BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015161
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U9I|A Chain A, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp.
pdb|3U9I|B Chain B, The Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseiflexus Sp
Length = 393
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 21/377 (5%)
Query: 37 FKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL 96
F+++T T+ PL++PL PF IA+ + N+ + +EL++G G+GEA
Sbjct: 20 FQSMTAPTTIRALTVA--PLDIPLHEPFGIASGAQEVARNLLVAVELTDGTRGYGEAAPF 77
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMAL 156
P E Q A A A L E + + LPG ++ R A+E A+
Sbjct: 78 PAFNGETQDMAHA-AILAARSLVEGADVREWRRIALALPALPGMTGSA----RCAIETAI 132
Query: 157 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--- 213
+DA+ + +PLW FGG + ++ TD+TI S AA A +G TT+K+K+G
Sbjct: 133 LDALTRRARLPLWAFFGGAATSLETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGD 192
Query: 214 ------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+ ++ D+ + AIR V P + ILD N GY +A+ +L+ L G+ P LFEQ
Sbjct: 193 PDATTIRTMEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALFEQ 252
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
PV +DD EGL ++ + V VAADES S D ++ + DV+NIKL K G++
Sbjct: 253 PVAKDDEEGLRRLTATRR----VPVAADESVASATDAARLARNAAVDVLNIKLMKCGIVE 308
Query: 328 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGY 387
AL+I + R +GL+LMIGGMVE+ LAM + +AG G F+F+DLDTPL L+E+P G
Sbjct: 309 ALDIAAIARTAGLHLMIGGMVESLLAMTVSACFAAGQGGFRFVDLDTPLFLAENPFDGGM 368
Query: 388 EVSGAVYKFTNAR-GHG 403
G T GHG
Sbjct: 369 TYHGGTIDLTLIEAGHG 385
>pdb|3IK4|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
pdb|3IK4|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Herpetosiphon Aurantiacus
Length = 365
Score = 218 bits (555), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 194/357 (54%), Gaps = 10/357 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+Q +N+PL PF IA+ NV ++++L++G +G GEA P V+ E Q
Sbjct: 7 IQAISAEAINLPLTEPFAIASGAQAVAANVLVKVQLADGTLGLGEAAPFPAVSGETQ--- 63
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
S A E L+ A + +A +L H R +EMA++DA+ + MP
Sbjct: 64 -TGTSAAIERLQSHLLGADVRGWRKLAAMLD-HAEHEAAAARCGLEMAMLDALTRHYHMP 121
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAI 226
L FGGVS + TD+TI AA A +G ++K+K G ++ D+ LRAI
Sbjct: 122 LHVFFGGVSKQLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGVDVAYDLARLRAI 181
Query: 227 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
P + I+D N GY + A+ + VLFEQP+ R+DW G+ V+
Sbjct: 182 HQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA---- 237
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346
+ G +VAADES RS DV +I + A VINIKL K GV L++I + +A+GL LMIGG
Sbjct: 238 QSGFAVAADESARSAHDVLRIAREGTASVINIKLMKAGVAEGLKMIAIAQAAGLGLMIGG 297
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
MVE+ LAM F+ +L+AG G F FIDLDTPL ++E P + G+ +G + + GHG
Sbjct: 298 MVESILAMSFSANLAAGNGGFDFIDLDTPLFIAEHPFIGGFAQTGGTLQLADVAGHG 354
>pdb|3S5S|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
pdb|3S5S|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme (PsiCOM TARGET 200551) FROM SORANGIUM
CELLULOSUM
Length = 389
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 143/358 (39%), Positives = 192/358 (53%), Gaps = 10/358 (2%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R L++PL PF IA ++ N+ + +EL++G +G+GEA LP E Q +
Sbjct: 7 IRRVSIEALDIPLHEPFGIAGGAQERAANLLVTVELADGTLGFGEAAPLPAFNGETQDGS 66
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMP 167
A L+E+ + + VA L R A+E A++DA+ K MP
Sbjct: 67 RAAAVS----LREAVVGSDARAWRAVARALREASGGGAGAARCAIETAILDALTKRAGMP 122
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK-EDIEVLRAI 226
LW FGG +TTDITI SP A E A + GF LK+KVG L D + AI
Sbjct: 123 LWAFFGGSGTALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGRLAASDPARIEAI 182
Query: 227 RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
A P +S ILD N G EA+ ++ +G L EQPV RDDW+G+ V+
Sbjct: 183 HAAAPGASLILDGNGGLTAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR---- 238
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346
+ GV VAADES S +DV ++ A V+NIKL K G+ AL+I V RA+GL LMIGG
Sbjct: 239 RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMKGGIAEALDIAAVARAAGLGLMIGG 298
Query: 347 MVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNAR-GHG 403
MVE+ LAM + +AGLG F F+DLDTPL L+E+P G+ G R GHG
Sbjct: 299 MVESVLAMTASACFAAGLGGFSFVDLDTPLFLAENPFDGGFVQRGPALSLEGIRAGHG 356
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 197 bits (502), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 186/358 (51%), Gaps = 13/358 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
S VLK PA+ S+ G A L H + +AAVEMAL D A+ +PL
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPL 119
Query: 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 227
+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR
Sbjct: 120 YQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIR 179
Query: 228 A-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ D
Sbjct: 180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT----D 235
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
+ ADES + ++++ AD+INIKL K G+ GA +I + A G+ M+G
Sbjct: 236 ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 295
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 296 SMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 10/319 (3%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD 182
+F + L F S ++AAV+ A +DA+++ + + L GG + I TD
Sbjct: 79 VRNYARIFEITDRLFG---FPS---LKAAVQFATLDALSQELGTQVCYLLGGKRDEIETD 132
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG 242
T+ I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN G
Sbjct: 133 KTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMG 192
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302
Y +EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+
Sbjct: 193 YTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKF 248
Query: 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362
DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H +
Sbjct: 249 DVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFAL 308
Query: 363 GLGCFKFIDLDTPLLLSED 381
G G F+F DLD+ L+L E+
Sbjct: 309 GTGAFEFHDLDSHLMLKEE 327
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/319 (35%), Positives = 169/319 (52%), Gaps = 10/319 (3%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E +
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREXITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD 182
+F + L F S ++AAV+ A +DA+++ + + L GG + I TD
Sbjct: 79 VRNYARIFEITDRLFG---FPS---LKAAVQFATLDALSQELGTQVCYLLGGKRDEIETD 132
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG 242
T+ I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN G
Sbjct: 133 KTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANXG 192
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302
Y +EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+
Sbjct: 193 YTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKF 248
Query: 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362
DV ++VK D +NIKL K G+ AL I+E+ +SGL L IG E+ L + + H +
Sbjct: 249 DVXRLVKEEAVDYVNIKLXKSGISDALAIVEIAESSGLKLXIGCXGESSLGINQSVHFAL 308
Query: 363 GLGCFKFIDLDTPLLLSED 381
G G F+F DLD+ L L E+
Sbjct: 309 GTGAFEFHDLDSHLXLKEE 327
>pdb|3Q45|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q45|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Val
pdb|3Q4D|A Chain A, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|B Chain B, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|C Chain C, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|D Chain D, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|E Chain E, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|F Chain F, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|G Chain G, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|H Chain H, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
pdb|3Q4D|I Chain I, Crystal Structure Of Dipeptide Epimerase From Cytophaga
Hutchinsonii Complexed With Mg And Dipeptide D-Ala-L-Ala
Length = 368
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/341 (28%), Positives = 169/341 (49%), Gaps = 16/341 (4%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEV 117
V L PF I+ L NV +RI ++G +G+GE + E TA + +
Sbjct: 13 VKLKEPFKISLGILTHANNVIVRIHTASGHIGYGECSPFMTIHGESMDTAFIVGQYLAKG 72
Query: 118 LKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN 177
L + + + S ++ ++ G+ +++A +AL D A+ +PL+ GG +
Sbjct: 73 LIGTSCLDIVSNSLLMDAIIYGNSC-----IKSAFNIALYDLAAQHAGLPLYAFLGGKKD 127
Query: 178 TI-TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SF 235
I TD T+ I P + A A + +K GF +K+KVG + + D+E +R IR DS +
Sbjct: 128 KIIQTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGSKELDVERIRMIREAAGDSITL 187
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+DAN+G+ + A+E L L + E+PV R+ + L + + + + AD
Sbjct: 188 RIDANQGWSVETAIETLTLLEPYNIQHC--EEPVSRNLYTALPKIRQACR----IPIMAD 241
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354
ESC + D +++++ D N+KL+K G+ AL II + + + + +GG +E+RL
Sbjct: 242 ESCCNSFDAERLIQIQACDSFNLKLSKSAGITNALNIIRLAEQAHMPVQVGGFLESRLGF 301
Query: 355 GFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDG--YEVSGAV 393
A H++ + D DTPL+ DPV G Y+ G +
Sbjct: 302 TAAAHVALVSKTICYYDFDTPLMFEADPVRGGIVYQQRGII 342
>pdb|3JVA|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JVA|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583
pdb|3JW7|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JW7|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ile-L-Tyr
pdb|3JZU|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3JZU|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Leu-L-Tyr
pdb|3K1G|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3K1G|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Ser-L-Tyr
pdb|3KUM|A Chain A, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|B Chain B, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|C Chain C, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|D Chain D, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|E Chain E, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|F Chain F, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|G Chain G, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
pdb|3KUM|H Chain H, Crystal Structure Of Dipeptide Epimerase From Enterococcus
Faecalis V583 Complexed With Mg And Dipeptide
L-Arg-L-Tyr
Length = 354
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 158/314 (50%), Gaps = 33/314 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
+++ R + L FTIA ++ ++ + IE G VG+GE +T E
Sbjct: 3 IKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGE----T 58
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLLPG-----HQFASQLKVRAA-----VEMALI 157
+ E E+ ++ + GL P H+ ++ A +++A
Sbjct: 59 LAGTLETIELFGQA-----------IIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACY 107
Query: 158 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLK 217
D + + +PL++L GG N + TDIT+ I P A+ A + K GF TLK+KVG ++
Sbjct: 108 DLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIE 167
Query: 218 EDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEG 276
DI ++AIR AV D LDAN+ + P++AV+ ++ L + + L EQPV R D EG
Sbjct: 168 ADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIE--LVEQPVKRRDLEG 225
Query: 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVV 335
L +V+ + ++ ADESC D ++VK DVINIKL K G+ AL+I ++
Sbjct: 226 LKYVTS----QVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQIC 281
Query: 336 RASGLNLMIGGMVE 349
+G+ MIG M E
Sbjct: 282 ETAGIECMIGCMAE 295
>pdb|2P88|A Chain A, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|B Chain B, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|C Chain C, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|D Chain D, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|E Chain E, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|F Chain F, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|G Chain G, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P88|H Chain H, Crystal Structure Of N-succinyl Arg/lys Racemase From
Bacillus Cereus Atcc 14579
pdb|2P8B|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl
Lys.
pdb|2P8C|A Chain A, Crystal Structure Of N-Succinyl ArgLYS RACEMASE FROM
Bacillus Cereus Atcc 14579 Complexed With N-Succinyl Arg
Length = 369
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 167/332 (50%), Gaps = 18/332 (5%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAM--VKASE 113
+ +PL PF I+ + ++ +++E G +G+GE HVT E ++ +K +
Sbjct: 11 IRLPLRNPFVISYGSYSDMPSIIVKMETDEGIIGYGEGVADDHVTGESWESTFHTLKHTL 70
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173
++ ++P M + + ++ + G A +AA+++A D + K ++ P+++L G
Sbjct: 71 TPALIGQNP-MNIEKIHDMMDNTIYGVPTA-----KAAIDIACFDIMGKKLNQPVYQLIG 124
Query: 174 G-VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHP 231
G + I P AE A+ ++G+ + K+KVG N+KED++ + A+R V
Sbjct: 125 GRYHEEFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGTNVKEDVKRIEAVRERVGN 184
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-LFEQPVHRDDWEGLGHVSHIAKDKFGV 290
D + +D N+G+K + L L +G + EQPV DD + + H+ + K +
Sbjct: 185 DIAIRVDVNQGWK--NSANTLTALRSLGHLNIDWIEQPVIADDIDAMAHI----RSKTDL 238
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 349
+ DE +S ++++I+K AD +NIKL K G+ A+++ +G+ +G MVE
Sbjct: 239 PLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKLAHQAEMAGIECQVGSMVE 298
Query: 350 TRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
+ +A H++ ++L PL ++D
Sbjct: 299 SSVASSAGFHVAFSKKIITSVELTGPLKFTKD 330
>pdb|3R0K|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0K|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate Bound, No Mg
pdb|3R0U|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R0U|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Tartrate And Mg Complex
pdb|3R10|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R10|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg Complex
pdb|3R11|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R11|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Mg And Fumarate Complex
pdb|3R1Z|A Chain A, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
pdb|3R1Z|B Chain B, Crystal Structure Of Nysgrc Enolase Target 200555, A
Putative Dipeptide Epimerase From Francisella
Philomiragia : Complex With L- Ala-L-Glu And L-Ala-D-Glu
Length = 379
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 144/300 (48%), Gaps = 16/300 (5%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+ +PL F A + ++++A+ + L NG G+G AP +T + Q
Sbjct: 13 IKIPLKRTFITAVRSTNHIDSLAVELTLDNGVKGYGVAPATTAITGDTLQGXQY------ 66
Query: 116 EVLKESPA-MALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172
+++E A + LGS L + + A+++A D +AK + + +L
Sbjct: 67 -IIREIFAPVILGSDLSDYKQTLELAFKKVXFNSAAKXAIDLAYHDLLAKEQDISVAKLL 125
Query: 173 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAI-RAVHP 231
G +N+I TD++I + AE + + FT +K+K G + DI++L+A+
Sbjct: 126 GAKANSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGADFNRDIQLLKALDNEFSK 185
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+ F DAN+G+ + + +E++ + + + EQPV D + ++ + +
Sbjct: 186 NIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIEQPVKYYDIKAXAEITKFS----NIP 241
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVET 350
V ADES D ++++ + INIKLAK G+L A +I ++ ++G++ +G E+
Sbjct: 242 VVADESVFDAKDAERVIDEQACNXINIKLAKTGGILEAQKIKKLADSAGISCXVGCXXES 301
>pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
Length = 383
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/352 (29%), Positives = 162/352 (46%), Gaps = 24/352 (6%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQ 105
+Q+ E+R L+VPLI P AT+ + + + + L NG +G+GE P P E +
Sbjct: 8 IQKVESRILDVPLIRPHGFATTTSTEQHILLVSVHLENGVIGYGEGVVPGGPWWGGESVE 67
Query: 106 T--AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKS 163
T A+V A ++ A+ + G+ A L A +AAV++A DA A+S
Sbjct: 68 TXKALVDGYLAPVLI----GRAVSELAGIXADL--ERVVARARYAKAAVDVAXHDAWARS 121
Query: 164 VSMPLWRLFGGVSNTITTDITIPI-VSPAE--AAELASKYRKQGFTTLKLKVGK-NLKED 219
+++P+ L GG D+T + V P + AE+ + + G + KLK G + ED
Sbjct: 122 LNVPVRDLLGGTVRD-KVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKXGAGDPAED 180
Query: 220 I-EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
V R V S +D N + + A+ L L E GV LFEQP DD E L
Sbjct: 181 TRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVE--LFEQPTPADDLETLR 238
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRA 337
++ + VSV ADES + + +VK ADVI +K K G+L + +I + A
Sbjct: 239 EITR----RTNVSVXADESVWTPAEALAVVKAQAADVIALKTTKHGGLLESKKIAAIAEA 294
Query: 338 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYE 388
GL +E + + +A + +L P LL + ++ +E
Sbjct: 295 GGLACHGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLKDTYIVQEFE 346
>pdb|1WUF|A Chain A, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
pdb|1WUF|B Chain B, Crystal Structure Of Protein Gi:16801725, Member Of
Enolase Superfamily From Listeria Innocua Clip11262
Length = 393
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 144/306 (47%), Gaps = 20/306 (6%)
Query: 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQT 106
Q+A +PL+APF + L + I + G G+GE A LP T E +
Sbjct: 23 QKARLIHAELPLLAPFKTSYGELKSKDFYIIELINEEGIHGYGELEAFPLPDYTEETLSS 82
Query: 107 AMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSM 166
A++ E L + + + G++ A +AAVE+A+ DA AK
Sbjct: 83 AILIIKEQLLPLLAQRKIRKPEEIQELFSWIQGNEMA-----KAAVELAVWDAFAKMEKR 137
Query: 167 PLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRA 225
L ++ G +I ++I + E +L ++Y QG+ +KLK+ N +DI+ + A
Sbjct: 138 SLAKMIGATKESIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAPN--KDIQFVEA 195
Query: 226 IRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI-A 284
+R P S + DAN Y ++ + +L++L + + + EQP D+ V H
Sbjct: 196 VRKSFPKLSLMADANSAYNREDFL-LLKELDQYDLE--MIEQPFGTKDF-----VDHAWL 247
Query: 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLM 343
+ + + DE+ RS+ DV++ IN+KLA+VG + AL+I E + + +
Sbjct: 248 QKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMSSALKIAEYCALNEILVW 307
Query: 344 IGGMVE 349
GGM+E
Sbjct: 308 CGGMLE 313
>pdb|1JPD|X Chain X, L-Ala-DL-Glu Epimerase
Length = 324
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 145/325 (44%), Gaps = 31/325 (9%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 15 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 66
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GVSN 177
P + G + +LP R A++ AL D A+ L L G +
Sbjct: 67 SVVPQLEKGLTREELQKILPAG------AARNALDCALWDLAARRQQQSLADLIGITLPE 120
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+ T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+
Sbjct: 121 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIV 178
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++GV + EQP+ D L + H + + ADES
Sbjct: 179 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADES 230
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + ++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+
Sbjct: 231 CHTRSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 288
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSED 381
A L + F DLD P L+ D
Sbjct: 289 ALPLVPQV---SFADLDGPTWLAVD 310
>pdb|3RIT|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RIT|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg And Dipeptide
L-Arg-D-Lys
pdb|3RO6|B Chain B, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|A Chain A, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|C Chain C, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|D Chain D, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|E Chain E, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
pdb|3RO6|F Chain F, Crystal Structure Of Dipeptide Epimerase From
Methylococcus Capsulatus Complexed With Mg Ion
Length = 356
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/359 (26%), Positives = 159/359 (44%), Gaps = 25/359 (6%)
Query: 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE 113
R + PL P+ IA +++++N+ + I ++G +G G A HVT E E
Sbjct: 9 RTEHFPLTRPYRIAFRSIEEIDNLIVEIRTADGLLGLGAASPERHVTGE--------TLE 60
Query: 114 ACEVLKESPAMALGSVFGVVAGLLP------GHQFASQLKVRAAVEMALIDAVAKSVSMP 167
AC + LG + G LP + + RAA++MAL D VA+ + +P
Sbjct: 61 ACHAALDHDR--LGWLMGRDIRTLPRLCRELAERLPAAPAARAALDMALHDLVAQCLGLP 118
Query: 168 LWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
L + G +++ T +TI I E A ++ GF LK+K+ + ++D E LR +
Sbjct: 119 LVEILGRAHDSLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCGDEEQDFERLRRLH 178
Query: 228 AVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
+ + +D N+ Y + + + E+G+ + P R DW L + +
Sbjct: 179 ETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIEQPFPAGRTDW--LRALPKAIRR 236
Query: 287 KFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 344
+ +AADES D + NIKL K G L A I + +G++LM
Sbjct: 237 R----IAADESLLGPADAFALAAPPAACGIFNIKLMKCGGLAPARRIATIAETAGIDLMW 292
Query: 345 GGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
G M E+R+++ A H + +++DLD L+ D G+ + + T G G
Sbjct: 293 GCMDESRISIAAALHAALACPATRYLDLDGSFDLARDVAEGGFILEDGRLRVTERPGLG 351
>pdb|3EEZ|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Silicibacter Pomeroyi
Length = 378
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 150/328 (45%), Gaps = 26/328 (7%)
Query: 44 FTVDVQRAENRPLNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
++ + R +++PL P+ ++ RL + ++ +++E G GWGE H
Sbjct: 1 MSLKITRITVYQVDLPLEHPYWLSGGRLKFELLDATLVKLETDAGITGWGEGTPWGHTYV 60
Query: 102 EDQQTAMVKASE--ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDA 159
+ E A VL P L V + LPGH +A ++ ++MA D
Sbjct: 61 PAHGPGIRAGIETMAPFVLGLDPRRLL-DVERAMDIALPGHLYA-----KSPIDMACWDI 114
Query: 160 VAKSVSMPLWRLFGGVSNT---ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNL 216
++ +P+ L GG S T I + + V E + +YR++G+ +K+G ++
Sbjct: 115 AGQAAGLPIADLMGGGSRTPRPIASSVGAKSVE--ETRAVIDRYRQRGYVAHSVKIGGDV 172
Query: 217 KEDIEVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 275
+ DI +R + + P + D N G+ Q+A+ V+ ++ V +FEQP E
Sbjct: 173 ERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV---MFEQP-----GE 224
Query: 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEV 334
L ++ I + V+ DE +L D ++ + LA+V IKL +VG L A + ++
Sbjct: 225 TLDDIAAI-RPLHSAPVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARMRDI 283
Query: 335 VRASGLNLMIGGMVETRLAMGFAGHLSA 362
G+++ + + LA A HL+A
Sbjct: 284 ALTHGIDMFVMATGGSVLADAEALHLAA 311
>pdb|2QDD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|2QDD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism
pdb|3FVD|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
pdb|3FVD|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Roseovarius Nubinhibens Ism Complexed With Magnesium
Length = 378
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/315 (27%), Positives = 142/315 (45%), Gaps = 24/315 (7%)
Query: 56 LNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPH--VTAEDQQTAMVKA 111
L++PL P+ ++ RL D++++ +RI+ G GWGE H + A A
Sbjct: 13 LDLPLAKPYWLSGGRLKFDRLDSTYLRIDTDEGVTGWGEGCPWGHSYLPAHGPGLRAGIA 72
Query: 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
+ A +L P +L V V+ LPGH + V++ ++MA D + + +PLW+L
Sbjct: 73 TLAPHLLGLDP-RSLDHVNRVMDLQLPGHSY-----VKSPIDMACWDILGQVAGLPLWQL 126
Query: 172 FGGVSNT-ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIRAV 229
GG + T + + +I +P + L ++ QG+ T K+ G + +DI + AI A
Sbjct: 127 LGGEAATPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAG 186
Query: 230 HPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288
PD + D N + P AVEVL + EQP + L +H+A+ +
Sbjct: 187 LPDGHRVTFDVNRAWTPAIAVEVLNSVRARD----WIEQPC-----QTLDQCAHVAR-RV 236
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGM 347
+ DE D + + IK +VG L A +I + + G + I +
Sbjct: 237 ANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQIRDFGVSVGWQMHIEDV 296
Query: 348 VETRLAMGFAGHLSA 362
T LA A HL+A
Sbjct: 297 GGTALADTAALHLAA 311
>pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
Length = 381
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/357 (25%), Positives = 165/357 (46%), Gaps = 35/357 (9%)
Query: 43 TFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAE 102
+ T V++ E+ ++VP I P ++ + + V +R+ S+G G GEA + ++
Sbjct: 2 SLTATVEQIESWIVDVPTIRPHKLSMTTMGCQSLVIVRLTRSDGICGIGEATTIGGLSYG 61
Query: 103 DQQTAMVKASEA---CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDA 159
+ + ++ +LK PA L ++ + G + G+ FA ++A+E AL+DA
Sbjct: 62 VESPEAISSAITHYLTPLLKGQPADNLNALTARMNGAIKGNTFA-----KSAIETALLDA 116
Query: 160 VAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAELASKYRKQGFTTLK 209
K++ +P+ L GG T +P++ AE +L ++ R + F K
Sbjct: 117 QGKALGLPVSALLGGALQT-----ALPVLWTLASGDTAKDIAEGEKLLAEGRHRAF---K 168
Query: 210 LKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
LK+G + L D+ RAI A+ +S +D N+ + + +L MGV L EQ
Sbjct: 169 LKIGARELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVD--LIEQ 226
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
PV D L +S + ++ ADE+ + D ++ + +K+AK G
Sbjct: 227 PVSAHDNAALVRLSQ----QIETAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGPN 282
Query: 328 A-LEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPV 383
+ L + V +A+G+ L G M+E + + H + L ++ PLLL +D V
Sbjct: 283 SVLALARVAQAAGIGLYGGTMLEGTVGTVASLHAWSTLPLQWGTEMFGPLLLKDDIV 339
>pdb|3DG3|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis
pdb|3DG6|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
pdb|3DG7|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Mucobacterium Smegmatis Complexed With Muconolactone
Length = 367
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/301 (24%), Positives = 138/301 (45%), Gaps = 14/301 (4%)
Query: 55 PLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
P ++P P A+ + E+V +R+ +G VG EAP P E QT +V E
Sbjct: 10 PFSIPYTKPLRFASGEVHAAEHVLVRVHTDDGIVGVAEAPPRPFTYGE-TQTGIVAVIEQ 68
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174
+PA+ ++ + +AA++MA+ DA+ +S+ + + + GG
Sbjct: 69 Y----FAPALIGLTLTEREVAHTRMARTVGNPTAKAAIDMAMWDALGQSLRLSVSEMLGG 124
Query: 175 VSNTITTDITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN-LKEDIEVLRAIRAVHPD 232
++ + + P + A + R+ G T K+KVG+ ++ D V+RA+R D
Sbjct: 125 YTDRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALRERFGD 184
Query: 233 S-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291
+ +D N G+ A E L + EM +LF + + D + L + + +
Sbjct: 185 AIELYVDGNRGWS---AAESLRAMREMADLDLLFAEELCPAD-DVLSRRRLVG--QLDMP 238
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 351
ADES + DV + V G A I+IK A+ G G+ + + GL++++G ++ +
Sbjct: 239 FIADESVPTPADVTREVLGGSATAISIKTARTGFTGSTRVHHLAEGLGLDMVMGNQIDGQ 298
Query: 352 L 352
+
Sbjct: 299 I 299
>pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
pdb|2ZC8|B Chain B, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
Length = 369
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 115/235 (48%), Gaps = 11/235 (4%)
Query: 142 FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAE-AAELASKY 200
F +A +EMA D AK++ PLW++ GGV + +++ I E + ++
Sbjct: 93 FRGNPMAKAVLEMAFFDLWAKALGRPLWQVLGGVRQAVEVGVSLGIQPSVEDTLRVVERH 152
Query: 201 RKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260
++G+ +KLK+ D EVL+A+R P+++ DAN Y + L++L E+ +
Sbjct: 153 LEEGYRRIKLKIKPGW--DYEVLKAVREAFPEATLTADANSAYSLANLAQ-LKRLDELRL 209
Query: 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320
+ EQP+ DD L H + + + DES + +K ++ V N+K
Sbjct: 210 DYI--EQPLAYDDL--LDHAK--LQRELSTPICLDESLTGAEKARKAIELGAGRVFNVKP 263
Query: 321 AKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT 374
A++G G +L + + ++G+ L +GGM+E + HL+ G K D+ +
Sbjct: 264 ARLGGHGESLRVHALAESAGIPLWMGGMLEAGVGRAHNLHLATLPGFTKPGDVSS 318
>pdb|2QDE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
pdb|2QDE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING FAMILY Protein From Azoarcus Sp. Ebn1
Length = 397
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 148/325 (45%), Gaps = 17/325 (5%)
Query: 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG---WGEAPVLPHVT 100
++ + + E P++ P+ + + L +++ V +++ G VG G+
Sbjct: 1 MSLKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGE 60
Query: 101 AEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAV 160
+D T+M+ A +VL + + G + L + A +A V+ AL D V
Sbjct: 61 TQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQA-----KATVDFALHDLV 115
Query: 161 AKSVSMPLWRLFGGVS-NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKED 219
K +P+++L GG + I + + P AE A ++GF +KLK G LK D
Sbjct: 116 GKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKAD 175
Query: 220 IEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
I ++ + RAV D +D N + +A+ + L + ++ + EQP+ D +G+
Sbjct: 176 IAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI--EQPLPAWDLDGMA 233
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRA 337
+ + K + ADES + L D+ I+ AD + IK K G+L A + + R
Sbjct: 234 RL----RGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARL 289
Query: 338 SGLNLMIGGMVETRLAMGFAGHLSA 362
+ L ++ G MV + L A HL A
Sbjct: 290 ANLPVICGCMVGSGLEASPAAHLLA 314
>pdb|2FKP|A Chain A, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|B Chain B, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|C Chain C, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2FKP|D Chain D, The Mutant G127c-T313c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 207
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLCTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLSC-LSNFRL 319
>pdb|2GGG|A Chain A, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|B Chain B, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|C Chain C, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGG|D Chain D, The Mutant A68c-D72c Of Deinococcus Radiodurans
N-Acylamino Acid Racemase
pdb|2GGH|A Chain A, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|B Chain B, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|C Chain C, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
pdb|2GGH|D Chain D, The Mutant A68c-D72c-Nlq Of Deinococcus Radiodurans
Nacylamino Acid Racemase
Length = 375
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 110/215 (51%), Gaps = 11/215 (5%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 207
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PL---AWDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361
+ + +V ++ G + GGM+E+ + HLS
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS 312
>pdb|2GGJ|A Chain A, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|B Chain B, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|C Chain C, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
pdb|2GGJ|D Chain D, The Mutant Y218c Of Deinococcus Radiodurans N-Acylamino
Acid Racemase
Length = 375
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 207
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTCI--EQ 221
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|1R0M|A Chain A, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|B Chain B, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|C Chain C, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1R0M|D Chain D, Structure Of Deinococcus Radiodurans N-Acylamino Acid
Racemase At 1.3 : Insights Into A Flexible Binding
Pocket And Evolution Of Enzymatic Activity
pdb|1XPY|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XPY|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|A Chain A, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|B Chain B, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|C Chain C, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
pdb|1XS2|D Chain D, Structural Basis For Catalytic Racemization And Substrate
Specificity Of An N-Acylamino Acid Racemase Homologue
From Deinococcus Radiodurans
Length = 375
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 207
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADEQATVDLVRRHVEQGYRR 166
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+KLK+ D++ +RA R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRATREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
+ + +V ++ G + GGM+E+ + HLS L F+
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLST-LSNFRL 319
>pdb|3QLD|A Chain A, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
pdb|3QLD|B Chain B, Structure Of Probable Mandelate Racemase
(Aalaa1draft_2112) From Alicyclobacillus Acidocaldarius
Length = 388
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 138/322 (42%), Gaps = 57/322 (17%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVK--- 110
L++PL P A + + + + +++ ++G GW E L P T E TA V
Sbjct: 11 LSLPLKFPXRTAHGHIREKQAILVQLVDADGIEGWSECVALAEPTYTEECTDTAWVXLVH 70
Query: 111 ------------ASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALID 158
AS+ +V + AL V G + AA+E A+ D
Sbjct: 71 HLVPRFARWLRAASQDQDVDPRTVCEALRDVRGNRXSV-------------AAIEXAVWD 117
Query: 159 AVAKSVSMPLWRLFGGVSNTITTDITIP-------IVSPAEAAELASKYRKQGFTTLKLK 211
A PL L GG + + T+ ++ +AA +QGF +KLK
Sbjct: 118 WYAARTGQPLVGLLGGGRDRVEVSATLGXSESLDVLIQSVDAAV------EQGFRRVKLK 171
Query: 212 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPV 269
+ D ++A+R +PD + DAN Y+P++A VL +L Y++ EQP+
Sbjct: 172 IAPG--RDRAAIKAVRLRYPDLAIAADANGSYRPEDA-PVLRQLDAYDLQ----FIEQPL 224
Query: 270 HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA- 328
DDW L + + V DES RS+ ++K + A V+N+K ++G GA
Sbjct: 225 PEDDWFDLAKL----QASLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFGAT 280
Query: 329 LEIIEVVRASGLNLMIGGMVET 350
L ++V +G +GG ET
Sbjct: 281 LRALDVAGEAGXAAWVGGXYET 302
>pdb|2GGI|A Chain A, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|B Chain B, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|C Chain C, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
pdb|2GGI|D Chain D, The Mutant E149c-A182c Of Deinococcus Radiodurans N-
Acylamino Acid Racemase
Length = 375
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 11/215 (5%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTT 207
RA VEMA D A+++ +PL L GG + +++ I + +A +L ++ +QG+
Sbjct: 107 RAMVEMAAWDLWARTLGVPLGTLLGGHKEQVEVGVSLGIQADCQATVDLVRRHVEQGYRR 166
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+KLK+ D++ +R R PD +DAN Y +A L +L E +T + EQ
Sbjct: 167 IKLKIKPGW--DVQPVRCTREAFPDIRLTVDANSAYTLADAGR-LRQLDEYDLTYI--EQ 221
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ W+ L + +A+ + + DES S D +K + VIN+K+A+VG
Sbjct: 222 PLA---WDDLVDHAELAR-RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA 277
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361
+ + +V ++ G + GGM+E+ + HLS
Sbjct: 278 ESRRVHDVAQSFGAPVWCGGMLESGIGRAHNIHLS 312
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 119/285 (41%), Gaps = 18/285 (6%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V + RPL +PL P+ + + I IE +G VG GE V P T
Sbjct: 4 VKISNVRVRPLVLPLKQPYHWSYGIRESFAVNLIEIEADDGTVGIGECTVAPDQTG---- 59
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGH-----QFASQLKVRAAVEMALIDAV 160
TA + A ++ SP + + GH + A+Q + + ++ A D
Sbjct: 60 TAAILYRLAKHLVGHSPHDVAPLIARIFHQEYLGHGANIXRAANQ--IFSGIDXAXWDLQ 117
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTLKLKVGKNLKED 219
K +P+ +L GG AE A A+ QG LKVG+ K D
Sbjct: 118 GKLAGLPVHQLLGGAHRKAVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEKLD 177
Query: 220 IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279
+E+ A+R D+ LDANEG+ +A+ KL + + EQP H
Sbjct: 178 LEITAAVRGEIGDARLRLDANEGWSVHDAINXCRKLEKYDIE--FIEQPTVSWSIPAXAH 235
Query: 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
V ++K G+ + AD++ +L DV +I + AD I I ++G
Sbjct: 236 V----REKVGIPIVADQAAFTLYDVYEICRQRAADXICIGPREIG 276
>pdb|2MUC|A Chain A, Muconate Cycloisomerase Variant F329i
pdb|2MUC|B Chain B, Muconate Cycloisomerase Variant F329i
Length = 373
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 6 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 65
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASQLKVRAAVEMALIDAVA 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA
Sbjct: 66 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA-----KSGIESALLDAQG 117
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
K + +P+ L GG V+ T+ + T + AEA + R + F KLK+G
Sbjct: 118 KRLGLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGA 172
Query: 215 N-LKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
N +++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R
Sbjct: 173 NPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRI 230
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 331
+ G ++ + + ADES S++D + A + +K+AK G A L
Sbjct: 231 NRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 286
Query: 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
++ A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 287 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELIGPLLLTEEIV 339
>pdb|1MUC|A Chain A, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
pdb|1MUC|B Chain B, Structure Of Muconate Lactonizing Enzyme At 1.85 Angstroms
Resolution
Length = 373
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 6 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 65
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASQLKVRAAVEMALIDAVA 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA
Sbjct: 66 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA-----KSGIESALLDAQG 117
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
K + +P+ L GG V+ T+ + T + AEA + R + F KLK+G
Sbjct: 118 KRLGLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGA 172
Query: 215 N-LKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
N +++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R
Sbjct: 173 NPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRI 230
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 331
+ G ++ + + ADES S++D + A + +K+AK G A L
Sbjct: 231 NRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 286
Query: 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
++ A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 287 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 339
>pdb|1BKH|A Chain A, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|B Chain B, Muconate Lactonizing Enzyme From Pseudomonas Putida
pdb|1BKH|C Chain C, Muconate Lactonizing Enzyme From Pseudomonas Putida
Length = 369
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASQLKVRAAVEMALIDAVA 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA
Sbjct: 63 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA-----KSGIESALLDAQG 114
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
K + +P+ L GG V+ T+ + T + AEA + R + F KLK+G
Sbjct: 115 KRLGLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGA 169
Query: 215 N-LKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
N +++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R
Sbjct: 170 NPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRI 227
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 331
+ G ++ + + ADES S++D + A + +K+AK G A L
Sbjct: 228 NRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 283
Query: 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
++ A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 284 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 336
>pdb|3MUC|A Chain A, Muconate Cycloisomerase Variant I54v
pdb|3MUC|B Chain B, Muconate Cycloisomerase Variant I54v
Length = 369
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 3 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTVGGLAYGYESPE 62
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASQLKVRAAVEMALIDAVA 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA
Sbjct: 63 GIKANIDAHL---APALIGLAADNINAAMLKLDKLAKGNTFA-----KSGIESALLDAQG 114
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
K + +P+ L GG V+ T+ + T + AEA + R + F KLK+G
Sbjct: 115 KRLGLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGA 169
Query: 215 N-LKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
N +++D++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R
Sbjct: 170 NPVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRI 227
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 331
+ G ++ + + ADES S++D + A + +K+AK G A L
Sbjct: 228 NRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 283
Query: 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
++ A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 284 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 336
>pdb|4H2H|A Chain A, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|B Chain B, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|C Chain C, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|D Chain D, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|E Chain E, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|F Chain F, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|G Chain G, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
pdb|4H2H|H Chain H, Crystal Structure Of An Enolase (Mandalate Racemase
Subgroup, Target Efi-502101) From Pelagibaca Bermudensis
Htcc2601, With Bound Mg And L-4-Hydroxyproline Betaine
(Betonicine)
Length = 376
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 139/277 (50%), Gaps = 23/277 (8%)
