Query 015161
Match_columns 412
No_of_seqs 174 out of 1660
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:41:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02534 mucon_cyclo muconate 100.0 2E-70 4.3E-75 548.5 38.6 354 48-412 1-363 (368)
2 cd03318 MLE Muconate Lactonizi 100.0 3.6E-70 7.8E-75 546.4 40.2 355 47-412 1-364 (365)
3 cd03317 NAAAR N-acylamino acid 100.0 1.6E-67 3.5E-72 525.3 40.3 346 51-412 1-353 (354)
4 cd03328 MR_like_3 Mandelate ra 100.0 8.2E-68 1.8E-72 525.9 36.6 343 47-409 1-352 (352)
5 cd03321 mandelate_racemase Man 100.0 8.9E-68 1.9E-72 526.8 34.9 347 46-412 1-352 (355)
6 cd03323 D-glucarate_dehydratas 100.0 1.6E-66 3.6E-71 522.9 37.2 348 47-411 1-385 (395)
7 PRK15072 bifunctional D-altron 100.0 1.3E-65 2.7E-70 518.8 37.6 340 46-412 1-382 (404)
8 cd03329 MR_like_4 Mandelate ra 100.0 2.3E-65 5E-70 511.8 37.3 343 47-412 1-366 (368)
9 PRK14017 galactonate dehydrata 100.0 5.7E-65 1.2E-69 511.2 35.9 336 46-411 1-357 (382)
10 cd03316 MR_like Mandelate race 100.0 5.1E-64 1.1E-68 500.8 38.0 343 47-405 1-357 (357)
11 cd03326 MR_like_1 Mandelate ra 100.0 8.1E-64 1.8E-68 501.1 38.3 339 51-411 3-379 (385)
12 cd03322 rpsA The starvation se 100.0 6.9E-64 1.5E-68 499.6 35.7 332 47-412 1-339 (361)
13 cd03325 D-galactonate_dehydrat 100.0 1.7E-63 3.6E-68 495.4 36.9 331 47-407 1-352 (352)
14 cd03327 MR_like_2 Mandelate ra 100.0 7.1E-63 1.5E-67 488.9 36.2 321 47-407 1-341 (341)
15 cd03324 rTSbeta_L-fuconate_deh 100.0 2.5E-62 5.5E-67 493.9 37.6 345 46-407 1-415 (415)
16 COG4948 L-alanine-DL-glutamate 100.0 4.4E-62 9.5E-67 489.1 34.9 351 46-411 1-363 (372)
17 TIGR03247 glucar-dehydr glucar 100.0 1.5E-61 3.2E-66 491.0 37.1 347 46-411 4-402 (441)
18 TIGR01928 menC_lowGC/arch o-su 100.0 2.1E-60 4.6E-65 467.9 36.5 317 54-386 1-322 (324)
19 PRK15440 L-rhamnonate dehydrat 100.0 1.2E-59 2.6E-64 471.6 34.9 312 72-411 54-387 (394)
20 PRK15129 L-Ala-D/L-Glu epimera 100.0 1.1E-58 2.4E-63 455.2 39.2 316 50-395 3-320 (321)
21 cd03319 L-Ala-DL-Glu_epimerase 100.0 2.8E-58 6E-63 452.1 39.5 311 50-375 1-313 (316)
22 cd03315 MLE_like Muconate lact 100.0 1.3E-55 2.8E-60 422.8 33.3 256 51-366 1-258 (265)
23 TIGR01927 menC_gamma/gm+ o-suc 100.0 1.1E-52 2.4E-57 409.6 30.5 289 54-377 1-295 (307)
24 cd03320 OSBS o-Succinylbenzoat 100.0 5.2E-53 1.1E-57 404.2 27.0 250 52-367 2-255 (263)
25 TIGR01502 B_methylAsp_ase meth 100.0 6.7E-52 1.5E-56 414.0 35.6 287 73-366 48-376 (408)
26 PRK05105 O-succinylbenzoate sy 100.0 3.9E-51 8.5E-56 401.3 32.4 296 49-383 2-302 (322)
27 PRK02714 O-succinylbenzoate sy 100.0 6E-51 1.3E-55 399.8 32.4 282 50-366 4-292 (320)
