BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015161
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O34508|AEEP_BACSU L-Ala-D/L-Glu epimerase OS=Bacillus subtilis (strain 168) GN=ykfB
PE=1 SV=1
Length = 366
Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 186/358 (51%), Gaps = 13/358 (3%)
Query: 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV 109
R E + VPL PF A + E+V +RI +G VGWGEAP +T + +
Sbjct: 5 RIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSI-- 62
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLP-GHQFASQLKVRAAVEMALIDAVAKSVSMPL 168
S VLK PA+ S+ G A L H + +AAVEMAL D A+ +PL
Sbjct: 63 -ESAIHHVLK--PALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPL 119
Query: 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIR 227
+++ GG +T+ TD T+ + SP E A A Y KQGF TLK+KVGK ++ DI ++ IR
Sbjct: 120 YQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIR 179
Query: 228 A-VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286
V LDAN+G++P+EAV + K+ + G+ L EQPVH+DD GL V+ D
Sbjct: 180 KRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVT----D 235
Query: 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIG 345
+ ADES + ++++ AD+INIKL K G+ GA +I + A G+ M+G
Sbjct: 236 ATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVG 295
Query: 346 GMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403
M+ET+L + A H +A D D PL+L D G SG+ G G
Sbjct: 296 SMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLG 353
>sp|Q9WXM1|AEEP_THEMA L-Ala-D/L-Glu epimerase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=TM_0006 PE=1 SV=1
Length = 345
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 173/319 (54%), Gaps = 10/319 (3%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122
PF I S + NV + I L +G G+GEA V E + + + E++
Sbjct: 19 PFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGID 78
Query: 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTD 182
+F + L F S ++AAV+ A +DA+++ + + L GG + I TD
Sbjct: 79 VRNYARIFEITDRLFG---FPS---LKAAVQFATLDALSQELGTQVCYLLGGKRDEIETD 132
Query: 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG 242
T+ I + + A K ++GF +K+KVG+NLKEDIE + I V + +I+DAN G
Sbjct: 133 KTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMG 192
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302
Y +EAVE +Y+ G+ ++EQPV R+D EGL V + VAADES R+
Sbjct: 193 YTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSP----FPVAADESARTKF 248
Query: 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362
DV ++VK D +NIKL K G+ AL I+E+ +SGL LMIG M E+ L + + H +
Sbjct: 249 DVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFAL 308
Query: 363 GLGCFKFIDLDTPLLLSED 381
G G F+F DLD+ L+L E+
Sbjct: 309 GTGAFEFHDLDSHLMLKEE 327
>sp|Q97MK4|AEEP_CLOAB L-Ala-D/L-Glu epimerase OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=CA_C0192 PE=1 SV=1
Length = 358
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 116/345 (33%), Positives = 183/345 (53%), Gaps = 15/345 (4%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
L+VPL PF A ++ V +V ++I G VG+G A VT + ++ ++ +
Sbjct: 11 LSVPLKKPFKTAVRSVNSVNDVVVKIITDTGNVGFGSAASTGLVTGDITES--IEGAINN 68
Query: 116 EVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV 175
+ + M + ++ L + +AAV++AL D + PL++L GG
Sbjct: 69 YIKRSIVGMDIEDFEAILIKL--DNCIVGNTSAKAAVDIALYDLYGQRYGAPLYKLLGGF 126
Query: 176 SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSS 234
N + TDITI + SP E + + K G+ TLK+KVGKN K DI+ +R IR A+ + +
Sbjct: 127 RNKLETDITISVNSPEEMSRDSVDAVKLGYKTLKIKVGKNPKLDIKRMREIRKAIGYEVN 186
Query: 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294
+DAN+G++P+EA+ L ++ G+ L EQPV + EGL V+ D + V A
Sbjct: 187 LRIDANQGWQPKEAIRALNEIENEGLKIELVEQPVKAWNLEGLKMVT----DNVNIPVMA 242
Query: 295 DESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLA 353
DES S D ++++ D+INIKL K G+ AL+I + G+ M+G M+E +++
Sbjct: 243 DESVFSPKDAARVMEMRACDLINIKLMKTGGIHNALKICALAEVYGMECMLGCMLEGKVS 302
Query: 354 MGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTN 398
+ A HL+A IDLD P+L S D V V GA+Y +N
Sbjct: 303 VTAAVHLAAAKRIITKIDLDGPVLCSRDDV-----VGGAMYDNSN 342
>sp|O33949|CATB2_ACILW Muconate cycloisomerase 1-2 OS=Acinetobacter lwoffii GN=catB2 PE=3
SV=2
Length = 385
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 177/380 (46%), Gaps = 30/380 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQ 105
V ++ E ++VP I P ++ + ++ V +RI ++G VG GE + + ++
Sbjct: 6 VKIESVETILVDVPTIRPHRLSVATMNCQTLVLVRIRCADGVVGVGEGTTIGGLAYGEES 65
Query: 106 TAMVKA---SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAK 162
+K + +LK A G+ + GL G++FA R+AVE AL DA A+
Sbjct: 66 PESIKVNIDTYFAPLLKGLDATRPGAAMATLRGLFQGNRFA-----RSAVETALFDAQAQ 120
Query: 163 SVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K 214
+ +PL LFGG V+ T+ + T + AE A ++R KLK+G +
Sbjct: 121 RLGVPLSELFGGRIRDSVDVAWTLASGDTTRDIDEAERVFEAKRHR-----VFKLKIGSR 175
Query: 215 NLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273
L +D+ + AI +A+ +D N+ + EA+ ++ + V L EQP+ ++