Query: 57 NVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEA 114
++P++ P+ IA+ + + ++I +G +GWGE PV P A+
Sbjct: 21 DLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVL 80
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174
L + A+ L + + LL GH +A ++A+++A+ D K + +P+ L GG
Sbjct: 81 ASGLAGAEALPL-PLHTRMDSLLCGHNYA-----KSALDIAVHDLWGKRLGVPVHELLGG 134
Query: 175 -VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD 232
+++++++ ++ ++ P EAA A + +++G++ L++K+G + ++ DIE +R +
Sbjct: 135 ALTDSVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRG 194
Query: 233 SSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFG 289
+ L D N G+ ++A+ + ++ P + EQP + +D E + + H A
Sbjct: 195 TGIALAADGNRGWTTRDALRFSRECPDI---PFVMEQPCNSFEDLEAIRPLCHHA----- 246
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 326
+ DE SL+ V +L D +K++++G L
Sbjct: 247 --LYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGL 281
>pdb|1NU5|A Chain A, Crystal Structure Of Pseudomonas Sp. P51 Chloromuconate
Lactonizing Enzyme
Length = 370
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 27/249 (10%)
Query: 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----- 188
A +L L +AA+++AL D A+++++ + L GG T +IPI
Sbjct: 86 ARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLAS 140
Query: 189 -----SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANE 241
A E+ R F K+K+G + +D+E +R+I +AV +S +D N+
Sbjct: 141 GDTARDIDSALEMIETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQ 197
Query: 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 301
G+ Q A + +L E GV L EQPV R ++ L ++ ++ GV++ ADES SL
Sbjct: 198 GWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSL 251
Query: 302 DDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ + + D ++KL + G+ L++ V A+G++ G M+++ + A H+
Sbjct: 252 SSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311
Query: 361 SAGLGCFKF 369
A L +
Sbjct: 312 YATLPSLPY 320
>pdb|1F9C|A Chain A, Crystal Structure Of Mle D178n Variant
pdb|1F9C|B Chain B, Crystal Structure Of Mle D178n Variant
Length = 372
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 166/353 (47%), Gaps = 36/353 (10%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++R + +++P I P +A + Q V +R+ S+G G GEA + + +
Sbjct: 5 IERIDAIIVDLPTIRPHKLAMHTMQQQTLVVLRVRCSDGVEGIGEATTIGGLAYGYESPE 64
Query: 108 MVKASEACEVLKESPAMALGSVFGVVAGLL------PGHQFASQLKVRAAVEMALIDAVA 161
+KA+ + +PA+ + + A +L G+ FA ++ +E AL+DA
Sbjct: 65 GIKANIDAHL---APALIGLAADNINAAMLKLDALAKGNTFA-----KSGIESALLDAQG 116
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK 214
K + +P+ L GG V+ T+ + T + AEA + R + F KLK+G
Sbjct: 117 KRLGLPVSELLGGRVRDSLEVAWTLASGDTARDI--AEARHMLEIRRHRVF---KLKIGA 171
Query: 215 N-LKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
N ++++++ + I+ DS+ + +D N+ + +A+ + L + G+ L EQP+ R
Sbjct: 172 NPVEQNLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRI 229
Query: 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEI 331
+ G ++ + + ADES S++D + A + +K+AK G A L
Sbjct: 230 NRGGQVRLNQ----RTPAPIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRT 285
Query: 332 IEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
++ A+G+ L G M+E + + H L + +L PLLL+E+ V
Sbjct: 286 AQIAEAAGIGLYGGTMLEGSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 338
>pdb|2PMQ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
pdb|2PMQ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Sp. Htcc2601
Length = 377
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/277 (23%), Positives = 136/277 (49%), Gaps = 23/277 (8%)
Query: 57 NVPLI-APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEA 114
++P++ P+ IA+ + + ++I +G +GWGE PV P A+
Sbjct: 14 DLPVVNGPYRIASGDVWSLTTTIVKIIAEDGTIGWGETCPVGPTYAEAHAGGALAALEVL 73
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG 174
L + A+ L + LL GH +A ++A+++A+ D K + +P+ L GG
Sbjct: 74 ASGLAGAEALPL-PLHTRXDSLLCGHNYA-----KSALDIAVHDLWGKRLGVPVHELLGG 127
Query: 175 -VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD 232
+++++++ ++ + P EAA A + +++G++ L++K+G + ++ DIE +R +
Sbjct: 128 ALTDSVSSYYSLGVXEPDEAARQALEKQREGYSRLQVKLGARPIEIDIEAIRKVWEAVRG 187
Query: 233 SSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFG 289
+ L D N G+ ++A+ + ++ P + EQP + +D E + + H A
Sbjct: 188 TGIALAADGNRGWTTRDALRFSRECPDI---PFVXEQPCNSFEDLEAIRPLCHHA----- 239
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 326
+ DE SL+ V +L D K++++G L
Sbjct: 240 --LYXDEDGTSLNTVITAAATSLVDGFGXKVSRIGGL 274
>pdb|1SJA|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJA|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Acetylmethionine
pdb|1SJB|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJB|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With O-Succinylbenzoic Acid
pdb|1SJC|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJC|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Methionine
pdb|1SJD|A Chain A, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|B Chain B, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|C Chain C, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
pdb|1SJD|D Chain D, X-Ray Structure Of O-Succinylbenzoate Synthase Complexed
With N-Succinyl Phenylglycine
Length = 368
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 34/313 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTA-- 107
E R + +PL+APF + E + +R G GWGE + P ++E A
Sbjct: 7 ELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEH 65
Query: 108 -----MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
++ A A E + + L + F GH+ A + A+EMA++DA +
Sbjct: 66 VLRHYLIPALLAAEDITAAKVTPLLAKF-------KGHRMA-----KGALEMAVLDAELR 113
Query: 163 SVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIE 221
+ G V +++ +++ I+ + ++ Y +G+ +KLK+ D+E
Sbjct: 114 AHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVE 171
Query: 222 VLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+RA+R D + +DAN Y +A + L +L G+ +L EQP+ +D LGH
Sbjct: 172 PVRAVRERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDV--LGH- 225
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASG 339
+ +A+ + + DES S +K ++NIK +VG L A + +V A G
Sbjct: 226 AELAR-RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHG 284
Query: 340 LNLMIGGMVETRL 352
+ + GGM+ET L
Sbjct: 285 IPVWCGGMIETGL 297
>pdb|4GGB|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Disordered Loops
pdb|4HPN|A Chain A, Crystal Structure Of A Proposed Galactarolactone
Cycloisomerase From Agrobacterium Tumefaciens, Target
Efi-500704, With Bound Ca, Ordered Loops
Length = 378
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 60 LIAPFTIATSRLDQVENVAIRIELSNGCVGWGE--APVLPHVTAEDQQTAMVKASEACEV 117
L PF A+ R D+ +V + IE +G VGWGE P P+ A+V+A +
Sbjct: 15 LDTPFESASMRFDRRAHVLVEIECDDGTVGWGECLGPARPN-------AAVVQAYSGW-L 66
Query: 118 LKESPAMALGSVFGVVAGLLPGH-QFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-- 174
+ + P ++ V+ L Q L + +++AL D K + L GG
Sbjct: 67 IGQDPRQTE-KIWAVLYNALRDQGQRGLSLTALSGIDIALWDIKGKHYGASISMLLGGRW 125
Query: 175 -------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR 227
+ + D + VS A+E+A + R +GF K+K+G ++ED+ V+ A+R
Sbjct: 126 RESVRAYATGSFKRD-NVDRVSD-NASEMAER-RAEGFHACKIKIGFGVEEDLRVIAAVR 182
Query: 228 -AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 269
A+ PD ++DAN GY EA+ + ++ G+ FE+PV
Sbjct: 183 EAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGID--WFEEPV 223
>pdb|4IZG|A Chain A, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
pdb|4IZG|B Chain B, Crystal Structure Of An Enolase (mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (target
Nysgrc-012907) With Bound Cis-4oh-d-proline Betaine
(product)
Length = 391
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 19/270 (7%)
Query: 62 APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKE 120
P+TIA+S + ++ ++I +G GWGE PV P A +E L
Sbjct: 40 GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEMAPGLIG 99
Query: 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTI 179
+ + + + GLL GH +A +AA+++A D + K + + L GGV + +
Sbjct: 100 ANPLQPLVLRRRMDGLLCGHNYA-----KAAIDIAAYDLMGKHYGVRVADLLGGVAAERV 154
Query: 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAI--RAVHPDSSFI 236
+ I P E A +A++ +GF L++K+ G+ ++ DIE +R + R +
Sbjct: 155 PSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLA 214
Query: 237 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296
+D N ++A+ + + E+ P + EQP + L ++ I + + + DE
Sbjct: 215 VDGNRSLPSRDALRLSRECPEI---PFVLEQPCNT-----LEEIAAI-RGRVQHGIYLDE 265
Query: 297 SCRSLDDVKKIVKGNLADVINIKLAKVGVL 326
S L V + L D +KL ++G L
Sbjct: 266 SGEDLSTVIRAAGQGLCDGFGMKLTRIGGL 295
>pdb|4H83|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
pdb|4H83|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME (Efi Target:502127)
Length = 388
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 127/299 (42%), Gaps = 34/299 (11%)
Query: 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
Q + + R E P+ PL F + + + R+ G +G EA T
Sbjct: 16 QAHGLTITRIETIPMVAPLAREFRGSHYHMTHRATIVTRVHTDAGIIG--EA-----YTG 68
Query: 102 EDQQTAM----VKASEACEVLKESPAMAL----GSVFGVVAGLLPGHQFASQLKVRAAVE 153
++ +T + E L AMA+ S + V +L + L AAV
Sbjct: 69 DEHETMFDIDRIIHEELAPTLIGQDAMAIERLWDSGYKVTFDILRDRRLG--LVALAAVN 126
Query: 154 MALIDAVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTT 207
A+ DAV K++ MPLW+L+GG N + I I P+ S A+ Y++ G
Sbjct: 127 TAIWDAVGKALKMPLWKLWGGYRNELPM-IAIGGYYGEPLGSIADEMH---NYQELGLAG 182
Query: 208 LKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLF 265
+K KVG + ED + A R D I +DAN+GYKP AV++ ++ ++ + F
Sbjct: 183 VKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WF 240
Query: 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
E+PV +W + + V V A ++ S + +++ DV N + G
Sbjct: 241 EEPV---EWHNDKRSMRDVRYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSG 296
>pdb|4GFI|A Chain A, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|B Chain B, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|C Chain C, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
pdb|4GFI|D Chain D, Crystal Structure Of Efi-502318, An Enolase Family Member
From Agrobacterium Tumefaciens With Homology To
Dipeptide Epimerases (Bound Sodium, L-Ala-L-Glu With
Ordered Loop)
Length = 329
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 113/235 (48%), Gaps = 19/235 (8%)
Query: 149 RAAVEMALIDAVAK-SVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTT 207
R AV+ AL D AK S ++ G + + T TI + P A A G
Sbjct: 91 RNAVDCALWDLEAKMSGKRAAEQVLGQPAQPLVTAYTISLADPDTMA--AKTAENAGRPL 148
Query: 208 LKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
LK+K G +D LRA+RA P++ I+DANEG+ L+ E+ ++ L EQ
Sbjct: 149 LKIKTGT--ADDEARLRAVRAAAPEARIIIDANEGWNDDNIEYYLKLAAELKIS--LIEQ 204
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
P+ G + +A+ + V + ADES S +D+ + + D INIKL K G L
Sbjct: 205 PLP------AGKDAMLARIEHPVLICADESVHSTEDLAGLR--DRYDAINIKLDKTGGLT 256
Query: 328 -ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
AL + G +M+G M+ T L M A ++ G F DLD PLLL+ED
Sbjct: 257 EALVMKAEAERLGFTIMVGCMLGTSLGMAPAVLVAQGTA---FADLDGPLLLAED 308
>pdb|3MY9|A Chain A, Crystal Structure Of A Muconate Cycloisomerase From
Azorhizobium Caulinodans
Length = 377
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 134/306 (43%), Gaps = 26/306 (8%)
Query: 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGV 132
V+ V + + ++G VGWGEA T + ++ +P + +
Sbjct: 34 SVKRVLLEVTSADGIVGWGEAAPWEVFTGTPEAAFSALDIYLRPLILGAPIKRVRELMAR 93
Query: 133 VAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA 191
+ +L GH A +AAVEMAL+D + K+ + + L GG V + I ++ I P
Sbjct: 94 MDKMLVGHGEA-----KAAVEMALLDILGKATGLSVADLLGGRVRDRIP--LSFSIADPD 146
Query: 192 EAAELASKYRKQ---GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQ 246
A+L + R G T K+K G K E++ +L +R + LD N+ P
Sbjct: 147 FDADL-ERMRAMVPAGHTVFKMKTGVKPHAEELRILETMRGEFGERIDLRLDFNQALTPF 205
Query: 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306
A+++L + P EQPV R + + + + ADESC D+ +
Sbjct: 206 GAMKILRDVD--AFRPTFIEQPVPRRHLDAMAGFAA----ALDTPILADESCFDAVDLME 259
Query: 307 IVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG-- 363
+V+ AD I++K+ K G++ A ++ + +GL G + E +A+ L A
Sbjct: 260 VVRRQAADAISVKIMKCGGLMKAQSLMAIADTAGLPGYGGTLWEGGIALAAGTQLIAATP 319
Query: 364 ---LGC 366
LGC
Sbjct: 320 GISLGC 325
>pdb|4A6G|A Chain A, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|B Chain B, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|C Chain C, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
pdb|4A6G|D Chain D, N-Acyl Amino Acid Racemase From Amycalotopsis Sp.
Ts-1-60: G291d-F323y Mutant In Complex With N-Acetyl
Methionine
Length = 368
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/313 (26%), Positives = 143/313 (45%), Gaps = 34/313 (10%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTA-- 107
E R + +PL+APF + E + +R G GWGE + P ++E A
Sbjct: 7 ELRRVQMPLVAPFRTSFGTQSVRELLLLRAVTPAG-EGWGECVTMAGPLYSSEYNDGAEH 65
Query: 108 -----MVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
++ A A E + + L + F GH+ A + A+EMA++DA +
Sbjct: 66 VLRHYLIPALLAAEDITAAKVTPLLAKF-------KGHRMA-----KGALEMAVLDAELR 113
Query: 163 SVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFTTLKLKVGKNLKEDIE 221
+ G V +++ +++ I+ + ++ Y +G+ +KLK+ D+E
Sbjct: 114 AHERSFAAELGSVRDSVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIEPGW--DVE 171
Query: 222 VLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
+RA+R D + +DAN Y +A + L +L G+ +L EQP+ +D LGH
Sbjct: 172 PVRAVRERFGDDVLLQVDANTAYTLGDAPQ-LARLDPFGL--LLIEQPLEEEDV--LGH- 225
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASG 339
+ +A+ + + DES S +K ++NIK +V G L A + +V A G
Sbjct: 226 AELAR-RIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCAAHG 284
Query: 340 LNLMIGGMVETRL 352
+ + G M+ET L
Sbjct: 285 IPVWCGDMIETGL 297
>pdb|4E8G|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
pdb|4E8G|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup) From Paracococus Denitrificans Pd1222 (Target
Nysgrc-012907) With Bound Mg
Length = 391
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 120/270 (44%), Gaps = 19/270 (7%)
Query: 62 APFTIATSRLDQVENVAIRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKE 120
P+TIA+S + ++ ++I +G GWGE PV P A +E L
Sbjct: 40 GPYTIASSTVWSLQTTLVKIVADSGLAGWGETCPVGPTYAPSHALGARAALAEXAPGLIG 99
Query: 121 SPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTI 179
+ + + GLL GH +A +AA+++A D K + + L GGV + +
Sbjct: 100 ANPLQPLVLRRRXDGLLCGHNYA-----KAAIDIAAYDLXGKHYGVRVADLLGGVAAERV 154
Query: 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAI--RAVHPDSSFI 236
+ I P E A +A++ +GF L++K+ G+ ++ DIE +R + R +
Sbjct: 155 PSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGRPVEIDIETVRKVWERIRGTGTRLA 214
Query: 237 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296
+D N ++A+ + + E+ P + EQP + L ++ I + + + DE
Sbjct: 215 VDGNRSLPSRDALRLSRECPEI---PFVLEQPCNT-----LEEIAAI-RGRVQHGIYLDE 265
Query: 297 SCRSLDDVKKIVKGNLADVINIKLAKVGVL 326
S L V + L D KL ++G L
Sbjct: 266 SGEDLSTVIRAAGQGLCDGFGXKLTRIGGL 295
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 126/308 (40%), Gaps = 34/308 (11%)
Query: 35 FSFKNLTQT---FTVDVQRAENRPLN--VPLIAPFTIATSRLDQVENVAIRIELSNGCVG 89
S K TQ + + + PL+ +P T+ + + + IR+E S G G
Sbjct: 25 LSIKRFTQNSRRHDMKITKINAIPLSYRLPEGKTVTMGVGSTIKRDAIIIRVETSEGITG 84
Query: 90 WGEA---------PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGH 140
+GEA L H T M KA++ + M L S GL G
Sbjct: 85 YGEAHPGRSPGAITSLIHNTIAPMLIGM-KATDCVGAWQRVHRMQLSS-----HGLGAGA 138
Query: 141 QFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITT---DITIPIVSPAEAAELA 197
A + ++MAL D K+ +MPL+ L GG I I + AE A
Sbjct: 139 ALAI-----SGIDMALWDIRGKAANMPLYELLGGSKRRIPAYAGGIALGYQPKESLAEEA 193
Query: 198 SKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLY 256
+Y +G+ LKL++G + DIE +R +R V D IL DAN Y +A VL L
Sbjct: 194 QEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLA 253
Query: 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
E + E+P +D+ V+ I V +AA E+ + + +++ V
Sbjct: 254 E--IQAGWLEEPFACNDFASYREVAKITPL---VPIAAGENHYTRFEFGQMLDAGAVQVW 308
Query: 317 NIKLAKVG 324
L+K G
Sbjct: 309 QPDLSKCG 316
>pdb|3I6T|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp.
pdb|3I6T|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Jannaschia Sp
Length = 381
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/357 (28%), Positives = 156/357 (43%), Gaps = 46/357 (12%)
Query: 60 LIAPFTI------ATSRLDQ--------VENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
+IA FT+ T+R D VE V +R++ +G VG+GEA P V
Sbjct: 9 IIAGFTLWHLSLPVTARRDHGIGSVAGAVEVVVLRLQADSGAVGYGEAS--PWVVF---- 62
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ--FASQLKVRAAVEMALIDAVAKS 163
T V+A+ A P + LG G A ++ + A + +AA++ AL D A+
Sbjct: 63 TGSVEATYAALDRYLRP-LVLGRAVGDHAAIMEDARAAVAHCTEAKAALDTALYDLRARI 121
Query: 164 VSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG-KNLKEDI 220
+P+W L GG ++ I P +LA R Q +KLK G K+ D+
Sbjct: 122 AGVPVWALLGGRCRD-RIPLSCSIADPDFDKDLALMQRLQDDDVRIIKLKTGFKDHAFDM 180
Query: 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
L +RA P +D N+G A+ + + P EQPV + GL +
Sbjct: 181 MRLERLRADFPAFDIRVDYNQGLHHDVALARVRDVATF--KPTFIEQPV-KAHLRGL--M 235
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 339
+ I +D V + ADES +D+ + +AD ++IK+ K G L A + + A G
Sbjct: 236 ARI-RDAVDVPLLADESIFGPEDMAE--HPEIADGVSIKIMKSGGLTRAQTVARMAAARG 292
Query: 340 LNLMIGGMVETRLAMGFAGHLSAG-----LGCFKFID----LDTPLLLSEDPVLDGY 387
L+ G M E LA H+ A LGC +F L +L + PV DG+
Sbjct: 293 LSAYGGDMFEAGLAHLAGAHMIAATPEITLGC-EFYQATYFLCDDILAAPFPVADGH 348
>pdb|3H12|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
pdb|3H12|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50
Length = 397
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 20/185 (10%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSPAEAAELASKY 200
+ V++AL D ++++ P+++L GG +++I D+T P +AA+ + +
Sbjct: 108 SGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----PDQAADELAGW 162
Query: 201 RKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
+QGFT KLKVG+ ++D LRA+R V D ++DAN+ +A+ +L L E G
Sbjct: 163 VEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG 222
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319
FE+P+ DD E GH A+ V +A E+ + + ++ + DV+
Sbjct: 223 C--YWFEEPLSIDDIE--GHRILRAQGT-PVRIATGENLYTRNAFNDYIRNDAIDVLQAD 277
Query: 320 LAKVG 324
++ G
Sbjct: 278 ASRAG 282
>pdb|3OZM|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZM|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg, M-Xylarate
And L-Lyxarate
pdb|3OZY|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
pdb|3OZY|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Bordetella Bronchiseptica Complexed With Mg And
M-Xylarate
Length = 389
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 94/187 (50%), Gaps = 24/187 (12%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSPAEAAELASKY 200
+ V++AL D ++++ P+++L GG +++I D+T P +AA+ + +
Sbjct: 108 SGVDIALWDLKGRAMNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----PDQAADELAGW 162
Query: 201 RKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
+QGFT KLKVG+ ++D LRA+R V D ++DAN+ +A+ +L L E G
Sbjct: 163 VEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAG 222
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVIN 317
FE+P+ DD EG H G V +A E+ + + ++ + DV+
Sbjct: 223 C--YWFEEPLSIDDIEG-----HRILRAQGTPVRIATGENLYTRNAFNDYIRNDAIDVLQ 275
Query: 318 IKLAKVG 324
++ G
Sbjct: 276 ADASRAG 282
>pdb|2CHR|A Chain A, A Re-Evaluation Of The Crystal Structure Of Chloromuconate
Cycloisomerase
Length = 370
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 28/277 (10%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAAELAS 198
+AAVEMAL+D A+++ + + L GG + IPI A E+
Sbjct: 101 KAAVEMALLDLKARALGVSIAELLGGPLRS-----AIPIAWTLASGDTKRDLDSAVEMIE 155
Query: 199 KYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLY 256
+ R F K+K+G ++ ++D+ + A+ +++ +D N+ + Q A + +L
Sbjct: 156 RRRHNRF---KVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELE 212
Query: 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316
+GV L EQPV R++ + L +S D V++ ADES +L + + DV
Sbjct: 213 ALGVE--LIEQPVGRENTQALRRLS----DNNRVAIMADESLSTLASAFDLARDRSVDVF 266
Query: 317 NIKLAKVGVLGALE-IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDT 374
++KL +G + A + I V ASG+ G M+++ + A L + + F +L
Sbjct: 267 SLKLCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIG 326
Query: 375 PLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411
P +L++ + E+ + GHG L D +
Sbjct: 327 PFVLADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363
>pdb|3I6E|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi.
