Query 015160
Match_columns 412
No_of_seqs 248 out of 934
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07942 N2227: N2227-like pro 100.0 1.1E-82 2.3E-87 620.3 24.5 260 142-402 8-270 (270)
2 KOG2798 Putative trehalase [Ca 100.0 2.1E-81 4.6E-86 613.9 20.5 295 103-404 69-366 (369)
3 PRK11207 tellurite resistance 99.7 1.1E-16 2.4E-21 148.9 13.6 137 189-373 30-168 (197)
4 PF05724 TPMT: Thiopurine S-me 99.7 3.5E-16 7.5E-21 149.0 13.3 151 189-374 37-189 (218)
5 PF13489 Methyltransf_23: Meth 99.7 5.1E-16 1.1E-20 135.7 12.6 133 189-373 22-161 (161)
6 PRK14103 trans-aconitate 2-met 99.7 2.9E-15 6.3E-20 143.9 18.4 134 189-372 29-181 (255)
7 PLN02233 ubiquinone biosynthes 99.7 7.3E-15 1.6E-19 142.7 21.0 194 139-374 22-247 (261)
8 PRK13255 thiopurine S-methyltr 99.7 2.9E-15 6.4E-20 142.5 17.5 168 169-375 21-190 (218)
9 TIGR03840 TMPT_Se_Te thiopurin 99.7 3.7E-15 8E-20 141.3 17.7 150 189-374 34-186 (213)
10 COG2226 UbiE Methylase involve 99.7 4.7E-15 1E-19 143.3 17.8 178 145-372 10-221 (238)
11 PRK11036 putative S-adenosyl-L 99.7 3.6E-15 7.7E-20 143.4 16.8 156 189-384 44-218 (255)
12 PLN02396 hexaprenyldihydroxybe 99.6 1.3E-14 2.9E-19 145.6 20.9 144 189-374 131-288 (322)
13 TIGR00477 tehB tellurite resis 99.6 2.7E-15 5.9E-20 139.4 14.8 137 189-374 30-168 (195)
14 PRK13256 thiopurine S-methyltr 99.6 7.5E-15 1.6E-19 140.9 16.2 163 172-372 30-194 (226)
15 PRK10258 biotin biosynthesis p 99.6 1.5E-14 3.3E-19 138.1 18.0 174 144-372 5-184 (251)
16 PF01209 Ubie_methyltran: ubiE 99.6 2.1E-15 4.4E-20 145.0 10.0 143 189-373 47-218 (233)
17 PF12847 Methyltransf_18: Meth 99.6 5.2E-15 1.1E-19 123.0 10.9 102 189-332 1-109 (112)
18 PRK12335 tellurite resistance 99.6 2E-14 4.4E-19 141.0 16.6 134 190-373 121-257 (287)
19 TIGR02752 MenG_heptapren 2-hep 99.6 1.5E-13 3.2E-18 129.2 20.3 185 145-374 4-217 (231)
20 PRK15068 tRNA mo(5)U34 methylt 99.6 3E-14 6.4E-19 142.8 16.1 143 189-374 122-273 (322)
21 PLN02244 tocopherol O-methyltr 99.6 4E-14 8.6E-19 142.5 16.9 145 189-374 118-277 (340)
22 PF08241 Methyltransf_11: Meth 99.6 2.8E-14 6.2E-19 113.6 10.0 93 194-331 1-94 (95)
23 PRK01683 trans-aconitate 2-met 99.5 1.7E-13 3.8E-18 131.1 17.1 138 189-374 31-186 (258)
24 PF03848 TehB: Tellurite resis 99.5 1.1E-13 2.4E-18 129.9 14.2 134 189-372 30-166 (192)
25 TIGR00452 methyltransferase, p 99.5 1.1E-13 2.3E-18 138.7 14.7 143 189-374 121-272 (314)
26 smart00828 PKS_MT Methyltransf 99.5 3.3E-13 7.1E-18 126.3 14.7 141 192-375 2-144 (224)
27 TIGR00740 methyltransferase, p 99.5 6.5E-13 1.4E-17 126.3 16.7 141 189-372 53-224 (239)
28 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.3E-13 5E-18 131.2 13.5 206 150-402 21-241 (243)
29 PTZ00098 phosphoethanolamine N 99.5 3.8E-13 8.3E-18 130.8 14.5 142 189-374 52-201 (263)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.8E-13 1.5E-17 127.5 16.0 140 189-372 56-227 (247)
31 PLN02585 magnesium protoporphy 99.5 1.4E-12 2.9E-17 130.8 17.2 147 189-376 144-300 (315)
32 TIGR02021 BchM-ChlM magnesium 99.5 2.5E-12 5.3E-17 120.7 17.6 160 171-380 42-211 (219)
33 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.9E-12 6.3E-17 129.7 18.3 140 189-375 113-256 (340)
34 PF02353 CMAS: Mycolic acid cy 99.5 2.5E-12 5.5E-17 126.4 17.1 156 174-377 50-219 (273)
35 PRK11873 arsM arsenite S-adeno 99.4 2E-12 4.2E-17 125.1 15.6 141 189-373 77-228 (272)
36 PF13847 Methyltransf_31: Meth 99.4 8.2E-13 1.8E-17 117.1 11.4 103 189-332 3-108 (152)
37 PRK00216 ubiE ubiquinone/menaq 99.4 1.3E-11 2.9E-16 114.9 19.0 145 189-374 51-224 (239)
38 PRK05134 bifunctional 3-demeth 99.4 1.9E-11 4.2E-16 115.2 19.2 157 173-374 35-204 (233)
39 PLN02336 phosphoethanolamine N 99.4 5.7E-12 1.2E-16 131.2 17.0 140 189-373 266-412 (475)
40 PRK05785 hypothetical protein; 99.4 2.3E-12 5E-17 122.9 12.7 105 174-333 41-146 (226)
41 TIGR03438 probable methyltrans 99.4 6.9E-12 1.5E-16 124.3 15.9 140 147-331 26-174 (301)
42 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.9E-11 4.1E-16 112.7 17.6 142 189-374 39-209 (223)
43 TIGR01983 UbiG ubiquinone bios 99.4 2.6E-11 5.6E-16 113.1 18.7 145 189-374 45-202 (224)
44 PRK00107 gidB 16S rRNA methylt 99.4 8.5E-11 1.8E-15 109.7 19.7 122 189-374 45-168 (187)
45 TIGR00537 hemK_rel_arch HemK-r 99.4 2.9E-11 6.3E-16 110.2 16.0 125 189-374 19-164 (179)
46 PRK07580 Mg-protoporphyrin IX 99.3 4.8E-11 1E-15 111.5 17.5 142 189-375 63-214 (230)
47 TIGR02072 BioC biotin biosynth 99.3 9E-12 1.9E-16 115.7 12.3 137 189-372 34-173 (240)
48 PRK08317 hypothetical protein; 99.3 4.1E-11 9E-16 110.8 16.1 140 189-373 19-174 (241)
49 PF08242 Methyltransf_12: Meth 99.3 3.6E-13 7.9E-18 110.6 2.1 97 194-330 1-99 (99)
50 TIGR00138 gidB 16S rRNA methyl 99.3 4.1E-11 9E-16 110.9 15.7 122 190-375 43-169 (181)
51 PRK11705 cyclopropane fatty ac 99.3 4.8E-11 1E-15 122.4 16.6 136 189-374 167-311 (383)
52 PRK11088 rrmA 23S rRNA methylt 99.3 9.5E-12 2.1E-16 121.1 10.8 97 189-339 85-186 (272)
53 PRK08287 cobalt-precorrin-6Y C 99.3 1.8E-10 3.8E-15 105.8 18.0 122 189-373 31-154 (187)
54 PF13649 Methyltransf_25: Meth 99.3 9.3E-12 2E-16 103.0 8.0 93 193-328 1-101 (101)
55 KOG1270 Methyltransferases [Co 99.3 2.5E-11 5.5E-16 118.4 11.8 143 190-372 90-246 (282)
56 TIGR00406 prmA ribosomal prote 99.3 8.7E-11 1.9E-15 115.8 15.5 133 174-374 149-282 (288)
57 PRK00517 prmA ribosomal protei 99.3 9E-11 2E-15 113.1 15.2 128 174-374 109-237 (250)
58 PRK06202 hypothetical protein; 99.3 8.8E-11 1.9E-15 111.2 14.9 139 189-374 60-221 (232)
59 KOG1540 Ubiquinone biosynthesi 99.3 5.2E-11 1.1E-15 116.0 13.2 145 189-372 100-278 (296)
60 PLN02336 phosphoethanolamine N 99.3 5.4E-11 1.2E-15 124.0 14.4 141 189-372 37-179 (475)
61 TIGR02081 metW methionine bios 99.3 1.9E-10 4.1E-15 106.3 16.3 147 175-374 4-166 (194)
62 COG2230 Cfa Cyclopropane fatty 99.2 1.2E-10 2.7E-15 115.1 14.8 155 174-376 60-224 (283)
63 PRK14968 putative methyltransf 99.2 3.2E-10 6.9E-15 102.3 15.9 129 189-374 23-172 (188)
64 PRK00377 cbiT cobalt-precorrin 99.2 3.8E-10 8.2E-15 104.9 16.8 153 189-401 40-197 (198)
65 TIGR02469 CbiT precorrin-6Y C5 99.2 2.7E-10 5.9E-15 95.5 13.5 100 189-332 19-120 (124)
66 PRK14967 putative methyltransf 99.2 2.9E-10 6.2E-15 107.5 15.2 125 189-373 36-182 (223)
67 PF13659 Methyltransf_26: Meth 99.2 9.8E-11 2.1E-15 98.2 9.2 104 191-333 2-114 (117)
68 KOG1271 Methyltransferases [Ge 99.2 1.9E-10 4.1E-15 107.4 11.7 151 159-373 42-203 (227)
69 TIGR01177 conserved hypothetic 99.2 3E-10 6.6E-15 113.7 12.7 123 189-373 182-313 (329)
70 PRK00121 trmB tRNA (guanine-N( 99.2 2.4E-10 5.1E-15 107.1 11.0 127 189-371 40-177 (202)
71 TIGR03534 RF_mod_PrmC protein- 99.1 1.1E-09 2.3E-14 103.6 15.5 137 174-374 76-240 (251)
72 PRK04266 fibrillarin; Provisio 99.1 2.7E-09 5.9E-14 102.4 17.3 136 189-374 72-209 (226)
73 PHA03411 putative methyltransf 99.1 7.9E-10 1.7E-14 109.2 13.1 133 190-380 65-219 (279)
74 TIGR02716 C20_methyl_CrtF C-20 99.1 2.8E-09 6E-14 105.3 17.0 140 189-372 149-303 (306)
75 smart00138 MeTrc Methyltransfe 99.1 5.4E-10 1.2E-14 109.2 11.2 121 189-331 99-239 (264)
76 TIGR03587 Pse_Me-ase pseudamin 99.1 1E-09 2.2E-14 103.4 12.6 92 189-331 43-139 (204)
77 PF05401 NodS: Nodulation prot 99.1 5E-10 1.1E-14 105.6 9.8 130 189-372 43-176 (201)
78 PF08003 Methyltransf_9: Prote 99.1 1.5E-09 3.2E-14 108.4 13.6 151 177-372 106-264 (315)
79 PTZ00146 fibrillarin; Provisio 99.0 4.1E-09 8.8E-14 104.9 15.2 165 156-382 107-277 (293)
80 PRK07402 precorrin-6B methylas 99.0 1.3E-08 2.9E-13 94.2 17.3 99 189-332 40-140 (196)
81 PRK11188 rrmJ 23S rRNA methylt 99.0 2.6E-09 5.7E-14 100.9 12.6 137 189-401 51-206 (209)
82 PRK13944 protein-L-isoaspartat 99.0 3.6E-09 7.9E-14 99.2 13.4 110 173-332 59-171 (205)
83 COG4123 Predicted O-methyltran 99.0 6.7E-09 1.4E-13 101.2 15.4 152 189-404 44-215 (248)
84 TIGR03533 L3_gln_methyl protei 99.0 9.5E-09 2E-13 101.4 16.6 124 190-373 122-272 (284)
85 TIGR00080 pimt protein-L-isoas 99.0 3.4E-09 7.3E-14 99.7 12.7 108 174-332 65-175 (215)
86 PRK09328 N5-glutamine S-adenos 99.0 9E-09 1.9E-13 99.1 15.9 124 189-373 108-260 (275)
87 PF05175 MTS: Methyltransferas 99.0 5E-09 1.1E-13 95.4 13.3 109 173-331 22-137 (170)
88 PRK06922 hypothetical protein; 99.0 1.5E-09 3.3E-14 117.6 11.3 104 189-333 418-536 (677)
89 TIGR00091 tRNA (guanine-N(7)-) 99.0 1.9E-09 4E-14 100.2 9.7 129 189-372 16-155 (194)
90 PRK13942 protein-L-isoaspartat 99.0 7.7E-09 1.7E-13 97.6 12.6 112 170-332 60-174 (212)
91 cd02440 AdoMet_MTases S-adenos 99.0 7.3E-09 1.6E-13 81.0 10.4 100 192-332 1-102 (107)
92 PRK15001 SAM-dependent 23S rib 99.0 7.3E-09 1.6E-13 106.5 13.2 115 176-333 218-339 (378)
93 PF01234 NNMT_PNMT_TEMT: NNMT/ 99.0 3.1E-09 6.7E-14 104.0 9.9 221 150-401 20-256 (256)
94 PRK14966 unknown domain/N5-glu 99.0 2.5E-08 5.4E-13 103.7 17.1 125 190-374 252-404 (423)
95 PRK00312 pcm protein-L-isoaspa 98.9 1.5E-08 3.3E-13 94.8 13.0 109 173-332 65-173 (212)
96 TIGR03704 PrmC_rel_meth putati 98.9 2.7E-08 5.9E-13 96.6 15.0 125 190-374 87-239 (251)
97 COG2264 PrmA Ribosomal protein 98.9 1.5E-08 3.3E-13 101.2 13.5 136 173-374 151-287 (300)
98 PF06325 PrmA: Ribosomal prote 98.9 5.6E-09 1.2E-13 104.1 10.2 132 173-374 150-282 (295)
99 PRK09489 rsmC 16S ribosomal RN 98.9 1.4E-08 3E-13 103.0 13.2 100 190-334 197-303 (342)
100 PHA03412 putative methyltransf 98.9 1.2E-08 2.6E-13 99.0 11.7 140 190-381 50-208 (241)
101 PRK11805 N5-glutamine S-adenos 98.9 5.9E-08 1.3E-12 97.0 16.4 121 191-372 135-283 (307)
102 TIGR00536 hemK_fam HemK family 98.9 7.6E-08 1.6E-12 94.7 16.8 123 191-373 116-267 (284)
103 KOG4300 Predicted methyltransf 98.9 1.2E-08 2.7E-13 97.1 10.2 103 189-332 76-180 (252)
104 COG4106 Tam Trans-aconitate me 98.8 5.9E-09 1.3E-13 99.8 7.0 119 158-331 2-126 (257)
105 PRK01544 bifunctional N5-gluta 98.8 6.2E-08 1.3E-12 103.0 14.9 124 190-373 139-291 (506)
106 KOG2361 Predicted methyltransf 98.8 2.5E-08 5.5E-13 96.6 10.9 176 151-374 31-236 (264)
107 PF06080 DUF938: Protein of un 98.8 8E-08 1.7E-12 91.3 14.0 157 172-373 12-190 (204)
108 PF07021 MetW: Methionine bios 98.8 8.2E-08 1.8E-12 90.4 13.6 137 189-376 13-168 (193)
109 COG4976 Predicted methyltransf 98.8 9.3E-09 2E-13 99.2 6.8 154 189-402 125-286 (287)
110 TIGR00438 rrmJ cell division p 98.8 3E-08 6.5E-13 91.2 9.8 94 189-332 32-144 (188)
111 PRK00811 spermidine synthase; 98.8 4.2E-08 9E-13 96.8 11.2 108 189-332 76-189 (283)
112 PRK14121 tRNA (guanine-N(7)-)- 98.8 8.2E-08 1.8E-12 99.1 13.4 144 142-331 68-232 (390)
113 PLN02232 ubiquinone biosynthes 98.8 4.2E-08 9E-13 88.7 9.6 95 277-374 27-146 (160)
114 smart00650 rADc Ribosomal RNA 98.7 6.4E-08 1.4E-12 87.7 10.3 97 189-331 13-110 (169)
115 TIGR00417 speE spermidine synt 98.7 1.5E-07 3.3E-12 92.0 12.3 122 170-332 57-184 (270)
116 PLN03075 nicotianamine synthas 98.7 1.7E-07 3.6E-12 93.7 12.1 104 189-332 123-231 (296)
117 PRK01581 speE spermidine synth 98.7 5.2E-07 1.1E-11 92.5 15.8 139 189-375 150-297 (374)
118 PRK03612 spermidine synthase; 98.7 4.5E-07 9.8E-12 96.7 15.2 133 189-368 297-437 (521)
119 KOG1541 Predicted protein carb 98.7 1.8E-07 3.8E-12 90.0 10.8 121 189-369 50-181 (270)
120 PRK04457 spermidine synthase; 98.7 2.5E-07 5.5E-12 90.4 12.2 103 189-331 66-174 (262)
121 KOG2940 Predicted methyltransf 98.6 6.6E-08 1.4E-12 93.5 7.5 176 151-373 34-225 (325)
122 PRK13943 protein-L-isoaspartat 98.6 3.4E-07 7.4E-12 92.4 12.9 108 174-332 68-178 (322)
123 PLN02781 Probable caffeoyl-CoA 98.6 3.7E-07 8E-12 87.8 12.3 118 173-339 58-182 (234)
124 PRK15128 23S rRNA m(5)C1962 me 98.6 7.1E-07 1.5E-11 92.4 13.6 125 189-365 220-355 (396)
125 PRK11783 rlmL 23S rRNA m(2)G24 98.6 7.8E-07 1.7E-11 98.1 14.6 140 189-384 538-691 (702)
126 PF05148 Methyltransf_8: Hypot 98.6 1.3E-06 2.9E-11 83.4 14.2 144 145-374 41-184 (219)
127 PF05219 DREV: DREV methyltran 98.6 1.7E-06 3.7E-11 84.9 14.7 141 189-383 94-246 (265)
128 PF03291 Pox_MCEL: mRNA cappin 98.5 8.7E-07 1.9E-11 89.8 12.5 155 189-374 62-266 (331)
129 PRK10901 16S rRNA methyltransf 98.5 8.3E-07 1.8E-11 92.3 12.2 130 189-372 244-398 (427)
130 PLN02366 spermidine synthase 98.5 1.2E-06 2.6E-11 88.0 12.8 108 189-332 91-204 (308)
131 PF05891 Methyltransf_PK: AdoM 98.5 2.8E-06 6E-11 81.5 14.3 140 189-374 55-200 (218)
132 PRK14904 16S rRNA methyltransf 98.5 1E-06 2.2E-11 92.0 12.1 101 189-332 250-375 (445)
133 PLN02672 methionine S-methyltr 98.5 2.2E-06 4.8E-11 98.1 14.9 142 190-374 119-302 (1082)
134 COG2242 CobL Precorrin-6B meth 98.5 8.3E-06 1.8E-10 76.6 16.2 122 189-373 34-159 (187)
135 PF05185 PRMT5: PRMT5 arginine 98.4 1.4E-06 3.1E-11 91.5 11.3 124 165-331 160-294 (448)
136 PF01135 PCMT: Protein-L-isoas 98.4 2.3E-06 5E-11 81.5 11.7 139 146-335 18-174 (209)
137 KOG2899 Predicted methyltransf 98.4 9.8E-06 2.1E-10 79.1 15.9 198 189-405 58-280 (288)
138 COG2890 HemK Methylase of poly 98.4 8.2E-06 1.8E-10 80.8 15.7 119 192-372 113-260 (280)
139 PF01596 Methyltransf_3: O-met 98.4 1.3E-06 2.7E-11 83.0 9.5 111 174-332 36-153 (205)
140 PRK14903 16S rRNA methyltransf 98.4 2E-06 4.4E-11 89.8 11.0 102 189-331 237-363 (431)
141 PRK04148 hypothetical protein; 98.4 4.1E-06 9E-11 74.9 11.2 100 173-326 3-103 (134)
142 PLN02476 O-methyltransferase 98.4 3.3E-06 7.2E-11 83.8 11.6 117 174-339 109-232 (278)
143 PRK14902 16S rRNA methyltransf 98.3 4E-06 8.6E-11 87.6 11.9 102 189-331 250-376 (444)
144 KOG3045 Predicted RNA methylas 98.3 4.7E-06 1E-10 82.0 10.9 141 146-374 150-290 (325)
145 PF11968 DUF3321: Putative met 98.3 1.9E-05 4.1E-10 75.8 14.7 155 170-404 31-195 (219)
146 TIGR00446 nop2p NOL1/NOP2/sun 98.3 5.1E-06 1.1E-10 81.1 10.8 101 189-331 71-196 (264)
147 COG2521 Predicted archaeal met 98.3 4.1E-06 8.8E-11 81.4 9.7 153 173-373 119-275 (287)
148 PRK03522 rumB 23S rRNA methylu 98.3 8.2E-06 1.8E-10 81.5 12.2 39 190-228 174-212 (315)
149 PRK13168 rumA 23S rRNA m(5)U19 98.3 7.4E-06 1.6E-10 85.6 12.1 124 189-374 297-423 (443)
150 COG2813 RsmC 16S RNA G1207 met 98.3 1.1E-05 2.4E-10 80.7 12.7 117 176-339 148-273 (300)
151 PRK14896 ksgA 16S ribosomal RN 98.2 1.2E-05 2.6E-10 78.2 12.2 52 174-228 17-68 (258)
152 PRK10909 rsmD 16S rRNA m(2)G96 98.2 9.9E-06 2.1E-10 76.6 10.7 39 190-228 54-93 (199)
153 COG2519 GCD14 tRNA(1-methylade 98.2 1.8E-05 4E-10 77.5 12.8 118 169-336 77-197 (256)
154 PF01739 CheR: CheR methyltran 98.2 4.1E-06 8.8E-11 79.1 8.0 124 189-331 31-172 (196)
155 KOG3010 Methyltransferase [Gen 98.2 4.8E-06 1E-10 81.0 8.5 95 192-331 36-133 (261)
156 PLN02589 caffeoyl-CoA O-methyl 98.2 1.3E-05 2.7E-10 78.4 11.1 117 174-339 70-194 (247)
157 PRK14901 16S rRNA methyltransf 98.2 7.6E-06 1.6E-10 85.4 9.9 131 189-371 252-409 (434)
158 PRK00274 ksgA 16S ribosomal RN 98.2 1.5E-05 3.2E-10 78.2 11.4 52 174-228 30-81 (272)
159 TIGR00479 rumA 23S rRNA (uraci 98.2 1.1E-05 2.3E-10 83.8 10.7 111 173-330 279-392 (431)
160 PTZ00338 dimethyladenosine tra 98.2 1.5E-05 3.2E-10 79.6 11.2 91 174-310 24-116 (294)
161 KOG1975 mRNA cap methyltransfe 98.1 1E-05 2.2E-10 81.8 9.4 178 160-374 84-316 (389)
162 TIGR00563 rsmB ribosomal RNA s 98.1 1.8E-05 4E-10 82.2 11.5 41 189-229 238-280 (426)
163 TIGR00095 RNA methyltransferas 98.1 2.2E-05 4.7E-10 73.4 10.8 39 190-228 50-89 (189)
164 COG1041 Predicted DNA modifica 98.1 1.1E-05 2.5E-10 82.0 9.5 141 170-374 180-329 (347)
165 TIGR00478 tly hemolysin TlyA f 98.1 7.1E-05 1.5E-09 72.3 14.1 38 189-226 75-113 (228)
166 COG2263 Predicted RNA methylas 98.1 1.7E-05 3.6E-10 74.9 9.1 125 189-381 45-178 (198)
167 COG2518 Pcm Protein-L-isoaspar 98.0 6.2E-05 1.3E-09 72.0 12.5 110 174-334 60-170 (209)
168 PF12147 Methyltransf_20: Puta 98.0 0.00012 2.6E-09 73.2 14.3 210 115-374 67-297 (311)
169 PF08704 GCD14: tRNA methyltra 98.0 4.6E-05 1E-09 74.5 11.1 154 157-372 11-168 (247)
170 TIGR02085 meth_trns_rumB 23S r 98.0 4.3E-05 9.3E-10 78.4 11.1 119 190-374 234-355 (374)
171 PRK10611 chemotaxis methyltran 98.0 3.7E-05 8.1E-10 76.7 10.2 121 189-331 115-259 (287)
172 COG4122 Predicted O-methyltran 98.0 5.4E-05 1.2E-09 72.9 10.9 99 189-331 59-163 (219)
173 PF01170 UPF0020: Putative RNA 97.9 2.6E-05 5.7E-10 72.1 7.8 103 189-332 28-149 (179)
174 PF02390 Methyltransf_4: Putat 97.9 2.3E-05 5.1E-10 73.6 7.5 102 191-331 19-130 (195)
175 TIGR00755 ksgA dimethyladenosi 97.9 0.0001 2.3E-09 71.2 12.2 52 174-228 17-68 (253)
176 PF01564 Spermine_synth: Sperm 97.9 0.0002 4.4E-09 69.6 14.1 107 189-332 76-189 (246)
177 TIGR03439 methyl_EasF probable 97.9 0.00025 5.5E-09 71.8 15.1 139 148-331 40-194 (319)
178 PLN02823 spermine synthase 97.9 6.2E-05 1.3E-09 76.6 10.6 109 189-335 103-222 (336)
179 PF00891 Methyltransf_2: O-met 97.9 7.5E-05 1.6E-09 71.1 10.6 95 189-335 100-200 (241)
180 PF03141 Methyltransf_29: Puta 97.9 8.9E-06 1.9E-10 86.0 4.2 147 174-374 101-252 (506)
181 KOG1499 Protein arginine N-met 97.9 4.8E-05 1E-09 77.4 9.1 101 189-331 60-164 (346)
182 COG0500 SmtA SAM-dependent met 97.9 0.00013 2.8E-09 57.6 9.8 98 193-332 52-153 (257)
183 PRK00536 speE spermidine synth 97.8 0.00018 3.8E-09 71.1 11.0 98 189-332 72-169 (262)
184 PRK11727 23S rRNA mA1618 methy 97.8 0.00055 1.2E-08 69.4 14.5 43 189-231 114-158 (321)
185 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.00017 3.8E-09 71.2 10.4 122 173-335 33-184 (311)
186 COG1352 CheR Methylase of chem 97.7 0.00027 5.8E-09 70.0 10.9 125 189-331 96-238 (268)
187 COG0421 SpeE Spermidine syntha 97.7 0.00049 1.1E-08 68.6 12.1 105 191-332 78-188 (282)
188 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.0003 6.6E-09 77.9 11.1 104 189-331 190-344 (702)
189 KOG1661 Protein-L-isoaspartate 97.6 0.00033 7.2E-09 67.3 9.2 123 170-335 68-195 (237)
190 PF02475 Met_10: Met-10+ like- 97.5 0.00043 9.4E-09 65.7 8.5 120 143-330 77-198 (200)
191 TIGR02987 met_A_Alw26 type II 97.5 0.00083 1.8E-08 71.6 11.6 43 189-231 31-83 (524)
192 COG3963 Phospholipid N-methylt 97.5 0.0008 1.7E-08 62.8 9.8 104 189-336 48-160 (194)
193 COG0220 Predicted S-adenosylme 97.5 0.00058 1.3E-08 66.1 9.3 102 190-331 49-161 (227)
194 PRK00050 16S rRNA m(4)C1402 me 97.5 0.0012 2.6E-08 66.2 11.9 52 174-228 7-61 (296)
195 COG0030 KsgA Dimethyladenosine 97.5 0.00093 2E-08 65.9 10.8 79 189-310 30-110 (259)
196 KOG1269 SAM-dependent methyltr 97.5 0.00031 6.6E-09 72.4 7.6 143 189-372 110-264 (364)
197 KOG2352 Predicted spermine/spe 97.4 0.0012 2.7E-08 69.8 11.3 121 165-333 28-160 (482)
198 PF10294 Methyltransf_16: Puta 97.4 0.00071 1.5E-08 62.2 8.4 104 189-331 45-153 (173)
199 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0013 2.8E-08 68.1 9.6 96 190-331 58-155 (382)
200 PF08123 DOT1: Histone methyla 97.2 0.0012 2.6E-08 62.9 8.3 117 189-336 42-160 (205)
201 PF01728 FtsJ: FtsJ-like methy 97.2 0.00089 1.9E-08 61.0 7.2 34 189-222 23-59 (181)
202 KOG3178 Hydroxyindole-O-methyl 97.1 0.005 1.1E-07 62.9 12.1 132 191-372 179-327 (342)
203 PF09445 Methyltransf_15: RNA 97.1 0.00085 1.8E-08 62.0 5.5 73 192-303 2-75 (163)
204 PF03602 Cons_hypoth95: Conser 97.0 0.0032 6.9E-08 58.8 8.6 102 189-332 42-151 (183)
205 PRK01544 bifunctional N5-gluta 97.0 0.0031 6.8E-08 67.5 9.4 102 189-331 347-459 (506)
206 PF09243 Rsm22: Mitochondrial 97.0 0.0082 1.8E-07 59.3 11.5 58 173-233 20-80 (274)
207 PF13679 Methyltransf_32: Meth 96.9 0.0071 1.5E-07 53.6 9.9 41 189-229 25-71 (141)
208 KOG1500 Protein arginine N-met 96.9 0.0063 1.4E-07 62.4 10.6 99 189-331 177-279 (517)
209 TIGR00308 TRM1 tRNA(guanine-26 96.9 0.0033 7.1E-08 65.0 8.0 97 190-331 45-144 (374)
210 PF10672 Methyltrans_SAM: S-ad 96.7 0.0062 1.4E-07 60.9 8.7 139 189-381 123-272 (286)
211 PRK11760 putative 23S rRNA C24 96.7 0.015 3.2E-07 59.9 11.1 86 189-327 211-296 (357)
212 KOG0820 Ribosomal RNA adenine 96.7 0.0086 1.9E-07 59.8 8.9 85 174-304 46-130 (315)
213 COG1092 Predicted SAM-dependen 96.6 0.0093 2E-07 62.2 9.2 134 189-372 217-363 (393)
214 PRK11933 yebU rRNA (cytosine-C 96.5 0.017 3.6E-07 61.6 10.7 40 189-228 113-155 (470)
215 COG2265 TrmA SAM-dependent met 96.5 0.0091 2E-07 62.9 8.5 125 189-374 293-419 (432)
216 TIGR02143 trmA_only tRNA (urac 96.4 0.0064 1.4E-07 62.2 6.7 38 191-228 199-236 (353)
217 COG2520 Predicted methyltransf 96.4 0.046 1E-06 56.1 12.7 146 159-374 171-319 (341)
218 COG1064 AdhP Zn-dependent alco 96.4 0.01 2.3E-07 60.7 7.6 93 189-335 166-260 (339)
219 PF01269 Fibrillarin: Fibrilla 96.3 0.022 4.7E-07 55.4 9.3 168 155-383 47-219 (229)
220 PRK05031 tRNA (uracil-5-)-meth 96.3 0.0092 2E-07 61.1 7.0 38 191-228 208-245 (362)
221 KOG3420 Predicted RNA methylas 96.3 0.0068 1.5E-07 55.7 5.1 52 174-228 36-88 (185)
222 KOG2904 Predicted methyltransf 96.2 0.033 7.2E-07 55.8 10.2 61 164-228 127-189 (328)
223 PRK10742 putative methyltransf 96.2 0.014 3E-07 57.5 7.3 41 191-231 90-130 (250)
224 PF03059 NAS: Nicotianamine sy 96.1 0.056 1.2E-06 54.0 11.3 103 189-331 120-227 (276)
225 KOG1663 O-methyltransferase [S 96.0 0.091 2E-06 51.3 11.7 136 144-331 37-180 (237)
226 PF00398 RrnaAD: Ribosomal RNA 95.7 0.046 9.9E-07 53.4 8.4 37 189-225 30-66 (262)
227 PF04445 SAM_MT: Putative SAM- 95.7 0.012 2.6E-07 57.4 4.3 80 191-302 77-156 (234)
228 KOG3987 Uncharacterized conser 95.7 0.0033 7.2E-08 60.7 0.4 141 189-382 112-265 (288)
229 COG4076 Predicted RNA methylas 95.6 0.059 1.3E-06 51.6 8.3 115 162-331 15-132 (252)
230 PF04672 Methyltransf_19: S-ad 95.5 0.15 3.2E-06 50.8 11.3 138 191-373 70-234 (267)
231 cd00315 Cyt_C5_DNA_methylase C 95.4 0.57 1.2E-05 46.2 15.2 37 192-228 2-39 (275)
232 COG0742 N6-adenine-specific me 95.3 0.12 2.6E-06 48.9 9.4 39 189-227 43-82 (187)
233 PF02527 GidB: rRNA small subu 95.2 0.15 3.3E-06 47.8 9.7 119 192-372 51-172 (184)
234 KOG3191 Predicted N6-DNA-methy 94.8 0.38 8.3E-06 45.8 11.2 55 174-228 28-85 (209)
235 PF07757 AdoMet_MTase: Predict 94.8 0.091 2E-06 45.8 6.6 67 153-220 20-89 (112)
236 PRK13699 putative methylase; P 94.8 0.21 4.6E-06 48.1 9.8 77 279-373 3-94 (227)
237 PF05958 tRNA_U5-meth_tr: tRNA 94.7 0.074 1.6E-06 54.4 6.8 52 173-228 184-235 (352)
238 COG1189 Predicted rRNA methyla 94.6 0.72 1.6E-05 45.4 12.9 151 173-374 66-223 (245)
239 COG0357 GidB Predicted S-adeno 94.4 0.7 1.5E-05 44.7 12.3 133 190-383 68-203 (215)
240 PF05430 Methyltransf_30: S-ad 94.3 0.086 1.9E-06 46.6 5.4 75 277-374 32-110 (124)
241 COG0116 Predicted N6-adenine-s 94.3 0.4 8.8E-06 50.0 11.1 104 190-334 192-344 (381)
242 PF00145 DNA_methylase: C-5 cy 94.3 0.66 1.4E-05 45.1 12.1 149 192-404 2-165 (335)
243 PF04816 DUF633: Family of unk 94.3 1 2.2E-05 43.1 12.9 122 193-375 1-124 (205)
244 COG0144 Sun tRNA and rRNA cyto 94.2 0.6 1.3E-05 48.0 12.1 41 188-228 155-199 (355)
245 COG0293 FtsJ 23S rRNA methylas 94.0 0.46 1E-05 45.6 10.0 132 175-375 33-183 (205)
246 PRK09424 pntA NAD(P) transhydr 93.9 0.33 7.1E-06 52.5 9.8 117 188-334 163-285 (509)
247 TIGR01444 fkbM_fam methyltrans 93.9 0.095 2.1E-06 45.3 4.8 37 192-228 1-39 (143)
248 PF06859 Bin3: Bicoid-interact 93.8 0.026 5.7E-07 49.1 1.1 77 297-374 1-91 (110)
249 KOG2730 Methylase [General fun 93.8 0.056 1.2E-06 52.7 3.4 39 190-228 95-133 (263)
250 KOG2915 tRNA(1-methyladenosine 93.7 0.26 5.7E-06 49.5 8.0 133 158-337 77-213 (314)
251 COG1889 NOP1 Fibrillarin-like 93.6 0.44 9.6E-06 46.1 9.0 166 155-383 50-221 (231)
252 PRK11524 putative methyltransf 93.1 0.69 1.5E-05 45.7 10.0 54 278-332 9-78 (284)
253 KOG0822 Protein kinase inhibit 93.1 0.29 6.3E-06 53.0 7.6 116 173-331 351-475 (649)
254 cd08283 FDH_like_1 Glutathione 93.0 0.42 9.1E-06 48.6 8.6 40 189-228 184-226 (386)
255 PF13578 Methyltransf_24: Meth 93.0 0.046 1E-06 45.3 1.3 94 194-331 1-102 (106)
256 COG4798 Predicted methyltransf 92.9 0.18 4E-06 48.5 5.2 76 296-377 129-207 (238)
257 KOG1331 Predicted methyltransf 92.4 0.17 3.6E-06 50.9 4.5 108 167-330 29-139 (293)
258 PRK01747 mnmC bifunctional tRN 92.1 0.88 1.9E-05 50.1 10.1 71 277-373 148-225 (662)
259 cd00401 AdoHcyase S-adenosyl-L 92.0 1 2.2E-05 47.5 9.9 38 189-226 201-240 (413)
260 PRK09880 L-idonate 5-dehydroge 91.8 0.6 1.3E-05 46.5 7.8 40 189-228 169-211 (343)
261 cd08232 idonate-5-DH L-idonate 91.8 0.95 2.1E-05 44.4 9.0 37 189-225 165-204 (339)
262 cd08254 hydroxyacyl_CoA_DH 6-h 91.6 0.73 1.6E-05 44.7 7.9 39 189-227 165-205 (338)
263 TIGR00006 S-adenosyl-methyltra 91.3 3.6 7.9E-05 41.8 12.7 55 174-231 8-64 (305)
264 COG4262 Predicted spermidine s 90.8 1.8 3.9E-05 45.4 10.0 109 189-332 289-405 (508)
265 KOG4058 Uncharacterized conser 90.5 0.25 5.5E-06 45.8 3.3 41 189-229 72-113 (199)
266 cd05188 MDR Medium chain reduc 89.1 1.7 3.7E-05 40.2 7.8 37 189-225 134-172 (271)
267 TIGR00518 alaDH alanine dehydr 89.0 0.84 1.8E-05 47.1 6.1 36 189-224 166-203 (370)
268 TIGR00675 dcm DNA-methyltransf 88.9 8.6 0.00019 38.7 13.2 36 193-228 1-37 (315)
269 KOG1562 Spermidine synthase [A 88.6 1.3 2.9E-05 45.0 7.0 114 188-338 120-240 (337)
270 KOG1709 Guanidinoacetate methy 88.3 4.8 0.0001 39.6 10.3 115 173-332 89-204 (271)
271 cd08237 ribitol-5-phosphate_DH 88.0 2.1 4.6E-05 42.7 8.2 38 189-226 163-204 (341)
272 TIGR02822 adh_fam_2 zinc-bindi 88.0 2.9 6.4E-05 41.6 9.1 37 189-225 165-203 (329)
273 cd08230 glucose_DH Glucose deh 87.8 2.4 5.2E-05 42.4 8.4 31 189-219 172-204 (355)
274 PRK07417 arogenate dehydrogena 87.8 1.8 3.9E-05 42.4 7.4 34 192-225 2-37 (279)
275 COG0270 Dcm Site-specific DNA 87.7 7.3 0.00016 39.4 11.9 151 190-402 3-168 (328)
276 KOG2671 Putative RNA methylase 87.6 0.79 1.7E-05 47.5 4.8 54 170-225 191-244 (421)
277 PF01555 N6_N4_Mtase: DNA meth 87.4 1.6 3.4E-05 40.0 6.3 51 174-228 180-230 (231)
278 PRK10458 DNA cytosine methylas 87.3 46 0.001 35.8 18.1 40 189-228 87-127 (467)
279 PLN03154 putative allyl alcoho 86.6 2.2 4.7E-05 43.0 7.3 37 189-225 158-197 (348)
280 cd05278 FDH_like Formaldehyde 86.5 2.4 5.1E-05 41.6 7.4 38 189-226 167-207 (347)
281 PF07091 FmrO: Ribosomal RNA m 86.3 1.3 2.8E-05 43.9 5.3 82 143-231 66-149 (251)
282 TIGR03451 mycoS_dep_FDH mycoth 86.1 2.2 4.8E-05 42.7 7.1 39 189-227 176-217 (358)
283 cd08261 Zn_ADH7 Alcohol dehydr 86.1 2.9 6.4E-05 41.0 7.9 37 189-225 159-197 (337)
284 PTZ00357 methyltransferase; Pr 86.0 3.1 6.8E-05 46.8 8.5 108 191-329 702-830 (1072)
285 cd08245 CAD Cinnamyl alcohol d 86.0 3.8 8.3E-05 39.9 8.6 37 189-225 162-200 (330)
286 cd08285 NADP_ADH NADP(H)-depen 85.0 2.4 5.1E-05 42.1 6.6 40 189-228 166-208 (351)
287 KOG3201 Uncharacterized conser 84.9 1.7 3.7E-05 41.0 5.1 63 295-374 101-165 (201)
288 TIGR01202 bchC 2-desacetyl-2-h 84.8 3.4 7.4E-05 40.7 7.6 36 189-224 144-182 (308)
289 cd08295 double_bond_reductase_ 84.7 2.9 6.3E-05 41.3 7.1 36 189-224 151-189 (338)
290 PLN02494 adenosylhomocysteinas 84.7 3 6.6E-05 44.8 7.6 35 189-223 253-289 (477)
291 TIGR00936 ahcY adenosylhomocys 84.6 4 8.7E-05 43.0 8.4 36 189-224 194-231 (406)
292 cd08294 leukotriene_B4_DH_like 84.3 2 4.4E-05 41.6 5.8 36 189-224 143-181 (329)
293 PF02826 2-Hacid_dh_C: D-isome 84.2 2.5 5.3E-05 38.8 5.9 34 189-224 35-72 (178)
294 cd08293 PTGR2 Prostaglandin re 83.7 2.9 6.4E-05 41.1 6.6 34 191-224 156-193 (345)
295 cd08255 2-desacetyl-2-hydroxye 83.6 6.8 0.00015 37.1 8.9 37 189-225 97-136 (277)
296 PRK12480 D-lactate dehydrogena 83.1 4.4 9.5E-05 41.3 7.7 34 189-222 145-180 (330)
297 PF01189 Nol1_Nop2_Fmu: NOL1/N 83.1 5.7 0.00012 39.5 8.4 39 189-227 85-126 (283)
298 TIGR00561 pntA NAD(P) transhyd 83.0 4.2 9E-05 44.2 7.9 116 189-333 163-283 (511)
299 cd08234 threonine_DH_like L-th 82.6 6.2 0.00014 38.4 8.4 37 189-225 159-198 (334)
300 KOG2187 tRNA uracil-5-methyltr 82.3 1.3 2.7E-05 48.0 3.6 39 190-228 384-422 (534)
301 TIGR00027 mthyl_TIGR00027 meth 81.9 21 0.00046 35.1 11.8 145 191-373 83-248 (260)
302 COG5459 Predicted rRNA methyla 81.5 3.5 7.6E-05 43.1 6.3 23 311-333 202-224 (484)
303 COG0604 Qor NADPH:quinone redu 81.4 7.5 0.00016 39.4 8.7 99 189-336 142-243 (326)
304 cd08286 FDH_like_ADH2 formalde 81.3 5.1 0.00011 39.4 7.3 34 296-335 234-267 (345)
305 KOG1501 Arginine N-methyltrans 81.2 2.7 5.7E-05 45.1 5.4 44 189-232 66-110 (636)
306 PTZ00075 Adenosylhomocysteinas 81.2 6.9 0.00015 42.2 8.6 35 189-223 253-289 (476)
307 cd08236 sugar_DH NAD(P)-depend 81.1 6.4 0.00014 38.7 7.9 37 189-225 159-198 (343)
308 PRK11559 garR tartronate semia 80.9 13 0.00028 36.4 9.9 33 192-224 4-38 (296)
309 cd05285 sorbitol_DH Sorbitol d 80.8 9.4 0.0002 37.7 9.0 37 189-225 162-201 (343)
310 KOG2872 Uroporphyrinogen decar 80.6 5.1 0.00011 40.8 6.9 76 152-228 209-289 (359)
311 PF00107 ADH_zinc_N: Zinc-bind 80.5 1.2 2.7E-05 37.5 2.3 89 199-335 1-90 (130)
312 cd08281 liver_ADH_like1 Zinc-d 80.2 5 0.00011 40.5 6.9 40 189-228 191-233 (371)
313 TIGR00872 gnd_rel 6-phosphoglu 80.1 22 0.00047 35.3 11.3 33 192-224 2-36 (298)
314 TIGR02825 B4_12hDH leukotriene 80.0 6.3 0.00014 38.6 7.4 37 189-225 138-177 (325)
315 PRK13699 putative methylase; P 79.7 6 0.00013 38.1 7.0 40 189-228 163-202 (227)
316 PF03141 Methyltransf_29: Puta 79.6 2.6 5.7E-05 45.5 4.8 71 284-374 416-490 (506)
317 cd01080 NAD_bind_m-THF_DH_Cycl 79.4 3.8 8.1E-05 37.9 5.3 45 174-221 31-78 (168)
318 cd08233 butanediol_DH_like (2R 79.4 4.5 9.9E-05 40.1 6.3 38 189-226 172-212 (351)
319 COG3897 Predicted methyltransf 79.4 8.5 0.00018 37.3 7.7 39 189-227 79-118 (218)
320 PRK05476 S-adenosyl-L-homocyst 79.2 7.6 0.00016 41.2 8.1 36 189-224 211-248 (425)
321 PRK11064 wecC UDP-N-acetyl-D-m 79.0 11 0.00025 39.4 9.3 35 191-225 4-40 (415)
322 TIGR03366 HpnZ_proposed putati 78.3 5.5 0.00012 38.5 6.3 39 189-227 120-161 (280)
323 PLN02712 arogenate dehydrogena 77.7 12 0.00025 42.0 9.4 34 189-222 51-86 (667)
324 PRK15469 ghrA bifunctional gly 77.7 3.9 8.5E-05 41.3 5.3 33 189-221 135-169 (312)
325 PF03446 NAD_binding_2: NAD bi 77.5 8 0.00017 34.8 6.7 60 297-373 57-118 (163)
326 PF02005 TRM: N2,N2-dimethylgu 77.5 5.9 0.00013 41.3 6.6 98 189-331 49-151 (377)
327 TIGR00692 tdh L-threonine 3-de 77.5 10 0.00022 37.4 8.1 35 296-336 229-263 (340)
328 cd08263 Zn_ADH10 Alcohol dehyd 77.3 5.4 0.00012 40.0 6.1 37 189-225 187-226 (367)
329 PRK11524 putative methyltransf 77.3 12 0.00026 37.0 8.5 55 174-232 197-251 (284)
330 cd08239 THR_DH_like L-threonin 77.3 8.8 0.00019 37.8 7.5 37 189-225 163-202 (339)
331 KOG2920 Predicted methyltransf 77.1 2.3 5E-05 42.8 3.3 55 170-224 97-152 (282)
332 PF03269 DUF268: Caenorhabditi 76.9 2.7 5.8E-05 39.5 3.4 53 280-335 48-112 (177)
333 PF01861 DUF43: Protein of unk 76.5 84 0.0018 31.2 14.3 131 189-372 44-175 (243)
334 PF11312 DUF3115: Protein of u 76.3 9.1 0.0002 39.2 7.3 145 167-332 54-240 (315)
335 KOG3115 Methyltransferase-like 76.0 1.7 3.7E-05 42.2 2.0 41 189-232 60-102 (249)
336 PF01795 Methyltransf_5: MraW 76.0 11 0.00024 38.4 8.0 40 189-228 20-61 (310)
337 KOG2651 rRNA adenine N-6-methy 75.4 9.1 0.0002 40.5 7.2 41 190-230 154-195 (476)
338 COG4627 Uncharacterized protei 75.3 1.4 3E-05 41.2 1.2 43 293-335 43-87 (185)
339 cd08235 iditol_2_DH_like L-idi 74.5 8.9 0.00019 37.5 6.7 37 189-225 165-204 (343)
340 COG1233 Phytoene dehydrogenase 74.5 3.5 7.6E-05 43.9 4.1 29 190-218 3-33 (487)
341 PF02086 MethyltransfD12: D12 73.6 5.3 0.00011 38.0 4.7 55 174-231 8-62 (260)
342 PRK10309 galactitol-1-phosphat 72.9 16 0.00034 36.3 8.1 38 189-226 160-200 (347)
343 PRK06436 glycerate dehydrogena 72.7 7.5 0.00016 39.2 5.8 32 189-220 121-154 (303)
344 cd08279 Zn_ADH_class_III Class 72.6 12 0.00027 37.4 7.3 37 189-225 182-221 (363)
345 PRK12939 short chain dehydroge 72.3 31 0.00066 31.9 9.5 36 189-224 6-44 (250)
346 PRK07502 cyclohexadienyl dehyd 72.3 16 0.00035 36.2 8.0 34 191-224 7-44 (307)
347 PF01494 FAD_binding_3: FAD bi 71.8 3.6 7.9E-05 39.7 3.2 30 192-221 3-34 (356)
348 PTZ00354 alcohol dehydrogenase 71.8 15 0.00033 35.4 7.6 37 189-225 140-179 (334)
349 cd05283 CAD1 Cinnamyl alcohol 71.6 17 0.00036 35.9 7.9 37 189-225 169-207 (337)
350 cd08242 MDR_like Medium chain 71.4 21 0.00046 34.6 8.5 39 189-227 155-195 (319)
351 TIGR01470 cysG_Nterm siroheme 71.3 23 0.00049 33.6 8.4 31 189-219 8-40 (205)
352 PF04989 CmcI: Cephalosporin h 71.3 19 0.00042 34.7 7.9 146 170-372 23-187 (206)
353 PRK09599 6-phosphogluconate de 71.2 55 0.0012 32.4 11.5 33 192-224 2-36 (301)
354 cd08274 MDR9 Medium chain dehy 71.0 31 0.00067 33.8 9.6 33 189-221 177-212 (350)
355 PF01555 N6_N4_Mtase: DNA meth 71.0 12 0.00027 34.0 6.4 73 313-402 35-112 (231)
356 KOG1596 Fibrillarin and relate 70.9 11 0.00023 37.8 6.2 34 188-221 155-191 (317)
357 KOG1201 Hydroxysteroid 17-beta 70.8 7.8 0.00017 39.4 5.3 51 174-224 21-75 (300)
358 PRK11199 tyrA bifunctional cho 70.7 25 0.00054 36.4 9.2 78 142-221 44-132 (374)
359 PLN02586 probable cinnamyl alc 70.6 17 0.00037 36.7 7.9 35 189-223 183-219 (360)
360 cd08278 benzyl_alcohol_DH Benz 70.4 16 0.00034 36.8 7.6 40 189-228 186-228 (365)
361 PRK12475 thiamine/molybdopteri 70.3 5.1 0.00011 41.0 4.0 33 189-221 23-58 (338)
362 PRK10083 putative oxidoreducta 70.2 23 0.0005 34.7 8.5 38 189-226 160-201 (339)
363 PRK13243 glyoxylate reductase; 69.9 11 0.00024 38.3 6.3 33 189-221 149-183 (333)
364 TIGR02733 desat_CrtD C-3',4' d 69.4 4.4 9.5E-05 42.7 3.4 31 191-221 2-34 (492)
365 cd08243 quinone_oxidoreductase 69.3 21 0.00045 34.0 7.8 36 189-224 142-180 (320)
366 cd05286 QOR2 Quinone oxidoredu 69.3 29 0.00064 32.6 8.7 37 189-225 136-175 (320)
367 PLN02256 arogenate dehydrogena 69.2 26 0.00056 35.3 8.7 33 189-221 35-69 (304)
368 PRK12490 6-phosphogluconate de 68.8 60 0.0013 32.2 11.1 33 192-224 2-36 (299)
369 TIGR02356 adenyl_thiF thiazole 68.6 5.5 0.00012 37.5 3.6 33 189-221 20-55 (202)
370 cd08270 MDR4 Medium chain dehy 68.6 30 0.00064 33.0 8.7 36 189-224 132-170 (305)
371 PRK15057 UDP-glucose 6-dehydro 67.9 20 0.00043 37.4 7.9 33 192-225 2-36 (388)
372 COG1063 Tdh Threonine dehydrog 67.9 18 0.0004 36.8 7.4 40 190-229 169-211 (350)
373 PRK07574 formate dehydrogenase 67.5 15 0.00032 38.5 6.8 33 189-221 191-225 (385)
374 PLN03209 translocon at the inn 67.5 23 0.0005 39.2 8.5 36 189-224 79-117 (576)
375 cd08289 MDR_yhfp_like Yhfp put 67.3 21 0.00045 34.6 7.4 35 190-224 147-184 (326)
376 PRK07233 hypothetical protein; 67.3 4.6 0.0001 40.9 3.0 30 192-221 1-32 (434)
377 PRK08229 2-dehydropantoate 2-r 67.2 50 0.0011 32.9 10.3 31 191-221 3-35 (341)
378 cd08231 MDR_TM0436_like Hypoth 66.8 26 0.00056 34.9 8.1 37 189-225 177-216 (361)
379 PRK08507 prephenate dehydrogen 66.6 29 0.00063 33.8 8.3 33 192-224 2-38 (275)
380 PRK07688 thiamine/molybdopteri 66.5 6.9 0.00015 40.1 4.1 33 189-221 23-58 (339)
381 PRK08655 prephenate dehydrogen 66.3 22 0.00047 37.6 7.8 33 192-224 2-37 (437)
382 cd08267 MDR1 Medium chain dehy 65.9 33 0.00071 32.7 8.4 32 189-220 143-177 (319)
383 PF06962 rRNA_methylase: Putat 65.8 33 0.00072 31.1 7.8 114 213-374 1-124 (140)
384 PLN02827 Alcohol dehydrogenase 65.5 23 0.0005 36.1 7.6 39 189-227 193-234 (378)
385 PHA01634 hypothetical protein 65.4 9.6 0.00021 34.7 4.2 38 189-226 28-66 (156)
386 PRK06567 putative bifunctional 65.2 6.2 0.00013 46.2 3.7 31 189-219 382-414 (1028)
387 COG0287 TyrA Prephenate dehydr 64.9 25 0.00053 35.3 7.5 37 190-226 3-43 (279)
388 cd05289 MDR_like_2 alcohol deh 64.3 37 0.00079 31.9 8.3 33 189-221 144-179 (309)
389 cd08266 Zn_ADH_like1 Alcohol d 64.1 25 0.00055 33.6 7.3 36 189-224 166-204 (342)
390 cd08265 Zn_ADH3 Alcohol dehydr 63.0 27 0.00059 35.4 7.6 35 296-335 274-308 (384)
391 PRK08324 short chain dehydroge 63.0 70 0.0015 35.6 11.4 36 189-224 421-459 (681)
392 PRK05396 tdh L-threonine 3-deh 62.3 34 0.00074 33.6 8.0 37 189-225 163-202 (341)
393 KOG2539 Mitochondrial/chloropl 62.2 20 0.00043 38.7 6.6 62 170-231 181-246 (491)
394 cd08260 Zn_ADH6 Alcohol dehydr 61.8 22 0.00048 34.9 6.6 36 189-224 165-202 (345)
395 PRK06475 salicylate hydroxylas 61.5 7.2 0.00016 39.8 3.1 31 191-221 3-35 (400)
396 KOG0024 Sorbitol dehydrogenase 61.5 25 0.00054 36.5 6.9 42 188-229 168-212 (354)
397 PF05971 Methyltransf_10: Prot 61.4 26 0.00055 35.7 6.9 43 190-232 103-147 (299)
398 PF01210 NAD_Gly3P_dh_N: NAD-d 61.4 36 0.00078 30.5 7.3 100 192-333 1-102 (157)
399 PRK06249 2-dehydropantoate 2-r 61.4 56 0.0012 32.5 9.4 33 189-221 4-38 (313)
400 PRK07236 hypothetical protein; 61.4 8 0.00017 39.2 3.4 33 189-221 5-39 (386)
401 cd05281 TDH Threonine dehydrog 61.3 38 0.00083 33.3 8.2 34 296-335 230-263 (341)
402 COG0286 HsdM Type I restrictio 61.2 15 0.00033 39.5 5.7 79 147-228 145-231 (489)
403 TIGR02734 crtI_fam phytoene de 61.2 5.8 0.00013 41.8 2.5 29 193-221 1-31 (502)
404 COG0275 Predicted S-adenosylme 61.2 69 0.0015 32.9 9.9 55 174-231 11-68 (314)
405 PLN02985 squalene monooxygenas 61.1 11 0.00023 40.7 4.5 67 150-220 7-75 (514)
406 PRK08306 dipicolinate synthase 61.1 70 0.0015 32.0 10.0 35 189-223 151-187 (296)
407 TIGR01988 Ubi-OHases Ubiquinon 60.3 7.4 0.00016 38.7 2.9 29 193-221 2-32 (385)
408 COG2384 Predicted SAM-dependen 60.2 1.8E+02 0.0039 28.6 13.8 124 190-374 17-142 (226)
409 TIGR02032 GG-red-SF geranylger 59.6 8.9 0.00019 36.3 3.2 30 192-221 2-33 (295)
410 PLN03139 formate dehydrogenase 59.4 27 0.00058 36.6 6.9 35 297-333 255-290 (386)
411 KOG1610 Corticosteroid 11-beta 59.1 94 0.002 32.1 10.5 29 189-217 28-60 (322)
412 cd08292 ETR_like_2 2-enoyl thi 59.1 18 0.00039 34.8 5.3 36 189-224 139-177 (324)
413 PF01266 DAO: FAD dependent ox 59.0 8.9 0.00019 37.0 3.2 29 193-221 2-32 (358)
414 PRK08163 salicylate hydroxylas 58.9 9.7 0.00021 38.4 3.5 32 190-221 4-37 (396)
415 COG1867 TRM1 N2,N2-dimethylgua 58.7 35 0.00075 35.9 7.5 95 190-331 53-151 (380)
416 PRK12409 D-amino acid dehydrog 58.4 9.1 0.0002 39.0 3.3 29 192-220 3-33 (410)
417 COG3349 Uncharacterized conser 58.4 9.1 0.0002 41.4 3.3 29 191-219 1-31 (485)
418 PLN02927 antheraxanthin epoxid 58.2 9.2 0.0002 42.9 3.5 33 188-220 79-113 (668)
419 cd08269 Zn_ADH9 Alcohol dehydr 57.9 50 0.0011 31.5 8.1 35 296-336 197-231 (312)
420 PRK07364 2-octaprenyl-6-methox 57.8 9.5 0.00021 38.7 3.3 34 189-222 17-52 (415)
421 TIGR02730 carot_isom carotene 57.4 8.7 0.00019 40.6 3.0 30 192-221 2-33 (493)
422 PRK06753 hypothetical protein; 57.3 10 0.00022 38.0 3.3 30 192-221 2-33 (373)
423 TIGR02824 quinone_pig3 putativ 57.0 59 0.0013 30.8 8.4 36 189-224 139-177 (325)
424 cd08297 CAD3 Cinnamyl alcohol 57.0 43 0.00093 32.8 7.6 36 189-224 165-203 (341)
425 PF13450 NAD_binding_8: NAD(P) 56.6 10 0.00022 29.5 2.6 27 195-221 1-29 (68)
426 PF02737 3HCDH_N: 3-hydroxyacy 56.2 19 0.0004 33.4 4.6 37 192-228 1-39 (180)
427 PRK07538 hypothetical protein; 56.2 10 0.00022 38.9 3.2 30 192-221 2-33 (413)
428 PLN02688 pyrroline-5-carboxyla 56.0 76 0.0016 30.5 9.0 34 297-333 61-94 (266)
429 PRK07588 hypothetical protein; 55.2 11 0.00024 38.2 3.2 29 192-220 2-32 (391)
430 PRK05562 precorrin-2 dehydroge 55.0 67 0.0015 31.3 8.4 46 179-224 14-63 (223)
431 PRK09126 hypothetical protein; 55.0 10 0.00022 38.2 2.9 31 191-221 4-36 (392)
432 TIGR03026 NDP-sugDHase nucleot 54.9 86 0.0019 32.6 9.8 33 192-224 2-36 (411)
433 PLN02178 cinnamyl-alcohol dehy 54.8 46 0.001 34.0 7.7 34 189-222 178-213 (375)
434 PRK07231 fabG 3-ketoacyl-(acyl 54.8 18 0.0004 33.4 4.4 35 189-223 4-41 (251)
435 PRK09072 short chain dehydroge 54.5 1.9E+02 0.0041 27.2 11.4 35 190-224 5-42 (263)
436 PLN02712 arogenate dehydrogena 54.2 49 0.0011 37.1 8.3 34 189-222 368-403 (667)
437 TIGR02360 pbenz_hydroxyl 4-hyd 54.1 12 0.00026 38.3 3.3 31 191-221 3-35 (390)
438 PLN02989 cinnamyl-alcohol dehy 53.7 31 0.00067 33.7 6.0 32 189-221 4-39 (325)
439 cd08298 CAD2 Cinnamyl alcohol 53.5 73 0.0016 30.9 8.5 34 296-335 224-257 (329)
440 PF08729 HUN: HPC2 and ubinucl 53.4 12 0.00025 28.6 2.3 31 306-337 24-54 (55)
441 PF11599 AviRa: RRNA methyltra 53.2 34 0.00073 33.8 5.9 44 189-232 51-98 (246)
442 PF02636 Methyltransf_28: Puta 53.2 17 0.00038 35.0 4.1 51 174-228 6-67 (252)
443 PRK07045 putative monooxygenas 53.1 12 0.00026 37.8 3.1 32 190-221 5-38 (388)
444 cd00757 ThiF_MoeB_HesA_family 53.1 15 0.00032 35.1 3.5 33 189-221 20-55 (228)
445 PRK05868 hypothetical protein; 53.0 12 0.00026 38.0 3.1 30 192-221 3-34 (372)
446 PRK04176 ribulose-1,5-biphosph 53.0 21 0.00044 35.0 4.6 31 191-221 26-58 (257)
447 PLN02514 cinnamyl-alcohol dehy 52.8 56 0.0012 32.8 7.8 36 189-224 180-217 (357)
448 PF03721 UDPG_MGDP_dh_N: UDP-g 52.4 31 0.00066 32.2 5.5 34 192-225 2-37 (185)
449 cd05288 PGDH Prostaglandin deh 52.4 46 0.00099 32.2 6.9 36 189-224 145-183 (329)
450 PRK08849 2-octaprenyl-3-methyl 52.3 12 0.00026 38.0 3.0 30 191-220 4-35 (384)
451 cd08250 Mgc45594_like Mgc45594 51.8 36 0.00077 33.0 6.1 37 189-225 139-178 (329)
452 KOG2614 Kynurenine 3-monooxyge 51.8 14 0.0003 39.2 3.4 32 191-222 3-36 (420)
453 KOG2793 Putative N2,N2-dimethy 51.7 1E+02 0.0022 30.7 9.1 37 189-225 86-123 (248)
454 cd01483 E1_enzyme_family Super 51.6 15 0.00032 32.1 3.0 30 192-221 1-33 (143)
455 PRK12771 putative glutamate sy 51.6 19 0.0004 39.0 4.4 33 188-220 135-169 (564)
456 TIGR03219 salicylate_mono sali 51.4 13 0.00029 38.0 3.1 30 192-221 2-34 (414)
457 PRK06847 hypothetical protein; 51.3 16 0.00034 36.5 3.6 32 190-221 4-37 (375)
458 PRK10754 quinone oxidoreductas 51.2 47 0.001 32.2 6.8 37 189-225 140-179 (327)
459 PRK05714 2-octaprenyl-3-methyl 51.0 12 0.00025 38.1 2.7 30 192-221 4-35 (405)
460 PRK06126 hypothetical protein; 50.4 15 0.00032 39.3 3.4 31 190-220 7-39 (545)
461 PRK08243 4-hydroxybenzoate 3-m 50.3 15 0.00032 37.4 3.3 31 191-221 3-35 (392)
462 cd05280 MDR_yhdh_yhfp Yhdh and 50.3 93 0.002 29.8 8.7 36 190-225 147-185 (325)
463 PRK00421 murC UDP-N-acetylmura 50.2 18 0.00039 38.0 4.0 33 189-221 6-41 (461)
464 PRK05690 molybdopterin biosynt 50.0 21 0.00045 34.8 4.1 33 189-221 31-66 (245)
465 KOG1209 1-Acyl dihydroxyaceton 49.7 19 0.00042 35.6 3.7 34 189-222 6-43 (289)
466 PRK08013 oxidoreductase; Provi 49.7 15 0.00033 37.5 3.3 31 191-221 4-36 (400)
467 PRK06184 hypothetical protein; 49.6 16 0.00035 38.7 3.5 30 191-220 4-35 (502)
468 PRK08773 2-octaprenyl-3-methyl 49.6 16 0.00035 37.0 3.4 32 189-220 5-38 (392)
469 cd05282 ETR_like 2-enoyl thioe 49.5 49 0.0011 31.7 6.6 36 189-224 138-176 (323)
470 PRK08850 2-octaprenyl-6-methox 49.4 15 0.00033 37.5 3.2 30 191-220 5-36 (405)
471 PRK12769 putative oxidoreducta 49.4 17 0.00036 40.2 3.7 33 189-221 326-360 (654)
472 cd01487 E1_ThiF_like E1_ThiF_l 48.9 17 0.00037 33.5 3.1 30 192-221 1-33 (174)
473 PRK12831 putative oxidoreducta 48.9 19 0.0004 38.2 3.8 32 189-220 139-172 (464)
474 TIGR01984 UbiH 2-polyprenyl-6- 48.8 14 0.0003 37.0 2.8 30 193-222 2-34 (382)
475 KOG1122 tRNA and rRNA cytosine 48.7 1.1E+02 0.0024 32.9 9.3 39 187-225 239-280 (460)
476 PTZ00142 6-phosphogluconate de 48.6 1.1E+02 0.0023 33.1 9.4 34 192-225 3-38 (470)
477 TIGR02819 fdhA_non_GSH formald 48.4 64 0.0014 33.3 7.6 39 189-227 185-226 (393)
478 TIGR02823 oxido_YhdH putative 48.4 1.2E+02 0.0027 29.2 9.2 35 189-223 144-182 (323)
479 cd05284 arabinose_DH_like D-ar 48.3 1.2E+02 0.0025 29.7 9.1 36 189-224 167-205 (340)
480 PLN02487 zeta-carotene desatur 48.3 28 0.00061 38.2 5.2 61 147-221 43-108 (569)
481 PRK06129 3-hydroxyacyl-CoA deh 48.1 26 0.00056 34.9 4.5 34 192-225 4-39 (308)
482 PRK13581 D-3-phosphoglycerate 48.1 41 0.0009 36.4 6.4 32 189-220 139-172 (526)
483 PRK12767 carbamoyl phosphate s 47.6 23 0.0005 34.9 4.1 32 191-222 2-36 (326)
484 PRK07208 hypothetical protein; 47.4 17 0.00038 37.8 3.3 32 190-221 4-37 (479)
