHHHh----CCC
Q 015158 138 VHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-RPDNIRIFVLDEADEMLSRGFKDQI-YDIFQL----LPP 211 (412)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iiiDE~h~~~~~~~~~~~-~~i~~~----~~~ 211 (412)
+..++|+............+++|+|+||++|.+.+....+ ...++++||+||||++.+++....+ ..++.. ..+
T Consensus 86 ~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (556)
T 4a2p_A 86 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQ 165 (556)
T ss_dssp EEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---
T ss_pred EEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCC
Confidence 9999998865554444455689999999999999988766 6788999999999999877643332 222222 135
Q ss_pred CceEEEEeecCChH----HH---H---HHHHhcCCCeEEEecCC------ccccCCceEEEEE-----------------
Q 015158 212 KIQVGVFSATMPPE----AL---E---ITRKFMNKPVRILVKRD------ELTLEGIKQFHVN----------------- 258 (412)
Q Consensus 212 ~~~~i~~SAT~~~~----~~---~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~----------------- 258 (412)
..+++++||||+.. .. . .+...+........... ....+........
T Consensus 166 ~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (556)
T 4a2p_A 166 LPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSE 245 (556)
T ss_dssp CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHH
Confidence 68899999999531 00 1 11111221111100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 259 -------------------------------------------------------------------------------- 258 (412)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (412)
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 325 (556)
T 4a2p_A 246 TEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIID 325 (556)
T ss_dssp HHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence
Q ss_pred -----------------------------------------eccchhhHHHHHHHHHh----cCCCcEEEEEcchhHHHH
Q 015158 259 -----------------------------------------VEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDW 293 (412)
Q Consensus 259 -----------------------------------------~~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~ 293 (412)
......+...+.+++.. ...+++||||+++..++.
T Consensus 326 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 405 (556)
T 4a2p_A 326 ALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSA 405 (556)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHH
Confidence 00012234444445543 456899999999999999
Q ss_pred HHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChh
Q 015158 294 LTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPE 360 (412)
Q Consensus 294 ~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~ 360 (412)
+++.|++. |.....+||+++..+|..++++|++ |+.+|||||+++++|+|+|++++||++++|+|+.
T Consensus 406 l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~ 485 (556)
T 4a2p_A 406 LKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVT 485 (556)
T ss_dssp HHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCCSCHH
T ss_pred HHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHH
Confidence 99999876 4555666788999999999999999 9999999999999999999999999999999999
Q ss_pred hHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 361 NYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 361 ~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
.|+||+|| ||. .+|.+++++++.+...
T Consensus 486 ~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 486 KMIQVRGR-GRA-AGSKCILVTSKTEVVE 512 (556)
T ss_dssp HHHHC----------CCEEEEESCHHHHH
T ss_pred HHHHhcCC-CCC-CCceEEEEEeCcchHH
Confidence 99999999 999 7899999998876543
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-44 Score=362.40 Aligned_cols=318 Identities=20% Similarity=0.278 Sum_probs=254.3
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.++|. |+++|.++++.+..++++++++|||+|||+++.++++..+..+ .+++|++|+++|+.|+++.+.++..
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECChHHHHHHHHHHHHHHhC---
Confidence 45776 9999999999999999999999999999999999888877543 5899999999999999999998764
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceE
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQV 215 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 215 (412)
.+..++|+.... ..++|+|+||++|.+.+.+....+.++++||+||+|++.++++...+..++..++.+.++
T Consensus 155 -~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 155 -DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp -CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred -CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeE
Confidence 577788877643 357899999999999888777777899999999999999988888899999999999999
Q ss_pred EEEeecCChHHH--HHHHHhcCCCeEEEecCCccccCCceEEEEEec---------cc----------------------
Q 015158 216 GVFSATMPPEAL--EITRKFMNKPVRILVKRDELTLEGIKQFHVNVE---------KE---------------------- 262 (412)
Q Consensus 216 i~~SAT~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~---------------------- 262 (412)
+++|||+++... ..+....+.+..+....... ..+...+.... ..
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCS--SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 999999976422 33333344444443332211 12222222110 00
Q ss_pred -----------------------hhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCe---------------
Q 015158 263 -----------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT--------------- 304 (412)
Q Consensus 263 -----------------------~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~--------------- 304 (412)
......+...+......++||||+++..|+.+++.|...++.
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 111223444444445569999999999999999999875432
Q ss_pred ------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----ccC-
Q 015158 305 ------------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL- 355 (412)
Q Consensus 305 ------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~~- 355 (412)
+..+||++++.+|..+++.|++|.++|||||+++++|+|+|.+++||. ++.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 788999999999999999999999999999999999999999999998 777
Q ss_pred ---CCChhhHHHhhhhcccCCC--CceEEEEeccC-cHHHH
Q 015158 356 ---PTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DERML 390 (412)
Q Consensus 356 ---~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~~~ 390 (412)
|.|+.+|.||+||+||.|. .|.|++++++. +...+
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~ 505 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVA 505 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHH
Confidence 8899999999999999997 49999999876 44433
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-45 Score=375.81 Aligned_cols=348 Identities=19% Similarity=0.214 Sum_probs=264.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
.|...++++.+...+...+...|+++|.++++.+..|+++++++|||||||++|+++++..+..+ .+++|++|+++|
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~PtraL 239 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPIKAL 239 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESSHHH
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCcHHH
Confidence 45555555555555544445559999999999999999999999999999999999999887554 589999999999
Q ss_pred HHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcH
Q 015158 120 AQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFK 199 (412)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 199 (412)
+.|+++.+.++.. .+..++|+... ..+++|+|+||++|.+.+.+....+.++++||+||||++.++++.
T Consensus 240 a~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg 308 (1108)
T 3l9o_A 240 SNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERG 308 (1108)
T ss_dssp HHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHH
T ss_pred HHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchH
Confidence 9999999999764 56778887763 345899999999999998877666778999999999999998889
Q ss_pred HHHHHHHHhCCCCceEEEEeecCChH--HHHHHHHhcCCCeEEEecCCccccCCceEEEEEecc---------c------
Q 015158 200 DQIYDIFQLLPPKIQVGVFSATMPPE--ALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEK---------E------ 262 (412)
Q Consensus 200 ~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------ 262 (412)
..+..++..++++.+++++|||+++. ....+......+..+........ .+..+++.... .
T Consensus 309 ~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~--pl~~~~~~~~~~~~~~~vd~~~~~~~~ 386 (1108)
T 3l9o_A 309 VVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT--PLQHYLFPAHGDGIYLVVDEKSTFREE 386 (1108)
T ss_dssp HHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSS--CEEEEEEETTSSCCEEEEETTTEECHH
T ss_pred HHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc--cceEEEeecCCcceeeeeccccchhhh
Confidence 99999999999999999999998764 33455555555554443322211 12222211000 0
Q ss_pred ---------------------------------------hhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCC
Q 015158 263 ---------------------------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 303 (412)
Q Consensus 263 ---------------------------------------~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~ 303 (412)
......+...+.....+++||||++++.|+.++..|...+.
T Consensus 387 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~ 466 (1108)
T 3l9o_A 387 NFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDF 466 (1108)
T ss_dssp HHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHH
T ss_pred hHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccC
Confidence 11222333444445567999999999999999999865322
Q ss_pred e---------------------------------------eEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 304 T---------------------------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 304 ~---------------------------------------~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
. +..+||++++.+|..+++.|.+|.++|||||+++++|+|+
T Consensus 467 ~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDi 546 (1108)
T 3l9o_A 467 NSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNM 546 (1108)
T ss_dssp HCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCC
Confidence 1 7899999999999999999999999999999999999999
Q ss_pred CCCCEEEEccC--------CCChhhHHHhhhhcccCC--CCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 345 QQVSLVINYDL--------PTQPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 345 ~~~~~vi~~~~--------~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
|++++||.... |.|..+|.||+||+||.| ..|.|++++++.... ..+.+++.....++.
T Consensus 547 P~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~--~~~~~l~~~~~~~L~ 615 (1108)
T 3l9o_A 547 PAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP--QVAKGMVKGQADRLD 615 (1108)
T ss_dssp --CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH--HHHHHHHHCCCCCCC
T ss_pred CCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH--HHHHHHhcCCCcccc
Confidence 99999997655 346778999999999999 578888888776332 234445544444433
No 26
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-44 Score=345.96 Aligned_cols=323 Identities=20% Similarity=0.237 Sum_probs=247.7
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
+|+|+|.++++.+..+ ++++.+|||+|||++++.++...+. ..+.++||++|+++|+.||.+++.++....+..+..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 3999999999999999 9999999999999999988887765 234589999999999999999999987444457888
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
++|+......... ...++|+|+||+.+.+.+....+...++++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~~-~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhhh-ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 8888765543332 235799999999999998887777889999999999998765444555555555566888999999
Q ss_pred cCChH---HHHHHHHhcCCCeEEEecCCcc-----ccCCceEEEEEec--------------------------------
Q 015158 221 TMPPE---ALEITRKFMNKPVRILVKRDEL-----TLEGIKQFHVNVE-------------------------------- 260 (412)
Q Consensus 221 T~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------------------------- 260 (412)
||..+ .......+.............. ............+
T Consensus 165 Tp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (494)
T 1wp9_A 165 SPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSP 244 (494)
T ss_dssp CSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCT
T ss_pred CCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 99743 2223322221111111100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 261 -------------------------------------------------------------------------------- 260 (412)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (412)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (494)
T 1wp9_A 245 DIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKR 324 (494)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHH
T ss_pred CcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHH
Confidence
Q ss_pred ---------------cchhhHHHHHHHHHh----cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecC--------CCC
Q 015158 261 ---------------KEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG--------DMD 313 (412)
Q Consensus 261 ---------------~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~--------~~~ 313 (412)
....+...+.+++.. ...+++||||++++.++.+++.|++.++.+..+|| +++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~ 404 (494)
T 1wp9_A 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLS 404 (494)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCC
Confidence 112244555566655 46789999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
..+|.+++++|++|+.+|||+|+++++|+|+|.+++||++++|+|+..|.||+||+||.|+ |.++.++++.+.+
T Consensus 405 ~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 405 QREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred HHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 9999999987654
No 27
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=5.5e-45 Score=355.59 Aligned_cols=331 Identities=20% Similarity=0.231 Sum_probs=229.0
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--ECQALVLAPTRELAQQIEKVMRALGDYLGVKV 138 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 138 (412)
+|+|+|.++++.++.++++++.+|||+|||++++++++..+..... +.++||++|+++|+.|+.+.+.++....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 3999999999999999999999999999999999999888765422 56899999999999999999999988778999
Q ss_pred EEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-CCCCceEEEEeCCchhhccC-cHHHHHHHHHhC-----CC
Q 015158 139 HACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-RPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLL-----PP 211 (412)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~-----~~ 211 (412)
..++|+............+++|+|+||++|...+..... ...++++||+||||++.+.+ +...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999876554444555689999999999999887766 67789999999999988764 223333333322 24
Q ss_pred CceEEEEeecCChHH-------HH---HHHHhcCCCeEEEecC------CccccCCceEEEEEe----------------
Q 015158 212 KIQVGVFSATMPPEA-------LE---ITRKFMNKPVRILVKR------DELTLEGIKQFHVNV---------------- 259 (412)
Q Consensus 212 ~~~~i~~SAT~~~~~-------~~---~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---------------- 259 (412)
..+++++||||.... .. .+...+.......... .....+.........
T Consensus 164 ~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (555)
T 3tbk_A 164 LPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKE 243 (555)
T ss_dssp CCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHH
Confidence 678999999995421 11 1122222111111110 000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 260 -------------------------------------------------------------------------------- 259 (412)
Q Consensus 260 -------------------------------------------------------------------------------- 259 (412)
T Consensus 244 ~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 323 (555)
T 3tbk_A 244 TEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMT 323 (555)
T ss_dssp HHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence
Q ss_pred -------------------------------------------ccchhhHHHHHHHHHh----cCCCcEEEEEcchhHHH
Q 015158 260 -------------------------------------------EKEEWKLETLCDLYET----LAITQSVIFVNTRRKVD 292 (412)
Q Consensus 260 -------------------------------------------~~~~~~~~~l~~~~~~----~~~~k~lif~~~~~~~~ 292 (412)
.....+...+.+++.. ...+++||||+++..++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~ 403 (555)
T 3tbk_A 324 DALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVD 403 (555)
T ss_dssp HHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHH
Confidence 0012234444444443 35589999999999999
Q ss_pred HHHHHHhcCC------------CeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCCh
Q 015158 293 WLTDKMRSRD------------HTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLPTQP 359 (412)
Q Consensus 293 ~~~~~L~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~ 359 (412)
.+++.|++.+ .....+||+++..+|.+++++|++ |+.+|||||+++++|+|+|++++||+++.|+|+
T Consensus 404 ~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~ 483 (555)
T 3tbk_A 404 ALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483 (555)
T ss_dssp HHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSC
T ss_pred HHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCH
Confidence 9999998763 344555679999999999999999 999999999999999999999999999999999
Q ss_pred hhHHHhhhhcccCCCCceEEEEeccCcHHHHHHH
Q 015158 360 ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393 (412)
Q Consensus 360 ~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 393 (412)
..|.||+|| ||. .+|.+++++++.+......+
T Consensus 484 ~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 484 IKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp CCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 999999999 998 89999999999877666555
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3.3e-44 Score=361.64 Aligned_cols=331 Identities=18% Similarity=0.207 Sum_probs=207.8
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--ECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
.+|+..|+|+|.++++.++.|+++++.+|||+|||++++++++..+..... ++++||++|+++|+.|+.+.+.++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 346778999999999999999999999999999999999999988765421 568999999999999999999999887
Q ss_pred cCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-CCCCceEEEEeCCchhhccCcHHH-HHHHHHh---
Q 015158 134 LGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-RPDNIRIFVLDEADEMLSRGFKDQ-IYDIFQL--- 208 (412)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iiiDE~h~~~~~~~~~~-~~~i~~~--- 208 (412)
.++.+..++|+............+++|+|+||++|.+.+....+ ...++++||+||||++.+...... +..+...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999998876555555556789999999999999887666 677899999999999886653322 2233322
Q ss_pred -CCCCceEEEEeecCCh-----------HHHHHHHHhcCCCeEEEecCC------ccccCCceEEEEE------------
Q 015158 209 -LPPKIQVGVFSATMPP-----------EALEITRKFMNKPVRILVKRD------ELTLEGIKQFHVN------------ 258 (412)
Q Consensus 209 -~~~~~~~i~~SAT~~~-----------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------------ 258 (412)
..+..+++++||||.. .... +...++.......... ....+........
T Consensus 403 ~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~-l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICS-LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TCCCCCEEEEEESCCCCTTCCSHHHHHHHHHH-HHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred cCCCCCeEEEEcCCccccccccHHHHHHHHHH-HHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 1456889999999952 1111 1111221111100000 0000000000000
Q ss_pred --------------------------ec----------------------------------------------------
Q 015158 259 --------------------------VE---------------------------------------------------- 260 (412)
Q Consensus 259 --------------------------~~---------------------------------------------------- 260 (412)
..
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00
Q ss_pred ------------------------------------------------cchhhHHHHHHHHHh----cCCCcEEEEEcch
Q 015158 261 ------------------------------------------------KEEWKLETLCDLYET----LAITQSVIFVNTR 288 (412)
Q Consensus 261 ------------------------------------------------~~~~~~~~l~~~~~~----~~~~k~lif~~~~ 288 (412)
....+...+.+++.. ...+++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 011233444445543 4568999999999
Q ss_pred hHHHHHHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCEEEEccC
Q 015158 289 RKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDL 355 (412)
Q Consensus 289 ~~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~vi~~~~ 355 (412)
..++.+++.|++. |.....+||+++..+|..++++|++ |+.+|||||+++++|+|+|.+++||+++.
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999874 5566677889999999999999999 99999999999999999999999999999
Q ss_pred CCChhhHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 356 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
|+|+..|+||+|| ||. .+|.++++++..+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 999 8899999998876543
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.4e-42 Score=352.72 Aligned_cols=310 Identities=17% Similarity=0.261 Sum_probs=244.9
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
.++|. |+++|.++++.+.+|+++++.+|||+|||+++++++......+ .+++|++|+++|+.|+++.+.++.. +
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 45676 9999999999999999999999999999999988888766543 5899999999999999999988653 6
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceE
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQV 215 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 215 (412)
..+..++|+.... ...+|+|+||+.|.+.+......+.++++||+||||++.++++...+..++..++++.++
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7788888877533 347999999999999888777667889999999999999998888899999999999999
Q ss_pred EEEeecCChHHHHHHHHhc---CCCeEEEecCCccccCCceEEE------------------------------------
Q 015158 216 GVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFH------------------------------------ 256 (412)
Q Consensus 216 i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 256 (412)
+++|||+++.. ++..++. .....+...... +..+...+
T Consensus 182 IlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r--~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (997)
T 4a4z_A 182 ILLSATVPNTY-EFANWIGRTKQKNIYVISTPKR--PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGA 258 (997)
T ss_dssp EEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSC--SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------
T ss_pred EEEcCCCCChH-HHHHHHhcccCCceEEEecCCC--CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccc
Confidence 99999987542 3333221 122222111111 00111110
Q ss_pred --------------------------------------------------------EEeccchhhHHHHHHHHHhcCCCc
Q 015158 257 --------------------------------------------------------VNVEKEEWKLETLCDLYETLAITQ 280 (412)
Q Consensus 257 --------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~k 280 (412)
............+...+......+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~ 338 (997)
T 4a4z_A 259 PSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLP 338 (997)
T ss_dssp ----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCC
Confidence 000011233556667777777789
Q ss_pred EEEEEcchhHHHHHHHHHhcCCC---------------------------------------eeEEecCCCCHHHHHHHH
Q 015158 281 SVIFVNTRRKVDWLTDKMRSRDH---------------------------------------TVSATHGDMDQNTRDIIM 321 (412)
Q Consensus 281 ~lif~~~~~~~~~~~~~L~~~~~---------------------------------------~~~~~~~~~~~~~r~~~~ 321 (412)
+||||++++.|+.++..|.+.++ .+..+||++++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999987655 478999999999999999
Q ss_pred HHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCC---------ChhhHHHhhhhcccCC--CCceEEEEe
Q 015158 322 REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFG--RKGVAINFV 382 (412)
Q Consensus 322 ~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~g--~~g~~~~~~ 382 (412)
+.|.+|.++|||+|+++++|+|+|+ ..||+.+.+. |..+|.||+||+||.| ..|.|++++
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999999999999999999999 6666666655 9999999999999998 457777777
No 30
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=6.9e-43 Score=355.39 Aligned_cols=331 Identities=18% Similarity=0.218 Sum_probs=205.9
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhhcc
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLV--ECQALVLAPTRELAQQIEKVMRALGDY 133 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~~~~~ 133 (412)
..++..|+++|.++++.++.|+++++.+|||+|||++++++++..+..... +.++||++|+++|+.|+.+++.++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345777999999999999999999999999999999999999887765421 568999999999999999999999887
Q ss_pred cCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC-CCCCceEEEEeCCchhhccCc-HHHHHHHHHh---
Q 015158 134 LGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL-RPDNIRIFVLDEADEMLSRGF-KDQIYDIFQL--- 208 (412)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~-~~~~~~~iiiDE~h~~~~~~~-~~~~~~i~~~--- 208 (412)
.++.+..++|+............+++|+|+||++|.+.+....+ ...++++||+||||++...+. ...+..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999998865443333444679999999999999887666 577899999999999886642 2223333332
Q ss_pred -CCCCceEEEEeecCCh-----------HHHHHHH------------------HhcCCCeEEEecCCccccCC-------
Q 015158 209 -LPPKIQVGVFSATMPP-----------EALEITR------------------KFMNKPVRILVKRDELTLEG------- 251 (412)
Q Consensus 209 -~~~~~~~i~~SAT~~~-----------~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~------- 251 (412)
..+..+++++||||.. ....... .+...+..............
T Consensus 403 ~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~ 482 (936)
T 4a2w_A 403 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 482 (936)
T ss_dssp TCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred cCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHH
Confidence 1456889999999952 1111111 11111111111100000000
Q ss_pred -----------------ceEEE-EEec-----------------------------------------------------
Q 015158 252 -----------------IKQFH-VNVE----------------------------------------------------- 260 (412)
Q Consensus 252 -----------------~~~~~-~~~~----------------------------------------------------- 260 (412)
+.... ....
T Consensus 483 l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~ 562 (936)
T 4a2w_A 483 LMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 562 (936)
T ss_dssp HHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence 00000 0000
Q ss_pred -----------------------------------------------cchhhHHHHHHHHHh----cCCCcEEEEEcchh
Q 015158 261 -----------------------------------------------KEEWKLETLCDLYET----LAITQSVIFVNTRR 289 (412)
Q Consensus 261 -----------------------------------------------~~~~~~~~l~~~~~~----~~~~k~lif~~~~~ 289 (412)
....+...+.+++.. ...+++||||++++
T Consensus 563 ~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~ 642 (936)
T 4a2w_A 563 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 642 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHH
Confidence 011233344455554 34589999999999
Q ss_pred HHHHHHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHHhc-CCCcEEEEcCCCcCCCCCCCCCEEEEccCC
Q 015158 290 KVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVINYDLP 356 (412)
Q Consensus 290 ~~~~~~~~L~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~ 356 (412)
.++.+++.|.+. |.....+||+++..+|.+++++|++ |+++|||+|+++++|+|+|.+++||+++.|
T Consensus 643 ~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p 722 (936)
T 4a2w_A 643 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 722 (936)
T ss_dssp HHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEESCC
T ss_pred HHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCC
Confidence 999999999976 5556667888999999999999999 999999999999999999999999999999
Q ss_pred CChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 357 TQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 357 ~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
+|+..|+||+|| ||. ..|.++++++..+..
T Consensus 723 ~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 723 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp SCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 999999999999 999 789999998886554
No 31
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=7.3e-43 Score=357.60 Aligned_cols=321 Identities=20% Similarity=0.246 Sum_probs=255.4
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
..||. |+++|.++++.+++|+++++++|||||||++++.+++..+. .+.++||++|+++|+.|+.+.+.++. ..+
T Consensus 74 ~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 36885 99999999999999999999999999999988888877663 34589999999999999999999976 668
Q ss_pred cEEEEEEcCcch---HHHHHHhc-CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc-----------cCcHH
Q 015158 136 VKVHACVGGTSV---REDQRILS-SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS-----------RGFKD 200 (412)
Q Consensus 136 ~~~~~~~~~~~~---~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~-----------~~~~~ 200 (412)
+.+..++|+... ......+. +.++|+|+||++|.+++.. +...++++||+||||++.. ++|..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999876 33333344 4589999999999877654 4456899999999997664 56666
Q ss_pred H-HHHHHHhCC-----------CCceEEEEeecC-ChHHH-HHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhH
Q 015158 201 Q-IYDIFQLLP-----------PKIQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKL 266 (412)
Q Consensus 201 ~-~~~i~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (412)
. +..++..++ .+.+++++|||+ +.... ........ +..........++.+.+... .+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~----~k~ 298 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS----RSK 298 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC----CCH
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec----CHH
Confidence 6 778887776 789999999994 43322 22333332 22233333445555555544 245
Q ss_pred HHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeE-EecCCCCHHHHHHHHHHHhcCCCcEEEE----cCCCcCC
Q 015158 267 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARG 341 (412)
Q Consensus 267 ~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~-~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~G 341 (412)
..+.+++.... +++||||++++.++.+++.|++.++.+. .+||. |.+ ++.|++|+.+|||| |+++++|
T Consensus 299 ~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarG 371 (1104)
T 4ddu_A 299 EKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRG 371 (1104)
T ss_dssp HHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCS
T ss_pred HHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEec
Confidence 56667776643 8999999999999999999999999998 99982 555 99999999999999 9999999
Q ss_pred CCCCC-CCEEEEccCCC---------------------------------------------------------------
Q 015158 342 IDVQQ-VSLVINYDLPT--------------------------------------------------------------- 357 (412)
Q Consensus 342 ~d~~~-~~~vi~~~~~~--------------------------------------------------------------- 357 (412)
+|+|+ +++||+++.|.
T Consensus 372 IDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~ 451 (1104)
T 4ddu_A 372 VDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVK 451 (1104)
T ss_dssp CCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEE
T ss_pred CcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEec
Confidence 99999 99999999998
Q ss_pred ---------ChhhHHHhhhhcccCCCCc--eEEEEeccCcHHHHHHHHHHhc
Q 015158 358 ---------QPENYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 358 ---------s~~~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
+...|+||+||+||.|..| .++.++..+|.+.++.+++.++
T Consensus 452 ~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 452 DEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 6778999999999976543 4555555688888888888876
No 32
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=7.1e-43 Score=349.16 Aligned_cols=322 Identities=18% Similarity=0.225 Sum_probs=221.0
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC---CceeEEEEcCCHHHHHHH-HHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VECQALVLAPTRELAQQI-EKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~-~~~~~~~~~~~~~ 136 (412)
+|+++|.++++.++.|+++++.+|||+|||++|++++...+..+. ...++||++|+++|+.|| .+++.++... ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 399999999999999999999999999999999999988765431 125799999999999999 9999998754 47
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHH------HcCCCCCCCceEEEEeCCchhhccC-cHHHHHHHHHhC
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDML------RRQSLRPDNIRIFVLDEADEMLSRG-FKDQIYDIFQLL 209 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~------~~~~~~~~~~~~iiiDE~h~~~~~~-~~~~~~~i~~~~ 209 (412)
.+..++|+..............+|+|+||+.|.+.+ ....+...++++||+||||++.... +...+..+....
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888887655444445567899999999999887 3444667789999999999876433 333333222211
Q ss_pred -------------CCCceEEEEeecCChH-------HHHHHH---HhcCC-CeEEEecC-Cc----cccCCceEEEEEec
Q 015158 210 -------------PPKIQVGVFSATMPPE-------ALEITR---KFMNK-PVRILVKR-DE----LTLEGIKQFHVNVE 260 (412)
Q Consensus 210 -------------~~~~~~i~~SAT~~~~-------~~~~~~---~~~~~-~~~~~~~~-~~----~~~~~~~~~~~~~~ 260 (412)
.+..+++++||||... ....+. ..+.. .+...... .. ...+..........
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~ 245 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADAT 245 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC--
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccc
Confidence 1567899999999862 111111 11111 00000000 00 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 015158 261 -------------------------------------------------------------------------------- 260 (412)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (412)
T Consensus 246 ~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (699)
T 4gl2_A 246 REDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTH 325 (699)
T ss_dssp ---CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------c-------------------------chhh----HHHHHHHHHhcC-CCcEEE
Q 015158 261 ---------------------------K-------------------------EEWK----LETLCDLYETLA-ITQSVI 283 (412)
Q Consensus 261 ---------------------------~-------------------------~~~~----~~~l~~~~~~~~-~~k~li 283 (412)
. ...+ ...+.+.+.... .+++||
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IV 405 (699)
T 4gl2_A 326 LETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGII 405 (699)
T ss_dssp HHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEE
T ss_pred HHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEE
Confidence 0 0001 111222222223 689999
Q ss_pred EEcchhHHHHHHHHHhcC------CCeeEEecCC--------CCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE
Q 015158 284 FVNTRRKVDWLTDKMRSR------DHTVSATHGD--------MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL 349 (412)
Q Consensus 284 f~~~~~~~~~~~~~L~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~ 349 (412)
||++++.++.+++.|++. |+.+..+||+ ++..+|.+++++|++|+.+|||+|+++++|+|+|++++
T Consensus 406 F~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~ 485 (699)
T 4gl2_A 406 FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNI 485 (699)
T ss_dssp ECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCC
T ss_pred EECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCE
Confidence 999999999999999987 8999999999 99999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 350 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 350 vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
||++++|+|+..|.||+||+||.| +.++++....
T Consensus 486 VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 486 VIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred EEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999986654 4444444433
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=5.7e-43 Score=358.73 Aligned_cols=321 Identities=19% Similarity=0.273 Sum_probs=252.1
Q ss_pred HHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhccc
Q 015158 55 YAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYL 134 (412)
Q Consensus 55 ~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 134 (412)
..+||. | ++|.++++.++.|+++++.+|||||||+ +.++++..+.. .+.+++|++|+++|+.|+.+.+..++...
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 347999 9 9999999999999999999999999998 66666655543 34689999999999999999999998877
Q ss_pred Cc----EEEEEEcCcchHHH---HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHH
Q 015158 135 GV----KVHACVGGTSVRED---QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ 207 (412)
Q Consensus 135 ~~----~~~~~~~~~~~~~~---~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~ 207 (412)
++ .+..++|+...... ...+.. ++|+|+||++|...+.+ +.++++||+||||++.++ ...+..++.
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~~~~i~~ 199 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKNVDKLLH 199 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THHHHHHHH
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cccHHHHHH
Confidence 77 88999998876553 233344 89999999999987664 458999999999998884 477777776
Q ss_pred hCC-----------CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhc
Q 015158 208 LLP-----------PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETL 276 (412)
Q Consensus 208 ~~~-----------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 276 (412)
.+. ...+.+++|||++.. ......++..+..+...........+.+.+.. ..+...+.++++..
T Consensus 200 ~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~~ll~~~ 274 (1054)
T 1gku_B 200 LLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLSSILEKL 274 (1054)
T ss_dssp HTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTHHHHTTS
T ss_pred HhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHHHHHhhc
Confidence 663 456789999998875 32222222222222223333334445555442 33455566666665
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEE----cCCCcCCCCCCCC-CEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARGIDVQQV-SLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~----t~~~~~G~d~~~~-~~vi 351 (412)
.+++||||++++.++.+++.|++. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|++ ++||
T Consensus 275 -~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 275 -GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 478999999999999999999988 8999999997 47889999999999999 8999999999995 9999
Q ss_pred EccCC-----------------------------------------------------------------------CChh
Q 015158 352 NYDLP-----------------------------------------------------------------------TQPE 360 (412)
Q Consensus 352 ~~~~~-----------------------------------------------------------------------~s~~ 360 (412)
+++.| .|..
T Consensus 348 ~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 427 (1054)
T 1gku_B 348 FVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLR 427 (1054)
T ss_dssp EESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHH
T ss_pred EeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHH
Confidence 99999 7899
Q ss_pred hHHHhhhhcccCCCCc--eEEEEeccCcHHHHHHHHHHhcc
Q 015158 361 NYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYNV 399 (412)
Q Consensus 361 ~~~Q~~GR~~R~g~~g--~~~~~~~~~~~~~~~~~~~~~~~ 399 (412)
.|+||+||+||.|..| .+++++...+.+.+..+++.++.
T Consensus 428 ~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 428 TYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 9999999999988776 48888888899999999988884
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-42 Score=340.15 Aligned_cols=326 Identities=18% Similarity=0.243 Sum_probs=242.2
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcC------ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHH
Q 015158 48 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG------LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQ 121 (412)
Q Consensus 48 ~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~------~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 121 (412)
+.+...+...+| +|+++|+++++.+.++ .+.++++|||||||.+++++++..+..+ .+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g---~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCcHHHHH
Confidence 445556677899 6999999999998875 5899999999999999999999887654 48999999999999
Q ss_pred HHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 122 QIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 122 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
|+.+.+.++....++.+..++|+....... ....+.++|+|+||+.+.. ...+.++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999999887789999999988765432 2234568999999988754 3456789999999999853221
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh-c
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-L 276 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 276 (412)
...+.....+.++++|||||.+...... .++................+..... . ......+.+.+.. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~---~-~~~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLV---P-MDRVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCC---C-SSTHHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEe---c-cchHHHHHHHHHHHH
Confidence 1122223346889999999977544433 2332211111111111122222111 1 1223333344433 2
Q ss_pred -CCCcEEEEEcch--------hHHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCC
Q 015158 277 -AITQSVIFVNTR--------RKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 344 (412)
Q Consensus 277 -~~~k~lif~~~~--------~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~ 344 (412)
.+++++|||+.. ..++.+++.|.+ .+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDi 655 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 655 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccC
Confidence 457899999965 457888999988 46789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCC-ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHH
Q 015158 345 QQVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 393 (412)
Q Consensus 345 ~~~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~ 393 (412)
|++++||+++.|. +...+.|++||+||.|.+|.|++++++.+......+
T Consensus 656 P~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 656 PRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp TTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9999999999885 789999999999999999999999985444433333
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.4e-40 Score=343.00 Aligned_cols=321 Identities=17% Similarity=0.214 Sum_probs=247.2
Q ss_pred CCCHHHHHHH-HHCCCCCChHHHHhhhhhhhc----Cc--cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 45 GLQENLLRGI-YAYGFEKPSAIQQRGIVPFCK----GL--DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 45 ~l~~~~~~~l-~~~~~~~l~~~Q~~a~~~~~~----~~--~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
+.+....+.+ ..++|. ++|+|.++++.++. ++ ++++++|||+|||.+++.+++.....+ .+++|++||+
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g---~~vlvlvPt~ 662 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH---KQVAVLVPTT 662 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT---CEEEEECSSH
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC---CeEEEEechH
Confidence 4455555555 446887 79999999999886 55 899999999999999988887765543 4899999999
Q ss_pred HHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH----HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 118 ELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ----RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+|+.|+.+.+.++....++.+..+++........ ....+..+|+|+|++.+. ....+.++++||+||+|++
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~ 737 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF 737 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc
Confidence 9999999999988777778888888765544332 223456899999998663 3455688999999999994
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHH
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLY 273 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 273 (412)
.......+..++.+.+++++||||.+...............+ .........+......... ......++
T Consensus 738 -----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i--~~~~~~r~~i~~~~~~~~~----~~i~~~il 806 (1151)
T 2eyq_A 738 -----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII--ATPPARRLAVKTFVREYDS----MVVREAIL 806 (1151)
T ss_dssp -----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEEC--CCCCCBCBCEEEEEEECCH----HHHHHHHH
T ss_pred -----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEE--ecCCCCccccEEEEecCCH----HHHHHHHH
Confidence 233445555566788999999999876655554443332221 1111222233443333322 12222233
Q ss_pred Hhc-CCCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEE
Q 015158 274 ETL-AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 350 (412)
Q Consensus 274 ~~~-~~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~v 350 (412)
... .+++++|||++++.++.+++.|++. +..+..+||+++..+|.+++++|.+|+.+|||||+++++|+|+|++++|
T Consensus 807 ~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~V 886 (1151)
T 2eyq_A 807 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 886 (1151)
T ss_dssp HHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEE
T ss_pred HHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEE
Confidence 332 4579999999999999999999887 7889999999999999999999999999999999999999999999999
Q ss_pred EEccC-CCChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 351 INYDL-PTQPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 351 i~~~~-~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
|+.+. +++..++.|++||+||.|+.|.|++++++.