pdb|3I6E|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Ruegeria Pomeroyi
Length = 385
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 16/229 (6%)
Query: 147 KVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA--SKYRKQG 204
+ +AA++ AL+D + ++P+W L GG T ++ I +P A++A + R G
Sbjct: 105 EAKAALDSALLDLAGRISNLPVWALLGGKCRD-TIPLSCSIANPDFDADIALMERLRADG 163
Query: 205 FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263
+KLK G ++ DI L I P+ +D N+G + EAV + + + P
Sbjct: 164 VGLIKLKTGFRDHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQF--QPD 221
Query: 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323
EQPV +E + + + V + ADES +D+ + + D ++IK+ K
Sbjct: 222 FIEQPVRAHHFELMARLRGLTD----VPLLADESVYGPEDMVRAAHEGICDGVSIKIMKS 277
Query: 324 GVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG-----LGC 366
G L A + + A GL G M E LA H+ A LGC
Sbjct: 278 GGLTRAQTVARIAAAHGLMAYGGDMFEAGLAHLAGTHMIAATPEITLGC 326
>pdb|1WUE|A Chain A, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
pdb|1WUE|B Chain B, Crystal Structure Of Protein Gi:29375081, Unknown Member
Of Enolase Superfamily From Enterococcus Faecalis V583
Length = 386
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 44/322 (13%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAE- 102
+++Q E + +PL PF + RL++ I G G+GE P E
Sbjct: 20 MNIQSIETYQVRLPLKTPFVTSYGRLEEKAFDLFVITDEQGNQGFGELVAFEQPDYVQET 79
Query: 103 --------DQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEM 154
Q + +EA E +E + ++F V G G +AA+E
Sbjct: 80 LVTERFIIQQHLIPLLLTEAIEQPQE-----VSTIFEEVKGHWMG---------KAALET 125
Query: 155 ALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYR---KQGFTTLKLK 211
A+ D AK L FG I I++ I + +L + + ++G+ +KLK
Sbjct: 126 AIWDLYAKRQQKSLTEFFGPTRRKIPVGISLGIQE--DLPQLLKQVQLAVEKGYQRVKLK 183
Query: 212 VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMGVTPVLFEQPV 269
+ D+E + IR P+ ++DAN Y + + L++L Y++ + EQP
Sbjct: 184 IRPGY--DVEPVALIRQHFPNLPLMVDANSAYTLADLPQ-LQRLDHYQLA----MIEQPF 236
Query: 270 HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGA 328
DD+ L H + + + DE+ RSL D + + IN+K+ +V G+ A
Sbjct: 237 AADDF--LDHAQ--LQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIHEA 292
Query: 329 LEIIEVVRASGLNLMIGGMVET 350
L+I + + L + +GGM E+
Sbjct: 293 LKIAAFCQENDLLVWLGGMFES 314
>pdb|3NO1|A Chain A, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|B Chain B, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|C Chain C, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|D Chain D, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|E Chain E, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
pdb|3NO1|F Chain F, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From A Marine Actinobacterium In
Complex With Magnesium
Length = 398
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 76/299 (25%), Positives = 122/299 (40%), Gaps = 34/299 (11%)
Query: 42 QTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA 101
Q + + R E P PL F + + R+ G +G EA T
Sbjct: 18 QAHGLTITRIETIPXVAPLAREFRGSHYHXTHRATIVTRVHTDAGIIG--EA-----YTG 70
Query: 102 EDQQTAM----VKASEACEVLKESPAMAL----GSVFGVVAGLLPGHQFASQLKVRAAVE 153
++ +T + E L A A+ S + V +L + L AAV
Sbjct: 71 DEHETXFDIDRIIHEELAPTLIGQDAXAIERLWDSGYKVTFDILRDRRLG--LVALAAVN 128
Query: 154 MALIDAVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQGFTT 207
A+ DAV K++ PLW+L+GG N + I I P+ S A+ Y++ G
Sbjct: 129 TAIWDAVGKALKXPLWKLWGGYRNELPX-IAIGGYYGEPLGSIADEXH---NYQELGLAG 184
Query: 208 LKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLF 265
+K KVG + ED + A R D I +DAN+GYKP AV++ ++ ++ + F
Sbjct: 185 VKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR--WF 242
Query: 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
E+PV +W + + V V A ++ S + + + DV N + G
Sbjct: 243 EEPV---EWHNDKRSXRDVRYQGSVPVCAGQTEFSASGCRDLXETGAIDVCNFDSSWSG 298
>pdb|3MSY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
pdb|3MSY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From A Marine Actinobacterium
Length = 379
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITI------PIVSPAEAAELASKYRKQ 203
AAV A+ DAV K++ PLW+L+GG N + I I P+ S A+ Y++
Sbjct: 106 AAVNTAIWDAVGKALKXPLWKLWGGYRNELPX-IAIGGYYGEPLGSIADEXH---NYQEL 161
Query: 204 GFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVT 261
G +K KVG + ED + A R D I +DAN+GYKP AV++ ++ ++ +
Sbjct: 162 GLAGVKFKVGGLSAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIR 221
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321
FE+PV +W + + V V A ++ S + + + DV N +
Sbjct: 222 --WFEEPV---EWHNDKRSXRDVRYQGSVPVCAGQTEFSASGCRDLXETGAIDVCNFDSS 276
Query: 322 KVG 324
G
Sbjct: 277 WSG 279
>pdb|3OP2|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
pdb|3OP2|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Bordetella Bronchiseptica Rb50 Complexed With
2-OxoglutaratePHOSPHATE
Length = 397
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 20/185 (10%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTDITIPIVSPAEAAELASKY 200
+ V++AL D ++ + P+++L GG +++I D+T P +AA+ + +
Sbjct: 108 SGVDIALWDLKGRAXNQPIYQLLGGKFHTRGVRAYASSIYWDLT-----PDQAADELAGW 162
Query: 201 RKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
+QGFT KLKVG+ ++D LRA R V D ++DAN+ +A+ L L E G
Sbjct: 163 VEQGFTAAKLKVGRAPRKDAANLRAXRQRVGADVEILVDANQSLGRHDALAXLRILDEAG 222
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319
FE+P+ DD E GH A+ V +A E+ + + ++ + DV+
Sbjct: 223 C--YWFEEPLSIDDIE--GHRILRAQGT-PVRIATGENLYTRNAFNDYIRNDAIDVLQAD 277
Query: 320 LAKVG 324
++ G
Sbjct: 278 ASRAG 282
>pdb|3UGV|A Chain A, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|B Chain B, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|C Chain C, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|D Chain D, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|E Chain E, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|F Chain F, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|G Chain G, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
pdb|3UGV|H Chain H, Crystal Structure Of An Enolase From Alpha Pretobacterium
Bal199 (Efi Target Efi-501650) With Bound Mg
Length = 390
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 100/202 (49%), Gaps = 15/202 (7%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD------ITIPIVSPAEAAELASKYRKQ 203
+ V+MA+ DA+A++ +MPL L GG ++ + P AEA EL ++ +
Sbjct: 129 SGVDMAVWDALARAANMPLCTLLGGTPGSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGT 188
Query: 204 GFTTLKLKVGKNLKE-DIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261
GF LKL++G++ DIE A+ AV D++ ++D N+G EA+ ++ ++G+
Sbjct: 189 GFKGLKLRMGRDDPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLE 248
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321
E+PV D+++G + H K + E+ ++ + ++ D++
Sbjct: 249 --WIEEPVVYDNFDGYAQLRHDLKTPLMIG----ENFYGPREMHQALQAGACDLVMPDFM 302
Query: 322 KV-GVLGALEIIEVVRASGLNL 342
++ GV G + V A G+ +
Sbjct: 303 RIGGVSGWMRAAGVAGAWGIPM 324
>pdb|2OZ8|A Chain A, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
pdb|2OZ8|B Chain B, Crystal Structure Of Putative Mandelate Racemase From
Mesorhizobium Loti
Length = 389
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 22/271 (8%)
Query: 70 RLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
R D V A+ + +G VG G L + + Q+ V E LK + A+AL
Sbjct: 27 RADDVNVAALELVSESGEVGLGFIQTLFNPLPDQQEIESVFEHEVWPSLKGNRAIALVHR 86
Query: 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTI---TTDITIP 186
G G+Q A L AV++AL D AK +PL L G N + + +
Sbjct: 87 VNRPRG---GNQRAYSLPFHEAVQVALWDLAAKEAGLPLHVLLGSRRNRVKAYASGLDFH 143
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYK 244
+ A + L S G++ K+KVG ++ D+ L ++ P S ++D NE +
Sbjct: 144 LDDDAFVS-LFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWT 202
Query: 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304
+EA+ L + E G + E P+ R D +GL + H V+ S LD
Sbjct: 203 SKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTLRH------AVTWTQINSGEYLDLQ 256
Query: 305 KK--IVKGNLADVINIK-----LAKVGVLGA 328
K +++ + AD++N+ + ++G L A
Sbjct: 257 GKRLLLEAHAADILNVHGQVTDVMRIGWLAA 287
>pdb|2RDX|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
pdb|2RDX|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Roseovarius Nubinhibens Ism
Length = 379
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 16/193 (8%)
Query: 136 LLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAA 194
L+ GH +A +A + A D + ++ P+W L GG + + P S AE
Sbjct: 96 LVQGHGYA-----KAPFDAAFWDILGQATGQPVWMLLGGKLCDGAPMYRVAPQRSEAETR 150
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRA-IRAVHPDSSFILDANEGYKPQEAVEVLE 253
+++R G+ ++KVG + + DI+ +RA + + P + DAN+G++ A+ +
Sbjct: 151 AELARHRAAGYRQFQIKVGADWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLAR 210
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
++ + EQP +E V +A + DE L ++IV A
Sbjct: 211 ATRDLD---YILEQPCR--SYEECQQVRRVADQPMKL----DECVTGLHMAQRIVADRGA 261
Query: 314 DVINIKLAKVGVL 326
++ +K++ +G L
Sbjct: 262 EICCLKISNLGGL 274
>pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
pdb|3T8Q|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
Length = 370
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 119/278 (42%), Gaps = 30/278 (10%)
Query: 79 IRIELSNGCVGWGE-APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLL 137
+++ +G GWG+ AP +TA+ V + PA+ + + ++
Sbjct: 19 VKVTTDSGETGWGQVAPYYADITAQ------VLHRQVAPYALGKPALDIDYLVDIIPE-- 70
Query: 138 PGHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLFGGVSNTIT---TDITIPIVSPAE 192
H+F RA ++ AL D + P+ L GG T+ + + I E
Sbjct: 71 KEHKFPGSYLRRALGGLDTALWDLRGRLEGKPVCELIGGTPGTVRAYGSSMKRDITPKDE 130
Query: 193 AAELASKYRKQGFTTLKLKVGKNLKEDI--------EVLRAIRAVHPDS-SFILDANEGY 243
AA L+ + GF K ++G E++ IRA DS + ++DAN Y
Sbjct: 131 AARLSRLRDRFGFDAFKFRIGAECGRGQDEWPGRTEEIVPTIRAAMDDSVALLVDANSCY 190
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
P++A+EV + L + G++ +E+P ++E V+ + + V E L +
Sbjct: 191 GPEQAIEVGKMLEQNGIS--HYEEPCPYWEYEQTQQVT----NALSIDVTGGEQDCELQN 244
Query: 304 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 340
+++++ D++ + + G+ L + E+ +GL
Sbjct: 245 WRRMIEMKAVDIVQPDICYLGGITRTLRVAEMAHKAGL 282
>pdb|4A35|A Chain A, Crystal Structure Of Human Mitochondrial Enolase
Superfamily Member 1 (Enosf1)
Length = 441
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
+L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN+ + EAVE +
Sbjct: 207 QLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMS 266
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 311
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 267 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 321
Query: 312 LADVINIKLAKVG 324
+ I ++G
Sbjct: 322 ALQFLQIDSCRLG 334
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 314 DVINIKLAKVG 324
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|3CT2|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3CT2|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Pseudomonas Fluorescens
pdb|3DGB|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
pdb|3FJ4|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Pseudomonas Fluorescens Complexed With Muconolactone
Length = 382
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 30/348 (8%)
Query: 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTA 107
++ E +++P I P +A + V IR+ ++G G GE+ + + ++
Sbjct: 8 IESIETIIVDLPTIRPHKLAMHTMQNQTLVLIRLRCADGIEGLGESTTIGGLAYGNESPD 67
Query: 108 MVKASE---ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSV 164
+K + +L A + + + + G+ FA ++ +E AL+DA K +
Sbjct: 68 SIKTNIDRFVAPLLIGQDASNINAAMLRLEQSIRGNTFA-----KSGIESALLDAQGKRL 122
Query: 165 SMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NL 216
+P+ L GG V+ T+ + T + AEA ++ R + F KLK+G +
Sbjct: 123 GLPVSELLGGRVRDALPVAWTLASGDTAKDI--AEAQKMLDLRRHRIF---KLKIGAGEV 177
Query: 217 KEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWE 275
D+ + AI+ DS+ + +D N+ + A+ L G+ L EQP+ R++
Sbjct: 178 DRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGID--LIEQPISRNNRA 235
Query: 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEV 334
G+ ++ + + ADES ++D + + A V +K+AK G A L +
Sbjct: 236 GMVRLNASSP----APIMADESIECVEDAFNLAREGAASVFALKIAKNGGPRATLRTAAI 291
Query: 335 VRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 381
A+G+ L G M+E + + H L + +L PLLL+ED
Sbjct: 292 AEAAGIGLYGGTMLEGGIGTLASAHAFLTLNKLSWDTELFGPLLLTED 339
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 6/131 (4%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 314 DVINIKLAKVG 324
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 118/291 (40%), Gaps = 56/291 (19%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKE--SPAMALGSVFGVVAGL 136
+R+ +G GWG Q + A C VL +P M LG + L
Sbjct: 39 VRVTTQDGAQGWG-------------QVSTYHADITCTVLHRQVAPWM-LGQDITDLDDL 84
Query: 137 LP-----GHQFASQLKVRA--AVEMALIDAVAKSVSMPLWRLFGGV-------SNTITTD 182
L H+F RA V+ A+ D K P+ + GG ++++ D
Sbjct: 85 LDIVTEREHKFPGSYLRRAMAGVDTAIWDLRGKQQGKPVAEVLGGTPGLIRAYASSMKRD 144
Query: 183 ITIPIVSPAEAAELASKYRK-QGFTTLKLK----VGKN-------LKEDIEVLRAIRAVH 230
IT P + AE + R QGFT K++ VG+N +E I +R R +
Sbjct: 145 IT-----PRDEAERLKRLRDTQGFTAFKVRAGAEVGRNRDEWPGRTEEIIPTMR--RELG 197
Query: 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290
D ++DAN Y P A+EV L + G FE+P WE L + D +
Sbjct: 198 DDVDLLIDANSCYTPDRAIEVGHMLQDHGF--CHFEEPCPY--WE-LAQTKQVT-DALDI 251
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 340
V E L ++++ D++ + + G+ L ++E+ RA+GL
Sbjct: 252 DVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGICRTLRVVEMARAAGL 302
>pdb|4H1Z|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|E Chain E, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|F Chain F, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|G Chain G, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
pdb|4H1Z|H Chain H, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti, Open Loop Conformation (Target Efi-502104)
Length = 412
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 123/267 (46%), Gaps = 25/267 (9%)
Query: 75 ENVAIRIELSNGCVGWGEAP--VLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGV 132
+V +RIE NG VGWGE V P T E ++ A + P A ++
Sbjct: 74 RSVLVRIETENGAVGWGETYGLVAPRATME-----IIDDLLADFTIGRDPFDA-AAIHDD 127
Query: 133 VAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IPIV 188
+ L+ G+ + AA+++AL D K +P+ +L GG + I I+ +P
Sbjct: 128 LYDLMRVRGYTGGFYVDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLPED 187
Query: 189 SPAEAAELASKYRKQGFTTLKLK---VGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+ A+ AELA+ ++ +GF++ K + +++E+LR + P D + +
Sbjct: 188 TRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEMEILR--ERLGPAVRIACDMHWAHTA 245
Query: 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-V 304
EAV +++ + G+ E PV +D +GL V+ ++A E R++ D V
Sbjct: 246 SEAVALIKAMEPHGLW--FAEAPVRTEDIDGLARVA----ASVSTAIAVGEEWRTVHDMV 299
Query: 305 KKIVKGNLADVINIKLAKVGVLGALEI 331
++ + LA ++ ++ G+ + I
Sbjct: 300 PRVARRALA-IVQPEMGHKGITQFMRI 325
>pdb|2OVL|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|2OVL|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2)
pdb|3CK5|A Chain A, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|B Chain B, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|C Chain C, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
pdb|3CK5|D Chain D, Crystal Structure Of A Racemase From Streptomyces
Coelicolor A3(2) With Bound Magnesium
Length = 371
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 126/293 (43%), Gaps = 42/293 (14%)
Query: 48 VQRAENRPLNVPLIAPFTIAT-SRLDQVENVAIRIELSNGCVGWGEAPVLPHVTA----- 101
++R +PL T +T E + +RIE S+G G G + H A
Sbjct: 4 IERVRTDLYRIPLPTRLTDSTHGAXXDFELITVRIEDSDGATGLGYTYTVNHGGAAVATX 63
Query: 102 --EDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALID 158
+D + ++ A +E E + +S L AG GH ++ +AV++AL D
Sbjct: 64 VDKDLRGCLLGADAEQIEKIWQSXWWRLH-----YAGR-GGHATSAI----SAVDIALWD 113
Query: 159 AVAKSVSMPLWRLFGGVSNTITT-----DITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213
PLW+LFGG + D+ +P+ A+ A ++ GF +K KVG
Sbjct: 114 LKGIRARTPLWKLFGGYDPVVPVYAGGIDLELPV---ADLKTQADRFLAGGFRAIKXKVG 170
Query: 214 K-NLKEDIEVLRAIRAVHPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
+ +LKED++ + A+R H SF L DAN + A+ L + E+P
Sbjct: 171 RPDLKEDVDRVSALRE-HLGDSFPLXVDANXKWTVDGAIRAARALAPFDLH--WIEEPTI 227
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK-GNLA----DVINI 318
DD G + + G ++A E+ +L D V+ G+L DV NI
Sbjct: 228 PDDLVGNARIVR----ESGHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNI 276
>pdb|2OPJ|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase
pdb|2QVH|A Chain A, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
pdb|2QVH|B Chain B, Crystal Structure Of O-Succinylbenzoate Synthase Complexed
With O- Succinyl Benzoate (Osb)
Length = 327
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 175 VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIR-AVH 230
V +T+ + T+P V P EAA + + G TT K+KV G++ D+ + A+R A+
Sbjct: 66 VRDTVPVNATVPAVGPEEAARIVAS---SGCTTAKVKVAERGQSEANDVARVEAVRDALG 122
Query: 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290
P +D N + AV + L + EQP D L V + + V
Sbjct: 123 PRGRVRIDVNGAWDVDTAVRXIRLLDRFELE--YVEQPCATVD--ELAEV----RRRVSV 174
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVE 349
+AADES R +D ++ ADV+ +K+ + GV AL + E GL +++ VE
Sbjct: 175 PIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGGVRAALRLAE---ECGLPVVVSSAVE 231
Query: 350 T 350
T
Sbjct: 232 T 232
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
LA + GF T+KL VG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLAVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 314 DVINIKLAKVG 324
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>pdb|1YEY|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|B Chain B, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|C Chain C, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|1YEY|D Chain D, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 444
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++
Sbjct: 207 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAXAVDANQRWDVGPAIDWXR 266
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
+L E + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 267 QLAEFDIA--WIEEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 321
Query: 314 DVINIKLAKVG 324
D+I I A+VG
Sbjct: 322 DLIQIDAARVG 332
>pdb|2PPG|A Chain A, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|B Chain B, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|C Chain C, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
pdb|2PPG|D Chain D, Crystal Structure Of Putative Isomerase From Sinorhizobium
Meliloti
Length = 399
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 28/251 (11%)
Query: 75 ENVAIRIELSNGCVGWGEAP--VLPHVTAEDQQTAMVKASEACEVLKESPA----MALGS 128
+V +RIE NG VGWGE V P T E + + + + L
Sbjct: 53 RSVLVRIETENGAVGWGETYGLVAPRATXEIIDDLLADFTIGRDPFDAAAIHDDLYDLXR 112
Query: 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDIT-IP 186
V G G + AA+++AL D K +P+ +L GG + I I+ +P
Sbjct: 113 VRGYTGGFY--------VDALAAIDIALWDLAGKLAGLPVCKLLGGQRRDRIAAYISGLP 164
Query: 187 IVSPAEAAELASKYRKQGFTTLKLK---VGKNLKEDIEVLRAIRAVHPDSSFILDANEGY 243
+ A+ AELA+ ++ +GF++ K + ++ E+LR + P D + +
Sbjct: 165 EDTRAKRAELAAAWQAKGFSSFKFASPVADDGVAKEXEILR--ERLGPAVRIACDXHWAH 222
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
EAV +++ G+ E PV +D +GL V+ ++A E R++ D
Sbjct: 223 TASEAVALIKAXEPHGLW--FAEAPVRTEDIDGLARVA----ASVSTAIAVGEEWRTVHD 276
Query: 304 -VKKIVKGNLA 313
V ++ + LA
Sbjct: 277 XVPRVARRALA 287
>pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
Length = 371
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 111/256 (43%), Gaps = 26/256 (10%)
Query: 79 IRIELSNGCVGWGEA-PVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLL 137
+RI G GWGE+ P + A + + L + + + L
Sbjct: 39 VRITTDTGIEGWGESTPFGSNYIASHPRGVRAGIATMAPSLIGLDPRRVDRINDAMDDAL 98
Query: 138 PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVS------PA 191
GH+ A + A+++A D KSV +P+ L GG +NT +P++S P
Sbjct: 99 LGHEDA-----KTAIDVACWDIFGKSVGLPVCELLGGRTNT-----RLPLISSIYVGEPE 148
Query: 192 EAAELASKYRKQGFTTLKLKV-GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVE 250
+ +KYR +G+ +K+ G+ + + + A+ PD FI+DAN + A+
Sbjct: 149 DMRARVAKYRAKGYKGQSVKISGEPVTDAKRITAALANQQPDEFFIVDANGKLSVETALR 208
Query: 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310
+L +L G+ L E P W + + K + + DE + + KI+
Sbjct: 209 LL-RLLPHGLDFAL-EAPCAT--WRECISL----RRKTDIPIIYDELATNEMSIVKILAD 260
Query: 311 NLADVINIKLAKVGVL 326
+ A+ I++K++K G L
Sbjct: 261 DAAEGIDLKISKAGGL 276
>pdb|3UXK|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXK|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Benzohydroxamate
pdb|3UXL|A Chain A, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|B Chain B, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|C Chain C, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
pdb|3UXL|D Chain D, P. Putida Mandelate Racemase Co-Crystallized With The
Intermediate Analogue Cupferron
Length = 383
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 34 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 93
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 94 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 143
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 144 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 203
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 204 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 259
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 260 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 309
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 310 LAQQFGIPMSSHLFQEISAHLLA 332
>pdb|1MRA|A Chain A, Mandelate Racemase Mutant D270n Co-Crystallized With
(S)-Atrolactate
Length = 359
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 119
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 120 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 179
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 180 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 235
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 236 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPNAMKIGGVTGWIRASA 285
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 286 LAQQFGIPMSSHLFQEISAHLLA 308
>pdb|4DYE|A Chain A, Crystal Structure Of An Enolase (Putative Sugar Isomerase,
Target Efi- 502095) From Streptomyces Coelicolor, No Mg,
Ordered Loop
Length = 398
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 137/344 (39%), Gaps = 50/344 (14%)
Query: 37 FKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL 96
F+++ + VDV +N+PL+ PFT + +R+ +G GWGE
Sbjct: 20 FQSMMKITDVDVWV-----VNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGE---- 70
Query: 97 PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQ---FASQLKVR--AA 151
M A A V + +P + S F + A H F L AA
Sbjct: 71 ----------TMWGAPVAAIVRRMAPDLIGTSPFALEAFHRKQHMVPFFYGYLGYAAIAA 120
Query: 152 VEMALIDAVAKSVSMPLWRLFGGVSNT---ITTDIT---IPIVSPAEAAELASKY----- 200
V++A DA+ K+ + L GG IT IT P +PA+ + +++
Sbjct: 121 VDVACWDAMGKATGQSVTDLLGGAVRDEVPITALITRADAPGATPADLPKAMAEHAVRVV 180
Query: 201 RKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260
+ GF +KLK + D+ +LRA+R P + +D N + ++V G+
Sbjct: 181 EEGGFDAVKLKGTTDCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRA-------GI 233
Query: 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320
+ D G+ ++ + K K + + + +D ++ N DVI+ +
Sbjct: 234 ALEELDLEYLEDPCVGIEGMAQV-KAKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDV 292
Query: 321 AKVGVLGALEIIEV---VRASGLNLMIGGMVETRLAMGFAGHLS 361
K G + A + + G+NL GG L + A HL+
Sbjct: 293 YKWGGIAATKALAAHCETFGLGMNLHSGG----ELGIATAAHLA 332
>pdb|1MNS|A Chain A, On The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (R)-Alpha-Phenylglycidate
pdb|2MNR|A Chain A, Mechanism Of The Reaction Catalyzed By Mandelate Racemase.