485 PRK12779 putative bifunctional 47.3 18 0.00039 42.1 3.7 32 189-220 305-338 (944)
486 cd05279 Zn_ADH1 Liver alcohol 47.3 56 0.0012 32.8 6.9 38 189-226 183-223 (365)
487 PRK09260 3-hydroxybutyryl-CoA 47.3 29 0.00062 34.1 4.7 36 192-227 3-40 (288)
488 TIGR03201 dearomat_had 6-hydro 47.2 32 0.0007 34.2 5.1 40 189-228 166-207 (349)
489 PRK12778 putative bifunctional 47.2 23 0.0005 39.8 4.4 31 189-219 430-462 (752)
490 PRK05732 2-octaprenyl-6-methox 46.9 18 0.00039 36.3 3.2 29 191-219 4-37 (395)
491 PRK06849 hypothetical protein; 46.8 27 0.00059 35.7 4.6 36 189-224 3-41 (389)
492 PF00890 FAD_binding_2: FAD bi 46.8 17 0.00036 37.1 3.0 30 193-222 2-33 (417)
493 TIGR02354 thiF_fam2 thiamine b 46.4 29 0.00062 32.8 4.3 32 189-220 20-54 (200)
494 cd08256 Zn_ADH2 Alcohol dehydr 46.3 44 0.00096 33.0 5.8 36 189-224 174-212 (350)
495 cd08268 MDR2 Medium chain dehy 46.3 63 0.0014 30.6 6.7 36 189-224 144-182 (328)
496 PLN02668 indole-3-acetate carb 46.0 27 0.00058 36.8 4.4 25 351-375 284-309 (386)
497 PRK07494 2-octaprenyl-6-methox 45.6 19 0.0004 36.3 3.1 32 190-221 7-40 (388)
498 PRK12829 short chain dehydroge 45.5 33 0.00072 32.0 4.6 36 189-224 10-48 (264)
499 TIGR01377 soxA_mon sarcosine o 45.5 19 0.00041 36.0 3.1 28 192-219 2-31 (380)
500 COG2910 Putative NADH-flavin r 45.5 55 0.0012 31.6 6.0 51 278-328 43-96 (211)
No 1
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=100.00 E-value=1.1e-82 Score=620.28 Aligned_cols=260 Identities=55% Similarity=0.978 Sum_probs=243.5
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (412)
..|++||+++|+|++||||+||+.||+++|+||+++|++++|. ...+.+.+|||||||+||||+|||++||.|+|||+|
T Consensus 8 ~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S 87 (270)
T PF07942_consen 8 PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFS 87 (270)
T ss_pred hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEch
Confidence 7999999999999999999999999999999999999999984 334578999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC-CCCCCceeEEecccccccCCCCCCCCcc
Q 015160 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299 (412)
Q Consensus 221 ~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~-~~~~~~~s~~~GDF~ely~~~~~~~~fD 299 (412)
++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. .....+|+|++|||+++|..+...++||
T Consensus 88 ~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d 167 (270)
T PF07942_consen 88 YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFD 167 (270)
T ss_pred HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCccc
Confidence 999999999999999999999999999999999999999999999999976 4566789999999999998544468999
Q ss_pred EEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee-ccc
Q 015160 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT-IET 378 (412)
Q Consensus 300 ~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~-i~s 378 (412)
+||||||||||+||++||++|+++|||||+|||+|||+|||++. +..++.++|||+|||+++++++||++++++. +.+
T Consensus 168 ~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~-~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~ 246 (270)
T PF07942_consen 168 VVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM-SIPNEMSVELSLEEIKELIEKLGFEIEKEESSILS 246 (270)
T ss_pred EEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999874 2234568999999999999999999999875 999
Q ss_pred cCCCCcccccccccceEEEEEEEc
Q 015160 379 TYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 379 ~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
+|++|++||+|+.|+|+||||||+
T Consensus 247 ~Y~~d~~Sm~q~~Y~~~~fvark~ 270 (270)
T PF07942_consen 247 GYTTDPESMMQTYYGCVFFVARKP 270 (270)
T ss_pred CCCCCHHHHhhCccccEEEEEEcC
Confidence 999999999999999999999996
No 2
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-81 Score=613.91 Aligned_cols=295 Identities=57% Similarity=0.965 Sum_probs=270.6
Q ss_pred cccchhHHhhhccccccccCCCCCCCCCCCCCC-cCCCCCCcchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhh
Q 015160 103 LENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 181 (412)
Q Consensus 103 ~~~n~~~~~~~~~~~~~~~g~~~~~~~~w~~~~-~~~~~~~~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~ 181 (412)
|+-|..+...++.... +.-.+|..-+ ...++.+.+|.||.|+|+|++||||+||..||+++|.||+++|..+
T Consensus 69 I~~N~~v~r~Ia~~~~-------~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~l 141 (369)
T KOG2798|consen 69 IEENSRVIRAIAEECP-------FEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNSL 141 (369)
T ss_pred HHhhhHHHHHHHhhCc-------cccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHhh
Confidence 7788888887777222 2233455555 6677888999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 182 FPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 182 ~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
+|... .+.+.+||+||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++||+|
T Consensus 142 fp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlr 221 (369)
T KOG2798|consen 142 FPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLR 221 (369)
T ss_pred CCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccc
Confidence 98643 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCC-CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 261 PVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 261 ~v~iPDv~p~-~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
+++|||+.|. .....+.|+|++|||+++|..+...+.||+||||||||||+|+++||++|+++|||||+|||+|||+||
T Consensus 222 pi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH 301 (369)
T KOG2798|consen 222 PISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH 301 (369)
T ss_pred cccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceeee
Confidence 9999999997 456667899999999999987666778999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
|++..|..+++++|||.|+|.++++..||++++++.|+++|+.||+||++..|.|.|||+||+..
T Consensus 302 F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~yw~~rk~~~ 366 (369)
T KOG2798|consen 302 FEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHYWVLRKPCA 366 (369)
T ss_pred ccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhcccceeEEEecccc
Confidence 99987766788999999999999999999999999999999999999999999999999999864
No 3
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.71 E-value=1.1e-16 Score=148.91 Aligned_cols=137 Identities=19% Similarity=0.212 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4568999999999999999999999999999999997766332110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.++.+..+|+.++.. .++||+|++.+.+. ...++..+++.++++|||||++|-+..+ ...+. ..
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~~ 143 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-PC 143 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-CC
Confidence 124566678766422 36799999775332 2346889999999999999997542211 11110 00
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.....+.++.+|+.++++ ||+++.-
T Consensus 144 ~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 144 TVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 111246789999999996 9999884
No 4
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.68 E-value=3.5e-16 Score=149.04 Aligned_cols=151 Identities=22% Similarity=0.301 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||.|..+..||.+||+|+|+|+|...+..+. -.+. +.|=+. . .....
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~-------~~~~~~------~----~~~~~----- 92 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENN-------LEPTVT------S----VGGFK----- 92 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCT-------TEEECT------T----CTTEE-----
T ss_pred CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhc-------cCCCcc------c----cccee-----
Confidence 4569999999999999999999999999999998875431 1000 000000 0 00000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.....++.+.+|||+++.. ...++||+|.-+ ||+-. .....+|.+.+.++|||||.++-+. +.|..... .+
T Consensus 93 ---~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~-l~~~~~~~-~G 165 (218)
T PF05724_consen 93 ---RYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT-LEYPQGEM-EG 165 (218)
T ss_dssp ---EETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE-EES-CSCS-SS
T ss_pred ---eecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE-EEcCCcCC-CC
Confidence 0112458999999999764 234689999965 33322 3447799999999999999954321 33432222 12
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ ++.++.+||++++. .+|+++...
T Consensus 166 P---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 166 P---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp S---S----HHHHHHHHT-TTEEEEEEE
T ss_pred c---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 2 57899999999997 699998854
No 5
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.67 E-value=5.1e-16 Score=135.67 Aligned_cols=133 Identities=21% Similarity=0.278 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||.|.++..|++.|+.|+|+|+|..|+.. .+ +.
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~-----------------------------~~----- 63 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RN-----------------------------VV----- 63 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TT-----------------------------SE-----
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hh-----------------------------hh-----
Confidence 67799999999999999999999999999999999743 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh-----hhhc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH-----FADL 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-----~~~~ 343 (412)
....... +... ..++||+|+++..|...+|...+|+.|+++|||||+++-.-|..+. +...
T Consensus 64 ---------~~~~~~~--~~~~---~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 129 (161)
T PF13489_consen 64 ---------FDNFDAQ--DPPF---PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW 129 (161)
T ss_dssp ---------EEEEECH--THHC---HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC
T ss_pred ---------hhhhhhh--hhhc---cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc
Confidence 1111111 1111 2579999999988888889999999999999999999975554321 1110
Q ss_pred cCCCC--CcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 344 YGQED--EMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 344 ~g~~~--~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
....+ .....++.++++.+++++||++++|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 130 RYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp CGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred CCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 00010 1234689999999999999999875
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.67 E-value=2.9e-15 Score=143.87 Aligned_cols=134 Identities=14% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..|+ +
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~-------~------------------------------ 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAAR-------E------------------------------ 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHH-------h------------------------------
Confidence 5679999999999999999998 789999999999986543 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc-----chh--
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL-----lyh-- 339 (412)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-..|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788877632 478999999887766667889999999999999999742111 110
Q ss_pred --------hhhccCCCC--CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 340 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 340 --------~~~~~g~~~--~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|.......+ ......+.+++..+++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.67 E-value=7.3e-15 Score=142.68 Aligned_cols=194 Identities=17% Similarity=0.115 Sum_probs=122.9
Q ss_pred CCCCcchHHHHHHHHHHHhcCcccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--
Q 015160 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-- 211 (412)
Q Consensus 139 ~~~~~d~~kv~s~L~q~~RDWS~eG~~ER~~----~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-- 211 (412)
+....|+-++.+.++.+...++.....-.+. ....|-..+.+.... .++.+|||+|||+|+++..|+++ |
T Consensus 22 ~~~~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~ 98 (261)
T PLN02233 22 RSRRRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSD 98 (261)
T ss_pred hhhcCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCC
Confidence 3445777666666665555555433321111 112233333333321 25679999999999999999986 4
Q ss_pred CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC
Q 015160 212 FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD 291 (412)
Q Consensus 212 f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~ 291 (412)
..|+|+|+|..||..|+-..+.... ....++.++.+|+.++.
T Consensus 99 ~~V~gvD~S~~ml~~A~~r~~~~~~------------------------------------~~~~~i~~~~~d~~~lp-- 140 (261)
T PLN02233 99 GKVMGLDFSSEQLAVAASRQELKAK------------------------------------SCYKNIEWIEGDATDLP-- 140 (261)
T ss_pred CEEEEEECCHHHHHHHHHHhhhhhh------------------------------------ccCCCeEEEEcccccCC--
Confidence 3899999999999766511100000 00124788999988763
Q ss_pred CCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecC-------cchhhhhc---------cCCCCC----
Q 015160 292 PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGP-------LLYHFADL---------YGQEDE---- 349 (412)
Q Consensus 292 ~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GP-------Llyh~~~~---------~g~~~~---- 349 (412)
..+++||+|++.+-+...+|...++++++++|||||.++- +++ .++.+... ++..+.
T Consensus 141 -~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l 219 (261)
T PLN02233 141 -FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYL 219 (261)
T ss_pred -CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHH
Confidence 3467999999888777777899999999999999999864 221 11111000 011000
Q ss_pred ---cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 350 ---MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 350 ---~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..-.++.+|+.++++++||+.++..
T Consensus 220 ~~s~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 220 KSSINEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHHHHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124699999999999999988754
No 8
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.66 E-value=2.9e-15 Score=142.49 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=105.6
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
...+.+.+++.+... .++.+|||||||.||.+..||++|+.|+|+|+|..++..+. .. +... +
T Consensus 21 ~p~~~L~~~~~~~~~----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~-----~~l~--~---- 83 (218)
T PRK13255 21 EVNPLLQKYWPALAL----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AE-----NGLT--P---- 83 (218)
T ss_pred CCCHHHHHHHHhhCC----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HH-----cCCC--c----
Confidence 345566666655322 14569999999999999999999999999999999885321 11 0000 0
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCC-hhhHHHHHHHHHHhccC
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDT-AHNIVEYIEIISRILKD 326 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDt-a~Ni~~yl~~I~~~LKP 326 (412)
...+..........++.+.++|+.++.. ...+.||+|+-. +|+.. .+...+|++.|.++|||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 0000000000112358899999998743 223689999854 23333 33467899999999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
||+++-++ +.|. .+..+++ ++.++.+||++++.. +|+|+....
T Consensus 148 gG~~~l~~-~~~~-~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 148 GCRGLLVT-LDYP-QEELAGP---PFSVSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCeEEEEE-EEeC-CccCCCC---CCCCCHHHHHHHhcC-CceEEEeee
Confidence 98654211 1111 1112223 367999999999953 488887553
No 9
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.66 E-value=3.7e-15 Score=141.33 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=97.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||.||.+..||++|+.|+|+|+|..++..+. +. +... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~----~~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AE----NGLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HH----cCCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999986432 10 0000 000000 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh-hHHHHHHHHHHhccCCcEEEEecCcchhhhh-ccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH-NIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~-Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~-~~g 345 (412)
+.....++.+.++||.++.. ...+.||+|+-+- |+...+ ....|++.|.++|||||+++-++ +.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~---~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT---LDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE---EEcCCCCCC
Confidence 00012348899999998643 1236799998653 333333 35679999999999999765321 11111 112
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++ .+.++.+||++++.. +|+++...
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 467999999999964 67777644
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=4.7e-15 Score=143.26 Aligned_cols=178 Identities=21% Similarity=0.233 Sum_probs=125.0
Q ss_pred hHHHHHHHHHHHhcCcc-----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEE
Q 015160 145 VDKVRCIIRNIVRDWAA-----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGN 217 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~-----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~Gn 217 (412)
..+|......++.-+.- .....| .|-+.+.+..... ++.+|||+|||||.+|..+|+.. ..|+|+
T Consensus 10 ~~~v~~vF~~ia~~YD~~n~~~S~g~~~-----~Wr~~~i~~~~~~---~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~ 81 (238)
T COG2226 10 QEKVQKVFDKVAKKYDLMNDLMSFGLHR-----LWRRALISLLGIK---PGDKVLDVACGTGDMALLLAKSVGTGEVVGL 81 (238)
T ss_pred HHHHHHHHHhhHHHHHhhcccccCcchH-----HHHHHHHHhhCCC---CCCEEEEecCCccHHHHHHHHhcCCceEEEE
Confidence 35666666666553332 122223 3666666655322 67899999999999999999996 789999
Q ss_pred eCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCC
Q 015160 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297 (412)
Q Consensus 218 D~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~ 297 (412)
|+|..||..++-.+ . +.. ..+++|+.||+.++. +.+++
T Consensus 82 D~s~~ML~~a~~k~---~------------------------------~~~------~~~i~fv~~dAe~LP---f~D~s 119 (238)
T COG2226 82 DISESMLEVAREKL---K------------------------------KKG------VQNVEFVVGDAENLP---FPDNS 119 (238)
T ss_pred ECCHHHHHHHHHHh---h------------------------------ccC------ccceEEEEechhhCC---CCCCc
Confidence 99999998776211 0 000 112889999999874 46899
Q ss_pred ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-------cCc--chh---hhhc---cCC----CCC--------c
Q 015160 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-------GPL--LYH---FADL---YGQ----EDE--------M 350 (412)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-------GPL--lyh---~~~~---~g~----~~~--------~ 350 (412)
||+|...|=|....|+..+|++++|+|||||.++.+ +++ .|+ +... .|. ..+ .
T Consensus 120 FD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi 199 (238)
T COG2226 120 FDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI 199 (238)
T ss_pred cCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHH
Confidence 999988898998889999999999999999988742 121 011 1100 110 010 1
Q ss_pred ccCCCHHHHHHHHHhCCCEEEE
Q 015160 351 SIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.-.++.+++++.++++||+.+.
T Consensus 200 ~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 200 RRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred HhCCCHHHHHHHHHhcCceEEe
Confidence 2246999999999999999887
No 11
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=3.6e-15 Score=143.41 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=109.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||++|+.|+|+|+|..|+..|+-.+.. .
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~---~------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEA---K------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---c-------------------------------
Confidence 456999999999999999999999999999999999877632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe----cCcch------
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 338 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~----GPLly------ 338 (412)
....++.++.+|+.++.. ...++||+|++...+....+...+++.++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011236788899877632 22578999998776665566789999999999999999732 11111
Q ss_pred --hhhhc-cC----CCCCcccCCCHHHHHHHHHhCCCEEEEEeecc--ccCCCCc
Q 015160 339 --HFADL-YG----QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNP 384 (412)
Q Consensus 339 --h~~~~-~g----~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~--s~Y~~d~ 384 (412)
++... .. ........++.+++.++++++||+++....+. ..|..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~ 218 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNK 218 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcc
Confidence 11000 00 00001245799999999999999999866443 4555553
No 12
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=1.3e-14 Score=145.63 Aligned_cols=144 Identities=14% Similarity=0.122 Sum_probs=105.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..|+.... ..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~---~~------------------------------- 176 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHAD---MD------------------------------- 176 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hc-------------------------------
Confidence 45699999999999999999999999999999999987762110 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--cc--hhhh---
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--LL--YHFA--- 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP--Ll--yh~~--- 341 (412)
....++.++.+|+.++.. ..++||+|++...|....+...+++.++++|||||.+|-..+ -. |...
T Consensus 177 ----~~~~~i~~~~~dae~l~~---~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~ 249 (322)
T PLN02396 177 ----PVTSTIEYLCTTAEKLAD---EGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVG 249 (322)
T ss_pred ----CcccceeEEecCHHHhhh---ccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhh
Confidence 001237788899877632 357899999988777777888999999999999999984211 10 1000
Q ss_pred ----h--c-cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 ----D--L-YGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 ----~--~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. . .|... -.-.++.+|+.+++++.||++++..
T Consensus 250 ~eyi~~~lp~gth~-~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 250 AEYILRWLPKGTHQ-WSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred HHHHHhcCCCCCcC-ccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 0 0 01110 1124799999999999999999865
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.65 E-value=2.7e-15 Score=139.45 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++.... .. .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~---~~-----------------------~~------ 77 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKA---RE-----------------------NL------ 77 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH---Hh-----------------------CC------
Confidence 34689999999999999999999999999999999976653221 00 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
++....+|+..... .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 78 --------~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 78 --------PLRTDAYDINAAAL----NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred --------CceeEeccchhccc----cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 03345556543221 35799999875332 2346789999999999999985431 1211111011
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+...+.++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 122356799999999995 69998843
No 14
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.63 E-value=7.5e-15 Score=140.89 Aligned_cols=163 Identities=11% Similarity=0.086 Sum_probs=105.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+.+++.+..+ .++.+|||||||.|+.+..||.+||+|+|+|+|...+..+. - +..+.|=+..
T Consensus 30 p~L~~~~~~l~~----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~--- 93 (226)
T PRK13256 30 EFLVKHFSKLNI----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH--- 93 (226)
T ss_pred HHHHHHHHhcCC----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec---
Confidence 344466655432 14579999999999999999999999999999998875432 1 0111110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-cccCChh-hHHHHHHHHHHhccCCcE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAH-NIVEYIEIISRILKDGGV 329 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~-Ni~~yl~~I~~~LKPGG~ 329 (412)
.+.. ......++.+.+|||+++...+...+.||+|+-+ +|+...+ -..+|++.+.++|+|||.
T Consensus 94 -------~~~~--------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 94 -------GNDY--------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred -------cccc--------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 0000 0011234899999999974311224689998854 3443333 367899999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
++-+ .+.+....+++ ++.++.+||++++.. +|+++.
T Consensus 159 llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 159 ILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 9863 23332222333 477999999999965 566554
No 15
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.63 E-value=1.5e-14 Score=138.08 Aligned_cols=174 Identities=11% Similarity=0.118 Sum_probs=117.8
Q ss_pred chHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHH
Q 015160 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 144 d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~M 223 (412)
|..+|+......+..|..... ....+.+.|.+.++.. +..+|||+|||+|.++..|+++|..|+|+|+|..|
T Consensus 5 ~k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~ 76 (251)
T PRK10258 5 NKQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQR---KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPM 76 (251)
T ss_pred CHHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCcc---CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHH
Confidence 345566555555555653322 2334666666666532 45789999999999999999999999999999999
Q ss_pred HHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE
Q 015160 224 MICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 303 (412)
Q Consensus 224 L~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT 303 (412)
+..++... + ...++.+|+.++. ...++||+|++
T Consensus 77 l~~a~~~~---------------------------------~-----------~~~~~~~d~~~~~---~~~~~fD~V~s 109 (251)
T PRK10258 77 LAQARQKD---------------------------------A-----------ADHYLAGDIESLP---LATATFDLAWS 109 (251)
T ss_pred HHHHHhhC---------------------------------C-----------CCCEEEcCcccCc---CCCCcEEEEEE
Confidence 86554110 0 0245778877653 23578999999
Q ss_pred ecccCChhhHHHHHHHHHHhccCCcEEEEe--cCcchh-hhhc---cCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 304 CFFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 304 ~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--GPLlyh-~~~~---~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+.+....++...|.+++++|||||+++-. ++-... +... .+..+...-.++.+++..++...||+...
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 184 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHI 184 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeee
Confidence 887776778889999999999999999853 331111 1110 01111112247999999999988887644
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.61 E-value=2.1e-15 Score=144.96 Aligned_cols=143 Identities=24% Similarity=0.261 Sum_probs=75.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..|+..+...
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------------------------------- 95 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------------------------------- 95 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh-------------------------------
Confidence 5679999999999999999986 3 58999999999998777332110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe------cCcc--
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------GPLL-- 337 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~------GPLl-- 337 (412)
...++.+++||..++.. .+++||+|++.|-|...+|..+.|++++|+|||||+++-+ .|++
T Consensus 96 --------~~~~i~~v~~da~~lp~---~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 96 --------GLQNIEFVQGDAEDLPF---PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp --------T--SEEEEE-BTTB--S----TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred --------CCCCeeEEEcCHHHhcC---CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 01147899999988743 4799999998888888888999999999999999999732 1111
Q ss_pred -hhhhhc-----cC----CC-CC-----ccc--CCCHHHHHHHHHhCCCEEEEE
Q 015160 338 -YHFADL-----YG----QE-DE-----MSI--ELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 338 -yh~~~~-----~g----~~-~~-----~~i--eLS~EEL~~ll~~~GFeii~e 373 (412)
|.+.-. .| .. .. .++ ..+.+|+.++++++||+.++-
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHH--------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111000 01 00 00 022 248899999999999997763
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=5.2e-15 Score=123.02 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++.+|++ .|.+|+|+|+|+.|+..++-.... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~----------------------------- 48 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---E----------------------------- 48 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---c-----------------------------
Confidence 356999999999999999999 899999999999999877633200 0
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEec-ccC---ChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCF-FID---TAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF-~ely~~~~~~~~fD~VvT~F-FID---ta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|+ .+.. ..+.||+|+... .++ ..++..++++.+++.|||||++|-
T Consensus 49 ------~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 49 ------GLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp ------TTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 1124589999999 3332 246799999877 222 115678899999999999999983
No 18
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.60 E-value=2e-14 Score=141.01 Aligned_cols=134 Identities=17% Similarity=0.184 Sum_probs=94.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-... .. .+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~---~~-----------------------~l------- 167 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAE---KE-----------------------NL------- 167 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---Hc-----------------------CC-------
Confidence 3489999999999999999999999999999999976652221 00 00
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
++.+..+|+.+... .++||+|++.+ |++ .+++..+++.++++|||||+++-+.+.- .+....
T Consensus 168 -------~v~~~~~D~~~~~~----~~~fD~I~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~---~~~~~~ 232 (287)
T PRK12335 168 -------NIRTGLYDINSASI----QEEYDFILSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCAMD---TEDYPC 232 (287)
T ss_pred -------ceEEEEechhcccc----cCCccEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecc---cccCCC
Confidence 24566677665322 47899999765 344 3568899999999999999966432221 111111
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++.....++.+||++++. +|++++-
T Consensus 233 ~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 233 PMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 112245689999999995 5999873
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.59 E-value=1.5e-13 Score=129.18 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=117.1
Q ss_pred hHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015160 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (412)
..+|+....+++..|-.-....--..+..+.+.+.+.+.. .++.+|||+|||+|.++..|++. +..|+|+|+|.
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3566666777766665411100000011222333333332 24679999999999999999976 35899999999
Q ss_pred HHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEE
Q 015160 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAV 301 (412)
Q Consensus 222 ~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~V 301 (412)
.|+..++-.+... . ..++.++.+|+.++.. ..++||+|
T Consensus 81 ~~~~~a~~~~~~~----------------------------~-----------~~~v~~~~~d~~~~~~---~~~~fD~V 118 (231)
T TIGR02752 81 NMLSVGRQKVKDA----------------------------G-----------LHNVELVHGNAMELPF---DDNSFDYV 118 (231)
T ss_pred HHHHHHHHHHHhc----------------------------C-----------CCceEEEEechhcCCC---CCCCccEE
Confidence 9997665322100 0 0136788889877532 35789999
Q ss_pred EEecccCChhhHHHHHHHHHHhccCCcEEEEe--c-Ccchhhhh-----------c----cCCC--------CCcccCCC
Q 015160 302 VTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G-PLLYHFAD-----------L----YGQE--------DEMSIELS 355 (412)
Q Consensus 302 vT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~--G-PLlyh~~~-----------~----~g~~--------~~~~ieLS 355 (412)
++.+.+...++..+.++++.++|||||+++-. + |-...+.. . .+.. +...-..+
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 98887777778889999999999999999842 1 11100000 0 0000 00011358
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 015160 356 LEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 356 ~EEL~~ll~~~GFeii~e~ 374 (412)
.+|++++++++||++++..
T Consensus 199 ~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHHHHHcCCCeeEEE
Confidence 8999999999999988754
No 20
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.59 E-value=3e-14 Score=142.79 Aligned_cols=143 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------------------------------- 168 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------------------------------- 168 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc---------------------------------
Confidence 457999999999999999999997 4999999999986444221100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC--------cchh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--------LLYH 339 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP--------Llyh 339 (412)
....++.+..+|+.++.. .+.||+|++.-.|....+...+|+.++++|||||.+|--.. .++.
T Consensus 169 -----~~~~~i~~~~~d~e~lp~----~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 169 -----GNDQRAHLLPLGIEQLPA----LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred -----CCCCCeEEEeCCHHHCCC----cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 001136788888877632 57899999875555556788999999999999999984210 0111
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+.+..-+...+..|.+++..+++++||++++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0001111111223599999999999999998754
No 21
>PLN02244 tocopherol O-methyltransferase
Probab=99.58 E-value=4e-14 Score=142.51 Aligned_cols=145 Identities=15% Similarity=0.126 Sum_probs=102.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++......
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999997666332110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhh---c-
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFAD---L- 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~---~- 343 (412)
....++.+..+|+.++. ...++||+|++..-+....+..+++++++++|||||.++-.....-.... .
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01123788999988753 23689999998876666677889999999999999999853211000000 0
Q ss_pred -------c---CCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 -------Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 -------~---g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ...-...-..+.+++..+++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 0 000000112489999999999999988743
No 22
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=2.8e-14 Score=113.56 Aligned_cols=93 Identities=26% Similarity=0.317 Sum_probs=73.3
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCC
Q 015160 194 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 272 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~ 272 (412)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 8999999999999976652211
Q ss_pred CCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 273 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 273 ~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..+.++..+|+.++. ..+++||+|+++..+...++...++++++|+|||||+++
T Consensus 41 --~~~~~~~~~d~~~l~---~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDLP---FPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSSS---S-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhCc---cccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 112457888988873 357899999988765544889999999999999999987
No 23
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=1.7e-13 Score=131.12 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999996554110
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcch---h---h
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 340 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLly---h---~ 340 (412)
.++.+..+|+.++.. .++||+|++.+.++...+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 014567788876532 36899999988777667788999999999999999986333211 0 1
Q ss_pred ---------hhccCCCC-CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 341 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 341 ---------~~~~g~~~-~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...++... ......+.+++..++.+.||.+....
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 01234688899999999999875543
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.54 E-value=1.1e-13 Score=129.89 Aligned_cols=134 Identities=18% Similarity=0.176 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.++||+|||.||.+..||++||.|+|+|.|...|...+-+.+. . .+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l------ 77 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GL------ 77 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cc------
Confidence 567999999999999999999999999999999998654433211 0 11
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
.++....|+.+... .+.||+|++. .||+. +.+...++.|...|||||+.+-.... ..++++
T Consensus 78 --------~i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~~---~~~d~p 141 (192)
T PF03848_consen 78 --------DIRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTFM---ETPDYP 141 (192)
T ss_dssp --------TEEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEEB-----SSS-
T ss_pred --------eeEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEec---ccCCCC
Confidence 15667778776532 3689999863 36774 45888999999999999998742211 111122
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+....+.+...||+... .||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y--~dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYY--ADWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHT--TTSEEEE
T ss_pred CCCCCCcccCHHHHHHHh--CCCeEEE
Confidence 122235668889999999 4799988
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.53 E-value=1.1e-13 Score=138.69 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=98.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998654322211000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe-----cCc---chh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPL---LYH 339 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~-----GPL---lyh 339 (412)
..++.+..+++.++.. .++||+|++...+....++.++|++++++|||||.+|-- |+. +..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0124556667666532 358999998866655677889999999999999999841 211 000
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ..+.......+-.|.++++.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000111234599999999999999998743
No 26
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.51 E-value=3.3e-13 Score=126.26 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=100.7
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999987665222100
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~ 349 (412)
....++++..+|+.+... .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~~~----~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKDPF----PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccCCC----CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 011236788888765421 3589999988766666678899999999999999998644321001110 00111
Q ss_pred cccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 350 MSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 350 ~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+.++.+++.+++.+.||++++...
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 13467999999999999999988553
No 27
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.50 E-value=6.5e-13 Score=126.30 Aligned_cols=141 Identities=15% Similarity=0.079 Sum_probs=97.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|.++..|+++ +..|+|+|+|..||..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEEecCcc-----
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN~GPLl----- 337 (412)
....++.++.+|+.++.. ..+|+|++.+-+.. ..+...+++.++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236789999987642 35898887664332 2457899999999999999999653321
Q ss_pred -----hh----hhhccCCCC-----------CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 338 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 338 -----yh----~~~~~g~~~-----------~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.. +....|..+ .....+|.+|++++++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 100001100 012357999999999999998654
No 28
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=2.3e-13 Score=131.17 Aligned_cols=206 Identities=16% Similarity=0.163 Sum_probs=127.2
Q ss_pred HHHHHHHhcCcccChhHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 150 CIIRNIVRDWAAEGKTERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 150 s~L~q~~RDWS~eG~~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+.|++.. |..+|+-..--.. +--++++.+.....-...+.+|||.|||-|-|+.-+|+.|+.|+|+|+|+.|+-.|+
T Consensus 21 ~~la~~w--wd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak 98 (243)
T COG2227 21 EALASRW--WDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK 98 (243)
T ss_pred HHHHhhh--cCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHH
Confidence 3566555 4444443332111 122344444443211136889999999999999999999999999999999998776
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID 308 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID 308 (412)
+ ++.+. ++. +.+.++...++-. ..++||+|++.=.|.