Sbjct: 176 ALADDVAHVVAIQKALQGRGEVRVDVNQAWTESEAIWAGKRFADASV--ALIEQPIAAEN 233
Query: 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEII 332
GL ++ +A+ V + ADE+ D + ADV +K+A+ G L GA +
Sbjct: 234 RAGLKRLTDLAQ----VPIMADEALHGPADAFALASARAADVFAVKIAQSGGLSGAANVA 289
Query: 333 EVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSG 391
+ A+ ++L G M+E + + L + G K+ +L PLLL+E+ + +
Sbjct: 290 AIALAANIDLYGGTMLEGAVGTIASAQLFSTFGELKWGTELFGPLLLTEEILTEPLRYEN 349
Query: 392 AVYKFTNARGHGGFLHWDNI 411
V G G L WD I
Sbjct: 350 FVLHLPQGPGLGITLDWDKI 369
>sp|Q43931|CATB_ACIAD Muconate cycloisomerase 1 OS=Acinetobacter sp. (strain ADP1)
GN=catB PE=3 SV=2
Length = 370
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 166/340 (48%), Gaps = 31/340 (9%)
Query: 56 LNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEAC 115
+++P I P ++ + + V I+I +G VGWGEA + + ++ VKA+
Sbjct: 10 VDIPTIRPHKLSVTTMQTQTLVLIKIITEDGIVGWGEATTIGGLNYGEESPESVKANIDT 69
Query: 116 E----VLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRL 171
+L + + ++ + G++FA + A++ AL++ AK +++P+ L
Sbjct: 70 YFKPLLLSIKAPLNVAQTLKLIRKSINGNRFA-----KCAIQTALLEIQAKRLNVPVSEL 124
Query: 172 FGGVSNTITTDITIPIV-------SPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVL 223
GG +P++ + + AE + T KLK+G N L+ D++ +
Sbjct: 125 LGGRIRD-----RLPVLWTLASGDTDKDIAEAKKMIELKRHNTFKLKIGSNPLQHDVDHV 179
Query: 224 RAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
AI +A+ P+ S +D N + E V+ +++L + G+ L EQP ++ + L ++
Sbjct: 180 IAIKKALGPEISVRVDVNRAWSELECVKGIQQLQDGGID--LIEQPCAIENTDALARLTA 237
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLN 341
+F V++ ADE D +I K + ADV +K+ + G++ A E+ ++ R +G++
Sbjct: 238 ----RFDVAIMADEVLTGPDSAYRIAKKSGADVFAVKVEQSGGLIEACEVAKIARLAGIS 293
Query: 342 LMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSE 380
L G M+E + + H + +F +L PLLL++
Sbjct: 294 LYGGTMLEGPVGSIASAHAFSTFETLEFGTELFGPLLLTQ 333
>sp|P51981|AEEP_ECOLI L-Ala-D/L-Glu epimerase OS=Escherichia coli (strain K12) GN=ycjG
PE=1 SV=2
Length = 321
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 96/325 (29%), Positives = 145/325 (44%), Gaps = 31/325 (9%)
Query: 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVL 118
PL PF IA + V + G G GE P D AS +++
Sbjct: 12 PLHTPFVIARGSRSEARVVVV-ELEEEGIKGTGECTPYPRYGESD-------ASVMAQIM 63
Query: 119 KESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GVSN 177
P + G + +LP R A++ AL D A+ L L G +
Sbjct: 64 SVVPQLEKGLTREELQKILPAG------AARNALDCALWDLAARRQQQSLADLIGITLPE 117
Query: 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237
T+ T T+ I +P + A AS + G LK+K+ +L E + AIR PD++ I+
Sbjct: 118 TVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLIS--ERMVAIRTAVPDATLIV 175
Query: 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES 297
DANE ++ + + L ++GV + EQP+ D L + H + + ADES
Sbjct: 176 DANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENFIH------PLPICADES 227
Query: 298 CRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGF 356
C + ++K + KG +++NIKL K G L AL + RA G +LM+G M+ T A+
Sbjct: 228 CHTRSNLKAL-KGRY-EMVNIKLDKTGGLTEALALATEARAQGFSLMLGCMLCTSRAISA 285
Query: 357 AGHLSAGLGCFKFIDLDTPLLLSED 381
A L + F DLD P L+ D
Sbjct: 286 ALPLVPQVS---FADLDGPTWLAVD 307
>sp|O34514|MENC_BACSU o-succinylbenzoate synthase OS=Bacillus subtilis (strain 168)
GN=menC PE=1 SV=1
Length = 371
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 151/314 (48%), Gaps = 23/314 (7%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAED 103
+++++ L++ L PF + L + + + + ++G GWGE P T E
Sbjct: 2 IEIEKITLYHLSMNLKKPFKNSIETLQERKFLIVEAIDTSGVTGWGEVSAFSSPWYTEET 61
Query: 104 QQTAMVKASEACEVLKES--PAMALGSVFGVVAGLLPG-HQFASQLKVRAAVEMALIDAV 160
T + +LK+ P + +G F + + ++ +A +E A+ D
Sbjct: 62 IGTCL-------HMLKDFFIPNV-VGREFNHPSEVPDSLARYKGNRMAKAGLESAVWDIY 113
Query: 161 AKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI 220
AK + L GG + + + + + + + Y+K+G+ +K+K+ +D+
Sbjct: 114 AKKKGVSLAEALGGTRDKVPAGVVVGLAPLDDMLKEIESYQKEGYQRIKIKIQPG--QDV 171
Query: 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280
E+++AIR+ P + DAN Y+ ++ + L++L + + ++ EQP+ DD H+
Sbjct: 172 ELVKAIRSRFPTIPLMADANSSYELKD-ISRLKELDDYHL--MMIEQPLQADDIVDHRHL 228
Query: 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASG 339
K ++ DES S+DD ++ ++ +INIK ++VG L AL+I ++ +
Sbjct: 229 QKHLK----TAICLDESICSVDDARRAIELGSCKIINIKPSRVGGLTEALKIHDLCKEHH 284
Query: 340 LNLMIGGMVETRLA 353
+ + GGM+ET ++
Sbjct: 285 MQVWCGGMLETGIS 298
>sp|P42428|TFDD2_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=tfdDII PE=3 SV=2
Length = 372
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 28/319 (8%)
Query: 76 NVAIRIELSNGCVGWGEA--PVLPHVTAEDQQT--AMVKASEACEVLKESPAMALGSVFG 131
+V IR+ G VG GE+ P P + + + A + A V+ E PA+ +
Sbjct: 23 SVLIRLHTKGGIVGIGESITPCGPWWSGDSVEAIQATINHYLAPLVVGE-PALDASRIMA 81
Query: 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPA 191
+ G + G+ FA +A +EMAL+DAV K V P+ L GG + P+ +
Sbjct: 82 KLHGRVAGNAFA-----KAGIEMALLDAVGKIVDAPIHVLLGGRFRD-RLSVAWPLATGD 135