2. Crystal Structure Of Mandelate Racemase At 2.5
Angstroms Resolution: Identification Of The Active Site
And Possible Catalytic Residues
Length = 357
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 8 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 67
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 68 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 117
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 118 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 177
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 178 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 233
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 234 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 283
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 284 LAQQFGIPMSSHLFQEISAHLLA 306
>pdb|1DTN|A Chain A, Mandelate Racemase Mutant D270n Co-crystallized With
(s)-atrolactate
Length = 359
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 119
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 120 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 179
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 180 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 235
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 236 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 285
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 286 LAQQFGIPMSSHLFQEISAHLLA 308
>pdb|1MDR|A Chain A, The Role Of Lysine 166 In The Mechanism Of Mandelate
Racemase From Pseudomonas Putida: Mechanistic And
Crystallographic Evidence For Stereospecific Alkylation
By (r)-alpha-phenylglycidate
Length = 359
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 119
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 120 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 179
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 180 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 235
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 236 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 285
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 286 LAQQFGIPMSSHLFQEISAHLLA 308
>pdb|3DDM|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
pdb|3DDM|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bordetella Bronchiseptica Rb50
Length = 392
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/299 (21%), Positives = 120/299 (40%), Gaps = 27/299 (9%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
P+ P + + V + +E S+G VGWGE + + +V+ A
Sbjct: 20 FRYPVSTPVKTSFGTMHDRPAVLVEVEDSDGAVGWGEVWCNFPACGAEHRARLVETVLAP 79
Query: 116 EVLKES---PAMALGSVFGVVAGL-LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
+ + PA A + A L + + + A +++AL D A+ PLW
Sbjct: 80 LLTARAFADPAQAFAHLEARTAVLAIQTGEPGPLAQAIAGLDIALCDLAARRAGQPLWAW 139
Query: 172 FGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAIR 227
GG + I + ++P ++ ++ +G+ KLKVG ++++ + V +
Sbjct: 140 LGGSGDRI--GVYASGINPENPEDVVARKAAEGYRAFKLKVGFDDARDVRNALHVRELLG 197
Query: 228 AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD----DWEGLGHVSHI 283
A P + DAN+G+ A ++ ++L + E+P+ D +W L + +
Sbjct: 198 AATP---LMADANQGWDLPRARQMAQRLGPAQLD--WLEEPLRADRPAAEWAELAQAAPM 252
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLN 341
+A E+ + + + V+ LAK G G L + V A+GL
Sbjct: 253 -------PLAGGENIAGVAAFETALAARSLRVMQPDLAKWGGFSGCLPVARAVVAAGLR 304
>pdb|1MDL|A Chain A, Mandelate Racemase Mutant K166r Co-Crystallized With (R)-
Mandelate
Length = 359
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 119
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K ++G L +D+ V+
Sbjct: 120 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVV 179
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 180 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 235
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 236 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 285
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 286 LAQQFGIPMSSHLFQEISAHLLA 308
>pdb|3N4E|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING From Paracoccus Denitrificans Pd1222
pdb|3N4E|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING From Paracoccus Denitrificans Pd1222
pdb|4DWD|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Paracoccus Denitrificans Pd1222
Complexed With Magnesium
pdb|4DWD|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Paracoccus Denitrificans Pd1222
Complexed With Magnesium
Length = 393
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 40/287 (13%)
Query: 79 IRIELSNGCVGWGEA-PVLPH-----VTAEDQQTAMVKASEACEVLKESPAMALGSVFGV 132
+RI +G VGWGEA P L V A D + E EVL A+ L
Sbjct: 28 VRITAEDGTVGWGEASPXLGGIASLGVVARD----IAPFLEGQEVLDH--AVLLDRXXHR 81
Query: 133 VAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNT-------------- 178
+ L P + L AA ++AL D K + P+++L GG T
Sbjct: 82 LVKLGPEGIATAAL---AACDIALWDLKGKLLGQPIYKLLGGAWRTRLPCYSSIGGNAAR 138
Query: 179 ITTDITIPIVSPAEAAELAS-KYRKQGFTTLKLKVGKNLKEDIEVLRAIRA-VHPDSSFI 236
++ + EA + A+ K R G T + ++ DI RA+R + PD+
Sbjct: 139 SVDEVVREVARRVEAEQPAAVKIRWDGDRT---RCDVDIPGDIAKARAVRELLGPDAVIG 195
Query: 237 LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296
DAN GY A+ V L ++G + FE+PV G V+ + ++V+A E
Sbjct: 196 FDANNGYSVGGAIRVGRALEDLGYS--WFEEPVQHYHVGAXGEVAQ----RLDITVSAGE 249
Query: 297 SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLM 343
+L +K ++ + V + G+ G + + A G+ +
Sbjct: 250 QTYTLQALKDLILSGVRXVQPDIVKXGGITGXXQCAALAHAHGVEFV 296
>pdb|2PCE|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|E Chain E, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|F Chain F, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|G Chain G, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|2PCE|H Chain H, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Roseovarius Nubinhibens Ism
pdb|3FV9|G Chain G, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|A Chain A, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|D Chain D, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|E Chain E, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|F Chain F, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|B Chain B, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|H Chain H, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
pdb|3FV9|C Chain C, Crystal Structure Of Putative Mandelate
RacemaseMUCONATELACTONIZING Enzyme From Roseovarius
Nubinhibens Ism Complexed With Magnesium
Length = 386
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/293 (22%), Positives = 125/293 (42%), Gaps = 24/293 (8%)
Query: 79 IRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVAGL 136
+ IE G GWGE+ ++ A T A +L P ++ +
Sbjct: 38 VSIETDTGLTGWGESTPFGSTYIAAHAGGTRAALELLAPAILGMDPRQH-DRIWDRMRDT 96
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
L GH+ A RAA+++A D A++ +PL + GG V+ + +I +P
Sbjct: 97 LKGHRDA-----RAALDIACWDIAAQAAGLPLCDMTGGRVAGPVPVISSIGGDTPEAMRA 151
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV------HPDSSFILDANEGYKPQEAV 249
+++R QGF +K+G + E L A R P ++ DAN G + A+
Sbjct: 152 KVARHRAQGFKGHSIKIGASEAEGGPALDAERITACLADRQPGEWYLADANNGLTVEHAL 211
Query: 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309
+L L G+ ++ E P W + + + + + DE ++ D+ ++
Sbjct: 212 RML-SLLPPGLD-IVLEAPCA--SWA----ETKSLRARCALPLLLDELIQTETDLIAAIR 263
Query: 310 GNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361
+L D + +K++K G+ L + A+G+ + + V ++++ HL+
Sbjct: 264 DDLCDGVGLKVSKQGGITPMLRQRAIAAAAGMVMSVQDTVGSQISFAAILHLA 316
>pdb|3HPF|A Chain A, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
pdb|3HPF|B Chain B, Crystal Structure Of The Mutant Y90f Of Divergent
Galactarate Dehydratase From Oceanobacillus Iheyensis
Complexed With Mg And Galactarate
Length = 391
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 127/310 (40%), Gaps = 37/310 (11%)
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA 134
++V ++I G G GE H+ +K +L ++P L + +
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNP-FDLMKINKELT 80
Query: 135 GLLPG--HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA 191
P + F +R ++ AL D AK + + + GG V I + PI
Sbjct: 81 DNFPETMYYFEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIK--VCYPIFRHR 138
Query: 192 EAAELASKYR------KQGFTTLKLKVGKNLKEDIEVL--------RAIRAVHPDSSFIL 237
+ E+ S +QGF +L VGKNL D E L +R D S +L
Sbjct: 139 FSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLL 198
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
+ + ++ A++ L K Y++G+ + E P R+D++GL + + E
Sbjct: 199 NWKDAHR---AIKRLTK-YDLGLE--MIESPAPRNDFDGLYQL------RLKTDYPISEH 246
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGF 356
S ++++K + D+ NI +G L A + + ++++G E L++G
Sbjct: 247 VWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE--LSVGT 304
Query: 357 AGHLSAGLGC 366
A A LGC
Sbjct: 305 AA--MAHLGC 312
>pdb|2OQH|A Chain A, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|B Chain B, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|C Chain C, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
pdb|2OQH|D Chain D, Crystal Structure Of An Isomerase From Streptomyces
Coelicolor A3(2)
Length = 385
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 20/206 (9%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+N+PL+ PFT + +R+ +G GWGE T A + A
Sbjct: 13 VNLPLVNPFTSSFETKTGETRTVVRVRTDSGVEGWGE-------TXWGAPVAAIVRRXAP 65
Query: 116 EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175
+++ SP AL F +P AAV++A DA K+ + L GG
Sbjct: 66 DLIGTSP-FAL-EAFHRKQHXVPFFYGYLGYAAIAAVDVACWDAXGKATGQSVTDLLGGA 123
Query: 176 SNT---ITTDIT---IPIVSPAEAAELASKY-----RKQGFTTLKLKVGKNLKEDIEVLR 224
IT IT P +PA+ + +++ + GF +KLK + D+ +LR
Sbjct: 124 VRDEVPITALITRADAPGATPADLPKAXAEHAVRVVEEGGFDAVKLKGTTDCAGDVAILR 183
Query: 225 AIRAVHPDSSFILDANEGYKPQEAVE 250
A+R P + +D N + ++V
Sbjct: 184 AVREALPGVNLRVDPNAAWSVPDSVR 209
>pdb|2OQY|A Chain A, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|B Chain B, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|C Chain C, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|D Chain D, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|E Chain E, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|F Chain F, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|G Chain G, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|2OQY|H Chain H, The Crystal Structure Of Muconate Cycloisomerase From
Oceanobacillus Iheyensis
pdb|3ES7|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES7|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|C Chain C, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|D Chain D, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|E Chain E, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|F Chain F, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|G Chain G, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3ES8|H Chain H, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg And L-Malate.