T Consensus 99 --~-ha~e~-----------------------gv~--------------i~y~~~~~edl~~---~~~~FDvV~cmEVlE 135 (243)
T COG2227 99 --L-HALES-----------------------GVN--------------IDYRQATVEDLAS---AGGQFDVVTCMEVLE 135 (243)
T ss_pred --H-hhhhc-----------------------ccc--------------ccchhhhHHHHHh---cCCCccEEEEhhHHH
Confidence 1 11110 111 3355555555543 237999998888898
Q ss_pred ChhhHHHHHHHHHHhccCCcEEEEec----Ccchhhhhc---------cCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 309 TAHNIVEYIEIISRILKDGGVWINLG----PLLYHFADL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 309 ta~Ni~~yl~~I~~~LKPGG~wIN~G----PLlyh~~~~---------~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..+|...+++...++|||||+.+--. +.-|-..-. +.+.-...-.+-.+|+...+...||++.....
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g 215 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKG 215 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEEeecc
Confidence 88899999999999999999997322 221211110 11111112346789999999999999987542
Q ss_pred c-cccCCCCcccccccccceEEEEEEEc
Q 015160 376 I-ETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 376 i-~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
. ..++. +.-. +...+.+.|+++.++
T Consensus 216 ~~y~p~~-~~~~-l~~~~~vNy~~~~~~ 241 (243)
T COG2227 216 LTYNPLT-NSWK-LSNDVSVNYMVHAQR 241 (243)
T ss_pred eEecccc-ceEE-ecCCccceEEEEeec
Confidence 1 11111 1111 223567777766554
No 29
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.49 E-value=3.8e-13 Score=130.84 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=98.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..++-...
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~----------------------------------- 96 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS----------------------------------- 96 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC-----------------------------------
Confidence 5679999999999999999875 7899999999999976651110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-hhhHHHHHHHHHHhccCCcEEEEecCcchh---hhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-a~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh---~~~ 342 (412)
...++.+..+|+.+.. ...++||+|++.. ++.. ..+...+|+.++++|||||+++-..+..-. +..
T Consensus 97 ------~~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 97 ------DKNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred ------cCCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 0013678889987642 2357999999853 3332 247889999999999999999854322100 000
Q ss_pred ccC--CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~g--~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00001123689999999999999988754
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.49 E-value=6.8e-13 Score=127.51 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
++.+|||+|||+|.++..|++ .+..|+|+|+|..|+..|+-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 456899999999999998887 3679999999999998776332110
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEEEe--------
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINL-------- 333 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wIN~-------- 333 (412)
....++.++.+|+.++.. +.+|+|+.++ |++ ..+...++++|+++|||||.++..
T Consensus 106 --------~~~~~v~~~~~d~~~~~~-----~~~D~vv~~~~l~~l~-~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIAI-----ENASMVVLNFTLQFLE-PSERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCCC-----CCCCEEehhhHHHhCC-HHHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 001237889999887532 4589988765 454 234678999999999999999863
Q ss_pred --cCcchh----hhhccCCCC-----------CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 334 --GPLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 334 --GPLlyh----~~~~~g~~~-----------~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+++++. +....|-.. .....+|.++..++|+++||+.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 222211 110111110 012246999999999999998654
No 31
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.47 E-value=1.4e-12 Score=130.83 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=98.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-..... ....
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~--------------------------~~~~---- 193 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEA--------------------------LAAL---- 193 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------------------cccc----
Confidence 4579999999999999999999999999999999998766322100 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-CCh-hhHHHHHHHHHHhccCCcEEEEecCcchhhhh--c-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DTA-HNIVEYIEIISRILKDGGVWINLGPLLYHFAD--L- 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~--~- 343 (412)
....++.|..+|+.++ .++||+|+++..+ +.. ..+...++.+.+ |++||++|.+.|-.+.+.- .
T Consensus 194 ----~~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 194 ----PPEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred ----ccccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 0011367788887543 3689999877543 222 224456666664 5789999988775443221 1
Q ss_pred ---cCCCC--CcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 344 ---YGQED--EMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 344 ---~g~~~--~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
..+.. ...+..+.+|++++++++||+++..+.+
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMT 300 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence 11111 1134458999999999999999886643
No 32
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.47 E-value=2.5e-12 Score=120.66 Aligned_cols=160 Identities=16% Similarity=0.256 Sum_probs=107.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
+..++++|... ..++.+|||+|||+|.++..++++|..|+|+|+|..|+..++-.+.. .
T Consensus 42 ~~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~---~------------- 100 (219)
T TIGR02021 42 RRKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQG---R------------- 100 (219)
T ss_pred HHHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---c-------------
Confidence 33466666531 12467999999999999999999999999999999999877622210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG 328 (412)
....++.+..+|+.++ .++||+|+.++.+. ...++...++.+++++++|+
T Consensus 101 ----------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~ 152 (219)
T TIGR02021 101 ----------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERV 152 (219)
T ss_pred ----------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCE
Confidence 0012367888887664 26899998875432 34567889999999999776
Q ss_pred EEEEecCcchhh------hhccCC--CCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 329 VWINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 329 ~wIN~GPLlyh~------~~~~g~--~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
++. +.|-.+.+ ...... .+.....++.++++.+++++||+++..+....+|
T Consensus 153 ~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 153 IFT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EEE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 665 44322111 010111 1111335799999999999999999877544443
No 33
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.46 E-value=2.9e-12 Score=129.74 Aligned_cols=140 Identities=19% Similarity=0.084 Sum_probs=101.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++. +..|+|+|+|..|+..++-.. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----------------------------~----- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------------------------P----- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----------------------------h-----
Confidence 4579999999999999999875 578999999999987655110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhh--hhcc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 344 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~--~~~~ 344 (412)
..++.+..+|+.++.. ..++||+|+++..+....+....|++++++|||||.++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp~---~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLPF---PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCCC---CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 0125678889877532 35789999998767666677889999999999999997665532111 0000
Q ss_pred CCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 345 GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 345 g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.+......+.+|+.++++++||+.++...
T Consensus 228 --~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 228 --ADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred --hhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 00001135899999999999999988654
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.45 E-value=2.5e-12 Score=126.43 Aligned_cols=156 Identities=22% Similarity=0.241 Sum_probs=97.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+-+.+.- +++.+|||+|||-|.++..+|++ |..|+|+.+|......++-.. .+.
T Consensus 50 k~~~~~~~~~l---~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~---~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLGL---KPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERI---REA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHH---HCS---------------
T ss_pred HHHHHHHHhCC---CCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHH---Hhc---------------
Confidence 44555554432 37889999999999999999999 999999999999987655221 111
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~w 330 (412)
...+++.+..+|++++. .+||.||++=-+... .|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889998863 489999998544443 68999999999999999999
Q ss_pred EE--ec--CcchhhhhccC-------CCCCcccCCCHHHHHHHHHhCCCEEEEEeecc
Q 015160 331 IN--LG--PLLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (412)
Q Consensus 331 IN--~G--PLlyh~~~~~g-------~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~ 377 (412)
+. ++ .-.++.+.... .-| .+.-.+.+++...+++.||+++......
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-H
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEcC
Confidence 73 21 11122110000 001 1234589999999999999998866443
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.45 E-value=2e-12 Score=125.12 Aligned_cols=141 Identities=16% Similarity=0.104 Sum_probs=100.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++. |. .|+|+|+|..|+..++...... .
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g---- 126 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G---- 126 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999888775 54 6999999999998776322100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC-----cchhh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 340 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP-----Llyh~ 340 (412)
..++.+..+|+.++.. ..+.||+|++...+....+...+++.++++|||||+++-.+. +....
T Consensus 127 ---------~~~v~~~~~d~~~l~~---~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 127 ---------YTNVEFRLGEIEALPV---ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ---------CCCEEEEEcchhhCCC---CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 0136788899877532 357899999887777777788999999999999999985322 11100
Q ss_pred hh---ccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 341 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 341 ~~---~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.. ..+.. ..-.++.+++..++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012368899999999999998764
No 36
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.44 E-value=8.2e-13 Score=117.05 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=82.1
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|+++..|++ . +..++|+|+|..|+..|+..+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------------------------------- 51 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------------------------------- 51 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc-------------------------------
Confidence 567999999999999999994 4 679999999999998777433210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. ..++.+.++|+.++... . .+.||+|++...+....+....++.+.++||+||++|-
T Consensus 52 -------~-~~ni~~~~~d~~~l~~~-~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 52 -------G-LDNIEFIQGDIEDLPQE-L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp -------T-STTEEEEESBTTCGCGC-S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------c-ccccceEEeehhccccc-c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 0 11488999999995421 1 17999999987777777888999999999999999985
No 37
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.42 E-value=1.3e-11 Score=114.90 Aligned_cols=145 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++++ ..++|+|+|..|+..++-.... .
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~---~---------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD---L---------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc---c----------------------------
Confidence 45799999999999999999987 7899999999998765521100 0
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec---Ccchh---
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 339 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G---PLlyh--- 339 (412)
....++.+..+|+.++.. ..+.||+|+..+.+....++...++.+.++|||||++|-+. |-...
T Consensus 100 -------~~~~~~~~~~~d~~~~~~---~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALPF---PDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCCC---CCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 001236788889877532 35789999988877777788999999999999999997532 11100
Q ss_pred ----h--------hhccCCCCC--------cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 340 ----F--------ADLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 340 ----~--------~~~~g~~~~--------~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+ ....+.... ..-..+.+++..+++++||++++..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 224 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYR 224 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeee
Confidence 0 000000000 0113588999999999999998765
No 38
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.41 E-value=1.9e-11 Score=115.18 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=106.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
--++++....... ++.+||++|||+|.++..++++|..|+|+|+|..|+..++......
T Consensus 35 ~~~~~l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------ 93 (233)
T PRK05134 35 LRLNYIREHAGGL---FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------ 93 (233)
T ss_pred HHHHHHHHhccCC---CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc------------------
Confidence 3356666655322 5678999999999999999999999999999999987655211100
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
...+.+..+|+.++.. ...+.||+|+..+.+....+....++.+.++|+|||+++-
T Consensus 94 ----------------------~~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v 149 (233)
T PRK05134 94 ----------------------GLKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFF 149 (233)
T ss_pred ----------------------CCceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEE
Confidence 0014556667665431 1247899999887777777888999999999999999874
Q ss_pred ecCc--chhh-------hhccC----CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPL--LYHF-------ADLYG----QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPL--lyh~-------~~~~g----~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+- ...+ +...+ ......-.++.+++..++++.||+++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 150 STLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred EecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 2221 1000 00000 00001224689999999999999998754
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.41 E-value=5.7e-12 Score=131.23 Aligned_cols=140 Identities=14% Similarity=0.042 Sum_probs=99.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+....
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh-----------------------------------
Confidence 5679999999999999999986 7899999999999976651100
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcc------hhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 341 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------yh~~ 341 (412)
....++.+..+|+.+... ..++||+|++..-+....+...+++.++++|||||.++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~~---~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKTY---PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCCC---CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 001236788899876532 25789999987655555678899999999999999998432110 0000
Q ss_pred hccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 342 ~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.... .. .....+.+++.++++++||+++..
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeee
Confidence 0000 00 112458999999999999998853
No 40
>PRK05785 hypothetical protein; Provisional
Probab=99.40 E-value=2.3e-12 Score=122.90 Aligned_cols=105 Identities=17% Similarity=0.266 Sum_probs=81.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
+++.+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..|+ ++
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~-------~~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL-------VA--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH-------hc---------------
Confidence 4555555433 3469999999999999999999 689999999999997554 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.+|+.++. ..+++||+|++.|-|...+|+.+.+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~lp---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEALP---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhCC---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 012457777653 3468999999998888888899999999999999655554
Q ss_pred e
Q 015160 333 L 333 (412)
Q Consensus 333 ~ 333 (412)
+
T Consensus 146 ~ 146 (226)
T PRK05785 146 M 146 (226)
T ss_pred e
Confidence 4
No 41
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.40 E-value=6.9e-12 Score=124.27 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=87.5
Q ss_pred HHHHHHHHHHh--cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015160 147 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (412)
Q Consensus 147 kv~s~L~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (412)
+=.....+|++ +|-. -..|.+ .+....+.+.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 44445677766 4442 233332 23334444544443 3468999999999999999888 69999999999
Q ss_pred HHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCC-CCccE
Q 015160 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 300 (412)
Q Consensus 222 ~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~-~~fD~ 300 (412)
.||..+.--+. . .+|.+ ++..++|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~---~--------------------------~~p~~---------~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALA---A--------------------------DYPQL---------EVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHH---h--------------------------hCCCc---------eEEEEEEcccchhhhhcccccCCeE
Confidence 99976652211 0 01111 2677899998743211111 11223
Q ss_pred EEE---ecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 301 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 301 VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
++. .+..-..++....|+.|+++|+|||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 332 1333345567899999999999999998
No 42
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.39 E-value=1.9e-11 Score=112.75 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++.+. .++|+|+|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999865441110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC---cc----h
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 338 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP---Ll----y 338 (412)
...++.+..+|+.++.. ..+.||+|++.+.+....+....++.+.++|||||+++-.+. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALPF---EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCCC---CCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 01126778888887532 246899999888777777888999999999999999985322 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------ccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 339 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 339 ----h~~~~---~g~---~~~~---------~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.... .+. .... .-.++.++++.++++.||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988755
No 43
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.39 E-value=2.6e-11 Score=113.10 Aligned_cols=145 Identities=14% Similarity=0.135 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+.. . .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~---~-----------------------~~------ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKK---D-----------------------PL------ 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHH---c-----------------------CC------
Confidence 467999999999999999999999999999999998765522110 0 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh---
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 341 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL----lyh~~--- 341 (412)
.++.+..+|+.++.. ...+.||+|++...+....+....++.+.++|+|||+++-..+. .+...
T Consensus 93 -------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 93 -------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred -------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 025677788776532 12378999998877777778889999999999999998743221 00000
Q ss_pred --hccCCCC----CcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 342 --DLYGQED----EMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 342 --~~~g~~~----~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...+..+ ...-.++.+++.+++++.||++++..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 0000000 01124588999999999999998855
No 44
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=8.5e-11 Score=109.69 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+|+ .+..|+|+|.|..|+..++..+.. .
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~---~----------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAE---L----------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH---c-----------------------------
Confidence 367999999999999999986 367999999999999877632210 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
.. .++++..+|+.++.. .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~~----~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFGQ----EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCCC----CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 127888899887532 468999997643 4578899999999999999985311
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-...++.++.+..|..+.+.-
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeeeE
Confidence 1234567778888899988754
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.35 E-value=2.9e-11 Score=110.24 Aligned_cols=125 Identities=18% Similarity=0.204 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..++++|..|+|+|+|+.|+..++..+.. . .
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~----------------------~------- 65 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N----------------------N------- 65 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 346899999999999999999999999999999999766632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh--------------------hhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA--------------------HNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta--------------------~Ni~~yl~~I~~~LKPG 327 (412)
.++.+..+|+.+.. .++||+|++.- |+... .-+.++++.+.++||||
T Consensus 66 -------~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 66 -------VGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred -------CceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 01566778876642 25899999763 32111 11467899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.++-+.+ ..-...++..++++.||+.+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99874211 11236888999999999988754
No 46
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=4.8e-11 Score=111.55 Aligned_cols=142 Identities=15% Similarity=0.273 Sum_probs=95.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..|+-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4569999999999999999999999999999999998776222100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-C-ChhhHHHHHHHHHHhccCCcEEEEecCc---chhhhhc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-D-ta~Ni~~yl~~I~~~LKPGG~wIN~GPL---lyh~~~~ 343 (412)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.++++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236788888432 14789999987544 2 34567788888888775 4555554332 1111100
Q ss_pred ---c-CC-CCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 344 ---Y-GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 344 ---~-g~-~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
. +. .......++.+++..++++.||++.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 00 11113457999999999999999988653
No 47
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=9e-12 Score=115.66 Aligned_cols=137 Identities=19% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------------------------------- 78 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------------------------------- 78 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----------------------------------
Confidence 346899999999999999999985 4699999999986544100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.++.+|+.+... ..++||+|++.+.+....+...+++.++++|||||+++-..|..-.+......
T Consensus 79 --------~~~~~~~~~d~~~~~~---~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 79 --------SENVQFICGDAEKLPL---EDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred --------CCCCeEEecchhhCCC---CCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 0125678888876532 35789999998877766778899999999999999998644322111110000
Q ss_pred -CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 -EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 -~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.....-..+.+++..++.+. |+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235777888888776 76554
No 48
>PRK08317 hypothetical protein; Provisional
Probab=99.34 E-value=4.1e-11 Score=110.83 Aligned_cols=140 Identities=18% Similarity=0.144 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..++++. ..|+|+|+|..|+..++-...
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--------------------------------- 65 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--------------------------------- 65 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---------------------------------
Confidence 56799999999999999999874 589999999999876652100
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc----chhhh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 341 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL----lyh~~ 341 (412)
....++.+..+|+.++.. ..++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 66 -------~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 66 -------GLGPNVEFVRGDADGLPF---PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred -------CCCCceEEEecccccCCC---CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 001236778888766432 3578999999887777778899999999999999999854431 11100
Q ss_pred hc---------cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 342 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 342 ~~---------~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+. .... ..-..+..++..+++++||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999987763
No 49
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=3.6e-13 Score=110.55 Aligned_cols=97 Identities=23% Similarity=0.215 Sum_probs=56.2
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 194 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+.. . ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~------~-------------------~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE------L-------------------GNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH------C-------------------T-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh------c-------------------CCcc--------
Confidence 79999999999999999 88999999999997322211100 0 0000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
...+.+...|..+.. ..++||+|++.+.+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222333322211 1369999999988877789999999999999999986
No 50
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.33 E-value=4.1e-11 Score=110.86 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..+|..+ ..|+|+|.|..|+..++...+. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~----~----------------------------- 89 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAE----L----------------------------- 89 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHH----h-----------------------------
Confidence 5689999999999999999775 5799999999999766532210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
. ..++.++.+|+.++.. .++||+|++.. ..++.++++.++++|||||+++- ++.
T Consensus 90 -----~-~~~i~~i~~d~~~~~~----~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi-----~~~------- 143 (181)
T TIGR00138 90 -----G-LNNVEIVNGRAEDFQH----EEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLA-----YKG------- 143 (181)
T ss_pred -----C-CCCeEEEecchhhccc----cCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEE-----EcC-------
Confidence 0 0137889999887521 47899998755 24567889999999999999984 221
Q ss_pred CCcccCCCHHHHHHHHHh---CCCEEEEEee
Q 015160 348 DEMSIELSLEDVKRVALH---YGFEFEKEKT 375 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~---~GFeii~e~~ 375 (412)
.-...++..+.++ .||+.++...
T Consensus 144 -----~~~~~~~~~~~e~~~~~~~~~~~~~~ 169 (181)
T TIGR00138 144 -----KKYLDEIEEAKRKCQVLGVEPLEVPP 169 (181)
T ss_pred -----CCcHHHHHHHHHhhhhcCceEeeccc
Confidence 0123444444444 8999887653
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.31 E-value=4.8e-11 Score=122.45 Aligned_cols=136 Identities=18% Similarity=0.172 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~------ 212 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------G------ 212 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------c------
Confidence 5679999999999999999986 8899999999999976652110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCcc-hhhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPLL-YHFAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN--~GPLl-yh~~~ 342 (412)
.++.+..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.-. +...+
T Consensus 213 --------l~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 213 --------LPVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred --------CeEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 0145667777654 268999998754443 35678999999999999999985 22111 00000
Q ss_pred cc-C--CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LY-G--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~-g--~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+ . .-| ...-.+.+++..+++. ||++....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~~-~~~v~d~~ 311 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASEG-LFVMEDWH 311 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHHC-CcEEEEEe
Confidence 00 0 001 1234588999998764 89988744
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.31 E-value=9.5e-12 Score=121.05 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
...+|||+|||+|.++..|++. |..|+|+|+|..|+..|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------------------------------- 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------------------------------- 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---------------------------------
Confidence 3468999999999999999875 34789999999999655410
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
. .++.+..+|..++. ...++||+|++.|. . ..+++++++|||||++|.+.|.-.|
T Consensus 132 ~-----------~~~~~~~~d~~~lp---~~~~sfD~I~~~~~---~----~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 132 Y-----------PQVTFCVASSHRLP---FADQSLDAIIRIYA---P----CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred C-----------CCCeEEEeecccCC---CcCCceeEEEEecC---C----CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 0 12567888877653 34679999998653 1 2367899999999999987664433
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.30 E-value=1.8e-10 Score=105.79 Aligned_cols=122 Identities=14% Similarity=0.001 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-.... + .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~------~----------------------~--- 79 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQR------F----------------------G--- 79 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH------h----------------------C---
Confidence 45699999999999999999885 5899999999998766521110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.+..+|..... .+.||+|+..... .++.++++.++++|||||+++-...
T Consensus 80 --------~~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 80 --------CGNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred --------CCCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 012567777764221 3579999875432 3466789999999999999974110
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
..-+.+++..++++.||+.++.
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceE
Confidence 1124578889999999986663
No 54
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.29 E-value=9.3e-12 Score=103.05 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 193 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
|||+|||+|+.+..|++.. -.++|+|+|..||..++..... . .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~---~-----------------------~------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE---D-----------------------G------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH---T-----------------------T------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh---c-----------------------C------
Confidence 7999999999999999884 7999999999999765521100 0 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG 328 (412)
.++.++++|+.++.. ..++||+|++.+ ..-+.+.+...++.+.++|||||
T Consensus 49 --------~~~~~~~~D~~~l~~---~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 --------PKVRFVQADARDLPF---SDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------TTSEEEESCTTCHHH---HSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------CceEEEECCHhHCcc---cCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 026789999988643 357999999842 22345568999999999999998
No 55
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=2.5e-11 Score=118.39 Aligned_cols=143 Identities=20% Similarity=0.226 Sum_probs=99.6
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||.|||+|-|+.-||+.|..|+|+|.|..|+.+|+-- .+.. | +. .
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h--~~~d-------P-----------------~~----~- 138 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH--KKMD-------P-----------------VL----E- 138 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh--hhcC-------c-----------------hh----c-
Confidence 46799999999999999999999999999999999988711 1100 0 00 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE----EecCcchh-----h
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----NLGPLLYH-----F 340 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI----N~GPLlyh-----~ 340 (412)
....-++++...|..++ .+.||+||+.-.+....|+.++++...++|||||.+. |-+=+-|+ .
T Consensus 139 --~~~~y~l~~~~~~~E~~------~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~ 210 (282)
T KOG1270|consen 139 --GAIAYRLEYEDTDVEGL------TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA 210 (282)
T ss_pred --cccceeeehhhcchhhc------ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence 01112356666664443 3569999998877777889999999999999999885 22222222 1
Q ss_pred hhc-----cCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 341 ADL-----YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 341 ~~~-----~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+.. .|+.. ..-.++.+|+.+++...|+.+..
T Consensus 211 E~vl~ivp~Gth~-~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 211 EIVLRIVPKGTHT-WEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHHhcCCCCcC-HHHcCCHHHHHHHHHhcCcchhh
Confidence 111 12111 12357999999999999998765
No 56
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.27 E-value=8.7e-11 Score=115.80 Aligned_cols=133 Identities=21% Similarity=0.159 Sum_probs=92.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.|+++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n-------------- 205 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----N-------------- 205 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4455555432 457999999999999999999997 799999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+ ...+.+..++.... ..++||+|+++.. +..+.+++..+.++|||||++|.
T Consensus 206 --------~~------------~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 206 --------QV------------SDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred --------CC------------CcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 00 01134444442221 1468999998764 34567899999999999999997
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|.+. -..++++..+++. |++++..
T Consensus 258 sgi~~----------------~~~~~v~~~~~~~-f~~~~~~ 282 (288)
T TIGR00406 258 SGILE----------------TQAQSVCDAYEQG-FTVVEIR 282 (288)
T ss_pred EeCcH----------------hHHHHHHHHHHcc-CceeeEe
Confidence 66431 2357888888775 9887643
No 57
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.27 E-value=9e-11 Score=113.15 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=89.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..|+-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555555432 5679999999999999999999986 99999999999766622110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.+. ..+.+..+ ..+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~~------------~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GVE------------LNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CCC------------ceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 00111111 127999987643 33467889999999999999996
Q ss_pred ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|.+ .-..+++...+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1245788999999999998744
No 58
>PRK06202 hypothetical protein; Provisional
Probab=99.27 E-value=8.8e-11 Score=111.24 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccc
Q 015160 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v 262 (412)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..|+-.. ..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---RR-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---cc--------------------------
Confidence 567999999999999999885 35 48999999999997665110 00
Q ss_pred ccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCcc
Q 015160 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 337 (412)
Q Consensus 263 ~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN-~--GPLl 337 (412)
.++.+..++...+.. ..++||+|++++.+...++ +...++.++++|| |+++|+ + +++.
T Consensus 111 -------------~~~~~~~~~~~~l~~---~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 111 -------------PGVTFRQAVSDELVA---EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred -------------CCCeEEEEecccccc---cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 012333343333321 2478999999886654443 5689999999998 777776 2 2222
Q ss_pred hhhhhc-----c-C---CCC-Cccc--CCCHHHHHHHHHhCCCEEEEEe
Q 015160 338 YHFADL-----Y-G---QED-EMSI--ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 338 yh~~~~-----~-g---~~~-~~~i--eLS~EEL~~ll~~~GFeii~e~ 374 (412)
|..... . + ..+ ..++ .++.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 211000 0 1 011 1122 4699999999999 99998765
No 59
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.27 E-value=5.2e-11 Score=115.97 Aligned_cols=145 Identities=19% Similarity=0.222 Sum_probs=104.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcc
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr 260 (412)
.+.+|||.|||||-+|+.|.+.- -.|++.|+|++||.++.. ++.+ +
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 56899999999999999997762 469999999999987661 1100 1
Q ss_pred ccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-------e
Q 015160 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-------L 333 (412)
Q Consensus 261 ~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-------~ 333 (412)
+++ ......++.||..++. +.+++||+.+..|=|-...++.+.|++.||+|||||+|.. .
T Consensus 154 ~l~----------~~~~~~w~~~dAE~Lp---Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDLP---FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccCC---CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 0123789999988874 4579999998888898888899999999999999999973 1
Q ss_pred cCcchhhhhc------------cCCCCC-----ccc--CCCHHHHHHHHHhCCCEEEE
Q 015160 334 GPLLYHFADL------------YGQEDE-----MSI--ELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 334 GPLlyh~~~~------------~g~~~~-----~~i--eLS~EEL~~ll~~~GFeii~ 372 (412)
-|+.|-+..- +|.... -++ .++.||++.+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 2333321110 011100 012 24899999999999998875
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=5.4e-11 Score=123.95 Aligned_cols=141 Identities=15% Similarity=0.091 Sum_probs=96.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998543310 00
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh--hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
...++.++.+|+.+... +...++||+|++.+.+... ..+.+.++.++++|||||+++-.-.. ++...+...
T Consensus 81 -----~~~~i~~~~~d~~~~~~-~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPDL-NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEeccccccc-CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 01236788888864221 2235789999987644322 33789999999999999999853211 111100000
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.-..+.-.+..++++++.+.||..+.
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113446788999999999998775
No 61
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.27 E-value=1.9e-10 Score=106.29 Aligned_cols=147 Identities=17% Similarity=0.176 Sum_probs=95.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
++++.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++ +.
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~-------~~---------------- 55 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACV-------AR---------------- 55 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHH-------Hc----------------
Confidence 344555554 3468999999999999999865 568899999999986443 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE-E
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI-N 332 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI-N 332 (412)
++.++.+|+.+... +...++||+|++...+...+|....++++.+.+|++.+-+ |
T Consensus 56 -----------------------~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 56 -----------------------GVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred -----------------------CCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 13456677654211 1235789999998777777788899999999888643322 1
Q ss_pred ecCcc--hhhhhc-----cC-------CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 333 LGPLL--YHFADL-----YG-------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 333 ~GPLl--yh~~~~-----~g-------~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++... +.+... .+ ..+ ..-..+.+++.+++++.||++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 112 FGYWRVRWSILTKGRMPVTGELPYDWYNTP-NIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred hhHHHHHHHHHhCCccccCCCCCccccCCC-CcccCcHHHHHHHHHHCCCEEEEEE
Confidence 11100 000000 00 000 0124699999999999999999865
No 62
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.2e-10 Score=115.12 Aligned_cols=155 Identities=18% Similarity=0.236 Sum_probs=107.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.++.+.+.+.-+ ++.+|||+|||-|.++...|++ |-.|+|+++|..|+..++-.+ .+.
T Consensus 60 k~~~~~~kl~L~---~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~~--------------- 118 (283)
T COG2230 60 KLDLILEKLGLK---PGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AAR--------------- 118 (283)
T ss_pred HHHHHHHhcCCC---CCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HHc---------------
Confidence 556666655433 7899999999999999999999 899999999999987655211 000
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC-ChhhHHHHHHHHHHhccCCcEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID-ta~Ni~~yl~~I~~~LKPGG~w 330 (412)
....++.+...|..++. +.||.||+.= |=. ..+|..+||+.++++|+|||..
T Consensus 119 --------------------gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 119 --------------------GLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred --------------------CCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 11124677788888763 4599999973 211 2367899999999999999999
Q ss_pred EE--e-cCcc-h-hhhhcc--CCCCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 331 IN--L-GPLL-Y-HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 331 IN--~-GPLl-y-h~~~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
+. + +|-. + .+.+-. -.-| ...-.|..++.....+.||.+......
T Consensus 173 llh~I~~~~~~~~~~~~~i~~yiFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~ 224 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKYIFP-GGELPSISEILELASEAGFVVLDVESL 224 (283)
T ss_pred EEEEecCCCcccccchHHHHHhCCC-CCcCCCHHHHHHHHHhcCcEEehHhhh
Confidence 86 2 2210 0 111000 0001 133458999999999999999886543
No 63
>PRK14968 putative methyltransferase; Provisional
Probab=99.24 E-value=3.2e-10 Score=102.27 Aligned_cols=129 Identities=19% Similarity=0.282 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..|+++|.+|+|+|+|..|+..++..+... .+.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------------------~~~----- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN--------------------------NIR----- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc--------------------------CCC-----
Confidence 4568999999999999999999999999999999997665322110 000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccC--------------------ChhhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------------------TAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------------------ta~Ni~~yl~~I~~~LKPG 327 (412)
..++.+..+|+.+... .++||+|++.. |+. ....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0014567778766432 34799998652 221 1233567899999999999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|.++-.-+ -....+++..++.+.||+++...
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98874211 01235789999999999987644
No 64
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.24 E-value=3.8e-10 Score=104.87 Aligned_cols=153 Identities=18% Similarity=0.141 Sum_probs=99.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++.++|++ +-.|+|+|+|..|+..++...+..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------------------------------- 88 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------------------------------- 88 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh-------------------------------
Confidence 5679999999999999999875 357999999999997765222110
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
....++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||+++-.-+.
T Consensus 89 -------g~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~--------- 147 (198)
T PRK00377 89 -------GVLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAIL--------- 147 (198)
T ss_pred -------CCCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEeec---------
Confidence 001236678888876432 12368999987542 245678999999999999999831110
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe-eccccCCCCcccccccccceEEE-EEEE
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFW-TMRK 401 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~-VarK 401 (412)
.-+.+++..++++.||..+..+ .+..++.......+... +++|. +.+|
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-npv~~~~~~~ 197 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITEVIIAKGMKTKVGTAMMTR-NPIFIISGEK 197 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEEEehhhcccccCCcEeecC-CCEEEEEEec
Confidence 1135788888999999765543 34444433332233333 44443 3444
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.22 E-value=2.7e-10 Score=95.46 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 3469999999999999999997 358999999999997666322110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.++.++.+|..+... ...++||+|++..-. ....++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 124566677554211 123689999875422 2356899999999999999984
No 66
>PRK14967 putative methyltransferase; Provisional
Probab=99.22 E-value=2.9e-10 Score=107.53 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++-.+... .
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------~------ 83 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------G------ 83 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh--------------------------C------
Confidence 456999999999999999999998 8999999999997665221100 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh-------------------hhHHHHHHHHHHhccC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 326 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta-------------------~Ni~~yl~~I~~~LKP 326 (412)
.++.+..+|+.+... .++||+|++. |+-... ..+..+++.+.++|||
T Consensus 84 --------~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 84 --------VDVDVRRGDWARAVE----FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred --------CeeEEEECchhhhcc----CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 014567788876422 4689999986 332111 1245678899999999
Q ss_pred CcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 327 GG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
||+++-+ +- . ....+++..++++.||.+...
T Consensus 152 gG~l~~~-----~~----------~-~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLV-----QS----------E-LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEE-----Ee----------c-ccCHHHHHHHHHHCCCCeEEE
Confidence 9999831 10 0 124567778888888876653
No 67
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=9.8e-11 Score=98.20 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=77.3
Q ss_pred CeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
.+|||||||+|+++..++++| ..++|+|+++..+..++..+...
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~----------------------------------- 46 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN----------------------------------- 46 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC-----------------------------------
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc-----------------------------------
Confidence 589999999999999999999 89999999999998777443210
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------hhHHHHHHHHHHhccCCcEEEEe
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
....++.++.+|+.++.. +...++||+|+++- |.... ....+.++.+.++|||||+++-+
T Consensus 47 ---~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 47 ---GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp ---TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 011247899999998751 12368999999873 44321 12357899999999999999853
No 68
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=107.45 Aligned_cols=151 Identities=20% Similarity=0.337 Sum_probs=102.5
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 235 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~filn~~~ 235 (412)
|-.+..+|| |+++|..+..... .....+|||+|||.|.+.+.||+.||. .+|+|+|...+..|.-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 766767777 6777776553100 113349999999999999999999996 5999999999977765543211
Q ss_pred ccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec--cc--C
Q 015160 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF--FI--D 308 (412)
Q Consensus 236 ~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F--FI--D 308 (412)
. .+.++|-+.|+++-- +..++||+|.- .= -| |
T Consensus 116 ~--------------------------------------~n~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F--------------------------------------SNEIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C--------------------------------------CcceeEEEeeccCCc---ccccceeEEeecCceeeeecCCC
Confidence 1 112556666665421 12356666652 10 11 2
Q ss_pred Ch-hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 309 TA-HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 309 ta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.+ .-+.-|+..+.++|+|||+|+-. +-..+.+||.+.++..||++..+
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEe
Confidence 11 12357999999999999999841 44689999999999999988764
No 69
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.16 E-value=3e-10 Score=113.72 Aligned_cols=123 Identities=21% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||||||+|.++.+.+..|..|+|+|++..|+..++..++.. + +
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~--------------------------g--~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY--------------------------G--I---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh--------------------------C--C----
Confidence 5678999999999999999999999999999999997665322110 0 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--ccc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFI----D--ta-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
.++.+..+|+.++.. ..+.||+|++. |-. . .. ....+.++.++++|||||.++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~~---~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLPL---SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCCc---ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 114678899988643 25789999986 211 1 11 2246889999999999999875322
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+..++..+++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244467889999 7653
No 70
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=2.4e-10 Score=107.06 Aligned_cols=127 Identities=20% Similarity=0.116 Sum_probs=86.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..||++ +..|+|+|+|..|+..++..+.. .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~----~---------------------------- 87 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEE----E---------------------------- 87 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHH----c----------------------------
Confidence 3568999999999999999987 45799999999999766522110 0
Q ss_pred CCCCCCCCCCceeEEeccc-ccccCCCCCCCCccEEEEeccc---CChh-----hHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF-~ely~~~~~~~~fD~VvT~FFI---Dta~-----Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
. ..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-..+
T Consensus 88 ------~-~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 88 ------G-LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred ------C-CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 0 02367888998 44321 0125789999876521 1111 146789999999999999984221
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 371 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii 371 (412)
..--.+++...+++.||...
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccc
Confidence 11223567778888898766
No 71
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.15 E-value=1.1e-09 Score=103.57 Aligned_cols=137 Identities=18% Similarity=0.177 Sum_probs=93.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+++.+.+.++. .+.+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444431 3458999999999999999987 678999999999997766332100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------h--------------
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 310 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------a-------------- 310 (412)
. ..++.+..+|+.+... .++||+|+++. |+.. .
T Consensus 135 ---------~-------------~~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G-------------LDNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C-------------CCeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 0136788899877432 47899999863 2211 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 311 -----~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEEE
Confidence 11235688999999999998731 00 1234789999999999876543
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.13 E-value=2.7e-09 Score=102.38 Aligned_cols=136 Identities=18% Similarity=0.080 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~------------------------------ 118 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEE------------------------------ 118 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhh------------------------------
Confidence 66799999999999999999872 48999999999985322 11100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
..++.++.+|..+........+.||+|+.. +.........++.++++|||||.++-. +-|.-.+ ...
T Consensus 119 --------~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 119 --------RKNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred --------cCCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 012455677765421000112569999743 222222345689999999999999853 1121111 011
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+ -... ++..+.++++||++++..
T Consensus 186 ~~---~~~~-~~~~~~l~~aGF~~i~~~ 209 (226)
T PRK04266 186 DP---KEIF-KEEIRKLEEGGFEILEVV 209 (226)
T ss_pred CH---HHHH-HHHHHHHHHcCCeEEEEE
Confidence 11 1223 445588989999998755
No 73
>PHA03411 putative methyltransferase; Provisional
Probab=99.11 E-value=7.9e-10 Score=109.22 Aligned_cols=133 Identities=16% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..++++ +.+|+|+|+|..|+..++..+ |
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~---------------------------------~-- 109 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL---------------------------------P-- 109 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---------------------------------c--
Confidence 468999999999999999876 579999999999986654110 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh---hh---------------HHHHHHHHHHhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKDG 327 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta---~N---------------i~~yl~~I~~~LKPG 327 (412)
++.++.+|++++.. .++||+|++. |+.... .+ +.+.++.+..+|||+
T Consensus 110 ---------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~ 176 (279)
T PHA03411 110 ---------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPT 176 (279)
T ss_pred ---------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCC
Confidence 14678899988642 3689999985 553211 12 235567777888999
Q ss_pred cEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccC
Q 015160 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (412)
Q Consensus 328 G~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y 380 (412)
|..+-. |.- .|-..-.|+.+|++.+++..||...--=.+++.|
T Consensus 177 G~~~~~----yss------~~~y~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~ 219 (279)
T PHA03411 177 GSAGFA----YSG------RPYYDGTMKSNKYLKWSKQTGLVTYAGCGIDTSI 219 (279)
T ss_pred ceEEEE----Eec------cccccccCCHHHHHHHHHhcCcEecCCCCcccce
Confidence 965531 211 1111235999999999999999886544455444
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.11 E-value=2.8e-09 Score=105.28 Aligned_cols=140 Identities=12% Similarity=0.038 Sum_probs=91.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|||+|.++..++++. ..++++|+ +.|+..++..+. +.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EK----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hC-----------------------------
Confidence 45799999999999999999994 67999998 678865542111 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcc-------
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 337 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLl------- 337 (412)
...++++++.+||.+... ..+|+|+...++. ..+.....|+++++.|||||.++-.-.+.
T Consensus 196 ------gl~~rv~~~~~d~~~~~~-----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKESY-----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred ------CccceEEEEecCccCCCC-----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 112347899999986321 2369988776554 23345789999999999999997532111
Q ss_pred ----hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 338 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 338 ----yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+++-...+......-..+.+|++++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998764
No 75
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.10 E-value=5.4e-10 Score=109.16 Aligned_cols=121 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhhhhccccccccc------ccccccccCC
Q 015160 189 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWN------IYPWIHSNCN 251 (412)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~-------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~------I~P~i~~~sn 251 (412)
++.+||++|||+|. +|..|++. ++.|+|+|+|..||..|+--. -...... +..|.....+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~---y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI---YPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC---CCHHHHhcCCHHHHhhhEEeCCC
Confidence 45799999999997 45555553 478999999999998776211 0000000 0001000000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCc
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG 328 (412)
...+.+ ....++.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|||||
T Consensus 176 ---------~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L~pGG 236 (264)
T smart00138 176 ---------KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEALKPGG 236 (264)
T ss_pred ---------eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHhCCCe
Confidence 011100 122358899999988542 257899999854 344 3457799999999999999
Q ss_pred EEE
Q 015160 329 VWI 331 (412)
Q Consensus 329 ~wI 331 (412)
+++
T Consensus 237 ~L~ 239 (264)
T smart00138 237 YLF 239 (264)
T ss_pred EEE
Confidence 998
No 76
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.09 E-value=1e-09 Score=103.36 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|+++..|++. |..++|+|+|..|+..|+-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999766510 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
++.+..+|+.+. ...++||+|++... ++ ..++.+++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567887762 23679999998753 43 3568899999999983 4444
No 77
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.08 E-value=5e-10 Score=105.61 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=90.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..|+--+..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~----------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG----------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-----------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC-----------------------------------
Confidence 345899999999999999999998999999999999776622210
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g 345 (412)
..++++.++|+.+... .++||+||.. |||+..+++..+++.+...|+|||.+|- | |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~-g----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVF-G----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEE-E----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEE-E----EecCCcc
Confidence 1237889999887643 5899998854 7899888899999999999999999994 1 3322200
Q ss_pred -CCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 346 -QEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 346 -~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.. ......|.|.+++.+. |..++
T Consensus 153 ~~w---gh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RRW---GHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HHT---T-S--HHHHHHHHHHH-SEEEE
T ss_pred ccc---CcccchHHHHHHHHHH-hhhee
Confidence 01 1346899999999875 55554
No 78
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.08 E-value=1.5e-09 Score=108.35 Aligned_cols=151 Identities=17% Similarity=0.138 Sum_probs=97.9
Q ss_pred HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCc
Q 015160 177 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSD 255 (412)
Q Consensus 177 ~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~ 255 (412)
.|..++++- .+.+|||+|||.|..+++++.+|.. |.|+|-+..-+.-..++-.......
T Consensus 106 rl~p~l~~L---~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~----------------- 165 (315)
T PF08003_consen 106 RLLPHLPDL---KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP----------------- 165 (315)
T ss_pred HHHhhhCCc---CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCc-----------------
Confidence 355555433 6789999999999999999999985 9999999866554443322110000
Q ss_pred ccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE---
Q 015160 256 SDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--- 332 (412)
Q Consensus 256 ~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--- 332 (412)
. ..++---+.++ |. .+.||+|++.=.|=.-.+..+.|+.+...|||||.+|-
T Consensus 166 -----~----------------~~~lplgvE~L---p~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 166 -----P----------------VFELPLGVEDL---PN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred -----c----------------EEEcCcchhhc---cc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEe
Confidence 0 11110011122 22 57899999875554556788999999999999999982
Q ss_pred --ecCcchh--hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 333 --LGPLLYH--FADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 333 --~GPLlyh--~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-|+.-.. -++.+...++..+-.|..-|+..++++||+.++
T Consensus 221 vi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~ 264 (315)
T PF08003_consen 221 VIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVR 264 (315)
T ss_pred eecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEE
Confidence 1221111 011122223334556999999999999999887
No 79
>PTZ00146 fibrillarin; Provisional
Probab=99.05 E-value=4.1e-09 Score=104.95 Aligned_cols=165 Identities=16% Similarity=0.083 Sum_probs=96.9
Q ss_pred HhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhh
Q 015160 156 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 156 ~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn 232 (412)
+|.|..- |. .+-..|..-+....-.++.+|||+|||+|.++..||+.- =.|+|+|+|..|+. -+++
T Consensus 107 yR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~---dLl~ 175 (293)
T PTZ00146 107 YRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR---DLTN 175 (293)
T ss_pred eeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH---HHHH
Confidence 8899864 22 233344333332222367799999999999999999872 37999999987651 1111
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCCh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (412)
.+.+. .|+.++.+|++.. |.. ..+.||+|+.... ..
T Consensus 176 ~ak~r--------------------------------------~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~p 213 (293)
T PTZ00146 176 MAKKR--------------------------------------PNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--QP 213 (293)
T ss_pred Hhhhc--------------------------------------CCCEEEECCccChhhhhc--ccCCCCEEEEeCC--Cc
Confidence 11100 1245566776542 211 1357999976543 12
Q ss_pred hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-cCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCC
Q 015160 311 HNIVEYIEIISRILKDGGVWINLGPLLYHFADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (412)
Q Consensus 311 ~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~-~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~ 382 (412)
.+...++.+++++|||||.+|- .|..... .+.++ ..-++ +|+ +.|++.||++++... ..+|..
T Consensus 214 dq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~p--e~~f~-~ev-~~L~~~GF~~~e~v~-L~Py~~ 277 (293)
T PTZ00146 214 DQARIVALNAQYFLKNGGHFII----SIKANCIDSTAKP--EVVFA-SEV-QKLKKEGLKPKEQLT-LEPFER 277 (293)
T ss_pred chHHHHHHHHHHhccCCCEEEE----EEeccccccCCCH--HHHHH-HHH-HHHHHcCCceEEEEe-cCCccC
Confidence 2344567789999999999984 2322211 11111 11133 445 778899999886553 344544
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.04 E-value=1.3e-08 Score=94.16 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++.++|+. +..|+|+|+|..|+..++-.++. + .
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~------~--------------------~----- 88 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDR------F--------------------G----- 88 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH------h--------------------C-----
Confidence 5679999999999999999875 47899999999998766522110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||+++-
T Consensus 89 --------~~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 89 --------VKNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred --------CCCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 0126677788765322 1123457653 23344577999999999999999985
No 81
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.03 E-value=2.6e-09 Score=100.88 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..+++++ ..|+|+|++. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 46699999999999999998874 4799999998 41 0 01
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec---ccCC-hhh-------HHHHHHHHHHhccCCcE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF---FIDT-AHN-------IVEYIEIISRILKDGGV 329 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~F---FIDt-a~N-------i~~yl~~I~~~LKPGG~ 329 (412)
++.+++||+++... .+...+.||+|++.. +... ..+ +...|+.++++|||||+
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 14678888887420 011257899999854 2111 111 24689999999999999
Q ss_pred EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEE
Q 015160 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRK 401 (412)
Q Consensus 330 wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK 401 (412)
++-. .|. .-...++...+++ +|+.++.....++-..+ .-.|+||+.
T Consensus 161 ~vi~---~~~-------------~~~~~~~l~~l~~-~f~~v~~~Kp~ssr~~s---------~e~~~~~~~ 206 (209)
T PRK11188 161 FVVK---VFQ-------------GEGFDEYLREIRS-LFTKVKVRKPDSSRARS---------REVYIVATG 206 (209)
T ss_pred EEEE---Eec-------------CcCHHHHHHHHHh-CceEEEEECCccccccC---------ceeEEEeec
Confidence 9851 121 1233445555533 68877654433333322 356777764
No 82
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.03 E-value=3.6e-09 Score=99.18 Aligned_cols=110 Identities=18% Similarity=0.135 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..+.+.+.. .++.+|||+|||+|+++..|+++ +-.|+|+|+|..|+..++-.++..
T Consensus 59 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------------- 120 (205)
T PRK13944 59 HMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------------- 120 (205)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---------------
Confidence 345555555432 25579999999999999999875 358999999999987665222110
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcE
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~ 329 (412)
....++++..+|+.+... ..+.||+|+...-+. .+.+.+.+.|||||+
T Consensus 121 -----------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG~ 168 (205)
T PRK13944 121 -----------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAS------TIPSALVRQLKDGGV 168 (205)
T ss_pred -----------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcc------hhhHHHHHhcCcCcE
Confidence 001236788899877532 246899998765433 233578899999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
+|-
T Consensus 169 lvi 171 (205)
T PRK13944 169 LVI 171 (205)
T ss_pred EEE
Confidence 974
No 83
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.03 E-value=6.7e-09 Score=101.22 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=110.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4679999999999999999999 6 6899999999998766622211 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC----------------hhhHHHHHHHHHHhccCCc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----------------AHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----------------a~Ni~~yl~~I~~~LKPGG 328 (412)
...++++++++|+.++.. .....+||+|+++ ||-.. .-++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 123458999999998764 2334579999987 65221 1247788999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
.+.-+-| .....||..++.+++|+..+...+...=...+ +.+...++|...
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V~p~~~k~A--------~~vLv~~~k~~~ 215 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFVYPKIGKAA--------NRVLVEAIKGGK 215 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEecCCCCCcc--------eEEEEEEecCCC
Confidence 9974311 13567899999999999988765554444444 344556677643
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.02 E-value=9.5e-09 Score=101.45 Aligned_cols=124 Identities=13% Similarity=0.177 Sum_probs=87.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..||++ +..|+|+|+|..|+..|+.-.+. +
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~----~----------------------------- 168 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIER----H----------------------------- 168 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999987 56899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISR 322 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yl~~I~~ 322 (412)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.+
T Consensus 169 -----~~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~ 239 (284)
T TIGR03533 169 -----GLEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAAD 239 (284)
T ss_pred -----CCCCcEEEEECchhhccC----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 001237889999876332 35799999861 2111 0123466888889
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 323 ~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+|||||+++- + +..+.+++++++...||.....
T Consensus 240 ~L~~gG~l~~--------e----------~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 240 HLNENGVLVV--------E----------VGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred hcCCCCEEEE--------E----------ECcCHHHHHHHHHhCCCceeee
Confidence 9999999873 0 1124468999999999977653
No 85
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.02 E-value=3.4e-09 Score=99.74 Aligned_cols=108 Identities=15% Similarity=0.095 Sum_probs=76.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..|+..+...