Query: 192 EAAELASKYR-----KQGFTTLKLKVGK-NLKEDIEVLRAI-RAVHPDSSFILDANEGYK 244
E+ +R K G KLK+G L +D+ AI + + +S +D NE +
Sbjct: 136 VNQEVDEAFRMLEAGKAG--AFKLKMGALPLAQDLRRALAIAKELEGKASLRVDPNEAWD 193
Query: 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304
+ L L GV + EQPV R + + + + A+ + DE +SL D
Sbjct: 194 EPTTMRALAPLEAAGVE--IIEQPVARWNLDAMARIHRQARSMLLI----DEGVQSLHDA 247
Query: 305 KKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363
++VK A ++++K+ K G + A + ++ A G+++ +G +ET + L+A
Sbjct: 248 SEVVKRAAAGLVSLKIMKTGGMRPARAMADIANAGGMHVYMGTFLETSIGTAANMQLAAS 307
Query: 364 LGCFKF-IDLDTPLLLSED 381
+ + ++ PLL+ ED
Sbjct: 308 IESLPYGGEVIGPLLIEED 326
>sp|P95608|CATB_RHOOP Muconate cycloisomerase 1 OS=Rhodococcus opacus GN=catB PE=1 SV=1
Length = 373
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 32/345 (9%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA--PVLPHVTAEDQQTAMV 109
E L+VPL+ P AT+ + + + + + G G+GE P P E +T
Sbjct: 10 ETTILDVPLVRPHKFATTSMTAQPLLLVAVTTAGGVTGYGEGVVPGGPWWGGESVETMQA 69
Query: 110 KASEACEVLKESPAMALGSVFGVVAGLLPGHQ--FASQLKVRAAVEMALIDAVAKSVSMP 167
V + + LG + G++P + A+ +AAV++AL DA A+S+ +P
Sbjct: 70 I------VERYIVPVLLGRGVDEITGIMPDIERVVANARFAKAAVDVALHDAWARSLGVP 123
Query: 168 LWRLFGGVSNTITTDITIPI-VSPA-----EAAELASKYRKQGFTTLKLKVGKNLKEDIE 221
+ L GG + D+T + +PA EA +L R F KLK+G L ++
Sbjct: 124 VHTLLGGAFRK-SVDVTWALGAAPAEEIIEEALDLVESKRHFSF---KLKMGA-LDPAVD 178
Query: 222 VLRAI---RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLG 278
R + +A+ + +D N + A++ + +L E GV L EQP + E L
Sbjct: 179 TARVVQIAQALQGKAGVRIDVNARWDRLTALKYVPRLVEGGVE--LIEQPTPGEQLEVLA 236
Query: 279 HVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL-GALEIIEVVRA 337
++ + V V ADES ++ D ++ + ADVI +K K G L + E++ + +A
Sbjct: 237 ELNRLVP----VPVMADESVQTPHDALEVARRGAADVIALKTTKCGGLQKSREVVAIAKA 292
Query: 338 SGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 381
+G+ +E + + H + F +L PLL SE+
Sbjct: 293 AGIACHGATSIEGPIGTAASIHFACAEPGIDFGTELFGPLLFSEE 337
>sp|P27099|TCBD_PSESQ Chloromuconate cycloisomerase OS=Pseudomonas sp. (strain P51)
GN=tcbD PE=1 SV=1
Length = 370
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 122/249 (48%), Gaps = 27/249 (10%)
Query: 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----- 188
A +L L +AA+++AL D A+++++ + L GG T +IPI
Sbjct: 86 ARVLMDRAVTGNLSAKAAIDIALHDLKARALNLSIADLIGGTMRT-----SIPIAWTLAS 140
Query: 189 -----SPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANE 241
A E+ R F K+K+G + +D+E +R+I +AV +S +D N+
Sbjct: 141 GDTARDIDSALEMIETRRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQ 197
Query: 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSL 301
G+ Q A + +L E GV L EQPV R ++ L ++ ++ GV++ ADES SL
Sbjct: 198 GWDEQTASIWIPRLEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSL 251
Query: 302 DDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360
++ + + D ++KL + G+ L++ V A+G++ G M+++ + A H+
Sbjct: 252 SSAFELARDHAVDAFSLKLCNMGGIANTLKVAAVAEAAGISSYGGTMLDSTVGTAAALHV 311
Query: 361 SAGLGCFKF 369
A L +
Sbjct: 312 YATLPSLPY 320
>sp|Q9RNZ9|TFDD_DELAC Chloromuconate cycloisomerase OS=Delftia acidovorans GN=tfdD PE=1
SV=2
Length = 370
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 28/250 (11%)
Query: 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAA 194
L +AA+++AL D A+++++ + L GG T +IPI A
Sbjct: 97 NLSAKAAIDIALHDLKARALNLSIADLIGG-----TMRKSIPIAWTLASGDTARDIDSAL 151
Query: 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVL 252
E+ R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A +
Sbjct: 152 EMIEARRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDKASVRVDVNQGWDEQTASIWI 208
Query: 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312
+L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ +
Sbjct: 209 PRLEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDRA 262
Query: 313 ADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-I 370
D ++KL + G+ L++ + A+G++ G M+++ + A H+ A L +
Sbjct: 263 VDAFSLKLCNMGGIANTLKVAAIAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGC 322
Query: 371 DLDTPLLLSE 380
+L P +LS+
Sbjct: 323 ELIGPWVLSD 332
>sp|P83763|CBNB_CUPNE Chloromuconate cycloisomerase CbnB OS=Cupriavidus necator GN=cbnB
PE=3 SV=1
Length = 370
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 125/250 (50%), Gaps = 28/250 (11%)
Query: 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIV----------SPAEAA 194
L +AA+++AL D A+++++ + L GG T +IPI A
Sbjct: 97 NLSAKAAIDIALHDLKARALNLSIADLIGG-----TMRKSIPIAWTLASGDTARDIDSAL 151
Query: 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVL 252
E+ R F K+K+G + +D+E +R+I +AV +S +D N+G+ Q A +
Sbjct: 152 EMIEARRHNRF---KVKLGARTPAQDLEHIRSIVKAVGDKASVRVDVNQGWDEQTASIWI 208
Query: 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312
+L E GV L EQPV R ++ L ++ ++ GV++ ADES SL ++ +
Sbjct: 209 PRLEEAGVE--LVEQPVPRANFGALRRLT----EQNGVAILADESLSSLSSAFELARDRA 262
Query: 313 ADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-I 370
D ++KL + G+ L++ + A+G++ G M+++ + A H+ A L +