T Consensus 887 Ii~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 887 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 98877 579999999999999999999999998764
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2e-40 Score=350.84 Aligned_cols=340 Identities=18% Similarity=0.204 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 46 LQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 46 l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
+.....+.+...+|..++|.|.++++.++. ++++++.+|||||||+++.++++..+... .+.+++|++|+++|+.|.+
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHH
Confidence 445666777777899999999999999975 57899999999999999999999888654 3458999999999999999
Q ss_pred HHHHH-hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCC--CCCceEEEEeCCchhhccCcHHH
Q 015158 125 KVMRA-LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLR--PDNIRIFVLDEADEMLSRGFKDQ 201 (412)
Q Consensus 125 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~--~~~~~~iiiDE~h~~~~~~~~~~ 201 (412)
+.+.+ +....+..+..++|+...... ...+++|+|+||++|..++.++... ++++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99876 555678899999998664322 2234689999999998777654332 467899999999988764 4444
Q ss_pred HHHHH-------HhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhh------HHH
Q 015158 202 IYDIF-------QLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWK------LET 268 (412)
Q Consensus 202 ~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 268 (412)
+..++ ...+++.|+|++|||+++ ..+...++...............+..+............. ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 44333 345678999999999974 3455555543333333333333343444444444332211 122
Q ss_pred HHHHHHh-cCCCcEEEEEcchhHHHHHHHHHhcC----------------------------------CCeeEEecCCCC
Q 015158 269 LCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSR----------------------------------DHTVSATHGDMD 313 (412)
Q Consensus 269 l~~~~~~-~~~~k~lif~~~~~~~~~~~~~L~~~----------------------------------~~~~~~~~~~~~ 313 (412)
+...+.. ...+++||||++++.|+.++..|... ...+..+|++++
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 2333333 45689999999999998887766321 235889999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEc----------cCCCChhhHHHhhhhcccCCC--CceEEEE
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----------DLPTQPENYLHRIGRSGRFGR--KGVAINF 381 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~----------~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~ 381 (412)
+.+|..+++.|++|.++|||||++++.|+|+|...+||.- ..|.+..+|.||+||+||.|. .|.|+++
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 9999999999999999999999999999999988777731 235789999999999999986 6889999
Q ss_pred eccCcHHHHH
Q 015158 382 VTRDDERMLF 391 (412)
Q Consensus 382 ~~~~~~~~~~ 391 (412)
+.+.+...++
T Consensus 1305 ~~~~~~~~~~ 1314 (1724)
T 4f92_B 1305 CQGSKKDFFK 1314 (1724)
T ss_dssp EEGGGHHHHH
T ss_pred ecchHHHHHH
Confidence 8887776543
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-41 Score=327.69 Aligned_cols=309 Identities=17% Similarity=0.148 Sum_probs=230.4
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
+|+++|.++++.+++++++++++|||+|||.+++.++...+..+ ..++||++|+++|+.||.+.+.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 59999999999999999999999999999999988888766533 2489999999999999999999886555567777
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
++++...... .....+|+|+|++.+... ....+.++++||+||||++.. ..+..++..+++..+++++||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 7777654432 345689999999977542 223356789999999999765 456677777877889999999
Q ss_pred cCChHHHHH--HHHhcCCCeEEEecCC------ccccCCceEEEEEeccc--------------------hhhHHHHHHH
Q 015158 221 TMPPEALEI--TRKFMNKPVRILVKRD------ELTLEGIKQFHVNVEKE--------------------EWKLETLCDL 272 (412)
Q Consensus 221 T~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~~~~l~~~ 272 (412)
||+...... ...+++. ........ ...+..+.......+.. ..+...+.++
T Consensus 261 Tp~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (510)
T 2oca_A 261 SLRDGKANIMQYVGMFGE-IFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKL 339 (510)
T ss_dssp CGGGCSSCHHHHHHHHCS-EECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCCcccHHHhHHhhCC-eEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHH
Confidence 996543221 1122222 11111111 11111122222222110 1122334444
Q ss_pred HHhc---CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc-CCCcCCCCCCCCC
Q 015158 273 YETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDVQQVS 348 (412)
Q Consensus 273 ~~~~---~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t-~~~~~G~d~~~~~ 348 (412)
+... ...+++|||+ .+.++.+++.|.+.+..+..+||+++..+|.++++.|.+|+.+|||+| +++++|+|+|+++
T Consensus 340 l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~ 418 (510)
T 2oca_A 340 AIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLH 418 (510)
T ss_dssp HHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEE
T ss_pred HHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCc
Confidence 4443 2344555555 899999999999988899999999999999999999999999999999 9999999999999
Q ss_pred EEEEccCCCChhhHHHhhhhcccCCCCceEEEEec
Q 015158 349 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383 (412)
Q Consensus 349 ~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 383 (412)
+||+++.|+|...|.|++||+||.|+.+.++++++
T Consensus 419 ~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 419 HVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 99999999999999999999999998875555554
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.4e-40 Score=350.23 Aligned_cols=330 Identities=18% Similarity=0.278 Sum_probs=244.2
Q ss_pred CCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccC--------CCceeEEEEcCCHHHHHHHHHHHH
Q 015158 58 GFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYG--------LVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~--------~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
||..|++.|.++++.++. ++|+++++|||||||+++.++++..+... ..+.+++|++|+++|+.|..+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 788999999999999774 78999999999999999999999887542 235689999999999999999999
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCC--CCCCceEEEEeCCchhhccCcHHHHHHHH
Q 015158 129 ALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSL--RPDNIRIFVLDEADEMLSRGFKDQIYDIF 206 (412)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~--~~~~~~~iiiDE~h~~~~~~~~~~~~~i~ 206 (412)
+.....|+.+..++|+...... ...+++|+|+|||++..++.+... .++.+++||+||+|.+.+ ..+..+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 9888889999999998765332 124579999999999766654332 246899999999997765 4454444433
Q ss_pred -------HhCCCCceEEEEeecCChHHHHHHHHhcCCCe-EEEecCCccccCCceEEEEEeccch--hhH----HHHHHH
Q 015158 207 -------QLLPPKIQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFHVNVEKEE--WKL----ETLCDL 272 (412)
Q Consensus 207 -------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~l~~~ 272 (412)
..++++.|+|++|||+++ ..+...++...+. ..........+..+...+....... ... ..+.+.
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 345678999999999975 3344443332211 1111222222333444443333221 111 222233
Q ss_pred HHhc-CCCcEEEEEcchhHHHHHHHHHhcC-------------------------------------CCeeEEecCCCCH
Q 015158 273 YETL-AITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQ 314 (412)
Q Consensus 273 ~~~~-~~~k~lif~~~~~~~~~~~~~L~~~-------------------------------------~~~~~~~~~~~~~ 314 (412)
+... ..+++||||++++.|+.+++.|.+. ...+.++||+++.
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 3332 4578999999999999888877531 2348899999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----cc------CCCChhhHHHhhhhcccCCC--CceEEEEe
Q 015158 315 NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRFGR--KGVAINFV 382 (412)
Q Consensus 315 ~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~ 382 (412)
.+|..+++.|++|.++|||||++++.|+|+|..++||. ++ .|.+..+|.||+|||||.|. .|.++++.
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~ 470 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILIT 470 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEe
Confidence 99999999999999999999999999999998888874 22 35689999999999999874 68999998
Q ss_pred ccCcHHHHHH
Q 015158 383 TRDDERMLFD 392 (412)
Q Consensus 383 ~~~~~~~~~~ 392 (412)
.+.+...+..
T Consensus 471 ~~~~~~~~~~ 480 (1724)
T 4f92_B 471 SHGELQYYLS 480 (1724)
T ss_dssp ESTTCCHHHH
T ss_pred cchhHHHHHH
Confidence 8877655433
No 39
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.2e-40 Score=316.05 Aligned_cols=292 Identities=19% Similarity=0.256 Sum_probs=219.9
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE-EE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK-VH 139 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~ 139 (412)
+|+++|.++++.+.+++++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 4999999999999999999999999999999998887754 247999999999999999998884 667 77
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
.++|+... ..+|+|+|++.+....... ..++++||+||+|++.+..+.. +...+ +..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 77776542 4689999999987765421 2458999999999998877653 44444 467899999
Q ss_pred ecCChHH--HHHHHHhcCCCeEEEecCCccc---cCCceE--EEEEe---------------------------------
Q 015158 220 ATMPPEA--LEITRKFMNKPVRILVKRDELT---LEGIKQ--FHVNV--------------------------------- 259 (412)
Q Consensus 220 AT~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~--------------------------------- 259 (412)
|||.... ...+..+++.. .......... ...... .....
T Consensus 226 ATp~~~~~~~~~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (472)
T 2fwr_A 226 ATFEREDGRHEILKEVVGGK-VFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304 (472)
T ss_dssp SCCCCTTSGGGSHHHHTCCE-EEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSST
T ss_pred cCccCCCCHHHHHHHHhCCe-EeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHH
Confidence 9997310 00111111111 0000000000 000000 00000
Q ss_pred --------------------------ccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 260 --------------------------EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 260 --------------------------~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
.....+...+.+++.....+++||||++.+.++.+++.|. +..+||+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~ 379 (472)
T 2fwr_A 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTS 379 (472)
T ss_dssp TTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSC
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCC
Confidence 0122356777888888778999999999999999999984 667899999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCC-ceEEE--EeccC
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK-GVAIN--FVTRD 385 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~-g~~~~--~~~~~ 385 (412)
..+|.++++.|++|+.+|||+|+++++|+|+|++++||+++.|+|+..|.|++||+||.|+. +.+++ +++.+
T Consensus 380 ~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 380 REEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred HHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999865 44444 44443
No 40
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.7e-39 Score=311.08 Aligned_cols=322 Identities=18% Similarity=0.212 Sum_probs=240.8
Q ss_pred HCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC
Q 015158 56 AYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG 135 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 135 (412)
..|+ .|++.|..+++.+++|+ +..++||+|||++|.++++..... +..++|++||+.|+.|.++++..++...+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4699 79999999999999998 899999999999999999843332 34799999999999999999999998889
Q ss_pred cEEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCCCceEEEEeCCchhh-ccC----------
Q 015158 136 VKVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPDNIRIFVLDEADEML-SRG---------- 197 (412)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iiiDE~h~~~-~~~---------- 197 (412)
+.+..+.|+.+.... ....+++|+|+||..| +.++... ...++.+.++|+||||.++ +.+
T Consensus 153 l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 999999998765433 2334579999999999 5555432 3456789999999999987 543
Q ss_pred -----cHHHHHHHHHhCCC---------CceEE-----------------EEeecCCh---HHHHHH--HHhcCC-C-eE
Q 015158 198 -----FKDQIYDIFQLLPP---------KIQVG-----------------VFSATMPP---EALEIT--RKFMNK-P-VR 239 (412)
Q Consensus 198 -----~~~~~~~i~~~~~~---------~~~~i-----------------~~SAT~~~---~~~~~~--~~~~~~-~-~~ 239 (412)
+...+..+...+++ ..++. ++|||.+. .+...+ ..++.. . ..
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 55777888887763 44454 67888542 111111 111110 0 00
Q ss_pred E------Ee-----------------------------cCC---------------------------------------
Q 015158 240 I------LV-----------------------------KRD--------------------------------------- 245 (412)
Q Consensus 240 ~------~~-----------------------------~~~--------------------------------------- 245 (412)
+ .+ ...
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 0 00 000
Q ss_pred -----ccccCCce--EEEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHH
Q 015158 246 -----ELTLEGIK--QFHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNT 316 (412)
Q Consensus 246 -----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 316 (412)
....+... ...........+...+.+.+... ...++||||+|++.++.+++.|++.|+.+..+||++...+
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rE 470 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE 470 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHH
Confidence 00000010 01112223456777777766542 4568999999999999999999999999999999988777
Q ss_pred HHHHHHHHhcCCCcEEEEcCCCcCCCCCC--------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 317 RDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 317 r~~~~~~f~~g~~~vlv~t~~~~~G~d~~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
+..+.+.++. ..|+|||+++++|+|++ ++.+||.++.|.|...|.||+||+||.|.+|.++.|++..|.
T Consensus 471 r~ii~~ag~~--g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 471 AQIIEEAGQK--GAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp HHHHTTTTST--TCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred HHHHHHcCCC--CeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 7655554444 46999999999999999 788999999999999999999999999999999999988764
No 41
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2e-40 Score=321.33 Aligned_cols=321 Identities=18% Similarity=0.133 Sum_probs=232.4
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHH
Q 015158 44 MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQI 123 (412)
Q Consensus 44 ~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 123 (412)
+++++.+.+.+... ...+.|.|..+++.+.+++++++.+|||||||++|+++++..+.. .+.++||++|+++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHH
Confidence 45666666655532 366788888889999999999999999999999998888877654 346899999999999999
Q ss_pred HHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHH
Q 015158 124 EKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
.+.+.. ..+. +.+.. . ......+..+.++|.+.+.+.+... ..+.++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~-l---~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPA-V---KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTT-S---SCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eeccc-c---eeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987763 2232 21111 0 0112234567788988887766554 34678999999999997 555666666
Q ss_pred HHHHhCC-CCceEEEEeecCChHHHHHHHHhcC-CCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcE
Q 015158 204 DIFQLLP-PKIQVGVFSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQS 281 (412)
Q Consensus 204 ~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~ 281 (412)
.+...++ ++.+++++|||++..... +.. .+..+..... .+. .....+...+.. ..+++
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~----~~~~~~~~~~v~~~-------------~~~--~~~~~ll~~l~~-~~~~~ 358 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDP----FPQSNSPIEDIERE-------------IPE--RSWNTGFDWITD-YQGKT 358 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCS----SCCCSSCEEEEECC-------------CCS--SCCSSSCHHHHH-CCSCE
T ss_pred HHHHHhcccCccEEEEECCCchhhhh----hhccCCceeeeccc-------------CCH--HHHHHHHHHHHh-CCCCE
Confidence 6666654 678999999999765321 211 2222221111 010 011112222333 25799
Q ss_pred EEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEE-----------
Q 015158 282 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV----------- 350 (412)
Q Consensus 282 lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~v----------- 350 (412)
||||++++.++.+++.|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++|
T Consensus 359 LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~ 433 (618)
T 2whx_A 359 VWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVI 433 (618)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEE
T ss_pred EEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceeccee
Confidence 999999999999999999999999999985 688899999999999999999999999997 8888
Q ss_pred ---------EEccCCCChhhHHHhhhhcccCCC-CceEEEEec---cCcHHHHHHHHHHhccccccCC
Q 015158 351 ---------INYDLPTQPENYLHRIGRSGRFGR-KGVAINFVT---RDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 351 ---------i~~~~~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
++++.|.|..+|+||+||+||.|. .|.+++|++ +.+...+..+++.+......++
T Consensus 434 ~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~ 501 (618)
T 2whx_A 434 LTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTP 501 (618)
T ss_dssp ECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCT
T ss_pred cccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCC
Confidence 555668999999999999999965 899999997 7788888888887765444443
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.3e-38 Score=316.22 Aligned_cols=336 Identities=16% Similarity=0.212 Sum_probs=244.2
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhc-CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK-GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~-~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
.+..+|+++++++.+.+.+...+ ..|.+.|++++..++. ++++++.+|||+|||+.....+.........+.++++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecC
Confidence 34678999999999999999888 5588888888887665 578999999999999843333322221111245799999
Q ss_pred CCHHHHHHHHHHHHHhhc-ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch-
Q 015158 115 PTRELAQQIEKVMRALGD-YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE- 192 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~- 192 (412)
|+++|+.|+.+.+..... ..+..+........ ......+|+++|++.+.+.+... ..+.++++||+||+|.
T Consensus 148 P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R 220 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHER 220 (773)
T ss_dssp SCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGC
T ss_pred chHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcccc
Confidence 999999999887765432 22223322211111 11245789999999999877654 3467899999999996
Q ss_pred hhccCc-HHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhh---HHH
Q 015158 193 MLSRGF-KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWK---LET 268 (412)
Q Consensus 193 ~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 268 (412)
..+.+. ...+..+.... ++.+++++|||++.+ .+..+++....+...... ..+...+......... ...
T Consensus 221 ~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~ 293 (773)
T 2xau_A 221 TLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRT 293 (773)
T ss_dssp CHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhC-CCceEEEEeccccHH---HHHHHhcCCCcccccCcc---cceEEEEecCCchhHHHHHHHH
Confidence 443322 23344444433 578999999999642 344455544444433222 2233333333222222 233
Q ss_pred HHHHHHhcCCCcEEEEEcchhHHHHHHHHHhc-----------CCCeeEEecCCCCHHHHHHHHHHHh-----cCCCcEE
Q 015158 269 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-----------RDHTVSATHGDMDQNTRDIIMREFR-----SGSSRVL 332 (412)
Q Consensus 269 l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~-----------~~~~~~~~~~~~~~~~r~~~~~~f~-----~g~~~vl 332 (412)
+..+......+++||||++++.++.+++.|.+ .+..+..+||+++..+|..+++.|. +|+.+||
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 34444444678999999999999999999975 5778999999999999999999999 9999999
Q ss_pred EEcCCCcCCCCCCCCCEEEEccC------------------CCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 333 ITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 333 v~t~~~~~G~d~~~~~~vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
|||+++++|+|+|++++||+++. |.|..+|.||+||+||. .+|.|+.++++.+.
T Consensus 374 VAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 ISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 99999999999999999999887 88999999999999999 78999999977654
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2e-38 Score=298.80 Aligned_cols=287 Identities=18% Similarity=0.135 Sum_probs=208.3
Q ss_pred CCCCChHHHHhhhhhhhcCccE-EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDV-IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~-lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
|+.+++|.|+ +++.++++++. ++.+|||||||++++++++..... .+.+++|++|+++|+.|+.+.+.. .
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g------~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRG------L 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT------S
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcC------c
Confidence 5677899985 78998888776 889999999999988888766543 236899999999999999987753 2
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHH-HhCCCCceE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIF-QLLPPKIQV 215 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~-~~~~~~~~~ 215 (412)
.+......... ....+..|.++|++.+.+.+.+. ..+.++++||+||||++ +..+...+..+. ...+++.++
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33222211110 12234578999999998777654 34678999999999976 332222222222 223457899
Q ss_pred EEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHH
Q 015158 216 GVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLT 295 (412)
Q Consensus 216 i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~ 295 (412)
+++|||++..... .....+..+...... +.. ....+...+.. ..+++||||++++.++.++
T Consensus 145 i~~SAT~~~~~~~---~~~~~~~~~~~~~~~-------------p~~--~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDP---FPQSNSPIEDIEREI-------------PER--SWNTGFDWITD-YQGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCS---SCCCSSCEEEEECCC-------------CSS--CCSSSCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchh---hhcCCCceEecCccC-------------Cch--hhHHHHHHHHh-CCCCEEEEcCCHHHHHHHH
Confidence 9999999763221 112222222221100 000 00011222333 2469999999999999999
Q ss_pred HHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEcc--------------------C
Q 015158 296 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------L 355 (412)
Q Consensus 296 ~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~--------------------~ 355 (412)
+.|++.+..+..+|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .
T Consensus 206 ~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~ 280 (451)
T 2jlq_A 206 NCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPI 280 (451)
T ss_dssp HHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEE
T ss_pred HHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccc
Confidence 999999999999999753 57899999999999999999999999999 9999988 8
Q ss_pred CCChhhHHHhhhhcccCCC-CceEEEEecc
Q 015158 356 PTQPENYLHRIGRSGRFGR-KGVAINFVTR 384 (412)
Q Consensus 356 ~~s~~~~~Q~~GR~~R~g~-~g~~~~~~~~ 384 (412)
|.|..+|.||+||+||.|. +|.++++...
T Consensus 281 p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 281 PVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999999999999999998 7888888744
No 44
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=8.3e-39 Score=312.92 Aligned_cols=313 Identities=16% Similarity=0.206 Sum_probs=198.3
Q ss_pred CChHHHHhhhhhhhc-----CccEEEECCCCCCchhHhHHHHHHhhccC------CCceeEEEEcCCHHHHHHHH-HHHH
Q 015158 61 KPSAIQQRGIVPFCK-----GLDVIQQAQSGTGKTATFCSGILQQLDYG------LVECQALVLAPTRELAQQIE-KVMR 128 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~-----~~~~lv~~~tGsGKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~-~~~~ 128 (412)
.|+++|.++++.+.+ ++++++++|||+|||++++..+...+..+ ...+++||++|+++|+.|+. +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999999876 46789999999999999766655444332 14578999999999999999 7776
Q ss_pred HhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc----CCCCCCCceEEEEeCCchhhccCcHHHHHH
Q 015158 129 ALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR----QSLRPDNIRIFVLDEADEMLSRGFKDQIYD 204 (412)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~----~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 204 (412)
.+. ..+..+.++. ...+.+|+|+|+++|...... ..+....+++||+||||++.... ...+..
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 653 2333333221 234679999999999876541 23445678999999999986542 245566
Q ss_pred HHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccc---cCCceEEEEEec---------------------
Q 015158 205 IFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT---LEGIKQFHVNVE--------------------- 260 (412)
Q Consensus 205 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--------------------- 260 (412)
++..++ +.+++++||||..........+++.+........... ............
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 666665 4679999999986544445555554443321111000 000000000000
Q ss_pred -------cc------hhh----HHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCC--------eeEEecCCCCH
Q 015158 261 -------KE------EWK----LETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDH--------TVSATHGDMDQ 314 (412)
Q Consensus 261 -------~~------~~~----~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~~ 314 (412)
.. ... ...+.+.+... ..+++||||+++++++.+++.|.+.+. .+..+||.++
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~- 482 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG- 482 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-
Confidence 00 001 12233334443 447999999999999999999987543 2677888865
Q ss_pred HHHHHHHHHHhcCCCc---EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCC--CceEEEEeccC-cHH
Q 015158 315 NTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DER 388 (412)
Q Consensus 315 ~~r~~~~~~f~~g~~~---vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~--~g~~~~~~~~~-~~~ 388 (412)
++|..++++|++|+.+ |+++|+++++|+|+|.+++||+++.++|...|.||+||++|.++ .+..+++++.. ...
T Consensus 483 ~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~g~~~ 562 (590)
T 3h1t_A 483 KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYTGSAT 562 (590)
T ss_dssp HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECSSSHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecCCcHH
Confidence 4799999999998765 88889999999999999999999999999999999999999875 34444444443 443
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.8e-37 Score=299.16 Aligned_cols=322 Identities=18% Similarity=0.209 Sum_probs=223.1
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|. .|++.|..+++.+++|+ +..++||+|||+++.++++..... +..++|++||+.|+.|.++.+..++...++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 466 49999999999999998 899999999999999999854433 347999999999999999999999998999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCCCceEEEEeCCchhh-ccC-----------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPDNIRIFVLDEADEML-SRG----------- 197 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iiiDE~h~~~-~~~----------- 197 (412)
++..+.|+.+... .....+++|+|+||..| +.++... ....+++.++|+||||.++ +.+
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999877543 23334589999999999 6666543 2456889999999999987 432
Q ss_pred ----cHHHHHHHHHhCCC--------------------CceEE------------------------EEeecCCh---HH
Q 015158 198 ----FKDQIYDIFQLLPP--------------------KIQVG------------------------VFSATMPP---EA 226 (412)
Q Consensus 198 ----~~~~~~~i~~~~~~--------------------~~~~i------------------------~~SAT~~~---~~ 226 (412)
+...+..+...+++ ..++. ++|||.+. .+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 45566677766653 22332 67888542 11
Q ss_pred HHHH--HHhcCCC-------------------------------------eEEEecCCccccCCce--------------
Q 015158 227 LEIT--RKFMNKP-------------------------------------VRILVKRDELTLEGIK-------------- 253 (412)
Q Consensus 227 ~~~~--~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~-------------- 253 (412)
...+ ..++... ..+.+.........+.
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 1000 0011000 0011111110000000
Q ss_pred --------------------------------EEEEEeccchhhHHHHHHHHHh-c-CCCcEEEEEcchhHHHHHHHHHh
Q 015158 254 --------------------------------QFHVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTRRKVDWLTDKMR 299 (412)
Q Consensus 254 --------------------------------~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~~~~~~~~~~L~ 299 (412)
...........+...+.+.+.. + ...++||||+|++.++.+++.|+
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~ 462 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELT 462 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHH
Confidence 0001122335577777777754 2 45789999999999999999999
Q ss_pred cCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCC--------------------------------
Q 015158 300 SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------- 347 (412)
Q Consensus 300 ~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~-------------------------------- 347 (412)
+.|+.+.++||++...++..+.+.|+.| .|+|+|+++++|+|++..
T Consensus 463 ~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 540 (853)
T 2fsf_A 463 KAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAV 540 (853)
T ss_dssp HTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHH
Confidence 9999999999998888887788878776 699999999999999863
Q ss_pred -----CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 348 -----SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 348 -----~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
.+||.++.|.|...|.|++||+||.|.+|.++.|++..|..
T Consensus 541 ~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~l 586 (853)
T 2fsf_A 541 LEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDAL 586 (853)
T ss_dssp HHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSGG
T ss_pred HhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHHH
Confidence 59999999999999999999999999999999999887743
No 46
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.9e-38 Score=309.17 Aligned_cols=307 Identities=21% Similarity=0.183 Sum_probs=216.1
Q ss_pred CChHHHH-----hhhhhhh------cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 61 KPSAIQQ-----RGIVPFC------KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 61 ~l~~~Q~-----~a~~~~~------~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
.|++.|+ ++++.++ +++++++.+|||||||++|+++++..+.. .+.+++|++||++|+.|+.+.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHHHHHHHHHHHHhc
Confidence 7899999 9999888 89999999999999999999988877544 336899999999999999988875
Q ss_pred hhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC
Q 015158 130 LGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL 209 (412)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~ 209 (412)
+ ++. ...+. .......+.-+-+.+...+.+.+... ..+.++++||+||+|++ +..+...+..+...+
T Consensus 293 ~----~i~--~~~~~-----l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 293 L----PVR--YLTPA-----VQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRV 359 (673)
T ss_dssp S----CCE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHH
T ss_pred C----Cee--eeccc-----ccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhc
Confidence 4 222 11110 00011222345566777776665553 45678999999999997 222222333333333
Q ss_pred -CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcch
Q 015158 210 -PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 288 (412)
Q Consensus 210 -~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~ 288 (412)
+.+.++++||||+++.... +... ...+......... ......+ ..+.. ..+++||||+++
T Consensus 360 ~~~~~~vl~~SAT~~~~i~~----~~~~------------~~~i~~v~~~~~~-~~~~~~l-~~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 360 EAGEAAAIFMTATPPGTSDP----FPDT------------NSPVHDVSSEIPD-RAWSSGF-EWITD-YAGKTVWFVASV 420 (673)
T ss_dssp HTTSCEEEEECSSCTTCCCS----SCCC------------SSCEEEEECCCCS-SCCSSCC-HHHHS-CCSCEEEECSSH
T ss_pred cccCCcEEEEcCCCChhhhh----hccc------------CCceEEEeeecCH-HHHHHHH-HHHHh-CCCCEEEEECCH
Confidence 2578999999999754211 1110 0011111111111 1111111 22222 457999999999
Q ss_pred hHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----------------
Q 015158 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN---------------- 352 (412)
Q Consensus 289 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~---------------- 352 (412)
+.++.+++.|++.+..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 421 ~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r 495 (673)
T 2wv9_A 421 KMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGR 495 (673)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCE
T ss_pred HHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeeccccc
Confidence 99999999999999999999994 789999999999999999999999999999 999997
Q ss_pred ----ccCCCChhhHHHhhhhcccC-CCCceEEEEe---ccCcHHHHHHHHHHhccccccCCh
Q 015158 353 ----YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 353 ----~~~~~s~~~~~Q~~GR~~R~-g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
++.|.+..+|.||+||+||. |+.|.|++|+ ++.+...+..++..+......+++
T Consensus 496 ~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 496 VILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp EEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTT
T ss_pred ceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCc
Confidence 45788999999999999999 7899999996 567777777777766443333333
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.4e-38 Score=305.41 Aligned_cols=293 Identities=20% Similarity=0.221 Sum_probs=217.4
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
.++++|+.++..+.+++++++.+|||||||.++.++++.. +.+++|++|+++|+.|+++.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 3677888888888899999999999999999998877752 3489999999999999998776654 445556
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCce--EEEE
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQ--VGVF 218 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~--~i~~ 218 (412)
..|+.. ...+.+|+|+||++| +.+..+...++++||+||+|. .+.++...+..++..++...+ ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 666543 345679999999998 355667778899999999986 455567778888888876554 7888
Q ss_pred eecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHH
Q 015158 219 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKM 298 (412)
Q Consensus 219 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L 298 (412)
|||++.... ...+......... ...... ... ... +.....+++||||++++.++.+++.|
T Consensus 357 SAT~~~~i~------~~~p~i~~v~~~~---~~~i~~---~~~-~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 357 TATPPGSVT------VPHPNIEEVALSN---TGEIPF---YGK-AIP-------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp ESSCTTCCC------CCCTTEEEEECBS---CSSEEE---TTE-EEC-------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCCCcccc------cCCcceEEEeecc---cchhHH---HHh-hhh-------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 999986310 1111111110000 000000 000 000 12335689999999999999999999
Q ss_pred hcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE----------cc-----------CCC
Q 015158 299 RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----------YD-----------LPT 357 (412)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~----------~~-----------~~~ 357 (412)
++.++.+..+||++++.+ |.++..+|||+|+++++|+|++ +++||+ ++ .|.
T Consensus 417 ~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~ 488 (666)
T 3o8b_A 417 SGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQ 488 (666)
T ss_dssp HTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEEC
T ss_pred HhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcC
Confidence 999999999999998764 4556679999999999999997 999985 44 789
Q ss_pred ChhhHHHhhhhcccCCCCceEEEEeccCcHHH--H--HHHHHHhcccccc
Q 015158 358 QPENYLHRIGRSGRFGRKGVAINFVTRDDERM--L--FDIQKFYNVVIEE 403 (412)
Q Consensus 358 s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 403 (412)
|..+|+||+||+|| |.+|. +.|+++.+... + ..+++.++...++
T Consensus 489 s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 489 DAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp BHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 99999999999999 89999 88988876554 3 5555555544443
No 48
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=3.7e-36 Score=290.44 Aligned_cols=323 Identities=20% Similarity=0.268 Sum_probs=245.2
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+ .|++.|..+++.+++|+ +..++||+|||+++.++++.....+ ..++|++||+.|+.|.++.+..++...++
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g---~~v~VvTpTreLA~Qdae~m~~l~~~lGL 181 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAG---NGVHIVTVNDYLAKRDSEWMGRVHRFLGL 181 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTT---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhC---CCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 488 69999999999999998 9999999999999999996443333 47999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCCCceEEEEeCCchhh-cc------------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPDNIRIFVLDEADEML-SR------------ 196 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~~~~~iiiDE~h~~~-~~------------ 196 (412)
++.++.|+.+.... .....++|+|+||..| +.++... ....+.+.++|+||||.++ +.
T Consensus 182 sv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 182 QVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp CEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred eEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 99999998774433 2333579999999998 6666543 3556789999999999987 42
Q ss_pred ---CcHHHHHHHHHhCC---------CCceEE-----------------EEeecCCh---HHHHHH--HHhcCCC-----
Q 015158 197 ---GFKDQIYDIFQLLP---------PKIQVG-----------------VFSATMPP---EALEIT--RKFMNKP----- 237 (412)
Q Consensus 197 ---~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~---~~~~~~--~~~~~~~----- 237 (412)
++...+..+...++ +..++. ++|||.+. .+...+ ..++...
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 36678889999997 566777 78899753 222211 1122111
Q ss_pred ---eEEEecC-----------------------------Cccc-------------------------------------
Q 015158 238 ---VRILVKR-----------------------------DELT------------------------------------- 248 (412)
Q Consensus 238 ---~~~~~~~-----------------------------~~~~------------------------------------- 248 (412)
..+.+.. ....
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 1111110 0000
Q ss_pred -------cCCceE--EEEEeccchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHH
Q 015158 249 -------LEGIKQ--FHVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR 317 (412)
Q Consensus 249 -------~~~~~~--~~~~~~~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r 317 (412)
.+.... ..........+...+...+... .+.++||||+|++.++.+++.|++.|+.+.++||+....++
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa 499 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEA 499 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHH
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHH
Confidence 000000 0011223355777777666542 45689999999999999999999999999999999877777
Q ss_pred HHHHHHHhcCCCcEEEEcCCCcCCCCCCCC--------------------------------------------------
Q 015158 318 DIIMREFRSGSSRVLITTDLLARGIDVQQV-------------------------------------------------- 347 (412)
Q Consensus 318 ~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~-------------------------------------------------- 347 (412)
..+.+.|+.| .|+|+|+++++|+|++..