T Consensus 65 ~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---------------- 125 (215)
T TIGR00080 65 MVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---------------- 125 (215)
T ss_pred HHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 44555554432 25679999999999999999998544 999999999998776333110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
. ..++.++.+|..+... ..+.||+|+..... ..+.+.+.+.|||||++
T Consensus 126 ----------g-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~l 173 (215)
T TIGR00080 126 ----------G-------------LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGIL 173 (215)
T ss_pred ----------C-------------CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcEE
Confidence 0 0236788899877542 24689999865322 23456788999999999
Q ss_pred EE
Q 015160 331 IN 332 (412)
Q Consensus 331 IN 332 (412)
|-
T Consensus 174 v~ 175 (215)
T TIGR00080 174 VM 175 (215)
T ss_pred EE
Confidence 84
No 86
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.02 E-value=9e-09 Score=99.08 Aligned_cols=124 Identities=23% Similarity=0.271 Sum_probs=87.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..+++.. ..|+|+|+|..|+..++..+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 45789999999999999999986 7899999999999776632210
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC-------------------------hhhHHHHHHHH
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 320 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-------------------------a~Ni~~yl~~I 320 (412)
....++.++.+|+.+... .++||+|++.. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPLP----GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcCC----CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 001236788888865321 47899999863 3321 12235678888
Q ss_pred HHhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 321 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 321 ~~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.++|||||+++- .|+ -..++++.++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999873 211 12467889999999985543
No 87
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.02 E-value=5e-09 Score=95.37 Aligned_cols=109 Identities=20% Similarity=0.274 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
-+++.+... +..+|||+|||+|-++..+++++-. |+++|+|..++..++.-+.. +
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n------------ 78 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----N------------ 78 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----T------------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----c------------
Confidence 456666654 3468999999999999999999876 99999999999877632210 0
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-----hhHHHHHHHHHHhcc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-----HNIVEYIEIISRILK 325 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta-----~Ni~~yl~~I~~~LK 325 (412)
.. +++.++.+|+.+-.. .++||+|+++--+... .-+.+.++...++||
T Consensus 79 ----------------------~~-~~v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 79 ----------------------GL-ENVEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp ----------------------TC-TTEEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred ----------------------Cc-ccccccccccccccc----ccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 00 116778888776432 5899999998522222 235678999999999
Q ss_pred CCcEEE
Q 015160 326 DGGVWI 331 (412)
Q Consensus 326 PGG~wI 331 (412)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999886
No 88
>PRK06922 hypothetical protein; Provisional
Probab=99.01 E-value=1.5e-09 Score=117.64 Aligned_cols=104 Identities=17% Similarity=0.114 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+..
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~--------------------------------- 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN--------------------------------- 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh---------------------------------
Confidence 4569999999999999999875 57999999999999765511100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-------------ta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
...++.++.+|+.++.. ....++||+|++++.++ ...++...|+.++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 00125678888877531 12357899999875332 2346789999999999999999963
No 89
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.99 E-value=1.9e-09 Score=100.19 Aligned_cols=129 Identities=22% Similarity=0.247 Sum_probs=85.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
...+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+...
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~-------------------------------- 63 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL-------------------------------- 63 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------------
Confidence 3468999999999999999998 568999999999997665221100
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc---CChh--h---HHHHHHHHHHhccCCcEEEEecCcch
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAH--N---IVEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI---Dta~--N---i~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
. ..++.++.+|+.++.......+.+|.|+..|=. ...+ + ..+.++.++++|||||.++-...
T Consensus 64 ------~-l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td--- 133 (194)
T TIGR00091 64 ------G-LKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD--- 133 (194)
T ss_pred ------C-CCCEEEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC---
Confidence 0 024788999987653110124689999876521 1110 0 14789999999999999974211
Q ss_pred hhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEE
Q 015160 339 HFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 372 (412)
Q Consensus 339 h~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~ 372 (412)
...-.+++..++.+.| |+.+.
T Consensus 134 -------------~~~~~~~~~~~~~~~~~f~~~~ 155 (194)
T TIGR00091 134 -------------NEPLFEDMLKVLSENDLFENTS 155 (194)
T ss_pred -------------CHHHHHHHHHHHHhCCCeEecc
Confidence 1123455566666555 87765
No 90
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=7.7e-09 Score=97.65 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=78.5
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
..+.+...+.+.+.. .++.+|||+|||+|.++..|++.. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 334455555555432 256799999999999999998873 58999999999998776333210
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
...++.+..||+.+.+. ..+.||+|+....+. ++.+.+.+.|||
T Consensus 125 ---------------------------g~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 ---------------------------GYDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred ---------------------------CCCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 01237889999876543 247899997654332 234577889999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999985
No 91
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=7.3e-09 Score=80.98 Aligned_cols=100 Identities=21% Similarity=0.296 Sum_probs=75.5
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
+||++|||.|.++..+++ .+..++|+|.+..++..++.....
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------------------------------- 43 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA------------------------------------- 43 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-------------------------------------
Confidence 589999999999999998 667999999999998655421100
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
....++.+..+|+.+... ...++||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 44 --~~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 44 --LLADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred --ccccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 001126777888877532 12468999998876665 66788999999999999999973
No 92
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.95 E-value=7.3e-09 Score=106.51 Aligned_cols=115 Identities=15% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
..|.+++|.. ...+|||+|||+|.++..+++++ ..|+++|.|+.|+..|+.-+.. +.
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~-------------- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM-------------- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC--------------
Confidence 3455566643 34599999999999999999984 7899999999999877622210 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC---ChhhHHHHHHHHHHhccCCc
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID---ta~Ni~~yl~~I~~~LKPGG 328 (412)
+ ....++.+..+|+.+... .++||+|+++ |... +.....+.|+.++++|||||
T Consensus 277 -----------~-------~~~~~v~~~~~D~l~~~~----~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------P-------EALDRCEFMINNALSGVE----PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------c-------ccCceEEEEEccccccCC----CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 0 001136778888765321 3589999996 4321 22234678999999999999
Q ss_pred EEEEe
Q 015160 329 VWINL 333 (412)
Q Consensus 329 ~wIN~ 333 (412)
.++-+
T Consensus 335 ~L~iV 339 (378)
T PRK15001 335 ELYIV 339 (378)
T ss_pred EEEEE
Confidence 98854
No 93
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.95 E-value=3.1e-09 Score=104.03 Aligned_cols=221 Identities=20% Similarity=0.222 Sum_probs=114.4
Q ss_pred HHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 150 CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 150 s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.=|...++.=+..-. | +......+..|.+.|.... .++.++||+|||.--.-..-|..=| .++..|++..=+..-+
T Consensus 20 ~Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~ 96 (256)
T PF01234_consen 20 AYLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELE 96 (256)
T ss_dssp HHHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHH
T ss_pred HHHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHH
Confidence 345555543333222 2 2244456666766665332 2567999999998555333344445 5899999987664322
Q ss_pred hhhhcccccccccccccccccCCCCC-------cccCccccccCCCCCCCCCCCCceeEEecccccccCCCC---CCCCc
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS---QVGAW 298 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s-------~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~---~~~~f 298 (412)
.=|+.. .+-.| -|++-.-++... .+.++|.. | =..+..|.+.....+. ...+|
T Consensus 97 kWl~~~-~a~DW--s~~~~~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~~~ 159 (256)
T PF01234_consen 97 KWLRKE-GAFDW--SPFWKYVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPPKF 159 (256)
T ss_dssp HHHTT--TS--T--HHHHHHHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-SSE
T ss_pred HHHCCC-CCCCc--cHHHHHHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCccch
Confidence 223222 22222 132222221111 11112110 0 1355567665322111 12369
Q ss_pred cEEEEecccCCh-hhHHHH---HHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 299 DAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 299 D~VvT~FFIDta-~Ni~~y---l~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+|+|+|+|+.+ +++.+| ++.|.++|||||.+|-.|-|--.+.. .|+.....+.|+.+.|++.++++||+|+..+
T Consensus 160 D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 160 DCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred hhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence 999999998755 455555 77788899999999976555322221 2333233678999999999999999999866
Q ss_pred eccccCCCCcccccccccceEEE-EEEE
Q 015160 375 TIETTYTTNPRSMMQNRYFTAFW-TMRK 401 (412)
Q Consensus 375 ~i~s~Y~~d~~sm~~~~Y~~~f~-VarK 401 (412)
. ......|...|| ||||
T Consensus 239 ~----------~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 239 K----------QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp G-----------TTTB---EEEEEEEEE
T ss_pred c----------ccCcCCCCcEEEEEEeC
Confidence 1 122344555565 7887
No 94
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.95 E-value=2.5e-08 Score=103.72 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..... .
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~----------------------------- 298 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L----------------------------- 298 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 458999999999999999975 57899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCChh------------------------hHHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAH------------------------NIVEYIEIISR 322 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~------------------------Ni~~yl~~I~~ 322 (412)
..++.+..+|+.+... + ..++||+|+++= |+.+.. -+.+.++.+.+
T Consensus 299 -------g~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~ 369 (423)
T PRK14966 299 -------GARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPD 369 (423)
T ss_pred -------CCcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHH
Confidence 0126788899876321 1 135799999863 433211 12345666678
Q ss_pred hccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 323 ILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 323 ~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.|||||.++- +|. --.+++++++++.||..++..
T Consensus 370 ~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 370 RLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred hcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 9999999763 211 125689999999999876543
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.92 E-value=1.5e-08 Score=94.76 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
.+...+...+.. .++.+|||+|||+|.++..|++.+..|+|+|.|..|+..++-.+...
T Consensus 65 ~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~------------------ 123 (212)
T PRK00312 65 YMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL------------------ 123 (212)
T ss_pred HHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC------------------
Confidence 344455544432 25679999999999999999999779999999999987666332110
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ..++.+..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|-
T Consensus 124 --------~-------------~~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~ 173 (212)
T PRK00312 124 --------G-------------LHNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILVA 173 (212)
T ss_pred --------C-------------CCceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEE
Confidence 0 0126788888765432 24789999865422 2335677899999999984
No 96
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.92 E-value=2.7e-08 Score=96.58 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=85.4
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..++++ |..|+|+|+|..|+..++.-++.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~---------------------------------- 132 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD---------------------------------- 132 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----------------------------------
Confidence 358999999999999999876 67899999999999877632210
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yl~~I~ 321 (412)
.+..++.+|+.+.... ...++||+|+++- |+.+. .-+.+.++.+.
T Consensus 133 --------~~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 133 --------AGGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred --------cCCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 0024577787653210 1135799999873 33221 01346677778
Q ss_pred HhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 322 ~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
++|||||+++-. ++ .-..+++..++++.||+.....
T Consensus 204 ~~L~~gG~l~l~----~~-------------~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 204 DWLAPGGHLLVE----TS-------------ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred HhcCCCCEEEEE----EC-------------cchHHHHHHHHHHCCCCceeeE
Confidence 999999998831 11 0124689999999999876654
No 97
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=1.5e-08 Score=101.16 Aligned_cols=136 Identities=29% Similarity=0.298 Sum_probs=95.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
-.+++|+++.. ++.+|||+|||+|-|++..+++|.. |.|+|+.+..+.+|+- |.. .|
T Consensus 151 lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~--~N------------- 208 (300)
T COG2264 151 LCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NAR--LN------------- 208 (300)
T ss_pred HHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHH--Hc-------------
Confidence 45677777653 6789999999999999999999986 9999999999988772 211 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+. .. ......+-.+.. ..+.||+||.+- .|+=+......++++|||||++|
T Consensus 209 ---------~v~--~~----------~~~~~~~~~~~~----~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lI 260 (300)
T COG2264 209 ---------GVE--LL----------VQAKGFLLLEVP----ENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLI 260 (300)
T ss_pred ---------CCc--hh----------hhcccccchhhc----ccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEE
Confidence 000 00 000011111111 136899999876 34446789999999999999999
Q ss_pred EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
--|=| .=-.+.+++.+++.||+++...
T Consensus 261 lSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 261 LSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 76621 1126788899999999998854
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.91 E-value=5.6e-09 Score=104.11 Aligned_cols=132 Identities=24% Similarity=0.285 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
-.++.|+++.. ++.+|||+|||+|-|+.--+++|. .|.|+|+++..+..|+.-.. .|
T Consensus 150 lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N------------- 207 (295)
T PF06325_consen 150 LCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LN------------- 207 (295)
T ss_dssp HHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HT-------------
T ss_pred HHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----Hc-------------
Confidence 46777777643 557999999999999999999998 59999999999877662211 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+. .++.. ....+. ..++||+|+.+-.-+. +...+..+.++|||||++|
T Consensus 208 ---------~~~------------~~~~v--~~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lI 256 (295)
T PF06325_consen 208 ---------GVE------------DRIEV--SLSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLI 256 (295)
T ss_dssp ---------T-T------------TCEEE--SCTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEE
T ss_pred ---------CCC------------eeEEE--EEeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEE
Confidence 000 11211 111121 1378999998766443 5678889999999999999
Q ss_pred EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 332 N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
--|=| .=-.+++++.+++ ||++++..
T Consensus 257 lSGIl----------------~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 257 LSGIL----------------EEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEE----------------GGGHHHHHHHHHT-TEEEEEEE
T ss_pred Ecccc----------------HHHHHHHHHHHHC-CCEEEEEE
Confidence 65522 2245788888877 99998754
No 99
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.91 E-value=1.4e-08 Score=103.04 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=73.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..+++++ ..|+++|+|..||..|+..+.. + .+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n----------------------~l----- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----N----------------------GL----- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC-----
Confidence 4589999999999999999985 4899999999999877633211 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCC-hhhHHHHHHHHHHhccCCcEEEEec
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDt-a~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
...+..+|+.+. ..+.||+|++.. | +++ .....+.|+.+.++|||||.++-++
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 024456676542 146899999874 2 233 3456789999999999999997543
No 100
>PHA03412 putative methyltransferase; Provisional
Probab=98.90 E-value=1.2e-08 Score=98.99 Aligned_cols=140 Identities=18% Similarity=0.157 Sum_probs=92.2
Q ss_pred CCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 190 PPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------------------------------- 96 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------------------------------- 96 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------------------------------
Confidence 569999999999999999874 358999999999997766211
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCChh---------h-HHHHHHHHHHhccCCcEEE-
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI- 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~---------N-i~~yl~~I~~~LKPGG~wI- 331 (412)
| ++.+..+|+..... .++||+||++ |+..... . ....++.+.++|+||+..|
T Consensus 97 ~-----------~~~~~~~D~~~~~~----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP 161 (241)
T PHA03412 97 P-----------EATWINADALTTEF----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIP 161 (241)
T ss_pred c-----------CCEEEEcchhcccc----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeC
Confidence 0 14567788876422 4689999998 5522211 1 3457888889888888644
Q ss_pred -EecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCC
Q 015160 332 -NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (412)
Q Consensus 332 -N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~ 381 (412)
++.+.-|.+...+.. .-..+-.+++...++.|....--=.|++.|-
T Consensus 162 ~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T PHA03412 162 QMSANFRYSGTHYFRQ----DESTTSSKCKKFLDETGLEMNPGCGIDTGYY 208 (241)
T ss_pred cccccCcccCccceee----ccCcccHHHHHHHHhcCeeecCCCCccceee
Confidence 344444432111100 1135667888899999987755445665553
No 101
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.88 E-value=5.9e-08 Score=97.03 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=85.3
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+.. .
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~----~------------------------------ 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIER----H------------------------------ 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h------------------------------
Confidence 58999999999999999987 46899999999999877632210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCC------------------------hhhHHHHHHHHHHh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yl~~I~~~ 323 (412)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 001237889999876322 35799999861 2211 01234678888999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 324 LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|||||+++- +| .+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~E~g-------------------~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVVEVG-------------------NSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEEEEC-------------------cCHHHHHHHHhhCCCEEEE
Confidence 999999873 21 1345688888888886654
No 102
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.88 E-value=7.6e-08 Score=94.66 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=85.5
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+|||+|||+|.++..||+.+ ..|+|+|+|..|+..++..... .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999877732210 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRI 323 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yl~~I~~~ 323 (412)
....++.++.+|+.+... .++||+|+++= |+... ..+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 001237789999876322 24799999862 22211 1355788999999
Q ss_pred ccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHH-hCCCEEEEE
Q 015160 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (412)
Q Consensus 324 LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~-~~GFeii~e 373 (412)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 332 12356777777 468865543
No 103
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.86 E-value=1.2e-08 Score=97.06 Aligned_cols=103 Identities=17% Similarity=0.100 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+..||++|||||+.--..- +.|-.||++|-++.|-.++..- +.++ ++
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks---~~E~----------------------k~------ 124 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKS---AAEK----------------------KP------ 124 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHH---Hhhc----------------------cC------
Confidence 45678999999999844332 4789999999999998665511 1111 11
Q ss_pred CCCCCCCCCce-eEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 268 HPASAGITEGF-SMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~-s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
.++ .|+.++-..+... .++++|+||..|.|-..++..+.|+++.++|||||++|-
T Consensus 125 --------~~~~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 125 --------LQVERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred --------cceEEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 123 3777777766532 368999999999998889999999999999999999984
No 104
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.84 E-value=5.9e-09 Score=99.81 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=89.1
Q ss_pred cCcc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 158 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 158 DWS~----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
+|+. ..+.||.. |..+.| .++|.. ...+|.|+|||+|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLl-a~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLL-ARVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHH-hhCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5665 45677775 444433 345543 5678999999999999999999 7889999999999976541
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChh
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (412)
..|| .+|..||..++.. ....|+++++--+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 1232 5788999998754 46799998875444344
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 015160 312 NIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 312 Ni~~yl~~I~~~LKPGG~wI 331 (412)
+-.+.|......|.|||++-
T Consensus 107 dH~~ll~rL~~~L~Pgg~LA 126 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLA 126 (257)
T ss_pred ccHHHHHHHHHhhCCCceEE
Confidence 45688999999999999997
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.82 E-value=6.2e-08 Score=103.04 Aligned_cols=124 Identities=18% Similarity=0.176 Sum_probs=86.3
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+|||+|||+|.++..+|+. +..|+|+|+|..|+..|+..... .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 57899999999999877632210 0
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh-------------------------hhHHHHHHHHH
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yl~~I~ 321 (412)
...+++.++.+|+.+... .++||+|+++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236788899876332 36899999852 22211 11334577888
Q ss_pred HhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 322 ~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++|||||.++- +| .-..+.+.+++.+.||..+..
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceEE
Confidence 99999999873 22 113568888999999986653
No 106
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.82 E-value=2.5e-08 Score=96.64 Aligned_cols=176 Identities=20% Similarity=0.330 Sum_probs=108.2
Q ss_pred HHHHHHhcCcccCh-------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeC
Q 015160 151 IIRNIVRDWAAEGK-------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEF 219 (412)
Q Consensus 151 ~L~q~~RDWS~eG~-------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~ 219 (412)
..+.-.+-|..-.. ..|. .++.+...+++.... ...+||++|||.|...+.|.+- +..|.+.|+
T Consensus 31 y~~~~~k~wD~fy~~~~~rFfkdR~----wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDf 105 (264)
T KOG2361|consen 31 YEREASKYWDTFYKIHENRFFKDRN----WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDF 105 (264)
T ss_pred hhcchhhhhhhhhhhccccccchhH----HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCC
Confidence 45555666765222 1343 455666666664322 2338999999999999999776 578999999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc--ccCCCCCCCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGA 297 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e--ly~~~~~~~~ 297 (412)
|+..+..-+ ++. .-.+-..++|+ -|++. +.. +-..++
T Consensus 106 sp~Ai~~vk---~~~-~~~e~~~~afv------------------------------------~Dlt~~~~~~-~~~~~s 144 (264)
T KOG2361|consen 106 SPRAIELVK---KSS-GYDESRVEAFV------------------------------------WDLTSPSLKE-PPEEGS 144 (264)
T ss_pred ChHHHHHHH---hcc-ccchhhhcccc------------------------------------eeccchhccC-CCCcCc
Confidence 998874322 111 00001111111 12221 111 223689
Q ss_pred ccEEEEecccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCcchhhhhc------------c-CCCCCcccCCCHHHHH
Q 015160 298 WDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADL------------Y-GQEDEMSIELSLEDVK 360 (412)
Q Consensus 298 fD~VvT~FFIDt--a~Ni~~yl~~I~~~LKPGG~wIN--~GPLlyh~~~~------------~-g~~~~~~ieLS~EEL~ 360 (412)
+|.|+..|.|-. .+.....|+.++++|||||.++- +|- |..+.. + .++....+.++.|||.
T Consensus 145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~--~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~ 222 (264)
T KOG2361|consen 145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR--YDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELD 222 (264)
T ss_pred cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc--chHHHHhccCCceeecceEEccCCceeeeccHHHHH
Confidence 999988776542 24577899999999999999984 221 221110 0 0112236889999999
Q ss_pred HHHHhCCCEEEEEe
Q 015160 361 RVALHYGFEFEKEK 374 (412)
Q Consensus 361 ~ll~~~GFeii~e~ 374 (412)
.+++++||..+...
T Consensus 223 ~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 223 ELFTKAGFEEVQLE 236 (264)
T ss_pred HHHHhcccchhccc
Confidence 99999999987643
No 107
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.82 E-value=8e-08 Score=91.26 Aligned_cols=157 Identities=20% Similarity=0.271 Sum_probs=102.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHH-HHHHhhhhcccccccccccccccc
Q 015160 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMM-ICSSFILNHTETAGEWNIYPWIHS 248 (412)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML-~~s~filn~~~~~~~~~I~P~i~~ 248 (412)
.||++.|+++++... .+||++|||||-++..+|+.= ..=|--|.....+ .+..++...
T Consensus 12 ~pIl~vL~~~l~~~~----~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~--------------- 72 (204)
T PF06080_consen 12 DPILEVLKQYLPDSG----TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA--------------- 72 (204)
T ss_pred hHHHHHHHHHhCccC----ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc---------------
Confidence 599999999998542 269999999999999999873 4445777777664 222222110
Q ss_pred cCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEeccc--CChhhHHHHHHHHH
Q 015160 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCFFI--DTAHNIVEYIEIIS 321 (412)
Q Consensus 249 ~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~FFI--Dta~Ni~~yl~~I~ 321 (412)
...+..+++. -|+.+-.- .+...+.||+|++...| -.-......|+...
T Consensus 73 -----~~~Nv~~P~~-------------------lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~ 128 (204)
T PF06080_consen 73 -----GLPNVRPPLA-------------------LDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAA 128 (204)
T ss_pred -----CCcccCCCeE-------------------eecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHH
Confidence 0011111211 12221100 00124689999998754 45566788999999
Q ss_pred HhccCCcEEEEecCcchhhhhc------c-----CCCCCcccCC-CHHHHHHHHHhCCCEEEEE
Q 015160 322 RILKDGGVWINLGPLLYHFADL------Y-----GQEDEMSIEL-SLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 322 ~~LKPGG~wIN~GPLlyh~~~~------~-----g~~~~~~ieL-S~EEL~~ll~~~GFeii~e 373 (412)
++|||||+++-.||..+.-.-. + ...| .+.+ ..|+|.+++.+.|+++++.
T Consensus 129 ~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 129 RLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred HhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCcc
Confidence 9999999999999987642110 0 1122 2333 7899999999999998764
No 108
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.81 E-value=8.2e-08 Score=90.39 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.||||+|||.|.|...|.+ ++-.++|+|++...+..+- +
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv-------~------------------------------- 54 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV-------A------------------------------- 54 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH-------H-------------------------------
Confidence 567999999999999888866 7999999999998864221 1
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc----
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL---- 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~---- 343 (412)
.+++.+++|+.+--. .+.+++||.|+-.--|....+..+.|+++.| -|..-|-.=|.+-||...
T Consensus 55 --------rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlR---Vgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 55 --------RGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEMLR---VGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred --------cCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHHHH---hcCeEEEEecChHHHHHHHHHH
Confidence 125678888765211 2447899999875555555666666666654 455555211222232221
Q ss_pred -cCC-------------CCCcccCCCHHHHHHHHHhCCCEEEEEeec
Q 015160 344 -YGQ-------------EDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (412)
Q Consensus 344 -~g~-------------~~~~~ieLS~EEL~~ll~~~GFeii~e~~i 376 (412)
.|. .|+.. .+|..|.+.+..+.|++|++....
T Consensus 123 ~~GrmPvt~~lPy~WYdTPNih-~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPNIH-LCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred hcCCCCCCCCCCCcccCCCCcc-cccHHHHHHHHHHCCCEEEEEEEE
Confidence 111 12111 359999999999999999987643
No 109
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=9.3e-09 Score=99.24 Aligned_cols=154 Identities=18% Similarity=0.148 Sum_probs=98.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-.++||+|||||-.+-.|-.+--+.+|+|+|..||..|. ++ .+|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eK---g~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EK---GLYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hc---cchH------------------------
Confidence 3569999999999999999998889999999999997554 11 1221
Q ss_pred CCCCCCCCceeEEecc---cccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---cCcchhhhh
Q 015160 269 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLLYHFAD 342 (412)
Q Consensus 269 p~~~~~~~~~s~~~GD---F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---GPLlyh~~~ 342 (412)
.+.++| |++.. ..+.||.|+..=.+.-.-++...+..+..+|+|||+|+-. +|--+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLEDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 44321 2578999986532222234556788889999999999841 111111110
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe-e-ccccCCCCcccccccccceEEEEEEEc
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-T-IETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~-~-i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
.|...+-=+..-+++++...||+++..+ + +... ...| -.-..+||||+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d-~g~p-------v~G~L~iark~ 286 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRD-AGEP-------VPGILVIARKK 286 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEeecccchhh-cCCC-------CCCceEEEecC
Confidence 1211233478889999999999999854 2 2221 1111 14567788886
No 110
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.79 E-value=3e-08 Score=91.23 Aligned_cols=94 Identities=17% Similarity=0.125 Sum_probs=63.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 677999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCceeEEecccccccC-----CCCCCCCccEEEEec--------ccCC---hhhHHHHHHHHHHhccCCcE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDT---AHNIVEYIEIISRILKDGGV 329 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~-----~~~~~~~fD~VvT~F--------FIDt---a~Ni~~yl~~I~~~LKPGG~ 329 (412)
.++.++.+|+.+... .....+.||+|++.. .++. ..++.+.++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013445556554210 001246799998632 1221 12346789999999999999
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 985
No 111
>PRK00811 spermidine synthase; Provisional
Probab=98.78 E-value=4.2e-08 Score=96.85 Aligned_cols=108 Identities=19% Similarity=0.204 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||.|.++.+++++ +. .|+++|++..|+..|+--+.. . +. .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~------------~---~~---------~----- 126 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE------------I---AG---------G----- 126 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH------------h---cc---------c-----
Confidence 4569999999999999999987 54 799999999999776622210 0 00 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
.....++.++.+|..++-. ...++||+|+.-.+-.. +..+ .++++.++++|||||+++.
T Consensus 127 -----~~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 127 -----AYDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred -----cccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0002347889999887533 23578999987543221 1122 5789999999999999985
No 112
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.77 E-value=8.2e-08 Score=99.11 Aligned_cols=144 Identities=14% Similarity=0.112 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHHHHhcCcccChhHH----------hhchHHHHH--HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH
Q 015160 142 LADVDKVRCIIRNIVRDWAAEGKTER----------DQCYKPILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISH 209 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~eG~~ER----------~~~y~pIl~--~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~ 209 (412)
+..+..++.+|..++--|..+-..+. +..| +++ .+.+.+.. ..+..|||+|||+|+.+..+|+
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPY--ILDIDNFLDFISK---NQEKILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred ccchHHHHHHHHHHHHHhhccccccccccccccccccccc--cCCHHHHHHHhcC---CCCCeEEEEcCcccHHHHHHHH
Confidence 45567778888888777743211111 1111 222 23333322 2456899999999999999999
Q ss_pred c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEeccccc
Q 015160 210 L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287 (412)
Q Consensus 210 ~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~e 287 (412)
+ +..+.|+|++..|+..+..-. ... + ..++.++.+|+.+
T Consensus 143 ~~P~~~~iGIEI~~~~i~~a~~ka---~~~-----------------------g-------------L~NV~~i~~DA~~ 183 (390)
T PRK14121 143 NNPNKLFIGIEIHTPSIEQVLKQI---ELL-----------------------N-------------LKNLLIINYDARL 183 (390)
T ss_pred hCCCCCEEEEECCHHHHHHHHHHH---HHc-----------------------C-------------CCcEEEEECCHHH
Confidence 8 578999999999986554111 000 0 1247889999876
Q ss_pred ccCCCCCCCCccEEEEecccCC-h--hh----HHHHHHHHHHhccCCcEEE
Q 015160 288 VYSDPSQVGAWDAVVTCFFIDT-A--HN----IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 288 ly~~~~~~~~fD~VvT~FFIDt-a--~N----i~~yl~~I~~~LKPGG~wI 331 (412)
+.. ....+++|.|+..|- |. . .. ..++++.++++|||||.|.
T Consensus 184 ll~-~~~~~s~D~I~lnFP-dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 184 LLE-LLPSNSVEKIFVHFP-VPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhh-hCCCCceeEEEEeCC-CCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 532 123689999987653 22 1 11 1478999999999999987
No 113
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.76 E-value=4.2e-08 Score=88.73 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=65.5
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCc-------chhhh-h-c--
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-D-L-- 343 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPL-------lyh~~-~-~-- 343 (412)
+++++.||+.++. ...++||+|++.|-+....|..+.+++++++|||||.++. +++. ++.+. . .
T Consensus 27 ~i~~~~~d~~~lp---~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDLP---FDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhCC---CCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 4789999998863 3467999999888676667889999999999999999973 2221 00000 0 0
Q ss_pred -----cCCCCCc-------ccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 -----YGQEDEM-------SIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 -----~g~~~~~-------~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+..... .-.++.+|+.++++++||+.+...
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 0100000 113599999999999999977643
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=6.4e-08 Score=87.73 Aligned_cols=97 Identities=13% Similarity=0.031 Sum_probs=66.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++.++++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998654411100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..++.++.+|+.++.. ..+.||.|+++.-.. +.+-+..+++. ..+.+||+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNISTPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccHHHHHHHHHhc--CCCcceEEEE
Confidence 0136789999988643 234699999874222 22223333332 2245777776
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.70 E-value=1.5e-07 Score=91.99 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=81.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
.|...+..+...... .+.+||++|||+|.++.++++.+ -.|+++|++..|+..++-.+... +
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~------------~ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL------------A 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh------------c
Confidence 455555554443321 34499999999999999998885 47999999999987666322100 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhh--HHHHHHHHHHh
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yl~~I~~~ 323 (412)
. .+. ..++.+..+|..++.. ...++||+|+.-.+ .....+ -.++++.+.++
T Consensus 121 ---~---------~~~-----------~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SYD-----------DPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------ccc-----------CCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 000 1236677788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
|||||+++.
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999985
No 116
>PLN03075 nicotianamine synthase; Provisional
Probab=98.68 E-value=1.7e-07 Score=93.67 Aligned_cols=104 Identities=13% Similarity=0.200 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChh-HHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRL-ALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
.+.+||++|||-|.+ +.-+++ + +-.++|+|.++.|+..|+-.... .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~---------------------------- 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--D---------------------------- 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--c----------------------------
Confidence 567999999997755 444443 3 23699999999999877733210 0
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
+ ...+++.|..+|..++.. ..+.||+|++...++- .++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999988642 1468999988744442 36678999999999999999994
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=98.68 E-value=5.2e-07 Score=92.53 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|++..... . .
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~----- 203 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------A----- 203 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------c-----
Confidence 45699999999999999999875 589999999999987761 111110000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCcchh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 339 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~Ni--~~yl~~I~~~LKPGG~wIN~-GPLlyh 339 (412)
....++.++.+|..++-. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 204 ------~~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 204 ------FFDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred ------CCCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 012358889999988533 23568999987643 21 1122 46899999999999999862 211111
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
..-...+...++++||....-..
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t 297 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHT 297 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEE
Confidence 01112367788899997765443
No 118
>PRK03612 spermidine synthase; Provisional
Probab=98.65 E-value=4.5e-07 Score=96.73 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||+|.++.++++.+ -+|+++|+++.|+..++.- |+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~-------------~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTS-------------PA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhC-------------Cc------------------chh
Confidence 45689999999999999999885 4899999999999776620 00 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCcchhh
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 340 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-----i~~yl~~I~~~LKPGG~wIN-~GPLlyh~ 340 (412)
++... ....+++++.+|.++.-. ...++||+|+..+.-...+. -.++++.+.++|||||+++. .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001347889999887432 12478999998754322111 13689999999999999984 3322111
Q ss_pred hhccCCCCCcccCCCHHHHHHHHHhCCC
Q 015160 341 ADLYGQEDEMSIELSLEDVKRVALHYGF 368 (412)
Q Consensus 341 ~~~~g~~~~~~ieLS~EEL~~ll~~~GF 368 (412)
. -...++.+.+++.||
T Consensus 422 ~------------~~~~~i~~~l~~~gf 437 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGL 437 (521)
T ss_pred h------------HHHHHHHHHHHHcCC
Confidence 0 112478888889999
No 119
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.65 E-value=1.8e-07 Score=90.03 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
...-|||+|||+|--+-.|...|+...|+|+|..||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 45689999999999999999999999999999999976541 0 010
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-----------ccCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----------FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-----------FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
=.++.+||-+ +.|+..++||.|++.- +=++..-+..+|.+.+.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1345677775 3467789999988652 112334466789999999999999984 2
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHhCCCE
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFe 369 (412)
|--+ .+=..|-|.+-..++||-
T Consensus 160 fYpe----------n~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPE----------NEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eccc----------chHHHHHHHHHHHhhccC
Confidence 2111 123456777777788884
No 120
>PRK04457 spermidine synthase; Provisional
Probab=98.65 E-value=2.5e-07 Score=90.42 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||.|.++..+++. +-.++++|+++.|+..++--.. .|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~- 113 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LP- 113 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CC-
Confidence 3468999999999999999876 4679999999999977662110 00
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh----hhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.||+.++.. ...++||+|+.-.|-... -.-.++++.+.++|+|||+++
T Consensus 114 ------~~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 114 ------ENGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred ------CCCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 001347889999887543 124689999865442211 123589999999999999997
No 121
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=6.6e-08 Score=93.50 Aligned_cols=176 Identities=22% Similarity=0.270 Sum_probs=114.1
Q ss_pred HHHHHHhcCcccChhHHhhchHHHHHHHHhhCCC---CCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015160 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPN---RSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 151 ~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~---~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (412)
-++.+-|||.+--..... ..+.+++--++.+ +..+....++|+|||+|.++..|-..|. ..+-.|-|+.|+--
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 467788898763322222 2333333322211 1123456899999999999999999996 47889999999843
Q ss_pred HHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc
Q 015160 227 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 306 (412)
Q Consensus 227 s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF 306 (412)
++ .. ++ |.+ .++...+| .|.. ++.++++|.|++..-
T Consensus 111 ~~-------~~------------------qd-------p~i---------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR-------DA------------------QD-------PSI---------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh-------cc------------------CC-------Cce---------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 22 11 00 111 26677777 2321 345799999999876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCcchhhh---------hccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 307 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFA---------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 307 IDta~Ni~~yl~~I~~~LKPGG~wIN--~-GPLlyh~~---------~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
++=..++...+..+...|||.|+||. + |--||... ...|..|..+-.--..++-.++.++||.....
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tv 225 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTV 225 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCccccee
Confidence 66666678999999999999999996 3 44455422 22233343332335678899999999998763
No 122
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.63 E-value=3.4e-07 Score=92.40 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=73.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..|+..+...
T Consensus 68 l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---------------- 128 (322)
T PRK13943 68 LMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---------------- 128 (322)
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 44445444432 2567999999999999999998642 5999999999998776332110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+ ..++.++.||+.+... ..+.||+|+..+-+. ++ .+.+.+.|||||.+
T Consensus 129 ----------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG~L 176 (322)
T PRK13943 129 ----------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGGRV 176 (322)
T ss_pred ----------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCCEE
Confidence 0 0136678888776432 236799998764332 22 34567899999998
Q ss_pred EE
Q 015160 331 IN 332 (412)
Q Consensus 331 IN 332 (412)
+.
T Consensus 177 vv 178 (322)
T PRK13943 177 IV 178 (322)
T ss_pred EE
Confidence 74
No 123
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=3.7e-07 Score=87.82 Aligned_cols=118 Identities=15% Similarity=0.169 Sum_probs=82.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
.++..|.+.. +..+||++|||+|.-+..||+. +-.|+++|++..++..|+..+...
T Consensus 58 ~~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--------------- 116 (234)
T PLN02781 58 LFLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--------------- 116 (234)
T ss_pred HHHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3555555543 4568999999999988877764 358999999999998777433211
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--C-CCCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~-~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LK 325 (412)
....++.++.||..+.... + ...++||+| |+|.. ++..+|++.+.++||
T Consensus 117 -----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~ 169 (234)
T PLN02781 117 -----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVK 169 (234)
T ss_pred -----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcC
Confidence 1113478899998875210 0 013689998 66754 556799999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|--. .+|+
T Consensus 170 ~GG~ii~dn-~l~~ 182 (234)
T PLN02781 170 VGGIIAFDN-TLWF 182 (234)
T ss_pred CCeEEEEEc-CCcC
Confidence 999988422 3443
No 124
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.57 E-value=7.1e-07 Score=92.39 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++...+..|. .|+++|+|..|+..++.-+.. + ++.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 457899999999999998887776 799999999999776622210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEe--cccCCh-------hhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
..+++++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++.+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 01378899998875310 0113589999865 554432 234566778889999999998521
Q ss_pred hhhhhccCCCCCcccCCCHHHHHHHHHh
Q 015160 338 YHFADLYGQEDEMSIELSLEDVKRVALH 365 (412)
Q Consensus 338 yh~~~~~g~~~~~~ieLS~EEL~~ll~~ 365 (412)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 0 224666777766653
No 125
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=7.8e-07 Score=98.09 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=92.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||+|.++..+|+.|.. |+++|+|..|+..++.-+.. + ++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 4579999999999999999999974 99999999999877632210 0 000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCC---------hhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt---------a~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
..++.++.+|+.++.. ...++||+|+.. +|... ..+..+++..+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 0237889999887532 113689999875 34321 23455678888999999999874210
Q ss_pred chhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe--eccccCCCCc
Q 015160 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK--TIETTYTTNP 384 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~--~i~s~Y~~d~ 384 (412)
+-.++.+ .+++.+.||++.... ....-+..++
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i~~~~~~~Dhp~~~ 691 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEITAKTLPPDFARNP 691 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEEecCCCCCCCCCCc
Confidence 0112222 667778899887643 4444444433
No 126
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.57 E-value=1.3e-06 Score=83.41 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 145 ~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
++..-.-.++=+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 3555566777788898652 34567777643 2 3467889999999999664 46777877776430
Q ss_pred HHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 225 ~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
| -..++.|+..+.. .+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vPL---~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVPL---EDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCcC---CCCceeEEEEE
Confidence 0 1246788877754 46899999999
Q ss_pred cccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 305 FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-|.- .|+.+||++.+|+|||||.+.-. | . .+-.-+.++..+.+++.||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IA-------E-V------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIA-------E-V------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEE-------E-E------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEE-------E-e------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87663 37999999999999999998631 1 0 0112277899999999999998854
No 127
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.55 E-value=1.7e-06 Score=84.94 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=94.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
...++||+|+|-|..+..+|..--.|.+.|.|..|-. .|+. +.+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~~v-------------------------- 139 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGFTV-------------------------- 139 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCCeE--------------------------
Confidence 5678999999999999999998888999999999952 2321 11211
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE--ecCcchhhhhccC-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADLYG- 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPLlyh~~~~~g- 345 (412)
+ |..++.. ...+||+|.+...||...+....|+.|++.|+|+|++|- +=|. -+|-...+
T Consensus 140 ------------l--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 140 ------------L--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred ------------E--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 1 1122322 135899998888999999999999999999999999985 2221 12322111
Q ss_pred C--CCC-------cccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 346 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 346 ~--~~~-------~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
. .|. ..+|=..+-+..+++.+||+++... ..+|.-.
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~t--r~PYLcE 246 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERWT--RLPYLCE 246 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEe--ccCcccc
Confidence 1 121 1122233445578889999998754 3567543
No 128
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.53 E-value=8.7e-07 Score=89.81 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++.+|||+|||-|....-..+.+- .+.|+|+|..-|.-|+--.+...+... ++. ....+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~--------------~~~---~~~~f--- 121 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN--------------SKQ---YRFDF--- 121 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT---------------HT---SEECC---
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc--------------ccc---ccccc---
Confidence 678999999999998888888875 588999999998655533311111000 000 00011
Q ss_pred CCCCCCCCCceeEEeccccc-----ccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEEecCc--
Q 015160 268 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGPL-- 336 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~e-----ly~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL-- 336 (412)
...++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||...|-
T Consensus 122 ---------~a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 122 ---------IAEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp ---------EEEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ---------hhheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 13456666542 122 1236999986555 2567788889999999999999999953331
Q ss_pred --chhhhh---------------------c-----cC---------C-CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 337 --LYHFAD---------------------L-----YG---------Q-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 337 --lyh~~~---------------------~-----~g---------~-~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
...... . +| . .+...+-..++-++++++++|++++...
T Consensus 191 ~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 191 EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 111100 0 01 0 0111233489999999999999999754
No 129
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.51 E-value=8.3e-07 Score=92.31 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=84.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|||+|||+|..+..+++++ ..|+|+|+|..|+..++..+.. . +
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~----~----------------------g----- 292 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQR----L----------------------G----- 292 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-----
Confidence 56799999999999999999885 4899999999999766522210 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec------------ccCChhhH-------HHHHHHHHHhc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 324 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F------------FIDta~Ni-------~~yl~~I~~~L 324 (412)
.++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 293 ---------~~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 293 ---------LKATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred ---------CCeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 0145677888764210 11367999984 22 11222333 36799999999
Q ss_pred cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHh-CCCEEEE
Q 015160 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (412)
Q Consensus 325 KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~-~GFeii~ 372 (412)
||||+++-..--++ .+=+.+.+..++++ .+|+++.
T Consensus 363 kpGG~lvystcs~~-------------~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSIL-------------PEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCCC-------------hhhCHHHHHHHHHhCCCCEEec
Confidence 99999983110000 12244677777765 4787665
No 130
>PLN02366 spermidine synthase
Probab=98.51 E-value=1.2e-06 Score=87.98 Aligned_cols=108 Identities=23% Similarity=0.235 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||.|.++.++++.. -.|+.+|++..|+..|+--+ |.++ . +
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~~~~---~---------~----- 141 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------PDLA---V---------G----- 141 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------hhhc---c---------c-----
Confidence 45799999999999999999984 37999999999997766221 1000 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+++... ...++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 142 ------~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 142 ------FDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred ------cCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0123588999998764321 1146899998644321 1111 24789999999999999975
No 131
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.50 E-value=2.8e-06 Score=81.54 Aligned_cols=140 Identities=17% Similarity=0.191 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eL-A~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
...++||.|||.||.+..| ...--.|.-+|.....+..|+--+.. . ..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---------- 103 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---------- 103 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC----------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC----------
Confidence 4579999999999999866 55544799999999999776622210 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEE---EecCcchhhhh
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLYHFAD 342 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wI---N~GPLlyh~~~ 342 (412)
.--.+.+.-+.++.+ ..++||+|.+-..+- |-.++++||+.....|+|||+.| |+..--+.
T Consensus 104 --------~v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~--- 169 (218)
T PF05891_consen 104 --------RVGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD--- 169 (218)
T ss_dssp --------CEEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE---
T ss_pred --------CcceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc---
Confidence 002233333444432 247999999887542 45679999999999999999998 54332110
Q ss_pred ccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 343 ~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.+. ....++.-|.+.++++++++|+++++++
T Consensus 170 ~~D-~~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 170 EFD-EEDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp EEE-TTTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred ccC-CccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 111 1123788899999999999999999966
No 132
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1e-06 Score=92.05 Aligned_cols=101 Identities=16% Similarity=0.089 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..++++ +..|+|+|+|..|+..++-.++.. ++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---e----c--------ccCChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----F--------FIDTAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~----F--------FIDta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|+.++.. .++||+|+. | . +..+..++ .+.|..++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 136778889877532 468999984 1 1 11122223 2579999999
Q ss_pred ccCCcEEEE
Q 015160 324 LKDGGVWIN 332 (412)
Q Consensus 324 LKPGG~wIN 332 (412)
|||||++|-
T Consensus 367 lkpgG~lvy 375 (445)
T PRK14904 367 LKPGGVLVY 375 (445)
T ss_pred cCCCcEEEE
Confidence 999999983
No 133
>PLN02672 methionine S-methyltransferase
Probab=98.46 E-value=2.2e-06 Score=98.09 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=88.8
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4589999999999999999875 5899999999999877632211 0 000000 0000
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------hh----------------------------
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 312 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------~N---------------------------- 312 (412)
........+++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112358899999887532 1123799999983 44221 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHH-HHHHhCCCEEEEEe
Q 015160 313 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK 374 (412)
Q Consensus 313 ---i~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~-~ll~~~GFeii~e~ 374 (412)
+.+.++...++|||||+++- +|. --.+.+. +++++.||+.++.+
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEe
Confidence 13345666689999998873 332 1135777 69999999998754
No 134
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.46 E-value=8.3e-06 Score=76.61 Aligned_cols=122 Identities=24% Similarity=0.240 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+++|+|||+|.++.|+|..|. +|+++|-+..++...+. |.. + +
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~-~---f-------------------------- 81 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAA-R---F-------------------------- 81 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHH-H---h--------------------------
Confidence 677999999999999999996664 79999999999865552 211 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
. .+|+.++.||.-+... ...++|+| ||--..++.+.|+.....|||||.+|-.
T Consensus 82 ------g-~~n~~vv~g~Ap~~L~---~~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~n------------- 134 (187)
T COG2242 82 ------G-VDNLEVVEGDAPEALP---DLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVAN------------- 134 (187)
T ss_pred ------C-CCcEEEEeccchHhhc---CCCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEE-------------
Confidence 0 2358899999877543 12379988 5665578999999999999999999831
Q ss_pred CCCcccCC-CHHHHHHHHHhCCC-EEEEE
Q 015160 347 EDEMSIEL-SLEDVKRVALHYGF-EFEKE 373 (412)
Q Consensus 347 ~~~~~ieL-S~EEL~~ll~~~GF-eii~e 373 (412)
.+.| +.-.+.+.+++.|| +++..
T Consensus 135 ----aitlE~~~~a~~~~~~~g~~ei~~v 159 (187)
T COG2242 135 ----AITLETLAKALEALEQLGGREIVQV 159 (187)
T ss_pred ----eecHHHHHHHHHHHHHcCCceEEEE
Confidence 1111 34455667888999 66653
No 135
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.42 E-value=1.4e-06 Score=91.52 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=82.2
Q ss_pred hHHhhchHH-HHHHHHhhCCCCCC-CCCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHHhhhhcccc
Q 015160 165 TERDQCYKP-ILEELDALFPNRSK-ESPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTET 236 (412)
Q Consensus 165 ~ER~~~y~p-Il~~L~~~~p~~~~-~~~~rVLvPGCGlGRLa~eLA~~G------f~V~GnD~S~~ML~~s~filn~~~~ 236 (412)
..|-.+|.. |.+.|......... .+...|||+|||+|-|+...++.| ..|.++|-+..+..+.+.+++.
T Consensus 160 ~vKY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--- 236 (448)
T PF05185_consen 160 PVKYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--- 236 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh---
Confidence 334344443 33445554432211 135689999999999998887776 6899999998777655433221
Q ss_pred cccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhH
Q 015160 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNI 313 (412)
Q Consensus 237 ~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni 313 (412)
+.+ .+++.++.||++++.. ..+.|+||+= .|++.. -.
T Consensus 237 -n~w----------------------------------~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~ 276 (448)
T PF05185_consen 237 -NGW----------------------------------GDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LS 276 (448)
T ss_dssp -TTT----------------------------------TTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SH
T ss_pred -cCC----------------------------------CCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cC
Confidence 111 2348899999999865 3699999986 477765 46
Q ss_pred HHHHHHHHHhccCCcEEE
Q 015160 314 VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 314 ~~yl~~I~~~LKPGG~wI 331 (412)
.+.|....|.|||||+.|
T Consensus 277 pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 277 PECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHGGGGEEEEEEEE
T ss_pred HHHHHHHHhhcCCCCEEe
Confidence 688999999999999998
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.42 E-value=2.3e-06 Score=81.46 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCcccCh--------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 015160 146 DKVRCIIRNIVRDWAAEGK--------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 210 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG~--------------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~- 210 (412)
..|..+++.+-|++--... .++...-+.+...+.+.+.- +++.+||++|||+|+++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 5677788888777643210 12222334456666666542 37789999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc
Q 015160 211 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288 (412)
Q Consensus 211 G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el 288 (412)
| ..|+++|....++..|+-.|.... ..++.+..||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 3 369999999999887775553210 11478899997664
Q ss_pred cCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 015160 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 335 (412)
Q Consensus 289 y~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GP 335 (412)
+. ..+.||.|+...-....+ ..+.+.||+||++|. +++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEESS
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEcc
Confidence 43 357899998776655433 346678999999997 553
No 137
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.41 E-value=9.8e-06 Score=79.10 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=117.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhccccccccccccccccc-------CCCCCcccCc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 259 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~-------sn~~s~~~ql 259 (412)
.+..+||+||-.|-|+..+|+. |- .|.|+|+....+--|+.-+.+-....-.+.--|++++ |+ .+..+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 4567999999999999999987 43 5899999999987777444322110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccC---ChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 260 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FID---TAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 260 r~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FID---ta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
-...+||... -...|..+...||++.- ...||+|++.- .|+ -.+-+..+|..|+++|.|||++| +
T Consensus 137 ~t~~~p~n~~---f~~~n~vle~~dfl~~~-----~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNVW---FQKENYVLESDDFLDMI-----QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcchh---cccccEEEecchhhhhc-----cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 1223333211 12345777777888543 47899998653 333 23559999999999999999999 5
Q ss_pred cCcchhh-hhc------cCCCCCcccCCCHHHHHHHHHh--CCCEEEEEe-eccccCCCCcccccccccceEEEEEEEcC
Q 015160 334 GPLLYHF-ADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEK-TIETTYTTNPRSMMQNRYFTAFWTMRKKS 403 (412)
Q Consensus 334 GPLlyh~-~~~------~g~~~~~~ieLS~EEL~~ll~~--~GFeii~e~-~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~ 403 (412)
-|--|.- ... .+ .....+.|..|....++.+ .||+-.+.- .+.+.|.+ .+.....+-+|+.