Sbjct: 263 VDAFSLKLCNMGGIANTLKVAAIAEAAGISSYGGTMLDSTVGTAAALHVYATLPSLPYGC 322
Query: 371 DLDTPLLLSE 380
+L P +LS+
Sbjct: 323 ELIGPWVLSD 332
>sp|P08310|CATB_PSEPU Muconate cycloisomerase 1 OS=Pseudomonas putida GN=catB PE=1 SV=4
Length = 375
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 153/335 (45%), Gaps = 30/335 (8%)
Query: 63 PFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA---SEACEVLK 119
P +A + V IR+ S+G G GEA + + + +KA + L
Sbjct: 23 PHKLAMHTMQTQTLVLIRVRCSDGVEGIGEATTIGGLAYGYESPEGIKANIDAHLAPALV 82
Query: 120 ESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG----- 174
PA + + + L G+ FA ++ +E AL+DA K + +P+ L GG
Sbjct: 83 GLPADNINAAMLKLDKLAKGNTFA-----KSGIESALLDAQGKRLGLPVSELLGGRVRDS 137
Query: 175 --VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHP 231
V+ T+ + T + AEA + R + F KLK+G N L +D++ + AI+
Sbjct: 138 LEVAWTLASGDTARDI--AEAQHMLEIRRHRVF---KLKIGANPLAQDLKHVVAIKRELG 192
Query: 232 DSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290
DS+ + +D N+ + +A+ + L + G+ L EQP+ R + G ++ +
Sbjct: 193 DSASVRVDVNQYWDESQAIRACQVLGDNGID--LIEQPISRINRSGQVRLNQ----RSPA 246
Query: 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGA-LEIIEVVRASGLNLMIGGMVE 349
+ ADES S++D + A + +K+AK G A L ++ A+G+ L G M+E
Sbjct: 247 PIMADESIESVEDAFSLAADGAASIFALKIAKNGGPRAVLRTAQIAEAAGIALYGGTMLE 306
Query: 350 TRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPV 383
+ + H L + +L PLLL+E+ V
Sbjct: 307 GSIGTLASAHAFLTLRQLTWGTELFGPLLLTEEIV 341
>sp|O33946|CATB1_ACILW Muconate cycloisomerase 1-1 OS=Acinetobacter lwoffii GN=catB1 PE=3
SV=1
Length = 379
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 165/353 (46%), Gaps = 36/353 (10%)
Query: 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVT-AED 103
+V ++R E +++P I P ++ + + + +++ ++G VG GE + + +
Sbjct: 3 SVTIERIETCLVDLPTIRPHKLSVATMYGQTLMLVKVYCTDGAVGIGEGTTIAGMAYGPE 62
Query: 104 QQTAMVKASEA--CEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVA 161
AM A +A L A + ++ + L+ + FA ++A+E AL+DA
Sbjct: 63 SPEAMKLAIDAYFAPALVGKDATRIQTLMAHLGKLVKINHFA-----KSALETALLDAHG 117
Query: 162 KSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG- 213
K + + + L GG V+ T+ + T + AEA ++ R F KLK+G
Sbjct: 118 KRLGVAVSELLGGRRRERLPVAWTLASGDTSRDI--AEAEQMIEVRRHNVF---KLKIGA 172
Query: 214 KNLKEDIEVLRAI-RAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272
K LK DI+ + I R V ++ +D N + +A + L + G L EQPV
Sbjct: 173 KELKTDIKHVAEIKRVVGEHAAVRVDVNMAWSETQAAWAIPALADAGCE--LVEQPV--- 227
Query: 273 DWEGLGHVSHIAK--DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGAL 329
+ +A+ +F V++ ADE + D+ +I + N ADV IK+ + G+ A
Sbjct: 228 -----ASAAALARLMRRFPVALMADEILQGPDNAFEIARVNGADVFAIKIEQSGGLFAAQ 282
Query: 330 EIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSED 381
+ + A+G+ L G M+E + + HL A ++ +L PLL++E+
Sbjct: 283 RVAAIADAAGIELYGGTMLEGAFSTVASAHLFASFANLQWGTELFGPLLITEE 335
>sp|P05404|TFDD1_CUPPJ Chloromuconate cycloisomerase OS=Cupriavidus pinatubonensis (strain
JMP134 / LMG 1197) GN=tfdDI PE=1 SV=4
Length = 370
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 131/274 (47%), Gaps = 22/274 (8%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYR 201
+AAVEMAL+D A+++ + + L GG ++ T+ + T + A E+ + R
Sbjct: 101 KAAVEMALLDLKARALGVSIAELLGGPLRSAIPIAWTLASGDTKRDLD--SAVEMIERRR 158
Query: 202 KQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMG 259
F K+K+G ++ ++D+ + A+ +++ +D N+ + Q A + +L +G
Sbjct: 159 HNRF---KVKLGFRSPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALG 215
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319
V L EQPV R++ + L +S D V++ ADES +L + + DV ++K
Sbjct: 216 VE--LIEQPVGRENTQALRRLS----DNNRVAIMADESLSTLASAFDLARDRSVDVFSLK 269
Query: 320 LAKVGVLGALE-IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLL 377
L +G + A + I V ASG+ G M+++ + A L + + F +L P +
Sbjct: 270 LCNMGGVSATQKIAAVAEASGIASYGGTMLDSTIGTSVALQLYSTVPSLPFGCELIGPFV 329
Query: 378 LSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411
L++ + E+ + GHG L D +
Sbjct: 330 LADTLSHEPLEIRDYELQVPTGVGHGMTLDEDKV 363
>sp|P11452|CLCB_PSEPU Chloromuconate cycloisomerase OS=Pseudomonas putida GN=clcB PE=3
SV=2
Length = 370
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 22/243 (9%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGG-------VSNTITTDITIPIVSPAEAAELASKYR 201
+AA+++AL D A+S+++PL L GG ++ T+ + T ++ AE E+ + R
Sbjct: 101 KAAIDVALHDLKARSLNLPLSDLIGGAIQQGIPIAWTLASGDTQRDIAIAE--EMIERRR 158
Query: 202 KQGFTTLKLKVG-KNLKEDIE-VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMG 259
F K+K+G ++ +D+ + + I V ++ +D N+ + A + +L G
Sbjct: 159 HNRF---KIKLGVRSPADDLRHIEKIIERVGDRAAVRVDINQAWDENTASVWIPRLEAAG 215
Query: 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319
V L EQPV R +++ L +S GV++ ADES SL ++ + + D ++K
Sbjct: 216 VE--LVEQPVARSNFDALRRLSA----DNGVAILADESLSSLASAFELARHHCVDAFSLK 269
Query: 320 LAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLL 377
L + GV L++ + ASG+ G M+++ + A H+ A L F +L P +
Sbjct: 270 LCNMGGVANTLKVAAIAEASGIASYGGTMLDSSIGTAAALHVYATLPTMPFECELLGPWV 329