T Consensus 500 ~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 500 TIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7777777666 699999999999999964
Q ss_pred --CEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHH
Q 015158 348 --SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 389 (412)
Q Consensus 348 --~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 389 (412)
.+||.++.|.|...|.|++||+||.|.+|.+..|++..|.-.
T Consensus 578 GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l~ 621 (922)
T 1nkt_A 578 GGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDELM 621 (922)
T ss_dssp TSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHHH
T ss_pred CCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHHH
Confidence 499999999999999999999999999999999999877643
No 49
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=7.2e-38 Score=293.61 Aligned_cols=296 Identities=18% Similarity=0.176 Sum_probs=198.0
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQ 151 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (412)
.+.+|+++++.+|||||||++|+++++..+... +.+++|++||++|+.|+.+.+..+ + +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccce-----
Confidence 467899999999999999999988888766542 358999999999999999888754 2 222111100
Q ss_pred HHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhC-CCCceEEEEeecCChHHHHHH
Q 015158 152 RILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLL-PPKIQVGVFSATMPPEALEIT 230 (412)
Q Consensus 152 ~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~ 230 (412)
.....+.-+-..+...+...+.. ...+.++++||+||+|++ +..+...+..+.... +.+.+++++|||+++....
T Consensus 71 ~v~Tp~~l~~~l~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~-- 146 (440)
T 1yks_A 71 AHGSGREVIDAMCHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDE-- 146 (440)
T ss_dssp CCCCSSCCEEEEEHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS--
T ss_pred eccCCccceeeecccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhh--
Confidence 00111122333444444443332 334678999999999997 332222222222222 3578999999999764321
Q ss_pred HHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecC
Q 015158 231 RKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 310 (412)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~ 310 (412)
+.... ..+.......+. ..... +...+.. ..+++||||++++.++.+++.|++.+..+..+||
T Consensus 147 --~~~~~------------~~~~~~~~~~~~-~~~~~-~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg 209 (440)
T 1yks_A 147 --FPHSN------------GEIEDVQTDIPS-EPWNT-GHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR 209 (440)
T ss_dssp --SCCCS------------SCEEEEECCCCS-SCCSS-SCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS
T ss_pred --hhhcC------------CCeeEeeeccCh-HHHHH-HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 11110 001111111111 11111 1122222 2579999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE-------------------ccCCCChhhHHHhhhhccc
Q 015158 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN-------------------YDLPTQPENYLHRIGRSGR 371 (412)
Q Consensus 311 ~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R 371 (412)
.+|.++++.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|.||+||+||
T Consensus 210 ----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 210 ----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp ----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred ----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 3588999999999999999999999999999 999986 7789999999999999999
Q ss_pred C-CCCceEEEEe---ccCcHHHHHHHHHHhccccccCCh
Q 015158 372 F-GRKGVAINFV---TRDDERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 372 ~-g~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
. |.+|.|++++ ++.+.+.+..++..+.....+++.
T Consensus 285 ~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 285 NPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp CTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred CCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 8 6899999996 677888888888877554444443
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.3e-37 Score=315.26 Aligned_cols=332 Identities=17% Similarity=0.135 Sum_probs=231.1
Q ss_pred CChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEE
Q 015158 61 KPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKV 138 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 138 (412)
.|+|||.+++..+... .++++.++||+|||.+++..+...+..+ ...++|||||+ +|+.||.+++.+.. +..+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCCE
Confidence 5999999999988864 5889999999999999987777665544 34579999999 99999999997754 5566
Q ss_pred EEEEcCcchHHHHH--HhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCchhhccCcH--HHHHHHHHhCCCCc
Q 015158 139 HACVGGTSVREDQR--ILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADEMLSRGFK--DQIYDIFQLLPPKI 213 (412)
Q Consensus 139 ~~~~~~~~~~~~~~--~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~~~~~~~~--~~~~~i~~~~~~~~ 213 (412)
..++++........ .....++|+|+|++.+.+.... ..+...++++||+||||++.+.... .....+........
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 66655432221111 1123568999999988542111 0122347899999999998755421 11222222223455
Q ss_pred eEEEEeecCChH----HHHHHHH----------------------------hcCC-------------------------
Q 015158 214 QVGVFSATMPPE----ALEITRK----------------------------FMNK------------------------- 236 (412)
Q Consensus 214 ~~i~~SAT~~~~----~~~~~~~----------------------------~~~~------------------------- 236 (412)
+++++||||..+ ....+.. +...
T Consensus 308 ~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~ 387 (968)
T 3dmq_A 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQ 387 (968)
T ss_dssp SEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGG
T ss_pred cEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHh
Confidence 699999998521 1111000 0000
Q ss_pred ---------------------------CeEEEecCCcc---ccCCceEEEEE----------------------------
Q 015158 237 ---------------------------PVRILVKRDEL---TLEGIKQFHVN---------------------------- 258 (412)
Q Consensus 237 ---------------------------~~~~~~~~~~~---~~~~~~~~~~~---------------------------- 258 (412)
...+...+... ...........
T Consensus 388 ~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (968)
T 3dmq_A 388 AANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDM 467 (968)
T ss_dssp GTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhh
Confidence 00000000000 00000111111
Q ss_pred ----------------eccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhc-CCCeeEEecCCCCHHHHHHHH
Q 015158 259 ----------------VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIM 321 (412)
Q Consensus 259 ----------------~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~r~~~~ 321 (412)
......+...+.+++.....+++||||++++.++.+++.|.+ .|+.+..+||+++..+|..++
T Consensus 468 l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l 547 (968)
T 3dmq_A 468 LYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAA 547 (968)
T ss_dssp HCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHH
T ss_pred cChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH
Confidence 111234677888888887789999999999999999999995 599999999999999999999
Q ss_pred HHHhcCC--CcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHh
Q 015158 322 REFRSGS--SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 397 (412)
Q Consensus 322 ~~f~~g~--~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 397 (412)
+.|++|+ ++|||+|+++++|+|+|.+++||++++|+++..|.|++||++|.|+.+.++++...........+.+.+
T Consensus 548 ~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 548 AWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp HHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred HHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 9999998 999999999999999999999999999999999999999999999998777665554433334455555
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.2e-36 Score=284.81 Aligned_cols=269 Identities=17% Similarity=0.149 Sum_probs=188.4
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
+|+++++++|||||||.+++++++..+.. .+.+++|++||++|+.|+.+.+. +..+....+... ...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~-----~~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQ-----SER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcc-----ccC
Confidence 36899999999999999998888855433 23589999999999999987765 344544444321 112
Q ss_pred cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHh-CCCCceEEEEeecCChHHHHHHHHh
Q 015158 155 SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQL-LPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 155 ~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
..+..+.++|.+.+.+.+.. ...+.++++||+||+|++ +..+......+... .+.+.+++++|||+++.... +
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~----~ 141 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA----F 141 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS----S
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh----h
Confidence 23456778888888776665 445678999999999996 33223333333333 25689999999999863111 1
Q ss_pred cCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCC
Q 015158 234 MNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 313 (412)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 313 (412)
... ...+.......+. .....+.+.+... .+++||||++++.++.+++.|++.+..+..+||+
T Consensus 142 ~~~------------~~~i~~~~~~~~~--~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~-- 204 (431)
T 2v6i_A 142 PPS------------NSPIIDEETRIPD--KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK-- 204 (431)
T ss_dssp CCC------------SSCCEEEECCCCS--SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT--
T ss_pred cCC------------CCceeeccccCCH--HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc--
Confidence 100 0111111001111 1111222333333 5789999999999999999999999999999997
Q ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCE-----------------EEEccCCCChhhHHHhhhhcccCCCC-
Q 015158 314 QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGRK- 375 (412)
Q Consensus 314 ~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~g~~- 375 (412)
+|.++++.|++|+.+|||||+++++|+|+| +.+ |++++.|.+..+|.||+||+||.|..
T Consensus 205 --~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~ 281 (431)
T 2v6i_A 205 --TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKL 281 (431)
T ss_dssp --THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred --cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCC
Confidence 578899999999999999999999999999 655 46677888999999999999999854
Q ss_pred ceEEEEe
Q 015158 376 GVAINFV 382 (412)
Q Consensus 376 g~~~~~~ 382 (412)
|.++++.
T Consensus 282 ~~~~~~~ 288 (431)
T 2v6i_A 282 GDIYAYS 288 (431)
T ss_dssp CCEEEEC
T ss_pred CeEEEEc
Confidence 4555554
No 52
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=6.8e-36 Score=287.06 Aligned_cols=309 Identities=15% Similarity=0.184 Sum_probs=215.3
Q ss_pred CChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+|||.+++..+. .++++++.++||+|||.+++..+..... .....++||||| .+|+.||.+++.++.. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICP-LSVLKNWEEELSKFAP--HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEEC-STTHHHHHHHHHHHCT--TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEcc-HHHHHHHHHHHHHHCC--Cc
Confidence 49999999998763 5788999999999999998665554433 234457999999 5689999999999875 45
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEE
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVG 216 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 216 (412)
.+..++|+... .....++|+|+||+.+.+... +....+++||+||||++.+.. ......+..++ ..+++
T Consensus 113 ~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~l 181 (500)
T 1z63_A 113 RFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYRI 181 (500)
T ss_dssp CEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEEE
T ss_pred eEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcEE
Confidence 56666665421 122457899999999865432 223478999999999987654 23444444553 46789
Q ss_pred EEeecCChHHHHH-------------------------------------HHHhcCCCeEEEecCCc----cccCCceEE
Q 015158 217 VFSATMPPEALEI-------------------------------------TRKFMNKPVRILVKRDE----LTLEGIKQF 255 (412)
Q Consensus 217 ~~SAT~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~ 255 (412)
++||||..+.... +..++. +..+...... ...+.....
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~-~~~lrr~k~~~~~~~~lp~~~~~ 260 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIIS-PFILRRTKYDKAIINDLPDKIET 260 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHT-TTEECCCTTCHHHHTTSCSEEEE
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHh-hHeeeecccccchhhcCCCCeEE
Confidence 9999995421111 111111 1111111110 011222222
Q ss_pred EEEeccc--------------------------------------------------------hhhHHHHHHHHHhc--C
Q 015158 256 HVNVEKE--------------------------------------------------------EWKLETLCDLYETL--A 277 (412)
Q Consensus 256 ~~~~~~~--------------------------------------------------------~~~~~~l~~~~~~~--~ 277 (412)
...+... ..+...+.+++... .
T Consensus 261 ~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~ 340 (500)
T 1z63_A 261 NVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDE 340 (500)
T ss_dssp EEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTT
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHcc
Confidence 2222111 12333444555443 4
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEcCCCcCCCCCCCCCEEEEcc
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDLLARGIDVQQVSLVINYD 354 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t~~~~~G~d~~~~~~vi~~~ 354 (412)
++++||||++...++.+.+.|.+. +..+..+||+++..+|.+++++|+++ +.+ +|++|+++++|+|++.+++||+++
T Consensus 341 ~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d 420 (500)
T 1z63_A 341 GDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFD 420 (500)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESS
T ss_pred CCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeC
Confidence 579999999999999999999885 89999999999999999999999998 555 788999999999999999999999
Q ss_pred CCCChhhHHHhhhhcccCCCCceEE--EEeccC
Q 015158 355 LPTQPENYLHRIGRSGRFGRKGVAI--NFVTRD 385 (412)
Q Consensus 355 ~~~s~~~~~Q~~GR~~R~g~~g~~~--~~~~~~ 385 (412)
+|||+..+.|++||++|.|+.+.+. .++...
T Consensus 421 ~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 421 RWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 9999999999999999999877654 444444
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.9e-37 Score=290.44 Aligned_cols=276 Identities=20% Similarity=0.207 Sum_probs=193.0
Q ss_pred HhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcc
Q 015158 67 QRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTS 146 (412)
Q Consensus 67 ~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 146 (412)
......+.+++++++.+|||||||++|+++++..+.. .+.++||++|+++|+.|+.+.+.. ..+....+...
T Consensus 12 ~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~ 83 (459)
T 2z83_A 12 RGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQ 83 (459)
T ss_dssp ---CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC----
T ss_pred HHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC------ceEeEEecccc
Confidence 3335556778999999999999999999998877653 236899999999999999988763 22222211111
Q ss_pred hHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh-----hccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 147 VREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM-----LSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 147 ~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~-----~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
.....+..+.++|...+.+.+... ..+.++++||+||||+. ...++... . ..+++.+++++|||
T Consensus 84 -----~~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~--~~~~~~~~il~SAT 152 (459)
T 2z83_A 84 -----REHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---K--VELGEAAAIFMTAT 152 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---H--HHTTSCEEEEECSS
T ss_pred -----cCCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---H--hccCCccEEEEEcC
Confidence 011234467788888887766654 44678999999999983 22222111 1 12357899999999
Q ss_pred CChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcC
Q 015158 222 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 301 (412)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~ 301 (412)
++........ ...++.... ...+. .....+...+... .+++||||++++.++.+++.|++.
T Consensus 153 ~~~~~~~~~~--~~~pi~~~~--------------~~~~~--~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 153 PPGTTDPFPD--SNAPIHDLQ--------------DEIPD--RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp CTTCCCSSCC--CSSCEEEEE--------------CCCCS--SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CCcchhhhcc--CCCCeEEec--------------ccCCc--chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhc
Confidence 9754211100 011211110 00010 0011111223333 579999999999999999999999
Q ss_pred CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEE--------------------ccCCCChhh
Q 015158 302 DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPEN 361 (412)
Q Consensus 302 ~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~--------------------~~~~~s~~~ 361 (412)
+..+..+|++ +|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999985 6778999999999999999999999999999 99998 559999999
Q ss_pred HHHhhhhcccCCC-CceEEEEeccC
Q 015158 362 YLHRIGRSGRFGR-KGVAINFVTRD 385 (412)
Q Consensus 362 ~~Q~~GR~~R~g~-~g~~~~~~~~~ 385 (412)
|.||+||+||.|. +|.+++|+.+.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 89999999875
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=5.9e-35 Score=253.55 Aligned_cols=226 Identities=31% Similarity=0.469 Sum_probs=192.2
Q ss_pred hhhhcccCCCCCCCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHH
Q 015158 17 ARMNDLLGSDGQDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~ 96 (412)
+.+++..................+|+++++++.+.+.+..+|+..|+++|.++++.+++++++++.+|||+|||++|+++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~ 100 (249)
T 3ber_A 21 QSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALP 100 (249)
T ss_dssp ---------CBCCCCCHHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHH
T ss_pred cccccccCcccccCCcCcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHH
Confidence 33444333333334444556778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-C
Q 015158 97 ILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-Q 175 (412)
Q Consensus 97 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~ 175 (412)
++..+.....+.++||++|+++|+.|+.+.++++....++.+..+.|+............+++|+|+||+++...+.+ .
T Consensus 101 il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~ 180 (249)
T 3ber_A 101 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK 180 (249)
T ss_dssp HHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST
T ss_pred HHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 998877665567899999999999999999999988888899999998876666666667889999999999988876 4
Q ss_pred CCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEe
Q 015158 176 SLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 242 (412)
Q Consensus 176 ~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 242 (412)
.+...++++||+||||++.++++...+..++..++++.+++++|||++.........++.+|..+..
T Consensus 181 ~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 181 GFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred CcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 4567889999999999999999999999999999989999999999999999999999999887654
No 55
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-34 Score=243.33 Aligned_cols=202 Identities=37% Similarity=0.635 Sum_probs=183.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||.+++++++..+.....+.+++|++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 46999999999999999999999999999999999999999999999999999999999988766556678999999999
Q ss_pred HHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC
Q 015158 119 LAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 119 L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~ 197 (412)
|+.|+.+.+..+.... +..+...+|+............+++|+|+||+++.+.+.+......+++++|+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999987666 678888888887766666666788999999999999998877778899999999999999989
Q ss_pred cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEE
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRI 240 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 240 (412)
+...+..+...++++.+++++|||+++.....+..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999998887654
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=8.2e-35 Score=252.19 Aligned_cols=210 Identities=31% Similarity=0.429 Sum_probs=190.5
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-----CCceeE
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-----LVECQA 110 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-----~~~~~~ 110 (412)
.+..+|+++++++.+.+.+...||..|+++|.++++.+++|+++++.+|||+|||++|+++++..+... ..++++
T Consensus 26 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 26 KPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred CccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 456789999999999999999999999999999999999999999999999999999999999876532 245689
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCC
Q 015158 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEA 190 (412)
Q Consensus 111 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~ 190 (412)
+|++|+++|+.|+.+.++.+....++.+..++|+............+++|+|+||+++...+.+....+.+++++|+|||
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTH
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCH
Confidence 99999999999999999999888889999999998877776666777899999999999999888888889999999999
Q ss_pred chhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCC
Q 015158 191 DEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 245 (412)
Q Consensus 191 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
|++.+++|...+..++..++++.+++++|||+++........++.++..+.....
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999988877654
No 57
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.1e-34 Score=248.65 Aligned_cols=214 Identities=61% Similarity=0.945 Sum_probs=181.4
Q ss_pred CCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeE
Q 015158 31 FTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQA 110 (412)
Q Consensus 31 ~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~ 110 (412)
...+..+..+|+++++++.+.+.+..+|+..|+++|.++++.+.+++++++.+|||+|||.+++++++..+.....+.++
T Consensus 6 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~ 85 (224)
T 1qde_A 6 QTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQA 85 (224)
T ss_dssp CBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCE
T ss_pred ccccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceE
Confidence 34455566789999999999999999999999999999999999999999999999999999999999888766566799
Q ss_pred EEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCC
Q 015158 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEA 190 (412)
Q Consensus 111 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~ 190 (412)
+|++|+++|+.|+.+.+..+....+..+..++|+........... .++|+|+||+++...+.+......++++||+|||
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEa 164 (224)
T 1qde_A 86 LMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEA 164 (224)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETH
T ss_pred EEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcCh
Confidence 999999999999999999998777888888888876554443333 3799999999999998887777889999999999
Q ss_pred chhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCC
Q 015158 191 DEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 245 (412)
Q Consensus 191 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
|++.++++...+..+...++++.+++++|||++++.......++..+..+.....
T Consensus 165 h~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 165 DEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999998887765443
No 58
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=1.3e-34 Score=281.33 Aligned_cols=286 Identities=17% Similarity=0.182 Sum_probs=209.1
Q ss_pred hhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH
Q 015158 71 VPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED 150 (412)
Q Consensus 71 ~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (412)
...++++++++++|||||||..++..+... +..+|++|+++|+.|+++.+.+. +..+..++|+......
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al~~l~~~-------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~ 218 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAIQKYFSA-------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ 218 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHHHHHHHS-------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHHHHHHhc-------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec
Confidence 345678999999999999998554444332 24589999999999999998886 6778888887654110
Q ss_pred HHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC-CCceEEEEeecCChHHHHH
Q 015158 151 QRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP-PKIQVGVFSATMPPEALEI 229 (412)
Q Consensus 151 ~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~ 229 (412)
......+++++|++.+. ....++++|+||+|++.+.++...+..++..++ ...+++++|||. +.. ..
T Consensus 219 --TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i-~~ 286 (677)
T 3rc3_A 219 --PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAI-DLV-ME 286 (677)
T ss_dssp --TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGH-HHH-HH
T ss_pred --CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchH-HHH-HH
Confidence 00113678999976642 235789999999999998888999998888887 678899999994 222 33
Q ss_pred HHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEec
Q 015158 230 TRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 309 (412)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~ 309 (412)
+....+....+...... ... ...... . ..+... .+..+|||++++.++.+++.|++.+..+..+|
T Consensus 287 l~~~~~~~~~v~~~~r~---~~l---~~~~~~----l----~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lH 351 (677)
T 3rc3_A 287 LMYTTGEEVEVRDYKRL---TPI---SVLDHA----L----ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIY 351 (677)
T ss_dssp HHHHHTCCEEEEECCCS---SCE---EECSSC----C----CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHhcCCceEEEEeeec---chH---HHHHHH----H----HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeee
Confidence 33333444433222110 000 000000 0 011122 24568999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEcCCCcCCCCCCCCCEEEEccC--------------CCChhhHHHhhhhcccCC
Q 015158 310 GDMDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------PTQPENYLHRIGRSGRFG 373 (412)
Q Consensus 310 ~~~~~~~r~~~~~~f~~--g~~~vlv~t~~~~~G~d~~~~~~vi~~~~--------------~~s~~~~~Q~~GR~~R~g 373 (412)
|++++.+|..+++.|++ |+.+|||||+++++|+|+ ++++||+++. |.|..+|.||+||+||.|
T Consensus 352 G~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 352 GSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp TTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred ccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 99999999999999999 889999999999999999 8999999998 789999999999999998
Q ss_pred CC---ceEEEEeccCcHHHHHHHHHH
Q 015158 374 RK---GVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 374 ~~---g~~~~~~~~~~~~~~~~~~~~ 396 (412)
.. |.|+.+ ...+...++.+...
T Consensus 431 ~~g~~G~v~~l-~~~d~~~~~~~~~~ 455 (677)
T 3rc3_A 431 SRFKEGEVTTM-NHEDLSLLKEILKR 455 (677)
T ss_dssp SSCSSEEEEES-STTHHHHHHHHHHS
T ss_pred CCCCCEEEEEE-ecchHHHHHHHHhc
Confidence 65 555544 34444444444433
No 59
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1e-34 Score=250.65 Aligned_cols=215 Identities=66% Similarity=1.019 Sum_probs=177.8
Q ss_pred CCCCCChhhhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCc
Q 015158 28 QDFFTSYDEVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVE 107 (412)
Q Consensus 28 ~~~~~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~ 107 (412)
+.....+..+..+|+++++++.+.+.+..+||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.....+
T Consensus 19 ~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~ 98 (237)
T 3bor_A 19 GVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE 98 (237)
T ss_dssp --------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCS
T ss_pred CcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCC
Confidence 33444455667889999999999999999999999999999999999999999999999999999999999887655556
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc-CCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS-SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
.++||++|+++|+.|+.+.+..+....+..+....|+........... ..++|+|+||+++...+.+......++++||
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 99 TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEE
Confidence 789999999999999999999998777788888888776554433333 3489999999999999988777788899999
Q ss_pred EeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEe
Q 015158 187 LDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 242 (412)
Q Consensus 187 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 242 (412)
+||||++.++++...+..++..++...+++++|||++++....+..++.++..+..
T Consensus 179 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 179 LDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999999999999999999999999999999999999999988877654
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-33 Score=275.33 Aligned_cols=318 Identities=17% Similarity=0.160 Sum_probs=218.0
Q ss_pred CChHHHHhhhhhhh---------cCccEEEECCCCCCchhHhHHHHHHhhccCC----CceeEEEEcCCHHHHHHHHHHH
Q 015158 61 KPSAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFCSGILQQLDYGL----VECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~---------~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~L~~q~~~~~ 127 (412)
.|+|||.+++..+. .+.++++..+||+|||.+++..+...+.... ...++|||||+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 49999999999874 3567899999999999998777766554332 23469999996 8899999999
Q ss_pred HHhhcccCcEEEEEEcCcchHHHHH---Hhc-----CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcH
Q 015158 128 RALGDYLGVKVHACVGGTSVREDQR---ILS-----SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFK 199 (412)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~ 199 (412)
.++... ...+..++++........ ... ..++|+|+||+.+..... .+....+++||+||||++.+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC--
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh--
Confidence 998754 455555665543322111 111 146899999999976542 3444678999999999987654
Q ss_pred HHHHHHHHhCCCCceEEEEeecCChHHH-------HH-----------HHHhcC--------------------------
Q 015158 200 DQIYDIFQLLPPKIQVGVFSATMPPEAL-------EI-----------TRKFMN-------------------------- 235 (412)
Q Consensus 200 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~-------~~-----------~~~~~~-------------------------- 235 (412)
......+..++ ..+.+++||||-.+.. .+ +...+.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L 287 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQEL 287 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHH
Confidence 22333333343 4578999999853210 00 000000
Q ss_pred ----CCeEEEecCCcc--ccCCceEEEEEecc------------------------------------------------
Q 015158 236 ----KPVRILVKRDEL--TLEGIKQFHVNVEK------------------------------------------------ 261 (412)
Q Consensus 236 ----~~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------------------ 261 (412)
.+.......... ..+........+..
T Consensus 288 ~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 288 ISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp HHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHH
Confidence 000000000000 01111111111000
Q ss_pred -----------------------------chhhHHHHHHHHHh---cCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEec
Q 015158 262 -----------------------------EEWKLETLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 309 (412)
Q Consensus 262 -----------------------------~~~~~~~l~~~~~~---~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~ 309 (412)
...+...+..++.. ..++|+||||++...++.+.+.|...++.+..+|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~ 447 (644)
T 1z3i_X 368 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447 (644)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEe
Confidence 01222333333333 3468999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCc---EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceE--EEEecc
Q 015158 310 GDMDQNTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTR 384 (412)
Q Consensus 310 ~~~~~~~r~~~~~~f~~g~~~---vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~ 384 (412)
|+++..+|.+++++|++++.. +|++|.++++|+|++.+++||++++||++..+.|++||++|.|+...+ +.++..
T Consensus 448 G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~ 527 (644)
T 1z3i_X 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 527 (644)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEEC
Confidence 999999999999999998654 889999999999999999999999999999999999999999987654 445555
Q ss_pred C
Q 015158 385 D 385 (412)
Q Consensus 385 ~ 385 (412)
.
T Consensus 528 ~ 528 (644)
T 1z3i_X 528 G 528 (644)
T ss_dssp T
T ss_pred C
Confidence 4
No 61
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=288.42 Aligned_cols=330 Identities=19% Similarity=0.220 Sum_probs=231.9
Q ss_pred CChHHHHhhhhhhh----cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPFC----KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~----~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+|||.+++..+. .++++++..+||+|||++++..+...........++||||| .+|+.||.+++.++.. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 59999999998766 68899999999999999887766655443344557999999 6788999999999875 56
Q ss_pred EEEEEEcCcchHHHHH------------HhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHH
Q 015158 137 KVHACVGGTSVREDQR------------ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYD 204 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~------------~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~ 204 (412)
.+..++|+........ .....++|+|+||+.+...... +....+++||+||||++.+.. .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 6777777665433221 1234578999999999764332 122368999999999986554 34444
Q ss_pred HHHhCCCCceEEEEeecCCh----HHHHHHHHhcC-----------------------------CCeEEEecCCcc--cc
Q 015158 205 IFQLLPPKIQVGVFSATMPP----EALEITRKFMN-----------------------------KPVRILVKRDEL--TL 249 (412)
Q Consensus 205 i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~-----------------------------~~~~~~~~~~~~--~~ 249 (412)
.+..++ ....+++||||.. ++...+..+.. .+.......... ..
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~L 467 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSL 467 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTS
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhcc
Confidence 555553 4567999999942 12111111111 011111110000 01
Q ss_pred CCceEEEEEecc--------------------------------------------------------------------
Q 015158 250 EGIKQFHVNVEK-------------------------------------------------------------------- 261 (412)
Q Consensus 250 ~~~~~~~~~~~~-------------------------------------------------------------------- 261 (412)
+........+..
T Consensus 468 P~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~ 547 (800)
T 3mwy_W 468 PSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENV 547 (800)
T ss_dssp CCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHH
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHH
Confidence 111111111111
Q ss_pred ------chhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCC---c
Q 015158 262 ------EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS---R 330 (412)
Q Consensus 262 ------~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~---~ 330 (412)
...+...+.+++... .+.++||||+....++.+.++|...|+.+..++|+++..+|..++++|+++.. .
T Consensus 548 ~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v 627 (800)
T 3mwy_W 548 LRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFV 627 (800)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCC
T ss_pred HHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceE
Confidence 122444555666554 34799999999999999999999999999999999999999999999998654 4
Q ss_pred EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceE--EEEeccC--cHHHHHHHHHHhc
Q 015158 331 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRD--DERMLFDIQKFYN 398 (412)
Q Consensus 331 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~--~~~~~~~~~~~~~ 398 (412)
+|++|.++++|+|++.+++||+++++||+..+.|++||++|.|+...+ +.+++.. +.+.+....+.+.
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~ 699 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMI 699 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTT
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999976554 4455554 4555555554443
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-34 Score=246.28 Aligned_cols=207 Identities=33% Similarity=0.503 Sum_probs=182.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
..+|+++++++.+.+.+...|+..|+++|.++++.+++++++++.+|||+|||.+|+++++..+.....+.+++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 35799999999999999999999999999999999999999999999999999999999998877655567899999999
Q ss_pred HHHHHHHHHHHHhhccc----CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh
Q 015158 118 ELAQQIEKVMRALGDYL----GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM 193 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~ 193 (412)
+|+.|+.+.+.++.... +..+..+.|+............+++|+|+||+++...+.+......+++++|+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999987655 67788888877654443334457899999999999998887777788999999999999
Q ss_pred hccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecC
Q 015158 194 LSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 244 (412)
Q Consensus 194 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
.++++...+..+...++++.+++++|||++.+..+.+..++.+|..+....
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999998999999999999999999999999988765443
No 63
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=7.5e-34 Score=244.17 Aligned_cols=205 Identities=39% Similarity=0.610 Sum_probs=179.9
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
.+..+|+++++++.+.+.+...||..|+++|.++++.+.+|+++++.+|||+|||++|+++++..+.....+.++||++|
T Consensus 21 ~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 21 AEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp ---CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34467999999999999999999999999999999999999999999999999999999999888765555678999999
Q ss_pred CHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 116 TRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 116 ~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
+++|+.|+.+.+..+.... ++.+..++|+.....+.... .+++|+|+||+++.+.+....+...+++++|+||||++.
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhh
Confidence 9999999999999987654 78888888887765554444 467999999999999988777777889999999999999
Q ss_pred ccC-cHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEE
Q 015158 195 SRG-FKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRIL 241 (412)
Q Consensus 195 ~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 241 (412)
+++ |...+..++..++...+++++|||+++.....+..+++++..+.
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 180 EEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp STTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred cCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 887 89999999999998999999999999988888888888887654
No 64
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=9.5e-34 Score=243.46 Aligned_cols=206 Identities=31% Similarity=0.438 Sum_probs=177.1
Q ss_pred hhhcccccc-CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC------CCc
Q 015158 35 DEVYDTFDA-MGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG------LVE 107 (412)
Q Consensus 35 ~~~~~~f~~-~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~------~~~ 107 (412)
..+..+|++ +++++.+.+.+...||..|+++|.++++.+++|+++++.+|||+|||++|+++++..+... ..+
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~ 94 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNG 94 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CC
T ss_pred CCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCC
Confidence 344567777 6899999999999999999999999999999999999999999999999999988776432 245
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVL 187 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iii 187 (412)
++++|++|+++|+.|+.+.+..+. ..+..+..++|+............+++|+|+||+++.+.+......+.++++||+
T Consensus 95 ~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 95 PGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 689999999999999999999985 3477888888887766666666777899999999999998888888889999999
Q ss_pred eCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEE
Q 015158 188 DEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRIL 241 (412)
Q Consensus 188 DE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 241 (412)
||||++.++++...+..++..++++.+++++|||+++........++.+|..+.
T Consensus 174 DEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 174 DEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred ECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 999999999999999999999999999999999999999999999998887664
No 65
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=6.3e-34 Score=248.51 Aligned_cols=217 Identities=32% Similarity=0.474 Sum_probs=184.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC---------Cc
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---------VE 107 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---------~~ 107 (412)
+..+|+++++++.+.+.|...||..|+++|.++++.+++++++++.+|||+|||++|+++++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 556899999999999999999999999999999999999999999999999999999999998765432 23
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVL 187 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iii 187 (412)
+++||++|+++|+.|+.+.+..+....++.+..+.|+............+++|+|+||+++...+........+++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 58999999999999999999999877788888899888777666666778899999999999999887777889999999
Q ss_pred eCCchhhccCcHHHHHHHHHhC--CC--CceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCce
Q 015158 188 DEADEMLSRGFKDQIYDIFQLL--PP--KIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIK 253 (412)
Q Consensus 188 DE~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
||||++.+++|...+..++..+ +. +.+++++|||++++.......++.++..+.........++++
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~ 250 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIK 250 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCce
Confidence 9999999999999999998853 33 678999999999999999999999998887766555444443
No 66
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=4.3e-33 Score=235.90 Aligned_cols=201 Identities=38% Similarity=0.563 Sum_probs=178.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCC
Q 015158 40 TFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPT 116 (412)
Q Consensus 40 ~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~ 116 (412)
+|+++++++.+.+.+...|+..|+++|.++++.+.+++++++.+|||+|||.+++++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 58899999999999999999999999999999999999999999999999999999998877532 245689999999
Q ss_pred HHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhcc
Q 015158 117 RELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSR 196 (412)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 196 (412)
++|+.|+.+.+..+... ..+..++|+............+++|+|+||+.+.+.+.+......+++++|+||||++.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998653 6677788887766665556667899999999999998887777889999999999999999
Q ss_pred CcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEe
Q 015158 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILV 242 (412)
Q Consensus 197 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 242 (412)
++...+..++..++++.+++++|||+++........++.+|..+..