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk--------gf~R~i~~y~Kk~ 278 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK--------GFDRPILLYRKKL 278 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc--------cccceeeeeeccC
Confidence 6665642 111 01 1113578999999998885 588776644 35555543 2334444556654
Q ss_pred cc
Q 015160 404 VT 405 (412)
Q Consensus 404 ~~ 405 (412)
.+
T Consensus 279 ~~ 280 (288)
T KOG2899|consen 279 HP 280 (288)
T ss_pred CC
Confidence 33
No 138
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.2e-06 Score=80.81 Aligned_cols=119 Identities=24% Similarity=0.262 Sum_probs=83.0
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|||+|-+|.-||+.+- .|+|+|+|...|.+|+- |.. . + +
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--Na~-~-~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--NAE-R-N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--HHH-H-c----------------------C--------
Confidence 799999999999999999986 89999999999988862 211 0 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEec-ccCCh------------------------hhHHHHHHHHHHhc
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 324 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yl~~I~~~L 324 (412)
. .++.++.+|.++-. .++||+||++= ||... .-+...+..+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445666655432 35899998872 44432 12345677788899
Q ss_pred cCCcEEEE-ecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCC-CEEEE
Q 015160 325 KDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEK 372 (412)
Q Consensus 325 KPGG~wIN-~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~G-Feii~ 372 (412)
+|||+++- .| .-..+++++++.+.| |..+.
T Consensus 229 ~~~g~l~le~g------------------~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLILEIG------------------LTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEEEEC------------------CCcHHHHHHHHHhcCCceEEE
Confidence 99998873 11 123678999999999 55544
No 139
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.41 E-value=1.3e-06 Score=83.01 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=81.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|-+.. +..+||++|+|+|.-+..||+. +-.|+.+|.+..+...|+-.+..+
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a---------------- 93 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA---------------- 93 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc----------------
Confidence 555555543 4569999999999999999974 569999999999998877544322
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKP 326 (412)
....++.+..||..++-.. ....++||.| |||.. .+-.+|++.+.++|+|
T Consensus 94 ----------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 94 ----------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp ----------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred ----------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 1123478899998874320 1113689998 77865 4577899999999999
Q ss_pred CcEEEE
Q 015160 327 GGVWIN 332 (412)
Q Consensus 327 GG~wIN 332 (412)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
No 140
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.37 E-value=2e-06 Score=89.78 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+... ++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g~--- 287 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------KL--- 287 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999998886 568999999999997665332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---ccCChh---------hH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTAH---------NI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta~---------Ni-------~~yl~~I~~~ 323 (412)
.++.+..+|..++.. ...++||.|+. |. .+...+ ++ .+.|+.++++
T Consensus 288 ----------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 288 ----------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ----------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125678888876531 12468999985 21 121111 22 4568999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
No 141
>PRK04148 hypothetical protein; Provisional
Probab=98.37 E-value=4.1e-06 Score=74.89 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=73.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGR-La~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|+++..+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 4667788877654 45789999999996 99999999999999999998754222 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP 326 (412)
..+..+.+|.++... .-.+.+|+|.+ |-..+.+..+|-.+++-+.-
T Consensus 58 ------------------------~~~~~v~dDlf~p~~--~~y~~a~liys---irpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPNL--EIYKNAKLIYS---IRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------hCCeEEECcCCCCCH--HHHhcCCEEEE---eCCCHHHHHHHHHHHHHcCC
Confidence 013556777765321 22357899977 66677788888888876643
No 142
>PLN02476 O-methyltransferase
Probab=98.36 E-value=3.3e-06 Score=83.81 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|.+.. +..+||++|+|+|.-+..+|+. +-.|+++|.+..++..|+-.+..+
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4569999999999999999973 346999999999988776433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccC
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKP 326 (412)
....++.++.||..+.-.. ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478899998874310 0013689987 77866 4577999999999999
Q ss_pred CcEEEEecCcchh
Q 015160 327 GGVWINLGPLLYH 339 (412)
Q Consensus 327 GG~wIN~GPLlyh 339 (412)
||++|- -..+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999983 235565
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.33 E-value=4e-06 Score=87.56 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... ++
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g~--- 300 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------GL--- 300 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 4578999999999999999986 358999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---c---ccC---------ChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---F---FID---------ta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|+.++.. + ..++||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 301 ----------~~v~~~~~D~~~~~~-~-~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 301 ----------TNIETKALDARKVHE-K-FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred ----------CeEEEEeCCcccccc-h-hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 126788899877531 1 12689999852 1 111 11222 3579999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||.+|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
No 144
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.30 E-value=4.7e-06 Score=82.01 Aligned_cols=141 Identities=18% Similarity=0.250 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 146 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 146 ~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+-.-.-.++=|.-|.... ...|++.|... | ...-|-|.|||-+++|. ..-..|...|+-.
T Consensus 150 dlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a---- 209 (325)
T KOG3045|consen 150 DLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA---- 209 (325)
T ss_pred HHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec----
Confidence 333344455566787652 33477777764 2 45678899999999975 2222333333211
Q ss_pred HHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec
Q 015160 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305 (412)
Q Consensus 226 ~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F 305 (412)
.+-.+++.||+.+.. .+++.|++|.|.
T Consensus 210 --------------------------------------------------~~~~V~~cDm~~vPl---~d~svDvaV~CL 236 (325)
T KOG3045|consen 210 --------------------------------------------------VNERVIACDMRNVPL---EDESVDVAVFCL 236 (325)
T ss_pred --------------------------------------------------CCCceeeccccCCcC---ccCcccEEEeeH
Confidence 012457789998654 579999999988
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 306 FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
-|.- .|+.++|++++|+|||||+|--. -+ .+-.-+.-.+.+.++.+||++.+..
T Consensus 237 SLMg-tn~~df~kEa~RiLk~gG~l~IA-Ev-------------~SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045|consen 237 SLMG-TNLADFIKEANRILKPGGLLYIA-EV-------------KSRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred hhhc-ccHHHHHHHHHHHhccCceEEEE-eh-------------hhhcccHHHHHHHHHHcCCeeeehh
Confidence 7653 47999999999999999987420 01 1222345568889999999998754
No 145
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.30 E-value=1.9e-05 Score=75.85 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=106.5
Q ss_pred chHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhccccccccccccccc
Q 015160 170 CYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~ 247 (412)
+-..++++|....-. ...+...++|++||=....+.. ..+ |+|+.+|+.. . .
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-~------------~----------- 84 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-Q------------H----------- 84 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC-C------------C-----------
Confidence 345677888776532 2222458999999965444332 233 5677777654 0 0
Q ss_pred ccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 015160 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 248 ~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~L 324 (412)
-.+.+.||.+...+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 85 ------------------------------~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 85 ------------------------------PGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred ------------------------------CCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 1346789998654323468999998775 7888888889999999999
Q ss_pred cCCcE-----EEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEE
Q 015160 325 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTM 399 (412)
Q Consensus 325 KPGG~-----wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~Va 399 (412)
||+|. +.-+-|+--+-. +--++.+-++.+++..||+.++.+. .=+-+||..
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv~N---------SRy~~~~~l~~im~~LGf~~~~~~~---------------~~Kl~y~l~ 190 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCVTN---------SRYMTEERLREIMESLGFTRVKYKK---------------SKKLAYWLF 190 (219)
T ss_pred CCCCccCcceEEEEeCchHhhc---------ccccCHHHHHHHHHhCCcEEEEEEe---------------cCeEEEEEE
Confidence 99999 655666644321 3468899999999999999998652 115677777
Q ss_pred EEcCc
Q 015160 400 RKKSV 404 (412)
Q Consensus 400 rK~~~ 404 (412)
||...
T Consensus 191 r~~~~ 195 (219)
T PF11968_consen 191 RKSGK 195 (219)
T ss_pred eecCC
Confidence 77643
No 146
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.28 E-value=5.1e-06 Score=81.10 Aligned_cols=101 Identities=27% Similarity=0.218 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++..++.. ++
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999997665332210 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE---ec---cc---------CChhhH-------HHHHHHHHHh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yl~~I~~~ 323 (412)
.++.++.+|...+.. ..+.||+|+. |. .+ .+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125667777665422 2356999974 22 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999987
No 147
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.28 E-value=4.1e-06 Score=81.42 Aligned_cols=153 Identities=22% Similarity=0.245 Sum_probs=101.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
|+.+.+.+.-- ...+.+.+|||-.-|+|+.|.+-+++|. .|..+|-.+.-|..| ++-||-+
T Consensus 119 P~~Dt~~Kv~~-V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr---- 180 (287)
T COG2521 119 PLEDTLAKVEL-VKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSR---- 180 (287)
T ss_pred cHHHHHhhhhe-eccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCc----
Confidence 55555554221 1123578999999999999999999999 899999999877432 3445522
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCc
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG 328 (412)
+- .. ..+.++.||..++-. .+.+++||+|+-- |-+.+.---.++.++++|+|||||
T Consensus 181 ----~l--~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 181 ----EL--FE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----cc--cc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 11 01 126789999888654 2457889999853 445553334578999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.+.. |-...|.. -....+ ...+.+.|.++||+.++.
T Consensus 240 rlFH-------YvG~Pg~r-yrG~d~-~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 240 RLFH-------YVGNPGKR-YRGLDL-PKGVAERLRRVGFEVVKK 275 (287)
T ss_pred cEEE-------EeCCCCcc-cccCCh-hHHHHHHHHhcCceeeee
Confidence 9874 32221110 001122 356777888999997663
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.27 E-value=8.2e-06 Score=81.53 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+.+|||+|||+|.++..||++|..|+|+|+|..|+..|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999997766
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.26 E-value=7.4e-06 Score=85.59 Aligned_cols=124 Identities=15% Similarity=0.253 Sum_probs=80.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChh-hHHHHHHHHHHhccCCcE-EEEecCcchhhhhccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGV-WINLGPLLYHFADLYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~-Ni~~yl~~I~~~LKPGG~-wIN~GPLlyh~~~~~g 345 (412)
..++.+.++|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++ +|...|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0137789999876421 1112357999964 4321 13455666666 566665 455555321
Q ss_pred CCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 346 ~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
.-|+..+ .+.||++.+-.
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~ 423 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAG 423 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEE
Confidence 1233333 35699999865
No 150
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-05 Score=80.67 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=78.2
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+.|.+.+|.. ...+|||+|||.|-|+..||++.= .++-+|.|+..+..|+.-+.. +.
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~----N~-------------- 206 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA----NG-------------- 206 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH----cC--------------
Confidence 4455566543 345999999999999999999974 899999999999888733310 00
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cc--cCChhhH-HHHHHHHHHhccCCc
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNI-VEYIEIISRILKDGG 328 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~Ni-~~yl~~I~~~LKPGG 328 (412)
.++..+...|. |.. ..++||+|+|+ |. .++..++ .+.|+...+.|++||
T Consensus 207 ---------------------~~~~~v~~s~~---~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 207 ---------------------VENTEVWASNL---YEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ---------------------CCccEEEEecc---ccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 01112344443 321 24599999998 53 4454443 378999999999999
Q ss_pred EEEE--ecCcchh
Q 015160 329 VWIN--LGPLLYH 339 (412)
Q Consensus 329 ~wIN--~GPLlyh 339 (412)
-+-- .|.|-|.
T Consensus 261 eL~iVan~~l~y~ 273 (300)
T COG2813 261 ELWIVANRHLPYE 273 (300)
T ss_pred EEEEEEcCCCChH
Confidence 7632 2545443
No 151
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.24 E-value=1.2e-05 Score=78.22 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+.. .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25678999999999999999999999999999999986554
No 152
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.21 E-value=9.9e-06 Score=76.59 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (412)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866666 47999999999987665
No 153
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.8e-05 Score=77.46 Aligned_cols=118 Identities=23% Similarity=0.214 Sum_probs=86.4
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhccccccccccccc
Q 015160 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (412)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~ 245 (412)
..|++=..+|-.+.. -.++.+||+.|.|.|.|+..||.. | -+|+..|+-..++-.|+.-++..
T Consensus 77 iIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~----------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF----------- 142 (256)
T ss_pred eecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------
Confidence 455555555555543 237889999999999999999952 3 37999999999998877444211
Q ss_pred ccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 246 i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
...+++.+..+|+.+... .+.||+| |||.. +.-++|+.++++||
T Consensus 143 ---------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~Lk 186 (256)
T COG2519 143 ---------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDALK 186 (256)
T ss_pred ---------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHhC
Confidence 111235667799888543 3489988 57765 47799999999999
Q ss_pred CCcEEEEecCc
Q 015160 326 DGGVWINLGPL 336 (412)
Q Consensus 326 PGG~wIN~GPL 336 (412)
|||.++-+-|.
T Consensus 187 pgg~~~~y~P~ 197 (256)
T COG2519 187 PGGVVVVYSPT 197 (256)
T ss_pred CCcEEEEEcCC
Confidence 99999976663
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.21 E-value=4.1e-06 Score=79.09 Aligned_cols=124 Identities=17% Similarity=0.197 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
...||+..||++|--++-||.. + +.+.|.|+|..+|..|+- .+||-- ...+. . ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-----------G~Y~~~-~~~~~-~-~~ 96 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-----------GIYPER-SLRGL-P-PA 96 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-----------TEEEGG-GGTTS---HH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-----------CCCCHH-HHhhh-H-HH
Confidence 5689999999999876655532 3 689999999999987761 122210 00000 0 00
Q ss_pred Ccccccc-CCCC-CCC--CCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 015160 258 QLRPVSI-PDIH-PAS--AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 258 qlr~v~i-PDv~-p~~--~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
.++. -| +... ... ......+.|...|..+.+. ..+.||+|++-. |++.. ...+.++.+++.|+|||++
T Consensus 97 ~~~r-yf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 97 YLRR-YFTERDGGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHH-HEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHH-hccccCCCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000 00 0000 000 0123458999999888222 358999998763 55544 3678999999999999999
Q ss_pred E
Q 015160 331 I 331 (412)
Q Consensus 331 I 331 (412)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 8
No 155
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.20 E-value=4.8e-06 Score=81.01 Aligned_cols=95 Identities=18% Similarity=0.243 Sum_probs=66.9
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
.++|+|||+|--+.-+|..--.|.|+|.|..||-++.- +.. .. ++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k---~~~--~~---------y~~-------------------- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKK---HPP--VT---------YCH-------------------- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhc---CCC--cc---------ccc--------------------
Confidence 78899999997778888875579999999999965441 100 00 000
Q ss_pred CCCCCceeEEecccccccCCCCCCCCccEEEEe--c-ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+|...++.+|.+ .+++.|+|++. + +.| +.++++.++|+||+.|-.|
T Consensus 82 ----t~~~ms~~~~v~L~g---~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLG---GEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ----CCccccccccccccC---CCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE
Confidence 014566677777765 26899999754 2 344 5689999999999877555
No 156
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.19 E-value=1.3e-05 Score=78.37 Aligned_cols=117 Identities=17% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~s 250 (412)
++..|-+.. +..+||++|.++|.=+..+|+. +-.|+.+|....+...|+-.+..+
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666654 3468999999999999988864 458999999999988777444321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC--CC--CCCCccEEEEecccCCh-hhHHHHHHHHHHhcc
Q 015160 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (412)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~--~~--~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LK 325 (412)
....++.++.||..+.... +. ..++||+| |||.. .+-..|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123478899998885321 00 12689988 77865 446689999999999
Q ss_pred CCcEEEEecCcchh
Q 015160 326 DGGVWINLGPLLYH 339 (412)
Q Consensus 326 PGG~wIN~GPLlyh 339 (412)
|||++|- -.++|+
T Consensus 182 ~GGviv~-DNvl~~ 194 (247)
T PLN02589 182 VGGVIGY-DNTLWN 194 (247)
T ss_pred CCeEEEE-cCCCCC
Confidence 9999883 335665
No 157
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.17 E-value=7.6e-06 Score=85.36 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=83.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+|||+|||.|..+..||++. -.|+|+|+|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 47999999999997665322110 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCC-CCCCCCccEEEE---ec---cc---------CChhh-------HHHHHHHHHH
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF---FI---------DTAHN-------IVEYIEIISR 322 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT---~F---FI---------Dta~N-------i~~yl~~I~~ 322 (412)
.++.++.+|+.++... +...++||.|+. |. -+ .+..+ ..+.|+.+.+
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1267788888765310 012468999984 21 01 11122 2467999999
Q ss_pred hccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhC-CCEEE
Q 015160 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFE 371 (412)
Q Consensus 323 ~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~-GFeii 371 (412)
+|||||++|-..-.++. +=..+.+..++++. +|+++
T Consensus 373 ~lkpgG~lvystcsi~~-------------~Ene~~v~~~l~~~~~~~~~ 409 (434)
T PRK14901 373 LLKPGGTLVYATCTLHP-------------AENEAQIEQFLARHPDWKLE 409 (434)
T ss_pred hcCCCCEEEEEeCCCCh-------------hhHHHHHHHHHHhCCCcEec
Confidence 99999999831111111 11235666777654 68765
No 158
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.17 E-value=1.5e-05 Score=78.17 Aligned_cols=52 Identities=17% Similarity=0.127 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 30 i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 30 ILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25568999999999999999999999999999999986544
No 159
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.17 E-value=1.1e-05 Score=83.83 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~ 252 (412)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 344444444421 1446899999999999999999999999999999999777632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcE
Q 015160 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGV 329 (412)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~ 329 (412)
. ..++.++.||+.++.. .+...+.||+|+ +|.... ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0237889999876321 011135799886 354321 2355565554 889876
Q ss_pred E
Q 015160 330 W 330 (412)
Q Consensus 330 w 330 (412)
.
T Consensus 392 v 392 (431)
T TIGR00479 392 V 392 (431)
T ss_pred E
Confidence 4
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.16 E-value=1.5e-05 Score=79.57 Aligned_cols=91 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.+.+.... .++.+||++|||+|.++..|++++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44444444322 25678999999999999999999999999999999987655222100
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (412)
....++.++.+|+.++.. ..||+||.+ |+|.+.
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istp 116 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSP 116 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcH
Confidence 001247899999988643 468998876 566654
No 161
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.14 E-value=1e-05 Score=81.77 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=104.6
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh
Q 015160 160 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 230 (412)
Q Consensus 160 S~eG~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi 230 (412)
.+.|.+.|+.+ -.+|-..|-+.+- ++...||++|||-|....-.-+.|. ...|+|++.--+--++--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 34666677542 2233334444442 2456799999999999888878886 588999998666433311
Q ss_pred hhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC---CCCCCCCccEEEEecc-
Q 015160 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWDAVVTCFF- 306 (412)
Q Consensus 231 ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~---~~~~~~~fD~VvT~FF- 306 (412)
.+.. | .+.+ ...|| ..|++||-+.... .++.+.+||+|-+-|.
T Consensus 160 Yrdm------------~------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~ 206 (389)
T KOG1975|consen 160 YRDM------------K------NRFK---KFIFT------------AVFIAADCFKERLMDLLEFKDPRFDIVSCQFAF 206 (389)
T ss_pred HHHH------------H------hhhh---cccce------------eEEEEeccchhHHHHhccCCCCCcceeeeeeeE
Confidence 1100 0 0000 11111 4567777543110 1122345999977663
Q ss_pred ---cCChhhHHHHHHHHHHhccCCcEEEEecC----cchhhhhc----c----------------CC-CCC---------
Q 015160 307 ---IDTAHNIVEYIEIISRILKDGGVWINLGP----LLYHFADL----Y----------------GQ-EDE--------- 349 (412)
Q Consensus 307 ---IDta~Ni~~yl~~I~~~LKPGG~wIN~GP----Llyh~~~~----~----------------g~-~~~--------- 349 (412)
..|.+...-.+..+.++|||||+||.--| ++|+.... . +. ++.
T Consensus 207 HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~Le 286 (389)
T KOG1975|consen 207 HYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLE 286 (389)
T ss_pred eeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcc
Confidence 45666688899999999999999996544 22222110 0 00 110
Q ss_pred -----cccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 350 -----MSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 350 -----~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..+-...+-++.+++++|.+++...
T Consensus 287 daVdcPEylV~F~~l~~lae~y~LeLv~~k 316 (389)
T KOG1975|consen 287 DAVDCPEYLVPFPTLVSLAEEYGLELVFVK 316 (389)
T ss_pred cccCCcceeeehHHHHHHHHhcCcEEEEec
Confidence 0122367889999999999999754
No 162
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.12 E-value=1.8e-05 Score=82.23 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~f 229 (412)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999977663
No 163
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.12 E-value=2.2e-05 Score=73.39 Aligned_cols=39 Identities=21% Similarity=-0.061 Sum_probs=35.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 45899999999999999999997 7999999999986655
No 164
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.12 E-value=1.1e-05 Score=82.04 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=94.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
+..|.+....-++... +++..||||=||||...+|....|..|.|+|++..|+.-++--|++
T Consensus 180 s~~P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~---------------- 241 (347)
T COG1041 180 SMDPRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEY---------------- 241 (347)
T ss_pred CcCHHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhh----------------
Confidence 4566676666555432 3677999999999999999999999999999999999765522211
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-----cCCh--hh-HHHHHHHH
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-----IDTA--HN-IVEYIEII 320 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F-----IDta--~N-i~~yl~~I 320 (412)
..+++. ..+...|++.+.. ..+++|+|+|=- | +... .. ..+.|+++
T Consensus 242 ------------y~i~~~----------~~~~~~Da~~lpl---~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 242 ------------YGIEDY----------PVLKVLDATNLPL---RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred ------------hCcCce----------eEEEecccccCCC---CCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 111111 1233348777653 345799999853 2 1111 12 45789999
Q ss_pred HHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 321 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 321 ~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+.+||+||+++-..|- ... ..++..||+++..-
T Consensus 297 ~evLk~gG~~vf~~p~-----------------~~~----~~~~~~~f~v~~~~ 329 (347)
T COG1041 297 SEVLKPGGRIVFAAPR-----------------DPR----HELEELGFKVLGRF 329 (347)
T ss_pred HHHhhcCcEEEEecCC-----------------cch----hhHhhcCceEEEEE
Confidence 9999999999864441 011 13557899998854
No 165
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.10 E-value=7.1e-05 Score=72.34 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=34.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (412)
++.+|||+|||||.++..|+++|. .|+|+|+|..||..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 566899999999999999999986 69999999999853
No 166
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.7e-05 Score=74.85 Aligned_cols=125 Identities=19% Similarity=0.191 Sum_probs=81.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+..|||+|||||+|++-.+-+| +.|.|+|+...++.+++-..+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~----------------------------------- 89 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE----------------------------------- 89 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH-----------------------------------
Confidence 45689999999999999999999 689999999999987762111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~ 343 (412)
....++.++.+|..++. +.+|.|+++ | -.-.+ | ..++....++- - ..|....
T Consensus 90 -----~l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rha-D-r~Fl~~Ale~s----~------vVYsiH~- 145 (198)
T COG2263 90 -----ELLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHA-D-RPFLLKALEIS----D------VVYSIHK- 145 (198)
T ss_pred -----hhCCceEEEEcchhhcC------CccceEEECCCCccccccC-C-HHHHHHHHHhh----h------eEEEeec-
Confidence 01234889999988864 578888776 3 11111 1 12232222211 1 1222111
Q ss_pred cCCCCCcccCCCHHHHHHHHHhCCCEEEEEe----eccccCC
Q 015160 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYT 381 (412)
Q Consensus 344 ~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~----~i~s~Y~ 381 (412)
--+.+-+++.....||++...+ .++..|.
T Consensus 146 ---------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~ 178 (198)
T COG2263 146 ---------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYP 178 (198)
T ss_pred ---------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCc
Confidence 1278889999999999988753 3445554
No 167
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=6.2e-05 Score=71.98 Aligned_cols=110 Identities=17% Similarity=0.142 Sum_probs=76.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
++..+.+.+.- +++.+||++|||+|+.+.-||+.+-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887666533321
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 332 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN- 332 (412)
.- -.|+.+.+||-..=+. ....||.|+..--.++.+ +...+-|||||++|-
T Consensus 117 --------lg-----------~~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------LG-----------YENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------cC-----------CCceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 11 1237889999766443 257899886443333332 345668999999996
Q ss_pred ec
Q 015160 333 LG 334 (412)
Q Consensus 333 ~G 334 (412)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 45
No 168
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.02 E-value=0.00012 Score=73.20 Aligned_cols=210 Identities=16% Similarity=0.156 Sum_probs=120.2
Q ss_pred cccccccCCCCCCCCCCCCCCcCCCCCCcchHHHH--HHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCe
Q 015160 115 NDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVR--CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA 192 (412)
Q Consensus 115 ~~~~~~~g~~~~~~~~w~~~~~~~~~~~~d~~kv~--s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~r 192 (412)
..++.+.|..|.+.-+|.=-.. .+- ..-+.|.. .-|..+- | .|-..|+.-....+..--..+... ..+.+
T Consensus 67 i~lG~~tGFDSGstLDYVYrN~-p~G-~~~~GrliDr~yLnaiG--W--rGIR~Rk~~l~~~i~~ai~~L~~~--g~pvr 138 (311)
T PF12147_consen 67 IRLGLETGFDSGSTLDYVYRNQ-PQG-KGPLGRLIDRNYLNAIG--W--RGIRQRKVHLEELIRQAIARLREQ--GRPVR 138 (311)
T ss_pred eeechhcCCCCcchHhHHhcCC-CCC-cchHHHHHHHhhhcccc--h--HHHHHHHHHHHHHHHHHHHHHHhc--CCceE
Confidence 4566677877666666654331 000 01111111 0111111 3 466777764433333322222211 26789
Q ss_pred EEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 193 CLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G----f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
|||+.||.||..++..... -.|.-+|+|..-+...+-+... |++
T Consensus 139 IlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~--------------------------~gL------ 186 (311)
T PF12147_consen 139 ILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE--------------------------RGL------ 186 (311)
T ss_pred EEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH--------------------------cCC------
Confidence 9999999999999986653 3588999999887766644321 011
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--c--ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhc-
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~- 343 (412)
.+-++|.++|.++........-..++++.+ | |-|. .-|..-|.-++.+|.|||++|--| --||-...
T Consensus 187 ------~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn-~lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~ 258 (311)
T PF12147_consen 187 ------EDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDN-DLVRRSLAGLARALEPGGYLIYTG-QPWHPQLEM 258 (311)
T ss_pred ------ccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcH-HHHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHH
Confidence 111588999988743211122345655544 2 4343 336678999999999999999533 22553211
Q ss_pred ----c----CCCCCccc--CCCHHHHHHHHHhCCCEEEEEe
Q 015160 344 ----Y----GQEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 344 ----~----g~~~~~~i--eLS~EEL~~ll~~~GFeii~e~ 374 (412)
. ++.+ .+ --|..|+.+|++.+||+-+...
T Consensus 259 IAr~LtsHr~g~~--WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 259 IARVLTSHRDGKA--WVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHhcccCCCc--eEEEecCHHHHHHHHHHcCCchhhhe
Confidence 0 1111 22 2499999999999999855443
No 169
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.01 E-value=4.6e-05 Score=74.51 Aligned_cols=154 Identities=19% Similarity=0.185 Sum_probs=97.3
Q ss_pred hcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhc
Q 015160 157 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 157 RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~filn~ 233 (412)
.+|+.-=...-+..|++=+..|..++.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3465544444467888888888777653 37899999999999999999975 2 2899999999998776622211
Q ss_pred ccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhH
Q 015160 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 313 (412)
Q Consensus 234 ~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni 313 (412)
+ ....++.+..+|..+--......+.+|+| |||.. +.
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav----fLDlp-~P 124 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFDEELESDFDAV----FLDLP-DP 124 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--STT-TTSEEEE----EEESS-SG
T ss_pred ------c--------------------------------CCCCCceeEecceecccccccccCcccEE----EEeCC-CH
Confidence 0 11234788888876421111123568887 67865 46
Q ss_pred HHHHHHHHHhc-cCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 314 VEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 314 ~~yl~~I~~~L-KPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
-++|..+.++| ||||++..+-|..- . ...+...|++.||..++
T Consensus 125 w~~i~~~~~~L~~~gG~i~~fsP~ie------------Q----v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 125 WEAIPHAKRALKKPGGRICCFSPCIE------------Q----VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGHHHHHHHE-EEEEEEEEEESSHH------------H----HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHhcCCceEEEECCCHH------------H----HHHHHHHHHHCCCeeeE
Confidence 68999999999 99999998766421 1 12334456678998776
No 170
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.99 E-value=4.3e-05 Score=78.41 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+.+|||+|||+|.++.++|.+|..|+|+|+|..++..++.-+.. + .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~----------------------~-------- 279 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L----------------------G-------- 279 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 35899999999999999999999999999999999877622210 0 0
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh--HHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 346 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~ 346 (412)
..++.+.++|+.++.. ...++||+|+. |.... ..+.++.+.+ ++|+++..- ..|-.
T Consensus 280 -----~~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 280 -----LDNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred -----CCcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 0137889999876432 11246998864 43322 2344555543 788776542 33321
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
=..|++.+ .||++.+-.
T Consensus 339 --------laRDl~~L---~gy~l~~~~ 355 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQ 355 (374)
T ss_pred --------HHHHHHHh---cCceEEEEE
Confidence 12345544 599998855
No 171
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.99 E-value=3.7e-05 Score=76.67 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhccccccccccccc----------ccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IHS 248 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~----------i~~ 248 (412)
...||+..||.||--++-||.. .+.|.|.|+|..+|..|+- .+||- ...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999877766543 3689999999999977661 22330 000
Q ss_pred cCCCC-CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhc
Q 015160 249 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (412)
Q Consensus 249 ~sn~~-s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~L 324 (412)
+=... ...+ ....+ .+ .....+.|...|..+... | ..+.||+|++.. |++. +...+.++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~~-~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQW-A-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCCC-c-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00011 00 123458899999876311 1 247899998742 4544 34778999999999
Q ss_pred cCCcEEE
Q 015160 325 KDGGVWI 331 (412)
Q Consensus 325 KPGG~wI 331 (412)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999876
No 172
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.98 E-value=5.4e-05 Score=72.87 Aligned_cols=99 Identities=26% Similarity=0.334 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
+..+||++|.++|.=+..+|.. | .++.+|+.++|...|+-.+..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~a------------------------------ 107 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEA------------------------------ 107 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence 5679999999999999988865 4 7999999999998887555322
Q ss_pred CCCCCCCCCCCCceeEEe-cccccccCCCCCCCCccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015160 265 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+.+.++. ||.++.... ...++||+| |||-+ .+-.+|++.+.++|||||+.|
T Consensus 108 --------g~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 108 --------GVDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CCcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 1112356666 688876541 235899998 78876 445689999999999999999
No 173
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.95 E-value=2.6e-05 Score=72.15 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFI-----------SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-----------V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
++..||||=||+|.+..|-|..|.. +.|.|++..|+..|+-.+..+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----------------------- 84 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----------------------- 84 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----------------------
Confidence 5568999999999999999888765 459999999998877433221
Q ss_pred CccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c---cCChhhHH----HHHHHHHHhccCCcE
Q 015160 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIV----EYIEIISRILKDGGV 329 (412)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDta~Ni~----~yl~~I~~~LKPGG~ 329 (412)
.....+.+..+|++++.. ..+.+|+|||.- | +....++. +.++.+.++|++..+
T Consensus 85 ---------------g~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 85 ---------------GVEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp ---------------T-CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ---------------ccCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 011237889999999862 257999999983 2 33333232 357888889999666
Q ss_pred EEE
Q 015160 330 WIN 332 (412)
Q Consensus 330 wIN 332 (412)
||.
T Consensus 147 ~l~ 149 (179)
T PF01170_consen 147 FLT 149 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 174
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.95 E-value=2.3e-05 Score=73.61 Aligned_cols=102 Identities=23% Similarity=0.310 Sum_probs=66.9
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.-+|++|||.|+....+|++ +..+.|+|++..-+..+. +.+.+.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~------------------------------- 64 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR------------------------------- 64 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH-------------------------------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh-------------------------------
Confidence 38999999999999999998 678999999998775433 111110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChh--h---HHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAH--N---IVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~--N---i~~yl~~I~~~LKPGG~wI 331 (412)
...|+.++.+|+..+...-...+++|.|.-.| +-..-+ . -.++++.++++|||||.+-
T Consensus 65 -----~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 65 -----GLKNVRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp -----TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred -----cccceEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 11357889999877332101257899887666 111111 1 1268999999999999874
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.95 E-value=0.0001 Score=71.20 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.+.+.+... ++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~~---~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANVL---EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCCC---CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 555555544322 4679999999999999999999999999999999986544
No 176
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.94 E-value=0.0002 Score=69.65 Aligned_cols=107 Identities=18% Similarity=0.118 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|-|.|.++.++.+.. -.|+.+|+++.++.+++.-+..... .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~------------------------~----- 126 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE------------------------G----- 126 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT------------------------T-----
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc------------------------c-----
Confidence 46799999999999999999886 4799999999999777633211000 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCC-CccEEEEecccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~-~fD~VvT~FFID--ta~N--i~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|.+.+-. ...+ +||+|+.=.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 127 ------~~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 127 ------LDDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp ------GGSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 012358889999887543 1234 899998655421 2222 24899999999999999985
No 177
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.93 E-value=0.00025 Score=71.76 Aligned_cols=139 Identities=10% Similarity=0.004 Sum_probs=78.7
Q ss_pred HHHHHHHHHhcCcccChhHHh--hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeC
Q 015160 148 VRCIIRNIVRDWAAEGKTERD--QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEF 219 (412)
Q Consensus 148 v~s~L~q~~RDWS~eG~~ER~--~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~ 219 (412)
=.....+|++ ..|.=.-|. ..+......|.+.++ ++..|+++|||.||-+..| +.++..-.++|+
T Consensus 40 Gs~LFe~It~--lpEYYptr~E~~iL~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDI 112 (319)
T TIGR03439 40 GLKLFEEITY--SPEYYLTNDEIEILKKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDV 112 (319)
T ss_pred HHHHHHHHHc--CCccCChHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3445666664 232222221 133344455555555 4458999999999984432 223577889999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccC-CCC--CCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QVG 296 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~-~~~--~~~ 296 (412)
|..+|..+.--| +.-.+|.+. +.-+.|||.+... .+. ..+
T Consensus 113 S~~~L~~a~~~L----------------------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 113 SRSELQRTLAEL----------------------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CHHHHHHHHHhh----------------------------hhccCCCeE---------EEEEEecHHHHHhhcccccccC
Confidence 999996554221 111233321 4457788876321 111 122
Q ss_pred CccEEEEe---c-ccCChhhHHHHHHHHHH-hccCCcEEE
Q 015160 297 AWDAVVTC---F-FIDTAHNIVEYIEIISR-ILKDGGVWI 331 (412)
Q Consensus 297 ~fD~VvT~---F-FIDta~Ni~~yl~~I~~-~LKPGG~wI 331 (412)
...+|+-. + -+ +.+....+|+.|++ .|+|||.++
T Consensus 156 ~~r~~~flGSsiGNf-~~~ea~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 156 RPTTILWLGSSIGNF-SRPEAAAFLAGFLATALSPSDSFL 194 (319)
T ss_pred CccEEEEeCccccCC-CHHHHHHHHHHHHHhhCCCCCEEE
Confidence 34444321 1 12 23446789999999 999999887
No 178
>PLN02823 spermine synthase
Probab=97.92 E-value=6.2e-05 Score=76.60 Aligned_cols=109 Identities=16% Similarity=0.207 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.+.+||++|+|.|.++.++.+.. -.|+.+|++..++..++--+ |+.+ + .
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~---------~----- 153 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---E---------A----- 153 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---c---------c-----
Confidence 34689999999999999998853 36999999999997766211 1100 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni--~~yl~-~I~~~LKPGG~wI-N~GP 335 (412)
-...++.++.+|.+.+-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 154 ------~~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 154 ------FCDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ------ccCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 011347889999887543 23578999986432 21 1111 36787 8999999999997 4444
No 179
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.92 E-value=7.5e-05 Score=71.14 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+..+|||+|+|.|.++..|+++ +-+++..|+ +..+..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4468999999999999999988 678888888 55542111 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCC--cEEEEecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPG--G~wIN~GP 335 (412)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |.+|-+.+
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 134889999998532 2 3 99998877664 5566889999999999999 99885433
No 180
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.90 E-value=8.9e-06 Score=86.00 Aligned_cols=147 Identities=18% Similarity=0.234 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHHhhhhccccccccccccccccc
Q 015160 174 ILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~-~rVLvPGCGlGRLa~eLA~~Gf~V~Gn---D~S~~ML~~s~filn~~~~~~~~~I~P~i~~~ 249 (412)
-++.|.+.+|....... -.+||.|||+|.++..|..+|-.+..+ |-..... +|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qv---qfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQV---QFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhh---hhhhh-----------------
Confidence 45666776665211123 367999999999999999998654322 1111111 11111
Q ss_pred CCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEeccc-CChhhHHHHHHHHHHhccCCc
Q 015160 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 250 sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dta~Ni~~yl~~I~~~LKPGG 328 (412)
|++ |.+ +. +.|.- .+|+..+.||+|-+.-++ .=..+---||-.|.|+|||||
T Consensus 161 ----------RGv--pa~----------~~-~~~s~----rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RGV--PAM----------IG-VLGSQ----RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cCc--chh----------hh-hhccc----cccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 222 221 10 11221 224557999999766443 222222358999999999999
Q ss_pred EEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 329 ~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
+||--||..|.-.+ ...+-.++++..+.+++-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99998888771110 1223457788888888888887754
No 181
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.89 E-value=4.8e-05 Score=77.37 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=70.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
++..|||.|||||-|+..-|+.|. .|.|+|.|.-+ ..|+-+.+. +.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999998 59999999855 444433321 111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..-+.++.|...++.. | .++.|+|++-+ ||--..-+..+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi~L-P--~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDIEL-P--VEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEEec-C--ccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 1126778888877743 4 58999999863 33322223345555558999999986
No 182
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.89 E-value=0.00013 Score=57.64 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=61.0
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 193 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 193 VLvPGCGlGRLa--~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
||++|||+|+.. ..+...++.++|+|+|..|+..+...... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~-----------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG---A-----------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh---c-----------------------CC--------
Confidence 999999999954 44444456899999999998652211000 0 00
Q ss_pred CCCCCCceeEEecccccc-cCCCCCC-CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 271 SAGITEGFSMCGGDFVEV-YSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~el-y~~~~~~-~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..+.+..+|.... .. ... ..||++.....+.... ....+..+.+.|+|||.++.
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 0034555565541 22 223 4799983322222222 67899999999999999985
No 183
>PRK00536 speE spermidine synthase; Provisional
Probab=97.79 E-value=0.00018 Score=71.08 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=68.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.+||++|-|-|..+.|+.|.--+|+-+|+...++.+++-- .|.++. +.+
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~------------lP~~~~-----~~~------------ 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF------------FPHFHE-----VKN------------ 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH------------CHHHHH-----hhc------------
Confidence 567999999999999999999866999999999999776621 232221 001
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
..++.++. .+.+ ...++||+|+.=- .. -.++++.++++|+|||+++.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvDs----~~-~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICLQ----EP-DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEcC----CC-ChHHHHHHHHhcCCCcEEEE
Confidence 12344443 1222 1237899998531 11 14788999999999999997
No 184
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.77 E-value=0.00055 Score=69.42 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
.+.+|||+|||+|-++..|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 778999999999998888543
No 185
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.75 E-value=0.00017 Score=71.17 Aligned_cols=122 Identities=17% Similarity=0.182 Sum_probs=72.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHHhhhhccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~---------~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~ 243 (412)
.|.+.+.+.+... ++.+||||+||+|.+..++.+ ....+.|+|++..++..|..-+- ..
T Consensus 33 ~i~~l~~~~~~~~---~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l~------- 100 (311)
T PF02384_consen 33 EIVDLMVKLLNPK---KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--LH------- 100 (311)
T ss_dssp HHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--HT-------
T ss_pred HHHHHHHhhhhcc---ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--hh-------
Confidence 3556666655322 556899999999999888776 46789999999999876652210 00
Q ss_pred ccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC-------------
Q 015160 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------- 308 (412)
Q Consensus 244 P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------- 308 (412)
.+. ..++.+..+|.+.-... .....||+|+++ |-..
T Consensus 101 -----------------~~~-----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 101 -----------------GID-----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp -----------------THH-----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred -----------------ccc-----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccc
Confidence 000 01134566776543221 113679999887 2110
Q ss_pred ------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 309 ------TAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 309 ------ta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
....-..++..+.+.||+||..+-+-|
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 111123588999999999999876545
No 186
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.71 E-value=0.00027 Score=70.01 Aligned_cols=125 Identities=12% Similarity=0.110 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~ 257 (412)
...||..+||+||--++-||-. .+.+.|.|+|..+|..|+ .-+||--....+ ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~~~~---~~~ 161 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSRELLRG---LPP 161 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHhhcc---CCH
Confidence 4789999999999866655532 367899999999997655 134440000000 000
Q ss_pred Ccccc---ccCCC-CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccCCcEE
Q 015160 258 QLRPV---SIPDI-HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 258 qlr~v---~iPDv-~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+++.- ..+|- -.-.......+.|-..|..+-.. ..+.||+|++-. |+|... -.+.++.++..|+|||++
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLL 237 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEE
Confidence 00000 00000 00000123457888888776431 357899999753 566432 458899999999999999
Q ss_pred E
Q 015160 331 I 331 (412)
Q Consensus 331 I 331 (412)
+
T Consensus 238 f 238 (268)
T COG1352 238 F 238 (268)
T ss_pred E
Confidence 8
No 187
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00049 Score=68.62 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=76.5
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+||++|-|.|..+.++.+.. -+++.+|+...++..|+.-+-. .++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~---------------~~~~---------------- 126 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE---------------PSGG---------------- 126 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC---------------cccc----------------
Confidence 599999999999999999998 5799999999999877632210 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni--~~yl~~I~~~LKPGG~wIN 332 (412)
....++.++.+|-.++-.. ..++||+|+.--+ .-.++++ .++++.++++|+|+|+++.
T Consensus 127 ----~~dpRv~i~i~Dg~~~v~~--~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 127 ----ADDPRVEIIIDDGVEFLRD--CEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred ----cCCCceEEEeccHHHHHHh--CCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 0023578888898876542 2348999986433 2333443 4799999999999999996
No 188
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.63 E-value=0.0003 Score=77.88 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-------------C-------------------------------CeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL-------------G-------------------------------FISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-------------G-------------------------------f~V~GnD~S~~ML 224 (412)
++..++||+||.|.+..|.|.. | ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 3568999999999999999873 1 2589999999999
Q ss_pred HHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 225 ~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
..|+--+..+ ...+.+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 8887332210 111236789999998743 2223579999998
Q ss_pred --cc--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 015160 305 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 331 (412)
Q Consensus 305 --FF--IDta~Ni~~yl~~I~~~LK---PGG~wI 331 (412)
|. +....++.+..+.+.+.|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 44 3334555555555555555 776654
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00033 Score=67.31 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=83.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhccccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~ 245 (412)
.|..++++|..++- ++-+.|++|.|+|.|+.-+|+. |-.+.|+|.=+..+..|..-++.-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 46678888887763 6779999999999998888844 556699999888887666433211
Q ss_pred ccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhcc
Q 015160 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (412)
Q Consensus 246 i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LK 325 (412)
++-|+. .+ .-...+++++.||-+..+. ...+||+|..- ....+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG------Aaa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG------AAASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc------cCccccHHHHHHhhc
Confidence 111111 00 0112348899999998876 25789998653 223455666677888
Q ss_pred CCcEEEE-ecC
Q 015160 326 DGGVWIN-LGP 335 (412)
Q Consensus 326 PGG~wIN-~GP 335 (412)
|||.+|- .||
T Consensus 185 ~gGrllip~~~ 195 (237)
T KOG1661|consen 185 PGGRLLIPVGQ 195 (237)
T ss_pred cCCeEEEeecc
Confidence 8888774 555
No 190
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.49 E-value=0.00043 Score=65.73 Aligned_cols=120 Identities=21% Similarity=0.297 Sum_probs=72.5
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFS 220 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S 220 (412)
.|+.||- ||.--..||.. +.+ .+. ++..|||+-||.|.++.-+|+ ++-.|.++|+.
T Consensus 77 ~D~~kvy---------fs~rl~~Er~R----i~~----~v~-----~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N 134 (200)
T PF02475_consen 77 VDLSKVY---------FSPRLSTERRR----IAN----LVK-----PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN 134 (200)
T ss_dssp EETTTS------------GGGHHHHHH----HHT----C-------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-
T ss_pred EccceEE---------EccccHHHHHH----HHh----cCC-----cceEEEEccCCccHHHHHHhhhcCccEEEEecCC
Confidence 5666665 88876778863 332 222 567999999999999999999 78889999999
Q ss_pred HHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccE
Q 015160 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDA 300 (412)
Q Consensus 221 ~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~ 300 (412)
+..+...+ ... +.+ .....+..+.||..++.. .+.||-
T Consensus 135 p~a~~~L~---~Ni-~lN----------------------------------kv~~~i~~~~~D~~~~~~----~~~~dr 172 (200)
T PF02475_consen 135 PDAVEYLK---ENI-RLN----------------------------------KVENRIEVINGDAREFLP----EGKFDR 172 (200)
T ss_dssp HHHHHHHH---HHH-HHT----------------------------------T-TTTEEEEES-GGG-------TT-EEE
T ss_pred HHHHHHHH---HHH-HHc----------------------------------CCCCeEEEEcCCHHHhcC----ccccCE
Confidence 87764322 111 100 011237788999988753 578998
Q ss_pred EEEecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 301 VVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 301 VvT~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
|+-... +.-.++|.....++|+||+.
T Consensus 173 vim~lp----~~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 173 VIMNLP----ESSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred EEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence 765432 22337888899999998864
No 191
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.48 E-value=0.00083 Score=71.65 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=34.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHHhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G----------f~V~GnD~S~~ML~~s~fil 231 (412)
...+|||||||+|.+...++.+. -.+.|.|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45699999999999988887643 35789999999987776544
No 192
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.48 E-value=0.0008 Score=62.81 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.+.-||++|.|||-++..+-++|. .++++|.|.+.... |+. .+|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~p 94 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LYP 94 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hCC
Confidence 567899999999999999999996 58999999988632 221 122
Q ss_pred CCCCCCCCCCCceeEEeccccccc--CCCCCCCCccEEEEec-ccCCh-hhHHHHHHHHHHhccCCcEEEE--ecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-FIDTA-HNIVEYIEIISRILKDGGVWIN--LGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely--~~~~~~~~fD~VvT~F-FIDta-~Ni~~yl~~I~~~LKPGG~wIN--~GPL 336 (412)
+ ..++.||..++. ..+.....||+|+++. ++... +--.++|+.....|.+||.+|. .||+
T Consensus 95 ~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 95 G-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred C-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 2 235667776654 2223456799999996 33322 2256899999999999999986 4553
No 193
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.47 E-value=0.00058 Score=66.07 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
...+|++|||.|++..++|++- ....|+|+...-+..+ ++.+.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 3589999999999999999995 4678999988766432 2222111 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC----Chh--h-H--HHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID----TAH--N-I--VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID----ta~--N-i--~~yl~~I~~~LKPGG~wI 331 (412)
.|+.++.+|..++...-..+++.|-|.-+| =| .-+ . | ..+++.+.+.|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 158889999887643212346899887766 22 111 0 1 268999999999999985
No 194
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.47 E-value=0.0012 Score=66.25 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (412)
+++++.+.+... ++..+||.+||+|.++..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~~---pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAIK---PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCCC---CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 345555555322 45689999999999999999984 68999999999997766
No 195
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00093 Score=65.93 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=59.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999874322100
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccCCh
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (412)
....++.++.||++.+.. +.. .+++.||++ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~-~~l-~~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDF-PSL-AQPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcc-hhh-cCCCEEEEcCCCcccHH
Confidence 012458899999998754 111 168888887 567764
No 196
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.46 E-value=0.00031 Score=72.40 Aligned_cols=143 Identities=22% Similarity=0.248 Sum_probs=94.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+..++|+.|||.|....+++..+ -.++|++.+.+-+..++-..- . =+++
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~---~-------~~l~-------------------- 159 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAK---K-------AYLD-------------------- 159 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHH---H-------HHhh--------------------
Confidence 44589999999999999999987 579999999987654431110 0 0111
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe---------cCcch
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---------GPLLY 338 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~---------GPLly 338 (412)
++..+..+||..- |+.++.||.|-+.--.--+++....+++|+++|||||+||.. .+--+
T Consensus 160 --------~k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 160 --------NKCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred --------hhcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 1122355566553 345789998866544445677889999999999999999952 11111
Q ss_pred hhhhcc--CCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 339 HFADLY--GQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 339 h~~~~~--g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
|..-.. +..+....+....++..+++..||..+.