Query: 378 LSE 380
L++
Sbjct: 330 LAD 332
>sp|Q2KIA9|ENOF1_BOVIN Mitochondrial enolase superfamily member 1 OS=Bos taurus GN=ENOSF1
PE=2 SV=1
Length = 443
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%)
Query: 191 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAV 249
A +L S+ K G+T K+KVG +L++DI R +R + P+ + ++DAN+ + EAV
Sbjct: 202 ATLKQLCSEALKDGWTRFKVKVGADLQDDIRRCRLVRNMIGPEKTLMMDANQRWDVPEAV 261
Query: 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK 309
E + KL E P+ E+P DD G +S A G+ VA E C + K++++
Sbjct: 262 EWMTKLAEF--KPLWIEEPTSPDDILGHAAISK-ALAPLGIGVATGEQCHNRVIFKQLLQ 318
Query: 310 GNLADVINIKLAKVG 324
+ I ++G
Sbjct: 319 AKALKFLQIDSCRLG 333
>sp|P0CC06|Y4701_DICDI Enolase superfamily member DDB_G0284701 OS=Dictyostelium discoideum
GN=DDB_G0284701 PE=3 SV=1
Length = 437
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 42/263 (15%)
Query: 149 RAAVEMALIDAVAKSVSMPLWRLFGGVSNT------ITTDITIPIVSPAEAAELASKYRK 202
R A+EMAL+D K + P+++L + T + + ++ + SKY
Sbjct: 153 RCAIEMALLDGWGKFLKQPIYKLINIPESESLKPFYYTISMCPTMEEIMDSTDFGSKY-- 210
Query: 203 QGFTTLKLKVGKNLKEDIEVLRAIR-------AVHPDSSFILDANEGYKPQEAVEVLEKL 255
GF LK+K+ ++++ + ++ +++ + S +DAN + P A + LEKL
Sbjct: 211 TGF--LKIKLDADVEKGMNIIDSVQKRLLNNNSTRTISKISVDANSSWTPSVARKYLEKL 268
Query: 256 YEMGVTPVLFEQP--------VHRDDWEGLGHVSHIA------KDKFGVSVAADES-C-- 298
M + EQP V++D + H++ +DK G+ + ADES C
Sbjct: 269 SPMADLISMVEQPFPIETLKTVNKDQKIDIQHLNEWVSIKKEYQDK-GLLIFADESICTE 327
Query: 299 RSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLMIGGMVETRLAMGFA 357
+ LD + ++V G +NIKL K G+ L + + GL IG MV + L + A
Sbjct: 328 KDLDGLVQLVHG-----VNIKLEKTGGIRPGLSTLLKAKELGLKTWIGSMVASSLNVSAA 382
Query: 358 GHLSAGLGCFKFIDLDTPLLLSE 380
HL L F DLD LL+ +
Sbjct: 383 AHLLCSLSDFGG-DLDGGLLIDD 404
>sp|Q6INX4|ENOF1_XENLA Mitochondrial enolase superfamily member 1 OS=Xenopus laevis
GN=enosf1 PE=2 SV=1
Length = 445
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 8/139 (5%)
Query: 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQE 247
S + +L S K+G+T K+KVG +LK+DI IR + PD+ +LDAN+ + QE
Sbjct: 200 SDEQLKKLCSDALKEGWTRFKVKVGADLKDDIRRCELIRDMIGPDNIMMLDANQRWDVQE 259
Query: 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVK 305
A+ ++ L + P+ E+P DD LGH + I+K+ + VA E C + K
Sbjct: 260 AISWVKDLAKY--KPLWIEEPTSPDD--ILGHAT-ISKELSPVNIGVATGEQCHNRVMFK 314
Query: 306 KIVKGNLADVINIKLAKVG 324
+ ++ + I ++G
Sbjct: 315 QFLQAKALQYLQIDSCRLG 333
>sp|Q7L5Y1|ENOF1_HUMAN Mitochondrial enolase superfamily member 1 OS=Homo sapiens
GN=ENOSF1 PE=1 SV=1
Length = 443
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 72/133 (54%), Gaps = 8/133 (6%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
+L ++ K G+T K+KVG +L++D+ + IR + P+ + ++DAN+ + EAVE +
Sbjct: 206 QLCAQALKDGWTRFKVKVGADLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMS 265
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 311
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 266 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 320
Query: 312 LADVINIKLAKVG 324
+ I ++G
Sbjct: 321 ALQFLQIDSCRLG 333
>sp|A0PLU7|MENC_MYCUA o-succinylbenzoate synthase OS=Mycobacterium ulcerans (strain
Agy99) GN=menC PE=3 SV=1
Length = 327
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSF 235
I + T+P V PA+ EL +++ G T K+KV G+ L D+E + A+RA+ P +
Sbjct: 80 IPINATVPAVPPAQVPELLARF--PGARTAKVKVAEPGQTLASDVERVNAVRALVP--TV 135
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+DAN G+ +A + L G L EQP +G ++ + + + V +AAD
Sbjct: 136 RVDANGGWSVDQAAQAAVALTADGPLEYL-EQPCAT-----VGELAEL-RRRIEVPIAAD 188
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI-----IEVVRASGLNLMIG 345
E+ R +D +V+ ADV +K+A + GV L+I I VV +S L+ +G
Sbjct: 189 EAIRKAEDPLAVVRAGAADVAVLKVAPLGGVWALLDIAAQIDIPVVISSALDSAVG 244
>sp|B2HRP4|MENC_MYCMM o-succinylbenzoate synthase OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=menC PE=3 SV=1
Length = 327
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDSSF 235
I + T+P V PA+ EL +++ G T K+KV G+ L D+E + A+RA+ P +
Sbjct: 80 IPINATVPAVPPAQVPELLARF--PGARTAKVKVAEPGQTLASDVERVNAVRALVP--TV 135
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
+DAN G+ +A + L G L EQP +G ++ + + + V +AAD
Sbjct: 136 RVDANGGWSVDQAAQAAVALTADGPLEYL-EQPCAT-----VGELAEL-RRRIEVPIAAD 188
Query: 296 ESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEI-----IEVVRASGLNLMIG 345
E+ R +D +V+ ADV +K+A + GV L+I I VV +S L+ +G
Sbjct: 189 EAIRKAEDPLAVVRAGAADVAVLKVAPLGGVWALLDIAAQIDIPVVISSALDSAVG 244
>sp|Q8P3K2|FUCD_XANCP L-fuconate dehydratase OS=Xanthomonas campestris pv. campestris
(strain ATCC 33913 / NCPPB 528 / LMG 568) GN=XCC4069
PE=1 SV=1
Length = 441
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
LA + GF T+KLKVG N+++DI R R A+ PD + +DAN+ + A++ +
Sbjct: 204 RLAKEAVADGFRTIKLKVGANVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMR 263
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313
+L E + + E+P DD LGH + I + V V+ E ++ K++++
Sbjct: 264 QLAEFDIAWI--EEPTSPDD--VLGHAA-IRQGITPVPVSTGEHTQNRVVFKQLLQAGAV 318