pdb|3FYY|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3FYY|B Chain B, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Mg
pdb|3GD6|A Chain A, Crystal Structure Of Divergent Enolase From Oceanobacillus
Iheyensis Complexed With Phosphate
Length = 391
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 127/310 (40%), Gaps = 37/310 (11%)
Query: 75 ENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVVA 134
++V ++I G G GE H+ +K +L ++P L + +
Sbjct: 22 KHVIVKIHTDEGLTGIGEMSDFSHLPLYSVDLHDLKQGLLSILLGQNP-FDLMKINKELT 80
Query: 135 GLLPGHQFASQLK--VRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPA 191
P + + +R ++ AL D AK + + + GG V I + PI
Sbjct: 81 DNFPETMYYYEKGSFIRNGIDNALHDLCAKYLDISVSDFLGGRVKEKIK--VCYPIFRHR 138
Query: 192 EAAELASKYR------KQGFTTLKLKVGKNLKEDIEVL--------RAIRAVHPDSSFIL 237
+ E+ S +QGF +L VGKNL D E L +R D S +L
Sbjct: 139 FSEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEEFGSRVRIKSYDFSHLL 198
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
+ + ++ A++ L K Y++G+ + E P R+D++GL + + E
Sbjct: 199 NWKDAHR---AIKRLTK-YDLGLE--MIESPAPRNDFDGLYQL------RLKTDYPISEH 246
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRASGLNLMIGGMVETRLAMGF 356
S ++++K + D+ NI +G L A + + ++++G E L++G
Sbjct: 247 VWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYAAEVASKDVVLGTTQE--LSVGT 304
Query: 357 AGHLSAGLGC 366
A A LGC
Sbjct: 305 AA--MAHLGC 312
>pdb|2GDQ|A Chain A, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From Bacillus Subtilis At 1.8 A
Resolution
pdb|2GDQ|B Chain B, Crystal Structure Of Mandelate Racemase/muconate
Lactonizing Enzyme From Bacillus Subtilis At 1.8 A
Resolution
pdb|2GGE|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
pdb|2GGE|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
Lactonizing Enzyme From Bacillus Subtilis Complexed With
Mg++ At 1.8 A
Length = 382
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 46/314 (14%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA----PVLPHVTA 101
V + R E PL L P+ A IRI +G GWGE P L HV
Sbjct: 4 VKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPAL-HVGF 62
Query: 102 EDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVA 161
+ + +A GS +V + HQ A+ +AV MAL + A
Sbjct: 63 TKRIIPFLLGKQA------------GSRLSLVRTIQKWHQRAA-----SAVSMALTEIAA 105
Query: 162 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKY-----------RKQGFTTLKL 210
K+ + L+GG IP+ + ++ + ++ K+GF +K+
Sbjct: 106 KAADCSVCELWGGRYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKV 160
Query: 211 KV-GKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
K+ G + KED+ + A++ S + ILDAN+ Y A + E+ + E+P
Sbjct: 161 KIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFK-WERYFSEWTNIGWLEEP 219
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLG 327
+ D + + + + V VA E+ + ++ D+I + V G+
Sbjct: 220 LPFDQPQDYA----MLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDE 275
Query: 328 ALEIIEVVRASGLN 341
+ +++ R G+
Sbjct: 276 FRDCLQLARYFGVR 289
>pdb|3MWC|A Chain A, Crystal Structure Of Probable O-Succinylbenzoic Acid
Synthet Kosmotoga Olearia
Length = 400
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/336 (22%), Positives = 142/336 (42%), Gaps = 50/336 (14%)
Query: 58 VPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMV--KASE 113
+P+ PF I++ ++ + I + G+GE+ P E +T V K
Sbjct: 19 IPMKIPFQISSGTCYTRRSLVVEIREGD-LFGYGESAPFEEPFYLGETLETTKVILKNHL 77
Query: 114 ACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL-- 171
+L + P +++ ++ + G+ FA R VE A D +AK + L +
Sbjct: 78 LPMILGKEP-LSIEEFNHLIKNGIRGNHFA-----RCGVENAYWDLIAKKNKISLKAMIE 131
Query: 172 -----------FGGVSNTITTDITIPIVSPAEAAELASKYR---KQGFTTLKLKV--GKN 215
+ +N I + + I L + ++G+ +K+K+ G +
Sbjct: 132 KKMKNLGVKQEYLASNNYIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIKPGWD 191
Query: 216 LKEDIEVLRAIRAVHP-----DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270
++ E RA+ P +SSF LD E +K +A + L EQP+H
Sbjct: 192 VEPLQETRRAVGDHFPLWTDANSSFELDQWETFKAMDAAKCL-----------FHEQPLH 240
Query: 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 329
+E L + + ++ + DES S + + K ++++ NIK+ +V G+L A+
Sbjct: 241 ---YEALLDLKELG-ERIETPICLDESLISSRVAEFVAKLGISNIWNIKIQRVGGLLEAI 296
Query: 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365
+I ++ +G+ L G M E+ L F L++ G
Sbjct: 297 KIYKIATDNGIKLWGGTMPESGLGARFLISLASFRG 332
>pdb|3TOY|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|C Chain C, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TOY|D Chain D, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Sp. Ors278 With Calcium
And Acetate Bound
pdb|3TTE|A Chain A, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
pdb|3TTE|B Chain B, Crystal Structure Of Enolase Brado_4202 (Target
Efi-501651) From Bradyrhizobium Complexed With Magnesium
And Mandelic Acid
Length = 383
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE-LASKYRKQGFTTL 208
+ ++MA DA+ + P+ L GG + I + ++ + L + + GF +
Sbjct: 128 SGLDMAFWDALGQLAGKPVVELLGGSARPIPAYDSYGVLDARDDERTLRTACDEHGFRAI 187
Query: 209 KLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266
K K G +L D +++ +RA+ PD + +LD N+ P EA + +L + +T E
Sbjct: 188 KSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLT--WIE 245
Query: 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG 324
+PV +++ G V +++ + + A E+ + + +D I L KVG
Sbjct: 246 EPVPQENLSGHAAV----RERSEIPIQAGENWWFPRGFAEAIAAGASDFIMPDLMKVG 299
>pdb|4E4F|A Chain A, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|B Chain B, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|C Chain C, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
pdb|4E4F|D Chain D, Crystal Structure Of Enolase Pc1_0802 (Target Efi-502240)
From Pectobacterium Carotovorum Subsp. Carotovorum Pc1
Length = 426
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 49/223 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELASKYRKQGFTTL 208
+AV+MAL D AK+ +MPL++L GG S T + S E + +K+R QGF +
Sbjct: 109 SAVDMALWDIKAKAANMPLYQLLGGASRTGVMVYCHTTGHSIDEVLDDYAKHRDQGFKAI 168
Query: 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
+++ G E + + + + A +G P+E + EK + TP LFE
Sbjct: 169 RVQCGVPGMETTYGMAKGKGLAYEP-----ATKGSLPEEQLWSTEKY--LDFTPKLFE-- 219
Query: 269 VHRDDW---EGLGHVSH-----IAKDKFGVSV-------------AADESC--------- 298
RD + E L H H I +FG SV A +++C
Sbjct: 220 AVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWMEDPTPAENQACFRLIRQHTV 279
Query: 299 ---------RSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 332
S+ D K++++ L D I + G + + I
Sbjct: 280 TPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRI 322
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 122/286 (42%), Gaps = 34/286 (11%)
Query: 72 DQVEN----VAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALG 127
DQ N + I+I +G GWGEA + ++ A++ E + P +++
Sbjct: 28 DQWSNTKKFIIIKITTEDGIEGWGEAF---SINFREKGIAII-IKELFREISNIPNLSIK 83
Query: 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI 187
S + ++ L GH+ +A+E+AL D K ++PL L T + +PI
Sbjct: 84 SFYNKISLLSDGHRGLDFSSATSAIEIALWDISGKLKNLPLNSLL-----TKSPKPNVPI 138
Query: 188 VSP--AEAAELASKYRKQGFTTLKLKVG--------KNLKEDIEVLRAIRAVHPDS-SFI 236
+ ++ + + Y +Q K G +L I+ + +R + D +
Sbjct: 139 YATCWSDLKKDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLM 198
Query: 237 LDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
LD P++ + L E+ P E+PV D E + ++ I K+ F + V
Sbjct: 199 LDL---AVPEDLDQTKSFLKEVSSFNPYWIEEPV---DGENISLLTEI-KNTFNMKVVTG 251
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLN 341
E L ++++ N AD+ N ++ +G G ++IIE+ + N
Sbjct: 252 EKQSGLVHFRELISRNAADIFNPDISGMG--GLIDIIEISNEASNN 295
>pdb|2NQL|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
pdb|2NQL|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
From Agrobacterium Tumefaciens
Length = 388
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 128/330 (38%), Gaps = 41/330 (12%)
Query: 75 ENVAIRIELSNGCVGWGE-----APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
+V +R+ G VGWGE AP D V +A + P+ +
Sbjct: 51 RSVLVRMTTEAGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASD-----PSAVYDDL 105
Query: 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIV 188
+ ++ + G+ + AA+++AL D + + L GG ++ ++ +P
Sbjct: 106 YDMMR--VRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPER 163
Query: 189 SPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+ ELA ++ +GF K +I LR + + P + D + P
Sbjct: 164 TLKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQV--LGPQAKIAADMHWNQTP 221
Query: 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 305
+ A+E++ ++ P E PV +D GL VS V +A E R+ D++
Sbjct: 222 ERALELIAEMQPF--DPWFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMR 275
Query: 306 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365
++ ++ ++ G+ + I + G++++ H + G G
Sbjct: 276 ARIERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIP--------------HATVGAG 321
Query: 366 CFKFIDLDTPLLLSEDPVLDGYEVSGAVYK 395
F L LS +L G+E ++++
Sbjct: 322 IFLAASLQASSTLS---MLKGHEFQHSIFE 348
>pdb|4DN1|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
pdb|4DN1|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup Member) From Agrobacterium Tumefaciens (Target
Efi-502088) With Bound Mg And Formate
Length = 408
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 128/330 (38%), Gaps = 41/330 (12%)
Query: 75 ENVAIRIELSNGCVGWGE-----APVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129
+V +R+ G VGWGE AP D V +A + P+ +
Sbjct: 71 RSVLVRMTTEAGTVGWGETYGIVAPGAVAALINDLLAGFVIGRDASD-----PSAVYDDL 125
Query: 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT-IPIV 188
+ ++ + G+ + AA+++AL D + + L GG ++ ++ +P
Sbjct: 126 YDMMR--VRGYTGGFYVDALAALDIALWDIAGQEAGKSIRDLLGGGVDSFPAYVSGLPER 183
Query: 189 SPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+ ELA ++ +GF K +I LR + + P + D + P
Sbjct: 184 TLKARGELAKYWQDRGFNAFKFATPVADDGPAAEIANLRQV--LGPQAKIAADMHWNQTP 241
Query: 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 305
+ A+E++ ++ P E PV +D GL VS V +A E R+ D++
Sbjct: 242 ERALELIAEMQPF--DPWFAEAPVWTEDIAGLEKVSK----NTDVPIAVGEEWRTHWDMR 295
Query: 306 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365
++ ++ ++ G+ + I + G++++ H + G G
Sbjct: 296 ARIERCRIAIVQPEMGHKGITNFIRIGALAAEHGIDVIP--------------HATVGAG 341
Query: 366 CFKFIDLDTPLLLSEDPVLDGYEVSGAVYK 395
F L LS +L G+E ++++
Sbjct: 342 IFLAASLQASSTLS---MLKGHEFQHSIFE 368
>pdb|3U4F|A Chain A, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|B Chain B, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|C Chain C, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
pdb|3U4F|D Chain D, Crystal Structure Of A Mandelate Racemase (Muconate
Lactonizing Enzyme Family Protein) From Roseovarius
Nubinhibens
Length = 388
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 104/266 (39%), Gaps = 39/266 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MALGSVFGVVAGLL 137
+R+ +G GWG Q + + CEVL A LG + LL
Sbjct: 39 VRVTSEDGARGWG-------------QVSTYHSDITCEVLHRQVAPWXLGQDCSDLDDLL 85
Query: 138 PG-----HQFASQL--KVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--V 188
H+F + A V+ A+ D K P+ L GG + TI + +
Sbjct: 86 DLVTEREHKFPGSYLRRAXAGVDTAIWDLRGKQAGKPVAELLGGSAGTIRAYASSXKRDI 145
Query: 189 SPAEAAELASKYRK-QGFTTLKLK----VGKNLKE----DIEVLRAIRAVHPDSS-FILD 238
+P + AE + R GF K++ VG+ E E++ R DS+ ++D
Sbjct: 146 TPHDEAERXKRLRDAHGFDAFKVRAGAEVGRGRDEWPGRTEEIVPTXRREXGDSAALLID 205
Query: 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298
AN Y P +A+E+ + L + G + FE+P + E VS + + V E
Sbjct: 206 ANSCYAPAQAIELGKLLQDHGFS--HFEEPCPYWELEQTKEVS----EALDIDVTGGEQD 259
Query: 299 RSLDDVKKIVKGNLADVINIKLAKVG 324
L ++ + DV+ + +G
Sbjct: 260 CDLTTWRRXIDXRAVDVVQPDILYLG 285
>pdb|4GIR|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIR|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Ethylene Glycol And Sulfate Bound
(Ordered Loops, Space Group P41212)
pdb|4GIS|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GIS|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Glycerol And Dicarboxylates Bound
(Mixed Loops, Space Group I4122)
pdb|4GGH|A Chain A, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|B Chain B, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|C Chain C, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
pdb|4GGH|D Chain D, Crystal Structure Of An Enolase Family Member From Vibrio
Harveyi (Efi-Target 501692) With Homology To Mannonate
Dehydratase, With Mg, Hepes, And Ethylene Glycol Bound
(Ordered Loops, Space Group C2221)
Length = 422
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 99/239 (41%), Gaps = 42/239 (17%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA-AELASKYRKQGFTTL 208
+ V+MAL D AK +MPL +LFGG S T E E KY +QG+ +
Sbjct: 114 SGVDMALWDIKAKIANMPLHQLFGGKSRDAIQVYTHATSDTMEGLYEQVDKYLEQGYQHI 173
Query: 209 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 243
+ ++G + ++ +E+ + +R + IL D +E
Sbjct: 174 RCQLGFYGGVPENIQTAQNPTQGSYYDQDQYIENTVEMFKNLREKYGKQFHILHDVHERL 233
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
P +A++ +++ + P E + E L ++ +++ VS+A E + ++
Sbjct: 234 FPNQAIQFAKQIEQ--YNPFFIEDILPPSQTEWLDNI----RNQSSVSLALGELFNNPEE 287
Query: 304 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMVETRL 352
K ++ D I ++++ G+ AL++ + G+ + IG V T L
Sbjct: 288 WKALIINRRVDFIRCHVSQIGGITPALKLGHFCESFGVRIAWHCPPDMTPIGAAVNTHL 346
>pdb|3TJ4|A Chain A, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|3TJ4|B Chain B, Crystal Structure Of An Enolase From Agrobacterium
Tumefaciens (Efi Target Efi-502087) No Mg
pdb|4H19|A Chain A, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|B Chain B, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|C Chain C, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|D Chain D, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|E Chain E, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|F Chain F, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|G Chain G, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|H Chain H, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|I Chain I, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|K Chain K, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|L Chain L, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|M Chain M, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|N Chain N, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|P Chain P, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|J Chain J, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
pdb|4H19|O Chain O, Crystal Structure Of An Enolase (Mandelate Racemase
Subgroup, Target Efi-502087) From Agrobacterium
Tumefaciens, With Bound Mg And D- Ribonohydroxamate,
Ordered Loop
Length = 372
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 22/291 (7%)
Query: 56 LNVPLIA-PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEA 114
L++PL + + +T + V +I S+G G+G H+ ++ T+ + A
Sbjct: 11 LHLPLTSESISDSTHSITHWGVVGAKITTSDGIEGYGFTGTHAHLPSDRLITSCISDCYA 70
Query: 115 CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVR----AAVEMALIDAVAKSVSMPLWR 170
+L E + S P Q+ + + AAV++AL D AK +PLW
Sbjct: 71 PLLLGEDASDH--SRLWTKLARYPSLQWVGRAGITHLALAAVDVALWDIKAKKAGVPLWH 128
Query: 171 LFGGVSN----TITTDI-TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKE-DIEVLR 224
GG TDI + A A + GFT LK+KVG + DI L
Sbjct: 129 YLGGARTAGVEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLT 188
Query: 225 AIRA-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHI 283
A+R V +D N + ++ + FE+P+ DD + + +
Sbjct: 189 AVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDI--YWFEEPLWYDD---VTSHARL 243
Query: 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV 334
A++ + +A E ++D + + + + ++G G E I+V
Sbjct: 244 ARNT-SIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLG--GITEYIQV 291
>pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3P3B|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3QPE|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|C Chain C, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|D Chain D, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3VCC|A Chain A, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
pdb|3VCC|B Chain B, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
Length = 392
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 109/282 (38%), Gaps = 43/282 (15%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAAEL 196
R +E ++D + + P++ L G + +P + A L
Sbjct: 92 RLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVAL 151
Query: 197 ASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAVH-PDSSFILDANEG 242
+ QG+ K+KVG+ K DI ++R I V P ++DAN
Sbjct: 152 MQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNA 211
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRS 300
Y EVL L + V E+ H D+ +E L + + V +A E S
Sbjct: 212 YNLNLTKEVLAALSD--VNLYWLEEAFHEDEALYEDL--KEWLGQRGQNVLIADGEGLAS 267
Query: 301 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ +G + DV+ + G +E+ E + A GL + +GHL
Sbjct: 268 PHLIEWATRGRV-DVLQYDIIWPGFTHWMELGEKLDAHGLR-SAPHCYGNAYGIYASGHL 325
Query: 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 402
SA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 326 SAAVRNFEFVEYD-------DITIEGMDVSG--YRIENGEIH 358
>pdb|3MZN|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3MZN|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043
pdb|3NFU|A Chain A, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
pdb|3NFU|B Chain B, Crystal Structure Of Probable Glucarate Dehydratase From
Chromohalobacter Salexigens Dsm 3043 Complexed With
Magnesium
Length = 450
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 34/147 (23%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGG----------------VSNTITTDITIPIV- 188
+ V A+E AL D +++ MP+ L G + + TD+ P V
Sbjct: 107 VHVITAIESALFDLFGQALGMPVADLLGQYGRQRDEVEALGYLFLLGDPDKTDLPYPRVA 166
Query: 189 ---------------SPAEAAELA-SKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP 231
+P A LA + Y + GF KLK G +E+ + +RA+ P
Sbjct: 167 DPVDAWDEVRYREAMTPEAVANLARAAYDRYGFKDFKLKGGVLRGEEEADCIRALHEAFP 226
Query: 232 DSSFILDANEGYKPQEAVEVLEKLYEM 258
++ LD N +K EAV VLE + +
Sbjct: 227 EARLALDPNGAWKLDEAVRVLEPIKHL 253
>pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|B Chain B, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|C Chain C, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|D Chain D, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5F|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
Length = 392
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 108/282 (38%), Gaps = 43/282 (15%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAAEL 196
R +E ++D + + P++ L G + +P + A L
Sbjct: 92 RLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVAL 151
Query: 197 ASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAVH-PDSSFILDANEG 242
+ QG+ K+KVG+ K DI ++R I V P ++DAN
Sbjct: 152 MQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNA 211
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRS 300
Y EVL L + V E H D+ +E L + + V +A E S
Sbjct: 212 YNLNLTKEVLAALSD--VNLYWLEAAFHEDEALYEDL--KEWLGQRGQNVLIADGEGLAS 267
Query: 301 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ +G + DV+ + G +E+ E + A GL + +GHL
Sbjct: 268 PHLIEWATRGRV-DVLQYDIIWPGFTHWMELGEKLDAHGLR-SAPHCYGNAYGIYASGHL 325
Query: 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 402
SA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 326 SAAVRNFEFVEYD-------DITIEGMDVSG--YRIENGEIH 358
>pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3OPS|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
Length = 392
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 107/282 (37%), Gaps = 43/282 (15%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIP------------IVSPAEAAEL 196
R +E ++D + + P++ L G + +P + A L
Sbjct: 92 RLQLEYPVLDWLGQRQGKPVYDLVSGAHLETGASLVVPCYDTSLYFDDLHLADERAAVAL 151
Query: 197 ASKYRKQGFTT----LKLKVGKN---------LKEDIEVLRAIRAV-HPDSSFILDANEG 242
+ QG+ K+KVG+ K DI ++R I V P +DAN
Sbjct: 152 XQEEAXQGYAKGQRHFKIKVGRGGRHXPLWEGTKRDIAIVRGISEVAGPAGKIXIDANNA 211
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD--WEGLGHVSHIAKDKFGVSVAADESCRS 300
Y EVL L + V E+ H D+ +E L + + V +A E S
Sbjct: 212 YNLNLTKEVLAALSD--VNLYWLEEAFHEDEALYEDL--KEWLGQRGQNVLIADGEGLAS 267
Query: 301 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ +G + DV+ + G E+ E + A GL + +GHL
Sbjct: 268 PHLIEWATRGRV-DVLQYDIIWPGFTHWXELGEKLDAHGLR-SAPHCYGNAYGIYASGHL 325
Query: 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGH 402
SA + F+F++ D D ++G +VSG Y+ N H
Sbjct: 326 SAAVRNFEFVEYD-------DITIEGXDVSG--YRIENGEIH 358
>pdb|3CYJ|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
pdb|3CYJ|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Rubrobacter
Xylanophilus
Length = 372
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 204 GFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKL-YEMGVT 261
G +K+KVG+ ++D E +RA R A+ ++DAN Y ++A+ E G++
Sbjct: 159 GIPRVKMKVGREPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGIS 218
Query: 262 PVLFEQPVHRDDWEGLGHVSHIAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIK 319
E+PV +D EGL + +D+ GV++AA E +L + +LA ++I
Sbjct: 219 --YLEEPVSSEDREGL----RLLRDRGPGGVAIAAGEYEWTLPQLH-----DLAGCVDIL 267
Query: 320 LAKV----GVLGALEIIEVVRA 337
A V G+ G L + + R
Sbjct: 268 QADVTRCGGITGLLRVDGICRG 289
>pdb|4E4U|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme (Target Psi-200780) From Burkholderia
Sar-1
Length = 412
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 34/209 (16%)
Query: 144 SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT----------IPIVSPAEA 193
+ + V + +EMA D + K+ + P++ L GG + T P A
Sbjct: 89 TMMGVVSGLEMACWDIIGKAAAKPVYELLGGRIHERLRSYTYLYPKNAKGEYDYDDPDLA 148
Query: 194 AELASKYRKQGFTTLKLK--------VGKNLKEDIEVL--------RAIRAVHPDSSFIL 237
AE A++ K GFT +K G L +EVL R AV + +
Sbjct: 149 AECAAENVKLGFTAVKFDPAGPYTAYSGHQL--SLEVLDRCELFCRRVREAVGSKADLLF 206
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
+ P A+ + ++L + P+ FE+PV E + V+ + +A E
Sbjct: 207 GTHGQMVPSSAIRLAKRLEKY--DPLWFEEPVPPGQEEAIAQVA----KHTSIPIATGER 260
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVL 326
+ + K+++ A ++ + +A+VG L
Sbjct: 261 LTTKYEFHKLLQAGGASILQLNVARVGGL 289
>pdb|3RCY|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|E Chain E, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|F Chain F, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|G Chain G, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
pdb|3RCY|H Chain H, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME- Like Protein From Roseovarius Sp.