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~ 264 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLK 264 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhh
Confidence 110000 0112234556888899999999999887
No 197
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0012 Score=69.82 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=81.1
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCC-CeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccc
Q 015160 165 TERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNI 242 (412)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~-~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I 242 (412)
-||-..|.-+-..|..++. +. -++|.+|||.-+|..++.+-||. ++-+|+|.--+.+.. .-.+ +
T Consensus 28 ~ewY~~~l~l~~~i~~~~~-----p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~- 93 (482)
T KOG2352|consen 28 FEWYGALLSLSGSIMKYLS-----PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------K- 93 (482)
T ss_pred HHHHHHHHHHHHHHHHhhc-----hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------c-
Confidence 3443333334444444442 22 38999999999999999999995 899999996654322 1100 0
Q ss_pred cccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe-----cccCC--h---hh
Q 015160 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFIDT--A---HN 312 (412)
Q Consensus 243 ~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~-----FFIDt--a---~N 312 (412)
....+.|...|++.++. .+++||+|+-- +|-|. . .-
T Consensus 94 -------------------------------~~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~ 139 (482)
T KOG2352|consen 94 -------------------------------ERPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAH 139 (482)
T ss_pred -------------------------------CCcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHH
Confidence 01127888889888764 47899999843 23221 1 23
Q ss_pred HHHHHHHHHHhccCCcEEEEe
Q 015160 313 IVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 313 i~~yl~~I~~~LKPGG~wIN~ 333 (412)
+..++..|+++|+|||++|++
T Consensus 140 v~~~~~eVsrvl~~~gk~~sv 160 (482)
T KOG2352|consen 140 VSNMLDEVSRVLAPGGKYISV 160 (482)
T ss_pred hhHHHhhHHHHhccCCEEEEE
Confidence 557899999999999999873
No 198
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.39 E-value=0.00071 Score=62.17 Aligned_cols=104 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|||+|-.+.-+|+. +-.|+..|... -+-..+..+. .+.. ..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~----~N~~-------------~~----------- 95 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIE----LNGS-------------LL----------- 95 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHH----TT----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHH----hccc-------------cc-----------
Confidence 5679999999999999999999 67899999998 4432221111 0000 00
Q ss_pred CCCCCCCCCCceeEEeccccc-ccCCCCCCCCccEEEEe--cccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~e-ly~~~~~~~~fD~VvT~--FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..+++...-|.-+ +.......+.||+|+.+ .|- .......+++|.++|+|+|..+
T Consensus 96 --------~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 96 --------DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEE
T ss_pred --------cccccCcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEE
Confidence 0112222222211 10000023689999976 343 3456789999999999988854
No 199
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.26 E-value=0.0013 Score=68.07 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|||++||+|-++..+|+. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998766532210 0 00
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+..+..+|..++.. . .+.||+|+. |.-.....+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 114577888766432 1 357999865 332223578888778899999986
No 200
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.23 E-value=0.0012 Score=62.92 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++...+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++.-.+. ...+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5668999999999998877644 776 999999998776666444321110 0000 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
...+.+..|||++.......-..-|+|+.+.++= .+.+...|..+...||+|-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1237788999986321000002347887654321 234667888999999999999975444
No 201
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.23 E-value=0.00089 Score=61.04 Aligned_cols=34 Identities=15% Similarity=0.004 Sum_probs=29.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ 222 (412)
...+|||+||+.|..+..+.+++ ..|.|+|+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45799999999999999999999 78999999873
No 202
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.14 E-value=0.005 Score=62.92 Aligned_cols=132 Identities=18% Similarity=0.282 Sum_probs=88.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
...+|.|.|+||++-.+..+--+|.|++|...-++.++ .++ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 46789999999999999995446999999987765322 000 0 1
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 346 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~-- 346 (412)
++..+.|||+.- - | .=|+|+....|. |.++..++|+++++.|+|||..|-.-.++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~-~-P----~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD-T-P----KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc-C-C----CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 145678898864 2 3 235999988775 5677999999999999999999954333222 111110
Q ss_pred -------------CCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 347 -------------EDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 347 -------------~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
......+.+..|...++.+.||....
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~ 327 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCM 327 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeE
Confidence 00123456777777777777776544
No 203
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.09 E-value=0.00085 Score=61.96 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=49.2
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~ 271 (412)
.|||+.||.|..++.+|+.+-.|.|+|+++..+..++.- ..+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hN---------a~vY---------------------------- 44 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHN---------AEVY---------------------------- 44 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHH---------HHHT----------------------------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHH---------HHHc----------------------------
Confidence 699999999999999999999999999999999877622 1222
Q ss_pred CCCCCceeEEecccccccCCCCCCCC-ccEEEE
Q 015160 272 AGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVT 303 (412)
Q Consensus 272 ~~~~~~~s~~~GDF~ely~~~~~~~~-fD~VvT 303 (412)
....++.++.||+.++... ...+. +|+|+.
T Consensus 45 -Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~vFl 75 (163)
T PF09445_consen 45 -GVADNIDFICGDFFELLKR-LKSNKIFDVVFL 75 (163)
T ss_dssp -T-GGGEEEEES-HHHHGGG-B------SEEEE
T ss_pred -CCCCcEEEEeCCHHHHHhh-ccccccccEEEE
Confidence 1124589999999997531 11112 799874
No 204
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.01 E-value=0.0032 Score=58.79 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=63.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+|||+=||+|.+++|...||. .|+.+|.+...+...+.-+... .
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l----------------------------~---- 89 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKL----------------------------G---- 89 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHH----------------------------T----
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHh----------------------------C----
Confidence 456999999999999999999997 7999999998875444222211 0
Q ss_pred CCCCCCCCCceeEEecccccccCC-CCCCCCccEEEEecccCCh---hh-HHHHHHHHH--HhccCCcEEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTA---HN-IVEYIEIIS--RILKDGGVWIN 332 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta---~N-i~~yl~~I~--~~LKPGG~wIN 332 (412)
..++...+.+|+...... ......||+| |+|.. .. +.+.++.+. .+|+++|++|-
T Consensus 90 ------~~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 90 ------LEDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred ------CCcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEEE
Confidence 011256677776554321 0124789998 45543 11 356677776 78999999883
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.97 E-value=0.0031 Score=67.45 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
....+|++|||.|....++|++- ..+.|+|++..-+..+. +.+.+. .
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~---~~~~~~-----------------------~----- 395 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL---KLAGEQ-----------------------N----- 395 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH---HHHHHc-----------------------C-----
Confidence 56789999999999999999995 67899999986553222 211110 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt------a~N-i--~~yl~~I~~~LKPGG~wI 331 (412)
-.|+.++.+|+..+.. -...+++|.|..+| =|. ... + .++++.++++|||||.+-
T Consensus 396 --------l~N~~~~~~~~~~~~~-~~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 396 --------ITNFLLFPNNLDLILN-DLPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred --------CCeEEEEcCCHHHHHH-hcCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1235566667643321 12357899887766 111 111 1 268999999999999874
No 206
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.96 E-value=0.0082 Score=59.31 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 233 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~ 233 (412)
.++.+|.+..|+. .+.+|||.|||.|.-++.+... -..++++|-|..|+.+++.|+..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4788888887754 5679999999999876655442 34689999999999999988753
No 207
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.95 E-value=0.0071 Score=53.58 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~------~Gf~V~GnD~S~~ML~~s~f 229 (412)
+...|+|+|||.|+|+..||. .+..|.|+|.+..++..++.
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 567999999999999999999 58899999999998766553
No 208
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.95 E-value=0.0063 Score=62.35 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.-|||.|||.|-|.+.-|+.|. .|.++|-|. |.--|+.+.. +|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~-----------------~N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVA-----------------SN---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHh-----------------cC----------------
Confidence 567899999999999999999997 699999986 6555554331 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe---cccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
...+++..+-|-..++.. .++.|++++- +.|-...-+..|+..= +.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCccc
Confidence 112346777788777754 3789999975 3344444455666544 9999999874
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.85 E-value=0.0033 Score=65.03 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=68.7
Q ss_pred CCeEEEecCCCChhHHHHHHc--CC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 190 PPACLVPGAGLGRLALEISHL--GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
+.+|||+-||+|-.+.+++++ |. .|++||+++..+...+.-+.. + .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~----- 93 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------S----- 93 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------C-----
Confidence 468999999999999999998 53 799999999887644421110 0 0
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
..++.+..+|+..+... ..+.||+|. ||.-.....+++.+.+.+++||++.
T Consensus 94 --------~~~~~v~~~Da~~~l~~--~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 94 --------VENIEVPNEDAANVLRY--RNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred --------CCcEEEEchhHHHHHHH--hCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 01256677887765431 135799884 4543334579999999999999886
No 210
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.73 E-value=0.0062 Score=60.93 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=81.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHh--hhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSF--ILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~f--iln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+||++=|=||.++...|+.|. .|+++|.|..+|..++- .+|. +.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg----------------------------~~-- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNG----------------------------LD-- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-----------------------------C--
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC----------------------------CC--
Confidence 356999999999999999998897 69999999999976652 1221 00
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe--cccC----ChhhHHHHHHHHHHhccCCcEEEEecCcchh
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID----TAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~--FFID----ta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh 339 (412)
...+.++++|.++....-...++||+||.= -|.- ...+..+.+....++|+|||+++..-
T Consensus 173 ---------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s----- 238 (286)
T PF10672_consen 173 ---------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS----- 238 (286)
T ss_dssp ---------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-----
T ss_pred ---------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc-----
Confidence 123788999988743210124689999852 1221 12345566788889999999988421
Q ss_pred hhhccCCCCCcccCCCHHHHHHHHHhCC--CEEEEEeeccccCC
Q 015160 340 FADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKEKTIETTYT 381 (412)
Q Consensus 340 ~~~~~g~~~~~~ieLS~EEL~~ll~~~G--Feii~e~~i~s~Y~ 381 (412)
. +-.++.+++.+++...+ +++++.-.....|.
T Consensus 239 --c--------s~~i~~~~l~~~~~~~a~~~~~~~~~~~p~df~ 272 (286)
T PF10672_consen 239 --C--------SHHISPDFLLEAVAEAAREVEFIERLGQPPDFP 272 (286)
T ss_dssp ------------TTS-HHHHHHHHHHHHHHCEEEEEEE------
T ss_pred --C--------CcccCHHHHHHHHHHhCccceEeeeeccccccc
Confidence 0 22456666666555433 45555434444443
No 211
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.70 E-value=0.015 Score=59.87 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=61.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+||++|..++.|+++|..|+|+|.+. |- .-+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999664 21 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPG 327 (412)
...++....+|-..... . .+.+|.||+ |......+..+.|.+.|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p--~-~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP--P-RKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC--C-CCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01235566666555432 1 467999886 66666677788888888776
No 212
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.66 E-value=0.0086 Score=59.78 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=60.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCC
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~ 253 (412)
+++.|-..-+ -++...||+.|-|||.|+..|-.+|-.|.++|+...|+.--.-.-+.
T Consensus 46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~g-------------------- 102 (315)
T KOG0820|consen 46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQG-------------------- 102 (315)
T ss_pred HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcC--------------------
Confidence 5555544332 34778999999999999999999999999999999997422210000
Q ss_pred CcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEe
Q 015160 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (412)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~ 304 (412)
.+....++++.|||..... -.||.+|++
T Consensus 103 ------------------tp~~~kLqV~~gD~lK~d~-----P~fd~cVsN 130 (315)
T KOG0820|consen 103 ------------------TPKSGKLQVLHGDFLKTDL-----PRFDGCVSN 130 (315)
T ss_pred ------------------CCccceeeEEecccccCCC-----cccceeecc
Confidence 0112458999999987642 479999884
No 213
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.61 E-value=0.0093 Score=62.20 Aligned_cols=134 Identities=16% Similarity=0.154 Sum_probs=88.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh--hhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi--ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.+.+||++=|=||..++..|..|. .|+++|+|-..|-.|+.- ||. +.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg----------------------------~~-- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNG----------------------------LD-- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcC----------------------------CC--
Confidence 477999999999999999999999 899999999998766521 111 10
Q ss_pred CCCCCCCCCCCceeEEecccccccCCC-CCCCCccEEEEe--ccc-------CChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~-~~~~~fD~VvT~--FFI-------Dta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
.....++.+|.+++.... ....+||+|+.= -|. +...+..+.+....++|+|||+++...-
T Consensus 267 ---------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 267 ---------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred ---------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 122678999988865321 123489999852 122 1233444556677799999999995211
Q ss_pred cchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 336 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 336 Llyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
..+ .+.++-.+.|.+.+...|.....
T Consensus 338 -~~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 338 -SRH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred -CCc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 111 12234456666666667666554
No 214
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.53 E-value=0.017 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (412)
++.+|||.+||.|.=+..||.+- -.+++||+|...+....
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~ 155 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLH 155 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHH
Confidence 67899999999999999998861 27999999999886544
No 215
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.50 E-value=0.0091 Score=62.94 Aligned_cols=125 Identities=17% Similarity=0.141 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
++.+|||+=||.|.++..||+++..|.|+|++..++..|.+.... +
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n------------------------------ 338 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----N------------------------------ 338 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----c------------------------------
Confidence 456899999999999999999999999999999999988844321 1
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-HH-HHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~-~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
...|+.|.+||..++.........+|+|+ +|...- .. +.++.|.+.-.+.=+.|..-|...
T Consensus 339 -----~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 339 -----GIDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred -----CCCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 11237889898887654211124678885 575421 33 678888876666555565444311
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
..|+.. +...|+++.+-.
T Consensus 402 ---------aRDl~~-L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLAI-LASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHHH-HHhCCeEEEEEE
Confidence 234444 446788877754
No 216
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.44 E-value=0.0064 Score=62.16 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=35.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999998776
No 217
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.42 E-value=0.046 Score=56.09 Aligned_cols=146 Identities=22% Similarity=0.247 Sum_probs=99.1
Q ss_pred CcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH--hhhhccc
Q 015160 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS--FILNHTE 235 (412)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~--filn~~~ 235 (412)
||.--..||.. +.+... .+..|||+=||-|.+++.+|+.|-. |.++|+.+..+-... ..||+.
T Consensus 171 Fsprl~~ER~R----va~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v- 236 (341)
T COG2520 171 FSPRLSTERAR----VAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV- 236 (341)
T ss_pred ECCCchHHHHH----HHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-
Confidence 88877788862 333322 4679999999999999999999987 999999987763221 112211
Q ss_pred ccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHH
Q 015160 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE 315 (412)
Q Consensus 236 ~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~ 315 (412)
.+.+..+.||.+++-. ..+.+|-|+-..+-++ .+
T Consensus 237 ---------------------------------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a----~~ 270 (341)
T COG2520 237 ---------------------------------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSA----HE 270 (341)
T ss_pred ---------------------------------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcc----hh
Confidence 1126778999998754 1278998876655443 37
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 316 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|+.....+||+||+.-- |.+..+ ....+....+++.+..+.|++.....
T Consensus 271 fl~~A~~~~k~~g~iHy-----y~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~~ 319 (341)
T COG2520 271 FLPLALELLKDGGIIHY-----YEFVPE-----DDIEERPEKRIKSAARKGGYKVEVLK 319 (341)
T ss_pred hHHHHHHHhhcCcEEEE-----Eeccch-----hhcccchHHHHHHHHhhccCcceEEE
Confidence 88888899999776641 222111 01223578899999999887665543
No 218
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.35 E-value=0.01 Score=60.69 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=63.5
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+|++.|+| +|.+|..+|+ .|++|+++|.|..=+..|+.+-. .+.
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA------d~~------------------------- 214 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA------DHV------------------------- 214 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC------cEE-------------------------
Confidence 67899999875 8899999999 89999999999988765553210 000
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.....|+.+-. .+.||+| |+|+. ...+....+.||+||.++-+|-
T Consensus 215 -----------i~~~~~~~~~~~-----~~~~d~i-----i~tv~--~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 215 -----------INSSDSDALEAV-----KEIADAI-----IDTVG--PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred -----------EEcCCchhhHHh-----HhhCcEE-----EECCC--hhhHHHHHHHHhcCCEEEEECC
Confidence 000011222221 2349988 45555 5668888899999999997653
No 219
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.34 E-value=0.022 Score=55.39 Aligned_cols=168 Identities=23% Similarity=0.170 Sum_probs=84.6
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fil 231 (412)
-+|.|... |. .+-..|...+.+..-.++.+||-+|+.+|..+-.++.- .=.|.|+|||+-+. +-++
T Consensus 47 eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~---rdL~ 115 (229)
T PF01269_consen 47 EYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM---RDLL 115 (229)
T ss_dssp EEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH---HHHH
T ss_pred ceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH---HHHH
Confidence 47888764 22 35555555443333347789999999999987777665 33799999999663 2333
Q ss_pred hcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCCh-
Q 015160 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA- 310 (412)
Q Consensus 232 n~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta- 310 (412)
+-++++. .|.| +-+|.+..+.=..--+..|+| |.|.+
T Consensus 116 ~la~~R~--NIiP------------------------------------Il~DAr~P~~Y~~lv~~VDvI----~~DVaQ 153 (229)
T PF01269_consen 116 NLAKKRP--NIIP------------------------------------ILEDARHPEKYRMLVEMVDVI----FQDVAQ 153 (229)
T ss_dssp HHHHHST--TEEE------------------------------------EES-TTSGGGGTTTS--EEEE----EEE-SS
T ss_pred HHhccCC--ceee------------------------------------eeccCCChHHhhcccccccEE----EecCCC
Confidence 3333221 2222 334544321100012345555 44654
Q ss_pred -hhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 311 -HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 311 -~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
....-.+......||+||.++-. +.-.--|. ...| -+.=.+|+.. |++.||++++.-. ..+|-.|
T Consensus 154 p~Qa~I~~~Na~~fLk~gG~~~i~--iKa~siD~-t~~p---~~vf~~e~~~-L~~~~~~~~e~i~-LePy~~d 219 (229)
T PF01269_consen 154 PDQARIAALNARHFLKPGGHLIIS--IKARSIDS-TADP---EEVFAEEVKK-LKEEGFKPLEQIT-LEPYERD 219 (229)
T ss_dssp TTHHHHHHHHHHHHEEEEEEEEEE--EEHHHH-S-SSSH---HHHHHHHHHH-HHCTTCEEEEEEE--TTTSTT
T ss_pred hHHHHHHHHHHHhhccCCcEEEEE--EecCcccC-cCCH---HHHHHHHHHH-HHHcCCChheEec-cCCCCCC
Confidence 23445677777899999999842 11000110 0011 0111234444 5567999987543 3455443
No 220
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.30 E-value=0.0092 Score=61.15 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=35.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+|||++||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 47999999999999999998888999999999997766
No 221
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.28 E-value=0.0068 Score=55.70 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (412)
.+..+..-+.+. .+.+++|+|||+|-|....+..+- .|.|+|+.+..|.+.+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 344444444433 577899999999999988887776 4889999999997665
No 222
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.24 E-value=0.033 Score=55.81 Aligned_cols=61 Identities=15% Similarity=0.238 Sum_probs=40.8
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015160 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (412)
Q Consensus 164 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (412)
+.|-+.--..+++.+.+ ...-.+..|||+|||+|-.+.-|+.. + ..|+|+|.|...+..|.
T Consensus 127 RpETEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 44555433334444443 21124558999999999999887654 4 46899999999986655
No 223
>PRK10742 putative methyltransferase; Provisional
Probab=96.20 E-value=0.014 Score=57.46 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=35.6
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fil 231 (412)
.+|||.=+|+|+.++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998875544333
No 224
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.13 E-value=0.056 Score=53.98 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
.+.+|+-+||| +---++.||++ |..|.++|+++..+..|+.+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34699999999 66668888876 4678999999999988876654100
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....+|.|..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||..++
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 112458999999887642 136899997665443 55567789999999999999988
No 225
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=0.091 Score=51.31 Aligned_cols=136 Identities=19% Similarity=0.223 Sum_probs=86.2
Q ss_pred chHHHHH-HHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeC
Q 015160 144 DVDKVRC-IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEF 219 (412)
Q Consensus 144 d~~kv~s-~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~ 219 (412)
.+-.+++ |+.+-..-|--.+..|.-+ +++-|-+.+ ...++|++|-=||.=+..+|.. +-.|+++|+
T Consensus 37 ~l~el~e~t~~~~~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~ei 106 (237)
T KOG1663|consen 37 LLKELREATLTYPQPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEI 106 (237)
T ss_pred HHHHHHHHHhhcCCcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEec
Confidence 3334443 3333335566677666653 566665554 4568999998777766666655 679999999
Q ss_pred CHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC---CCCCC
Q 015160 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVG 296 (412)
Q Consensus 220 S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~---~~~~~ 296 (412)
...-...+.-+...+ ....++++.+|+..+.-.. ..+.+
T Consensus 107 d~~~~~~~~~~~k~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 107 DADAYEIGLELVKLA--------------------------------------GVDHKITFIEGPALESLDELLADGESG 148 (237)
T ss_pred ChHHHHHhHHHHHhc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCC
Confidence 987775543222111 1112367777776653210 11357
Q ss_pred CccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015160 297 AWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 297 ~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wI 331 (412)
+||.| |||.- .|=..|++..-++||+||+++
T Consensus 149 tfDfa----FvDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 149 TFDFA----FVDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred ceeEE----EEccchHHHHHHHHHHHhhcccccEEE
Confidence 89988 67754 344589999999999999998
No 226
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.69 E-value=0.046 Score=53.38 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
++..||++|.|+|.++.+|++.|-.|+++|.+..+.-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998753
No 227
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.69 E-value=0.012 Score=57.44 Aligned_cols=80 Identities=25% Similarity=0.275 Sum_probs=48.1
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
.+|||.=+|+|+.|+-||..|+.|+|+|-|+.+...-..-|++..... ++.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~---------------------------~~~-- 127 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDP---------------------------ELL-- 127 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHST---------------------------TTH--
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCc---------------------------HhH--
Confidence 489999999999999999999999999999988755444444332110 000
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEE
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~Vv 302 (412)
.....+|+++.+|..++.. ...++||+|.
T Consensus 128 -~~~~~ri~l~~~d~~~~L~--~~~~s~DVVY 156 (234)
T PF04445_consen 128 -AEAMRRIQLIHGDALEYLR--QPDNSFDVVY 156 (234)
T ss_dssp -HHHHHHEEEEES-CCCHCC--CHSS--SEEE
T ss_pred -HHHHhCCEEEcCCHHHHHh--hcCCCCCEEE
Confidence 0012358999999988543 2368999995
No 228
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.68 E-value=0.0033 Score=60.68 Aligned_cols=141 Identities=19% Similarity=0.206 Sum_probs=86.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
.+.++||+|+|-|-.+..++..--.|.+.|+|..|.. +-+++ ...+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~-------rL~kk-----------------------~ynV---- 157 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRD-------RLKKK-----------------------NYNV---- 157 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHH-------HHhhc-----------------------CCce----
Confidence 5689999999999999888877667999999999963 11111 0110
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccC-CcEEEEecCcch-hhhh-ccC
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWINLGPLLY-HFAD-LYG 345 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKP-GG~wIN~GPLly-h~~~-~~g 345 (412)
+ .+ .|... .+=+||+|.+...||...+....++-|+.+|+| .|..|-.=-|-| ||-. ..+
T Consensus 158 ---------l--~~---~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~ 220 (288)
T KOG3987|consen 158 ---------L--TE---IEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTS 220 (288)
T ss_pred ---------e--ee---hhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCC
Confidence 1 11 12211 134689887667899888899999999999999 777664111222 3322 112
Q ss_pred CCCCcc---cC---CCHHH----HHHHHHhCCCEEEEEeeccccCCC
Q 015160 346 QEDEMS---IE---LSLED----VKRVALHYGFEFEKEKTIETTYTT 382 (412)
Q Consensus 346 ~~~~~~---ie---LS~EE----L~~ll~~~GFeii~e~~i~s~Y~~ 382 (412)
+.+..+ ++ -++|| +.++++++||.++.. ...+|.-
T Consensus 221 g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw--TrlPYLC 265 (288)
T KOG3987|consen 221 GLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW--TRLPYLC 265 (288)
T ss_pred CCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh--hcCCeec
Confidence 111111 11 14443 346788999988653 2345643
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.59 E-value=0.059 Score=51.58 Aligned_cols=115 Identities=20% Similarity=0.161 Sum_probs=79.5
Q ss_pred cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccccccc
Q 015160 162 EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWN 241 (412)
Q Consensus 162 eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~ 241 (412)
-+..||-..|...++...+ ..+.|+|+|+|-|++--|..--+|.++|..+.-...|. .
T Consensus 15 L~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------e---- 72 (252)
T COG4076 15 LRDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------E---- 72 (252)
T ss_pred hhhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------h----
Confidence 3567887777766666543 46899999999999999998889999999996643332 1
Q ss_pred ccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh---HHHHHH
Q 015160 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---IVEYIE 318 (412)
Q Consensus 242 I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---i~~yl~ 318 (412)
.+++| ...+.+.+.||.++... +.-|+| .|=.|||+-= -...+.
T Consensus 73 -------------------N~~v~--------g~~n~evv~gDA~~y~f-----e~ADvv-icEmlDTaLi~E~qVpV~n 119 (252)
T COG4076 73 -------------------NLHVP--------GDVNWEVVVGDARDYDF-----ENADVV-ICEMLDTALIEEKQVPVIN 119 (252)
T ss_pred -------------------cCCCC--------CCcceEEEecccccccc-----ccccee-HHHHhhHHhhcccccHHHH
Confidence 11222 22358999999887422 445766 5667887731 234677
Q ss_pred HHHHhccCCcEEE
Q 015160 319 IISRILKDGGVWI 331 (412)
Q Consensus 319 ~I~~~LKPGG~wI 331 (412)
.+...||-.|..|
T Consensus 120 ~vleFLr~d~tii 132 (252)
T COG4076 120 AVLEFLRYDPTII 132 (252)
T ss_pred HHHHHhhcCCccc
Confidence 7777788888887
No 230
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=95.52 E-value=0.15 Score=50.78 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=76.0
Q ss_pred CeEEEecCCCC--hhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 191 PACLVPGAGLG--RLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 191 ~rVLvPGCGlG--RLa~eLA~~---Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
...||+|||+= ..++|+|++ +.+|.=+|..+--+..++-+|....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------------------------ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------------------------ 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------------------------
Confidence 37999999975 357999887 6789999999987776666653210
Q ss_pred CCCCCCCCCCCceeEEecccccccC---CCCCCCCcc-----EEEE---ecccCChhhHHHHHHHHHHhccCCcEEEE--
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYS---DPSQVGAWD-----AVVT---CFFIDTAHNIVEYIEIISRILKDGGVWIN-- 332 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~---~~~~~~~fD-----~VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-- 332 (412)
.....++.+|+++.-. .|...+-+| +|+- ..|+...++....+.++...|.||.+++-
T Consensus 120 ---------~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 ---------RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp ---------TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred ---------CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 0125688888886321 111123344 2322 24787777889999999999999999973
Q ss_pred ecC----cc-----hhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 333 LGP----LL-----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 333 ~GP----Ll-----yh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
+.. .. -.|.. +..+ ..--|.+||.+++. ||++++.
T Consensus 191 ~t~d~~p~~~~~~~~~~~~--~~~~--~~~Rs~~ei~~~f~--g~elveP 234 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ--AGSP--GRPRSREEIAAFFD--GLELVEP 234 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH--CCS------B-HHHHHHCCT--TSEE-TT
T ss_pred cCCCCCHHHHHHHHHHHHc--CCCC--ceecCHHHHHHHcC--CCccCCC
Confidence 111 00 00110 1111 23459999999994 9999873
No 231
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.44 E-value=0.57 Score=46.23 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.0
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (412)
+||++-||.|.+..-|.+.|+++ .++|+....+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 69999999999999999999984 68999998875433
No 232
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.12 Score=48.92 Aligned_cols=39 Identities=23% Similarity=-0.031 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s 227 (412)
.+.++||+=+|+|-|++|-+.||. .|+.+|.+...+.+.
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l 82 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKIL 82 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHH
Confidence 467999999999999999999996 699999999876543
No 233
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.17 E-value=0.15 Score=47.82 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=78.5
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|||+|+|.|--+.-||-. -.+++-+|-..--..+-+.+.. ...+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~----------------------------~L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR----------------------------ELGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH----------------------------HHT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH----------------------------HhCC-----
Confidence 8999999999998887665 4689999999877654333221 1111
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEE-ecCcchhhhhccCCCC
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQED 348 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN-~GPLlyh~~~~~g~~~ 348 (412)
.|+..+++...+ . ...+.||+|++--+-. +...++-+..+||+||.+|- -||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~~----l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVAP----LDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSSS----HHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhcC----HHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 236777877666 1 1358999998765533 55778888899999999986 3431
Q ss_pred CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 349 EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 349 ~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.+=..++.+..++..|.+...
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEee
Confidence 111245556667777777665
No 234
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.38 Score=45.83 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=36.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~ 228 (412)
+++.|++-...-......-+|++|||.|-..-.|++. | --..+.|+++..+.+..
T Consensus 28 LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl 85 (209)
T KOG3191|consen 28 LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATL 85 (209)
T ss_pred HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHH
Confidence 5566654221111113457999999999998888876 3 34569999999986543
No 235
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.83 E-value=0.091 Score=45.82 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=44.2
Q ss_pred HHHHhcCcccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015160 153 RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (412)
Q Consensus 153 ~q~~RDWS~eG~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (412)
+.++..|.+.-.+++- .|. -|..+|..+..... ..+...-.|+|||.|-|++-|.+.||.=.|+|.=
T Consensus 20 ~~lv~~W~E~TdP~K~-VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 20 RWLVDNWPESTDPQKH-VFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred HHHHHhCcccCCchhh-HHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 4677789765444442 121 13344444332111 1256789999999999999999999999999953
No 236
>PRK13699 putative methylase; Provisional
Probab=94.79 E-value=0.21 Score=48.11 Aligned_cols=77 Identities=13% Similarity=0.176 Sum_probs=50.9
Q ss_pred eEEecccccccCCCCCCCCccEEEEe--cccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCcchhhhhc
Q 015160 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (412)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a---------~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~ 343 (412)
.+..||.+++.. .-.++++|+|+|- |++.. . +=..+++++++++|||||.++.+... +
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~--~---- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW--N---- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc--c----
Confidence 467889887532 1236899999997 55420 0 11346789999999999999864211 0
Q ss_pred cCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 344 ~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
....+..++++.||.+...
T Consensus 76 -----------~~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEeeE
Confidence 1234566788999997653
No 237
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.70 E-value=0.074 Score=54.43 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=40.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
.+++.+.+.++.. +. +|||+=||.|.++..||+.+-.|+|+|.+..|+..|+
T Consensus 184 ~l~~~~~~~l~~~---~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 184 KLYEQALEWLDLS---KG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHCTT----TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhhcC---CC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 3555555555432 23 7999999999999999999999999999999998776
No 238
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.72 Score=45.38 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|.|+|.++--|. +-|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~---~kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLH---WKL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccC---HhH--------------------
Confidence 35555554 3311 2677999999999999999999997 6999999995542 101
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEE-ecccCChhhHHHHHHHHHHhccCCcEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-CFFIDTAHNIVEYIEIISRILKDGGVW 330 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT-~FFIDta~Ni~~yl~~I~~~LKPGG~w 330 (412)
+.+ .|- +.|-.-+++.+... .-.+..|++++ .-||. +...|..+..+|+|||-.
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 22333344433221 11235566654 34654 456789999999999999
Q ss_pred EE-ecCcchhhhhccCC----CCCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 331 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 331 IN-~GPLlyh~~~~~g~----~~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
|- +=|.+-.-.+..|. .+........+++...++..||.+....
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 96 45542211111110 1111234577899999999999998743
No 239
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=94.42 E-value=0.7 Score=44.66 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=82.1
Q ss_pred CCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
..+++|+|+|.|--+.-||- ..-.|+-+|-.--=. +|+-.-.. ...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~---~FL~~~~~-------------------------eL~---- 115 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI---AFLREVKK-------------------------ELG---- 115 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH---HHHHHHHH-------------------------HhC----
Confidence 57999999999999988773 344577777654333 23221110 011
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCC-ccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~ 346 (412)
-+|+.++.+-..++-. ... ||+|++--|- ++...++-...+||+||.++. |.+...
T Consensus 116 -------L~nv~i~~~RaE~~~~----~~~~~D~vtsRAva----~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 116 -------LENVEIVHGRAEEFGQ----EKKQYDVVTSRAVA----SLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred -------CCCeEEehhhHhhccc----ccccCcEEEeehcc----chHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 1246777777666432 123 9999765442 355677888899999999874 222211
Q ss_pred CCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 347 ~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
.=-..|.+..+...||.+++......++...
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~ 203 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDG 203 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCC
Confidence 1124567777888899999876545555443
No 240
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=94.33 E-value=0.086 Score=46.56 Aligned_cols=75 Identities=29% Similarity=0.339 Sum_probs=49.2
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccCChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCccc
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSI 352 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni----~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~i 352 (412)
.+.+..||+.+... .....||+|+-==|- ...|. .++|+.|+++++|||++.. |.
T Consensus 32 ~L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys------------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS------------- 90 (124)
T ss_dssp EEEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S--------------
T ss_pred EEEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee-------------
Confidence 37899999987543 123678877422110 12232 4799999999999999986 21
Q ss_pred CCCHHHHHHHHHhCCCEEEEEe
Q 015160 353 ELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 353 eLS~EEL~~ll~~~GFeii~e~ 374 (412)
+..-|++.|.++||++.+..
T Consensus 91 --~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 --SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp ---BHHHHHHHHHCTEEEEEEE
T ss_pred --chHHHHHHHHHcCCEEEEcC
Confidence 12358899999999998755
No 241
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.31 E-value=0.4 Score=49.97 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=71.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~-----------------------------------------V~GnD~S~~ML~~s~ 228 (412)
+..++||=||.|.++.|.|..|-+ ..|.|++..|+..|+
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak 271 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK 271 (381)
T ss_pred CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence 357999999999999999999842 569999999998877
Q ss_pred hhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-c-
Q 015160 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F- 306 (412)
Q Consensus 229 filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-F- 306 (412)
.| +..+ ...+.+.|.++|+..+.. + -+.+|+||++= |
T Consensus 272 --~N-A~~A-----------------------------------Gv~d~I~f~~~d~~~l~~-~--~~~~gvvI~NPPYG 310 (381)
T COG0116 272 --AN-ARAA-----------------------------------GVGDLIEFKQADATDLKE-P--LEEYGVVISNPPYG 310 (381)
T ss_pred --HH-HHhc-----------------------------------CCCceEEEEEcchhhCCC-C--CCcCCEEEeCCCcc
Confidence 22 1111 223448999999998864 2 27899999883 2
Q ss_pred --cCChhhHHHH----HHHHHHhccCCcEEEEec
Q 015160 307 --IDTAHNIVEY----IEIISRILKDGGVWINLG 334 (412)
Q Consensus 307 --IDta~Ni~~y----l~~I~~~LKPGG~wIN~G 334 (412)
|.+...+... .+++.+.++--+.+|-.+
T Consensus 311 eRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 311 ERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred hhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 5444434422 334445566666666443
No 242
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.29 E-value=0.66 Score=45.07 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=87.7
Q ss_pred eEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 192 ACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
+|+++=||.|.+..-|.+.||. |.++|++.....+.+ .|+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~--~N~~------------------------------------ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK--ANFP------------------------------------ 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH--HHHT------------------------------------
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh--hccc------------------------------------
Confidence 7899999999999999999997 569999998765433 2321
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-EecCc
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLGPL 336 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~GPL 336 (412)
....+|+.++....-.. ..|+++..+ +-|.-..+...+-.+.+.+||.-+++ |+-.|
T Consensus 44 --------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l 114 (335)
T PF00145_consen 44 --------EVICGDITEIDPSDLPK-DVDLLIGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGL 114 (335)
T ss_dssp --------EEEESHGGGCHHHHHHH-T-SEEEEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGG
T ss_pred --------ccccccccccccccccc-cceEEEeccCCceEeccccccccccccchhhHHHHHHHhhccceEEEeccccee
Confidence 12334555443210001 477776554 22332335544444445678976666 44333
Q ss_pred chhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEcCc
Q 015160 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKKSV 404 (412)
Q Consensus 337 lyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~~~ 404 (412)
+-.- -.-..+.+.+.|++.|+.+...-.....|+.-. .-...|+|+.|+..
T Consensus 115 ~~~~-----------~~~~~~~i~~~l~~lGY~v~~~vlna~~yGvPQ------~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 115 LSSK-----------NGEVFKEILEELEELGYNVQWRVLNAADYGVPQ------NRERVFIVGIRKDL 165 (335)
T ss_dssp GTGG-----------GHHHHHHHHHHHHHTTEEEEEEEEEGGGGTSSB------E-EEEEEEEEEGGG
T ss_pred eccc-----------cccccccccccccccceeehhccccHhhCCCCC------ceeeEEEEEECCCC
Confidence 2210 013468888999999998875554455665432 23678899999854
No 243
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.26 E-value=1 Score=43.05 Aligned_cols=122 Identities=18% Similarity=0.147 Sum_probs=75.6
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCC
Q 015160 193 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~ 270 (412)
|.|+||-=|.|+..|+++|. .|.+.|++..-|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 67999999999999999998 6899999999987666433211
Q ss_pred CCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCc
Q 015160 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (412)
Q Consensus 271 ~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~ 350 (412)
...+.+....||=++... ..+..|+||-+=. -..-+.+-|+.....++..-.||- -|
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lIL-qP--------------- 101 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLIL-QP--------------- 101 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EE---------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEEE-eC---------------
Confidence 112347788888555433 1233788875421 011144555555555555445552 22
Q ss_pred ccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 351 SIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.-...+|++.|.+.||.|+.|..
T Consensus 102 --~~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 102 --NTHAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp --SS-HHHHHHHHHHTTEEEEEEEE
T ss_pred --CCChHHHHHHHHHCCCEEEEeEE
Confidence 23578999999999999999874
No 244
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=94.21 E-value=0.6 Score=47.98 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHH
Q 015160 188 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 228 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf----~V~GnD~S~~ML~~s~ 228 (412)
.++.+|||+.++-|.=+..||.... .|+++|.|..=|-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4678999999999999888888865 4899999997764433
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.00 E-value=0.46 Score=45.63 Aligned_cols=132 Identities=20% Similarity=0.152 Sum_probs=79.9
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
+.+|.+.+.- -+++..|+|+||--|.-+..++++.-. |.|+|+-+ | +
T Consensus 33 L~el~~k~~i--~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p-~------------~--------------- 82 (205)
T COG0293 33 LLELNEKFKL--FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP-M------------K--------------- 82 (205)
T ss_pred HHHHHHhcCe--ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc-c------------c---------------
Confidence 4455554532 236789999999999999999888543 88999866 2 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC-----CCCCCCccEEEEecc--------cCChhh---HHH
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IVE 315 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~-----~~~~~~fD~VvT~FF--------IDta~N---i~~ 315 (412)
.-.++.++++||++-... .......|+|++=.. +|.+.- ...
T Consensus 83 ----------------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~ 140 (205)
T COG0293 83 ----------------------PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCEL 140 (205)
T ss_pred ----------------------cCCCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHH
Confidence 001267888888852210 012334699986321 232211 123
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEee
Q 015160 316 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~ 375 (412)
.++....+|+|||.|+.- . |. | =..+++...+++ .|+.++-..
T Consensus 141 a~~~a~~vL~~~G~fv~K---~--fq---g--------~~~~~~l~~~~~-~F~~v~~~K 183 (205)
T COG0293 141 ALEFALEVLKPGGSFVAK---V--FQ---G--------EDFEDLLKALRR-LFRKVKIFK 183 (205)
T ss_pred HHHHHHHeeCCCCeEEEE---E--Ee---C--------CCHHHHHHHHHH-hhceeEEec
Confidence 456666899999999961 1 11 1 124566666655 588887553
No 246
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.90 E-value=0.33 Score=52.46 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=65.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
.++.+||+.|||. |..+...|+. |..|.+.|.+..=+..++-+ . + ....+-+ ..++....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-G-A---~~v~i~~---------~e~~~~~~---- 224 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-G-A---EFLELDF---------EEEGGSGD---- 224 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-C-C---eEEEecc---------cccccccc----
Confidence 3678999999996 5566666655 99999999999887655421 0 0 0000000 00000000
Q ss_pred CCCCCCCCCCCceeEEecccc----cccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015160 266 DIHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~----ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~G 334 (412)
.+. ..+. .|+. +.+. ...+.+|+|+++-.+...+...-..+...+.+||||+.+.+|
T Consensus 225 -------gya--~~~s-~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 -------GYA--KVMS-EEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred -------chh--hhcc-hhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 000 0000 1111 1111 012469999999887654333334589999999999999754
No 247
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.89 E-value=0.095 Score=45.33 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.6
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (412)
.|||+|||.|.++..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 3899999999999999999875 999999999986444
No 248
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=93.82 E-value=0.026 Score=49.11 Aligned_cols=77 Identities=21% Similarity=0.383 Sum_probs=41.9
Q ss_pred CccEEEEec---ccCC--h-hhHHHHHHHHHHhccCCcEEEEecCcchh-hhhccCCC-----CCcccCCCHHHHHHHHH
Q 015160 297 AWDAVVTCF---FIDT--A-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 364 (412)
Q Consensus 297 ~fD~VvT~F---FIDt--a-~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh-~~~~~g~~-----~~~~ieLS~EEL~~ll~ 364 (412)
+||+|++.- +|+. . +-+..+|+.|+.+|+|||++| +-|--|. |....... .-..+++-.++....+.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478886542 3332 2 348899999999999999999 4454443 11110000 01257788888888887
Q ss_pred h--CCCEEEEEe
Q 015160 365 H--YGFEFEKEK 374 (412)
Q Consensus 365 ~--~GFeii~e~ 374 (412)
. +||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
No 249
>KOG2730 consensus Methylase [General function prediction only]
Probab=93.75 E-value=0.056 Score=52.71 Aligned_cols=39 Identities=10% Similarity=0.152 Sum_probs=35.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
...|+|.-||-|.-+..+|.+|-.|.++|+++.-+.+|+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 457999999999999999999999999999998887776
No 250
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.70 E-value=0.26 Score=49.48 Aligned_cols=133 Identities=21% Similarity=0.198 Sum_probs=84.7
Q ss_pred cCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcc
Q 015160 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 234 (412)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~filn~~ 234 (412)
+|.-.=..--+..|.|=+..|...+.- +++.+||+-|.|.|.++..||+.= =++...||-..-. ...+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~--- 147 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKAL--- 147 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHH---
Confidence 355433333456787777777777653 378899999999999999999873 3677888844221 1111
Q ss_pred cccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHH
Q 015160 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (412)
Q Consensus 235 ~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (412)
.+|. .--+ ++++.+..-|....-. ......+|+| |||.. +.-
T Consensus 148 ---eeFr-------------------~hgi----------~~~vt~~hrDVc~~GF-~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 148 ---EEFR-------------------EHGI----------GDNVTVTHRDVCGSGF-LIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ---HHHH-------------------HhCC----------CcceEEEEeecccCCc-cccccccceE----EEcCC-Chh
Confidence 1221 1112 2346667766554211 1124567777 78864 466
Q ss_pred HHHHHHHHhccCCc-EEEEecCcc
Q 015160 315 EYIEIISRILKDGG-VWINLGPLL 337 (412)
Q Consensus 315 ~yl~~I~~~LKPGG-~wIN~GPLl 337 (412)
+.+.-.+++||.+| ++.+|.|.+
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHHH
Confidence 88899999999866 888898864
No 251
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.59 E-value=0.44 Score=46.08 Aligned_cols=166 Identities=22% Similarity=0.250 Sum_probs=88.8
Q ss_pred HHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhh
Q 015160 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~filn 232 (412)
=+|.|-.. |. .+-..+..-+.+..-+++.+||=+|+-+|..+-.++.- | =.+.|+|||+.+. +-+|+
T Consensus 50 eYR~Wnp~----RS----KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RS----KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hh----HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 32 23344443333222347889999999999987766654 3 2589999999986 23455
Q ss_pred cccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccc--cCCCCCCCCccEEEEecccCCh
Q 015160 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (412)
Q Consensus 233 ~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (412)
-+.+.. .|+| +.+|.+.. |. .--+..|+| |.|.|
T Consensus 119 ~a~~R~--Ni~P------------------------------------IL~DA~~P~~Y~--~~Ve~VDvi----y~DVA 154 (231)
T COG1889 119 VAEKRP--NIIP------------------------------------ILEDARKPEKYR--HLVEKVDVI----YQDVA 154 (231)
T ss_pred HHHhCC--Ccee------------------------------------eecccCCcHHhh--hhcccccEE----EEecC
Confidence 444321 3333 22343321 11 011335555 55655
Q ss_pred h-h-HHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCC
Q 015160 311 H-N-IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (412)
Q Consensus 311 ~-N-i~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d 383 (412)
+ | ..=.+.....-||+||..+-. +.-.--+. ..+ +-+.=.+|+..|. ..||++.+.-. ..+|-.|
T Consensus 155 Qp~Qa~I~~~Na~~FLk~~G~~~i~--iKArSIdv-T~d---p~~vf~~ev~kL~-~~~f~i~e~~~-LePye~D 221 (231)
T COG1889 155 QPNQAEILADNAEFFLKKGGYVVIA--IKARSIDV-TAD---PEEVFKDEVEKLE-EGGFEILEVVD-LEPYEKD 221 (231)
T ss_pred CchHHHHHHHHHHHhcccCCeEEEE--EEeecccc-cCC---HHHHHHHHHHHHH-hcCceeeEEec-cCCcccc
Confidence 2 2 334677778899999966521 11000111 001 1122234555544 66899976542 3456554
No 252
>PRK11524 putative methyltransferase; Provisional
Probab=93.09 E-value=0.69 Score=45.74 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.1
Q ss_pred eeEEecccccccCCCCCCCCccEEEEe--cccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta--------------~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
-.++.||.+++.. ....++||+|+|- |++... .-+.+++..++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4678899888532 1235799999994 665210 1134688999999999999874
No 253
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.05 E-value=0.29 Score=52.97 Aligned_cols=116 Identities=21% Similarity=0.214 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
.|+..|..+.|+........|+++|+|.|=|+-.. ..+--.+.++|=.+..+..-. |. +
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~--n---------- 415 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NR--N---------- 415 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hh--c----------
Confidence 47888888888765444567789999999886443 222334566666554443211 10 0
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec---ccCChhhHHHHHHHHHHh
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 323 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~ 323 (412)
.+ .-..++.++-+||+++.. | .++-|++|+-. |=|..- =.+.|.-+-+.