Query: 314 DVINIKLAKVG 324
D+I I A+VG
Sbjct: 319 DLIQIDAARVG 329
>sp|Q5RAT4|ENOF1_PONAB Mitochondrial enolase superfamily member 1 OS=Pongo abelii
GN=ENOSF1 PE=2 SV=1
Length = 443
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIR-AVHPDSSFILDANEGYKPQEAVEVLE 253
+L ++ K G+T K+KVG +L++D+ + IR + + + ++DAN+ + EAVE +
Sbjct: 206 QLCAQALKDGWTRFKVKVGADLQDDVRRCQIIRDMIGLEKTLMMDANQRWDVPEAVEWMS 265
Query: 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD--KFGVSVAADESCRSLDDVKKIVKGN 311
KL + P+ E+P DD LGH + I+K G+ +A E C + K++++
Sbjct: 266 KLAKF--KPLWIEEPTSPDD--ILGHAT-ISKALVPLGIGIATGEQCHNRVIFKQLLQAK 320
Query: 312 LADVINIKLAKVG 324
+ I ++G
Sbjct: 321 ALQFLQIDSCRLG 333
>sp|Q9CBB2|MENC_MYCLE Probable o-succinylbenzoate synthase OS=Mycobacterium leprae
(strain TN) GN=menC PE=3 SV=1
Length = 334
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 24/183 (13%)
Query: 174 GVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVH 230
G + I + T+P VS + E+ +++ G T K+KV G+NL +D++ + A+R +
Sbjct: 72 GRRDRIPINATVPAVSATQVPEVLARF--PGVRTAKVKVAEPGQNLADDVDRVNAVRELV 129
Query: 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKF 288
+ +DAN G+ + A + L G L EQP V+ +A + +
Sbjct: 130 --ETVRVDANGGWSVEAAAQAAVALTADGPLEYL-EQPC--------ATVAELAALRRRV 178
Query: 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG------VLGALEIIEVVRASGLNL 342
+ +AADES R DD +V+ + ADV +K+A +G + A I VV +S L+
Sbjct: 179 DIPIAADESIRKADDPLAVVRSHAADVAVLKVAPLGGIASFLAIAAQIDIPVVVSSALDS 238
Query: 343 MIG 345
++G
Sbjct: 239 VVG 241
>sp|P11444|MANR_PSEPU Mandelate racemase OS=Pseudomonas putida GN=mdlA PE=1 SV=1
Length = 359
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)
Query: 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVG----WGEAPVLPHVTAE--DQQ 105
R +NVPL P A + V I + S G VG + PV + D
Sbjct: 10 RTRAVNVPLAYPVHTAVGTVGTAPLVLIDLATSAGVVGHSYLFAYTPVALKSLKQLLDDM 69
Query: 106 TAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAA-VEMALIDAVAKSV 164
AM+ V E+ L F +AG + +++ AA ++MA DA+ K
Sbjct: 70 AAMIVNEPLAPVSLEA---MLAKRF-CLAG------YTGLIRMAAAGIDMAAWDALGKVH 119
Query: 165 SMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVL 223
PL +L G + + + + A E A + GF +K K+G L +D+ V+
Sbjct: 120 ETPLVKLLGANARPVQAYDSHSLDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVV 179
Query: 224 RAIR-AVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282
R+IR AV D ++D N+ A++ + L + GVT E+P + D+EG +
Sbjct: 180 RSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVT--WIEEPTLQHDYEGHQRI-- 235
Query: 283 IAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEV---VRASG 339
+ K V V E+ +++ K ++I ++ + A++I V +RAS
Sbjct: 236 --QSKLNVPVQMGENWLGPEEMFK--------ALSIGACRLAMPDAMKIGGVTGWIRASA 285
Query: 340 LNLMIGGMVETRLAMGFAGHLSA 362
L G + + L + HL A
Sbjct: 286 LAQQFGIPMSSHLFQEISAHLLA 308
>sp|P65425|MENC_MYCTU Probable o-succinylbenzoate synthase OS=Mycobacterium tuberculosis
GN=menC PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 233
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 291
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 345
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|A5TZT3|MENC_MYCTA o-succinylbenzoate synthase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=menC PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 233
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 291
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 345
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|C1AKN3|MENC_MYCBT o-succinylbenzoate synthase OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=menC PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 233
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 291
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 345
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|A1KG30|MENC_MYCBP o-succinylbenzoate synthase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=menC PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 233
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 291
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 345
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|P65426|MENC_MYCBO Probable o-succinylbenzoate synthase OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=menC PE=3 SV=1
Length = 326
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 24/180 (13%)
Query: 177 NTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAVHPDS 233
+ + + T+P V+ A+ E+ +++ G T K+KV G++L +DIE + A+R + P
Sbjct: 78 DRVPINATVPAVAAAQVGEVLARF--PGARTAKVKVAEPGQSLADDIERVNAVRELVP-- 133
Query: 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDKFGVS 291
+DAN G+ EAV L G L EQP V+ +A + + V
Sbjct: 134 MVRVDANGGWGVAEAVAAAAALTADGPLEYL-EQPC--------ATVAELAELRRRVDVP 184
Query: 292 VAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALE------IIEVVRASGLNLMIG 345
+AADES R +D +V+ AD+ +K+A +G + AL + VV +S L+ +G
Sbjct: 185 IAADESIRKAEDPLAVVRAQAADIAVLKVAPLGGISALLDIAARIAVPVVVSSALDSAVG 244