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999998887653
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=4.6e-33 Score=281.40 Aligned_cols=319 Identities=13% Similarity=0.088 Sum_probs=208.6
Q ss_pred CChHHHHhhhhhhhc--------------CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHH
Q 015158 61 KPSAIQQRGIVPFCK--------------GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKV 126 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~--------------~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~ 126 (412)
.|||+|.+|++.++. +++++++++||||||.++ ++++..+.......++||+||+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 499999999999875 368999999999999997 44455544333346899999999999999999
Q ss_pred HHHhhcccCcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcCC-C-CCCCceEEEEeCCchhhccCcHHHHH
Q 015158 127 MRALGDYLGVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQS-L-RPDNIRIFVLDEADEMLSRGFKDQIY 203 (412)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~-~-~~~~~~~iiiDE~h~~~~~~~~~~~~ 203 (412)
+..+.... ..++.+.......+ ..+.+|+|+|+++|...+.... . ....+.+||+||||+.... ....
T Consensus 350 f~~f~~~~------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPDS------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTTC------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhcccc------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 98875421 11233333333333 3568999999999998775432 1 2346789999999996532 3355
Q ss_pred HHHHhCCCCceEEEEeecCChHHH----HHHHHhcCCCeEEEecCCccccC---CceEEEEEe-----------c-----
Q 015158 204 DIFQLLPPKIQVGVFSATMPPEAL----EITRKFMNKPVRILVKRDELTLE---GIKQFHVNV-----------E----- 260 (412)
Q Consensus 204 ~i~~~~~~~~~~i~~SAT~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----------~----- 260 (412)
.+...++ +.+++++||||..... .....+++.++..+......... .+...+... .
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred HHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 6666665 5789999999974321 12333444433222110000000 000000000 0
Q ss_pred --------cchhhHHHHH-HHHHh---c--------CCCcEEEEEcchhHHHHHHHHHhcCC------------Cee-EE
Q 015158 261 --------KEEWKLETLC-DLYET---L--------AITQSVIFVNTRRKVDWLTDKMRSRD------------HTV-SA 307 (412)
Q Consensus 261 --------~~~~~~~~l~-~~~~~---~--------~~~k~lif~~~~~~~~~~~~~L~~~~------------~~~-~~ 307 (412)
....+...+. .++.. . ...++||||+|+++|..+++.|.+.+ ..+ .+
T Consensus 500 ~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv 579 (1038)
T 2w00_A 500 AAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATI 579 (1038)
T ss_dssp HTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEE
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEE
Confidence 0111122222 22221 1 23589999999999999999997643 344 44
Q ss_pred ecCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEEEEcCCC
Q 015158 308 THGD----------M----------DQ-----------------------------NTRDIIMREFRSGSSRVLITTDLL 338 (412)
Q Consensus 308 ~~~~----------~----------~~-----------------------------~~r~~~~~~f~~g~~~vlv~t~~~ 338 (412)
+|++ + +. ..|..++++|++|++++||+|+++
T Consensus 580 ~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~l 659 (1038)
T 2w00_A 580 FSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMF 659 (1038)
T ss_dssp CCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTT
T ss_pred EeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchH
Confidence 5542 1 21 147889999999999999999999
Q ss_pred cCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCC--ceEEEEeccCcHHHHH
Q 015158 339 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDERMLF 391 (412)
Q Consensus 339 ~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~--g~~~~~~~~~~~~~~~ 391 (412)
.+|+|+|.+ +++.++.|.+...++|++||++|.++. ..++++......+.+.
T Consensus 660 ltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~ 713 (1038)
T 2w00_A 660 LTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTI 713 (1038)
T ss_dssp SSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHH
T ss_pred HhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHH
Confidence 999999999 566788999999999999999998753 2344444444444443
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-33 Score=238.47 Aligned_cols=204 Identities=41% Similarity=0.635 Sum_probs=178.7
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
..+|+++++++.+.+.+...|+..|+++|.++++.+++++++++.+|||+|||.+++++++..+.......+++|++|++
T Consensus 13 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 35799999999999999999999999999999999999999999999999999999999998876655556899999999
Q ss_pred HHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHh-cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhc
Q 015158 118 ELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRIL-SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLS 195 (412)
Q Consensus 118 ~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~ 195 (412)
+|+.|+.+.++++.... +..+..++|+.....+.... ...++|+|+||+.+...+........+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 99999999999987665 78888888887765554433 34579999999999999888777788999999999999886
Q ss_pred -cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEE
Q 015158 196 -RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRIL 241 (412)
Q Consensus 196 -~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 241 (412)
.++...+..+...++++.+++++|||+++........++.+|..+.
T Consensus 173 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 173 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred ccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 4677888889998888999999999999998888888888887653
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=238.20 Aligned_cols=207 Identities=28% Similarity=0.465 Sum_probs=179.4
Q ss_pred hhccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC----CCceeEE
Q 015158 36 EVYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVECQAL 111 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~l 111 (412)
....+|+++++++.+.+.|...++..|+++|.++++.+++++++++.+|||+|||++++++++..+... ..+.+++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 345689999999999999999999999999999999999999999999999999999999988776431 2356899
Q ss_pred EEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcC-CCCCCCceEEEEeCC
Q 015158 112 VLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQ-SLRPDNIRIFVLDEA 190 (412)
Q Consensus 112 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~-~~~~~~~~~iiiDE~ 190 (412)
|++|+++|+.|+.+.+..+....++.+..++|+.......... .+++|+|+||+++.+.+... .+...+++++|+|||
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 180 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEA 180 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeCh
Confidence 9999999999999999999877778888888887765544433 46799999999998887654 456788999999999
Q ss_pred chhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEec
Q 015158 191 DEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVK 243 (412)
Q Consensus 191 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
|++.++++...+..++..+++..+++++|||+++........++.+|..+...
T Consensus 181 h~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 181 DRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999999999999999999999989888888888877643
No 70
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=240.11 Aligned_cols=200 Identities=30% Similarity=0.494 Sum_probs=173.5
Q ss_pred cccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC----CCceeEEE
Q 015158 39 DTFDAMG--LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG----LVECQALV 112 (412)
Q Consensus 39 ~~f~~~~--l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~----~~~~~~li 112 (412)
.+|+.++ +++.+.+.+..+||..|+++|.++++.++.++++++++|||+|||++|+++++..+... ..+.+++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3566665 89999999999999999999999999999999999999999999999999999876532 13568999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC-CCCCCceEEEEeCCc
Q 015158 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS-LRPDNIRIFVLDEAD 191 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~-~~~~~~~~iiiDE~h 191 (412)
++|+++|+.|+.+.++++....+..+..+.|+............+++|+|+||+++...+.... ....++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 9999999999999999998888888999999888776666666678999999999998877653 567889999999999
Q ss_pred hhhccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCe
Q 015158 192 EMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPV 238 (412)
Q Consensus 192 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~ 238 (412)
++.+++|...+..++..++...+++++|||+++....+....+..+.
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999888887776543
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=243.94 Aligned_cols=205 Identities=36% Similarity=0.587 Sum_probs=179.9
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
...+|+.+++++.+.+.|..+||..|+++|.++++.++.+ +++++.+|||||||++|+++++..+.....++++||++
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 4568999999999999999999999999999999999987 99999999999999999999999887766677899999
Q ss_pred CCHHHHHHHHHHHHHhhccc-CcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHc-CCCCCCCceEEEEeCCch
Q 015158 115 PTRELAQQIEKVMRALGDYL-GVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRR-QSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 115 P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~-~~~~~~~~~~iiiDE~h~ 192 (412)
|+++|+.|+.+.+..+.... ++.+....|+...... ...+++|+|+||++|..++.+ ..+.+.++++||+||||+
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~ 246 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADV 246 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh---hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHH
Confidence 99999999999999987654 5777777776654322 135678999999999998866 455678899999999999
Q ss_pred hhc-cCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHhcCCCeEEEecC
Q 015158 193 MLS-RGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKR 244 (412)
Q Consensus 193 ~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 244 (412)
+.+ .++...+..+...++++.|++++|||++.........++.+|..+....
T Consensus 247 l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 247 MIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 987 6788999999999999999999999999999999999999998877643
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.98 E-value=6e-30 Score=242.14 Aligned_cols=321 Identities=18% Similarity=0.190 Sum_probs=230.4
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+. |++.|.-..-.+.+|+ +..+.||+|||+++.++++-....+ ..+.|++|+..|+.|-++++..+...+|+
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG---KGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC---CceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 3666 9999999998888887 8999999999999998887443333 47999999999999999999999999999
Q ss_pred EEEEEEcCc------------------------------------------------chHHHHHHhcCCCcEEEeChHHH
Q 015158 137 KVHACVGGT------------------------------------------------SVREDQRILSSGVHVVVGTPGRV 168 (412)
Q Consensus 137 ~~~~~~~~~------------------------------------------------~~~~~~~~~~~~~~iii~T~~~l 168 (412)
++.++.... ......+...-.++|+++|...|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 999988721 00001111122368999999887
Q ss_pred HH-HHHc------CCCCCCCceEEEEeCCchhh-ccC---------------cHHHHHHHHHhC----------------
Q 015158 169 FD-MLRR------QSLRPDNIRIFVLDEADEML-SRG---------------FKDQIYDIFQLL---------------- 209 (412)
Q Consensus 169 ~~-~~~~------~~~~~~~~~~iiiDE~h~~~-~~~---------------~~~~~~~i~~~~---------------- 209 (412)
-- .+.. .....+.+.+.|+||++.++ +.. ....+..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 43 3332 12234678899999999754 110 000111111100
Q ss_pred ----------------------------------------C---------------------------------------
Q 015158 210 ----------------------------------------P--------------------------------------- 210 (412)
Q Consensus 210 ----------------------------------------~--------------------------------------- 210 (412)
.
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 0
Q ss_pred ----------------------CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHH
Q 015158 211 ----------------------PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLET 268 (412)
Q Consensus 211 ----------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (412)
--.++.|||||......+ +...++-.+. .+ +....................+...
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~E-f~~iY~l~vv-~I-Ptnkp~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESE-FVQVYGMEVV-VI-PTHKPMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHH-HHHHSCCCEE-EC-CCSSCCCCEECCCEEESSHHHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHH-HHHHhCCeEE-EE-CCCCCcceeecCcEEEecHHHHHHH
Confidence 124799999999876554 4555554432 22 2221111122211223344567777
Q ss_pred HHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC-
Q 015158 269 LCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ- 345 (412)
Q Consensus 269 l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~- 345 (412)
+.+.+... .+.++||||+|++.++.+++.|++.|+.+..+||+....++..+.+.++.| .|+|||+++++|+|++
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~l 540 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKL 540 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCC
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccC
Confidence 77776653 457999999999999999999999999999999986555555555555544 6999999999999998
Q ss_pred -------CCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHH
Q 015158 346 -------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 388 (412)
Q Consensus 346 -------~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 388 (412)
+..+||.++.|.|...|.|++||+||.|.+|.+++|++..|.-
T Consensus 541 g~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 541 GPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp CTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred CcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHH
Confidence 6679999999999999999999999999999999999988743
No 73
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.98 E-value=1.3e-31 Score=232.72 Aligned_cols=208 Identities=26% Similarity=0.454 Sum_probs=172.2
Q ss_pred ccccccC----CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC-CCceeEEE
Q 015158 38 YDTFDAM----GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG-LVECQALV 112 (412)
Q Consensus 38 ~~~f~~~----~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~-~~~~~~li 112 (412)
..+|+.+ ++++.+.+.+...||..|+++|.++++.+++++++++.+|||+|||++|+++++..+... ..+.+++|
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~li 103 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALI 103 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEE
Confidence 3455554 899999999999999999999999999999999999999999999999999999887542 34568999
Q ss_pred EcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH-HHHhcCCCcEEEeChHHHHHHHHcC--CCCCCCceEEEEeC
Q 015158 113 LAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED-QRILSSGVHVVVGTPGRVFDMLRRQ--SLRPDNIRIFVLDE 189 (412)
Q Consensus 113 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iii~T~~~l~~~~~~~--~~~~~~~~~iiiDE 189 (412)
++|+++|+.|+.+.+.++....+..+..++++...... ......+++|+|+||+++...+... ...+.+++++|+||
T Consensus 104 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 104 ISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeC
Confidence 99999999999999999988777777777665432221 1122456799999999999988776 45678899999999
Q ss_pred Cchhhc---cCcHHHHHHHHHhC-CCCceEEEEeecCChHHHHHHHHhcCCCeEEEecCC
Q 015158 190 ADEMLS---RGFKDQIYDIFQLL-PPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRD 245 (412)
Q Consensus 190 ~h~~~~---~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 245 (412)
||++.+ .++...+..++..+ +.+.+++++|||++++.......++.++..+.....
T Consensus 184 ah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred hHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 999987 46778888887665 457899999999999999999999999988877553
No 74
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.96 E-value=3.3e-28 Score=197.36 Aligned_cols=162 Identities=67% Similarity=1.026 Sum_probs=147.3
Q ss_pred CceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015158 251 GIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 330 (412)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 330 (412)
++.+.+..++....+...+.+++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 82 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR 82 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE
Confidence 56777777777666999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCChhhhh
Q 015158 331 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVAD 410 (412)
Q Consensus 331 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (412)
|||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++++.+...+..++++++..+++++.++.+
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIAT 162 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTT
T ss_pred EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cC
Q 015158 411 LL 412 (412)
Q Consensus 411 l~ 412 (412)
++
T Consensus 163 ~~ 164 (165)
T 1fuk_A 163 LL 164 (165)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 75
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.96 E-value=2.9e-27 Score=191.34 Aligned_cols=158 Identities=41% Similarity=0.634 Sum_probs=146.7
Q ss_pred cccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhc
Q 015158 247 LTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 326 (412)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 326 (412)
..++++.+.+..+.. ..+...+.+++.....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVRE-ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCG-GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECCh-HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 345667888777765 6688999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 327 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 327 g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
|+.+|||+|+++++|+|+|++++||+++.|+++..|.||+||+||.|++|.+++++++.+...+..++++++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998877654
No 76
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=193.82 Aligned_cols=160 Identities=45% Similarity=0.796 Sum_probs=146.7
Q ss_pred ccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcC
Q 015158 248 TLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 327 (412)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 327 (412)
.+.++.+.+..++....+...+.++++....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45678888888887677999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEcCCCcCCCCCCCCCEEEEccCC------CChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhcccc
Q 015158 328 SSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 401 (412)
Q Consensus 328 ~~~vlv~t~~~~~G~d~~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (412)
+.+|||+|+++++|+|+|.+++||+++.| .+...|.||+||+||.|+.|.+++++++.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999988
Q ss_pred ccCChh
Q 015158 402 EELPAN 407 (412)
Q Consensus 402 ~~~~~~ 407 (412)
++++..
T Consensus 164 ~~~~~~ 169 (175)
T 2rb4_A 164 KQLNAE 169 (175)
T ss_dssp EEECSS
T ss_pred cccCCc
Confidence 877754
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=196.74 Aligned_cols=179 Identities=27% Similarity=0.446 Sum_probs=145.4
Q ss_pred HHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecC
Q 015158 231 RKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 310 (412)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~ 310 (412)
..++.+|..+.+........++.+.+..++. ..+...+.+++.... +++||||++++.++.+++.|+..++.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKE-EAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp -------------------CCSEEEEEECCG-GGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcCh-HHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 3455667677666666667788888887765 568888888887754 68999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC-cHHH
Q 015158 311 DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERM 389 (412)
Q Consensus 311 ~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~ 389 (412)
+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++|+++. +...
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 7888
Q ss_pred HHHHHHHhccccccCChhhhhc
Q 015158 390 LFDIQKFYNVVIEELPANVADL 411 (412)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~l 411 (412)
+..+++.++...+.+|.++.++
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHHccCcCCHHHHhh
Confidence 9999999999999999988764
No 78
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=8.6e-26 Score=221.23 Aligned_cols=117 Identities=26% Similarity=0.363 Sum_probs=108.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 355 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~- 355 (412)
.+.++||||+++..++.+++.|.+.|+.+..+||+++..+|..+++.|++|+.+|||+|+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHH
Q 015158 356 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 394 (412)
Q Consensus 356 ----~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~ 394 (412)
|.|...|+||+||+||.+ .|.+++++++.+....+.+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 889999999999999995 79999999887665544443
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4.7e-27 Score=191.55 Aligned_cols=158 Identities=35% Similarity=0.660 Sum_probs=144.8
Q ss_pred CCceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCC
Q 015158 250 EGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 329 (412)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 329 (412)
..+.+.+..+.. ..+...+.++++....+++||||++++.++.+++.|.+.+..+..+||+++..+|..+++.|++|+.
T Consensus 4 ~~i~q~~~~~~~-~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKD-NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCG-GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECCh-HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 457777777765 6688999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccC-cHHHHHHHHHHhccccccCChhh
Q 015158 330 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPANV 408 (412)
Q Consensus 330 ~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 408 (412)
+|||+|+++++|+|+|++++||+++.|+|+..|.||+||+||.|+.|.+++++++. +.+.++.+++.+...++++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 56788999999999999998765
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.95 E-value=3.3e-27 Score=194.62 Aligned_cols=164 Identities=34% Similarity=0.538 Sum_probs=138.0
Q ss_pred cccCCceEEEEEeccchhhHHHHHHHHHhc-CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHh
Q 015158 247 LTLEGIKQFHVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 325 (412)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 325 (412)
...+++.+.+..+.. ..+...+.+++... ..+++||||+++..++.+++.|+..++.+..+||+++..+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~~-~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECCG-GGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeCc-HHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 445678888887765 56888899998886 5689999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 326 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 326 ~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
+|+.+|||+|+++++|+|+|++++||+++.|+|+..|.||+||+||.|+.|.+++++++.+...++.++++++...+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhc
Q 015158 406 ANVADL 411 (412)
Q Consensus 406 ~~~~~l 411 (412)
.++.++
T Consensus 174 ~~l~~~ 179 (185)
T 2jgn_A 174 SWLENM 179 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 81
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.95 E-value=1.3e-25 Score=216.59 Aligned_cols=317 Identities=19% Similarity=0.186 Sum_probs=227.8
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
.|+ .|++.|..+++.+++|+ +..+.||+|||+++.++++.....+ ..++|++||+.|+.|.++.+..++..+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G---~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTG---KGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTC---SCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhC---CCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 588 69999999999999998 8999999999999999996443333 47999999999999999999999999999
Q ss_pred EEEEEEcCcchHHHHHHhcCCCcEEEeChHHH-HHHHHcC------CCCCC---CceEEEEeCCchhh-ccCc-------
Q 015158 137 KVHACVGGTSVREDQRILSSGVHVVVGTPGRV-FDMLRRQ------SLRPD---NIRIFVLDEADEML-SRGF------- 198 (412)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l-~~~~~~~------~~~~~---~~~~iiiDE~h~~~-~~~~------- 198 (412)
++..+.|+.+.... .....++|+|+||..| +.++... ...++ ++.++|+||+|.++ +.+.
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLIISg 227 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLIISG 227 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEEEE
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeeeeC
Confidence 99999998774333 3334689999999999 6666654 24456 89999999999875 2110
Q ss_pred --------HHHHHHHHHhCC------------------------------------------------------------
Q 015158 199 --------KDQIYDIFQLLP------------------------------------------------------------ 210 (412)
Q Consensus 199 --------~~~~~~i~~~~~------------------------------------------------------------ 210 (412)
...+..+...++
T Consensus 228 p~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~A 307 (997)
T 2ipc_A 228 PAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLIQA 307 (997)
T ss_dssp SCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHHHH
Confidence 011111111110
Q ss_pred ---------------------------------------------------------------------CCceEEEEeec
Q 015158 211 ---------------------------------------------------------------------PKIQVGVFSAT 221 (412)
Q Consensus 211 ---------------------------------------------------------------------~~~~~i~~SAT 221 (412)
--.++.|||+|
T Consensus 308 LrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGT 387 (997)
T 2ipc_A 308 IRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMTGT 387 (997)
T ss_dssp HHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEESS
T ss_pred HHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecCCC
Confidence 12478999999
Q ss_pred CChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHH-hc-CCCcEEEEEcchhHHHHHHHHHh
Q 015158 222 MPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYE-TL-AITQSVIFVNTRRKVDWLTDKMR 299 (412)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-~~~k~lif~~~~~~~~~~~~~L~ 299 (412)
...+..+ +...++-.+.. +.. .....-....-........+...+.+-+. .+ .+.++||.|.|++..+.+++.|+
T Consensus 388 A~tE~~E-f~~iY~l~Vv~-IPT-n~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 388 AKTEEKE-FQEIYGMDVVV-VPT-NRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp CGGGHHH-HHHHHCCCEEE-CCC-SSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHH
T ss_pred chHHHHH-HHHHhCCCEEE-cCC-CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHh
Confidence 9776544 44455544422 222 11111122222333444555555544433 33 45799999999999999999998
Q ss_pred ----------------------------------------------------------------------------cCCC
Q 015158 300 ----------------------------------------------------------------------------SRDH 303 (412)
Q Consensus 300 ----------------------------------------------------------------------------~~~~ 303 (412)
+.|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI 544 (997)
T 2ipc_A 465 EPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGI 544 (997)
T ss_dssp CGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcCC
Confidence 4566
Q ss_pred eeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcCCCcCCCCCCCC-------------------C---------------
Q 015158 304 TVSATHGDMDQNTRDIIMREFRSG-SSRVLITTDLLARGIDVQQV-------------------S--------------- 348 (412)
Q Consensus 304 ~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~t~~~~~G~d~~~~-------------------~--------------- 348 (412)
...++++.....+ .+|+. +.| ...|.|+|+++++|.|+.-- .
T Consensus 545 ~H~VLNAK~he~E-AeIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (997)
T 2ipc_A 545 PHQVLNAKHHARE-AEIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKE 621 (997)
T ss_dssp CCCEECSSSHHHH-HHHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCH
T ss_pred CeeeccccchHHH-HHHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccch
Confidence 7777776643222 23333 345 44599999999999998632 1
Q ss_pred ----------------------------------------EEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 349 ----------------------------------------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 349 ----------------------------------------~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
+||....+.|...-.|..||+||-|.+|.+-.|++-.|.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 622 EEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 788899999999999999999999999999989887765
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1.9e-25 Score=218.73 Aligned_cols=172 Identities=23% Similarity=0.299 Sum_probs=129.4
Q ss_pred CCceEEEEeecCChHHHHHHHHhcCCCeEEEecCCccccCCceEEEEEeccchhhHHHHHHHHHh-c-CCCcEEEEEcch
Q 015158 211 PKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYET-L-AITQSVIFVNTR 288 (412)
Q Consensus 211 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~k~lif~~~~ 288 (412)
...+++++|||+++..... ................+. ..+.........+...+.. . .+.++||||+++
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 3578899999997543221 111111111111111111 1122222333434333333 2 457999999999
Q ss_pred hHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCCCCCEEEEccC-----CCChhhHH
Q 015158 289 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYL 363 (412)
Q Consensus 289 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~~~~~vi~~~~-----~~s~~~~~ 363 (412)
..++.+++.|++.|+.+..+||+++..+|..+++.|++|+.+|||+|+.+++|+|+|++++||+++. |.|...|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~i 535 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI 535 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 89999999
Q ss_pred HhhhhcccCCCCceEEEEeccCcHHHHHH
Q 015158 364 HRIGRSGRFGRKGVAINFVTRDDERMLFD 392 (412)
Q Consensus 364 Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~ 392 (412)
||+||+||. ..|.+++++++.+......
T Consensus 536 Qr~GRagR~-~~G~~i~~~~~~~~~~~~~ 563 (661)
T 2d7d_A 536 QTIGRAARN-AEGRVIMYADKITKSMEIA 563 (661)
T ss_dssp HHHHTTTTS-TTCEEEEECSSCCHHHHHH
T ss_pred HHhCcccCC-CCCEEEEEEeCCCHHHHHH
Confidence 999999998 6899999999876654443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.94 E-value=1.2e-25 Score=189.70 Aligned_cols=145 Identities=31% Similarity=0.549 Sum_probs=136.3
Q ss_pred chhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCC
Q 015158 262 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 341 (412)
Q Consensus 262 ~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G 341 (412)
...+...+.+++.....+++||||++++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||+|+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36789999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCCh
Q 015158 342 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 342 ~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
+|+|++++||+++.|+|...|.||+||+||.|++|.|++++++.+...+..+++.++..++.++.
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 99999999999999999999999999999999999999999999999999999999987776653
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=8.8e-25 Score=192.69 Aligned_cols=154 Identities=31% Similarity=0.520 Sum_probs=138.5
Q ss_pred ceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcE
Q 015158 252 IKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 331 (412)
Q Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 331 (412)
+.+.+..... ..+...+.+++.....+++||||++++.++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|
T Consensus 3 v~~~~i~~~~-~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 3 YEEEAVPAPV-RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp SEEEEEECCS-SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred eEEEEEECCH-HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 4555665555 668999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCCh
Q 015158 332 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPA 406 (412)
Q Consensus 332 lv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (412)
||+|+++++|+|+|++++||+++.|++...|.||+||+||.|++|.|++|+++.+...+..+++.++..++.++.
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999987776653
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.86 E-value=7.2e-27 Score=190.36 Aligned_cols=155 Identities=34% Similarity=0.536 Sum_probs=140.8
Q ss_pred CceEEEEEeccchhhHHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCc
Q 015158 251 GIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 330 (412)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 330 (412)
++.+.+...+....+...+.++++....+++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++|+.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~ 82 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82 (170)
Confidence 34455555554456788888888887778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccccCC
Q 015158 331 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 405 (412)
Q Consensus 331 vlv~t~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (412)
|||+|+++++|+|+|++++||+++.|+|...|.||+||+||.|+.|.+++++++.+...+..++++++..++...
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 999999999999999999999999999999999999999999999999999999999999999999988776554
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.91 E-value=5.7e-24 Score=204.35 Aligned_cols=103 Identities=11% Similarity=0.173 Sum_probs=67.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEE--EcCCCcCCCCCCC----CCEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI--TTDLLARGIDVQQ----VSLV 350 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv--~t~~~~~G~d~~~----~~~v 350 (412)
..+++|||++|...++.+++.+.. .. ...++.. .++.+++++|+++. .|++ +|..+.+|+|+|+ +++|
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~V 456 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESL 456 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEE
Confidence 457899999999999999998875 22 3445443 46888999999864 5777 7799999999997 7899
Q ss_pred EEccCCCCh------------------------------hhHHHhhhhcccCCCCceEEEEeccC
Q 015158 351 INYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 351 i~~~~~~s~------------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
|+++.|... ..+.|.+||+.|...+-.++++++..
T Consensus 457 ii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 457 VLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 999988431 34679999999986655556566554
No 87
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.91 E-value=9.4e-25 Score=185.85 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=116.4
Q ss_pred CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCHHHHHH-HHHHHHHhhc
Q 015158 57 YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTRELAQQ-IEKVMRALGD 132 (412)
Q Consensus 57 ~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q-~~~~~~~~~~ 132 (412)
.....|+++|.++++.+.+++++++.+|||+|||++++.++...+... ..+.+++|++|+++|+.| +.+.+..+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 344469999999999999999999999999999999998888765432 124589999999999999 7788888765
Q ss_pred ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCC------CCCCCceEEEEeCCchhhccCcHHHH-HHH
Q 015158 133 YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQS------LRPDNIRIFVLDEADEMLSRGFKDQI-YDI 205 (412)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~------~~~~~~~~iiiDE~h~~~~~~~~~~~-~~i 205 (412)
. +..+..+.|+............+++|+|+||+.|.+.+.... ....++++||+||||++.+.++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 567777777665443333333457999999999998887643 44678899999999998766544443 333
Q ss_pred HHhC-------------CCCceEEEEeec
Q 015158 206 FQLL-------------PPKIQVGVFSAT 221 (412)
Q Consensus 206 ~~~~-------------~~~~~~i~~SAT 221 (412)
.... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 157889999998
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.90 E-value=8e-22 Score=190.22 Aligned_cols=311 Identities=17% Similarity=0.126 Sum_probs=197.6
Q ss_pred CChHHHHhhhhhh----hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCc
Q 015158 61 KPSAIQQRGIVPF----CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGV 136 (412)
Q Consensus 61 ~l~~~Q~~a~~~~----~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 136 (412)
++||+|.+.+..+ ..++++++.+|||+|||++|+++++. .+.+++|++||++|+.|+.+++..+....++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 3999999977754 46899999999999999999999887 2358999999999999999999888666677
Q ss_pred EEEEEEcCcch---------------------------------HHHH------------------HHhcCCCcEEEeCh
Q 015158 137 KVHACVGGTSV---------------------------------REDQ------------------RILSSGVHVVVGTP 165 (412)
Q Consensus 137 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~iii~T~ 165 (412)
++..+.|..+. .... ......++|||+||
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77776664321 0000 11234679999999
Q ss_pred HHHHHHHHcCCCCC-CCceEEEEeCCchhhccCc----------------------------------------------
Q 015158 166 GRVFDMLRRQSLRP-DNIRIFVLDEADEMLSRGF---------------------------------------------- 198 (412)
Q Consensus 166 ~~l~~~~~~~~~~~-~~~~~iiiDE~h~~~~~~~---------------------------------------------- 198 (412)
..|+....+..+.. ....++|+||||++.+ ..
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99988755443322 3567999999998765 20
Q ss_pred ---------HHHHH----------------------------HHHH----------------------------hCCCC-
Q 015158 199 ---------KDQIY----------------------------DIFQ----------------------------LLPPK- 212 (412)
Q Consensus 199 ---------~~~~~----------------------------~i~~----------------------------~~~~~- 212 (412)
...+. .++. .+...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 0000 01122
Q ss_pred ceEEEEeecCChHHHHHHHHhcCCC-eEE----EecCCccccCCceEEEEEe--cc--c---hhhHHHHHHHHHh---cC
Q 015158 213 IQVGVFSATMPPEALEITRKFMNKP-VRI----LVKRDELTLEGIKQFHVNV--EK--E---EWKLETLCDLYET---LA 277 (412)
Q Consensus 213 ~~~i~~SAT~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~--~~--~---~~~~~~l~~~~~~---~~ 277 (412)
..+|++|||+.+ .......++-+ ... ...-.... ..-...+... +. . ......+.+.+.. ..
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 578999999986 34444455543 111 00111111 1112222221 11 0 1112333333322 24
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEc--CCCcCCCCCC-----CCCEE
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT--DLLARGIDVQ-----QVSLV 350 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t--~~~~~G~d~~-----~~~~v 350 (412)
.+.++||++|....+.+++. .+..+..-..+++ +..+++.|+.++..|++++ ..+.+|+|+| .++.|
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~v 466 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDV 466 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEE
T ss_pred CCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccCCcceeEE
Confidence 57899999999999999873 3444443333444 4557778854444799998 5999999999 37889
Q ss_pred EEccCCCC------------------------------hhhHHHhhhhcccCCCCceEEEEeccCcH
Q 015158 351 INYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRDDE 387 (412)
Q Consensus 351 i~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~ 387 (412)
|+.+.|+. ...+.|.+||+.|...+.-++++++..-.
T Consensus 467 iI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~ 533 (551)
T 3crv_A 467 VIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFE 533 (551)
T ss_dssp EEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhcc
Confidence 98887641 11246999999998766666666666433
No 89
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.88 E-value=1.2e-22 Score=179.78 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=120.6
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
.|+++|.++++.++.+++.++++|||+|||.+++.++...+..+ ..++||++|+++|+.||.+++.++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 59999999999999888899999999999999987777655432 2479999999999999999999986655566666
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
+.++..... ......+|+|+|++.+.+.. .....++++||+||||++.+ ..+..++..+....+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~---~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQP---KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTSC---GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhhH---HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 666654322 12245799999999875432 22346789999999999763 366777787777899999999
Q ss_pred cCChH
Q 015158 221 TMPPE 225 (412)
Q Consensus 221 T~~~~ 225 (412)
||++.
T Consensus 261 Tp~~~ 265 (282)
T 1rif_A 261 SLRDG 265 (282)
T ss_dssp SCCTT
T ss_pred CCCCc
Confidence 99764
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=162.13 Aligned_cols=171 Identities=19% Similarity=0.207 Sum_probs=122.6
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC--CceeEEEEcCCHHHHHHHH
Q 015158 47 QENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL--VECQALVLAPTRELAQQIE 124 (412)
Q Consensus 47 ~~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~--~~~~~lil~P~~~L~~q~~ 124 (412)
++.+.+.+.......++++|.++++.+.+|+++++.+|||||||+++..+++....... ...++++++|+++++.|+.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 33444444443444589999999999999999999999999999888777776554332 2458999999999999998
Q ss_pred HHHHHhhc-ccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchh-hccCcH-HH
Q 015158 125 KVMRALGD-YLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEM-LSRGFK-DQ 201 (412)
Q Consensus 125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~-~~~~~~-~~ 201 (412)
+.+..... ..+..+......... ......+|+|+||+++.+.+.. .++++++||+||+|+. .+.++. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 88876432 223333332221110 0114578999999999998876 3678999999999984 555555 35
Q ss_pred HHHHHHhCCCCceEEEEeecCChHH
Q 015158 202 IYDIFQLLPPKIQVGVFSATMPPEA 226 (412)
Q Consensus 202 ~~~i~~~~~~~~~~i~~SAT~~~~~ 226 (412)
+..+.... ++.+++++|||++.+.
T Consensus 199 l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred HHHHHhhC-CCCeEEEEecCCCHHH
Confidence 55666555 4789999999998754
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.84 E-value=2.1e-19 Score=174.57 Aligned_cols=111 Identities=15% Similarity=0.261 Sum_probs=76.3
Q ss_pred HHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC--CCcCCCCCCC-
Q 015158 270 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ- 346 (412)
Q Consensus 270 ~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~--~~~~G~d~~~- 346 (412)
.+++... .+.++||++|....+.+++.|+. .... ...+++..++..++++|. ++..||+++. .+.+|+|+|+
T Consensus 441 ~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~ 515 (620)
T 4a15_A 441 EDIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGN 515 (620)
T ss_dssp HHHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------C
T ss_pred HHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCC
Confidence 3344433 47899999999999999998873 2222 444555678999999999 8888999974 8999999995
Q ss_pred -CCEEEEccCCCCh-----------------------------hhHHHhhhhcccCCCCceEEEEeccC
Q 015158 347 -VSLVINYDLPTQP-----------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 347 -~~~vi~~~~~~s~-----------------------------~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
++.||+.+.|+.. ..+.|.+||+.|...+-.++++++..