Tm1035
Length = 433
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 33/245 (13%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDIT----------IPIVSPAE-AAELAS 198
+ +E+A D + K+ P+W L GG N T P + A+ AAE A+
Sbjct: 96 SGLEIACWDILGKARGRPVWALLGGKMNPRIRAYTYLYPLPHHPITPFWTSADMAAESAA 155
Query: 199 KYRKQGFTTLK--------LKVGK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+G+T +K L+ G ++ +E R IRA D + +L G
Sbjct: 156 DCVARGYTAVKFDPAGPYTLRGGHMPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFT 215
Query: 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVK 305
L + E +P+ +E+PV D+ +G ++ +A+ + VA E + +
Sbjct: 216 TAGAIRLGQAIEP-YSPLWYEEPVPPDN---VGAMAQVAR-AVRIPVATGERLTTKAEFA 270
Query: 306 KIVKGNLADVINIKLAKVGVLGALE----IIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361
+++ A ++ L + G + ++ + EV A + G VE + FA +
Sbjct: 271 PVLREGAAAILQPALGRAGGIWEMKKVAAMAEVYNAQMAPHLYAGPVEWAANVHFAASIP 330
Query: 362 AGLGC 366
L C
Sbjct: 331 NILMC 335
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/357 (22%), Positives = 135/357 (37%), Gaps = 80/357 (22%)
Query: 79 IRIELSNGCVGWGEAPV---LPHVTAEDQQTA--MVKAS--EACEVLKESPAMALGSVFG 131
+++ G VGW E P VTA +Q +V AS E E+ + + G
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVMEHERFFAEAYCLTRPATGG 82
Query: 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTD 182
VV+ + A+E AL+DA AK++++P + L GG S+ T
Sbjct: 83 VVSEGI------------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWR 130
Query: 183 ITIPIVSPAEAAEL------ASKYRKQGFTTLKL-------------------------- 210
I P +L A + R++ F +K
Sbjct: 131 INHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALN 190
Query: 211 ---KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
KV +NL+ +E LR PD +LD N KP+ +++L +L + LF
Sbjct: 191 VDRKVLRNLRAHLEALR--DGAGPDVEILLDLNFNAKPEGYLKILRELADFD----LFWV 244
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
+ +GL +V + + +++ E+ + + K N DV + GV
Sbjct: 245 EIDSYSPQGLAYVRNHSPH----PISSCETLFGIREFKPFFDANAVDVAIVDTIWNGVWQ 300
Query: 328 ALEIIEVVRASGLNLM---IGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSED 381
+++I A +N+ G + T + FA A + + ++ D L ED
Sbjct: 301 SMKIAAFADAHDINVAPHNFYGHLCTMINANFA----AAVPNLRIMETDIDRLAWED 353
>pdb|3R4E|A Chain A, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|B Chain B, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|C Chain C, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|D Chain D, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 418
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELA 197
++ AAV+MAL D AK MPL++L GG S + +DI AE E
Sbjct: 99 MRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAV 151
Query: 198 SKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKL 255
Y G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL
Sbjct: 152 GHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKL 209
Query: 256 YE 257
+E
Sbjct: 210 FE 211
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 123/333 (36%), Gaps = 82/333 (24%)
Query: 79 IRIELSNGCVGWGEAPV---LPHVTAEDQQTA--MVKAS--EACEVLKESPAMALGSVFG 131
+++ G VGW E P VTA +Q +V AS E E+ + + G
Sbjct: 23 VKLTTDEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVXEHERFFAEAYCLTRPATGG 82
Query: 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG---------VSNTITTD 182
VV+ + A+E AL+DA AK++++P + L GG S+ T
Sbjct: 83 VVSEGI------------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWSHCPTWR 130
Query: 183 ITIPIVSPAEAAEL------ASKYRKQGFTTLKL-------------------------- 210
I P +L A + R++ F +K
Sbjct: 131 INHPKFFGPPVTDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALN 190
Query: 211 ---KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
KV +NL+ +E LR PD +LD N KP+ +++L +L + LF
Sbjct: 191 VDRKVLRNLRAHLEALR--DGAGPDVEILLDLNFNAKPEGYLKILRELADFD----LFWV 244
Query: 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG 327
+ +GL +V + + +++ E+ + + K N DV + GV
Sbjct: 245 EIDSYSPQGLAYVRNHSPH----PISSCETLFGIREFKPFFDANAVDVAIVDTIWNGVWQ 300
Query: 328 ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
+ +I A +N+ F GHL
Sbjct: 301 SXKIAAFADAHDINVA---------PHNFYGHL 324
>pdb|3VDG|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Formate And Acetate
pdb|3VFC|A Chain A, Crystal Structure Of Enolase Msmeg_6132 (Target
Efi-502282) From Mycobacterium Smegmatis Str. Mc2 155
Complexed With Tartrate
Length = 445
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 191 AEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 249
A+A + +Y GF+ +KLK G +E++ + A+RA PD LD N + PQ +V
Sbjct: 199 AQARRMIDEY---GFSAIKLKGGVFAPEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSV 255
Query: 250 EVLEKL 255
+V L
Sbjct: 256 KVAAGL 261
>pdb|2QJJ|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJN|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
Length = 402
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELA 197
++ AAV+MAL D AK MPL++L GG S + +DI AE E
Sbjct: 83 MRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAV 135
Query: 198 SKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKL 255
Y G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL
Sbjct: 136 GHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKL 193
Query: 256 YE 257
+E
Sbjct: 194 FE 195
>pdb|3TJI|A Chain A, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|B Chain B, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|C Chain C, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
pdb|3TJI|D Chain D, Crystal Structure Of An Enolase From Enterobacter Sp. 638
(Efi Target Efi-501662) With Bound Mg
Length = 422
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 47/231 (20%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK------Q 203
+ V+MAL D + MPL++LFGG S IP S A L + + Q
Sbjct: 114 SGVDMALWDIKGQLAGMPLYQLFGGKSRD-----AIPAYSHASGETLEALFASVDALIAQ 168
Query: 204 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 238
G+ ++ ++G + + +E+ A+R + IL D
Sbjct: 169 GYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHD 228
Query: 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQ--PVHRDDWEGLGHVSHIAKDKFGVSVAADE 296
+E PQ+AV++ ++L P E P + W L V + + V +A E
Sbjct: 229 VHERLFPQQAVQLAKQLEPF--QPYFIEDILPPQQSAW--LEQV----RQQSCVPLALGE 280
Query: 297 SCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGG 346
+ + ++ D I ++++ G+ AL++ + +A G+ L G
Sbjct: 281 LFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAHLCQAFGVRLAWHG 331
>pdb|2QJM|A Chain A, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|B Chain B, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|C Chain C, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|D Chain D, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 402
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 19/122 (15%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGGVS--------NTITTDITIPIVSPAEAAELA 197
++ AAV+MAL D AK MPL++L GG S + +DI AE E
Sbjct: 83 MRAIAAVDMALWDIKAKMAGMPLYQLLGGRSRDGIMVYGHANGSDI-------AETVEAV 135
Query: 198 SKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKL 255
Y G+ ++ + G +K+ V R P D+S L + G+ ++A+ + KL
Sbjct: 136 GHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADAS--LPSVTGWDTRKALNYVPKL 193
Query: 256 YE 257
+E
Sbjct: 194 FE 195
>pdb|2HZG|A Chain A, Crystal Stucture Of Predicted Mandelate Racemase From
Rhodobacter Sphaeroides
pdb|2HZG|B Chain B, Crystal Stucture Of Predicted Mandelate Racemase From
Rhodobacter Sphaeroides
Length = 401
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 15/202 (7%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV--SPAEAAELASKYRKQGFTT 207
+ +EMAL D + + +S P W L G ++ + +P E E A R+ GF
Sbjct: 104 SGIEMALWDLLGRRLSAPAWALLGYSASHGKRPYASLLFGDTPQETLERARAARRDGFAA 163
Query: 208 LKLKVGK----NLKEDIEVLRAIR-AVHPDSSFILDANE--GYKPQEAVEVLEKLYEMGV 260
+K G + D + + A R + PD ++D + G + A L L GV
Sbjct: 164 VKFGWGPIGRGTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGV 223
Query: 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320
+ E+P D L + +A V +A E+ + + ++ I I
Sbjct: 224 --LWLEEPF---DAGALAAHAALAGRGARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDC 278
Query: 321 AKVGVLG-ALEIIEVVRASGLN 341
++G LG A + + +A G+
Sbjct: 279 GRIGGLGPAKRVADAAQARGIT 300
>pdb|4IL2|A Chain A, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|B Chain B, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|C Chain C, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
pdb|4IL2|D Chain D, Crystal Structure Of D-mannonate Dehydratase (rspa) From
E. Coli Cft073 (efi Target Efi-501585)
Length = 426
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 47/222 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNT-ITTDITIPIVSPAEAAELASKYRKQGFTTL 208
+AV+MAL D AK+ +MPL++L GG S + S EA + +++++ GF +
Sbjct: 109 SAVDMALWDIKAKAANMPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGFKAI 168
Query: 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILD-ANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267
+++ G I ++ + + A +G P+E + EK + P LF+
Sbjct: 169 RVQCG------IPGMKTTYGMSKGKGLAYEPATKGQWPEEQLWSTEKY--LDFMPKLFDA 220
Query: 268 PVHRDDW-EGLGHVSH-----IAKDKFGVSV-------------AADESC---------- 298
++ + E L H H I +FG S+ A ++ C
Sbjct: 221 VRNKFGFDEHLLHDMHHRLTPIEAARFGKSIEDYRMFWMEDPTPAENQECFRLIRQHTVT 280
Query: 299 --------RSLDDVKKIVKGNLADVINIKLAKVGVLGALEII 332
S+ D K++++ L D I L G + + I
Sbjct: 281 PIAVGEVFNSIWDCKQLIEEQLIDYIRTTLTHAGGITGMRRI 322
>pdb|3T9P|A Chain A, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
pdb|3T9P|B Chain B, Crystal Structure Of A Putative Mandelate RacemaseMUCONATE
Lactonizing Enzyme Family Protein From Roseovarius
Length = 388
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 24/140 (17%)
Query: 147 KVRAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASK 199
+ ++ AL D K P+ L GG ++++ DIT P + AE +
Sbjct: 102 RAMTGLDTALWDMRGKLEGKPVATLLGGSPGPVRAYASSMRRDIT-----PEDEAERFCR 156
Query: 200 YRK-QGFTTLKLKVGKNLKEDIE---------VLRAIRAVHPDSSFILDANEGYKPQEAV 249
R +GFT K +VG D + V RA+ ++D N Y P A+
Sbjct: 157 LRDDKGFTAFKWRVGAEAGRDHDEWPGRTEAVVPTVSRALGDGIEKLVDGNSCYSPARAI 216
Query: 250 EVLEKLYEMGVTPVLFEQPV 269
EV + L + G+ FE+P
Sbjct: 217 EVGKLLQDNGIG--HFEEPC 234
>pdb|3GY1|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
pdb|3GY1|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Protein From Clostridium Beijerinckii Ncimb
8052
Length = 408
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA-SKYRKQGFTTL 208
+ V+MAL D K +MPL++LFGG S T + E + RK+G+ +
Sbjct: 93 SGVDMALWDIKGKLANMPLYQLFGGKSRDAIAAYTHAVADNLEDLYTEIDEIRKKGYQHI 152
Query: 209 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 243
+ ++G + ++ + + ++R + IL D +E
Sbjct: 153 RCQLGFYGGNSSEFHTTDNPTQGSYFDQDEYMRTTVSMFSSLREKYGYKFHILHDVHERL 212
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
P +AV+ + + + P E + D E LG + + + +A E + +
Sbjct: 213 FPNQAVQFAKDVEKY--KPYFIEDILPPDQNEWLGQI----RSQTSTPLATGELFNNPME 266
Query: 304 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
K ++ D I ++++ G+ AL++ + A G+ +
Sbjct: 267 WKSLIANRQVDFIRCHVSQIGGITPALKLGSLCAAFGVRI 306
>pdb|3S47|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
pdb|3S47|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Clostridium Beijerincki Complexed With Mg
Length = 401
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELA-SKYRKQGFTTL 208
+ V+MAL D K +MPL++LFGG S T + E + RK+G+ +
Sbjct: 93 SGVDMALWDIKGKLANMPLYQLFGGKSRDAIAAYTHAVADNLEDLYTEIDEIRKKGYQHI 152
Query: 209 KLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-DANEGY 243
+ ++G + ++ + + ++R + IL D +E
Sbjct: 153 RCQLGFYGGNSSEFHTTDNPTQGSYFDQDEYMRTTVSMFSSLREKYGYKFHILHDVHERL 212
Query: 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303
P +AV+ + + + P E + D E LG + + + +A E + +
Sbjct: 213 FPNQAVQFAKDVEKY--KPYFIEDILPPDQNEWLGQI----RSQTSTPLATGELFNNPME 266
Query: 304 VKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNL 342
K ++ D I ++++ G+ AL++ + A G+ +
Sbjct: 267 WKSLIANRQVDFIRCHVSQIGGITPALKLGSLCAAFGVRI 306
>pdb|3DFH|A Chain A, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
pdb|3DFH|B Chain B, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
pdb|3DFH|C Chain C, Crystal Structure Of Putative Mandelate Racemase MUCONATE
Lactonizing Enzyme From Vibrionales Bacterium Swat-3
Length = 394
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 203
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 204 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 238
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 299 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 348
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAV 321
Query: 349 ETRL 352
T L
Sbjct: 322 NTHL 325
>pdb|3R25|A Chain A, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|B Chain B, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|C Chain C, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|D Chain D, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|E Chain E, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|F Chain F, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|G Chain G, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
pdb|3R25|H Chain H, Crystal Structure Of Enolase Superfamily Member From
Vibrionales Bacterium Complexed With Mg And Glycerol In
The Active Site
Length = 401
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 203
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 204 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 238
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 299 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 348
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCPPDMTPIGAAV 321
Query: 349 ETRL 352
T L
Sbjct: 322 NTHL 325
>pdb|3SBF|A Chain A, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|B Chain B, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|C Chain C, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
pdb|3SBF|D Chain D, Crystal Structure Of The Mutant P311a Of Enolase
Superfamily Member From Vibrionales Bacterium Complexed
With Mg And D-Arabinonate
Length = 401
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 52/244 (21%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEA------AELASKYRKQ 203
+ V+MAL D AK MPL +LFGG S IP+ + A + +L + ++
Sbjct: 93 SGVDMALWDIKAKLAGMPLHQLFGGKSRD-----AIPVYTHATSDTMEGIYDLVEGFLEK 147
Query: 204 GFTTLKLKVG------------------------KNLKEDIEVLRAIRAVHPDSSFIL-D 238
G+ ++ ++G + + + + +++R + + IL D
Sbjct: 148 GYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGNQFHILHD 207
Query: 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298
+E P +A++ +++ + P E + + E L ++ + + VS+ E
Sbjct: 208 VHERLFPNQAIQFAKEVEQY--KPYFIEDILPPNQTEWLDNI----RSQSSVSLGLGELF 261
Query: 299 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM---------IGGMV 348
+ ++ K ++ D I ++++ G+ AL++ + + G+ + IG V
Sbjct: 262 NNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGHLCQNFGVRIAWHCAPDMTPIGAAV 321
Query: 349 ETRL 352
T L
Sbjct: 322 NTHL 325
>pdb|4IT1|A Chain A, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|B Chain B, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|C Chain C, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
pdb|4IT1|D Chain D, Crystal Structure Of Enolase Pfl01_3283 (target
Efi-502286) From Pseudomonas Fluorescens Pf0-1 With
Bound Magnesium, Potassium And Tartrate
Length = 446
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 125/326 (38%), Gaps = 72/326 (22%)
Query: 79 IRIELSNGCVG----WGEAPVLPHVTAEDQQTAMV----------KASEACEVLKESPAM 124
I IE NG +G +G+AP L + Q+ ++ + V PA
Sbjct: 56 IEIESDNGYIGLGESYGDAPAL--AIQQQVQSQLIGLDPFNLNQLRRIVQTTVAAHKPAS 113
Query: 125 ALGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-------S 176
G A L PG H + +A E+A +D A+ +++PL L GG S
Sbjct: 114 LAG------AELAPGSHASKAVSNAYSAFEVAFLDLQARYLNVPLVDLLGGAVRDEVPFS 167
Query: 177 NTITTDITIPIVSP----------------AEAAELASKYRKQGFTTLKLKVGKNLKE-D 219
+ + SP A+AA + Y GF ++KLK G E +
Sbjct: 168 AYLFFKYAQHVDSPYKPDNWGEALNEQQIVAQAARMIEAY---GFKSIKLKAGTLPPEHE 224
Query: 220 IEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279
+ ++A++ P +D N + + ++ + E L G +E P GL
Sbjct: 225 VACIKALKKAFPGYPLRIDPNGNWSLETSIRMAELL---GDDLQYYEDPT-----PGLEG 276
Query: 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 339
++ + K + G+ +A + D+ ++ V N + I LA G L +
Sbjct: 277 MAELHK-RTGLPLATNMVVTDFDEFRRSVAQN---SVQIVLADHHYWGGLRDTQT----- 327
Query: 340 LNLMIGGMVETRLAMGFAGHLSAGLG 365
+ M +T +G + H ++ LG
Sbjct: 328 ----LAKMCDT-FGLGVSMHSNSHLG 348
>pdb|4FI4|A Chain A, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|B Chain B, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|C Chain C, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
Length = 425
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGV----------SNTITTDITIPIVSPAEAAELASK 199
AAV+MAL D AK MPL++L GG +N T + TI AE A K
Sbjct: 110 AAVDMALWDIKAKLAGMPLYQLLGGACREGVMVYGHANGETIEDTI-----AE----ARK 160
Query: 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
Y+ G+ ++L+ G + L + V D F A +G P E V K +
Sbjct: 161 YQALGYKAIRLQSG------VPGLPSTYGVSGDKMFYEPA-DGNLPTENVWSTSKYLKH- 212
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKD 286
P LFE E LG H+ D
Sbjct: 213 -APKLFEAAR-----EALGDDVHLLHD 233
>pdb|3FXG|A Chain A, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|B Chain B, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|C Chain C, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|D Chain D, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|E Chain E, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|F Chain F, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|G Chain G, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|H Chain H, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
Length = 455
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 9/183 (4%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTDITIPIVSPAEAAELASKYRKQG 204
+ V + +++AL D + K + P++RL GG + + T P + A+A
Sbjct: 130 IAVISVIDLALWDLLGKVRNEPVYRLIGGATKERLDFYCTGPEPTAAKAXGFWGGKVPLP 189
Query: 205 FTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263
F G L++++E LR R AV PD +D +E+++ ++ +
Sbjct: 190 FCPDDGHEG--LRKNVEFLRKHREAVGPDFPIXVDCYXSLNVSYTIELVKACLDLNIN-- 245
Query: 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323
+E+ + DD +G + I + V E S +K+V+G D+I + +
Sbjct: 246 WWEECLSPDDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVXWL 302
Query: 324 GVL 326
G L
Sbjct: 303 GGL 305
>pdb|2P0I|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
Length = 456
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 9/183 (4%)
Query: 146 LKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTDITIPIVSPAEAAELASKYRKQG 204
+ V + +++AL D + K + P++RL GG + + T P + A+A
Sbjct: 130 IAVISVIDLALWDLLGKVRNEPVYRLIGGATKERLDFYCTGPEPTAAKAXGFWGGKVPLP 189
Query: 205 FTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263
F G L++++E LR R AV PD +D +E+++ ++ +
Sbjct: 190 FCPDDGHEG--LRKNVEFLRKHREAVGPDFPIXVDCYXSLNVSYTIELVKACLDLNIN-- 245
Query: 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323
+E+ + DD +G + I + V E S +K+V+G D+I + +
Sbjct: 246 WWEECLSPDDTDGF---ALIKRAHPTVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVXWL 302
Query: 324 GVL 326
G L
Sbjct: 303 GGL 305
>pdb|3VCN|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
pdb|3VCN|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15
Length = 425
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE----LASKYRKQGF 205
AAV+MAL D K +P+++L GG T +T+ + E E A KY+ G+
Sbjct: 110 AAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGETIEDTIAEAVKYKAMGY 166
Query: 206 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265
++L+ G + L + V D F A+ P E + K + P LF
Sbjct: 167 KAIRLQTG------VPGLASTYGVSKDKMFYEPADNDL-PTENIWSTAKY--LNSVPKLF 217
Query: 266 EQ 267
E+
Sbjct: 218 ER 219
>pdb|4GME|A Chain A, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
pdb|4GME|C Chain C, Crystal Structure Of Mannonate Dehydratase (Target
Efi-502209) From Caulobacter Crescentus Cb15 Complexed
With Magnesium And D-Mannonate
Length = 426
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAE----LASKYRKQGF 205
AAV+MAL D K +P+++L GG T +T+ + E E A KY+ G+
Sbjct: 111 AAVDMALWDIKGKVAGLPVYQLLGGACR---TGVTVYGHANGETIEDTIAEAVKYKAMGY 167
Query: 206 TTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265
++L+ G + L + V D F A+ P E + K + P LF
Sbjct: 168 KAIRLQTG------VPGLASTYGVSKDKMFYEPADNDL-PTENIWSTAKY--LNSVPKLF 218
Query: 266 EQ 267
E+
Sbjct: 219 ER 220
>pdb|4G8T|A Chain A, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|B Chain B, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|C Chain C, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
pdb|4G8T|D Chain D, Crystal Structure Of A Glucarate Dehydratase Related
Protein, From Actinobacillus Succinogenes, Target
Efi-502312, With Sodium And Sulfate Bound, Ordered Loop
Length = 464
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G + E+ E + A+ PD+ LD N +
Sbjct: 206 VVRLAEAA-----YEKYGFNDFKLKGGVLDGFEEAEAVTALAKRFPDARITLDPNGAWSL 260
Query: 246 QEAVEVLEKL 255
EAV++ ++L
Sbjct: 261 DEAVKIGKQL 270
>pdb|4HN8|A Chain A, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|B Chain B, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|C Chain C, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|D Chain D, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|E Chain E, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|F Chain F, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|G Chain G, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
pdb|4HN8|H Chain H, Crystal Structure Of A Putative D-Glucarate Dehydratase
From Pseudomonas Mendocina Ymp
Length = 473
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 204 GFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 249
GF KLK G E+ E +RAI+A PD+ LD N + EA+
Sbjct: 219 GFADFKLKGGVXRGAEEXEAIRAIKARFPDARVTLDPNGAWSLDEAI 265
>pdb|3THU|A Chain A, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|B Chain B, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
pdb|3THU|C Chain C, Crystal Structure Of An Enolase From Sphingomonas Sp.