T Consensus 416 --------~~----------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNEL-SPECLDG~q~f 467 (649)
T KOG0822|consen 416 --------FE----------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNEL-SPECLDGAQKF 467 (649)
T ss_pred --------hh----------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccC-CHHHHHHHHhh
Confidence 00 012347889999999863 2 47889998764 545432 23899999999
Q ss_pred ccCCcEEE
Q 015160 324 LKDGGVWI 331 (412)
Q Consensus 324 LKPGG~wI 331 (412)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
No 254
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.03 E-value=0.42 Score=48.64 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=33.0
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+. |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 9898888776 76 5999999999976544
No 255
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.97 E-value=0.046 Score=45.34 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=40.6
Q ss_pred EEecCCCChhHHHHHHc----C-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 194 LVPGAGLGRLALEISHL----G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 194 LvPGCGlGRLa~eLA~~----G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
|++|+..|+-+..|++. + ..+.++|.-.. . ....+. ++..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~---~~~~~~-------------------------~~~~------ 45 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-D---EQAQEI-------------------------IKKA------ 45 (106)
T ss_dssp --------------------------EEEESS-----------------------------------------G------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-c---cccchh-------------------------hhhc------
Confidence 67898899987777653 2 26888888774 0 000000 0000
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCC---hhhHHHHHHHHHHhccCCcEEE
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni~~yl~~I~~~LKPGG~wI 331 (412)
....++.++.||+.+.... ...+++|+| |||- .+.+...++.+...|+|||++|
T Consensus 46 ----~~~~~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 46 ----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp ----GG-BTEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred ----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 1123488999999876421 112456655 6774 3667788999999999999987
No 256
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.88 E-value=0.18 Score=48.47 Aligned_cols=76 Identities=24% Similarity=0.173 Sum_probs=50.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCC--CC-CcccCCCHHHHHHHHHhCCCEEEE
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ--ED-EMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~--~~-~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
.++|.+++.-+|.++ +..+....+++.|||||+++- .-|-.+- |. .+ ..---++..-+++..+++||+++-
T Consensus 129 ~~~yhdmh~k~i~~~-~A~~vna~vf~~LKPGGv~~V----~dH~a~p-G~~~~dt~~~~ri~~a~V~a~veaaGFkl~a 202 (238)
T COG4798 129 AQNYHDMHNKNIHPA-TAAKVNAAVFKALKPGGVYLV----EDHRADP-GSGLSDTITLHRIDPAVVIAEVEAAGFKLEA 202 (238)
T ss_pred chhhhhhhccccCcc-hHHHHHHHHHHhcCCCcEEEE----EeccccC-CCChhhhhhhcccChHHHHHHHHhhcceeee
Confidence 345555555455533 456889999999999999983 3343321 21 11 112246888899999999999999
Q ss_pred Eeecc
Q 015160 373 EKTIE 377 (412)
Q Consensus 373 e~~i~ 377 (412)
|+.+.
T Consensus 203 eS~il 207 (238)
T COG4798 203 ESEIL 207 (238)
T ss_pred eehhh
Confidence 88554
No 257
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=92.39 E-value=0.17 Score=50.89 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=68.0
Q ss_pred HhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccc
Q 015160 167 RDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (412)
Q Consensus 167 R~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i 246 (412)
|-...+...++|... | .+.-+||.|||-|....- .-..-+.|.|++...+-.|+ +.
T Consensus 29 r~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak-------~~--------- 84 (293)
T KOG1331|consen 29 RAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAK-------RS--------- 84 (293)
T ss_pred ccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcC--CCcceeeecchhhhhccccc-------cC---------
Confidence 433444455555543 2 356799999999976221 11224678888876542211 11
Q ss_pred cccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecc---cCChhhHHHHHHHHHHh
Q 015160 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRI 323 (412)
Q Consensus 247 ~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yl~~I~~~ 323 (412)
+ .-.++.+|++.+. ....+||++++.-+ +-|..-....++...++
T Consensus 85 ----------~-------------------~~~~~~ad~l~~p---~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~ 132 (293)
T KOG1331|consen 85 ----------G-------------------GDNVCRADALKLP---FREESFDAALSIAVIHHLSTRERRERALEELLRV 132 (293)
T ss_pred ----------C-------------------CceeehhhhhcCC---CCCCccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 0 0135667888764 34689998887654 44555567889999999
Q ss_pred ccCCcEE
Q 015160 324 LKDGGVW 330 (412)
Q Consensus 324 LKPGG~w 330 (412)
|||||--
T Consensus 133 lrpgg~~ 139 (293)
T KOG1331|consen 133 LRPGGNA 139 (293)
T ss_pred hcCCCce
Confidence 9999974
No 258
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.09 E-value=0.88 Score=50.09 Aligned_cols=71 Identities=24% Similarity=0.279 Sum_probs=51.7
Q ss_pred ceeEEecccccccCCCCCCCCccEEEEecccC---ChhhH----HHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCC
Q 015160 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (412)
Q Consensus 277 ~~s~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~ 349 (412)
.+.++.||+.+... .-...+|+| |+| .+.|. .++|+.|+++++|||+|+.+
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~---------------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLATF---------------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe----------------
Confidence 37789999987543 112456766 556 33332 47899999999999999962
Q ss_pred cccCCCHHHHHHHHHhCCCEEEEE
Q 015160 350 MSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 350 ~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
-+..-|++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 24567888999999999864
No 259
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.95 E-value=1 Score=47.51 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=28.8
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML~~ 226 (412)
.+.+|++.|+|. |+.+..++ ..|..|..+|.++.-+..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~ 240 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQ 240 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHH
Confidence 577999999995 66655444 459999999999866543
No 260
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.84 E-value=0.6 Score=46.51 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.||| +|.++..+|+. |. .|.+.|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46789999876 57777777765 88 5889999987775444
No 261
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=91.77 E-value=0.95 Score=44.43 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (412)
++.+||+-|||. |..+..+|+. |+ .+.+.+-|..+..
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~ 204 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA 204 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 467899988876 7888878764 88 7999999988764
No 262
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=91.57 E-value=0.73 Score=44.74 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| +|.++..+|+ +|..|.+.+-|..++..+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 56789998887 5889888887 499999999999886433
No 263
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.31 E-value=3.6 Score=41.79 Aligned_cols=55 Identities=13% Similarity=-0.014 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fil 231 (412)
+++++-+.+... ++..++|-=+|.|.++..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~~---~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNIK---PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCcC---CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 445555555322 4568999999999999999876 257999999999998776443
No 264
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=90.79 E-value=1.8 Score=45.42 Aligned_cols=109 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f-~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
.-.+||++|-|-|--+.||-+.- + +++-+|+.+.|+..++... +.++ -|+-+.
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~--vlr~------------~N~~sf----------- 343 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHAT--VLRA------------LNQGSF----------- 343 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhh--Hhhh------------hccCCc-----------
Confidence 45689999999999999999884 4 6999999999998777211 0000 011011
Q ss_pred CCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhh-H-----HHHHHHHHHhccCCcEEEE
Q 015160 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-I-----VEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 267 v~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i-----~~yl~~I~~~LKPGG~wIN 332 (412)
...+++.+..|...+-. ...+.||+|+--+ .|.... + .++..-..+.|+++|++|-
T Consensus 344 -------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 -------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred -------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 12347778888777654 2357899886433 332211 1 2466677788999999994
No 265
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.49 E-value=0.25 Score=45.75 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHh
Q 015160 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 229 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~f 229 (412)
+..+.+|+|+|-||.+..-|+.| +..+|+|+.+-.+..|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 66799999999999999999999 789999999977766663
No 266
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=89.09 E-value=1.7 Score=40.21 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|..+..+++ .|..|.+.+-+.....
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~ 172 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLE 172 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 56799999998 4888777776 4899999999986653
No 267
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.96 E-value=0.84 Score=47.13 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.6
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (412)
++.+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777666554 599999999987543
No 268
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.89 E-value=8.6 Score=38.73 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=29.8
Q ss_pred EEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015160 193 CLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (412)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (412)
||++=||.|.+..-|.+.||++. ++|+......+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 57888999999999999999865 7999998765433
No 269
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=88.64 E-value=1.3 Score=45.03 Aligned_cols=114 Identities=19% Similarity=0.218 Sum_probs=71.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 188 ESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
....+|||+|-|-|....+.+++ -. +.-+|+...-+..+.. + +
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~----------y-----------------------~ 165 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQ----------Y-----------------------L 165 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHH----------H-----------------------h
Confidence 36779999999999999999998 33 3344555433222221 0 1
Q ss_pred CCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEec--ccCChhhH--HHHHHHHHHhccCCcEEEEecCcch
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNI--VEYIEIISRILKDGGVWINLGPLLY 338 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni--~~yl~~I~~~LKPGG~wIN~GPLly 338 (412)
|.+..+ -...++.++-||=..++.. ...+.||+|+|-- -+-.+.++ ..|++.+.+.||+||+.+..|-.+|
T Consensus 166 p~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 166 PTLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 111100 0122467778886665542 2268999998753 22233343 3699999999999999999877665
No 270
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=88.29 E-value=4.8 Score=39.58 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=69.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCC
Q 015160 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (412)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn 251 (412)
||...+.+.+. .++.|||.+|=|.|-.+-.+-++- +.=.-+|.-+.-+.- +....
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~kr---mr~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKR---MRDWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHH---HHhcc-----------------
Confidence 57777666554 267899999999998877765543 333445555544311 00000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
+ ....++-.+.|-..++-.. -.++.||-|.---|-..-+++.++.+.+.++|||||++-
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0112344455544443211 125779999654454555788899999999999999996
Q ss_pred E
Q 015160 332 N 332 (412)
Q Consensus 332 N 332 (412)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 3
No 271
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=88.01 E-value=2.1 Score=42.74 Aligned_cols=38 Identities=11% Similarity=-0.197 Sum_probs=27.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~---Gf~V~GnD~S~~ML~~ 226 (412)
++.+||+.|||. |.++..+|++ |..|.++|.+..-+..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~ 204 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL 204 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH
Confidence 567999999864 5556677763 4579999998765543
No 272
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.96 E-value=2.9 Score=41.61 Aligned_cols=37 Identities=11% Similarity=-0.071 Sum_probs=28.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|.++..+|+. |..|.+++.+..=+.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~ 203 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARR 203 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence 56799999965 56667777665 888999998876543
No 273
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.85 E-value=2.4 Score=42.36 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=24.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 219 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~ 219 (412)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567899999874 7777777765 889999886
No 274
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.77 E-value=1.8 Score=42.45 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|.++|+|+ |.++..|++.|+.|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987653
No 275
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=87.71 E-value=7.3 Score=39.43 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=85.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~ 268 (412)
..+++++=||.|.+..-|...||++ .++|+..+.+.+-+ .|+. .
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~--~n~~----------~----------------------- 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK--ANFP----------H----------------------- 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH--HhCC----------C-----------------------
Confidence 4689999888888888888889985 59999998875433 2221 0
Q ss_pred CCCCCCCCceeEEecccccccCCCCCCCCccEEEEec-------------ccCChhhHHHHHHHHHHhccCCcEEE-Eec
Q 015160 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-------------FIDTAHNIVEYIEIISRILKDGGVWI-NLG 334 (412)
Q Consensus 269 p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~F-------------FIDta~Ni~~yl~~I~~~LKPGG~wI-N~G 334 (412)
-.+..+|..++.........+|+|+.-+ +-|+-..+.-.+..+-..++|.-.++ |+.
T Consensus 48 ---------~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~ 118 (328)
T COG0270 48 ---------GDIILGDIKELDGEALRKSDVDVLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRPKFFVLENVK 118 (328)
T ss_pred ---------CceeechHhhcChhhccccCCCEEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCCCEEEEecCc
Confidence 0112234333322100001566666432 44555556555666667788833333 332
Q ss_pred CcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEEeeccccCCCCcccccccccceEEEEEEEc
Q 015160 335 PLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQNRYFTAFWTMRKK 402 (412)
Q Consensus 335 PLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e~~i~s~Y~~d~~sm~~~~Y~~~f~VarK~ 402 (412)
-|+.+ -.-.+++|++.|++.||.+...-.....|.... .-..+|.|+.++
T Consensus 119 gl~~~------------~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ------~ReRvfiig~~~ 168 (328)
T COG0270 119 GLLSS------------KGQTFDEIKKELEELGYGVEFNILNAADYGVPQ------SRERVFIVGFRR 168 (328)
T ss_pred hHHhc------------CchHHHHHHHHHHHcCCcchHheeeHHhcCCCC------CccEEEEEEecC
Confidence 23222 123789999999999998433222233443221 125667776543
No 276
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=87.60 E-value=0.79 Score=47.53 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
++.+=+..|...... .+++.-|+||=.|||.|.+--|..|.-|.|-|+.+-|+-
T Consensus 191 SmDAeLSli~AN~Am--v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 191 SMDAELSLIMANQAM--VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred ccchhHHHHHhhhhc--cCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 344556666665432 237889999999999999999999999999999999863
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=87.42 E-value=1.6 Score=39.98 Aligned_cols=51 Identities=25% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++......|+
T Consensus 180 l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 180 LIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 44444444432 5679999999999999999999999999999998876553
No 278
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.33 E-value=46 Score=35.83 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=33.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (412)
...+++|+=||.|.+..-|-..|+.| .++|+......+.+
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 46799999999999998888889975 58999998765433
No 279
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=86.56 E-value=2.2 Score=42.98 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5779999998 599999988876 999999998876653
No 280
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=86.48 E-value=2.4 Score=41.60 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=28.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~ 207 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 56789998876 57788888776 75 78888888766543
No 281
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=86.30 E-value=1.3 Score=43.90 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=52.4
Q ss_pred cchHHHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 015160 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 220 (412)
Q Consensus 143 ~d~~kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S 220 (412)
.|-..++..++++.+--. ...||-..+..+.+++....+ ...+|||+|||+==|++.+... +..+.|.|+.
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 444444544554444332 345676666666666665544 4679999999999998877666 5788999999
Q ss_pred HHHHHHHHhhh
Q 015160 221 YYMMICSSFIL 231 (412)
Q Consensus 221 ~~ML~~s~fil 231 (412)
..|+.+-+-.+
T Consensus 139 ~~~ve~l~~~l 149 (251)
T PF07091_consen 139 SQLVEFLNAFL 149 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987655444
No 282
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=86.13 E-value=2.2 Score=42.75 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=29.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (412)
++.+||+.||| .|.++..+|+. |.. |.++|-+..-+..+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 57799999875 36677777775 885 99999988766443
No 283
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=86.09 E-value=2.9 Score=41.01 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|..+..||+. |+.|.++.-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56689998887 48888888877 999999988877653
No 284
>PTZ00357 methyltransferase; Provisional
Probab=86.00 E-value=3.1 Score=46.83 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=61.4
Q ss_pred CeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCcccccc
Q 015160 191 PACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~i 264 (412)
..|+|+|+|.|-|+-..-+ .| ++|.++|=....++ +++.+-.....|. + ..
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-------- 758 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-------- 758 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc--------
Confidence 5689999999999654422 23 57889999844221 1111100111221 0 00
Q ss_pred CCCCCCCCCCCCceeEEecccccccCC--------CCCCCCccEEEEec---ccCChhhHHHHHHHHHHhccC----CcE
Q 015160 265 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD----GGV 329 (412)
Q Consensus 265 PDv~p~~~~~~~~~s~~~GDF~ely~~--------~~~~~~fD~VvT~F---FIDta~Ni~~yl~~I~~~LKP----GG~ 329 (412)
...+..+.++..||+++... |...+++|+||+-. |=|..- =.+.|.-+.+.||+ +|+
T Consensus 759 -------~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNEL-SPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 759 -------YTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNEL-SPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred -------ccCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccC-CHHHHHHHHHhhhhhcccccc
Confidence 01123478899999998431 11224799999864 544321 12777777888876 665
No 285
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=86.00 E-value=3.8 Score=39.91 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|+.+..+|+. |+.|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 89998888777 999999999988764
No 286
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.98 E-value=2.4 Score=42.08 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-+..++
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 56789998876 66777777766 88 4889999887664433
No 287
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.91 E-value=1.7 Score=40.95 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=47.3
Q ss_pred CCCccEEEE--ecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 295 VGAWDAVVT--CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 295 ~~~fD~VvT--~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
..+||.|++ |.|+|..+ ...+++|..+|+|.|.-+-+.|- -.=|.+.....+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~h--~sLvdtIk~lL~p~g~Al~fsPR---------------Rg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHH--ESLVDTIKSLLRPSGRALLFSPR---------------RGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHHH--HHHHHHHHHHhCcccceeEecCc---------------ccchHHHHHHHHHhceeEEEe
Confidence 468999985 56777653 57899999999999996644431 124677788888899999887
Q ss_pred Ee
Q 015160 373 EK 374 (412)
Q Consensus 373 e~ 374 (412)
++
T Consensus 164 ~e 165 (201)
T KOG3201|consen 164 EE 165 (201)
T ss_pred cc
Confidence 54
No 288
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=84.84 E-value=3.4 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.175 Sum_probs=26.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML 224 (412)
++.+||+.||| .|.++..+|+. |.. |.+.|.....+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl 182 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRR 182 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 34579999875 57778878764 887 55678777655
No 289
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=84.71 E-value=2.9 Score=41.28 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+-|+ |.|.++..+|+. |..|.+..-|..-.
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~ 189 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKV 189 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 6789999996 789999888876 99999988877654
No 290
>PLN02494 adenosylhomocysteinase
Probab=84.70 E-value=3 Score=44.84 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHH-HHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGL-GRLALE-ISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~e-LA~~Gf~V~GnD~S~~M 223 (412)
.+.+|++.|+|. |+.+.. +...|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 567999999983 333222 23348899999988743
No 291
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.62 E-value=4 Score=43.01 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=26.4
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eL-A~~Gf~V~GnD~S~~ML 224 (412)
.+.+|++.|+|. |+.+..+ ...|..|.++|.++.-.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 567999999996 5554433 44488999999888543
No 292
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.31 E-value=2 Score=41.61 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.| -|+|.++..+|+. |..|.+..-|..-+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~ 181 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV 181 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 567999998 4789999888876 88999988877654
No 293
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=84.23 E-value=2.5 Score=38.83 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML 224 (412)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+..--
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5779999976 5666666655 89999999988653
No 294
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=83.75 E-value=2.9 Score=41.07 Aligned_cols=34 Identities=32% Similarity=0.228 Sum_probs=28.6
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHH
Q 015160 191 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMM 224 (412)
Q Consensus 191 ~rVLvPGC--GlGRLa~eLA~~-Gf-~V~GnD~S~~ML 224 (412)
.+||+-|+ |+|..+..+|+. |. .|.+++-|..-+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~ 193 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC 193 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 79999986 799999988876 98 799998887654
No 295
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=83.56 E-value=6.8 Score=37.11 Aligned_cols=37 Identities=24% Similarity=0.172 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+|. |..+..+|+. |.. |.+++-+...+.
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~ 136 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE 136 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence 667899998875 7777777775 888 999998887764
No 296
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=83.10 E-value=4.4 Score=41.26 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=26.8
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~~ 222 (412)
.+.+|.++|+|. |+ +|..|+..|+.|.+.|.+..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~ 180 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPN 180 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChh
Confidence 456899999987 54 56777788999999998763
No 297
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=83.06 E-value=5.7 Score=39.55 Aligned_cols=39 Identities=15% Similarity=-0.070 Sum_probs=33.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s 227 (412)
++.+|||..+|-|.=+..||.+-. .++++|++..-+..-
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l 126 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRL 126 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHH
Confidence 567899999999999999988854 799999999887543
No 298
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.00 E-value=4.2 Score=44.18 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCC
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPD 266 (412)
++.+||++|+|. |..+..+++ +|..|.+.|.+..-+..++- +. ..+ +.++
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG-----a~~---------------------v~v~- 214 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG-----AEF---------------------LELD- 214 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC-----CeE---------------------Eecc-
Confidence 568999999986 455555554 49999999999976544331 10 000 0000
Q ss_pred CCCCCCCCCCc-eeEEeccccc--ccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 267 IHPASAGITEG-FSMCGGDFVE--VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 267 v~p~~~~~~~~-~s~~~GDF~e--ly~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
..... ....+ -...-.++.+ .+..+.+...+|+|+|+-.|...+...-..+.+-+.+|||++.|.+
T Consensus 215 ~~e~g-~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 215 FKEEG-GSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred ccccc-cccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 00000 00000 0111112221 0000112356999999988887655444577788999999999964
No 299
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=82.59 E-value=6.2 Score=38.40 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|..+..+|+. |+. |.+.+-|.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56789998876 47777777666 777 888888887754
No 300
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=82.29 E-value=1.3 Score=47.95 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=34.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+..+||.-||||-.+.-+|+.--.|.|+|+|+..+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 357899999999999999999889999999999876555
No 301
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=81.89 E-value=21 Score=35.07 Aligned_cols=145 Identities=13% Similarity=0.142 Sum_probs=80.4
Q ss_pred CeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 191 PACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
..|+.+|||+=.-++.|... |..+.=+|+-. ++..-+.++.....
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~--------------------------------- 128 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGA--------------------------------- 128 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCC---------------------------------
Confidence 36999999999999988543 44555555554 33222222211000
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCcc-----EEEE---ecccCChhhHHHHHHHHHHhccCCcEEEE--ecCcch-
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWD-----AVVT---CFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY- 338 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD-----~VvT---~FFIDta~Ni~~yl~~I~~~LKPGG~wIN--~GPLly- 338 (412)
....+..++..|+.+-....-....|| +++. .+||+.. .+...|+.|.+...||+.++- ++|+--
T Consensus 129 ---~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~ 204 (260)
T TIGR00027 129 ---EPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEE-AVDALLAFIAELSAPGSRLAFDYVRPLDGE 204 (260)
T ss_pred ---CCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHH-HHHHHHHHHHHhCCCCcEEEEEeccccchh
Confidence 011235666677652100000011233 2221 1467765 488999999999889988874 455311
Q ss_pred --h--hhhc----cC-CCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 339 --H--FADL----YG-QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 339 --h--~~~~----~g-~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
. .... .+ ......+.++.+|+..++...||+....
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 205 WRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 0 0000 00 0112345678999999999999998764
No 302
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=81.54 E-value=3.5 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhccCCcEEEEe
Q 015160 311 HNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 311 ~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.-|..||+....+|.|||.+|-+
T Consensus 202 k~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 202 KPIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred chHHHHHHHHHHhccCCCeEEEE
Confidence 34778999999999999999864
No 303
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=81.45 E-value=7.5 Score=39.37 Aligned_cols=99 Identities=21% Similarity=0.235 Sum_probs=59.3
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
++.+||+.| .|.|.++..||+. |+.+.+.--|..=...+. +.- ..+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~---~lG---Ad~v------------------------ 191 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK---ELG---ADHV------------------------ 191 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH---hcC---CCEE------------------------
Confidence 578999998 5789999999887 777777766664432111 100 0000
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
+.+...||.+--........||+|+ |+.- -+++....+.|++||.++.+|.+
T Consensus 192 ------------i~y~~~~~~~~v~~~t~g~gvDvv~-----D~vG--~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 192 ------------INYREEDFVEQVRELTGGKGVDVVL-----DTVG--GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred ------------EcCCcccHHHHHHHHcCCCCceEEE-----ECCC--HHHHHHHHHHhccCCEEEEEecC
Confidence 1222333333111001124699994 4432 26778889999999999987653
No 304
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=81.34 E-value=5.1 Score=39.44 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=25.3
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~-----g-~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV-----G-IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC-----C-CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987653 1 12357888899999999999874
No 305
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=81.22 E-value=2.7 Score=45.08 Aligned_cols=44 Identities=20% Similarity=0.129 Sum_probs=39.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~filn 232 (412)
...-|||+|.|||-|+..-++.|. .|+++|.=-.|.-+|+.|..
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~ 110 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMH 110 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHh
Confidence 456789999999999999999987 49999999999999998864
No 306
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=81.17 E-value=6.9 Score=42.19 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+|++.|+|. ||. |..+...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999985 444 22333458899999887643
No 307
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=81.05 E-value=6.4 Score=38.66 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+|. |..+..+|+. |.. |.++.-+..+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~ 198 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567899988765 7777777765 887 989988876653
No 308
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=80.86 E-value=13 Score=36.45 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.1
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 689999997 467899999999999999987554
No 309
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.78 E-value=9.4 Score=37.69 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+-|+|. |.++..+|+. |.. |.+.+-+.....
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 567899987765 8888888876 887 888888876653
No 310
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=80.58 E-value=5.1 Score=40.79 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=54.2
Q ss_pred HHHHHhcCcccChhHH--hhch---HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015160 152 IRNIVRDWAAEGKTER--DQCY---KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (412)
Q Consensus 152 L~q~~RDWS~eG~~ER--~~~y---~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (412)
+.|+-..|..|-..|- +-++ ..|.+++++++++.. ....-+..-.-|.|.+.-+|++.||+|.|.|++..|..+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~-~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG-LAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhc-CCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 3456667876544443 1122 236677777777552 345567888999999999999999999999999999764
Q ss_pred HH
Q 015160 227 SS 228 (412)
Q Consensus 227 s~ 228 (412)
-+
T Consensus 288 r~ 289 (359)
T KOG2872|consen 288 RR 289 (359)
T ss_pred HH
Confidence 33
No 311
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=80.47 E-value=1.2 Score=37.53 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCc
Q 015160 199 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277 (412)
Q Consensus 199 GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~ 277 (412)
|.|.++..+|+. |..|.++|-+..=+..++-+- + .. ++.. +.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~G--a----~~----~~~~-----~~---------------------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELG--A----DH----VIDY-----SD---------------------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--E----SE----EEET-----TT----------------------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhc--c----cc----cccc-----cc----------------------
Confidence 578888888876 999999999997665443110 0 00 0000 00
Q ss_pred eeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
.. ....+.++.. ...+|+|+.| .. ....++...++|+|||.++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0111223322 2579999654 32 24789999999999999998664
No 312
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=80.17 E-value=5 Score=40.45 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=29.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 56789999875 36667777764 88 5999999987765443
No 313
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=80.10 E-value=22 Score=35.34 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=27.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~ 36 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAV 36 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 588889886 457888899999999999998764
No 314
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=79.96 E-value=6.3 Score=38.59 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=30.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA 177 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5679999984 689999988876 889999888876543
No 315
>PRK13699 putative methylase; Provisional
Probab=79.73 E-value=6 Score=38.13 Aligned_cols=40 Identities=20% Similarity=0.088 Sum_probs=36.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
++..||||=||.|..+..-.+.|....|+|++.....++.
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 5678999999999999999999999999999998876654
No 316
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.58 E-value=2.6 Score=45.50 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=48.9
Q ss_pred ccccccCCCCCCCCccEEEEec----ccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHH
Q 015160 284 DFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDV 359 (412)
Q Consensus 284 DF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL 359 (412)
|..|-+. ....+||+|-+.. +.+. -++...+-+|-|+|+|||..|- .|. .--.+++
T Consensus 416 DWCE~fs--TYPRTYDLlHA~~lfs~~~~r-C~~~~illEmDRILRP~G~~ii--------RD~---------~~vl~~v 475 (506)
T PF03141_consen 416 DWCEAFS--TYPRTYDLLHADGLFSLYKDR-CEMEDILLEMDRILRPGGWVII--------RDT---------VDVLEKV 475 (506)
T ss_pred chhhccC--CCCcchhheehhhhhhhhccc-ccHHHHHHHhHhhcCCCceEEE--------ecc---------HHHHHHH
Confidence 4444332 3458899987653 2333 4588899999999999999983 110 1236789
Q ss_pred HHHHHhCCCEEEEEe
Q 015160 360 KRVALHYGFEFEKEK 374 (412)
Q Consensus 360 ~~ll~~~GFeii~e~ 374 (412)
+.+++++.++.....
T Consensus 476 ~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 476 KKIAKSLRWEVRIHD 490 (506)
T ss_pred HHHHHhCcceEEEEe
Confidence 999999999876644
No 317
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.43 E-value=3.8 Score=37.94 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=33.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCC-C-Ch-hHHHHHHcCCeEEEEeCCH
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAG-L-GR-LALEISHLGFISQGNEFSY 221 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCG-l-GR-La~eLA~~Gf~V~GnD~S~ 221 (412)
+++.+++.+.+. .+.+||++|+| + |. ++..|.++|..|+..+-+.
T Consensus 31 ~v~l~~~~~~~l---~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDL---AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCC---CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 445566555433 67899999999 3 88 7888899999887666554
No 318
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=79.38 E-value=4.5 Score=40.07 Aligned_cols=38 Identities=24% Similarity=0.051 Sum_probs=27.5
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGA-GLGRLALEISHL-GF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (412)
++.+||+.|+ ++|.++..+|+. |+ .|.+.+-+...+..
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~ 212 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARREL 212 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 5678898876 356666666665 88 78899888877643
No 319
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=79.38 E-value=8.5 Score=37.26 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s 227 (412)
.+.+|||.|+|.|--+..-|+.|. .|.+.|+.+....+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai 118 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAI 118 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHh
Confidence 578999999999999999999996 477888887655433
No 320
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=79.22 E-value=7.6 Score=41.24 Aligned_cols=36 Identities=19% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCCeEEEecCCC-ChhH-HHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGL-GRLA-LEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa-~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+|++.|+|. |+.+ ..+...|.+|...|.+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 567999999974 3332 23345589999999988554
No 321
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.04 E-value=11 Score=39.38 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=28.9
Q ss_pred CeEEEecCCCCh--hHHHHHHcCCeEEEEeCCHHHHH
Q 015160 191 PACLVPGAGLGR--LALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 191 ~rVLvPGCGlGR--La~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
.+|-++|.|.-. +|..|+++||.|+|.|.+..-+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 479999999654 47778999999999999987654
No 322
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=78.28 E-value=5.5 Score=38.50 Aligned_cols=39 Identities=26% Similarity=0.128 Sum_probs=28.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| +|.++..+|+. |.. |.++|.+..-+..+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 56689999874 56666767655 886 88999888765433
No 323
>PLN02712 arogenate dehydrogenase
Probab=77.74 E-value=12 Score=41.99 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=28.3
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ 222 (412)
+..+|.++|+|. |.++..|.+.|+.|.+.|-+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 456899999987 6678888889999999998754
No 324
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=77.71 E-value=3.9 Score=41.32 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGR-LALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf~V~GnD~S~ 221 (412)
.+.+|.++|.| .|+ +|..|...|+.|.+.|.+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 45789999988 475 4666677799999988653
No 325
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=77.52 E-value=8 Score=34.83 Aligned_cols=60 Identities=13% Similarity=0.169 Sum_probs=38.8
Q ss_pred CccEEEEecccCChhhHHHHHHH--HHHhccCCcEEEEecCcchhhhhccCCCCCcccCCCHHHHHHHHHhCCCEEEEE
Q 015160 297 AWDAVVTCFFIDTAHNIVEYIEI--ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (412)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yl~~--I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ieLS~EEL~~ll~~~GFeii~e 373 (412)
.-|+|++|.. ....+.+.+.. +...|++|-++|+.+.... -+..++.+.+.+.|...+.-
T Consensus 57 ~~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p---------------~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 57 QADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIIDMSTISP---------------ETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HBSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H---------------HHHHHHHHHHHHTTEEEEEE
T ss_pred cccceEeecc--cchhhhhhhhhhHHhhccccceEEEecCCcch---------------hhhhhhhhhhhhccceeeee
Confidence 3488888644 33446777888 9999999999998543211 13456677777889887764
No 326
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=77.51 E-value=5.9 Score=41.27 Aligned_cols=98 Identities=18% Similarity=0.153 Sum_probs=60.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhh--hhcccccccccccccccccCCCCCcccCccccc
Q 015160 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFI--LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fi--ln~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~ 263 (412)
.+.+|||+=+|+|-=+...|+. | -.|+.||+|...+...+.- +|.. .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~----------------------------~ 100 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL----------------------------E 100 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-----------------------------S
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc----------------------------c
Confidence 3468999999999777777666 3 4799999999976543321 1110 0
Q ss_pred cCCCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 264 iPDv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+.+....+|...+.. ...+.||+| =||.---...||+...+.+|.||++.
T Consensus 101 -----------~~~~~v~~~DAn~ll~--~~~~~fD~I----DlDPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 101 -----------DERIEVSNMDANVLLY--SRQERFDVI----DLDPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp -----------GCCEEEEES-HHHHHC--HSTT-EEEE----EE--SS--HHHHHHHHHHEEEEEEEE
T ss_pred -----------CceEEEehhhHHHHhh--hccccCCEE----EeCCCCCccHhHHHHHHHhhcCCEEE
Confidence 0125666777766542 125789988 35554456689999999999999996
No 327
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.46 E-value=10 Score=37.39 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=26.0
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
+.+|+|+.+..- ...+..+.++|+++|.+|.+|..
T Consensus 229 ~~~d~vld~~g~------~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 229 EGVDVFLEMSGA------PKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhcCCCEEEEEccC
Confidence 458999776321 14577889999999999998753
No 328
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=77.32 E-value=5.4 Score=39.96 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=27.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+-|+| +|.++..+|+. |.. |.+++-|.....
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~ 226 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLA 226 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 55688888775 77887777765 887 888887776653
No 329
>PRK11524 putative methyltransferase; Provisional
Probab=77.29 E-value=12 Score=36.97 Aligned_cols=55 Identities=16% Similarity=-0.011 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn 232 (412)
+++.|-+.+. .++..||||=||.|..+..-.++|-...|+|++.+-...|..-++
T Consensus 197 L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 197 LLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 5555555443 257799999999999999999999999999999988876664443
No 330
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.27 E-value=8.8 Score=37.75 Aligned_cols=37 Identities=32% Similarity=0.291 Sum_probs=26.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+.|+| .|.++..+|+ +|.. |.+++-+..-+.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~ 202 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE 202 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 56799999874 4555666665 4888 999998876654
No 331
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=77.15 E-value=2.3 Score=42.80 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHH
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMM 224 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML 224 (412)
|---+++.|.+.+...-.-.+.+||++|||.|-......+.| ..|...|+|..-|
T Consensus 97 cS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 97 CSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 333456666644311111257899999999999999999999 6888999998665
No 332
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=76.88 E-value=2.7 Score=39.46 Aligned_cols=53 Identities=23% Similarity=0.382 Sum_probs=33.0
Q ss_pred EEecccccccCCCCCCCCccEEEEec---------c---cCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 280 MCGGDFVEVYSDPSQVGAWDAVVTCF---------F---IDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 280 ~~~GDF~ely~~~~~~~~fD~VvT~F---------F---IDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+...||..-+. ...++||.+++.. | ||..-++ +-+..|.++|||||.+.-.-|
T Consensus 48 i~p~df~~~~~--~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 48 ILPVDFAKNWQ--KYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred ccHHHHHHHHH--HhhccchhhheechhccccccccCCCCCccccH-HHHHHHHHhhccCCeEEEEee
Confidence 33445553222 1247899887764 3 4444443 557888899999999975333
No 333
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=76.51 E-value=84 Score=31.19 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 189 SPPACLVPGAG-LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
.+.+||++|=+ +-.+|..|....-+|+.+|+..-+|.. |-..+.+ . ++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~f---I~~~a~~-~----------------------gl----- 92 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDF---INRVAEE-E----------------------GL----- 92 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHH---HHHHHHH-H----------------------T------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHH---HHHHHHH-c----------------------CC-----
Confidence 46799999955 334566666667799999999999853 3222211 1 11
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.+.....|+++-.. +.-.++||+++|-= -.|.+-+.-++.+-...||.-|-.+-+ .|... +
T Consensus 93 ---------~i~~~~~DlR~~LP-~~~~~~fD~f~TDP-PyT~~G~~LFlsRgi~~Lk~~g~~gy~-----~~~~~---~ 153 (243)
T PF01861_consen 93 ---------PIEAVHYDLRDPLP-EELRGKFDVFFTDP-PYTPEGLKLFLSRGIEALKGEGCAGYF-----GFTHK---E 153 (243)
T ss_dssp ----------EEEE---TTS----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEE-----EE-TT---T
T ss_pred ---------ceEEEEecccccCC-HHHhcCCCEEEeCC-CCCHHHHHHHHHHHHHHhCCCCceEEE-----EEecC---c
Confidence 15667788887432 34568999887620 115566778899999999986643221 22111 0
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEE
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEK 372 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~ 372 (412)
+ + .--+-++.+.+...||.|..
T Consensus 154 ~--s-~~~~~~~Q~~l~~~gl~i~d 175 (243)
T PF01861_consen 154 A--S-PDKWLEVQRFLLEMGLVITD 175 (243)
T ss_dssp -----HHHHHHHHHHHHTS--EEEE
T ss_pred C--c-HHHHHHHHHHHHHCCcCHHH
Confidence 0 1 01234778888899999877
No 334
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=76.28 E-value=9.1 Score=39.20 Aligned_cols=145 Identities=16% Similarity=0.195 Sum_probs=80.4
Q ss_pred HhhchHHHHHHHHhhCCCCC----------CCCCCeEEEecCCCChhHHHHHHcC----------------------CeE
Q 015160 167 RDQCYKPILEELDALFPNRS----------KESPPACLVPGAGLGRLALEISHLG----------------------FIS 214 (412)
Q Consensus 167 R~~~y~pIl~~L~~~~p~~~----------~~~~~rVLvPGCGlGRLa~eLA~~G----------------------f~V 214 (412)
|-.||.-|+..|.+++.... .++..+||.+|-|.|.-...||..= ..+
T Consensus 54 RAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~i 133 (315)
T PF11312_consen 54 RALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSI 133 (315)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceE
Confidence 66799999988887663211 1234799999999987655554321 467
Q ss_pred EEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC--
Q 015160 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-- 292 (412)
Q Consensus 215 ~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~-- 292 (412)
+.+|+..---.+.+ |+.+ ++-.|-+.++.+. ...|.+.+ ..-++.|.++|.+.+....
T Consensus 134 tlvDiAdWs~VV~~--L~~~-----i~s~p~~sk~a~~---------~~~~~~~~----~~~~~~F~~~DvL~~~~~~l~ 193 (315)
T PF11312_consen 134 TLVDIADWSSVVDR--LTTT-----ITSPPPLSKYASA---------ANWPLIEP----DRFNVSFTQQDVLSLSEDDLK 193 (315)
T ss_pred EEEEecChHHHHHH--HHHh-----ccCCCCccccccc---------cccccCCc----cceeeeEEecccccCChHHHH
Confidence 88888654443333 2211 1112222222110 11111111 1224889999988764310
Q ss_pred C--CCCCccEEEEecc------cCChhhHHHHHHHHHHhccCCcEEEE
Q 015160 293 S--QVGAWDAVVTCFF------IDTAHNIVEYIEIISRILKDGGVWIN 332 (412)
Q Consensus 293 ~--~~~~fD~VvT~FF------IDta~Ni~~yl~~I~~~LKPGG~wIN 332 (412)
. ....-++| |.+| -.-...-.++|..+...++||-+++-
T Consensus 194 ~ll~~~~~~LI-TLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 194 SLLGPPSPDLI-TLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred HHhccchhHHH-HHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0 00123444 5544 22233345789999999999999874
No 335
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=76.03 E-value=1.7 Score=42.23 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn 232 (412)
+...+.|+|||-|.|..+|+.+-- -+.|.|+=. -++.|+-.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~---KVsdYVk~ 102 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD---KVSDYVKE 102 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhH---HHHHHHHH
Confidence 456799999999999999999854 367888753 34555543
No 336
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=76.01 E-value=11 Score=38.43 Aligned_cols=40 Identities=10% Similarity=-0.175 Sum_probs=30.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (412)
++..+||-=-|.|.++..|.++ +-.+.|+|-...++..|.
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK 61 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence 5668999999999999999876 568999999999996554
No 337
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=75.36 E-value=9.1 Score=40.46 Aligned_cols=41 Identities=22% Similarity=0.124 Sum_probs=33.7
Q ss_pred CCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhh
Q 015160 190 PPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFI 230 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fi 230 (412)
-..|.|+|+|-|+|+..|+-. |..|.|+|-|--.-..|+.+
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 457999999999999999754 88999999997666666544
No 338
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.26 E-value=1.4 Score=41.18 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=31.9
Q ss_pred CCCCCccEEEEecccC--ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 293 SQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 293 ~~~~~fD~VvT~FFID--ta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.+++.|+|.+-.++. |...-..+++..++.|||||++-..-|
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3468899988765544 234466889999999999999965444
No 339
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=74.50 E-value=8.9 Score=37.54 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+-|+| .|.++..+|++ |.. |.++.-|.....
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~ 204 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLE 204 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56789998876 77777777776 888 888877776653
No 340
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.46 E-value=3.5 Score=43.90 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEe
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNE 218 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD 218 (412)
...|.|+|+|.|.| |..||++|++|+-+|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEE
Confidence 35799999999999 678899999999998
No 341
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=73.61 E-value=5.3 Score=37.98 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=39.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fil 231 (412)
++.+|.+.+|.. ...+++||=||.|..++.+...|..|..||+...-..+.+.++
T Consensus 8 l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 8 LAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 667788888742 4569999999999999999889999999999998887777344
No 342
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=72.92 E-value=16 Score=36.27 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (412)
++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 200 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLAL 200 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHH
Confidence 56799999875 45666666664 886 7889888876643
No 343
>PRK06436 glycerate dehydrogenase; Provisional
Probab=72.72 E-value=7.5 Score=39.20 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=23.8
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S 220 (412)
.+.+|.++|.|. |+- |..+...|+.|.+.|-+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 567999999984 764 44444559999999876
No 344
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=72.59 E-value=12 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=27.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (412)
++.+||+-|+| +|..+..+|+. |+. |.+++-+.....
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~ 221 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE 221 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 56789988875 67777777665 886 888887776653
No 345
>PRK12939 short chain dehydrogenase; Provisional
Probab=72.35 E-value=31 Score=31.88 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=25.4
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ |+|+. +..|+++|+.|.+.+-+..-+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEA 44 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3568999996 44443 455677899999998776554
No 346
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=72.34 E-value=16 Score=36.21 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=27.4
Q ss_pred CeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHH
Q 015160 191 PACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMM 224 (412)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML 224 (412)
.+|.++|+|. +.++..|++.|+ .|.+.|.+..-+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~ 44 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETR 44 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHH
Confidence 5799999987 456777888885 899999998654
No 347
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=71.81 E-value=3.6 Score=39.72 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=24.4
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.|+++|+|.+.+ |..|+++|++|+-+|-+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcc
Confidence 699999999988 677899999999998754
No 348
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=71.81 E-value=15 Score=35.37 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=28.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ ++|+++..+|+. |..+....-|.....
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 179 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVD 179 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5678999874 689998888765 888777777777654
No 349
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=71.58 E-value=17 Score=35.88 Aligned_cols=37 Identities=24% Similarity=0.146 Sum_probs=27.4
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA-GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|| ++|..+..+|+. |..|.+++-+...+.
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~ 207 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKE 207 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHH
Confidence 5678998877 456666666654 899999988877654
No 350
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=71.38 E-value=21 Score=34.61 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=27.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| +|..+..+|+. |..|.+++-+...+..+
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~ 195 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALA 195 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 56789998753 45555555544 99999999888776443
No 351
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=71.30 E-value=23 Score=33.63 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=23.5
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEEeC
Q 015160 189 SPPACLVPGAGLG--RLALEISHLGFISQGNEF 219 (412)
Q Consensus 189 ~~~rVLvPGCGlG--RLa~eLA~~Gf~V~GnD~ 219 (412)
.+.+||++|.|.= |-+..|.+.|..|+-++-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4569999999953 446778888998887744
No 352
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=71.28 E-value=19 Score=34.67 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=71.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhccccccccccc
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~------Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~ 243 (412)
.|+.++-++ ++..|++.|.=-|.=+..+|.. .-.|.|+|+...-. |. + .+.-|
T Consensus 23 ~~qeli~~~----------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-------~~--~--a~e~h 81 (206)
T PF04989_consen 23 AYQELIWEL----------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-------NR--K--AIESH 81 (206)
T ss_dssp HHHHHHHHH------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---------S-----GGGG-
T ss_pred HHHHHHHHh----------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-------ch--H--HHhhc
Confidence 455555555 3468999999998877766642 35899999864221 11 0 01111
Q ss_pred ccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCC-C--CC--CCCccEEEEecccCCh---hhHHH
Q 015160 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-P--SQ--VGAWDAVVTCFFIDTA---HNIVE 315 (412)
Q Consensus 244 P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~-~--~~--~~~fD~VvT~FFIDta---~Ni~~ 315 (412)
| ...+++|++||-.+.... + .. ...-.+| .+|-. .++..
T Consensus 82 p-----------------------------~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlV----ilDs~H~~~hvl~ 128 (206)
T PF04989_consen 82 P-----------------------------MSPRITFIQGDSIDPEIVDQVRELASPPHPVLV----ILDSSHTHEHVLA 128 (206)
T ss_dssp --------------------------------TTEEEEES-SSSTHHHHTSGSS----SSEEE----EESS----SSHHH
T ss_pred c-----------------------------ccCceEEEECCCCCHHHHHHHHHhhccCCceEE----EECCCccHHHHHH
Confidence 1 124588999987653210 0 00 1111222 24543 78999
Q ss_pred HHHHHHHhccCCcEEEEecCcchhhhhc-cCCCCCcccC---CCHHHHHHHHHhCC-CEEEE
Q 015160 316 YIEIISRILKDGGVWINLGPLLYHFADL-YGQEDEMSIE---LSLEDVKRVALHYG-FEFEK 372 (412)
Q Consensus 316 yl~~I~~~LKPGG~wIN~GPLlyh~~~~-~g~~~~~~ie---LS~EEL~~ll~~~G-Feii~ 372 (412)
-|+....+|+||+++|-.--...++... .... .+. -..+.+++.+.+.. |++..
T Consensus 129 eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~---~w~~g~~p~~av~~fL~~~~~f~iD~ 187 (206)
T PF04989_consen 129 ELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDR---PWGPGNNPKTAVKEFLAEHPDFEIDT 187 (206)
T ss_dssp HHHHHHHT--TT-EEEETSHHHHHHHHS----------------HHHHHHHHHTTTTEEEET
T ss_pred HHHHhCccCCCCCEEEEEecccccccccccccc---chhhhhHHHHHHHHHHHHCCCcEecc
Confidence 9999999999999999532222222221 0111 122 25788888888544 76654
No 353
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.21 E-value=55 Score=32.41 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=27.2
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. ..++..|++.|+.|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~ 36 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAV 36 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 688898885 447888899999999999998554
No 354
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=70.96 E-value=31 Score=33.79 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~ 221 (412)
++.+||+.|+ ++|..+..+|+. |..|.++.-+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence 5679999997 678887777665 88888887543
No 355
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=70.96 E-value=12 Score=33.99 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhccCCcEEE-EecCcchhhhhccCCCCCcccCCCHHHHHH-HHHhCC-CEEEEEe-ec-cccCCCCcccc
Q 015160 313 IVEYIEIISRILKDGGVWI-NLGPLLYHFADLYGQEDEMSIELSLEDVKR-VALHYG-FEFEKEK-TI-ETTYTTNPRSM 387 (412)
Q Consensus 313 i~~yl~~I~~~LKPGG~wI-N~GPLlyh~~~~~g~~~~~~ieLS~EEL~~-ll~~~G-Feii~e~-~i-~s~Y~~d~~sm 387 (412)
+.+++..++++|||||.++ +++....+ . .+.. +.+..| |.+..+- +. ...........
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~---------------~--~~~~~~~~~~g~~~~~~~iiW~K~~~~~~~~~~~ 97 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDDREIA---------------G--FLFELALEIFGGFFLRNEIIWNKPNGMPKSNKKR 97 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-CCEEC---------------T--HHHHHHHHHHTT-EEEEEEEEE-SSSTTSSTCCS
T ss_pred HHHHHHHHHhhcCCCeeEEEEecchhhh---------------H--HHHHHHHHHhhhhheeccceeEecCccccccccc
Confidence 5577899999999999975 44432211 0 2333 344457 8887643 22 22333333224
Q ss_pred cccccceEEEEEEEc
Q 015160 388 MQNRYFTAFWTMRKK 402 (412)
Q Consensus 388 ~~~~Y~~~f~VarK~ 402 (412)
....+..++|.++.+
T Consensus 98 ~~~~~E~il~~~K~~ 112 (231)
T PF01555_consen 98 FSNSHEYILVFSKDK 112 (231)
T ss_dssp -B--EEEEEEEESST
T ss_pred cccchhhhhcccccc
Confidence 555666666555443
No 356
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=70.92 E-value=11 Score=37.82 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCH
Q 015160 188 ESPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSY 221 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~ 221 (412)
.++.+||-+|++.|+.+-.++.- |- -|.++|||.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 37889999999999998777765 32 588999986
No 357
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.83 E-value=7.8 Score=39.39 Aligned_cols=51 Identities=29% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHHHHhhCCCCCC-CCCCeEEEec--CCCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015160 174 ILEELDALFPNRSK-ESPPACLVPG--AGLGRL-ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 174 Il~~L~~~~p~~~~-~~~~rVLvPG--CGlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (412)
++..+...+|.... -.+..||.=| .|+||+ |.|+|++|..+.-.|+...-.
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~ 75 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGN 75 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccch
Confidence 44445555553221 2577888875 567887 999999999888888876554
No 358
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=70.69 E-value=25 Score=36.35 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=45.6
Q ss_pred CcchHHHHHHHHHHHhcCccc-C--hhHHhhchHHHHHHHHh-----hCCCCCCCCCCeEEEec-CCC--ChhHHHHHHc
Q 015160 142 LADVDKVRCIIRNIVRDWAAE-G--KTERDQCYKPILEELDA-----LFPNRSKESPPACLVPG-AGL--GRLALEISHL 210 (412)
Q Consensus 142 ~~d~~kv~s~L~q~~RDWS~e-G--~~ER~~~y~pIl~~L~~-----~~p~~~~~~~~rVLvPG-CGl--GRLa~eLA~~ 210 (412)
-.|-++....|..+ |.|+.+ | ...=+..|..|++.-.+ .+... .....+|.++| .|+ |.++..|.+.
T Consensus 44 v~d~~Re~~vl~~~-~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~-~~~~~~I~IiGG~GlmG~slA~~l~~~ 121 (374)
T PRK11199 44 IYVPEREAAMLASR-RAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTL-NPDLRPVVIVGGKGQLGRLFAKMLTLS 121 (374)
T ss_pred CCChHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhccccc-CcccceEEEEcCCChhhHHHHHHHHHC
Confidence 45556666666555 345542 2 12224456666644332 11111 11346899998 676 6677888888
Q ss_pred CCeEEEEeCCH
Q 015160 211 GFISQGNEFSY 221 (412)
Q Consensus 211 Gf~V~GnD~S~ 221 (412)
|+.|++.|.+.