T Consensus 516 ~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 516 ELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp CCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred ceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 7899999887531 22479999999987665566666554
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.83 E-value=3e-20 Score=159.25 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=109.2
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcE-EE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVK-VH 139 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~-~~ 139 (412)
.|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.||.+.+.++ +.. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 5999999999999999899999999999999987766653 247999999999999999988884 566 77
Q ss_pred EEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 140 ACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
.+.|+.. ...+|+|+|++.+....... ...+++||+||+|++.+..+. .+...++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 7776654 24689999999987655421 245899999999998766543 3445454 67789999
Q ss_pred ecCChH
Q 015158 220 ATMPPE 225 (412)
Q Consensus 220 AT~~~~ 225 (412)
|||...
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 999753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.77 E-value=2.4e-18 Score=149.91 Aligned_cols=125 Identities=16% Similarity=0.235 Sum_probs=98.1
Q ss_pred cchhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHHhcC-CCc-EEEEc
Q 015158 261 KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITT 335 (412)
Q Consensus 261 ~~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~-vlv~t 335 (412)
....|...+.+++... .+.++||||++...++.+.+.|.+. |+.+..+||+++..+|..++++|+++ +.+ +|++|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3456888888888776 6789999999999999999999885 99999999999999999999999998 677 78899
Q ss_pred CCCcCCCCCCCCCEEEEccCCCChhhHHHhhhhcccCCCCceE--EEEeccC
Q 015158 336 DLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRD 385 (412)
Q Consensus 336 ~~~~~G~d~~~~~~vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~ 385 (412)
+++++|+|++.+++||++++||++..+.|++||++|.|+.+.+ +.++...
T Consensus 173 ~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999999987765 4455554
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.79 E-value=1.1e-08 Score=99.51 Aligned_cols=146 Identities=21% Similarity=0.201 Sum_probs=87.4
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhH--hHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEE
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTAT--FCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHA 140 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~--~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 140 (412)
.+.|+.|+..++.++.+++.|++|||||.+ +++..+..... ..+.++++++||...+.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 688999999999999999999999999944 44444443321 234589999999999999888776654333321100
Q ss_pred EEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 141 CVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
..+ .. .. ...-+.++-.++... .+.........++++|+||++.+ + ...+..++..++.+.+++++.-
T Consensus 230 ~~~-~~--~~---~~Tih~ll~~~~~~~--~~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD 297 (608)
T 1w36_D 230 KKR-IP--ED---ASTLHRLLGAQPGSQ--RLRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGD 297 (608)
T ss_dssp CCS-CS--CC---CBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEEC
T ss_pred Hhc-cc--hh---hhhhHhhhccCCCch--HHHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcc
Confidence 000 00 00 000011111222211 01111122236899999999954 3 3567788888888888888776
Q ss_pred c
Q 015158 221 T 221 (412)
Q Consensus 221 T 221 (412)
.
T Consensus 298 ~ 298 (608)
T 1w36_D 298 R 298 (608)
T ss_dssp T
T ss_pred h
Confidence 5
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.63 E-value=3.6e-08 Score=96.85 Aligned_cols=67 Identities=22% Similarity=0.218 Sum_probs=55.1
Q ss_pred CChHHHHhhhhhhhcCc-cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 61 KPSAIQQRGIVPFCKGL-DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~-~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.|++.|++|+..++..+ -.+|+||+|||||.+..-.+...+..+ .++|+++||..-++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~---~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQG---LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEcCchHHHHHHHHHHHhc
Confidence 48999999999987654 578999999999988776666655543 58999999999999998887654
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=5.7e-07 Score=89.79 Aligned_cols=70 Identities=21% Similarity=0.248 Sum_probs=55.7
Q ss_pred CCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 59 ~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
+..+++.|++|+..++.+...+|.||+|||||.+....+...... .+.++++++||...++++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 345889999999999888788999999999998765444333321 2358999999999999999888765
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.54 E-value=3.4e-07 Score=89.43 Aligned_cols=70 Identities=19% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 59 FEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 59 ~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
...+++.|.+|+..++.+...+|.||+|+|||.+....+...... .+.++++++|+...++++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 345899999999998888888999999999998765444333321 3458999999999999988877654
No 98
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.51 E-value=7.4e-07 Score=85.70 Aligned_cols=126 Identities=20% Similarity=0.236 Sum_probs=79.7
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEE
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHAC 141 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (412)
+++.|++++..+..++.+++.|++|+|||.+... ++..+.. .+.++++++||...+..+.+.. +.....+
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~-------~~~a~Ti 259 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAES--LGLEVGLCAPTGKAARRLGEVT-------GRTASTV 259 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHH--TTCCEEEEESSHHHHHHHHHHH-------TSCEEEH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHh--cCCeEEEecCcHHHHHHhHhhh-------cccHHHH
Confidence 8999999999999999999999999999976533 3333322 2358999999998877665532 1111111
Q ss_pred EcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 142 VGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
+ .. +. ... + .+.........+++||+||++.+. ...+..++..++...+++++.-.
T Consensus 260 h------~l---l~----~~~-~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD~ 315 (574)
T 3e1s_A 260 H------RL---LG----YGP-Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGDT 315 (574)
T ss_dssp H------HH---TT----EET-T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEECT
T ss_pred H------HH---Hc----CCc-c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEecc
Confidence 0 00 00 000 0 011111223467899999999753 34566777778777777776554
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.50 E-value=6.5e-07 Score=84.23 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=79.8
Q ss_pred HCCCCCChHHHHhhhhhhhcC-----ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 56 AYGFEKPSAIQQRGIVPFCKG-----LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 56 ~~~~~~l~~~Q~~a~~~~~~~-----~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
...|..|++-|++|+..+... ..++|.|+.|||||.+.. .++..+.... ...+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~--- 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG-ETGIILAAPTHAAKKILSKLS--- 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH---
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC-CceEEEecCcHHHHHHHHhhh---
Confidence 457788999999999987542 389999999999997654 3333433321 146999999988776665443
Q ss_pred hcccCcEEEEEEcCcchHHHHHHh---cCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHH
Q 015158 131 GDYLGVKVHACVGGTSVREDQRIL---SSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQ 207 (412)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~ 207 (412)
+.....++ ...... ......+.. ........++++|+||+|.+. ...+..+..
T Consensus 95 ----~~~~~T~h------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~ 150 (459)
T 3upu_A 95 ----GKEASTIH------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLS 150 (459)
T ss_dssp ----SSCEEEHH------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHH
T ss_pred ----ccchhhHH------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHH
Confidence 11111111 000000 000011111 112234568999999999753 345556666
Q ss_pred hCCCCceEEEEeec
Q 015158 208 LLPPKIQVGVFSAT 221 (412)
Q Consensus 208 ~~~~~~~~i~~SAT 221 (412)
.++...+++++.-.
T Consensus 151 ~~~~~~~~~~vGD~ 164 (459)
T 3upu_A 151 TIPPWCTIIGIGDN 164 (459)
T ss_dssp HSCTTCEEEEEECT
T ss_pred hccCCCEEEEECCH
Confidence 66666666666544
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.48 E-value=9e-07 Score=88.27 Aligned_cols=69 Identities=20% Similarity=0.167 Sum_probs=54.3
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
..+++.|++|+..++.+...+|.||+|+|||.+....+. .+... .+.++++++||..-++++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~-~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVY-HLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHH-HHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHH-HHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 458999999999998888889999999999987654443 33221 3458999999999999888877654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.34 E-value=6.5e-05 Score=74.01 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
..+++-|++|+.. .+..++|.|+.|||||.+...-+...+.. +....+++++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 3589999999984 35678999999999999887766666554 2344589999999999999999988764
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.05 E-value=7.5e-05 Score=65.16 Aligned_cols=123 Identities=14% Similarity=0.100 Sum_probs=89.9
Q ss_pred chhhHHHHHHHHHhc--CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCc
Q 015158 262 EEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 339 (412)
Q Consensus 262 ~~~~~~~l~~~~~~~--~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~ 339 (412)
.+.|...+..++... .+.+++||++..+..+-+.+++..+++.+..+.|.....++. -.++...+.+.|...+
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 355777777777665 347999999999999999999999999999999985543211 1244555666677777
Q ss_pred CCCC-----CCCCCEEEEccCCCChhhH-HHhhhhcccCC----CCceEEEEeccCcHHH
Q 015158 340 RGID-----VQQVSLVINYDLPTQPENY-LHRIGRSGRFG----RKGVAINFVTRDDERM 389 (412)
Q Consensus 340 ~G~d-----~~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~g----~~g~~~~~~~~~~~~~ 389 (412)
-|+| +..++.||.++..|++..= +|++-|+.|.| ++-.++.+++....++
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 7776 6789999999999999885 99999999973 3456888887776654
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.70 E-value=0.00037 Score=63.09 Aligned_cols=71 Identities=8% Similarity=0.013 Sum_probs=54.9
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.|+|+|+..+..+...+..++..+-+.|||......++..+.. .++..++++.|+...+..+++.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4899999999877655678999999999998766555543332 2456899999999988888877776553
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.51 E-value=0.00067 Score=65.76 Aligned_cols=146 Identities=10% Similarity=0.091 Sum_probs=86.1
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccC--cEE
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLG--VKV 138 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~ 138 (412)
.|+|+|+..+..+...+..++..+-|+|||.+....++..+... ++..++++.|+...+....+.++.+....+ +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 38999999998875567789999999999987655444444332 455899999999999988888877654432 111
Q ss_pred EEE-EcCcchHHHHHHhcCCCcEEEeC--hHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCC--CCc
Q 015158 139 HAC-VGGTSVREDQRILSSGVHVVVGT--PGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLP--PKI 213 (412)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~~~~~iii~T--~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~--~~~ 213 (412)
... ....... +.++..|.+.+ +..+.- .+.+++|+||+|...+. ...+..+...+. .+.
T Consensus 242 ~~~~~~~~~i~-----~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~ 305 (592)
T 3cpe_A 242 GIVEWNKGSIE-----LDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRS 305 (592)
T ss_dssp CEEEECSSEEE-----ETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCC
T ss_pred ccccCCccEEE-----ecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCc
Confidence 000 0111100 12233444333 232211 24679999999986442 233333333332 233
Q ss_pred eEEEEeecCCh
Q 015158 214 QVGVFSATMPP 224 (412)
Q Consensus 214 ~~i~~SAT~~~ 224 (412)
.+.+..|+..
T Consensus 306 -~ii~isTP~~ 315 (592)
T 3cpe_A 306 -KIIITTTPNG 315 (592)
T ss_dssp -EEEEEECCCT
T ss_pred -eEEEEeCCCC
Confidence 4555556654
No 105
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.41 E-value=0.00042 Score=56.80 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=30.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
|+-.++.+++|+|||..++-.+.+....+ .+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccC
Confidence 44557899999999998877777666554 48999999764
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.38 E-value=0.00039 Score=56.48 Aligned_cols=40 Identities=15% Similarity=0.081 Sum_probs=29.6
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.|+-.++.+++|+|||..++-.+.+....+ .+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g---~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAK---QKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEecc
Confidence 355678899999999988776666555444 4899999874
No 107
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.35 E-value=0.00026 Score=69.98 Aligned_cols=70 Identities=16% Similarity=0.125 Sum_probs=56.3
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhhc
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALGD 132 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 132 (412)
.|++-|++++... +..++|.|+.|||||.+..--+...+.. +....++++++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 3889999999864 5688999999999998877666655543 33446899999999999999999887643
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.35 E-value=0.00044 Score=57.59 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=53.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILS 155 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (412)
|.-.++.+++|+|||+.++..+......+ .+++++.|...- + . ...+....++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~-r--~--~~~i~srlG~~~----------------- 66 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDT-R--S--IRNIQSRTGTSL----------------- 66 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCG-G--G--CSSCCCCCCCSS-----------------
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCc-h--H--HHHHHHhcCCCc-----------------
Confidence 55678899999999988877666655444 378888876531 0 0 001111111110
Q ss_pred CCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhh
Q 015158 156 SGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEML 194 (412)
Q Consensus 156 ~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~ 194 (412)
..+-+.+.+.+...+.... ....+++||+||++.+.
T Consensus 67 --~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 --PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSC
T ss_pred --cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCc
Confidence 1233455666666655432 23457999999999643
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.28 E-value=0.00081 Score=54.37 Aligned_cols=39 Identities=18% Similarity=0.018 Sum_probs=28.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
|+-.++.+|+|+|||..++..+......+ .+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g---~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGK---KKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTT---CEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeecc
Confidence 55678899999999988766555544433 4788888874
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.23 E-value=0.00098 Score=61.09 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=65.0
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcC
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSS 156 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (412)
+-.++.|+.|+|||....-. +.. .+.++++|++++++++.+.+.+. +. . .
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~~~----~~~lVlTpT~~aa~~l~~kl~~~----~~--------~----------~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----VNF----EEDLILVPGRQAAEMIRRRANAS----GI--------I----------V 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----CCT----TTCEEEESCHHHHHHHHHHHTTT----SC--------C----------C
T ss_pred cEEEEEcCCCCCHHHHHHHH----hcc----CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----------c
Confidence 45688999999999765321 111 25799999999998888776432 10 0 0
Q ss_pred CCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 157 GVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 157 ~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
....-+.|.++++.. ......-..+++|+||+-.+ +. ..+..++...+. .+++++.-+
T Consensus 212 ~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm~-~~---~~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 ATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLML-HT---GCVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGGS-CH---HHHHHHHHHTTC-SEEEEEECT
T ss_pred cccceEEEeHHhhcC--CCCCCCCcCCEEEEeCcccC-CH---HHHHHHHHhCCC-CEEEEecCc
Confidence 112447787776532 11111224789999999853 33 233344444443 556666555
No 111
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.22 E-value=0.00085 Score=55.55 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=31.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
|+-.++.+++|+|||..++..+.+....+ .+++++-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g---~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT---CCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEeecCC
Confidence 55668899999999998887777665554 48999988764
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.14 E-value=0.00079 Score=66.94 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=56.4
Q ss_pred CCChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhh
Q 015158 60 EKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-GLVECQALVLAPTRELAQQIEKVMRALG 131 (412)
Q Consensus 60 ~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~ 131 (412)
..|++.|++|+... +..++|.|+.|||||.+...-+...+.. +....++|+++.|+..+.++.+.+....
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 35899999999873 5678999999999999887766666553 3344689999999999999998887753
No 113
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.14 E-value=0.0016 Score=52.35 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=22.6
Q ss_pred hHHHHhhhhhhh---------cCccEEEECCCCCCchhHhH
Q 015158 63 SAIQQRGIVPFC---------KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 63 ~~~Q~~a~~~~~---------~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.|++++..+. .++.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 345555555443 36789999999999997653
No 114
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00034 Score=54.43 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.7
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.++.+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999765
No 115
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.09 E-value=0.0013 Score=58.77 Aligned_cols=36 Identities=17% Similarity=0.108 Sum_probs=26.4
Q ss_pred ChHHHHhhhhhhhc----C---ccEEEECCCCCCchhHhHHHH
Q 015158 62 PSAIQQRGIVPFCK----G---LDVIQQAQSGTGKTATFCSGI 97 (412)
Q Consensus 62 l~~~Q~~a~~~~~~----~---~~~lv~~~tGsGKT~~~~~~~ 97 (412)
++|||.+++..+.. | ...++.||.|+|||..+...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 57888888776553 3 247999999999998765433
No 116
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.06 E-value=0.0062 Score=50.52 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeec
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSAT 221 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 221 (412)
....+||+||+|.+... ....+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeCC
Confidence 45679999999986543 245566666666666655555543
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.05 E-value=0.00056 Score=55.94 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=28.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
|.-.++.+++|+|||..++..+......+ .+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g---~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAK---QKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC---CceEEEEeccC
Confidence 55568899999999987766665554443 47899999764
No 118
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.04 E-value=0.00096 Score=70.33 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=57.5
Q ss_pred CChHHHHhhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCC---CceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 61 KPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGL---VECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+..+. ...+++++++|++.+.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3899999999875 779999999999999998877777766543 4568999999999999999888764
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.00 E-value=0.0029 Score=56.27 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=22.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+..+++.||+|+|||..+- .+...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEE
Confidence 4689999999999997653 333333221 23455554
No 120
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.89 E-value=0.0026 Score=51.21 Aligned_cols=38 Identities=13% Similarity=0.057 Sum_probs=29.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
++-.++.+|+|+|||.-.+..+.+....+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~---~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ---YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT---CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEEccc
Confidence 55678899999999977777776665544 489999886
No 121
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.0095 Score=52.38 Aligned_cols=40 Identities=8% Similarity=0.135 Sum_probs=25.4
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHh---CCCCceEEEEeecCC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQL---LPPKIQVGVFSATMP 223 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~---~~~~~~~i~~SAT~~ 223 (412)
..-+|++||+|.+.. ...+..++.. -....-+|+.++|+.
T Consensus 132 ~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 456899999999872 2444444431 223456778888874
No 122
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.007 Score=46.51 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.0
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..+.++++.+|+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34678999999999999765
No 123
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.69 E-value=0.01 Score=53.94 Aligned_cols=19 Identities=32% Similarity=0.314 Sum_probs=16.2
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 124
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.50 E-value=0.0083 Score=55.73 Aligned_cols=38 Identities=13% Similarity=0.046 Sum_probs=23.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
.+.+++.||+|+|||..+- ++...+....++..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEee
Confidence 3579999999999997653 3333332222233455554
No 125
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.48 E-value=0.018 Score=44.25 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=24.9
Q ss_pred eEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 183 RIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 183 ~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
+.+++||+|.+... ....+..++...+.+.++|+.|...
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEECCcC
Confidence 57999999986543 3445555555555566666655544
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.46 E-value=0.0057 Score=59.06 Aligned_cols=113 Identities=19% Similarity=0.257 Sum_probs=71.1
Q ss_pred CChHHHHhhhhhhhc--CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEE
Q 015158 61 KPSAIQQRGIVPFCK--GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKV 138 (412)
Q Consensus 61 ~l~~~Q~~a~~~~~~--~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 138 (412)
.++..|.+++..+.. ....++.|+-|.|||.+.=+++. .+. . .++|.+|+..-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~-~----~~~vtAP~~~a~~~l~~----~~~~----- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIA-G----RAIVTAPAKASTDVLAQ----FAGE----- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSS-S----CEEEECSSCCSCHHHHH----HHGG-----
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHH-h----CcEEECCCHHHHHHHHH----HhhC-----
Confidence 578999999998876 34578999999999955433333 332 1 46999999875553332 2110
Q ss_pred EEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEE
Q 015158 139 HACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVF 218 (412)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 218 (412)
.+-+..|+.+.. .....+++|||||=.+. ...+..++...+ .+++
T Consensus 240 --------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~~----~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRFP----RTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTSS----EEEE
T ss_pred --------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhCC----eEEE
Confidence 133445555431 11357999999998652 345555555332 5777
Q ss_pred eecCC
Q 015158 219 SATMP 223 (412)
Q Consensus 219 SAT~~ 223 (412)
|.|..
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 77764
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.34 E-value=0.017 Score=46.60 Aligned_cols=138 Identities=14% Similarity=0.127 Sum_probs=71.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH-HHHHHHHHHHHhhcccCcEEEEEEcCcchHH-HHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE-LAQQIEKVMRALGDYLGVKVHACVGGTSVRE-DQRI 153 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (412)
...+++..++|.|||.+++..++..+..+. +++++.=.+. ....-.+.+..+ ++.......+..... ....
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 357899999999999999888888887764 7888843221 000001111222 222221111100000 0000
Q ss_pred hcCCCcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCchhhccC--cHHHHHHHHHhCCCCceEEEEeecCChHHHH
Q 015158 154 LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADEMLSRG--FKDQIYDIFQLLPPKIQVGVFSATMPPEALE 228 (412)
Q Consensus 154 ~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~ 228 (412)
+.. .--..|..... .+....+++||+||+-.....+ -...+..++...+....+|+.+--+++.+.+
T Consensus 101 -----~~~-~a~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 101 -----DTA-ACMAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp -----HHH-HHHHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred -----HHH-HHHHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 000 00112222211 2223578999999997654444 2456777777777777666666666654433
No 128
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.27 E-value=0.0068 Score=51.06 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=16.8
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.++.+++.||+|+|||..+-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997653
No 129
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.24 E-value=0.058 Score=46.38 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.||+|+|||..+-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578999999999997763
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.19 E-value=0.017 Score=51.20 Aligned_cols=40 Identities=10% Similarity=0.155 Sum_probs=25.9
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
..+++++||+|.+........+..++...+.+..+|+.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5789999999987623334556666665555666665443
No 131
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.17 E-value=0.014 Score=47.78 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.7
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
+.+++.||+|+|||..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999997653
No 132
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.13 E-value=0.015 Score=52.98 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=23.5
Q ss_pred EEEEeCCchhhccCcHHH-HHHHHHhCCCCceEEEEeecC
Q 015158 184 IFVLDEADEMLSRGFKDQ-IYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 184 ~iiiDE~h~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~ 222 (412)
+||+||+|.+........ +..+.... .+..+|+.|..+
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDI 174 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSST
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCC
Confidence 999999999875432344 55555544 455555555443
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.12 E-value=0.005 Score=54.28 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999997763
No 134
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.06 E-value=0.044 Score=50.37 Aligned_cols=129 Identities=17% Similarity=0.219 Sum_probs=68.3
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc-C-CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA-P-TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
..+++.+++|+|||++....+...... +.+++++. + .+.-+ .+++..+....++.+.......
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~--------- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQ--------- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCS---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccC---------
Confidence 457889999999997764433322222 34666655 3 22222 2333333333344332111110
Q ss_pred cCCCcEEEeChHHHH-HHHHcCCCCCCCceEEEEeCCchhh---ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHH
Q 015158 155 SSGVHVVVGTPGRVF-DMLRRQSLRPDNIRIFVLDEADEML---SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEIT 230 (412)
Q Consensus 155 ~~~~~iii~T~~~l~-~~~~~~~~~~~~~~~iiiDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 230 (412)
.|..+. ..+... ...+++++|+|++-+.. +..+...+..+.....+...++.++|+...+.....
T Consensus 163 ---------dp~~i~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 163 ---------NPIEIAKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp ---------CHHHHHHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred ---------CHHHHHHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 121111 222221 12468999999997533 333456666777666667778889998765444443
Q ss_pred H
Q 015158 231 R 231 (412)
Q Consensus 231 ~ 231 (412)
.
T Consensus 232 ~ 232 (433)
T 3kl4_A 232 S 232 (433)
T ss_dssp H
T ss_pred H
Confidence 3
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.99 E-value=0.019 Score=49.84 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=29.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh--hhcCccEEEECCCCCCchhHh
Q 015158 39 DTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVP--FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~--~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+|+++.-.+...+.+...-.. +. ...+.+.. +..++.+++.||+|+|||..+
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVEL-PL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHH-HH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHH-Hh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 4566776566666665431100 00 01111111 234578999999999999765
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.02 Score=50.66 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=26.1
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
....++|+||+|.+... ....+..++...+.+..+++.+.
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 35679999999987543 24556666666666666555443
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0083 Score=54.71 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.0
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999997763
No 138
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.85 E-value=0.1 Score=47.96 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=65.2
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc-C-CHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHh
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA-P-TRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRIL 154 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~-P-~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (412)
..+++.+++|+|||++..-.+.. +.. .+.+++++. . .+.-+ .+++..+....++.+.......
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~-l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~--------- 165 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARY-FQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEK--------- 165 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH-HHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCC---------
T ss_pred eEEEEECcCCCCHHHHHHHHHHH-HHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCC---------
Confidence 45788999999999876543333 222 234666655 2 23322 3444455544465543221111
Q ss_pred cCCCcEEEeChHHHH-HHHHcCCCCCCCceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHH
Q 015158 155 SSGVHVVVGTPGRVF-DMLRRQSLRPDNIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITR 231 (412)
Q Consensus 155 ~~~~~iii~T~~~l~-~~~~~~~~~~~~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 231 (412)
.|..+. ..+... ...++++||+|.+-... +......+..+.....+...++.+.|+...+......
T Consensus 166 ---------dp~~i~~~al~~a--~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~ 233 (443)
T 3dm5_A 166 ---------DAIKLAKEGVDYF--KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQAL 233 (443)
T ss_dssp ---------CHHHHHHHHHHHH--HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHH
T ss_pred ---------CHHHHHHHHHHHH--HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHH
Confidence 111111 111110 01247889999875432 1123344555555555666678888886554444333
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.067 Score=47.98 Aligned_cols=43 Identities=12% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
.+..++|+||+|. .+......+.+.+...+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 3568999999998 444445667777777766766666665543
No 140
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.022 Score=51.13 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=26.1
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
...++++||+|.+... ....+..++...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 4579999999987543 24556666666666666665543
No 141
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.56 E-value=0.038 Score=44.12 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4678999999999997654
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.034 Score=49.13 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=24.8
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+||+||+|.+.... ...+..++...+.+..+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999865432 344555566655566666655
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.34 E-value=0.055 Score=47.38 Aligned_cols=39 Identities=5% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+.... ...+.+.+..-+++..+|+.|
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 457899999999875443 455666666666566555554
No 144
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.27 E-value=0.043 Score=48.57 Aligned_cols=54 Identities=9% Similarity=-0.027 Sum_probs=30.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHH-hhhhh-hhcCccEEEECCCCCCchhHhH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQ-RGIVP-FCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~-~a~~~-~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
-.+|+++.-.+...+.+...-. +|... +.+.. ....+.+++.||+|+|||..+-
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 3467777666677666653210 11110 00011 1123579999999999997763
No 145
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.26 E-value=0.14 Score=42.72 Aligned_cols=39 Identities=8% Similarity=0.271 Sum_probs=22.9
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEee
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSA 220 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 220 (412)
...+||+||+|.+... ....+...+...+.+..+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEeC
Confidence 4579999999986433 23444445554444555555543
No 146
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.19 E-value=0.082 Score=47.85 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.1
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.||+|+|||..+-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.088 Score=46.94 Aligned_cols=39 Identities=18% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
...+++|+||+|.+... ....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 34789999999987543 3456667777766666655544
No 148
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.60 E-value=0.078 Score=52.77 Aligned_cols=79 Identities=19% Similarity=0.179 Sum_probs=65.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEEE
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVIN 352 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi~ 352 (412)
+.+++|.++++.-+.+.++.+++ .+..+..++|+++..++..+++.+.+|+.+|+|+|. .+...+++.++..||+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 46899999999888777766654 478999999999999999999999999999999998 4455678888888886
Q ss_pred ccCC
Q 015158 353 YDLP 356 (412)
Q Consensus 353 ~~~~ 356 (412)
.+..
T Consensus 497 DEaH 500 (780)
T 1gm5_A 497 DEQH 500 (780)
T ss_dssp ESCC
T ss_pred cccc
Confidence 5543
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.55 E-value=0.024 Score=50.04 Aligned_cols=17 Identities=41% Similarity=0.515 Sum_probs=14.7
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
++++.||+|+|||..+-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 58999999999997653
No 150
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.53 E-value=0.077 Score=50.38 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=26.3
Q ss_pred CCceEEEEeCCchhhccC--cHHHHHHHHHhCCCCceEEEEeecCC
Q 015158 180 DNIRIFVLDEADEMLSRG--FKDQIYDIFQLLPPKIQVGVFSATMP 223 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~ 223 (412)
....+|++||+|.+.... ....+..++.. ...++|+++++..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 345799999999876543 22444455444 2455777777653
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.49 E-value=0.12 Score=46.62 Aligned_cols=39 Identities=8% Similarity=0.294 Sum_probs=23.9
Q ss_pred CCceEEEEeCCchhhccCcHHHHHHHHHhCCCCceEEEEe
Q 015158 180 DNIRIFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 180 ~~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....++|+||+|.+.... ...+...+...+.+..+|+.|
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 346799999999875432 344555555555555444444
No 152
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.47 E-value=0.027 Score=52.26 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=15.4
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.+++++||+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 468999999999997763
No 153
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.25 E-value=0.041 Score=48.77 Aligned_cols=51 Identities=27% Similarity=0.289 Sum_probs=32.4
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
+..|.-+++.|++|+|||..++..+...... +.+++|+..-.. ..|+..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCC-HHHHHHHH
Confidence 3346678999999999997766555544432 347888775332 34444444
No 154
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.18 E-value=0.45 Score=39.71 Aligned_cols=43 Identities=16% Similarity=-0.103 Sum_probs=26.6
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCC
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPT 116 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~ 116 (412)
..|.-+.+.+|+|+|||..+...+...+... .....++++...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3467789999999999987655444322210 012356776543
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.89 E-value=0.15 Score=47.49 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=28.2
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
+..|.-++|.|++|+|||..++..+...... .+.+++|+..-
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E 241 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE 241 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC
Confidence 4456778999999999997765555544332 12368887754
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.79 E-value=0.15 Score=44.89 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
...+++.||+|+|||..+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999997653
No 157
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.67 E-value=0.1 Score=48.41 Aligned_cols=52 Identities=19% Similarity=0.001 Sum_probs=31.8
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
+..|.-++|.|++|+|||..++..+...... .+.+++++..-.. ..|+...+
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSC-HHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCC-HHHHHHHH
Confidence 3345678999999999997765555544432 1346888765322 33444443
No 158
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.43 E-value=0.11 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=15.3
Q ss_pred CccEEE--ECCCCCCchhHhH
Q 015158 76 GLDVIQ--QAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv--~~~tGsGKT~~~~ 94 (412)
+..++| .||+|+|||..+-
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHH
Confidence 356788 8999999997654
No 159
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.28 E-value=0.21 Score=45.83 Aligned_cols=79 Identities=10% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCc---CCCCCCCCCE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLA---RGIDVQQVSL 349 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~---~G~d~~~~~~ 349 (412)
...++||.+|+++-+.++++.+++ .+..+..++|+.+..++....+.+..|+.+|+|+|+ .+. .-++...++.
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 457899999999999999999988 578999999999999998899999999999999998 221 1245567888
Q ss_pred EEEccC
Q 015158 350 VINYDL 355 (412)
Q Consensus 350 vi~~~~ 355 (412)
+|+-+.
T Consensus 143 iViDEa 148 (414)
T 3oiy_A 143 VFVDDV 148 (414)
T ss_dssp EEESCH
T ss_pred EEEeCh
Confidence 886554
No 160
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.19 E-value=0.24 Score=46.51 Aligned_cols=43 Identities=26% Similarity=0.364 Sum_probs=27.9
Q ss_pred ceEEEEeCCchhhccC----------cHHHHHHHHHhCCCCceEEEEeecCCh
Q 015158 182 IRIFVLDEADEMLSRG----------FKDQIYDIFQLLPPKIQVGVFSATMPP 224 (412)
Q Consensus 182 ~~~iiiDE~h~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT~~~ 224 (412)
.++|++||+|.+.... ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999876421 223445555555556667777777654
No 161
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.08 E-value=0.15 Score=45.28 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.6
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.++++.||+|+|||..+-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997763
No 162
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=92.88 E-value=0.95 Score=37.08 Aligned_cols=104 Identities=7% Similarity=0.142 Sum_probs=66.8
Q ss_pred CcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-C-----cCCCCCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQV 347 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~G~d~~~~ 347 (412)
.++||.+++++-+.++++.+++. +..+..++|+.+..... +.+.++..+|+|+|+- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999998888777653 67889999998765543 3344567789999961 1 234667788
Q ss_pred CEEEEccCCCC--hhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 348 SLVINYDLPTQ--PENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 348 ~~vi~~~~~~s--~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
+.+|+.+...- ...+...+.+..+.-..+.-+++++..
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 199 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 199 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEee
Confidence 88886543211 123334444444433334455566554
No 163
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.79 E-value=1.7 Score=37.78 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHhHH
Q 015158 77 LDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~ 95 (412)
+.+++.+++|+|||+....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4577899999999976543
No 164
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.64 E-value=2.7 Score=36.37 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=22.1
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
.++.+.+.++.|+|||..+...+...... +.+++++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEec
Confidence 45567788999999997654333222222 24566654
No 165
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.55 E-value=0.93 Score=38.14 Aligned_cols=112 Identities=10% Similarity=0.189 Sum_probs=68.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC------cCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL------ARGIDVQ 345 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~------~~G~d~~ 345 (412)
...++||.+++++-+.++++.+++. +..+..++|+.+.......+ .+..+|+|+|+ .+ ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 3467999999999988888777653 77888999988765543322 24678999996 11 2456778
Q ss_pred CCCEEEEccCC----CChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHH
Q 015158 346 QVSLVINYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395 (412)
Q Consensus 346 ~~~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 395 (412)
.++.+|+.+.. ++.......+-+.. ....-+++++..-...+..+.+
T Consensus 186 ~~~~lViDEah~l~~~~~~~~l~~i~~~~---~~~~~~l~~SAT~~~~v~~~~~ 236 (249)
T 3ber_A 186 ALKYLVMDEADRILNMDFETEVDKILKVI---PRDRKTFLFSATMTKKVQKLQR 236 (249)
T ss_dssp TCCEEEECSHHHHHHTTCHHHHHHHHHSS---CSSSEEEEEESSCCHHHHHHHH
T ss_pred ccCEEEEcChhhhhccChHHHHHHHHHhC---CCCCeEEEEeccCCHHHHHHHH
Confidence 88888865432 11222222332222 2234456666654444444443
No 166
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=91.89 E-value=0.79 Score=42.77 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCCCcCCCCCC
Q 015158 266 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 345 (412)
Q Consensus 266 ~~~l~~~~~~~~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~~~~G~d~~ 345 (412)
...+...++. .+.++++.|.|...++.+.+.|.+.++........ . .+ ....+.++...+..|+.+|
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~--~~g~v~i~~g~L~~GF~~p 437 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EA--SDRGRYLMIGAAEHGFVDT 437 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GC--CTTCEEEEESCCCSCEEET
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hc--CCCcEEEEEcccccCcccC
Confidence 3455555543 24689999999999999999999988765544321 0 11 2345777888899999999
Q ss_pred CCCEEEEccC
Q 015158 346 QVSLVINYDL 355 (412)
Q Consensus 346 ~~~~vi~~~~ 355 (412)
..+.+++.+.
