Query 015159
Match_columns 412
No_of_seqs 288 out of 2092
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 07:43:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 41.6 1.1E+02 0.008 26.8 24.2 81 209-292 239-321 (383)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.9 4.1E+02 0.03 21.2 8.0 53 175-231 5-57 (248)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 7.0 5.7E+02 0.042 20.7 29.2 13 355-367 382-394 (447)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 6.7 4.8E+02 0.035 19.6 10.1 50 347-396 61-110 (199)
5 d2e74g1 f.23.26.1 (G:9-35) Pet 6.7 1.6E+02 0.012 14.6 2.0 18 252-269 3-20 (27)
6 d1iwga8 f.35.1.1 (A:513-566,A: 5.8 5.7E+02 0.042 19.5 11.0 31 363-393 95-125 (222)
7 d1q90a3 f.23.23.1 (A:248-292) 4.8 1.7E+02 0.012 16.9 1.6 27 252-278 6-32 (45)
8 d1r3jc_ f.14.1.1 (C:) Potassiu 3.0 6.8E+02 0.05 16.2 4.4 7 386-392 73-79 (103)
9 d2hyda2 f.37.1.1 (A:1-323) Put 2.7 1E+03 0.074 17.8 6.0 15 373-387 159-173 (323)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.0 7E+02 0.051 14.1 3.7 21 380-400 11-31 (46)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=41.59 E-value=1.1e+02 Score=26.77 Aligned_cols=81 Identities=9% Similarity=0.047 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCcccChhhHHHHHHHHHHHHhhhcCcccccHHH-HHHHHHHH-HHHHHHHHHHHHhcCCCChhhHHHH
Q 015159 209 PFFNAAASQFILGQQLPLTLWLSLAPVVIGVSMASLTELSFNWTG-FISAMISN-ISFTYRSIYSKKAMTDMDSTNIYAY 286 (412)
Q Consensus 209 Pvf~~lls~~~l~er~~~~~~l~l~l~~~Gv~l~~~~~~~~~~~G-~~l~l~s~-l~~a~~~v~~kk~~~~~~~~~~~~~ 286 (412)
-.++.++...+.++|.+......- .++|.+-++....-.++++ ++..+++. +|+-....+.+|. +--|+......
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~v 315 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGV 315 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEee
Confidence 333333444445667776654432 3456665554433344444 44444433 4444444444443 33455544444
Q ss_pred HHHHHH
Q 015159 287 ISIIAL 292 (412)
Q Consensus 287 ~~~~~~ 292 (412)
....+.
T Consensus 316 Hg~~Gi 321 (383)
T d1u7ga_ 316 HGVCGI 321 (383)
T ss_dssp HHHHHH
T ss_pred hhhhHH
Confidence 333333
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.85 E-value=4.1e+02 Score=21.24 Aligned_cols=53 Identities=8% Similarity=-0.039 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhccchHHHHHHHhhhHHHHHHHHHHHhCcccChhhHHH
Q 015159 175 LIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQQLPLTLWLS 231 (412)
Q Consensus 175 ~~~~~l~~~~~~~~~~~al~~~s~s~~~ii~~~~Pvf~~lls~~~l~er~~~~~~l~ 231 (412)
+++++++..+..+.....+..-+..++. ..-+.+.++.++++.+|.-.++|+-
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 4566666665555555444444443333 3345566677888888888888764
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.96 E-value=5.7e+02 Score=20.70 Aligned_cols=13 Identities=0% Similarity=-0.279 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 015159 355 AVGNVLKRVFVIG 367 (412)
Q Consensus 355 sv~~~l~~v~~ii 367 (412)
++.+.+..+.+.+
T Consensus 382 g~~~~~~~~~g~~ 394 (447)
T d1pw4a_ 382 GFTGLFGYLGGSV 394 (447)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.70 E-value=4.8e+02 Score=19.56 Aligned_cols=50 Identities=22% Similarity=0.111 Sum_probs=33.7
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHHHHHH
Q 015159 347 ERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQTGIGTVIAIAGVAAYS 396 (412)
Q Consensus 347 ~~~sa~~~sv~~~l~~v~~ii~s~~~fge~~t~~~~iG~~lvl~Gv~l~~ 396 (412)
+...+.........-.+........++|.+++.....+..+.++...-+.
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~~ 110 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDA 110 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhcccH
Confidence 44444444445555555666666778899999999888888777766443
No 5
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.70 E-value=1.6e+02 Score=14.61 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015159 252 TGFISAMISNISFTYRSI 269 (412)
Q Consensus 252 ~G~~l~l~s~l~~a~~~v 269 (412)
.|.+.+-++.+++|.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 466777777777777653
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=5.7e+02 Score=19.47 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCccchhhHHHHHHHHHHHH
Q 015159 363 VFVIGFSILAFGNKISTQTGIGTVIAIAGVA 393 (412)
Q Consensus 363 v~~ii~s~~~fge~~t~~~~iG~~lvl~Gv~ 393 (412)
+...+.+..+++.+++....+|.++.++-..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 3445566778899999999888877554444
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.77 E-value=1.7e+02 Score=16.86 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 015159 252 TGFISAMISNISFTYRSIYSKKAMTDM 278 (412)
Q Consensus 252 ~G~~l~l~s~l~~a~~~v~~kk~~~~~ 278 (412)
.|++.-+++.+..-...|+-||-.+++
T Consensus 6 ~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 6 QGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655666666666666666655543
No 8
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=2.95 E-value=6.8e+02 Score=16.22 Aligned_cols=7 Identities=43% Similarity=0.999 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 015159 386 VIAIAGV 392 (412)
Q Consensus 386 ~lvl~Gv 392 (412)
..++.|+
T Consensus 73 ~~~~~Gi 79 (103)
T d1r3jc_ 73 VVMVAGI 79 (103)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 9
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=2.74 E-value=1e+03 Score=17.80 Aligned_cols=15 Identities=7% Similarity=-0.095 Sum_probs=5.8
Q ss_pred hCCccchhhHHHHHH
Q 015159 373 FGNKISTQTGIGTVI 387 (412)
Q Consensus 373 fge~~t~~~~iG~~l 387 (412)
.+-.+....++...+
T Consensus 159 ~~~~l~li~l~~~~~ 173 (323)
T d2hyda2 159 LDVKLTLAALFIFPF 173 (323)
T ss_dssp HCTTTHHHHTTHHHH
T ss_pred hhhhHHHHHHHHHHH
Confidence 333444433333333
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.02 E-value=7e+02 Score=14.09 Aligned_cols=21 Identities=0% Similarity=-0.306 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 015159 380 QTGIGTVIAIAGVAAYSYIKA 400 (412)
Q Consensus 380 ~~~iG~~lvl~Gv~l~~~~~~ 400 (412)
..++.+..++.++..|.....
T Consensus 11 ~Kv~~~l~~l~~l~yy~KR~~ 31 (46)
T d1ppjd2 11 LKMLLMMGLLLPLVYAMKRHK 31 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345666667777776664443
Done!