Ska58 (Efi Target Efi-501683) With Bound Mg
Length = 426
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 41/151 (27%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVS----------NTITTDITIPIVSPAEAAELASK 199
AAV+MAL D K +P+++L GG S N T + T+ ++A
Sbjct: 111 AAVDMALWDIKGKIAGLPVYQLLGGASREGVMVYGHANGTTIEDTV---------KVALD 161
Query: 200 YRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-- 257
Y+ QG+ ++L+ G + + + V D F Y+P +A E ++
Sbjct: 162 YQAQGYKAIRLQCG------VPGMASTYGVSKDKYF-------YEPADADLPTENIWNTS 208
Query: 258 --MGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
+ + P LF+ E LG H+ D
Sbjct: 209 KYLRIVPELFKAAR-----ESLGWDVHLLHD 234
>pdb|3BSM|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
Length = 413
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSN 177
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|4F4R|A Chain A, Crystal Structure Of D-Mannonate Dehydratase Homolog From
Chromohalobacter Salexigens (Target Efi-502114), With
Bound Na, Ordered Loop
Length = 426
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSN 177
AAV+MAL D AK+ MPL++L GG S
Sbjct: 110 AAVDMALWDIKAKAAGMPLYQLLGGKSR 137
>pdb|3OW1|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3P93|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3PK7|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3QKE|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3RGT|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
Length = 405
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSN 177
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|3QKF|A Chain A, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|B Chain B, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|C Chain C, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|D Chain D, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|E Chain E, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|F Chain F, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|G Chain G, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|H Chain H, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
Length = 405
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSN 177
AAV+MAL D AK+ MPL++L GG S
Sbjct: 89 AAVDMALWDIKAKAAGMPLYQLLGGKSR 116
>pdb|2POZ|A Chain A, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|B Chain B, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|C Chain C, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|D Chain D, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|E Chain E, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|F Chain F, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|G Chain G, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
pdb|2POZ|H Chain H, Crystal Structure Of A Putative Dehydratase From
Mesorhizobium Loti
Length = 392
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 79/200 (39%), Gaps = 29/200 (14%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGG----VSNTITTDITIPIVSPAEAAELASKYRKQGF 205
+A+E AL D K + +P++ LFGG +P E A + K+G+
Sbjct: 94 SAIEQALWDIKGKCLGVPVYELFGGKIRDRVRAYANGWYGAADTPDEFARAVERPLKEGY 153
Query: 206 TTLKL-----KVGKNLK---------EDIEV----LRAIR-AVHPDSSFILDANEGYKPQ 246
LK +VG L+ E IE+ ++A+R A P+ +D + G
Sbjct: 154 GALKFYPLAQRVGSALQHVTRRSXSAEAIELAYRRVKAVRDAAGPEIELXVDLSGGLTTD 213
Query: 247 EAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306
E + K+ E+ + E+P D L +S ++ + +A E + +K
Sbjct: 214 ETIRFCRKIGELDI--CFVEEPCDPFDNGALKVIS----EQIPLPIAVGERVYTRFGFRK 267
Query: 307 IVKGNLADVINIKLAKVGVL 326
I + +I + G L
Sbjct: 268 IFELQACGIIQPDIGTAGGL 287
>pdb|1BQG|A Chain A, The Structure Of The D-Glucarate Dehydratase Protein From
Pseudomonas Putida
Length = 451
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSFILDANEGYKP 245
+V+ AEAA Y + GF KLK G ED I + A+ PD+ LD N +
Sbjct: 194 VVALAEAA-----YDRYGFKDFKLKGGVLRGEDEIAAVTALSERFPDARITLDPNGAWSL 248
Query: 246 QEAV 249
+EAV
Sbjct: 249 KEAV 252
>pdb|3V4B|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And L-Tartrate
pdb|3V3W|A Chain A, Crystal Structure Of An Enolase From The Soil Bacterium
Cellvibrio Japonicus (Target Efi-502161) With Bound Mg
And Glycerol
Length = 424
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAA-ELASKYRKQGFTTL 208
AA+++AL D AK +MPL++L GG S T ++ E K + +G+ +
Sbjct: 109 AAIDVALWDIKAKLANMPLYQLLGGKSRERILSYTHANGKDLDSTLEAVRKAKDKGYKAI 168
Query: 209 KLKVG 213
+++ G
Sbjct: 169 RVQCG 173
>pdb|3NXL|A Chain A, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|B Chain B, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|C Chain C, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|D Chain D, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
Length = 475
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 202 KQGFTTLKLKVGKNLKED-IEVLRAIRAVHPDSSFILDANEGYKPQEAV 249
+ GF KLK G D E + AI+A PD+ LD N + EAV
Sbjct: 218 RYGFADFKLKGGVXAGADEXEAIAAIKACFPDARATLDPNGAWSLDEAV 266
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
pdb|3DY5|C Chain C, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura
Homomalla
Length = 1066
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 311 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
NLA I KL + + G L I + R + GG+V+ L++G GH++ CFK
Sbjct: 775 NLASAHPIFKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKE 832
Query: 370 IDLDT---PLLLSEDPVLDGYEVSGAVYK 395
++L P L + V D ++ G Y+
Sbjct: 833 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 861
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|B Chain B, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|C Chain C, Crystal Structure Of Delta413-417:gs Lox
pdb|3FG1|D Chain D, Crystal Structure Of Delta413-417:gs Lox
Length = 696
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 311 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
NLA I KL + + G L I + R + GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 370 IDLDT---PLLLSEDPVLDGYEVSGAVYK 395
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
pdb|2FNQ|B Chain B, Insights From The X-Ray Crystal Structure Of Coral 8r-
Lipoxygenase: Calcium Activation Via A C2-Like Domain
And A Structural Basis Of Product Chirality
Length = 699
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 318 IKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--- 374
KL + + G L I + R + GG+V+ L++G GH++ CFK ++L
Sbjct: 416 FKLLQPHIYGVLAIDTIGRKELIG--SGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYHL 473
Query: 375 PLLLSEDPVLDGYEVSGAVYK 395
P L + V D ++ G Y+
Sbjct: 474 PNALKKRGVDDPSKLPGFYYR 494
>pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|2FYM|A Chain A, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|C Chain C, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|D Chain D, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E.
pdb|2FYM|F Chain F, Crystal Structure Of E. Coli Enolase Complexed With The
Minimal Binding Segment Of Rnase E
Length = 431
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 230 HPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVL-FEQPVHRDDWEGLGHVSHIAKD 286
+ D ++L + N+ + +E LE+L + P++ E + DW+G + + + D
Sbjct: 252 YKDGKYVLAGEGNKAFTSEEFTHFLEELTKQ--YPIVSIEDGLDESDWDGFAYQTKVLGD 309
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 344
K + V D + +K+ ++ +A+ I IK ++G L L I++ + +G +I
Sbjct: 310 KIQL-VGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVI 367
>pdb|3H8A|A Chain A, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|B Chain B, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|C Chain C, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
pdb|3H8A|D Chain D, Crystal Structure Of E. Coli Enolase Bound To Its Cognate
Rnase E Recognition Domain
Length = 432
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 230 HPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVL-FEQPVHRDDWEGLGHVSHIAKD 286
+ D ++L + N+ + +E LE+L + P++ E + DW+G + + + D
Sbjct: 253 YKDGKYVLAGEGNKAFTSEEFTHFLEELTKQ--YPIVSIEDGLDESDWDGFAYQTKVLGD 310
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 344
K + V D + +K+ ++ +A+ I IK ++G L L I++ + +G +I
Sbjct: 311 KIQL-VGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVI 368
>pdb|4IL0|A Chain A, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|B Chain B, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|C Chain C, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|D Chain D, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|E Chain E, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|F Chain F, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|G Chain G, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
pdb|4IL0|H Chain H, Crystal Structure Of Glucdrp From E. Coli K-12 Mg1655 (efi
Target Efi- 506058)
Length = 466
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEA++ + GF KLK G +++I+ +RA++ PD+ +D N +
Sbjct: 207 VVRLAEASQ-----DRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLL 261
Query: 246 QEAVEVLEKLYEM 258
EA+ + + L ++
Sbjct: 262 DEAISLCKGLNDV 274
>pdb|4GYP|C Chain C, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|D Chain D, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 458
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEA++ + GF KLK G +++I+ +RA++ PD+ +D N +
Sbjct: 199 VVRLAEASQ-----DRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLL 253
Query: 246 QEAVEVLEKLYEM 258
EA+ + + L ++
Sbjct: 254 DEAISLCKGLNDV 266
>pdb|3VC5|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Phosphate
pdb|3VC6|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833 Complexed With
Magnesium And Formate
pdb|4DHG|A Chain A, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|B Chain B, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|C Chain C, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
pdb|4DHG|D Chain D, Crystal Structure Of Enolase Tbis_1083(Target Efi-502310)
From Thermobispora Bispora Dsm 43833, An Open Loop
Conformation
Length = 441
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 25/131 (19%)
Query: 147 KVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITI----------------PIVS 189
+V AA E+A +D K+ P+ L GG V + + + P +
Sbjct: 129 RVFAAFEVACLDIQGKAAGRPVADLLGGKVRDAVPYSAYLFYKWAGHPGKPEDRFGPALD 188
Query: 190 P----AEAAELASKYRKQGFTTLKLKVGKNLKE-DIEVLRAIRAVHPDSSFILDANEGYK 244
P A+A L +Y GF ++KLK G E + E ++A+R P LD N +
Sbjct: 189 PDGIVAQARLLIGEY---GFRSIKLKGGVFPPEQEAEAIQALRDAFPGLPLRLDPNAAWT 245
Query: 245 PQEAVEVLEKL 255
+ ++ V L
Sbjct: 246 VETSIRVGRAL 256
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|B Chain B, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|C Chain C, Crystal Structure Of Delta413-417:gs I805w Lox
pdb|3FG3|D Chain D, Crystal Structure Of Delta413-417:gs I805w Lox
Length = 696
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 311 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
NLA I KL + + G L I + R GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELWG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 370 IDLDT---PLLLSEDPVLDGYEVSGAVYK 395
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|1JCT|A Chain A, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
pdb|1JCT|B Chain B, Glucarate Dehydratase, N341l Mutant Orthorhombic Form
Length = 446
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 246 QEAVEVLEKL 255
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|1EC7|A Chain A, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|B Chain B, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|C Chain C, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC7|D Chain D, E. Coli Glucarate Dehydratase Native Enzyme
pdb|1EC8|A Chain A, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|B Chain B, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|C Chain C, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC8|D Chain D, E. Coli Glucarate Dehydratase Bound To Product 2,3-
Dihydroxy-5-Oxo-Hexanedioate
pdb|1EC9|A Chain A, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|B Chain B, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|C Chain C, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1EC9|D Chain D, E. Coli Glucarate Dehydratase Bound To Xylarohydroxamate
pdb|1ECQ|A Chain A, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|B Chain B, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|C Chain C, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|1ECQ|D Chain D, E. Coli Glucarate Dehydratase Bound To 4-Deoxyglucarate
pdb|4GYP|A Chain A, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
pdb|4GYP|B Chain B, Crystal Structure Of The Heterotetrameric Complex Of Glucd
And Glucdrp From E. Coli K-12 Mg1655 (Efi Target
Efi-506058)
Length = 446
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 246 QEAVEVLEKL 255
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|3PWG|A Chain A, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|B Chain B, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|C Chain C, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
pdb|3PWG|D Chain D, Crystal Structure Of The Mutant S29g.P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D- Glucarate
Length = 446
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 246 QEAVEVLEKL 255
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|3PWI|A Chain A, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
pdb|3PWI|B Chain B, Crystal Structure Of The Mutant P34a Of D-Glucarate
Dehydratase From Escherichia Coli Complexed With Product
5-Keto-4-Deoxy-D-Glucarate
Length = 446
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 246 QEAVEVLEKL 255
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|1JDF|A Chain A, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|B Chain B, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|C Chain C, Glucarate Dehydratase From E.Coli N341d Mutant
pdb|1JDF|D Chain D, Glucarate Dehydratase From E.Coli N341d Mutant
Length = 446
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245
+V AEAA Y K GF KLK G +E+ E + A+ P + LD N +
Sbjct: 188 VVRLAEAA-----YEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSL 242
Query: 246 QEAVEVLEKL 255
EA+++ + L
Sbjct: 243 NEAIKIGKYL 252
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|B Chain B, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|C Chain C, Crystal Structure Of Delta413-417:gs I805a Lox
pdb|3FG4|D Chain D, Crystal Structure Of Delta413-417:gs I805a Lox
Length = 696
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 311 NLADVINI-KLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369
NLA I KL + + G L I + R GG+V+ L++G GH++ CFK
Sbjct: 405 NLASAHPIFKLLQPHIYGVLAIDTIGRKELAG--SGGIVDQSLSLGGGGHVTFMEKCFKE 462
Query: 370 IDLDT---PLLLSEDPVLDGYEVSGAVYK 395
++L P L + V D ++ G Y+
Sbjct: 463 VNLQDYHLPNALKKRGVDDPSKLPGFYYR 491
>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
pdb|4EQW|B Chain B, Crystal Structure Of The Y361f, Y419f Mutant Of
Staphylococcus Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQS|B Chain B, Crystal Structure Of The Y419f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQR|B Chain B, Crystal Structure Of The Y361f Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
pdb|4EMW|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Etvc-Coa
Length = 436
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
pdb|4EQX|B Chain B, Crystal Structure Of The C43s Mutant Of Staphylococcus
Aureus Coadr
Length = 437
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM3|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Mevs-Coa
pdb|4EM4|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
pdb|4EM4|B Chain B, Crystal Structure Of Staphylococcus Aureus Bound With The
Covalent Inhibitor Pethyl-Vs-Coa
Length = 437
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 130 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 180
>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
pdb|1YQZ|B Chain B, Structure Of Coenzyme A-Disulfide Reductase From
Staphylococcus Aureus Refined At 1.54 Angstrom
Resolution
Length = 438
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 9/60 (15%)
Query: 214 KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
+NL++ + + I+A D ++ A GY ++EVLE LYE G+ P L +HR D
Sbjct: 131 RNLEDTDAIDQFIKANQVDKVLVVGA--GYV---SLEVLENLYERGLHPTL----IHRSD 181
>pdb|3P0W|A Chain A, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|B Chain B, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|C Chain C, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
pdb|3P0W|D Chain D, Crystal Structure Of D-Glucarate Dehydratase From
Ralstonia Solanacearum Complexed With Mg And D-Glucarate
Length = 470
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 202 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAV 249
+ GF KLK G E++E + AI+A P + LD N + EA+
Sbjct: 214 RYGFADFKLKGGVMPGAEEMEAIAAIKARFPHARVTLDPNGAWSLNEAI 262
>pdb|4HNL|A Chain A, Crystal Structure Of Enolase Egbg_01401 (Target
Efi-502226) From Enterococcus Gallinarum Eg2
Length = 421
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 150 AAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRK------Q 203
+ ++MAL D + MPL++L GG + T IP + A A L Y +
Sbjct: 113 SGIDMALWDIKGQLADMPLYQLLGGKART-----AIPAYTHAVADNLDDLYHEIDRFLAA 167
Query: 204 GFTTLKLKVG 213
G+ ++ ++G
Sbjct: 168 GYRYIRCQLG 177
>pdb|4G7F|A Chain A, Crystal Structure Of Enolase From Trypanosoma Cruzi
Length = 429
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322
V E P +DD++G ++ K K V V D + ++ +K ++ + + +K+ +
Sbjct: 288 VSLEDPYDQDDFDGFAGITEALKGKAQV-VGDDLTVTNVSRIKTAIEKKACNSLLLKINQ 346
Query: 323 VGVLG-ALEIIEVVRASGLNLMI 344
+G + A+E + ++G ++M+
Sbjct: 347 IGTITEAIEASKFCMSNGWSVMV 369
>pdb|1EBG|A Chain A, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBG|B Chain B, Chelation Of Ser 39 To Mg2+ Latches A Gate At The Active
Site Of Enolase: Structure Of The Bis(Mg2+) Complex Of
Yeast Enolase And The Intermediate Analog
Phosphonoacetohydroxamate At 2.1 Angstroms Resolution
pdb|1EBH|A Chain A, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1EBH|B Chain B, Octahedral Coordination At The High Affinity Metal Site In
Enolase; Crystallographic Analysis Of The Mg++-Enzyme
From Yeast At 1.9 Angstroms Resolution
pdb|1ONE|A Chain A, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|1ONE|B Chain B, Yeast Enolase Complexed With An Equilibrium Mixture Of 2'-
Phosphoglyceate And Phosphoenolpyruvate
pdb|2ONE|A Chain A, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2ONE|B Chain B, Asymmetric Yeast Enolase Dimer Complexed With Resolved 2'-
Phosphoglycerate And Phosphoenolpyruvate
pdb|2AL1|A Chain A, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
pdb|2AL1|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1P48|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P48|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1P43|A Chain A, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
pdb|1P43|B Chain B, Reverse Protonation Is The Key To General Acid-Base
Catalysis In Enolase
Length = 436
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1ELS|A Chain A, Catalytic Metal Ion Binding In Enolase: The Crystal
Structure Of Enolase-Mn2+-Phosphonoacetohydroxamate
Complex At 2.4 Angstroms Resolution
pdb|1NEL|A Chain A, Fluoride Inhibition Of Yeast Enolase: Crystal Structure Of
The Enolase-mg2+-f--pi Complex At 2.6-angstroms
Resolution
pdb|3ENL|A Chain A, Refined Structure Of Yeast Apo-Enolase At 2.25 Angstroms
Resolution
pdb|4ENL|A Chain A, Crystal Structure Of Holoenzyme Refined At 1.9 Angstroms
Resolution: Trigonal-Bipyramidal Geometry Of The Cation
Binding Site
pdb|5ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|6ENL|A Chain A, Inhibition Of Enolase: The Crystal Structures Of Enolase-
Ca2+-Phosphoglycerate And Enolase-Zn2+-Phosphoglycolate
Complexes At 2.2-Angstroms Resolution
pdb|7ENL|A Chain A, Mechanism Of Enolase: The Crystal Structure Of
Enolase-Mg2+- Phosphoglycerate(Slash)
Phosphoenolpyruvate Complex At 2.2-Angstroms Resolution
Length = 436
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2AL2|B Chain B, Crystal Structure Analysis Of Enolase Mg Subunit Complex
At Ph 8.0
Length = 436
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|1L8P|A Chain A, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|B Chain B, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|C Chain C, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
pdb|1L8P|D Chain D, Mg-phosphonoacetohydroxamate Complex Of S39a Yeast Enolase
1
Length = 436
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD+ + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADDLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2XGZ|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
pdb|2XGZ|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321r Mutant Of Yeast Enolase 1
Length = 443
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADRLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2XH0|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
pdb|2XH0|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n Q167k D321r Mutant Of Yeast
Enolase 1
Length = 443
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLA 321
V E P DDWE H A G+ + AD + + + ++ AD + +K+
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVADRLTVTNPKRIATAIEKKAADALLLKVN 347
Query: 322 KVGVLG-ALEIIEVVRASGLNLMI 344
++G L +++ + A+G +M+
Sbjct: 348 QIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2XH7|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
pdb|2XH7|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI---VKGNLADVINIK 319
V E P DDWE H A G+ + AD ++ + K+I ++ AD + +K
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVAD--ALTVTNPKRIATAIEKKAADALLLK 345
Query: 320 LAKVGVLG-ALEIIEVVRASGLNLMI 344
+ ++G L +++ + A+G +M+
Sbjct: 346 VNQIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2XH4|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
pdb|2XH4|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39a D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI---VKGNLADVINIK 319
V E P DDWE H A G+ + AD ++ + K+I ++ AD + +K
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVAD--ALTVTNPKRIATAIEKKAADALLLK 345
Query: 320 LAKVGVLG-ALEIIEVVRASGLNLMI 344
+ ++G L +++ + A+G +M+
Sbjct: 346 VNQIGTLSESIKAAQDSFAAGWGVMV 371
>pdb|2XH2|A Chain A, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|B Chain B, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|C Chain C, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
pdb|2XH2|D Chain D, Engineering The Enolase Active Site Pocket: Crystal
Structure Of The S39n D321a Mutant Of Yeast Enolase 1
Length = 443
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI---VKGNLADVINIK 319
V E P DDWE H A G+ + AD ++ + K+I ++ AD + +K
Sbjct: 292 VSIEDPFAEDDWEAWSHFFKTA----GIQIVAD--ALTVTNPKRIATAIEKKAADALLLK 345
Query: 320 LAKVGVLG-ALEIIEVVRASGLNLMI 344
+ ++G L +++ + A+G +M+
Sbjct: 346 VNQIGTLSESIKAAQDSFAAGWGVMV 371
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,175,830
Number of Sequences: 62578
Number of extensions: 434851
Number of successful extensions: 1487
Number of sequences better than 100.0: 177
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 1230
Number of HSP's gapped (non-prelim): 205
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)