T Consensus 438 ~~klaVITE~ 447 (483)
T 3hjh_A 438 VRNLALICES 447 (483)
T ss_dssp TTTEEEEEHH
T ss_pred CCCEEEEEch
Confidence 9888887654
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.33 E-value=1 Score=35.39 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=53.5
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
...++||.|+++..++.+.+.+... +..+..++|+.+....... ..+...|+|+| .. ...+++...
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT-----~~-~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT-----NV-CARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC-----CS-CCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----cc-hhcCCCccc
Confidence 3458999999999998888877764 7788889988765544322 24577899999 22 244667778
Q ss_pred ceEEEEeC
Q 015158 182 IRIFVLDE 189 (412)
Q Consensus 182 ~~~iiiDE 189 (412)
+++||.-+
T Consensus 103 ~~~Vi~~d 110 (175)
T 2rb4_A 103 VTIVVNFD 110 (175)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 88888544
No 168
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.86 E-value=7.9 Score=33.99 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=29.8
Q ss_pred hHHHHHHHHcCCCCCCCceEEEEeCCchhhc---cCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 165 PGRVFDMLRRQSLRPDNIRIFVLDEADEMLS---RGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 165 ~~~l~~~~~~~~~~~~~~~~iiiDE~h~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
.+.+...+..... .--+||+||+|.+.. ..+...+..+....+ +.. +.++++.
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~~ 179 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGSE 179 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEESS
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcCc
Confidence 4445555543211 234899999999764 345556666665542 443 4455553
No 169
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=90.76 E-value=1.1 Score=34.70 Aligned_cols=73 Identities=16% Similarity=0.275 Sum_probs=53.3
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCce
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNIR 183 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 183 (412)
.++||.|+++..++.+.+.+... +..+..++|+.+....... ..+...|+|+| .. ...+++...++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~-~~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DV-AARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GG-GTTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Ch-hhcCCchhcCC
Confidence 47999999999999998888775 7788899988765443222 24567899999 22 23466777788
Q ss_pred EEEEeCC
Q 015158 184 IFVLDEA 190 (412)
Q Consensus 184 ~iiiDE~ 190 (412)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8876544
No 170
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.67 E-value=0.091 Score=48.24 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=36.5
Q ss_pred hhccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+-.+|++.+-.+...+.|... ++..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 4556899988777777776532 2333444444332 22468999999999999775
No 171
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.25 E-value=0.32 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=28.6
Q ss_pred CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 58 ~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..-+.-|+.++..+..|..+.+.+|.|+|||+.+
T Consensus 4 ~i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 4 VIRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred ccccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 344345567888888988999999999999999654
No 172
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=90.23 E-value=1.6 Score=33.94 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=53.4
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
..++||.|+++..++...+.+... +..+..++|+.+....... ..+...|+|+| .. ...+++...+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DL-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GG-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Ch-hhcCCCcccC
Confidence 357999999999999888888775 6778889988765444322 24667899999 22 2346677778
Q ss_pred eEEEEeCC
Q 015158 183 RIFVLDEA 190 (412)
Q Consensus 183 ~~iiiDE~ 190 (412)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 88877554
No 173
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.92 E-value=1 Score=47.12 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=64.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCCCCCCCEEE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 351 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d~~~~~~vi 351 (412)
.+.+++|.+++..-+.+.++.+++ .+..+..+++..+..++..+++.+.+|+.+|+|+|. .+...+.+.++..||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 446899999999988888777764 367889999999999999999999999999999997 556667788888777
Q ss_pred Ecc
Q 015158 352 NYD 354 (412)
Q Consensus 352 ~~~ 354 (412)
+-+
T Consensus 731 iDE 733 (1151)
T 2eyq_A 731 VDE 733 (1151)
T ss_dssp EES
T ss_pred Eec
Confidence 544
No 174
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.86 E-value=0.29 Score=42.88 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=16.8
Q ss_pred CccEEEECCCCCCchhHhHH
Q 015158 76 GLDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~ 95 (412)
++++++.||+|+|||..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976543
No 175
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.64 E-value=3.7 Score=32.05 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=53.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
..++||.|+++..++.+.+.+... +..+..++|+......... ..+...|+|+|. . ...+++...+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hhcCcchhhC
Confidence 347999999999999888888775 6788889988765443222 346788999992 1 2345666777
Q ss_pred eEEEEeCCc
Q 015158 183 RIFVLDEAD 191 (412)
Q Consensus 183 ~~iiiDE~h 191 (412)
++||.-+..
T Consensus 101 ~~Vi~~d~p 109 (172)
T 1t5i_A 101 NIAFNYDMP 109 (172)
T ss_dssp SEEEESSCC
T ss_pred CEEEEECCC
Confidence 888765543
No 176
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.54 E-value=0.26 Score=41.31 Aligned_cols=51 Identities=20% Similarity=0.126 Sum_probs=32.1
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
..|..+++.+|+|+|||..++..+...... +.+++++..... ..+..+.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCC-HHHHHHHHH
Confidence 346778999999999998765544444332 246777765432 344444444
No 177
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.45 E-value=0.68 Score=48.17 Aligned_cols=79 Identities=10% Similarity=0.223 Sum_probs=65.0
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcC---CCCCCCCCE
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLAR---GIDVQQVSL 349 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~---G~d~~~~~~ 349 (412)
.+.++||.+|+++-+.++++.+++ .++.+..++|+.+..++...++.+.+|+.+|+|+|+ .+.. -+++..+++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456899999999999999999988 567899999999998888999999999999999997 2211 144567888
Q ss_pred EEEccC
Q 015158 350 VINYDL 355 (412)
Q Consensus 350 vi~~~~ 355 (412)
+|+-+.
T Consensus 200 lViDEa 205 (1104)
T 4ddu_A 200 VFVDDV 205 (1104)
T ss_dssp EEESCH
T ss_pred EEEeCC
Confidence 886554
No 178
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=89.32 E-value=0.62 Score=38.62 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=52.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-C-----cCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQ 345 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~G~d~~ 345 (412)
...++||.+++++-+.++++.+++. +..+..++|+.+..++...+ ...+|+|+|+- + ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 3468999999999999888888653 67788899988766544332 25789999972 1 2345677
Q ss_pred CCCEEEEcc
Q 015158 346 QVSLVINYD 354 (412)
Q Consensus 346 ~~~~vi~~~ 354 (412)
.++.+|+-+
T Consensus 166 ~~~~lViDE 174 (230)
T 2oxc_A 166 SIRLFILDE 174 (230)
T ss_dssp GCCEEEESS
T ss_pred cCCEEEeCC
Confidence 788887544
No 179
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=89.08 E-value=1.6 Score=35.17 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=66.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-C----Cc-CCCCCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-L----LA-RGIDVQQ 346 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~----~~-~G~d~~~ 346 (412)
..++||.+++++-+.++++.+++. +..+..++|+.+..+... .+ .+..+|+|+|+ . +. ..+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 357999999999988888777542 567888888877554322 12 34678999997 1 22 2345677
Q ss_pred CCEEEEccCCC-ChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHH-HHHHhc
Q 015158 347 VSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFD-IQKFYN 398 (412)
Q Consensus 347 ~~~vi~~~~~~-s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~-~~~~~~ 398 (412)
++.+|+.+... ....+...+.+..+.-+.+.-+++++..-...+.. +.+++.
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 88887644320 11122222333322212344556666654443333 344443
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.07 E-value=0.18 Score=45.65 Aligned_cols=54 Identities=26% Similarity=0.324 Sum_probs=34.2
Q ss_pred hccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 37 VYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
|-.+|++.+--+...+.|... ++..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHH
Confidence 446788887666666666532 2333333333322 23467999999999999775
No 181
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.01 E-value=1.4 Score=35.91 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=52.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
+.++||.|+++.-++...+.+... +..+..++|+.+....... ..+..+|+|+| +.+ ..+++..++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chh-hcCCCCccC
Confidence 348999999999999888888775 7788899998775544322 34667899999 322 346677778
Q ss_pred eEEEE
Q 015158 183 RIFVL 187 (412)
Q Consensus 183 ~~iii 187 (412)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88774
No 182
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.86 E-value=0.23 Score=49.62 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.9
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
++++.||+|+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998763
No 183
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=88.58 E-value=2.3 Score=35.45 Aligned_cols=112 Identities=8% Similarity=0.023 Sum_probs=68.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CC-cCCCCCCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL-ARGIDVQQV 347 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~-~~G~d~~~~ 347 (412)
..++||.+++++-+.++.+.+++ .+..+..++|+.+.......+.. ..+|+|+|+ .+ ...+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 46799999999998888777654 47889999999887665444432 478999997 11 234567788
Q ss_pred CEEEEccCC----CChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 348 SLVINYDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 348 ~~vi~~~~~----~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
+.+|+.+.. ++.......+ .+.-.+..-+++++..-...+..+.+.
T Consensus 178 ~~lViDEah~l~~~~~~~~~~~i---~~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 178 TYLVLDEADRMLDMGFEPQIRKI---VDQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp CEEEETTHHHHHHTTCHHHHHHH---HTTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred cEEEEeCHHHHhhhCcHHHHHHH---HHhCCccceEEEEEeecCHHHHHHHHH
Confidence 888865432 1111222222 222223445666766654444444433
No 184
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=88.42 E-value=2.9 Score=33.43 Aligned_cols=72 Identities=21% Similarity=0.244 Sum_probs=52.7
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCce
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNIR 183 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 183 (412)
.++||.|+++.-++.+.+.+... ++.+..++|+.+....... ..+...|+|+| ..+. .+++...++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCC
Confidence 47999999999999998888775 7788889988765443222 24678899999 3332 366777788
Q ss_pred EEEEeC
Q 015158 184 IFVLDE 189 (412)
Q Consensus 184 ~iiiDE 189 (412)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 877644
No 185
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.37 E-value=1 Score=42.73 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=55.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 336 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~ 336 (412)
.+++||.+|.+.-+....+.|++.+..+..+++..+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 47899999999999999999999999999999999999999999999999999999997
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.32 E-value=3.3 Score=36.39 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=33.7
Q ss_pred CceEEEEeCCchhh-ccCcHHHHHHHHHhCCCCceEEEEeecCChHHHHHHHHh
Q 015158 181 NIRIFVLDEADEML-SRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKF 233 (412)
Q Consensus 181 ~~~~iiiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 233 (412)
+.+++++|.+...- .......+..+...+.+...++.+.++...+.......+
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 45678899876532 233455666666666667778888888766555554443
No 187
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.04 E-value=4.7 Score=32.29 Aligned_cols=115 Identities=8% Similarity=0.045 Sum_probs=67.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-C----C-cCCCCCCCCCE
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-L----L-ARGIDVQQVSL 349 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~----~-~~G~d~~~~~~ 349 (412)
..+++|.+++++.+.++++.+++. +..+..++|+.+.......+. ...+|+|+|+ . + ...+++..++.
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 467999999999999999888765 357778888776544333222 2578999996 1 1 23456778888
Q ss_pred EEEccCCCC-hhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 350 VINYDLPTQ-PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 350 vi~~~~~~s-~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
+|+.+...- ...+...+.+..+.-..+.-+++++..-...+..+.+.
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 195 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAER 195 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHH
T ss_pred EEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHH
Confidence 886543210 01122222222222233455666766644444444443
No 188
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.91 E-value=0.2 Score=46.10 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=34.2
Q ss_pred hhccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.|-.+|++.+--+...+.|... ++..|..++... +...+.+++.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 3446788887667777776542 222222222221 223578999999999999765
No 189
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.58 E-value=0.2 Score=43.76 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=29.7
Q ss_pred cccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHhH
Q 015158 39 DTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 39 ~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+|+++.-.+...+.+... ....+..++.. .+..++.+++.||+|+|||..+-
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHc---CCCCCceEEEECCCCcCHHHHHH
Confidence 4667776556665555431 11111111111 12346789999999999997763
No 190
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.38 E-value=0.18 Score=46.37 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=33.5
Q ss_pred hhccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+-.+|++.+--+...+.+... ++..|..++... +...+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4456788886556666555431 222233333322 223468999999999999875
No 191
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.34 E-value=2.1 Score=34.08 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=50.8
Q ss_pred CCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHH----HHHhcCCCcEE
Q 015158 86 GTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVRED----QRILSSGVHVV 161 (412)
Q Consensus 86 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ii 161 (412)
.+.|-. .+.-++... ..+.++||.|+++.-++.+.+.+... ++.+..++|+.+.... .....+...|+
T Consensus 29 ~~~K~~-~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 345653 333444332 23458999999999999888888774 6778888887654332 22234677899
Q ss_pred EeChHHHHHHHHcCCCCCCCceEEEEeC
Q 015158 162 VGTPGRVFDMLRRQSLRPDNIRIFVLDE 189 (412)
Q Consensus 162 i~T~~~l~~~~~~~~~~~~~~~~iiiDE 189 (412)
|+| ..+ ..+++...+++||.-+
T Consensus 101 vaT-----~~~-~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VAT-----AVA-ARGLDISNVKHVINFD 122 (185)
T ss_dssp EEE-----C-------CCCSBSEEEESS
T ss_pred EEc-----Chh-hcCCCcccCCEEEEeC
Confidence 999 222 2355666777777633
No 192
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=87.10 E-value=0.32 Score=51.13 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=34.7
Q ss_pred EEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 015158 80 IQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMR 128 (412)
Q Consensus 80 lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 128 (412)
+|.|+.|||||.+.+--+...+..+..+.++++++|... .-++.+.+.
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~ 52 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELA 52 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHT
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHH
Confidence 789999999999988777776665544568999999764 333444443
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.04 E-value=0.59 Score=44.04 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=20.7
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhh
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQL 101 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 101 (412)
+..|..+++.||||||||+.. -+++..+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL-~aL~~~i 284 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTL-NAIMMFI 284 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHH-HHHGGGS
T ss_pred HhCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence 456788999999999999764 3344443
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=86.93 E-value=14 Score=33.75 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=21.9
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+..+.+.++.|+|||++....+..... .+.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~---~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEee
Confidence 345677899999999766443332222 234566654
No 195
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.84 E-value=0.84 Score=41.76 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHhhhhhhh--cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 65 IQQRGIVPFC--KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 65 ~Q~~a~~~~~--~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
-+..++..+. .+..++|.+|||||||+.. .+++..+... ...++++-
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~--~g~I~~~e 202 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSS--ERNILTVE 202 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCT--TSCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCC--CCEEEEec
Confidence 3444555443 3456789999999999764 3344444321 23455543
No 196
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.60 E-value=0.71 Score=43.32 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.5
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
+.++.+++|.++||||||.+.-..+.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cccCceEEEECCCCCCHHHHHHHHHH
Confidence 33467899999999999977544443
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=86.57 E-value=1.1 Score=43.12 Aligned_cols=59 Identities=3% Similarity=0.025 Sum_probs=53.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH--hcCCCcEEEEcC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF--RSGSSRVLITTD 336 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f--~~g~~~vlv~t~ 336 (412)
.+.+||.+|+++-++...+.|++.|+.+..++|+.+..++..+...+ ..+..+++++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 47899999999999999999999999999999999999998888888 467899999998
No 198
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=86.56 E-value=4.4 Score=28.23 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=67.0
Q ss_pred EEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC--CcCCC-----CCCCCCEEEEc
Q 015158 281 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LARGI-----DVQQVSLVINY 353 (412)
Q Consensus 281 ~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~--~~~G~-----d~~~~~~vi~~ 353 (412)
.+||.+..+...++.+.++..|..+..++++.....|..-++.|.....++--.-+. +.+.+ --|.+++|++.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvvviv 84 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIV 84 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 467778888888999999999999999999999998888888888754443222110 00000 03456666554
Q ss_pred cCCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhc
Q 015158 354 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 398 (412)
Q Consensus 354 ~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (412)
... +..=..-.+--+.-.| -.+++++.+.+...-+..++.+.
T Consensus 85 ttd-dkewikdfieeakerg--vevfvvynnkdddrrkeaqqefr 126 (162)
T 2l82_A 85 TTD-DKEWIKDFIEEAKERG--VEVFVVYNNKDDDRRKEAQQEFR 126 (162)
T ss_dssp ECC-CHHHHHHHHHHHHHTT--CEEEEEEECSCHHHHHHHHHHHC
T ss_pred ecC-cHHHHHHHHHHHHhcC--cEEEEEecCCCchhHHHHHHHhh
Confidence 432 1111111222222221 35666666666665555555444
No 199
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.54 E-value=0.23 Score=45.50 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=33.0
Q ss_pred hhccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+-.+|++.+--+...+.+... ++..|..++...+ ...+.+++.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHHH
Confidence 3445788886556666555431 2222333333222 23467999999999999775
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.38 E-value=0.57 Score=38.73 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=25.3
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
+..|..+++.+|+|+|||..+...+...... +.+++++..
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEc
Confidence 3456778999999999997654433333222 235766653
No 201
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.35 E-value=0.43 Score=38.48 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=15.9
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
++-+++.+|||+|||..++
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5678999999999997654
No 202
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=86.34 E-value=8.3 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhhhhhhcCccEEEECCCCCCchhHhHHHHHH
Q 015158 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ 99 (412)
Q Consensus 68 ~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~ 99 (412)
+.+..+.+|+..++.++.|+|||..+...+.+
T Consensus 143 D~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 143 DLLAPYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHSCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 44555667899999999999999776544433
No 203
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.30 E-value=0.39 Score=40.90 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.6
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+++.+|+|||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778899999999999764
No 204
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.17 E-value=0.63 Score=42.96 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=29.3
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQ 121 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 121 (412)
...+++|.|+||+|||......+.+.+.. +..++|+=|-.++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~---g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLR---GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHT---TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEeCCCchhH
Confidence 35789999999999998753333333333 246777777666543
No 205
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.06 E-value=0.85 Score=40.89 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.7
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34689999999999998763
No 206
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=86.04 E-value=4.4 Score=36.72 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=53.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
.+.++||.|+++..++.+.+.+.+. +..+..++|+......... ..+..+|+|+| ..+ ..+++..+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chh-hcCCCccc
Confidence 4568999999999999888888775 6788889988775544322 24677899999 333 34677778
Q ss_pred ceEEEE
Q 015158 182 IRIFVL 187 (412)
Q Consensus 182 ~~~iii 187 (412)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.96 E-value=0.78 Score=40.23 Aligned_cols=53 Identities=15% Similarity=-0.034 Sum_probs=33.5
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
+..|.-++|.|++|+|||..++..+......+ .++++++-- .-..|+...+..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC-CCHHHHHHHHHH
Confidence 44567789999999999977665555444332 468887754 223444444443
No 208
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.94 E-value=0.49 Score=38.78 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=24.6
Q ss_pred hcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 74 CKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
..|.-+++.+++|+|||..+...+. . .+.+++++.-
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 3467789999999999976654443 2 2236777664
No 209
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.93 E-value=1.2 Score=46.79 Aligned_cols=53 Identities=26% Similarity=0.231 Sum_probs=41.4
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccC---------CCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYG---------LVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~---------~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
..+|.|+.|||||.+...-++..+... ....++|+|+=|++-+.++.+++.+.
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 459999999999988877777766431 22457999999999888888877664
No 210
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=85.91 E-value=1.3 Score=36.83 Aligned_cols=75 Identities=15% Similarity=0.233 Sum_probs=45.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CCc-CCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~-~G~d~~~ 346 (412)
...++||.+++++.+.++++.+++. +..+...+|+.+.. ...+.+..+..+|+|+|+ .+. ..+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 3468999999999999888888653 55677777765432 233444556789999995 222 3356777
Q ss_pred CCEEEEcc
Q 015158 347 VSLVINYD 354 (412)
Q Consensus 347 ~~~vi~~~ 354 (412)
++.+|+-+
T Consensus 174 ~~~lViDE 181 (237)
T 3bor_A 174 IKMFVLDE 181 (237)
T ss_dssp CCEEEEES
T ss_pred CcEEEECC
Confidence 88887644
No 211
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.89 E-value=0.41 Score=40.14 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=30.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
|.-+++.|++|+|||..++..+.+..... +..++|+.-.. -.++..+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~-~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE-RARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS-CHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccC-CHHHHHHHHHH
Confidence 46789999999999977665554433221 23577766432 24445544443
No 212
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.83 E-value=0.95 Score=39.80 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=32.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccC---------CCc----eeEEEEcCCHHH-HHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYG---------LVE----CQALVLAPTREL-AQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---------~~~----~~~lil~P~~~L-~~q~~~~~~~~ 130 (412)
|.-+++.+++|+|||..++..+....... ..+ .+++|+.-...+ .+++.+.+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 45689999999999977765555432110 112 578888765432 34444444443
No 213
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.71 E-value=1.8 Score=35.84 Aligned_cols=115 Identities=10% Similarity=0.078 Sum_probs=65.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC----c--CCCCCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL----A--RGIDVQQ 346 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~----~--~G~d~~~ 346 (412)
..++||.+++++-+.++++.+++. +..+..++|+.+.......+ +..+|+|+|+ .+ . ..+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 467999999999998888888654 46788888886544332222 3678999996 22 1 2366777
Q ss_pred CCEEEEccCCCC-hhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHh
Q 015158 347 VSLVINYDLPTQ-PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 397 (412)
Q Consensus 347 ~~~vi~~~~~~s-~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~ 397 (412)
++.+|+.+...- ...+...+.+..+.-..+.-+++++..-...+..+.+.+
T Consensus 172 ~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 172 LQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp CCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred ccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 888886543210 001122222222222234446666666554455554443
No 214
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=85.64 E-value=0.53 Score=37.18 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=41.7
Q ss_pred ChHHHHhhhhhhhcC--ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHH
Q 015158 62 PSAIQQRGIVPFCKG--LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQ 122 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~--~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 122 (412)
..+-|..++..++.. +-.+|.+.-|++|+...+..++..... .+.++.+++|+..-...
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMN 95 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHH
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHH
Confidence 456789999998754 467789999999998754444433322 34689999999765443
No 215
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.61 E-value=13 Score=34.76 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=22.2
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
.+++++++|+|||+.+.-.+...... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 57788999999997764443332222 345666654
No 216
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.48 E-value=0.23 Score=42.69 Aligned_cols=54 Identities=15% Similarity=0.179 Sum_probs=26.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHH-HHhhhhhh--hcCccEEEECCCCCCchhHh
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAI-QQRGIVPF--CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~-Q~~a~~~~--~~~~~~lv~~~tGsGKT~~~ 93 (412)
+-.+|++.+-.+++.+.+...-. .|+ ..+++..+ .-.+.+++.||+|+|||+.+
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777766666666653111 111 11222221 11244899999999999765
No 217
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.45 E-value=8.1 Score=34.53 Aligned_cols=105 Identities=7% Similarity=0.141 Sum_probs=66.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC-----cCCCCCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 346 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~-----~~G~d~~~ 346 (412)
..++||.|+++.-+.++++.+++. +..+..++|+.+...... .+.++..+|+|+|. .+ ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 358999999999999888877653 678999999887655443 34456788999996 22 23456778
Q ss_pred CCEEEEccCCC--ChhhHHHhhhhcccCCCCceEEEEeccC
Q 015158 347 VSLVINYDLPT--QPENYLHRIGRSGRFGRKGVAINFVTRD 385 (412)
Q Consensus 347 ~~~vi~~~~~~--s~~~~~Q~~GR~~R~g~~g~~~~~~~~~ 385 (412)
++.||+.+... ....+...+-+..+.-....-+++++..
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 88888654321 1123333333333333334445555544
No 218
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.39 E-value=0.5 Score=37.50 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=16.4
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.|+-+++.||+|+|||...-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46678899999999997653
No 219
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.25 E-value=0.5 Score=37.52 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=15.9
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
...+++.||+|+|||..+-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997653
No 220
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.06 E-value=0.94 Score=42.51 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=23.2
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
...-+.+...+..+.++++.||+|+|||..+
T Consensus 28 ~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 28 SHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3333445555667889999999999999765
No 221
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.01 E-value=0.4 Score=38.96 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.4
Q ss_pred hhhcCccEEEECCCCCCchhHhH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
++..++-+++.||+|+|||..+-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHH
Confidence 35567889999999999997653
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.00 E-value=0.63 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.5
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999765
No 223
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.76 E-value=0.55 Score=37.95 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=17.0
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.++.+++.|++|+|||+.+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998763
No 224
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.69 E-value=0.91 Score=37.41 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=20.2
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccC
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYG 104 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~ 104 (412)
++++.++.|+|||..++-.+......+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G 34 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG 34 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 688999999999988766555544443
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=84.59 E-value=0.51 Score=41.59 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=15.7
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
++.++|.||||+|||..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468899999999997764
No 226
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.53 E-value=9.2 Score=36.36 Aligned_cols=89 Identities=11% Similarity=0.128 Sum_probs=60.8
Q ss_pred HHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHH
Q 015158 96 GILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDM 171 (412)
Q Consensus 96 ~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~ 171 (412)
.+...+.....+.++||.|+++.-++.+++.+..... .+..+..++|+......... ..+..+|+|+|. .
T Consensus 328 ~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~ 401 (563)
T 3i5x_A 328 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V 401 (563)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G
T ss_pred HHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h
Confidence 3333343334456899999999999999988887532 26778888888765544322 346789999993 2
Q ss_pred HHcCCCCCCCceEEEEeCCc
Q 015158 172 LRRQSLRPDNIRIFVLDEAD 191 (412)
Q Consensus 172 ~~~~~~~~~~~~~iiiDE~h 191 (412)
...+++..++++||.-..-
T Consensus 402 -~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 402 -GARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp -GTSSCCCTTCCEEEEESCC
T ss_pred -hhcCCCcccCCEEEEECCC
Confidence 3457777888888765543
No 227
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.46 E-value=1.2 Score=39.28 Aligned_cols=54 Identities=17% Similarity=0.086 Sum_probs=32.2
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc---CCCceeEEEEcCCHHH-HHHHHHHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVECQALVLAPTREL-AQQIEKVMRA 129 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~~~L-~~q~~~~~~~ 129 (412)
|.-+++.+++|+|||..++..+...... +..+.+++|+.-...+ ..++.+.+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999997776555543322 1113578888765432 3334433444
No 228
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.42 E-value=0.99 Score=40.96 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=28.1
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.+.+++|.++||+|||...-..+..... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH---CCCEEEEEeCCcC
Confidence 4678999999999999766444443332 2346777777544
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.39 E-value=0.99 Score=39.20 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.2
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5689999999999997653
No 230
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.34 E-value=0.37 Score=43.90 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=34.6
Q ss_pred hhccccccCCCCHHHHHHHHH---CCCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 36 EVYDTFDAMGLQENLLRGIYA---YGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 36 ~~~~~f~~~~l~~~~~~~l~~---~~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+-.+|++.+=-+...+.|.. .++..|..++...+ .-.+.+++.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 455688888655666555543 23333444443332 22467999999999999765
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=84.33 E-value=0.35 Score=38.73 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.3
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+++.||+|||||+.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 445777899999999999765
No 232
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=83.89 E-value=0.36 Score=42.68 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=19.3
Q ss_pred hhhhhcCccEEEECCCCCCchhHh
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
...+..++++++.||+|+|||..+
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334556789999999999999765
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.75 E-value=0.5 Score=38.30 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.1
Q ss_pred hcCccEEEECCCCCCchhHhH
Q 015158 74 CKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~ 94 (412)
..|..+.+.||+|||||+.+-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356778899999999997653
No 234
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.65 E-value=1.2 Score=42.16 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=25.4
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCC-ceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLV-ECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~-~~~~lil~P~ 116 (412)
..+++|.+.||||||.+.-..++..+....+ ..+++++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 4589999999999998765555544433222 2344444443
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=83.63 E-value=0.49 Score=38.31 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.0
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|+.+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999765
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=83.59 E-value=0.72 Score=41.14 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=28.0
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
|.-++|.+|+|+|||..++..+...... +.+++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEeccccc
Confidence 5678899999999997765555443332 2468888765444
No 237
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=83.55 E-value=0.57 Score=42.03 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.0
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+++.+|||||||+..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 456889999999999999754
No 238
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=83.52 E-value=0.54 Score=37.22 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.9
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.++.+++.|++|+|||..+-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46679999999999998764
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=83.48 E-value=0.67 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.3
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.|.-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 45678899999999997653
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=83.46 E-value=0.52 Score=37.15 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.3
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+++.|++|||||..+
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456789999999999876
No 241
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.36 E-value=0.99 Score=40.30 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=28.5
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.|.-+++.+++|+|||..++..+......+ .+++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCC
Confidence 356789999999999988766555544332 3688877643
No 242
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=83.30 E-value=0.68 Score=36.75 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=16.1
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.|++|||||..+-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998764
No 243
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.19 E-value=0.9 Score=40.49 Aligned_cols=40 Identities=13% Similarity=0.094 Sum_probs=28.3
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
.|.-+++.+++|+|||..++..+...... +.+++|+....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 46778999999999998776655554433 34688877543
No 244
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.16 E-value=1.9 Score=36.60 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=28.4
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcCc-----cEEEECCCCCCchhHhH
Q 015158 49 NLLRGIYAYGFEKPSAIQQRGIVPFCKGL-----DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 49 ~~~~~l~~~~~~~l~~~Q~~a~~~~~~~~-----~~lv~~~tGsGKT~~~~ 94 (412)
.+.+.|.-.|+. |-.+ ..++..+++++ .+++.||+|+|||..+.
T Consensus 74 ~i~~~l~~qg~~-~~~~-~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD-PQYA-ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC-HHHH-HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566677666766 3322 22344455442 48899999999998764
No 245
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.05 E-value=1.6 Score=35.30 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcC----ccEEEECCCCCCchhHh
Q 015158 48 ENLLRGIYAYGFEKPSAIQQRGIVPFCKG----LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 48 ~~~~~~l~~~~~~~l~~~Q~~a~~~~~~~----~~~lv~~~tGsGKT~~~ 93 (412)
..+.+.|.--++. +-.+ ...+..++++ +.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3455555433333 4444 3344444443 35889999999999765
No 246
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.92 E-value=0.9 Score=36.77 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=16.6
Q ss_pred cEEEECCCCCCchhHhHHHHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGILQ 99 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~ 99 (412)
-.++.|++|||||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3589999999999876544443
No 247
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=82.88 E-value=7.3 Score=32.47 Aligned_cols=113 Identities=10% Similarity=0.046 Sum_probs=65.3
Q ss_pred CcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC-----cCCCCCCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQVS 348 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~-----~~G~d~~~~~ 348 (412)
.++||.+++++-+.++++.+++ .+..+..++|+.+....... . ....+|+|+|+ .+ ...+++..++
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---V-QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---H-SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 5899999999999888877764 35677788887765443222 2 34678999997 22 2235677788
Q ss_pred EEEEccCC----CC-hhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHH
Q 015158 349 LVINYDLP----TQ-PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 395 (412)
Q Consensus 349 ~vi~~~~~----~s-~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 395 (412)
.+|+.+.. ++ ...+...+.+.......+.-+++++..-...+..+.+
T Consensus 177 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 177 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred EEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHH
Confidence 88754432 11 1222223332222211244566666654444444443
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=82.84 E-value=0.51 Score=36.93 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998764
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=82.84 E-value=0.59 Score=37.24 Aligned_cols=20 Identities=35% Similarity=0.605 Sum_probs=16.7
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|++|||||.++-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998763
No 250
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.79 E-value=12 Score=35.82 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=57.7
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH----HhcCCCcEEEeChHHHHHHHHcCCCCCC
Q 015158 105 LVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILSSGVHVVVGTPGRVFDMLRRQSLRPD 180 (412)
Q Consensus 105 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~ 180 (412)
..+.++||.|+++.-++.+++.+..... .+..+..++|+........ ...+...|+|+|. . ...+++..
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~-~~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-hhcCCCcc
Confidence 3456899999999999999988887532 2677888888876544322 2346789999993 3 34577778
Q ss_pred CceEEEEeCCc
Q 015158 181 NIRIFVLDEAD 191 (412)
Q Consensus 181 ~~~~iiiDE~h 191 (412)
++++||.-..-
T Consensus 359 ~v~~VI~~~~p 369 (579)
T 3sqw_A 359 NVHEVLQIGVP 369 (579)
T ss_dssp TCCEEEEESCC
T ss_pred cCCEEEEcCCC
Confidence 88888876644
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.70 E-value=0.44 Score=42.02 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=29.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHH-hhhhh-hhcCccEEEECCCCCCchhHhH
Q 015158 38 YDTFDAMGLQENLLRGIYAYGFEKPSAIQQ-RGIVP-FCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 38 ~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~-~a~~~-~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
-.+|++++-.+...+.|...-. +|.+. +.+.. ....+.+++.||+|+|||..+-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHhCHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 3467777666666666643100 11110 01111 1223679999999999997763
No 252
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=82.61 E-value=7.9 Score=34.56 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=56.2
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
...++||.|+++.-++.+.+.+... +..+..++|+.+....... ..+..+|+|+|. ....+++..+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3458999999999999888888775 6778888988765544322 245678999993 2345777888
Q ss_pred ceEEEEeCCc
Q 015158 182 IRIFVLDEAD 191 (412)
Q Consensus 182 ~~~iiiDE~h 191 (412)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9988876654
No 253
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.57 E-value=0.56 Score=40.64 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999997753
No 254
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.52 E-value=1.3 Score=39.41 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=27.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccC---CCceeEEEEcCCH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYG---LVECQALVLAPTR 117 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~---~~~~~~lil~P~~ 117 (412)
|.-+++.+++|+|||..++..+....... ..+.+++|+....
