Query 015159
Match_columns 412
No_of_seqs 288 out of 2092
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 07:43:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 2E-06 6.8E-11 68.7 11.0 72 175-246 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.4 1.2E-06 4E-11 72.6 8.4 70 176-245 34-104 (137)
3 2i68_A Protein EMRE; transmemb 98.4 7.6E-07 2.6E-11 73.8 7.2 63 337-399 42-105 (137)
4 3b5d_A Multidrug transporter E 97.9 4.9E-05 1.7E-09 60.5 9.0 60 339-398 44-104 (110)
5 3l1l_A Arginine/agmatine antip 53.4 30 0.001 33.2 7.5 25 380-404 409-433 (445)
6 2rdd_B UPF0092 membrane protei 27.8 78 0.0027 19.0 3.7 8 389-396 12-19 (37)
7 1pw4_A Glycerol-3-phosphate tr 14.3 6.9E+02 0.024 22.7 27.3 22 377-398 412-433 (451)
8 4dve_A Biotin transporter BIOY 10.9 7.1E+02 0.024 21.0 8.2 71 170-245 15-88 (198)
9 2h3o_A MERF; membrane protein, 10.7 79 0.0027 21.5 0.7 15 387-401 41-55 (61)
10 2ks1_B Epidermal growth factor 10.6 81 0.0028 19.9 0.7 23 382-404 21-43 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=2e-06 Score=68.69 Aligned_cols=72 Identities=15% Similarity=0.199 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcCc
Q 015159 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTE 246 (412)
Q Consensus 175 ~~~~~l~~~~~~~~~~~al~~~s~s~~~ii-~~~~Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~~ 246 (412)
.+...+++.++..+...++++.|.+.+..+ ..+.|+++++++++++||+++..+++|++++++|++++...+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344455677888999999999999999888 899999999999999999999999999999999999887644
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.36 E-value=1.2e-06 Score=72.65 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccchHHHHHH-HhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcC
Q 015159 176 IPVAVCHALGHVTSNVSFAAVAVSFTHTI-KALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (412)
Q Consensus 176 ~~~~l~~~~~~~~~~~al~~~s~s~~~ii-~~~~Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~ 245 (412)
+...+++.++.++.+.++++++++.+..+ .++.|++++++++++++|++++.+++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455677889999999999999998888 89999999999999999999999999999999999988654
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.36 E-value=7.6e-07 Score=73.82 Aligned_cols=63 Identities=19% Similarity=0.139 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHHH
Q 015159 337 LYNQLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYIK 399 (412)
Q Consensus 337 ~~~~~~~~~l~~~sa~~~sv~-~~l~~v~~ii~s~~~fge~~t~~~~iG~~lvl~Gv~l~~~~~ 399 (412)
+..+++.+++++.++.....+ ..+.|++++++++++|||++|+.+++|++++++|+++.+..+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334556688899999887776 899999999999999999999999999999999999998654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.91 E-value=4.9e-05 Score=60.50 Aligned_cols=60 Identities=20% Similarity=0.162 Sum_probs=52.2
Q ss_pred HHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHHHH
Q 015159 339 NQLATNTLERVAPLTHAVG-NVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYSYI 398 (412)
Q Consensus 339 ~~~~~~~l~~~sa~~~sv~-~~l~~v~~ii~s~~~fge~~t~~~~iG~~lvl~Gv~l~~~~ 398 (412)
.++...++++.+....... ..+.++++.++++++|||++|+.+++|..++++|+.+.+..
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445578899888887665 78999999999999999999999999999999999988754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=53.42 E-value=30 Score=33.16 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHH
Q 015159 380 QTGIGTVIAIAGVAAYSYIKAQMEE 404 (412)
Q Consensus 380 ~~~iG~~lvl~Gv~l~~~~~~~~~~ 404 (412)
..+.|.++++.|+.+|...++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 4566888899999999877655443
No 6
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=27.75 E-value=78 Score=18.98 Aligned_cols=8 Identities=0% Similarity=-0.022 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015159 389 IAGVAAYS 396 (412)
Q Consensus 389 l~Gv~l~~ 396 (412)
+.++.++-
T Consensus 12 ~~~ifYFl 19 (37)
T 2rdd_B 12 FGLIFYFM 19 (37)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.28 E-value=6.9e+02 Score=22.72 Aligned_cols=22 Identities=9% Similarity=-0.177 Sum_probs=10.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHH
Q 015159 377 ISTQTGIGTVIAIAGVAAYSYI 398 (412)
Q Consensus 377 ~t~~~~iG~~lvl~Gv~l~~~~ 398 (412)
.....++..++.+++..+....
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 412 WDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544443
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=10.88 E-value=7.1e+02 Score=20.96 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhccchHHHHHHHhhhHHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcC
Q 015159 170 KLLKLLIPVAVCHALGHVTSNVS---FAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLT 245 (412)
Q Consensus 170 ~~~~~~~~~~l~~~~~~~~~~~a---l~~~s~s~~~ii~~~~Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~ 245 (412)
+..+.+...+++-++-.++.+.+ +-..+++ ..++.+.+++.+.++-.++=.....+=++++.+|+=++..+
T Consensus 15 ~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFagg 88 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTGG 88 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccCC
Confidence 35566777777666555555442 2222333 24666777777665544443444445556666676555544
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=10.66 E-value=79 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHh
Q 015159 387 IAIAGVAAYSYIKAQ 401 (412)
Q Consensus 387 lvl~Gv~l~~~~~~~ 401 (412)
-.++|..+|...|++
T Consensus 41 ~~figl~~Y~~~r~~ 55 (61)
T 2h3o_A 41 AIFIGLTIYAIQRKR 55 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 344488899877654
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=10.57 E-value=81 Score=19.93 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q 015159 382 GIGTVIAIAGVAAYSYIKAQMEE 404 (412)
Q Consensus 382 ~iG~~lvl~Gv~l~~~~~~~~~~ 404 (412)
+++.+++..++++|-+.+++++|
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSC
T ss_pred HHHHHHHHHHHHHHhhhhHhhcc
Done!