>sp|O06741|YITF_BACSU Putative isomerase YitF OS=Bacillus subtilis (strain 168) GN=yitF
PE=1 SV=1
Length = 371
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/314 (22%), Positives = 124/314 (39%), Gaps = 46/314 (14%)
Query: 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEA----PVLPHVTA 101
+ + R E PL L P+ A IRI +G GWGE P L HV
Sbjct: 1 MKIVRIETFPLFHRLEKPYGDANGFKRYRTCYLIRIITESGIDGWGECVDWLPAL-HVGF 59
Query: 102 EDQQTAMVKASEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVA 161
+ + +A GS +V + HQ A+ +AV MAL + A
Sbjct: 60 TKRIIPFLLGKQA------------GSRLSLVRTIQKWHQRAA-----SAVSMALTEIAA 102
Query: 162 KSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKY-----------RKQGFTTLKL 210
K+ + L+GG IP+ + ++ + ++ K+GF +K+
Sbjct: 103 KAADCSVCELWGGRYRE-----EIPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKV 157
Query: 211 KV-GKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268
K+ G + KED+ + A++ S + ILDAN+ Y A + E+ + E+P
Sbjct: 158 KIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFK-WERYFSEWTNIGWLEEP 216
Query: 269 VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLG 327
+ D + + + + V VA E+ + ++ D+I + V G+
Sbjct: 217 LPFDQPQDYA----MLRSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGIDE 272
Query: 328 ALEIIEVVRASGLN 341
+ +++ R G+
Sbjct: 273 FRDCLQLARYFGVR 286
>sp|A0QRG0|MENC_MYCS2 o-succinylbenzoate synthase OS=Mycobacterium smegmatis (strain ATCC
700084 / mc(2)155) GN=menC PE=3 SV=1
Length = 321
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 92/188 (48%), Gaps = 20/188 (10%)
Query: 173 GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKV---GKNLKEDIEVLRAIRAV 229
+ + + + T+P VS E+ +++ G T K+KV G++L +D+ + A+R
Sbjct: 74 AALRDRVPINATVPAVSAERVPEVLARF--PGARTAKVKVAEPGQSLADDVARVNAVRES 131
Query: 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA--KDK 287
P +DAN G+ +AVE L G L EQP V +A + +
Sbjct: 132 VP--VVRVDANGGWSVDDAVEAAAALTADGELEYL-EQPC--------ATVEELAALRAR 180
Query: 288 FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347
V +AADES R +D ++V+ + AD+ +K+A +G G ++++ + +++
Sbjct: 181 VDVPIAADESIRKAEDPLRVVRAHAADIAVLKVAPLG--GVARMLDIAAQIDIPIVVSSA 238
Query: 348 VETRLAMG 355
+++ + +G
Sbjct: 239 LDSSVGIG 246
>sp|Q57I11|DGOD_SALCH D-galactonate dehydratase OS=Salmonella choleraesuis (strain
SC-B67) GN=dgoD PE=3 SV=1
Length = 382
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE V +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGEP-----VIESRARTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5BIK9|DGOD_SALPK D-galactonate dehydratase OS=Salmonella paratyphi A (strain
AKU_12601) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B6EJ59|MENC_ALISL o-succinylbenzoate synthase OS=Aliivibrio salmonicida (strain
LFI1238) GN=menC PE=3 SV=1
Length = 324
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFG 289
PD S LDAN G+ P++A + + + + F E+P HR + E L G
Sbjct: 156 PDLSLRLDANRGWTPKKAEQFANYVSPQYRSRIEFLEEPCHRPE-ESLEFSKAT-----G 209
Query: 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMIGGMV 348
+++A DE+ R D+ ++ + I IK VG +G +E++E G+ +I +
Sbjct: 210 IAIAWDETVR--DEGFEVKAQDGVAAIVIKPTLVGSVGKCIELVEQAHLLGMQAVISSSI 267
Query: 349 ETRLAMGFAGHLSA--------GLGCFKF--IDLDTPLLLSEDPV 383
E+ LA+ L+A GL + LDTP E P+
Sbjct: 268 ESSLALTQLARLAAWKTPNTIPGLDTIDLFKMQLDTPWPHCELPM 312
>sp|Q8ZKZ1|DGOD_SALTY D-galactonate dehydratase OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|A9MWL9|DGOD_SALPB D-galactonate dehydratase OS=Salmonella paratyphi B (strain ATCC
BAA-1250 / SPB7) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B4SY97|DGOD_SALNS D-galactonate dehydratase OS=Salmonella newport (strain SL254)
GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B4TA81|DGOD_SALHS D-galactonate dehydratase OS=Salmonella heidelberg (strain SL476)
GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5QUN9|DGOD_SALEP D-galactonate dehydratase OS=Salmonella enteritidis PT4 (strain
P125109) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5FN00|DGOD_SALDC D-galactonate dehydratase OS=Salmonella dublin (strain CT_02021853)
GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|B5RFZ8|DGOD_SALG2 D-galactonate dehydratase OS=Salmonella gallinarum (strain 287/91 /
NCTC 13346) GN=dgoD PE=3 SV=1
Length = 382
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHEFADYLIGKDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ V+ RAV
Sbjct: 131 GIEKLRGIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|A4W4R9|DGOD_ENT38 D-galactonate dehydratase OS=Enterobacter sp. (strain 638) GN=dgoD
PE=3 SV=1
Length = 382
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E E L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHELKEYLIGQDPARINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PAE +
Sbjct: 73 YRGGPIL--MSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPAEVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
R GF T KL N E++ V+ RAV
Sbjct: 131 GIKTLRNIGFDTFKL----NGCEEMGVIDNSRAV 160