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35678999999999977765555432211 1234788887654
No 255
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.36 E-value=2.7 Score=34.57 Aligned_cols=74 Identities=8% Similarity=0.125 Sum_probs=48.7
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-C-----CcCCCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-L-----LARGIDVQQV 347 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~-----~~~G~d~~~~ 347 (412)
...++||.+++++-+.++++.+++ .+..+..++|+.+...+... +. ...+|+|+|+ . ....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 346799999999999999888876 36778888887654433222 22 3578999996 1 1235667788
Q ss_pred CEEEEcc
Q 015158 348 SLVINYD 354 (412)
Q Consensus 348 ~~vi~~~ 354 (412)
+.+|+.+
T Consensus 169 ~~lViDE 175 (228)
T 3iuy_A 169 TYLVIDE 175 (228)
T ss_dssp CEEEECC
T ss_pred eEEEEEC
Confidence 8888654
No 256
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.26 E-value=2.2 Score=48.36 Aligned_cols=47 Identities=23% Similarity=0.148 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCCChHHHHhh----hhhhhcCccEEEECCCCCCchhHhHH
Q 015158 48 ENLLRGIYAYGFEKPSAIQQRG----IVPFCKGLDVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 48 ~~~~~~l~~~~~~~l~~~Q~~a----~~~~~~~~~~lv~~~tGsGKT~~~~~ 95 (412)
..+.+.+...++. +.+.+..- .+.+..+..++++||||+|||.++-.
T Consensus 892 ~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 892 QCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 4556666677777 56655332 23344567899999999999987643
No 257
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.15 E-value=0.73 Score=40.12 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=14.7
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.-++|.||||+|||..+.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 456889999999997764
No 258
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=82.14 E-value=0.64 Score=36.41 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.3
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+++.|+.|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999765
No 259
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=82.08 E-value=0.77 Score=38.82 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 39 ~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4678999999999997653
No 260
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=82.06 E-value=0.54 Score=36.97 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=16.9
Q ss_pred hcCccEEEECCCCCCchhHhH
Q 015158 74 CKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~~ 94 (412)
..|.-+.+.||.|||||+.+-
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 356678899999999997653
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.05 E-value=0.64 Score=37.59 Aligned_cols=19 Identities=42% Similarity=0.403 Sum_probs=16.1
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|.-+.+.||+|+|||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999765
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.04 E-value=0.71 Score=41.58 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=17.3
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+++.+|||||||+..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345778899999999999764
No 263
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=82.01 E-value=0.72 Score=40.21 Aligned_cols=42 Identities=10% Similarity=-0.066 Sum_probs=30.7
Q ss_pred cEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHH
Q 015158 78 DVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELA 120 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 120 (412)
.+++.+|+|+|||..++..+......+ .+.+++|+..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCceEEEEeccchhh
Confidence 578999999999988777666655431 245789988766553
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.96 E-value=1.2 Score=38.64 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=16.9
Q ss_pred CccEEEECCCCCCchhHhHHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGI 97 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~ 97 (412)
++.+++.+++|+|||+.+...+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4578889999999997664433
No 265
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.72 E-value=3.4 Score=47.58 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhh----hhcCccEEEECCCCCCchhHhH
Q 015158 48 ENLLRGIYAYGFEKPSAIQQRGIVP----FCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 48 ~~~~~~l~~~~~~~l~~~Q~~a~~~----~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
..+.+.....++. +.+.+..=+-. +..+..++++||||+|||.++-
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 5566667778887 66665543333 3346778999999999998874
No 266
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.67 E-value=0.53 Score=41.64 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=17.5
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|+|||||+..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 446889999999999999743
No 267
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.61 E-value=3.4 Score=35.77 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=53.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
..++||.|+++.-++.+.+.+... ++.+..++|+.+....... ..+..+|+|+| +.+ ..+++..++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va-~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVA-ARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STT-TCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chh-hcCccccce
Confidence 358999999999888888777664 7888899998765544322 24678899999 332 346677788
Q ss_pred eEEEEeCCc
Q 015158 183 RIFVLDEAD 191 (412)
Q Consensus 183 ~~iiiDE~h 191 (412)
++||.=+.+
T Consensus 98 ~~VI~~d~p 106 (300)
T 3i32_A 98 DLVVHYRMP 106 (300)
T ss_dssp SEEEESSCC
T ss_pred eEEEEcCCC
Confidence 888754443
No 268
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.46 E-value=0.77 Score=41.00 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.7
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+++.||||||||+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4557899999999999764
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.26 E-value=0.74 Score=37.87 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.4
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|.-+.+.||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 345778899999999999764
No 270
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.22 E-value=1.3 Score=40.93 Aligned_cols=41 Identities=17% Similarity=0.037 Sum_probs=29.1
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT 116 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 116 (412)
+..|.-++|.|++|+|||..++..+.+.... +.+++|++--
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 3345678999999999998776666555443 3478887753
No 271
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=81.18 E-value=0.64 Score=39.30 Aligned_cols=18 Identities=33% Similarity=0.324 Sum_probs=15.3
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356899999999999765
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.15 E-value=0.7 Score=36.81 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998763
No 273
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=81.10 E-value=1.7 Score=35.56 Aligned_cols=73 Identities=14% Similarity=0.143 Sum_probs=45.8
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-C-----cCCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~~G~d~~~ 346 (412)
...++||.+++++-+.++++.+++ .+..+..++|+.+..+.... + .+.+|+|+|+- + ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999999998888887764 36778888887654433222 2 23789999962 1 23556777
Q ss_pred CCEEEEcc
Q 015158 347 VSLVINYD 354 (412)
Q Consensus 347 ~~~vi~~~ 354 (412)
++.+|+.+
T Consensus 156 ~~~iViDE 163 (224)
T 1qde_A 156 IKMFILDE 163 (224)
T ss_dssp CCEEEEET
T ss_pred CcEEEEcC
Confidence 88888654
No 274
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.78 E-value=2.6 Score=37.82 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.1
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997763
No 275
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=80.71 E-value=1 Score=36.34 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.6
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.|+-+++.||+|+|||...-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 46778999999999997653
No 276
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.65 E-value=0.79 Score=36.54 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.1
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45688999999999765
No 277
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.61 E-value=1.1 Score=39.10 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.5
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+.++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999765
No 278
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.60 E-value=0.7 Score=36.05 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|+.|||||+.+-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998763
No 279
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.58 E-value=0.69 Score=41.10 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3569999999999997653
No 280
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=80.55 E-value=1.4 Score=36.89 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=18.7
Q ss_pred hhcCccEEEECCCCCCchhHhHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~ 96 (412)
+..|.-+.+.+|+|+|||+.+...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHH
Confidence 445778899999999999765433
No 281
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=80.53 E-value=0.6 Score=40.46 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.7
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
..+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 56788999999999765
No 282
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=80.53 E-value=0.86 Score=38.50 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=14.1
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.||+|||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36889999999997763
No 283
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.51 E-value=0.86 Score=39.58 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
-++|.+|||+|||..+.
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46889999999997764
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.47 E-value=0.73 Score=36.20 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=15.4
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+++.|+.|||||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567889999999999765
No 285
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=80.14 E-value=0.63 Score=36.98 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.9
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
|..+++.|++|||||+.+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998763
No 286
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.13 E-value=1.3 Score=39.62 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=28.3
Q ss_pred cCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRE 118 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 118 (412)
.|.-++|.+++|+|||..++..+...... +.+++|+..-..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCC
Confidence 35678899999999998776655554433 246788775443
No 287
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=80.06 E-value=0.84 Score=36.88 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.1
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+++.|+.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3667889999999999765
No 288
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.91 E-value=0.76 Score=36.20 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 46889999999998763
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=79.85 E-value=0.81 Score=35.67 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.8
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
+++++.++.|||||+++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998764
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.68 E-value=0.88 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.8
Q ss_pred hhhcCccEEEECCCCCCchhHh
Q 015158 72 PFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..|.-+.+.+|.|+|||+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888899999999999754
No 291
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.57 E-value=0.82 Score=37.92 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=14.0
Q ss_pred hhhcCccEEEECCCCCCchhHh
Q 015158 72 PFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..|.-+.+.||+|+|||+..
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEECCCEEEEECSCC----CHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3456777889999999999765
No 292
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.11 E-value=0.92 Score=40.64 Aligned_cols=25 Identities=48% Similarity=0.616 Sum_probs=18.5
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQL 101 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~ 101 (412)
++.+++.||+|+|||..+- .+...+
T Consensus 70 ~~~vLl~GppGtGKT~la~-~la~~l 94 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM-GMAQAL 94 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH-HHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH-HHHHHh
Confidence 3579999999999998764 333343
No 293
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.11 E-value=1.6 Score=39.32 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.3
Q ss_pred hhhcCccEEEECCCCCCchhHhH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+-.|+.+.+.+|+|+|||..+.
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHH
Confidence 35568999999999999997664
No 294
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.85 E-value=2.8 Score=35.84 Aligned_cols=27 Identities=15% Similarity=0.043 Sum_probs=20.8
Q ss_pred hhhcCccEEEECCCCCCchhHhHHHHH
Q 015158 72 PFCKGLDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
-+..|.-++|.+|+|+|||+.+...+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455678899999999999976654443
No 295
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.81 E-value=23 Score=32.40 Aligned_cols=116 Identities=13% Similarity=0.157 Sum_probs=70.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC-CC---eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCc-----CCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR-DH---TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLA-----RGIDVQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~-----~G~d~~~ 346 (412)
...++||.|+++.-+.+..+.+.+. +. .+..++|+....++..... ..+|+|+|. .+. ..++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999998888888765 44 7899999988776654443 467999986 221 2456667
Q ss_pred CCEEEEccCCC--ChhhHHHhhhhcccCCCCceEEEEecc---CcHHHHHHHHHHhc
Q 015158 347 VSLVINYDLPT--QPENYLHRIGRSGRFGRKGVAINFVTR---DDERMLFDIQKFYN 398 (412)
Q Consensus 347 ~~~vi~~~~~~--s~~~~~Q~~GR~~R~g~~g~~~~~~~~---~~~~~~~~~~~~~~ 398 (412)
++.||+-+... +...+.+...+..+..+ ..-++.++. .+...+..+..++.
T Consensus 126 ~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~-~~~~l~lTaTp~~~~~~~~~l~~~l~ 181 (494)
T 1wp9_A 126 VSLIVFDEAHRAVGNYAYVFIAREYKRQAK-NPLVIGLTASPGSTPEKIMEVINNLG 181 (494)
T ss_dssp CSEEEEETGGGCSTTCHHHHHHHHHHHHCS-SCCEEEEESCSCSSHHHHHHHHHHTT
T ss_pred ceEEEEECCcccCCCCcHHHHHHHHHhcCC-CCeEEEEecCCCCCcHHHHHHHHhcC
Confidence 88888655432 12233333333322222 222333333 23455555665554
No 296
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.48 E-value=2.4 Score=36.80 Aligned_cols=111 Identities=9% Similarity=0.029 Sum_probs=64.3
Q ss_pred CcEEEEEcchhHHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCC-C-----c-CCCCCCC
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----A-RGIDVQQ 346 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~~-~-----~-~G~d~~~ 346 (412)
.++||.+++++-+.++++.++.. +..+....++...... .....+|+|+|+- + . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 47999999999999887777653 4566777766432211 1345689999972 1 1 3567888
Q ss_pred CCEEEEccCCCCh--hhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHH
Q 015158 347 VSLVINYDLPTQP--ENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 396 (412)
Q Consensus 347 ~~~vi~~~~~~s~--~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 396 (412)
++++|+-+...-. ..|...+-+..+.-....-+++++..-...+..+.+.
T Consensus 236 l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp CSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred ceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 9998865432100 1222222233333233455666666644444444433
No 297
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.22 E-value=1 Score=37.06 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=16.5
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
...|.-+++.||.|+|||+..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778899999999999764
No 298
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.16 E-value=1.2 Score=35.31 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=24.8
Q ss_pred EEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 015158 79 VIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRA 129 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 129 (412)
++|.+++|||||.-+...+. . +.+++|+......-.++.+.+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~-----~--~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG-----D--APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC-----S--CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHh-----c--CCCeEEEecCCCCCHHHHHHHHH
Confidence 58899999999976643221 1 23578888765544444444443
No 299
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=77.97 E-value=7 Score=32.92 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=51.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CC--cCCCCCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL--ARGIDVQQ 346 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~--~~G~d~~~ 346 (412)
..++||.+++++-+.+.++.+++ .+..+..+.|+......... +..+ .+|+|+|+ .+ ..++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 46799999999999888887765 35677888888765544332 3333 78999995 11 23567788
Q ss_pred CCEEEEcc
Q 015158 347 VSLVINYD 354 (412)
Q Consensus 347 ~~~vi~~~ 354 (412)
++.+|+-+
T Consensus 202 l~~lViDE 209 (262)
T 3ly5_A 202 LQCLVIDE 209 (262)
T ss_dssp CCEEEECS
T ss_pred CCEEEEcC
Confidence 88888644
No 300
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=77.93 E-value=1.1 Score=39.16 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.6
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.++|.||||+|||..+.
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997764
No 301
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=77.90 E-value=1.8 Score=37.34 Aligned_cols=41 Identities=17% Similarity=0.034 Sum_probs=26.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP 115 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 115 (412)
+..|.-++|.|++|+|||..+...+...... .+.+++++..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeC
Confidence 4457788999999999997654433333222 1235766654
No 302
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.86 E-value=9 Score=34.38 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=53.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
..++||.|+++.-++...+.+... +..+..++|+......... ..+...|+|+|. ....+++...+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 358999999999999888888776 6778888888765444222 245678999992 22456777788
Q ss_pred eEEEEeC
Q 015158 183 RIFVLDE 189 (412)
Q Consensus 183 ~~iiiDE 189 (412)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8877543
No 303
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.57 E-value=1.1 Score=36.44 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=15.5
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|..+.|.+|+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567789999999999654
No 304
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=77.47 E-value=0.99 Score=36.01 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||+.+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3467899999999998763
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=77.40 E-value=1.3 Score=36.39 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHhH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
+.+.+-+++.+|+||||++.+-
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 3345667889999999998764
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=77.40 E-value=2.2 Score=37.43 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=21.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
++.+.+.+++|+|||++....+...... +.+++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 3457788999999997654333222222 34666654
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.27 E-value=0.92 Score=36.17 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=15.6
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4567899999999998763
No 308
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.20 E-value=1.3 Score=39.49 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999997763
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=76.99 E-value=0.87 Score=36.31 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=14.5
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
.-+++.+|+|+|||+.+-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 346789999999997653
No 310
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=76.95 E-value=1.1 Score=37.71 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.5
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+.+++.+|+|+|||..+
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999765
No 311
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=76.92 E-value=1 Score=36.54 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=18.3
Q ss_pred hhhhhcCccEEEECCCCCCchhHh
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
++.+..+..+.+.|++|||||+.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 334455667889999999999765
No 312
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=76.80 E-value=8.5 Score=34.73 Aligned_cols=72 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCce
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNIR 183 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~ 183 (412)
.++||.|+++..++...+.+... +..+..++|+......... ..+...|+|+|. ....+++..+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 47999999999999888888775 6778888988765443322 245678999993 234577788888
Q ss_pred EEEEeC
Q 015158 184 IFVLDE 189 (412)
Q Consensus 184 ~iiiDE 189 (412)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888644
No 313
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.80 E-value=1 Score=39.23 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=15.3
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468999999999997763
No 314
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=76.77 E-value=9.4 Score=34.36 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=54.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
..++||.|+++.-++.+.+.+... +..+..++|+......... ..+..+|+|+| .. ...+++..++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~-~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NV-CARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GG-GTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Cc-cccCCCccCC
Confidence 358999999999999998888875 6778888888765544322 24667899999 22 3457778888
Q ss_pred eEEEEeCC
Q 015158 183 RIFVLDEA 190 (412)
Q Consensus 183 ~~iiiDE~ 190 (412)
++||.-..
T Consensus 336 ~~Vi~~~~ 343 (412)
T 3fht_A 336 SVVINFDL 343 (412)
T ss_dssp EEEEESSC
T ss_pred CEEEEECC
Confidence 88885443
No 315
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.70 E-value=1.2 Score=35.87 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.5
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|+.|||||+..-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999998764
No 316
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=76.48 E-value=1.3 Score=39.01 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.5
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
-++|.||||||||..+.
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997764
No 317
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.48 E-value=1.3 Score=41.02 Aligned_cols=19 Identities=42% Similarity=0.490 Sum_probs=16.3
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999997763
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.40 E-value=1.1 Score=35.78 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.6
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|++|||||+.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678999999999998763
No 319
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=76.38 E-value=17 Score=35.52 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=57.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
+.++||.|+++..++.+.+.+... ++.+..++|+......... ..+..+|+|+|. +...+++...+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 358999999999999888888775 6778888887654443322 236788999983 23557778889
Q ss_pred eEEEEeCCchh
Q 015158 183 RIFVLDEADEM 193 (412)
Q Consensus 183 ~~iiiDE~h~~ 193 (412)
++||+-|++..
T Consensus 515 ~lVi~~d~d~~ 525 (661)
T 2d7d_A 515 SLVAILDADKE 525 (661)
T ss_dssp EEEEETTTTCC
T ss_pred CEEEEeCcccc
Confidence 99999888753
No 320
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=76.31 E-value=5.3 Score=31.96 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=19.4
Q ss_pred CcEEEeChHHHHHHHHcCCCCCCCceEEEEeCCch
Q 015158 158 VHVVVGTPGRVFDMLRRQSLRPDNIRIFVLDEADE 192 (412)
Q Consensus 158 ~~iii~T~~~l~~~~~~~~~~~~~~~~iiiDE~h~ 192 (412)
.+++-+..+.+...+.... ..+++||+|=.-.
T Consensus 55 ~~~~~~~~~~l~~~l~~l~---~~yD~viiD~~~~ 86 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKDL---ADYDFAIVDGAGS 86 (206)
T ss_dssp SEEEECCSHHHHHTHHHHT---TTSSEEEEECCSS
T ss_pred CcEEecCcHHHHHHHHHhc---CCCCEEEEECCCC
Confidence 3455555566655554322 3589999996553
No 321
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.29 E-value=1.2 Score=34.98 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=14.7
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.+++|||||..+-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58899999999998763
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=76.25 E-value=1.5 Score=35.33 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=20.8
Q ss_pred ChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 62 PSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 62 l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..++..+ ....|..+.+.|+.|+|||+.+
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 344444332 2345677889999999999765
No 323
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=76.22 E-value=1.5 Score=35.74 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=21.6
Q ss_pred hHHHHhhhhhhhcCccEEEECCCCCCchhHhH
Q 015158 63 SAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 63 ~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.++... .+..+..+++.|++|+|||..+-
T Consensus 13 ~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 34444442 34557778899999999997653
No 324
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.13 E-value=1.3 Score=36.38 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||+.+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999998763
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=76.12 E-value=1.1 Score=36.53 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998764
No 326
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=76.11 E-value=1.3 Score=40.88 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=16.2
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997763
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=76.09 E-value=1.1 Score=36.10 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.2
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.|+.|||||+.+-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998763
No 328
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.97 E-value=1.5 Score=39.17 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=16.2
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997763
No 329
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=75.96 E-value=1.3 Score=38.30 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.4
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+.-+++.||+|||||+.+-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467899999999997763
No 330
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=75.83 E-value=14 Score=33.68 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=52.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCceE
Q 015158 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNIRI 184 (412)
Q Consensus 109 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 184 (412)
++||.|+++.-++.+.+.+... +..+..++|+......... ..+...|+|+|. +...+++..++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 4999999999999888888775 7788899988765544322 346788999993 3345777888888
Q ss_pred EEEe
Q 015158 185 FVLD 188 (412)
Q Consensus 185 iiiD 188 (412)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8763
No 331
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.52 E-value=2.9 Score=36.30 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=15.0
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+.+.+|+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456788999999999764
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=75.47 E-value=1.2 Score=36.38 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998764
No 333
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.32 E-value=2.1 Score=38.13 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=24.6
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc---CCCceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 116 (412)
|.-+.+.+|+|+|||..+...+...... +..+.+++++.-.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 3567899999999997665444332111 1112467777653
No 334
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=75.31 E-value=2.9 Score=33.05 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=16.3
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|++|+|||..+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678899999999997764
No 335
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=75.30 E-value=2 Score=38.57 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=22.4
Q ss_pred hhhhhcCccEEEECCCCCCchhHhHHHHHHhh
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQL 101 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~ 101 (412)
+..+-+|+..+|.++.|+|||..+ ..+.+.+
T Consensus 169 l~PigrGQR~lIfg~~g~GKT~Ll-~~Ia~~i 199 (427)
T 3l0o_A 169 FAPIGKGQRGMIVAPPKAGKTTIL-KEIANGI 199 (427)
T ss_dssp HSCCBTTCEEEEEECTTCCHHHHH-HHHHHHH
T ss_pred cccccCCceEEEecCCCCChhHHH-HHHHHHH
Confidence 333557899999999999999776 3344433
No 336
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=75.30 E-value=1.3 Score=34.90 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.7
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|..+.+.++.|||||+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566789999999999765
No 337
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=75.23 E-value=0.85 Score=38.78 Aligned_cols=19 Identities=32% Similarity=0.247 Sum_probs=15.7
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997763
No 338
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.19 E-value=2.6 Score=36.58 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.3
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|.-+.+.+|+|+|||+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3556789999999999765
No 339
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=75.11 E-value=1.4 Score=35.24 Aligned_cols=17 Identities=29% Similarity=0.507 Sum_probs=14.2
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+-++|.||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999754
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=75.05 E-value=1.4 Score=34.80 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.+++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 357899999999998763
No 341
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=75.01 E-value=1.3 Score=34.98 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=13.4
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
.+.+.+|.|+|||+.+
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999654
No 342
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=74.95 E-value=1.3 Score=40.11 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.3
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
.+++++.||+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997763
No 343
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.95 E-value=1.4 Score=34.40 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=14.6
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.+++|||||..+-
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CEEEESCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57899999999998763
No 344
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=74.91 E-value=1.4 Score=42.38 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=14.6
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999765
No 345
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.84 E-value=2.9 Score=41.61 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=33.5
Q ss_pred hccccccCCCCHHHHHHHHHC---CCCCChHHHHhhhhhhhcCccEEEECCCCCCchhHh
Q 015158 37 VYDTFDAMGLQENLLRGIYAY---GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~---~~~~l~~~Q~~a~~~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+-.+|++.+.-++..+.|... +...|..++.. -+...+.+++.+|+|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 345788888778888888653 22222211111 1122467899999999999765
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.66 E-value=1.5 Score=35.34 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.2
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.|++|||||+.+-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998763
No 347
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.54 E-value=2 Score=36.08 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.3
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.+++|+|||..+-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38899999999999998753
No 348
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=74.48 E-value=1.3 Score=34.98 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=11.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998764
No 349
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=74.45 E-value=3.6 Score=37.88 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=46.8
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
.+++|.||++.-++..++.+... +..+..++|............+..+|+|+| ..+ ..+++.. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT-----~v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILAT-----DIA-EMGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEES-----SST-TCCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEEC-----Chh-heeeccC-ceEEE
Confidence 57999999999999999888875 678888888554444444455678999999 333 3456667 77776
No 350
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=74.39 E-value=1.4 Score=35.73 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=15.9
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|+.|||||+.+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568899999999998764
No 351
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=74.21 E-value=4.2 Score=37.36 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=47.9
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIF 185 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~i 185 (412)
.+++|+||++.-++.+++.+.+. +..+..++|+...........+..+|+|+| ..+. .+++.. +..|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e-~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISE-MGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGG-TSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHH-cCcccC-CcEE
Confidence 47999999999999999888876 678888888754333334445778999999 4433 345554 4444
No 352
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=74.12 E-value=1.4 Score=36.26 Aligned_cols=24 Identities=17% Similarity=-0.038 Sum_probs=18.3
Q ss_pred hhcCccEEEECCCCCCchhHhHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSG 96 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~ 96 (412)
+..|.-+.+.+|+|+|||+.+...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 335677899999999999765443
No 353
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=74.01 E-value=1.9 Score=37.39 Aligned_cols=21 Identities=19% Similarity=0.040 Sum_probs=17.3
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+-.|..+.|.+|+|+|||..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHH
Confidence 446788899999999999654
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.88 E-value=1.3 Score=36.52 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
...+++.|++|||||+.+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 355
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=73.83 E-value=2.6 Score=38.73 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=22.6
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
..+++.+++|+|||..+...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 368899999999997764433333222 24666665
No 356
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=73.69 E-value=1.8 Score=35.13 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=14.6
Q ss_pred cEEEECCCCCCchhHhHH
Q 015158 78 DVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~ 95 (412)
.+++.||+||||++.+-.
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999987643
No 357
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.49 E-value=1.5 Score=36.49 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=16.7
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|.-+.+.+|.|||||+..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 335777899999999999643
No 358
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=73.43 E-value=1.3 Score=35.93 Aligned_cols=19 Identities=21% Similarity=0.169 Sum_probs=15.2
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+.+.||.|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456788999999999765
No 359
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=73.41 E-value=1.5 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.5
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
-.+|.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4688999999999664
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=73.28 E-value=1.6 Score=35.94 Aligned_cols=18 Identities=22% Similarity=0.195 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+.+.|++|||||+.+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999997763
No 361
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.23 E-value=1.9 Score=38.10 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57899999999999765
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=73.06 E-value=2.4 Score=35.45 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.5
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|+.|||||+.+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34578999999999998764
No 363
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.02 E-value=1.3 Score=35.23 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=14.2
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999997763
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.00 E-value=1.5 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
...+++.|++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998764
No 365
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.95 E-value=1.4 Score=35.26 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.3
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|++|||||+.+-
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35568899999999998763
No 366
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=72.63 E-value=1.5 Score=35.37 Aligned_cols=17 Identities=29% Similarity=0.149 Sum_probs=14.0
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+.+.|+.|||||+..-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998763
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.61 E-value=2.1 Score=40.36 Aligned_cols=52 Identities=10% Similarity=-0.036 Sum_probs=33.1
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVM 127 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 127 (412)
+..|.-++|.+++|+|||..++..+...... .+.+++++.--.. ..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCC-HHHHHHHH
Confidence 3345678999999999998776655555432 1346888765332 34455444
No 368
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=72.60 E-value=1.6 Score=37.41 Aligned_cols=54 Identities=15% Similarity=-0.012 Sum_probs=29.3
Q ss_pred hccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhh--cCccEEEECCCCCCchhHh
Q 015158 37 VYDTFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFC--KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 37 ~~~~f~~~~l~~~~~~~l~~~~~~~l~~~Q~~a~~~~~--~~~~~lv~~~tGsGKT~~~ 93 (412)
+..+|+++.-.+.....+...-.. .. ...++..+- -.+.+++.+|+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 345677776666666555431100 00 011222211 1234899999999999765
No 369
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=72.55 E-value=1.6 Score=39.38 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhHH
Q 015158 78 DVIQQAQSGTGKTATFCS 95 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~~ 95 (412)
-++|.||||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 467899999999976643
No 370
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=72.45 E-value=6.4 Score=38.45 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=48.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
+.++||.||++.-++.+++.+... +..+..++|............+..+|+|+| ..+ ...++.. ++.||
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~-e~GIDip-v~~VI 478 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DIS-EMGANFG-ASRVI 478 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGG-GTTCCCC-CSEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chh-hcceeeC-CcEEE
Confidence 457999999999999888887765 778888998543332233345678999999 333 3456666 77665
No 371
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.21 E-value=1.6 Score=35.43 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|+.|||||+.+-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999998764
No 372
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.20 E-value=1.7 Score=36.25 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 345778899999999999654
No 373
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=72.17 E-value=1.7 Score=34.98 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=14.2
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 46889999999997653
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=72.05 E-value=1.7 Score=33.73 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.+++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998763
No 375
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=72.02 E-value=1.7 Score=33.56 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.3
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677889999999999653
No 376
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.84 E-value=3.1 Score=45.76 Aligned_cols=41 Identities=17% Similarity=0.050 Sum_probs=30.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHH
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTREL 119 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L 119 (412)
++++++.+|+|+|||..+...+...... +.+++|+..-..+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEccccc
Confidence 6789999999999998877666655543 3478888765443
No 377
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=71.76 E-value=3.9 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.039 Sum_probs=21.7
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+..+++.+++|+|||..+...+...... +.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 3456778999999997654433322222 23566654
No 378
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=71.69 E-value=2 Score=37.55 Aligned_cols=24 Identities=21% Similarity=0.034 Sum_probs=18.2
Q ss_pred cCccEEEECCCCCCchhHhHHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGIL 98 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~~ 98 (412)
.+..+++.+|+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345679999999999977655444
No 379
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=71.64 E-value=1.5 Score=34.87 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.9
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.|++|||||+.+-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 357889999999998763
No 380
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=71.61 E-value=5.5 Score=41.29 Aligned_cols=76 Identities=16% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCC----eeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CCcCCCC-CCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGID-VQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~~~G~d-~~~ 346 (412)
.+.++||.+++++-+.++++.+++ .+. .+..++|+.+...+....+.+.+ .+|+|+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 346899999999999888887764 355 78999999998887777777766 88999997 2222222 557
Q ss_pred CCEEEEcc
Q 015158 347 VSLVINYD 354 (412)
Q Consensus 347 ~~~vi~~~ 354 (412)
++++|+.+
T Consensus 176 l~~lViDE 183 (1054)
T 1gku_B 176 FDFIFVDD 183 (1054)
T ss_dssp CSEEEESC
T ss_pred CCEEEEeC
Confidence 88887544
No 381
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.50 E-value=8.4 Score=35.54 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=48.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
.++||.||++.-++++++.+... +..+..+++............+..+|+|+| +.+ ..+++... ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~-~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DIS-EMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGG-GSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHH-HhCcCCCC-CEEE
Confidence 47999999999999888887764 677888888765433333345678999999 333 34566666 6665
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=71.42 E-value=2.4 Score=35.04 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.9
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999998764
No 383
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.40 E-value=1.7 Score=34.95 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.5
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
..+++.|++|||||+.+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35788999999999876
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=71.32 E-value=1.7 Score=35.25 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=16.5
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.+..+++.|+.|||||+.+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678899999999998764
No 385
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.29 E-value=1.5 Score=36.95 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=15.6
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.|++|||||+.+-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999997653
No 386
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=70.97 E-value=3.6 Score=36.63 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=14.8
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
|.-+.+.+|+|+|||+..
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 456789999999999765
No 387
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=70.94 E-value=1.9 Score=35.32 Aligned_cols=21 Identities=33% Similarity=0.349 Sum_probs=17.0
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|.-+.+.+|.|+|||+..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335778899999999999654
No 388
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=70.92 E-value=1.6 Score=35.66 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998764
No 389
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.64 E-value=2.7 Score=33.61 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=24.3
Q ss_pred CCCceEEEEeCCchh--hccCcHHHHHHHHHhCCCCceEEEEeecC
Q 015158 179 PDNIRIFVLDEADEM--LSRGFKDQIYDIFQLLPPKIQVGVFSATM 222 (412)
Q Consensus 179 ~~~~~~iiiDE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 222 (412)
..+.+++|+||+..+ .+..+...+..++.. ...+++-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 456789999997554 333355555555553 33355546664
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=70.57 E-value=1.9 Score=34.46 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.1
Q ss_pred EEEECCCCCCchhHhHH
Q 015158 79 VIQQAQSGTGKTATFCS 95 (412)
Q Consensus 79 ~lv~~~tGsGKT~~~~~ 95 (412)
+++.|+.|||||+.+-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999987643
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.49 E-value=1.8 Score=35.43 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.6
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
+..+++.+++|||||+.+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999998763
No 392
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.47 E-value=3.1 Score=38.68 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.3
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999998764
No 393
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.44 E-value=1.9 Score=34.33 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=14.1
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|+.|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998763
No 394
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=70.34 E-value=2 Score=35.91 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.4
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+..+++.||.|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999765
No 395
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.29 E-value=1.7 Score=35.04 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=13.8
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
.+.+.|++|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999765
No 396
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=70.14 E-value=2.3 Score=37.90 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=16.8
Q ss_pred hhhhcCcc--EEEECCCCCCchhHhH
Q 015158 71 VPFCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 71 ~~~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
..++.|.+ ++.-|.||||||.++.