T Consensus 122 G~~V~~~d~~~ 132 (374)
T PRK11199 122 GYQVRILEQDD 132 (374)
T ss_pred CCeEEEeCCCc
Confidence 99999999753
No 359
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=70.64 E-value=17 Score=36.72 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=25.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~M 223 (412)
++.+||+.|+| .|.++..+|+. |..|.+++.+..-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 56789998875 56667777665 8888888877543
No 360
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=70.42 E-value=16 Score=36.76 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (412)
++.+||+-|+|. |.++..+|+. |. .+.+.+.+...+..++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 567899888753 7777777765 88 5999999987765433
No 361
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=70.28 E-value=5.1 Score=41.00 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.5
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (412)
...+||++||| +|. ++..||+.|. .++-+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999 555 4778899998 788899886
No 362
>PRK10083 putative oxidoreductase; Provisional
Probab=70.25 E-value=23 Score=34.67 Aligned_cols=38 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCCeEEEecCC-CChhHHHHHH-c-CCe-EEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-L-GFI-SQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~-Gf~-V~GnD~S~~ML~~ 226 (412)
++.+||+.|+| +|.++..+|+ . |.. +.+++-+..-+..
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~ 201 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLAL 201 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHH
Confidence 56799999864 4566677777 3 985 7788888766543
No 363
>PRK13243 glyoxylate reductase; Reviewed
Probab=69.85 E-value=11 Score=38.31 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=24.7
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~ 221 (412)
.+.+|.++|.|. |+ +|..|...|+.|.+.|-+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 567999999976 54 4555566688999998764
No 364
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=69.41 E-value=4.4 Score=42.65 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=26.8
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.+|+++|+|.|.| |..||++|++|+-+|-..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3699999999999 677899999999998653
No 365
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.30 E-value=21 Score=34.02 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ ++|.++..+|+. |+.|.++.-+..-.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~ 180 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERA 180 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5679999885 789998888876 89999888877554
No 366
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=69.25 E-value=29 Score=32.58 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ ++|..+..+|+. |+.|.+.+-+.....
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 175 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE 175 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5678999994 588888888765 999999988877653
No 367
>PLN02256 arogenate dehydrogenase
Probab=69.19 E-value=26 Score=35.31 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=26.8
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~ 221 (412)
...+|.++|+|. |.++..|.+.|+.|.+.|-+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 456899999885 447777778899999999886
No 368
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=68.80 E-value=60 Score=32.19 Aligned_cols=33 Identities=18% Similarity=0.186 Sum_probs=26.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|. +.++..|++.|+.|.+.|.+...+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~ 36 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAV 36 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence 577888775 456777888899999999988654
No 369
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=68.63 E-value=5.5 Score=37.48 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (412)
.+.+||+.||| +|. .+..|++.|. .++-+|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35689999998 566 4788899998 788888764
No 370
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=68.55 E-value=30 Score=33.04 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=28.1
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ |+|..+..+|+. |..|.+.+-+..-+
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~ 170 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARA 170 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 3678999987 688888777765 88998888777554
No 371
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=67.92 E-value=20 Score=37.37 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.3
Q ss_pred eEEEecCC-CC-hhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAG-LG-RLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCG-lG-RLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|-++|.| .| .+|..+| .||.|+|+|.+..-+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~ 36 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVA 36 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHH
Confidence 57788888 45 4566666 4999999999998764
No 372
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=67.86 E-value=18 Score=36.76 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=31.4
Q ss_pred CCeEEEecCCC-ChhHHHHHHc-C-CeEEEEeCCHHHHHHHHh
Q 015160 190 PPACLVPGAGL-GRLALEISHL-G-FISQGNEFSYYMMICSSF 229 (412)
Q Consensus 190 ~~rVLvPGCGl-GRLa~eLA~~-G-f~V~GnD~S~~ML~~s~f 229 (412)
+.+||+.|||. |-++..+|+. | ..|..+|.+..=|..|+.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 34899999996 7777777766 5 478899999999877653
No 373
>PRK07574 formate dehydrogenase; Provisional
Probab=67.49 E-value=15 Score=38.47 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=24.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~ 221 (412)
.+.+|.++|.|. |+. |..|...|+.|.+.|-+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 467899999884 654 455566689999988764
No 374
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=67.47 E-value=23 Score=39.16 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+..||+.|+ |+|+. +..|+++|+.|.++.-+..-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 4567899987 45543 556778899999988876543
No 375
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=67.35 E-value=21 Score=34.56 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=27.4
Q ss_pred CCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 190 PPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 190 ~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
+.+||+.|+ ++|.++..+|+. |..|...+-+..-+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~ 184 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAA 184 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 468999986 677777777774 99999888887654
No 376
>PRK07233 hypothetical protein; Provisional
Probab=67.31 E-value=4.6 Score=40.88 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.5
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+|+++|+|.+.| |+.|+++|++|+-+|-..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 589999999999 668999999998776553
No 377
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=67.18 E-value=50 Score=32.90 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=26.3
Q ss_pred CeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGL-G-RLALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~ 221 (412)
.+|.++|+|. | .+|..|++.|++|+++|-+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 3799999994 4 56899999999999999875
No 378
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=66.75 E-value=26 Score=34.88 Aligned_cols=37 Identities=27% Similarity=0.206 Sum_probs=26.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (412)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-..
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~ 216 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLE 216 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 56689988764 45556666655 88 8999988876543
No 379
>PRK08507 prephenate dehydrogenase; Validated
Probab=66.64 E-value=29 Score=33.81 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=26.8
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML 224 (412)
+|.++|+|. |.++..|++.|+ .|.+.|.+..-+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~ 38 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHL 38 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 688999887 668888888896 789999987654
No 380
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=66.54 E-value=6.9 Score=40.06 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=27.0
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (412)
...+||++||| +|. ++..||+.|. .++-+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34689999999 565 4788899998 799999875
No 381
>PRK08655 prephenate dehydrogenase; Provisional
Probab=66.29 E-value=22 Score=37.64 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=25.9
Q ss_pred eEEEec-CC-CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPG-AG-LGR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPG-CG-lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|+++| +| .|+ ++..|...|+.|++.+.+...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHH
Confidence 689997 56 454 6777888899999999887653
No 382
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=65.94 E-value=33 Score=32.67 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCC
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S 220 (412)
++.+||+.|+ ++|..+..+|+. |..|.+++-+
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~ 177 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST 177 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH
Confidence 5679999997 588888888775 8999888744
No 383
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=65.78 E-value=33 Score=31.15 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=58.2
Q ss_pred eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCCCCCCCCCceeEEecccccccCCC
Q 015160 213 ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP 292 (412)
Q Consensus 213 ~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p~~~~~~~~~s~~~GDF~ely~~~ 292 (412)
+|.|.|+=...|...+-.|....- .+++.++..+=..+...-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--------------------------------------~~~v~li~~sHe~l~~~i 42 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--------------------------------------EDRVTLILDSHENLDEYI 42 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---------------------------------------GSGEEEEES-GGGGGGT-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--------------------------------------CCcEEEEECCHHHHHhhC
Confidence 488999999998776655532210 112445544433332100
Q ss_pred CCCCCccEEEEec-cc--------CChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCCCCcccC-CCHHHHHHH
Q 015160 293 SQVGAWDAVVTCF-FI--------DTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRV 362 (412)
Q Consensus 293 ~~~~~fD~VvT~F-FI--------Dta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~~~~~ie-LS~EEL~~l 362 (412)
..+..|+|+-++ || ..++.-...|+.+.++|+|||+.+- +.|.- .+.+.-| -..++..+-
T Consensus 43 -~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~i---v~Y~G------H~gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 43 -PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITI---VVYPG------HPGGKEESEAVEEFLAS 112 (140)
T ss_dssp --S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEE---EE--S------TCHHHHHHHHHHHHHHT
T ss_pred -ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEE---EEeCC------CCCCHHHHHHHHHHHHh
Confidence 114788877654 43 2344466789999999999999985 34531 1111111 122333333
Q ss_pred HHhCCCEEEEEe
Q 015160 363 ALHYGFEFEKEK 374 (412)
Q Consensus 363 l~~~GFeii~e~ 374 (412)
+.+.-|.+.+-.
T Consensus 113 L~~~~~~V~~~~ 124 (140)
T PF06962_consen 113 LDQKEFNVLKYQ 124 (140)
T ss_dssp S-TTTEEEEEEE
T ss_pred CCcceEEEEEEE
Confidence 445678887755
No 384
>PLN02827 Alcohol dehydrogenase-like
Probab=65.53 E-value=23 Score=36.09 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=27.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| .|.++..+|+ +|. .|.++|.+..-+..+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a 234 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA 234 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 57799999874 4566666665 488 488999888765433
No 385
>PHA01634 hypothetical protein
Probab=65.35 E-value=9.6 Score=34.74 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (412)
.+.+|||+|++.|--|..++.+|. .|.++|-++.+.-.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~ 66 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKK 66 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHH
Confidence 567999999999999999999998 59999999988643
No 386
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=65.21 E-value=6.2 Score=46.16 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (412)
.+.+|+++|.|-+.| |+.|+++||.|+.+|-
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 678999999999887 8899999999999994
No 387
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=64.88 E-value=25 Score=35.26 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=28.9
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeE--EEEeCCHHHHHH
Q 015160 190 PPACLVPGAGL--GRLALEISHLGFIS--QGNEFSYYMMIC 226 (412)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf~V--~GnD~S~~ML~~ 226 (412)
..+|++.|.|+ |-++..|.++|+.| .|.|.+..-+..
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 35899999986 56689999999976 788888766543
No 388
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=64.34 E-value=37 Score=31.91 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~ 221 (412)
++.+||+.|+ ++|..+..+|+. |..|..+.-+.
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~ 179 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA 179 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch
Confidence 5679999986 577777766654 88988877665
No 389
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=64.11 E-value=25 Score=33.62 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=26.7
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ |.|..+..+++ .|+.|...+.+..-+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~ 204 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL 204 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4568998886 57887776655 589999888877554
No 390
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=63.04 E-value=27 Score=35.41 Aligned_cols=35 Identities=14% Similarity=0.026 Sum_probs=25.6
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
..+|+|+.+.- +....+..+.++|+++|.+|.+|.
T Consensus 274 ~gvDvvld~~g-----~~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAG-----APPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCC-----CcHHHHHHHHHHHHcCCEEEEECC
Confidence 35899976532 112457788899999999999874
No 391
>PRK08324 short chain dehydrogenase; Validated
Probab=63.00 E-value=70 Score=35.59 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=28.0
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+||+.|+ |.|+ ++..|+++|+.|..++.+..-+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~ 459 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA 459 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH
Confidence 4578999996 5555 3667788899999999987654
No 392
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=62.35 E-value=34 Score=33.63 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=26.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~ 225 (412)
++.+||+-|+|. |..+..+|+ +|. .|.+.+-|..-+.
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 202 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLE 202 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567888877754 777777776 488 5778877776553
No 393
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=62.23 E-value=20 Score=38.69 Aligned_cols=62 Identities=18% Similarity=-0.017 Sum_probs=39.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--C--CeEEEEeCCHHHHHHHHhhh
Q 015160 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--G--FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--G--f~V~GnD~S~~ML~~s~fil 231 (412)
.|.+++..++..--.........+++.|.|+|.-.+.+... + ..+.-+|-|-.|+..+.-.+
T Consensus 181 gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~l 246 (491)
T KOG2539|consen 181 GYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNL 246 (491)
T ss_pred chHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhh
Confidence 67777766554321122235667888999888665544433 2 45778999999997665433
No 394
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=61.82 E-value=22 Score=34.91 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.1
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA-GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ ++|.++..+|+. |..|.+..-|....
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~ 202 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKL 202 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 5678999987 456676777664 89999998887665
No 395
>PRK06475 salicylate hydroxylase; Provisional
Probab=61.52 E-value=7.2 Score=39.81 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=26.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.+|+++|+|.+.| |..|+++|++|+-+|-..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5899999999997 566688899999988543
No 396
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.52 E-value=25 Score=36.50 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=33.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHc--CC-eEEEEeCCHHHHHHHHh
Q 015160 188 ESPPACLVPGAGLGRLALEISHL--GF-ISQGNEFSYYMMICSSF 229 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~--Gf-~V~GnD~S~~ML~~s~f 229 (412)
..+.+||+.|||.=.|.--|+.+ |. +|...|++..-|..|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 36789999999986666666555 43 79999999999987774
No 397
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=61.44 E-value=26 Score=35.70 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=28.7
Q ss_pred CCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhh
Q 015160 190 PPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~filn 232 (412)
..++||+|+|..-.=-.|+. .|....|.|+...-|..|+-+++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 67999999999866333332 39999999999999988886654
No 398
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.38 E-value=36 Score=30.49 Aligned_cols=100 Identities=21% Similarity=0.181 Sum_probs=57.9
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCCCC
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv~p 269 (412)
+|.++|+|.+.. |..|+.+|++|+-...+...+.. ++.. +.. ...+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~----i~~~---~~n--------------------~~~~~~~~- 52 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEE----INET---RQN--------------------PKYLPGIK- 52 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHH----HHHH---TSE--------------------TTTSTTSB-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHH----HHHh---CCC--------------------CCCCCCcc-
Confidence 588999999876 67889999999999998855431 1111 100 11122211
Q ss_pred CCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 270 ~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.+.++.+. -|+.+.. ..-|+|+-+ -...-+.++++.+...|++|=.+|++
T Consensus 53 ----l~~~i~~t-~dl~~a~------~~ad~Iiia---vPs~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 53 ----LPENIKAT-TDLEEAL------EDADIIIIA---VPSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ----EETTEEEE-SSHHHHH------TT-SEEEE----S-GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ----cCcccccc-cCHHHHh------CcccEEEec---ccHHHHHHHHHHHhhccCCCCEEEEe
Confidence 11224332 3544432 234766532 12233678999999999999888873
No 399
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=61.38 E-value=56 Score=32.51 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~ 221 (412)
...+|+++|+|. |.+|..|++.|++|+.+.-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 346899999995 567999999999998777664
No 400
>PRK07236 hypothetical protein; Provisional
Probab=61.37 E-value=8 Score=39.19 Aligned_cols=33 Identities=36% Similarity=0.373 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
...+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 456899999999987 678899999999999764
No 401
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=61.35 E-value=38 Score=33.33 Aligned_cols=34 Identities=26% Similarity=0.122 Sum_probs=24.1
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.+|+|+.+-. . ...+..+.++|+++|.+|.+|.
T Consensus 230 ~~vd~vld~~g--~----~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 230 TGVDVVLEMSG--N----PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCCEEEECCC--C----HHHHHHHHHHhccCCEEEEEcc
Confidence 46898865432 1 1346777889999999998764
No 402
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=61.24 E-value=15 Score=39.45 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCcccChhHHhhchH--HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH---HHcC---CeEEEEe
Q 015160 147 KVRCIIRNIVRDWAAEGKTERDQCYK--PILEELDALFPNRSKESPPACLVPGAGLGRLALEI---SHLG---FISQGNE 218 (412)
Q Consensus 147 kv~s~L~q~~RDWS~eG~~ER~~~y~--pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL---A~~G---f~V~GnD 218 (412)
.+-.+-..+.|.|..+...+=-+-|- .+++.+.+.+... +..+|+||.||+|++-... .++- -..+|.|
T Consensus 145 ~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE 221 (489)
T COG0286 145 LFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPE---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQE 221 (489)
T ss_pred chhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCC---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEe
Confidence 33344445555555533332112221 2555555555322 4459999999999884443 3221 3478999
Q ss_pred CCHHHHHHHH
Q 015160 219 FSYYMMICSS 228 (412)
Q Consensus 219 ~S~~ML~~s~ 228 (412)
+...++..++
T Consensus 222 ~~~~t~~l~~ 231 (489)
T COG0286 222 INDTTYRLAK 231 (489)
T ss_pred CCHHHHHHHH
Confidence 9888876655
No 403
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=61.20 E-value=5.8 Score=41.78 Aligned_cols=29 Identities=31% Similarity=0.396 Sum_probs=24.9
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
|+++|+|.|.| |..||+.|++|+-+|-..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~ 31 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 68999999999 677899999999887544
No 404
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=61.16 E-value=69 Score=32.92 Aligned_cols=55 Identities=15% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhh
Q 015160 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFIL 231 (412)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fil 231 (412)
+++++-..+... +....||-==|.|.++..|-.++ -.++|+|-...+|..|+-++
T Consensus 11 Ll~E~i~~L~~~---~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l 68 (314)
T COG0275 11 LLNEVVELLAPK---PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERL 68 (314)
T ss_pred HHHHHHHhcccC---CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHh
Confidence 445555555322 45678999999999999987775 46999999999998887554
No 405
>PLN02985 squalene monooxygenase
Probab=61.07 E-value=11 Score=40.70 Aligned_cols=67 Identities=18% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 150 CIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 150 s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
+||.-|+-.|.--.-..|+..-...++... + ........|+++|+|.+.+ |..|++.|++|+-+|-+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 7 WTLLAFVLTWTVFYVTNRKKKATELADAVA---E-ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhhhhc---c-cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 577788888875433333321111222222 2 1122456899999999887 56789999999999865
No 406
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=61.06 E-value=70 Score=32.02 Aligned_cols=35 Identities=23% Similarity=0.107 Sum_probs=25.2
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+||++|.|. |+. +..|..+|..|+..|-+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~ 187 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAH 187 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 467999999874 332 33445569999999999754
No 407
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=60.34 E-value=7.4 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.6
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
|+++|+|.+.+ |+.|+++|++|+-+|-+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 89999999988 677899999999888775
No 408
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=60.21 E-value=1.8e+02 Score=28.64 Aligned_cols=124 Identities=14% Similarity=0.042 Sum_probs=74.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccccccccccccccCCCCCcccCccccccCCC
Q 015160 190 PPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iPDv 267 (412)
+.+|.|+||-=|+|+.+|.+.+- .+++.|++.--+..|.......
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--------------------------------- 63 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--------------------------------- 63 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc---------------------------------
Confidence 34599999999999999999986 5789999998886554222110
Q ss_pred CCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCcchhhhhccCCC
Q 015160 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (412)
Q Consensus 268 ~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLlyh~~~~~g~~ 347 (412)
.....++...||-+.... ....+|+||-+=.= +.-|.+.|+.-.+-|+-==.+|- .
T Consensus 64 -----~l~~~i~vr~~dgl~~l~---~~d~~d~ivIAGMG--G~lI~~ILee~~~~l~~~~rlIL--------------Q 119 (226)
T COG2384 64 -----NLSERIDVRLGDGLAVLE---LEDEIDVIVIAGMG--GTLIREILEEGKEKLKGVERLIL--------------Q 119 (226)
T ss_pred -----CCcceEEEeccCCccccC---ccCCcCEEEEeCCc--HHHHHHHHHHhhhhhcCcceEEE--------------C
Confidence 111235566667554432 13478988754210 11122333333333332112220 1
Q ss_pred CCcccCCCHHHHHHHHHhCCCEEEEEe
Q 015160 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (412)
Q Consensus 348 ~~~~ieLS~EEL~~ll~~~GFeii~e~ 374 (412)
| .-...+|++.+..-+|+|..|.
T Consensus 120 P----n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 120 P----NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred C----CCCHHHHHHHHHhCCceeeeee
Confidence 2 2367899999999999999876
No 409
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=59.62 E-value=8.9 Score=36.28 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.1
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.||++|+|.+.+ |+.|+++|.+|.-+|-..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 489999999987 778899999999998664
No 410
>PLN03139 formate dehydrogenase; Provisional
Probab=59.38 E-value=27 Score=36.65 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=23.3
Q ss_pred CccEEEEecccCCh-hhHHHHHHHHHHhccCCcEEEEe
Q 015160 297 AWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 297 ~fD~VvT~FFIDta-~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.-|+|+.+.=+... .+++. +.+...||||.+|||.
T Consensus 255 ~sDvV~l~lPlt~~T~~li~--~~~l~~mk~ga~lIN~ 290 (386)
T PLN03139 255 KCDVVVINTPLTEKTRGMFN--KERIAKMKKGVLIVNN 290 (386)
T ss_pred hCCEEEEeCCCCHHHHHHhC--HHHHhhCCCCeEEEEC
Confidence 35888776543322 22332 5678889999999996
No 411
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=59.13 E-value=94 Score=32.06 Aligned_cols=29 Identities=38% Similarity=0.536 Sum_probs=22.2
Q ss_pred CCCeEEEecCCC--Ch-hHHHHHHcCCeEE-EE
Q 015160 189 SPPACLVPGAGL--GR-LALEISHLGFISQ-GN 217 (412)
Q Consensus 189 ~~~rVLvPGCGl--GR-La~eLA~~Gf~V~-Gn 217 (412)
+..-||+=||=+ || ||..|.++||.|. |+
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agc 60 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGC 60 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEe
Confidence 455699999955 55 4888999999986 44
No 412
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=59.08 E-value=18 Score=34.83 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=26.6
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ ++|..+..+|+. |..+....-+....
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~ 177 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGV 177 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 5678999875 488888888776 88887775555443
No 413
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=58.97 E-value=8.9 Score=37.04 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
|+++|+|.-.+ |++|+++|++|+-+|-..
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 89999999877 899999999999999884
No 414
>PRK08163 salicylate hydroxylase; Provisional
Probab=58.93 E-value=9.7 Score=38.41 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+.+|+++|+|.+.| |..|++.|+.|+-+|-+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 46899999999988 667788899999998654
No 415
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.68 E-value=35 Score=35.87 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=60.1
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHH--HHhhhhcccccccccccccccccCCCCCcccCccccccC
Q 015160 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMIC--SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (412)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~--s~filn~~~~~~~~~I~P~i~~~sn~~s~~~qlr~v~iP 265 (412)
..+|||+=+|+|-=+..+|.. |. .|+.||+|+..... .|..+|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------------------------- 101 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------------------------- 101 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-------------------------------
Confidence 468999999999887777666 55 79999999977643 33223210
Q ss_pred CCCCCCCCCCCceeEEecccccccCCCCCCCCccEEEEecccCChhhHHHHHHHHHHhccCCcEEE
Q 015160 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (412)
Q Consensus 266 Dv~p~~~~~~~~~s~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wI 331 (412)
.+...+..|...+-. .....||+|= ||.--...-|++...+.+|.||++-
T Consensus 102 ----------~~~~v~n~DAN~lm~--~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 102 ----------EDAEVINKDANALLH--ELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred ----------ccceeecchHHHHHH--hcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEE
Confidence 011222244443322 1135666651 4444445678999999999999985
No 416
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=58.42 E-value=9.1 Score=39.01 Aligned_cols=29 Identities=21% Similarity=0.217 Sum_probs=24.1
Q ss_pred eEEEecCCCC-hh-HHHHHHcCCeEEEEeCC
Q 015160 192 ACLVPGAGLG-RL-ALEISHLGFISQGNEFS 220 (412)
Q Consensus 192 rVLvPGCGlG-RL-a~eLA~~Gf~V~GnD~S 220 (412)
+|+++|+|.. .. |++||+.|.+|+-+|-.
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~ 33 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRH 33 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7999999954 43 78999999999988853
No 417
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=58.38 E-value=9.1 Score=41.38 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.8
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (412)
.||.+.|+|+..| |++||++||+||-.|-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEec
Confidence 4799999999999 7899999999997763
No 418
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=58.18 E-value=9.2 Score=42.87 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
++..+||++|+|.|.| |..|+++|++|+-+|-.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3667999999999998 66778889999998854
No 419
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=57.94 E-value=50 Score=31.50 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=25.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecCc
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GPL 336 (412)
..+|+|+.+.-- ...+....++|+++|.++++|..
T Consensus 197 ~~vd~vld~~g~------~~~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 197 AGADVVIEAVGH------QWPLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhccCCEEEEEccC
Confidence 458988764211 23577788999999999998743
No 420
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=57.79 E-value=9.5 Score=38.73 Aligned_cols=34 Identities=18% Similarity=0.066 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (412)
....|+++|+|.+.+ |..|++.|++|+-+|-...
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 346799999999988 5668999999999986553
No 421
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=57.43 E-value=8.7 Score=40.59 Aligned_cols=30 Identities=27% Similarity=0.278 Sum_probs=25.5
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.|+++|+|.|.| |..||++|++|+-+|=+.
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~ 33 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERYL 33 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 389999999999 567799999999887653
No 422
>PRK06753 hypothetical protein; Provisional
Probab=57.35 E-value=10 Score=37.97 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=25.6
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+||+.|+|.+.| |..|+++|++|+-+|-..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 699999999987 566899999999998554
No 423
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=57.05 E-value=59 Score=30.77 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=27.4
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+-|+ |+|+.+..+|+. |+.|....-+....
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~ 177 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKC 177 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678998874 688887777654 99998888777665
No 424
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.01 E-value=43 Score=32.80 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=28.4
Q ss_pred CCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG--lGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+| +|.++..+|+. |.+|....-+..-.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~ 203 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKL 203 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 56789998875 88888888776 88998888876554
No 425
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=56.60 E-value=10 Score=29.52 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.3
Q ss_pred EecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 195 VPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 195 vPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
++|+|.+.| |+.|++.|++|+-.|-+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 579998888 788999999999888765
No 426
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=56.23 E-value=19 Score=33.35 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=29.0
Q ss_pred eEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015160 192 ACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSS 228 (412)
Q Consensus 192 rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (412)
+|-++|+|+ | .+|..+|..|+.|+-.|.+...+..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence 588999986 3 568888999999999999999986544
No 427
>PRK07538 hypothetical protein; Provisional
Probab=56.18 E-value=10 Score=38.91 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=25.6
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+|+++|+|.+.| |..|+++|+.|+-+|-+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 699999999998 555788999999998654
No 428
>PLN02688 pyrroline-5-carboxylate reductase
Probab=55.97 E-value=76 Score=30.45 Aligned_cols=34 Identities=6% Similarity=0.252 Sum_probs=24.6
Q ss_pred CccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015160 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (412)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~ 333 (412)
.-|+|+.|. ....+.+.++.+...+++|.++|..
T Consensus 61 ~aDvVil~v---~~~~~~~vl~~l~~~~~~~~~iIs~ 94 (266)
T PLN02688 61 SSDVIILAV---KPQVVKDVLTELRPLLSKDKLLVSV 94 (266)
T ss_pred cCCEEEEEE---CcHHHHHHHHHHHhhcCCCCEEEEe
Confidence 358887776 2445778888887788888888853
No 429
>PRK07588 hypothetical protein; Provisional
Probab=55.16 E-value=11 Score=38.19 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.3
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
+|+++|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERA 32 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCC
Confidence 699999999987 67789999999999844
No 430
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=55.01 E-value=67 Score=31.27 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=30.1
Q ss_pred HhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEE--eCCHHHH
Q 015160 179 DALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGN--EFSYYMM 224 (412)
Q Consensus 179 ~~~~p~~~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~Gn--D~S~~ML 224 (412)
.++||-.-.-++.+||++|.|.=-+ +.-|.+.|..|+-+ +++..+.
T Consensus 14 ~~~~pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~ 63 (223)
T PRK05562 14 NKYMFISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFL 63 (223)
T ss_pred CCEeeeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHH
Confidence 4445522122567999999997554 44566778877654 8888775
No 431
>PRK09126 hypothetical protein; Provisional
Probab=54.97 E-value=10 Score=38.21 Aligned_cols=31 Identities=26% Similarity=0.172 Sum_probs=26.2
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4699999999998 566888999999998653
No 432
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=54.93 E-value=86 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=27.0
Q ss_pred eEEEecCCCC--hhHHHHHHcCCeEEEEeCCHHHH
Q 015160 192 ACLVPGAGLG--RLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 192 rVLvPGCGlG--RLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
+|-++|+|.= .+|..|++.|+.|+|.|.+..-+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v 36 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKV 36 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 5888999853 45778889999999999998654
No 433
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=54.81 E-value=46 Score=34.01 Aligned_cols=34 Identities=29% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ 222 (412)
++.+||+.|+| .|.++..+|+. |..|.+++-+..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~ 213 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSE 213 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChH
Confidence 56789998875 56667777765 999999887754
No 434
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.80 E-value=18 Score=33.42 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 015160 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~M 223 (412)
.+.+||+.|+ |+|+ ++..|+++|++|.+.+-+..-
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~ 41 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEA 41 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 3458999997 5666 577788889999999998754
No 435
>PRK09072 short chain dehydrogenase; Provisional
Probab=54.45 E-value=1.9e+02 Score=27.19 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=26.2
Q ss_pred CCeEEEecCC--CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015160 190 PPACLVPGAG--LGR-LALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 190 ~~rVLvPGCG--lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (412)
+.+||+.|++ +|+ ++..|+++|+.|.+++-+..-+
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~ 42 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL 42 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 4579999864 444 4667788899999999886543
No 436
>PLN02712 arogenate dehydrogenase
Probab=54.20 E-value=49 Score=37.14 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=27.0
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ 222 (412)
.+.+|.++|+|. |.++..|.+.|+.|.+.|-+..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 457999999876 5567777778999999998853
No 437
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=54.14 E-value=12 Score=38.33 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=26.7
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4699999999998 566799999999998765
No 438
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=53.69 E-value=31 Score=33.74 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCChh----HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGLGRL----ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL----a~eLA~~Gf~V~GnD~S~ 221 (412)
.+.+||+.|+ +|.+ +..|+++|+.|.+...+.
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4568999994 4443 555677799998776554
No 439
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=53.47 E-value=73 Score=30.93 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.2
Q ss_pred CCccEEEEecccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015160 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (412)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yl~~I~~~LKPGG~wIN~GP 335 (412)
+.+|+|+.+ ... ...++.+.++|++||.++.+|.
T Consensus 224 ~~vD~vi~~---~~~---~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 224 EPLDAAIIF---APV---GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcccEEEEc---CCc---HHHHHHHHHHhhcCCEEEEEcC
Confidence 347877542 111 2568899999999999998774
No 440
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=53.36 E-value=12 Score=28.61 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=23.2
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCcc
Q 015160 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (412)
Q Consensus 306 FIDta~Ni~~yl~~I~~~LKPGG~wIN~GPLl 337 (412)
|||..+.+.+++. ...-.+.||.+||.|||-
T Consensus 24 FIDDsE~~de~~~-~~~~~~~~GFfv~~G~le 54 (55)
T PF08729_consen 24 FIDDSEAYDEYVP-DNVTTKHGGFFVNSGELE 54 (55)
T ss_pred CcCCHHHHhhhhh-hhhhhhcCCceEeccccc
Confidence 7888774555554 456678999999999974
No 441
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=53.24 E-value=34 Score=33.77 Aligned_cols=44 Identities=16% Similarity=0.076 Sum_probs=32.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C---CeEEEEeCCHHHHHHHHhhhh
Q 015160 189 SPPACLVPGAGLGRLALEISHL-G---FISQGNEFSYYMMICSSFILN 232 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G---f~V~GnD~S~~ML~~s~filn 232 (412)
.+.++-||.||.|+|.--|.-+ + -.|.|-|++..||..|+.-|+
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 5678999999999996665543 2 368899999999988886665
No 442
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=53.18 E-value=17 Score=35.05 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=33.3
Q ss_pred HHHHHHhhC-CCCCCCCCCeEEEecCCCChhHHHHHHc--C--------CeEEEEeCCHHHHHHHH
Q 015160 174 ILEELDALF-PNRSKESPPACLVPGAGLGRLALEISHL--G--------FISQGNEFSYYMMICSS 228 (412)
Q Consensus 174 Il~~L~~~~-p~~~~~~~~rVLvPGCGlGRLa~eLA~~--G--------f~V~GnD~S~~ML~~s~ 228 (412)
+++.+++.. |. .+.+|+++|+|.|+|+..+.+. - -.+.-+|.|+.|-..-+
T Consensus 6 ~~~~~~~~~~p~----~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~ 67 (252)
T PF02636_consen 6 IAQMWEQLGRPS----EPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK 67 (252)
T ss_dssp HHHHHHHCT--S----S-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred HHHHHHHcCCCC----cCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence 455555542 21 3479999999999999998654 1 36889999998864433
No 443
>PRK07045 putative monooxygenase; Reviewed
Probab=53.14 E-value=12 Score=37.81 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..+|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 45899999999988 667788899999998544
No 444
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=53.12 E-value=15 Score=35.14 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=25.1
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCC-eEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGRL-ALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRL-a~eLA~~Gf-~V~GnD~S~ 221 (412)
...+||++||| +|.. +..||+.|. .++-+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 34689999998 4544 778899998 577777764
No 445
>PRK05868 hypothetical protein; Validated
Probab=52.97 E-value=12 Score=38.04 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=25.1
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+|++.|+|.+.+ |..|+++|+.|+-+|-+.
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 799999999987 566789999999888543
No 446
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=52.96 E-value=21 Score=34.96 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=26.8
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..|+++|+|...+ |+.|++.|++|.-+|-..
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4699999999998 778899999999998653
No 447
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=52.77 E-value=56 Score=32.83 Aligned_cols=36 Identities=19% Similarity=0.120 Sum_probs=26.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+| +|.++..+|+. |..|.+++-+...+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~ 217 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKR 217 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 56789988764 56677777666 88888888776554
No 448
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=52.44 E-value=31 Score=32.18 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=23.0
Q ss_pred eEEEecCCCCh--hHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAGLGR--LALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCGlGR--La~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|=+.|.|.=. +|..||+.|+.|.|+|....-+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~ 37 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVE 37 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHH
Confidence 57777666543 36778999999999999998653
No 449
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=52.43 E-value=46 Score=32.18 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=27.8
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ ++|..+..+|+. |..|.+++-+..-.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~ 183 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKC 183 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678999884 688888888765 88998888777554
No 450
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=52.34 E-value=12 Score=37.98 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=25.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
..|++.|.|.+.+ |..|+++|++|+-+|-.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 3699999999988 55678999999999965
No 451
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=51.85 E-value=36 Score=33.02 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=28.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.|+ ++|..+..+|++ |..|.++.-+.....
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE 178 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 5678999884 688888888776 888988887776543
No 452
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=51.78 E-value=14 Score=39.19 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=27.4
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (412)
.+|++.|.|+|.| |.-|+++|++|...|.+..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5799999999999 5566889999999998653
No 453
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=51.73 E-value=1e+02 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.091 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (412)
+..+||++|+|+|=-+.-.|. .|..|.--|+...+..
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~ 123 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN 123 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH
Confidence 467899999999944555555 3677887888776653
No 454
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=51.64 E-value=15 Score=32.11 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=23.0
Q ss_pred eEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015160 192 ACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (412)
+||+.||| +|. ++..|++.|. .++-+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999998 565 4777888898 588887653
No 455
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=51.57 E-value=19 Score=39.02 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=27.3
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
..+.+|+++|+|...| |..|+++|+.|+.+|-.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 3678999999998877 56678889999999843
No 456
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=51.42 E-value=13 Score=38.00 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.9
Q ss_pred eEEEecCCCChh--HHHHHHcC-CeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLG-FISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~G-f~V~GnD~S~ 221 (412)
+|+++|+|.|.| |..|+++| ++|+-+|-+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 799999999987 55566778 5898888654
No 457
>PRK06847 hypothetical protein; Provisional
Probab=51.28 E-value=16 Score=36.51 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45899999999998 666788999999998654
No 458
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=51.23 E-value=47 Score=32.19 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=28.5
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
++.+||+.| .++|.++..+|+. |.+|.+++-+..-+.
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~ 179 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQ 179 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 567899875 4688888888765 999999988876653
No 459
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.03 E-value=12 Score=38.15 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=26.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 599999999988 677888999999998654
No 460
>PRK06126 hypothetical protein; Provisional
Probab=50.43 E-value=15 Score=39.35 Aligned_cols=31 Identities=29% Similarity=0.261 Sum_probs=26.7
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
...||++|+|.+.| |..|+++|++|+-+|-.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~ 39 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERK 39 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45799999999988 67789999999999844
No 461
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=50.32 E-value=15 Score=37.42 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=26.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.+|+++|+|.+.+ |..|++.|+.|+-+|-..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4799999999988 566799999999999765
No 462
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=50.26 E-value=93 Score=29.83 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=27.5
Q ss_pred CCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015160 190 PPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (412)
Q Consensus 190 ~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (412)
+.+||+.|+ ++|.++..+|+. |..|...+-+..-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQAD 185 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 358999885 678888888775 888888888876543
No 463
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=50.20 E-value=18 Score=37.97 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.6
Q ss_pred CCCeEEEecCC-CChh--HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
+..+|+++|-| +|.- |..|+++|+.|+|.|...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 45689999876 5654 678999999999999854
No 464
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=49.97 E-value=21 Score=34.77 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=24.5
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCC-eEEEEeCCH
Q 015160 189 SPPACLVPGAG-LGRL-ALEISHLGF-ISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRL-a~eLA~~Gf-~V~GnD~S~ 221 (412)
...+||++||| +|.. +..||+.|. ..+-+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 34689999998 6664 677888897 577777653
No 465
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.71 E-value=19 Score=35.59 Aligned_cols=34 Identities=18% Similarity=0.377 Sum_probs=25.7
Q ss_pred CCCeEEEecCCCChhHH----HHHHcCCeEEEEeCCHH
Q 015160 189 SPPACLVPGAGLGRLAL----EISHLGFISQGNEFSYY 222 (412)
Q Consensus 189 ~~~rVLvPGCGlGRLa~----eLA~~Gf~V~GnD~S~~ 222 (412)
....||+-||--|.+++ |+++.||.|.+.--+-+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 45789999998887654 55667999988765543
No 466
>PRK08013 oxidoreductase; Provisional
Probab=49.69 E-value=15 Score=37.49 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..|++.|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 4699999999987 666899999999999654
No 467
>PRK06184 hypothetical protein; Provisional
Probab=49.63 E-value=16 Score=38.67 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=26.2
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
..||++|+|...| |..|++.|+.|+-+|-.
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~ 35 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKA 35 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4699999999988 66789999999999864
No 468
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=49.58 E-value=16 Score=36.97 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
....||++|+|.+.+ |+.|+++|++|+-+|-.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 345799999999987 56689999999999964
No 469
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=49.46 E-value=49 Score=31.71 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ +.|..+..+|+. |..+.+..-+..-+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~ 176 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQV 176 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHH
Confidence 5678999876 488888888776 88887776665443
No 470
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=49.44 E-value=15 Score=37.49 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=25.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
..|+++|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4699999999988 66788999999999964
No 471
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=49.43 E-value=17 Score=40.21 Aligned_cols=33 Identities=21% Similarity=0.111 Sum_probs=28.5
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.+.+|+++|+|.+.| |..|+++|+.|+-+|-..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 467999999999988 688899999999998643
No 472
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=48.93 E-value=17 Score=33.46 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred eEEEecCC-CChh-HHHHHHcCCe-EEEEeCCH
Q 015160 192 ACLVPGAG-LGRL-ALEISHLGFI-SQGNEFSY 221 (412)
Q Consensus 192 rVLvPGCG-lGRL-a~eLA~~Gf~-V~GnD~S~ 221 (412)
+||++||| +|.. +..||+.|+. ++-+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 59999999 5664 7888999984 88888876
No 473
>PRK12831 putative oxidoreductase; Provisional
Probab=48.93 E-value=19 Score=38.20 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=27.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
.+.+|+++|+|.+.| |+.|+++|++|+-+|-.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 567999999998877 78999999999998853
No 474
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=48.84 E-value=14 Score=36.99 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=25.7
Q ss_pred EEEecCCCChh--HHHHHHcC-CeEEEEeCCHH
Q 015160 193 CLVPGAGLGRL--ALEISHLG-FISQGNEFSYY 222 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~G-f~V~GnD~S~~ 222 (412)
|+++|+|.+.+ |..|++.| ++|+-+|-...
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 89999999988 56689999 99999987643
No 475
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=48.70 E-value=1.1e+02 Score=32.93 Aligned_cols=39 Identities=15% Similarity=0.006 Sum_probs=29.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHH
Q 015160 187 KESPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMI 225 (412)
Q Consensus 187 ~~~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~ 225 (412)
.+++.||||..|--|.=+..+|.+ + =.+.|||-+..=+.
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~ 280 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLK 280 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHH
Confidence 357889999999998887777765 1 25789998876653
No 476
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=48.64 E-value=1.1e+02 Score=33.07 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=28.3
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|-++|.|. +.+|..|+++||.|++.|.+.....
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~ 38 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTE 38 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 578888885 4568889999999999999998753
No 477
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=48.41 E-value=64 Score=33.27 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=25.6
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCe-EEEEeCCHHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISH-LGFI-SQGNEFSYYMMICS 227 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~-V~GnD~S~~ML~~s 227 (412)
++.+||+.|+| +|.++..+|+ +|.. +...|.+..=+..+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a 226 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQA 226 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHH
Confidence 56789997774 5666666766 4886 45667776555433
No 478
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=48.35 E-value=1.2e+02 Score=29.15 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCC-eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHH
Q 015160 189 SPP-ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYM 223 (412)
Q Consensus 189 ~~~-rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~M 223 (412)
++. +||+.|+ ++|.++..+|+. |..+....-+..-
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~ 182 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEE 182 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 456 8999986 578887777765 8888776655544
No 479
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=48.34 E-value=1.2e+02 Score=29.68 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-C-CeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-G-FISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-G-f~V~GnD~S~~ML 224 (412)
++.+||+.|+| +|.++..+|+. | ..|.+++-|..-+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~ 205 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEAL 205 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence 46789988754 45556666665 7 8888888777554
No 480
>PLN02487 zeta-carotene desaturase
Probab=48.31 E-value=28 Score=38.25 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCcccChhHHhhchHHHHHHHHhhCCCCC-C--CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 147 KVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRS-K--ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 147 kv~s~L~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~-~--~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
.+...|+.++-|...+-. +..+|... . .+..+|+++|.|.+.| |+.|+++|++|+-+|-..
T Consensus 43 ~~~~~l~r~~~d~~~~~~--------------~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 43 SVSSSLDSNVSDMSVNAP--------------KGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred hhhHHHHHHhhhhhcccc--------------ccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 455688888877765421 01122111 1 1345999999999988 678899999999888654
No 481
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=48.12 E-value=26 Score=34.85 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=29.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (412)
+|.++|+|+ +.+|..|+++|+.|++.|.+..-+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~ 39 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAA 39 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence 699999995 3578889999999999999987654
No 482
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=48.07 E-value=41 Score=36.44 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.5
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S 220 (412)
.+.+|.++|.|. |+ +|..+...|..|.+.|-+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence 467899999874 44 455556668899998864
No 483
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=47.60 E-value=23 Score=34.85 Aligned_cols=32 Identities=22% Similarity=0.100 Sum_probs=27.5
Q ss_pred CeEEEecCCCC-hhHHHHHHcC--CeEEEEeCCHH
Q 015160 191 PACLVPGAGLG-RLALEISHLG--FISQGNEFSYY 222 (412)
Q Consensus 191 ~rVLvPGCGlG-RLa~eLA~~G--f~V~GnD~S~~ 222 (412)
.+||+.|+|.+ .++..|.+.| +.|.+.|.+..
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~~ 36 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISEL 36 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCCc
Confidence 48999999999 6888999994 99999998853
No 484
>PRK07208 hypothetical protein; Provisional
Probab=47.43 E-value=17 Score=37.84 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=27.3
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
..+|+++|+|...| |+.|+++|+.|+-+|-+.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 34799999999999 678999999999888654
No 485
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.35 E-value=18 Score=42.11 Aligned_cols=32 Identities=28% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (412)
.+.+|+++|+|-..| |+.|+++||.|+-.|-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC
Confidence 568999999999999 68899999999998843
No 486
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=47.32 E-value=56 Score=32.81 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=26.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015160 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 226 (412)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (412)
++.+||+.|+| +|.++..+|+. |+. |.+.+-+..-+..
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~ 223 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK 223 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 56789998764 45666666664 875 7888877766543
No 487
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.31 E-value=29 Score=34.08 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.4
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015160 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICS 227 (412)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (412)
+|.++|+|+ +.+|..|++.|+.|+..|.+...+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~ 40 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESA 40 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHH
Confidence 699999984 457888899999999999999887543
No 488
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=47.24 E-value=32 Score=34.23 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=31.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015160 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (412)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (412)
++.+||+.|||. |.++..+|+. |..|.+++.+...+..+.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 567999999975 7777777765 889999999988775443
No 489
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=47.15 E-value=23 Score=39.82 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=27.4
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015160 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (412)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (412)
.+.+|+++|+|.+.| |..|+++|+.|+-+|-
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~ 462 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEA 462 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence 567999999999887 6788999999999985
No 490
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.86 E-value=18 Score=36.34 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.0
Q ss_pred CeEEEecCCCChh--HHHHHHc---CCeEEEEeC
Q 015160 191 PACLVPGAGLGRL--ALEISHL---GFISQGNEF 219 (412)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~---Gf~V~GnD~ 219 (412)
..||++|+|.+.+ |+.|+++ |++|+.+|-
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 4699999999987 5667777 999999997
No 491
>PRK06849 hypothetical protein; Provisional
Probab=46.80 E-value=27 Score=35.68 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (412)
.+.+||+.|+|.+ .++..|.+.|+.|.++|....-+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 4579999999997 47889999999999999986443
No 492
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=46.77 E-value=17 Score=37.13 Aligned_cols=30 Identities=30% Similarity=0.234 Sum_probs=25.4
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015160 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (412)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (412)
|||+|+|.+.| |+.+|++|.+|..+|-...
T Consensus 2 VvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 2 VVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp EEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred EEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 89999999988 8888999999999998775
No 493
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=46.35 E-value=29 Score=32.81 Aligned_cols=32 Identities=22% Similarity=0.401 Sum_probs=26.4
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCC
Q 015160 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFS 220 (412)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S 220 (412)
...+|++.||| +|. .+..||+.|+ .++-+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35689999998 444 5788899999 69999998
No 494
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=46.28 E-value=44 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=24.5
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCe-EEEEeCCHHHH
Q 015160 189 SPPACLVPGA-GLGRLALEISHL-GFI-SQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~-V~GnD~S~~ML 224 (412)
++.+||+.|+ |+|..+..+|+. |.. +.+++-+..-+
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~ 212 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERL 212 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHH
Confidence 5668888666 456666777666 754 67888776554
No 495
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=46.26 E-value=63 Score=30.60 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ |+|+.+..+++ +|..+...+.+...+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~ 182 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKR 182 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHH
Confidence 4568999986 67777666654 489998888887554
No 496
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=46.01 E-value=27 Score=36.77 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=18.9
Q ss_pred ccCCCHHHHHHHHHhC-CCEEEEEee
Q 015160 351 SIELSLEDVKRVALHY-GFEFEKEKT 375 (412)
Q Consensus 351 ~ieLS~EEL~~ll~~~-GFeii~e~~ 375 (412)
.+..|.+|+++++++- -|+|.+.+.
T Consensus 284 ~Y~ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 284 VYAPSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred ccCCCHHHHHHHHhhcCCEEeeeeEE
Confidence 3456999999999954 488877554
No 497
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=45.56 E-value=19 Score=36.33 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=26.8
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015160 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (412)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (412)
...|+++|+|.+.+ |+.|++.|++|+-+|-..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 34799999999887 667899999999998653
No 498
>PRK12829 short chain dehydrogenase; Provisional
Probab=45.55 E-value=33 Score=32.00 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015160 189 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (412)
Q Consensus 189 ~~~rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (412)
++.+||+.|+ |+|+. +..|+++|+.|.+++.+...+
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~ 48 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL 48 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4568999997 44443 445566799999999887654
No 499
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=45.54 E-value=19 Score=35.95 Aligned_cols=28 Identities=29% Similarity=0.347 Sum_probs=22.7
Q ss_pred eEEEecCCC-Chh-HHHHHHcCCeEEEEeC
Q 015160 192 ACLVPGAGL-GRL-ALEISHLGFISQGNEF 219 (412)
Q Consensus 192 rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~ 219 (412)
.|+++|.|. |-- |++|+++|.+|+-+|-
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~ 31 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQ 31 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 489999994 433 8899999999988875
No 500
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=45.52 E-value=55 Score=31.64 Aligned_cols=51 Identities=25% Similarity=0.318 Sum_probs=30.1
Q ss_pred eeEEecccccccCCCCCCCCccEEEEec-cc--CChhhHHHHHHHHHHhccCCc
Q 015160 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DTAHNIVEYIEIISRILKDGG 328 (412)
Q Consensus 278 ~s~~~GDF~ely~~~~~~~~fD~VvT~F-FI--Dta~Ni~~yl~~I~~~LKPGG 328 (412)
+...+.|.+++......-.-||+|++.| +. +..+.....++.+...||--|
T Consensus 43 ~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~ag 96 (211)
T COG2910 43 VTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGAG 96 (211)
T ss_pred ceeecccccChhhhHhhhcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcC
Confidence 4567778777643111234699999998 44 333334445666667777633
Done!