>sp|Q8KB35|ENO1_CHLTE Enolase 1 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=eno1 PE=3 SV=1
Length = 427
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 254 KLYEMGVTP---VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310
KL+E V VL E + +DWEG +++ + +K + V D C + + +
Sbjct: 270 KLWESWVNQYPIVLLEDGMAENDWEGWKNLTDVIGNKIEI-VGDDLFCTNKSILLNGINK 328
Query: 311 NLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI----GGMVET---RLAMGF-AGHLS 361
+A+ I IKL ++G V LE IE+ + N + G V++ L +G AGHL
Sbjct: 329 GVANSILIKLNQIGTVTETLETIELAYKNSYNCFVSHRSGETVDSFIADLTVGINAGHLK 388
Query: 362 AGLGC 366
+G GC
Sbjct: 389 SGSGC 393
>sp|A6TFZ4|DGOD_KLEP7 D-galactonate dehydratase OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=dgoD PE=3
SV=1
Length = 382
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 14/154 (9%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ G
Sbjct: 18 LKIETDEGIVGWGE-PVIEGRA----RTVEAAVHEFGDYLIGQDPARINDLWQVMYRGGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PAE +
Sbjct: 73 YRGGPI--MMSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPAEVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229
K R GF T KL N E++ ++ RAV
Sbjct: 131 GIKKLRGIGFDTFKL----NGCEEMGIIDNSRAV 160
>sp|Q15KI9|PHYLO_ARATH Protein PHYLLO, chloroplastic OS=Arabidopsis thaliana GN=PHYLLO PE=2
SV=2
Length = 1715
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 127/311 (40%), Gaps = 43/311 (13%)
Query: 21 QMASSPPAAAAPTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQV--ENVA 78
Q A + + +SF + V + V L TI + Q E
Sbjct: 967 QAAENSLGIVSASSFLHPMIKNVLLCQVSGIQYSQYRVKLCDRPTICSDEFSQFHREGFI 1026
Query: 79 IRIELSNGCVGWGE-APVLPHVT----AEDQQTAMV------KASEACEVLKESPAMALG 127
+ + L +G +G+GE AP+ +V E Q ++ K S +L S + +
Sbjct: 1027 LSLTLEDGSIGYGEVAPLNSNVENLMDVEGQLQLVLHLMNEAKFSYMLPLLNGSISSWIW 1086
Query: 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF------GGVSNTITT 181
S G+ A + F S VR +EMAL++A+A L + G + +
Sbjct: 1087 SELGITASSI----FPS---VRCGLEMALLNAMAVRHDSSLLGILHYQKEENGSAQPHSV 1139
Query: 182 DITIPIVS---PAEAAELASKYRKQGFTTLKLKVGKNLK--EDIEVLRAI-RAVHPDSSF 235
I + S P E A +A K ++GF+ +KLKVG+ + +D V++ + RAV
Sbjct: 1140 QICALLDSEGTPLEVAYVARKLVQEGFSAIKLKVGRRVSSVQDALVMQEVRRAVGVQIEL 1199
Query: 236 ILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295
DAN + +EA E L E+PV D H ++ G+ VA D
Sbjct: 1200 RADANCRWTFEEAREF--GLLVNSCNLKYIEEPVQNKDDLIRFH------EETGLPVALD 1251
Query: 296 ESCRSLDDVKK 306
E +LDD ++
Sbjct: 1252 E---TLDDFEE 1259
>sp|Q74J64|ENO2_LACJO Enolase 2 OS=Lactobacillus johnsonii (strain CNCM I-12250 / La1 /
NCC 533) GN=eno2 PE=3 SV=1
Length = 428
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS---VAADESCR 299
+ +E ++ +KL + + E P +DWE + KFG + VA D C
Sbjct: 262 WNGEEMLQYYDKLLKEFPEIISCEDPFDENDWENFEKFTA----KFGSTHQVVADDNVCT 317
Query: 300 SLDDVKKIVKGNLADVINIKLAKVGVLG-ALEIIEVVRASGLNLMI 344
+ V+K +K L + I IKL ++G + LE I + R + + M+
Sbjct: 318 NPKLVRKAIKDKLCNSILIKLNQIGTITETLETIRLARKNNMTTMV 363
>sp|B5XW18|DGOD_KLEP3 D-galactonate dehydratase OS=Klebsiella pneumoniae (strain 342)
GN=dgoD PE=3 SV=1
Length = 382
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 10/136 (7%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE P V + ++ + PA + ++ V+ AG
Sbjct: 18 LKIETDEGIVGWGE----PIVEGRARTVEAAVHELGDYLIGQDPAR-INDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K+++ P+W+L GG V + I + PAE
Sbjct: 73 YRGGPIL--MSAIAGIDQALWDIKGKALNAPVWQLLGGLVRDKIKAYSWVGGDRPAEVIA 130
Query: 196 LASKYRKQGFTTLKLK 211
+ R GF T KL
Sbjct: 131 GINTLRGMGFDTFKLN 146
>sp|B7LK34|DGOD_ESCF3 D-galactonate dehydratase OS=Escherichia fergusonii (strain ATCC
35469 / DSM 13698 / CDC 0568-73) GN=dgoD PE=3 SV=1
Length = 382
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 105/265 (39%), Gaps = 38/265 (14%)
Query: 79 IRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV--AGL 136
++IE G VGWGE PV+ +T E + L + ++ V+ AG
Sbjct: 18 LKIETDEGVVGWGE-PVIEGRA----RTVEAAVHELSDYLIGQDPSRINDLWQVMYRAGF 72
Query: 137 LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG-VSNTITTDITIPIVSPAEAAE 195
G + A ++ AL D K ++ P+W+L GG V + I + PA+ +
Sbjct: 73 YRGGPIL--MSAIAGIDQALWDIKGKVLNAPVWQLMGGLVRDKIKAYSWVGGDRPADVID 130
Query: 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQ--------- 246
R+ GF T KL N E++ ++ RAV + + E + Q
Sbjct: 131 GIKTLREIGFDTFKL----NGCEELGLIDNSRAVDAAVNTVAQIREAFGNQIEFGLDFHG 186
Query: 247 ----EAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCR 299
+VL K E P+ E+PV + + L +HI +AA E
Sbjct: 187 RVSAPMAKVLIKELE-PYRPLFIEEPVLAEQAEYYPKLAAQTHI-------PLAAGERMF 238
Query: 300 SLDDVKKIVKGNLADVINIKLAKVG 324
S D K++++ ++ L+ G
Sbjct: 239 SRFDFKRVLEAGGISILQPDLSHAG 263
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,741,656
Number of Sequences: 539616
Number of extensions: 6001368
Number of successful extensions: 19356
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 191
Number of HSP's that attempted gapping in prelim test: 19234
Number of HSP's gapped (non-prelim): 249
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)