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 33445655 4557899999998863
No 397
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=69.88 E-value=3.5 Score=37.42 Aligned_cols=41 Identities=17% Similarity=-0.018 Sum_probs=25.4
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhcc---CCCceeEEEEcCC
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDY---GLVECQALVLAPT 116 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~---~~~~~~~lil~P~ 116 (412)
|.-+.|.+|+|+|||..+...+...... +..+.+++++.-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3567899999999997765433333221 1123467777654
No 398
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=69.78 E-value=3.7 Score=37.68 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=22.7
Q ss_pred ccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 77 LDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+.+++.++.|+|||++..-.+...... .+.+++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEe
Confidence 356778999999998765444433322 134666655
No 399
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=69.73 E-value=13 Score=36.02 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=48.8
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHHhcCCCcEEEeChHHHHHHHHcCCCCCCCceEEE
Q 015158 108 CQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRIFV 186 (412)
Q Consensus 108 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ii 186 (412)
.++||.|+++.-++.+++.+.+. +..+..+++............+..+|+|+| +.+ ...++.. ++.||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~~l~~F~~g~~~VLVaT-----dv~-~rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DIS-EMGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHHHTTHHHHSCCSEEEEC-----GGG-GTTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHHHHHhhcCCCcEEEEEC-----cHH-HcCcccC-ceEEE
Confidence 47999999999999999888875 677888888644333334445778999999 333 3455554 66654
No 400
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=69.60 E-value=2 Score=36.74 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.5
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999654
No 401
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=69.56 E-value=4.9 Score=31.37 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=13.6
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
-+.+.++.|||||....
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999997653
No 402
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=69.52 E-value=2 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335778899999999999654
No 403
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=69.42 E-value=2.1 Score=35.99 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335778899999999999654
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=69.37 E-value=2.2 Score=35.88 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.0
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+.|.+|+|||||+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999775
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=69.36 E-value=2 Score=36.38 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+++.|++|||||..+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 457899999999998763
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.26 E-value=2 Score=39.42 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.8
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
.+++++.+|+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999765
No 407
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=69.20 E-value=2.8 Score=36.73 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=16.7
Q ss_pred hhhcCcc--EEEECCCCCCchhHhH
Q 015158 72 PFCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
.++.|.+ ++.-|.||||||.++.
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCeEEEEEECCCCCCCceEec
Confidence 3445655 4567999999998864
No 408
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=69.16 E-value=2.1 Score=36.20 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.1
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 335778899999999999654
No 409
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=68.98 E-value=1.9 Score=36.08 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335777899999999999654
No 410
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.94 E-value=2.1 Score=35.25 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.|++|||||+.+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46889999999998764
No 411
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.78 E-value=2.1 Score=39.89 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=15.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+.+++.+|+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999765
No 412
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=68.61 E-value=2 Score=36.47 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.4
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35777889999999999654
No 413
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.50 E-value=14 Score=32.55 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=52.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCC
Q 015158 106 VECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDN 181 (412)
Q Consensus 106 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~ 181 (412)
.+.++||.|+++.-++...+.+.+. +..+..++|+.+....... ..+..+|+|+|. . +. .+++..+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~----~~-~Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-V----MS-RGIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-T----HH-HHCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-h----hh-cCCCccc
Confidence 3457999999999999888888775 6778888888765444322 245678999992 2 21 2455667
Q ss_pred ceEEEEeCC
Q 015158 182 IRIFVLDEA 190 (412)
Q Consensus 182 ~~~iiiDE~ 190 (412)
+++||.-+.
T Consensus 307 ~~~Vi~~~~ 315 (367)
T 1hv8_A 307 LNCVINYHL 315 (367)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEecC
Confidence 788876443
No 414
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=68.47 E-value=6.9 Score=34.19 Aligned_cols=16 Identities=19% Similarity=0.096 Sum_probs=13.4
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
-+.+.||+|||||+.+
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999765
No 415
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=68.19 E-value=2.8 Score=32.91 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.1
Q ss_pred cCccEEEECCCCCCchhHhHHHH
Q 015158 75 KGLDVIQQAQSGTGKTATFCSGI 97 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~~~~ 97 (412)
.|+-+++.++.|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46778999999999997765433
No 416
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=68.15 E-value=29 Score=33.77 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=56.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHHH----hcCCCcEEEeChHHHHHHHHcCCCCCCCc
Q 015158 107 ECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRI----LSSGVHVVVGTPGRVFDMLRRQSLRPDNI 182 (412)
Q Consensus 107 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iii~T~~~l~~~~~~~~~~~~~~ 182 (412)
+.++||.|+++..++.+.+.+... ++.+..++++......... ..+..+|+|+| +.+ ..+++...+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT-----~~l-~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLL-REGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCC-CTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEcc-----Chh-hcCccCCCC
Confidence 358999999999999888888775 6778888887654443322 23568899998 222 456777888
Q ss_pred eEEEEeCCch
Q 015158 183 RIFVLDEADE 192 (412)
Q Consensus 183 ~~iiiDE~h~ 192 (412)
++||+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9888888764
No 417
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.98 E-value=2.3 Score=34.07 Aligned_cols=17 Identities=24% Similarity=0.229 Sum_probs=14.3
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+.+.|++|||||+++-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999998763
No 418
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=67.95 E-value=2.1 Score=38.30 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.7
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
-.+|.||+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999765
No 419
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=67.84 E-value=2.3 Score=35.93 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=16.4
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|.|+|||+..
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999654
No 420
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.74 E-value=1.9 Score=35.53 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.1
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999653
No 421
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=67.69 E-value=2.3 Score=35.44 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.4
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999653
No 422
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=67.61 E-value=3.2 Score=36.89 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred hhhcCcc--EEEECCCCCCchhHhH
Q 015158 72 PFCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
.++.|.+ ++.-|.||||||.++.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhCCCcceEEEECCCCCCcceEee
Confidence 3455655 4557999999998763
No 423
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=67.54 E-value=3.7 Score=36.42 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=19.3
Q ss_pred hhhhhhcCccE--EEECCCCCCchhHhH
Q 015158 69 GIVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 69 a~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.+..++.|.++ +.-|.||||||.++.
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 45566677665 456899999998864
No 424
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=67.50 E-value=34 Score=31.62 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=34.1
Q ss_pred hhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcC-CHHHHHHHHHHHHH
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAP-TRELAQQIEKVMRA 129 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P-~~~L~~q~~~~~~~ 129 (412)
+..+-+|+...|.++.|+|||..+...+.+..... ....++..+- +..-+.+..+++..
T Consensus 147 l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~-~~v~V~~~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 147 LAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAH-GGYSVFAGVGERTREGNDLYHEMIE 206 (482)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTC-SSEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccCCeeeeecCCCCChHHHHHHHHHhhHhhC-CCEEEEEECCCcchHHHHHHHHhhh
Confidence 33345789999999999999987655554432221 2223333343 22334455555544
No 425
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=67.43 E-value=17 Score=32.40 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-CC-----cCCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL-----ARGIDVQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-~~-----~~G~d~~~ 346 (412)
...++||.++++.-+.++++.+.+ .+..+..++|+.+..+....+. ..+|+|+|+ .+ ...++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 346899999999998888777754 4678889999887766544443 467999985 11 22455667
Q ss_pred CCEEEEcc
Q 015158 347 VSLVINYD 354 (412)
Q Consensus 347 ~~~vi~~~ 354 (412)
++.||+.+
T Consensus 163 ~~~vIiDE 170 (394)
T 1fuu_A 163 IKMFILDE 170 (394)
T ss_dssp CCEEEEET
T ss_pred CcEEEEEC
Confidence 78887544
No 426
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=67.40 E-value=2.4 Score=35.91 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.3
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999653
No 427
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=67.31 E-value=2.8 Score=32.95 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=13.6
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
-.+|.+|+|+|||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5688999999999664
No 428
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=67.19 E-value=6.2 Score=42.03 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 152 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (412)
+..|+.+.++||+|||||...- .+........-=|......+.+--.+.+++......-......+. -..+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~-----ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~T----I~eN 511 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIIS-----LLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCT----IEEN 511 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHH-----HHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEE----HHHH
T ss_pred ecCCcEEEEEecCCCcHHHHHH-----HhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCc----hhHH
Q ss_pred HhcCCCcEEEeChHHHHHHHHcCCCCC-----------------------------------CCceEEEEeCCchhhccC
Q 015158 153 ILSSGVHVVVGTPGRVFDMLRRQSLRP-----------------------------------DNIRIFVLDEADEMLSRG 197 (412)
Q Consensus 153 ~~~~~~~iii~T~~~l~~~~~~~~~~~-----------------------------------~~~~~iiiDE~h~~~~~~ 197 (412)
+..+..+ .|.+.+.+......+.. ++-+++|+||+=..+|..
T Consensus 512 I~~g~~~---~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~ 588 (1321)
T 4f4c_A 512 ISLGKEG---ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588 (1321)
T ss_dssp HHTTCTT---CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTT
T ss_pred Hhhhccc---chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHH
Q ss_pred cHHHHHHHHHhCCCCceEEEEe
Q 015158 198 FKDQIYDIFQLLPPKIQVGVFS 219 (412)
Q Consensus 198 ~~~~~~~i~~~~~~~~~~i~~S 219 (412)
....+.+.+..+.++..+|..|
T Consensus 589 te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 589 SEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp THHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEEc
No 429
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=67.10 E-value=3.3 Score=36.37 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=18.4
Q ss_pred hhhhhhcCccE--EEECCCCCCchhHhH
Q 015158 69 GIVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 69 a~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.+..++.|.++ +.-+.||||||.++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 34455667654 557999999998763
No 430
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=67.07 E-value=4.7 Score=28.06 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=31.4
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 312 (412)
+..++++||.+-..+..++..|++.|+++..+.|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 346899999998889999999999999888888874
No 431
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=67.05 E-value=2.4 Score=35.40 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=15.3
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+.-+.+.||.|||||+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556778999999999765
No 432
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.00 E-value=3.9 Score=36.24 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=18.9
Q ss_pred hhhhhhcCccE--EEECCCCCCchhHhH
Q 015158 69 GIVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 69 a~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.+..++.|.++ +.-|.||||||.++.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 45556677654 557899999998864
No 433
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=66.94 E-value=4.5 Score=28.69 Aligned_cols=36 Identities=3% Similarity=0.048 Sum_probs=31.6
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 312 (412)
...++++||.+-..+..++..|++.|+++..+.|++
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~ 89 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGI 89 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcH
Confidence 346899999998889999999999999999998875
No 434
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.91 E-value=2.5 Score=35.66 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.3
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35677889999999999654
No 435
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=66.80 E-value=2.4 Score=35.65 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=16.8
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 335777889999999999654
No 436
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=66.78 E-value=3.9 Score=39.51 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=18.6
Q ss_pred hhhcCccEEEECCCCCCchhHh
Q 015158 72 PFCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 72 ~~~~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+..+++.+|+|+|||..+
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHH
Confidence 3556789999999999999765
No 437
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=66.73 E-value=2.5 Score=35.90 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.5
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|.|+|||+.+
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999654
No 438
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=66.70 E-value=2.6 Score=40.14 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=16.4
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.+..+++.+|+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 439
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=66.67 E-value=4.8 Score=33.96 Aligned_cols=51 Identities=10% Similarity=0.090 Sum_probs=31.8
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIEKVMRAL 130 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 130 (412)
|..+++.+++|+|||..++..+.+.+..+ .++++++-. +-..+..+.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~G---e~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSD---NLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTT---CEEEEEECS-SCHHHHHHHHHHT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCC---CcEEEEEEe-CCHHHHHHHHHHc
Confidence 56778888888888855555555555543 367776643 3344455555555
No 440
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=66.64 E-value=24 Score=32.92 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=37.7
Q ss_pred hhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhcc-----CCCce-eEEEEcC-CHHHHHHHHHHHHH
Q 015158 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY-----GLVEC-QALVLAP-TRELAQQIEKVMRA 129 (412)
Q Consensus 68 ~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~-----~~~~~-~~lil~P-~~~L~~q~~~~~~~ 129 (412)
.++..+-+|+...|.++.|+|||..++-.+.+.... ...+. .+++.+- ...-+.+..+.+..
T Consensus 154 D~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 154 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 344445579999999999999998876666666542 11222 2333333 33445556666655
No 441
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=66.62 E-value=3.4 Score=36.73 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=21.3
Q ss_pred ChHHHHhhhhh--------hhcCcc--EEEECCCCCCchhHhH
Q 015158 62 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 62 l~~~Q~~a~~~--------~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
+..-|.+.+.. ++.|.+ ++.-|.||||||.++.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 33446555544 445655 4557899999998863
No 442
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=66.48 E-value=3.1 Score=36.79 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=15.5
Q ss_pred hhcCcc--EEEECCCCCCchhHh
Q 015158 73 FCKGLD--VIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~--~lv~~~tGsGKT~~~ 93 (412)
++.|.+ ++.-|.||||||.++
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhCCCceEEEEecCCCCCCCeEE
Confidence 345655 455799999999876
No 443
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=66.38 E-value=5 Score=37.36 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=21.3
Q ss_pred CccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEE
Q 015158 76 GLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVL 113 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil 113 (412)
|.-+.+.|++|+|||+..-. +...+.. .++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~-LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK-LARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH-HHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHH-HHHHhhh--cCCeEEEe
Confidence 34678899999999976432 2222221 23467776
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=66.31 E-value=2.6 Score=35.89 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=20.5
Q ss_pred CceEEEEeCCchhhccCcHHHHHHHHHhCC
Q 015158 181 NIRIFVLDEADEMLSRGFKDQIYDIFQLLP 210 (412)
Q Consensus 181 ~~~~iiiDE~h~~~~~~~~~~~~~i~~~~~ 210 (412)
+-+++++||.-.-++......+..++..+.
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 203 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESP 203 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCT
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 456788888777666666666666666654
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=66.29 E-value=2.6 Score=35.71 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.3
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|.-+.+.+|.|+|||+..
T Consensus 48 ~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHH
Confidence 35677889999999999654
No 446
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=66.26 E-value=1.8 Score=37.63 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.8
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|+|+|||+..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35788899999999999754
No 447
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=66.19 E-value=2.6 Score=35.42 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=16.9
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 335777889999999999654
No 448
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=66.06 E-value=2.7 Score=35.72 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=16.7
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|..+.+.+|.|+|||+..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 335777889999999999654
No 449
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=65.95 E-value=2.6 Score=35.48 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=16.4
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|.|+|||+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777889999999999653
No 450
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=65.89 E-value=4.4 Score=28.35 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=31.2
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 312 (412)
+..++++||.+-..+..++..|.+.|+++..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 346899999998889999999999999988888874
No 451
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=65.81 E-value=3.7 Score=36.38 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=15.6
Q ss_pred hhcCcc--EEEECCCCCCchhHh
Q 015158 73 FCKGLD--VIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~--~lv~~~tGsGKT~~~ 93 (412)
++.|.+ ++.-|.||||||.++
T Consensus 85 ~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 85 VLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceeEEeecCCCCCCCEEe
Confidence 445655 455789999999876
No 452
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=65.70 E-value=3.6 Score=36.75 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=16.4
Q ss_pred hhhcCccE--EEECCCCCCchhHhH
Q 015158 72 PFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.++.|.++ +.-|.||||||.++.
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHhcCCeeEEEEeCCCCCCCceEee
Confidence 34566554 557899999998763
No 453
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.67 E-value=3.5 Score=37.41 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=18.8
Q ss_pred hhhhhhcCccE--EEECCCCCCchhHhH
Q 015158 69 GIVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 69 a~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.+..++.|.++ +.-|.||||||.++.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 44556677664 557899999998863
No 454
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=65.57 E-value=3.8 Score=36.27 Aligned_cols=21 Identities=43% Similarity=0.757 Sum_probs=15.6
Q ss_pred hhcCcc--EEEECCCCCCchhHh
Q 015158 73 FCKGLD--VIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~--~lv~~~tGsGKT~~~ 93 (412)
++.|.+ ++.-+.||||||.++
T Consensus 79 ~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 79 FFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCeeEEEecccCCCceEee
Confidence 445655 455789999999876
No 455
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=65.32 E-value=3.8 Score=36.54 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=16.1
Q ss_pred hhcCcc--EEEECCCCCCchhHhH
Q 015158 73 FCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 73 ~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
++.|.+ ++.-|.||||||.++.
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HhCCCceEEEeecCCCCCCceEEe
Confidence 445655 4557999999998863
No 456
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=65.18 E-value=3.3 Score=36.71 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=16.4
Q ss_pred hhhcCcc--EEEECCCCCCchhHhH
Q 015158 72 PFCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
.++.|.+ ++.-|.||||||.++.
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 72 SAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHcCCccceeeecCCCCCCCeEEe
Confidence 3445655 4557899999998763
No 457
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.16 E-value=3.3 Score=37.03 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=16.4
Q ss_pred hhhcCccE--EEECCCCCCchhHhH
Q 015158 72 PFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 72 ~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.++.|.++ +.-|.||||||.++.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHhCCCeeeEEeecCCCCCCCEeEe
Confidence 34566554 557899999998763
No 458
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.11 E-value=2.8 Score=35.94 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=16.4
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|.|+|||+..
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35777889999999999654
No 459
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=65.05 E-value=3.3 Score=36.81 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=17.7
Q ss_pred hhhhhcCccE--EEECCCCCCchhHhH
Q 015158 70 IVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 70 ~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
+..++.|.++ +.-|.||||||.++.
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 3445567654 556899999998863
No 460
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.92 E-value=2.8 Score=34.21 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.8
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+.+.++.|||||+.+-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998653
No 461
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=64.73 E-value=3.4 Score=36.76 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=17.3
Q ss_pred hhhhhcCccE--EEECCCCCCchhHhH
Q 015158 70 IVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 70 ~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
+..++.|.++ +.-+.||||||.++.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEECCCCCCCceEec
Confidence 3344567654 556899999998863
No 462
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=64.43 E-value=5.1 Score=43.38 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=0.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEc
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLA 114 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 114 (412)
+-.+..+++.+++|+|||..++..+...+..+. +++|+.
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~ 69 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFID 69 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEE
No 463
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=64.40 E-value=52 Score=30.58 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=49.4
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhhcccCcEEEEEEcCcchHHHHH----HhcCCCcEEEeChHHHHHHHHcCCCCCCCceE
Q 015158 109 QALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR----ILSSGVHVVVGTPGRVFDMLRRQSLRPDNIRI 184 (412)
Q Consensus 109 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iii~T~~~l~~~~~~~~~~~~~~~~ 184 (412)
..++++.+..-+..+.+.+.+. +..+..++|+........ ...+..+|+|+|+..+.. +++..++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 4555555566565566555553 347888888876544322 234667899999777653 567788999
Q ss_pred EEEeCCc
Q 015158 185 FVLDEAD 191 (412)
Q Consensus 185 iiiDE~h 191 (412)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9988877
No 464
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=64.38 E-value=3.8 Score=36.81 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=21.7
Q ss_pred ChHHHHhhhhh--------hhcCcc--EEEECCCCCCchhHhH
Q 015158 62 PSAIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 62 l~~~Q~~a~~~--------~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
+..-|.+++.. ++.|.+ ++.-|.||||||.++.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 34456665553 445655 4557999999998763
No 465
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=64.27 E-value=28 Score=32.38 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=36.2
Q ss_pred hhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCcee-EEEEcC-CHHHHHHHHHHHHH
Q 015158 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ-ALVLAP-TRELAQQIEKVMRA 129 (412)
Q Consensus 68 ~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~-~lil~P-~~~L~~q~~~~~~~ 129 (412)
.++..+-+|+...|.++.|+|||..++-.+.+... .+.. +++.+- ...-+.+..+.+..
T Consensus 154 D~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~---~dv~~V~~~iGeR~~Ev~~~~~~~~~ 214 (502)
T 2qe7_A 154 DSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG---QDVICIYVAIGQKQSTVAGVVETLRQ 214 (502)
T ss_dssp HHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS---CSEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccCCEEEEECCCCCCchHHHHHHHHHhhc---CCcEEEEEECCCcchHHHHHHHHHhh
Confidence 34444557999999999999999886656665542 2222 333333 33445556665555
No 466
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=64.24 E-value=3.4 Score=36.80 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=17.0
Q ss_pred hhhhcCccE--EEECCCCCCchhHhH
Q 015158 71 VPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 71 ~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
..++.|.++ +.-|.||||||.++.
T Consensus 82 ~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 82 DEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHhCCCceEEEEeCCCCCCCceEEe
Confidence 344567654 557899999998764
No 467
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=63.97 E-value=6.3 Score=40.45 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=36.9
Q ss_pred ccccccCC-C-CHHHHHHHHHCCCCC--ChHH--HHhhhhhhh---cCccEEEECCCCCCchhHhH
Q 015158 38 YDTFDAMG-L-QENLLRGIYAYGFEK--PSAI--QQRGIVPFC---KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 38 ~~~f~~~~-l-~~~~~~~l~~~~~~~--l~~~--Q~~a~~~~~---~~~~~lv~~~tGsGKT~~~~ 94 (412)
..||..++ + +++..+........+ |+.+ -..|+..+. .++.++|.|+.|+|||.+.=
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 34666664 3 677777776544333 3333 345555544 35889999999999997753
No 468
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=63.82 E-value=3.3 Score=33.12 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.7
Q ss_pred ccEEEECCCCCCchhHhH
Q 015158 77 LDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~~ 94 (412)
..+.|.+++|||||..+-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357889999999998763
No 469
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=63.72 E-value=5.2 Score=28.14 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=30.5
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 312 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 312 (412)
+..++++||.+-..+...+..|.+.|++...+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 346899999988888899999999999888887764
No 470
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=63.72 E-value=3.1 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=14.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
.-.+|.+|+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 35688999999999664
No 471
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=63.69 E-value=27 Score=32.56 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=35.9
Q ss_pred hhhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCcee-EEEEcC-CHHHHHHHHHHHHH
Q 015158 68 RGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ-ALVLAP-TRELAQQIEKVMRA 129 (412)
Q Consensus 68 ~a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~-~lil~P-~~~L~~q~~~~~~~ 129 (412)
.++..+-+|+...|.++.|+|||..++-.+.+... .... +++.+- ...-+.+..+.+..
T Consensus 167 D~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~---~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 167 DSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG---QGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp HHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT---TTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc---CCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 34444557999999999999999876655655542 2222 333333 33445555555554
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=63.59 E-value=5.5 Score=43.87 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=34.0
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCHHHHHHHH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTRELAQQIE 124 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 124 (412)
+..+.++++.+|+|+|||..+...+......+ .+++|+.-. .+.++..
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~G---e~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTT-SCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEcc-ccHHHHH
Confidence 44568899999999999988877777766554 478887643 3333343
No 473
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=63.52 E-value=34 Score=31.83 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=35.2
Q ss_pred hhhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCcee-EEEEcC-CHHHHHHHHHHHHH
Q 015158 69 GIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQ-ALVLAP-TRELAQQIEKVMRA 129 (412)
Q Consensus 69 a~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~-~lil~P-~~~L~~q~~~~~~~ 129 (412)
++..+-+|+...|.++.|+|||..++-.+.+... .+.. +++.+- ...-+.+..+.+..
T Consensus 155 ~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~---~dv~~V~~~IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 155 SMIPIGRGQRELIIGDRQTGKTALAIDAIINQRD---SGIKCIYVAIGQKASTISNVVRKLEE 214 (513)
T ss_dssp HHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSS---SSCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cccccccCCEEEeecCCCCCcchHHHHHHHhhcc---CCceEEEEEecCChHHHHHHHHHHhh
Confidence 3344557899999999999999886555555422 2222 233333 33445556666555
No 474
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.42 E-value=2.8 Score=33.74 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=14.8
Q ss_pred CccEEEECCCCCCchhHh
Q 015158 76 GLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~ 93 (412)
+.-+.+.|+.|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999765
No 475
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=63.38 E-value=3.7 Score=36.76 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=16.0
Q ss_pred hhcCcc--EEEECCCCCCchhHhH
Q 015158 73 FCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 73 ~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
++.|.+ ++.-+.||||||.++.
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HhCCceEEEEeecCCCCCcceecc
Confidence 445655 4557899999998763
No 476
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=63.31 E-value=4.3 Score=36.47 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=16.6
Q ss_pred hhhcCcc--EEEECCCCCCchhHhHH
Q 015158 72 PFCKGLD--VIQQAQSGTGKTATFCS 95 (412)
Q Consensus 72 ~~~~~~~--~lv~~~tGsGKT~~~~~ 95 (412)
.++.|.+ ++.-|.||||||.++.-
T Consensus 129 ~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 129 TIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHhcCCceEEEEecCCCCCCCeEecc
Confidence 3445655 45578999999988643
No 477
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.06 E-value=3.2 Score=36.21 Aligned_cols=21 Identities=14% Similarity=-0.032 Sum_probs=16.5
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..|.-+.|.||.|||||+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 344566788999999999765
No 478
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.93 E-value=4 Score=37.06 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=18.4
Q ss_pred hhhhhhcCccE--EEECCCCCCchhHhH
Q 015158 69 GIVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 69 a~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
.+..++.|.++ +.-|.||||||.++.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 34455567654 557899999998863
No 479
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=62.92 E-value=3.4 Score=36.95 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=17.7
Q ss_pred hhhhhcCccE--EEECCCCCCchhHhH
Q 015158 70 IVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 70 ~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
+..++.|.++ +.-|.||||||.++.
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4445567654 456899999998763
No 480
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.88 E-value=5.9 Score=37.44 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=26.9
Q ss_pred hhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCCH
Q 015158 73 FCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPTR 117 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 117 (412)
+..|..++|.+++|+|||..+...+...... +.+++++++..
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~~vi~~~~ee 319 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACAN---KERAILFAYEE 319 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TCCEEEEESSS
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CCCEEEEEEeC
Confidence 4456788999999999997654433322222 33577777643
No 481
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=62.86 E-value=2.7 Score=37.75 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
.-.++.|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45688999999999664
No 482
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=62.76 E-value=4.4 Score=37.24 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=20.7
Q ss_pred HHHHhhhhh--------hhcCcc--EEEECCCCCCchhHhH
Q 015158 64 AIQQRGIVP--------FCKGLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 64 ~~Q~~a~~~--------~~~~~~--~lv~~~tGsGKT~~~~ 94 (412)
.-|.+++.. ++.|.+ ++.-|.||||||.++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 346655544 346655 4557899999998863
No 483
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=62.63 E-value=57 Score=25.93 Aligned_cols=113 Identities=8% Similarity=0.186 Sum_probs=72.5
Q ss_pred CcEEEEEcchhHHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC----CCcCCCCCCCCCEEEEcc
Q 015158 279 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD----LLARGIDVQQVSLVINYD 354 (412)
Q Consensus 279 ~k~lif~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~----~~~~G~d~~~~~~vi~~~ 354 (412)
.+++++++..+-.+.+.+...+.+.++..+.+.+.. --...+.. +...+|+|+-. .+..-+++| ..+
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 467788888777776666666656677777776533 33344445 56778999854 455556665 244
Q ss_pred CCCChhhHHHhhhhcccCCCCceEEEEeccCcHHHHHHHHHHhccccc
Q 015158 355 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 402 (412)
Q Consensus 355 ~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (412)
.+.|..++++.+-++.+.+. ..++ +-.+.-...+..+.+.+...+.
T Consensus 76 I~~s~~Dil~al~~a~~~~~-kIav-vg~~~~~~~~~~~~~ll~~~i~ 121 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFGN-ELAL-IAYKHSIVDKHEIEAMLGVKIK 121 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGCS-EEEE-EEESSCSSCHHHHHHHHTCEEE
T ss_pred EcCCHhHHHHHHHHHHhhCC-cEEE-EeCcchhhHHHHHHHHhCCceE
Confidence 57888999999999977653 3333 3334444445667777776544
No 484
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.60 E-value=23 Score=31.74 Aligned_cols=76 Identities=12% Similarity=0.226 Sum_probs=52.1
Q ss_pred CCCcEEEEEcchhHHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CC-cCCCCCCC
Q 015158 277 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL-ARGIDVQQ 346 (412)
Q Consensus 277 ~~~k~lif~~~~~~~~~~~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~-~~G~d~~~ 346 (412)
...++||.++++.-+.++++.+++. +..+....|+..... ..+....+..+|+|+|+ .+ ...++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999988888877653 567777777765433 34455557889999995 11 22345667
Q ss_pred CCEEEEccC
Q 015158 347 VSLVINYDL 355 (412)
Q Consensus 347 ~~~vi~~~~ 355 (412)
+++||+-+.
T Consensus 184 ~~~vViDEa 192 (414)
T 3eiq_A 184 IKMFVLDEA 192 (414)
T ss_dssp CCEEEECSH
T ss_pred CcEEEEECH
Confidence 788875543
No 485
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=62.38 E-value=4.4 Score=36.30 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=17.7
Q ss_pred hhhhhcCccE--EEECCCCCCchhHhH
Q 015158 70 IVPFCKGLDV--IQQAQSGTGKTATFC 94 (412)
Q Consensus 70 ~~~~~~~~~~--lv~~~tGsGKT~~~~ 94 (412)
+..++.|.++ +.-+.||||||.++.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 4445567654 556899999998763
No 486
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.04 E-value=3 Score=47.38 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=17.8
Q ss_pred hhcCccEEEECCCCCCchhHh
Q 015158 73 FCKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 73 ~~~~~~~lv~~~tGsGKT~~~ 93 (412)
+..++.++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 345789999999999999765
No 487
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.99 E-value=3.6 Score=33.97 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=15.4
Q ss_pred cCccEEEECCCCCCchhHh
Q 015158 75 KGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~ 93 (412)
.|.-+.+.|+.|+|||+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4566789999999999754
No 488
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.78 E-value=3.4 Score=38.71 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.8
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
+.+++.+|+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999765
No 489
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=61.63 E-value=3.2 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.5
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..|..+.+.+|.|+|||+..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35777889999999999654
No 490
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=61.59 E-value=3.5 Score=34.60 Aligned_cols=17 Identities=12% Similarity=0.167 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+.|.|++|||||+.+-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999997763
No 491
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=61.57 E-value=3.4 Score=35.58 Aligned_cols=17 Identities=29% Similarity=0.364 Sum_probs=14.0
Q ss_pred ccEEEECCCCCCchhHh
Q 015158 77 LDVIQQAQSGTGKTATF 93 (412)
Q Consensus 77 ~~~lv~~~tGsGKT~~~ 93 (412)
.-+.|.|++|||||+.+
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45678999999999765
No 492
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.56 E-value=4.5 Score=36.02 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=15.1
Q ss_pred Ccc--EEEECCCCCCchhHhH
Q 015158 76 GLD--VIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~--~lv~~~tGsGKT~~~~ 94 (412)
|.+ ++.-|.||||||.++.
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 655 4778999999998764
No 493
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=61.48 E-value=19 Score=33.37 Aligned_cols=59 Identities=14% Similarity=0.088 Sum_probs=34.9
Q ss_pred hhhhhcCccEEEECCCCCCchhHhHHHHHHhhccCCCceeEEEEcCC-HHHHHHHHHHHHH
Q 015158 70 IVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVECQALVLAPT-RELAQQIEKVMRA 129 (412)
Q Consensus 70 ~~~~~~~~~~lv~~~tGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~-~~L~~q~~~~~~~ 129 (412)
+..+.+|+...|.++.|.|||......+.+..... ....++..+-- ..-+.+..+++..
T Consensus 159 l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~-~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 159 LAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH-GGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp HSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTC-SSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred ecccccCCeEEeecCCCCCchHHHHHHHHHHHhhC-CCEEEEEEcccCcHHHHHHHHhhhc
Confidence 33345689999999999999987655555433221 22234444432 2345556666655
No 494
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=61.33 E-value=4.7 Score=33.28 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.6
Q ss_pred cCccEEEECCCCCCchhHhH
Q 015158 75 KGLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 75 ~~~~~lv~~~tGsGKT~~~~ 94 (412)
.|.-+++.|+.|+|||+..-
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 46678899999999997753
No 495
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=61.30 E-value=2.1 Score=33.54 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.7
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+.|.+++|||||+...
T Consensus 4 ~v~IvG~SGsGKSTL~~ 20 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT 20 (171)
T ss_dssp EEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999997653
No 496
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=61.23 E-value=3.5 Score=35.62 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=14.4
Q ss_pred cEEEECCCCCCchhHhH
Q 015158 78 DVIQQAQSGTGKTATFC 94 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~~ 94 (412)
.+++.+++|||||+.+-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998763
No 497
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.21 E-value=4.5 Score=32.94 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHhcC--------CCeeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----CCc-CCCC
Q 015158 278 ITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGID 343 (412)
Q Consensus 278 ~~k~lif~~~~~~~~~~~~~L~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~t~-----~~~-~G~d 343 (412)
..++||.+++++-+.++++.+++. +..+..++|+.+..... +.+ ....+|+|+|+ .+. ..++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999988888777543 56778888876433211 111 23578999996 112 2356
Q ss_pred CCCCCEEEEcc
Q 015158 344 VQQVSLVINYD 354 (412)
Q Consensus 344 ~~~~~~vi~~~ 354 (412)
+..++.+|+.+
T Consensus 148 ~~~~~~lViDE 158 (219)
T 1q0u_A 148 VHTAHILVVDE 158 (219)
T ss_dssp GGGCCEEEECS
T ss_pred cCcceEEEEcC
Confidence 67788887544
No 498
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=60.90 E-value=5 Score=36.05 Aligned_cols=20 Identities=20% Similarity=0.044 Sum_probs=16.5
Q ss_pred hcCccEEEECCCCCCchhHh
Q 015158 74 CKGLDVIQQAQSGTGKTATF 93 (412)
Q Consensus 74 ~~~~~~lv~~~tGsGKT~~~ 93 (412)
..++.+++.||+|+|||+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34678899999999999764
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=60.69 E-value=6 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.5
Q ss_pred cEEEECCCCCCchhHh
Q 015158 78 DVIQQAQSGTGKTATF 93 (412)
Q Consensus 78 ~~lv~~~tGsGKT~~~ 93 (412)
-++|.++.|+|||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4688999999999764
No 500
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=60.58 E-value=4.8 Score=40.05 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.3
Q ss_pred CccEEEECCCCCCchhHhH
Q 015158 76 GLDVIQQAQSGTGKTATFC 94 (412)
Q Consensus 76 ~~~~lv~~~tGsGKT~~~~ 94 (412)
..++++.||+|+|||..+-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999998764
Done!