28 cd03314 MAL Methylaspartate am 100.0 4.9E-51 1.1E-55 403.8 31.1 288 75-367 13-341 (369)
29 cd00308 enolase_like Enolase-s 100.0 1.2E-49 2.5E-54 373.6 25.9 225 51-371 1-228 (229)
30 PLN02980 2-oxoglutarate decarb 100.0 2.5E-48 5.5E-53 447.3 37.5 311 38-365 923-1266(1655)
31 PRK02901 O-succinylbenzoate sy 100.0 6E-42 1.3E-46 335.2 29.6 280 52-411 13-299 (327)
32 PRK00077 eno enolase; Provisio 100.0 4.2E-41 9.1E-46 340.9 32.9 303 46-366 2-384 (425)
33 cd03313 enolase Enolase: Enola 100.0 3.6E-40 7.8E-45 332.5 29.3 289 74-366 13-384 (408)
34 TIGR01060 eno phosphopyruvate 100.0 2E-39 4.3E-44 328.7 32.0 289 74-368 15-387 (425)
35 PLN00191 enolase 100.0 1.5E-33 3.2E-38 285.5 33.7 303 45-367 25-417 (457)
36 PTZ00081 enolase; Provisional 100.0 5.5E-31 1.2E-35 265.9 33.1 300 45-366 1-402 (439)
37 COG1441 MenC O-succinylbenzoat 99.9 7.9E-24 1.7E-28 189.6 17.2 273 50-363 3-281 (321)
38 PF02746 MR_MLE_N: Mandelate r 99.9 6.3E-23 1.4E-27 172.4 13.4 115 49-173 2-117 (117)
39 PF13378 MR_MLE_C: Enolase C-t 99.9 3E-22 6.6E-27 166.6 9.9 106 295-405 1-111 (111)
40 COG0148 Eno Enolase [Carbohydr 99.9 8.1E-20 1.8E-24 176.3 27.1 301 47-365 3-380 (423)
41 PRK08350 hypothetical protein; 99.9 3.3E-20 7.2E-25 177.6 23.9 284 47-366 3-307 (341)
42 PTZ00378 hypothetical protein; 99.8 2.2E-16 4.7E-21 159.3 30.5 298 44-365 47-450 (518)
43 KOG2670 Enolase [Carbohydrate 99.7 9.8E-15 2.1E-19 137.2 21.2 282 74-365 17-391 (433)
44 PF01188 MR_MLE: Mandelate rac 99.7 3.3E-16 7.1E-21 118.2 8.6 66 222-295 1-67 (67)
45 COG3799 Mal Methylaspartate am 99.6 2.3E-13 4.9E-18 126.6 17.8 287 74-365 50-376 (410)
46 PF07476 MAAL_C: Methylasparta 99.4 1.3E-11 2.9E-16 111.1 14.1 161 203-365 33-216 (248)
47 PF00113 Enolase_C: Enolase, C 99.3 5E-11 1.1E-15 114.8 12.6 118 243-366 133-254 (295)
48 cd02932 OYE_YqiM_FMN Old yello 99.1 2.9E-09 6.3E-14 105.6 14.7 121 192-318 155-319 (336)
49 cd02801 DUS_like_FMN Dihydrour 99.1 7.2E-09 1.6E-13 97.1 16.4 144 169-319 45-213 (231)
50 cd04733 OYE_like_2_FMN Old yel 98.8 1.7E-07 3.6E-12 93.2 16.0 121 192-318 150-321 (338)
51 PF03952 Enolase_N: Enolase, N 98.7 6.2E-07 1.3E-11 76.5 14.3 114 47-172 1-132 (132)
52 cd02803 OYE_like_FMN_family Ol 98.6 5.8E-07 1.3E-11 88.8 14.8 120 193-318 143-310 (327)
53 cd02930 DCR_FMN 2,4-dienoyl-Co 98.6 9.2E-07 2E-11 88.4 14.4 122 193-318 139-305 (353)
54 PF05034 MAAL_N: Methylasparta 97.8 0.00028 6E-09 60.7 10.5 108 63-172 38-153 (159)
55 PRK10550 tRNA-dihydrouridine s 97.6 0.0035 7.7E-08 61.5 16.3 143 178-324 62-229 (312)
56 PRK10415 tRNA-dihydrouridine s 97.3 0.0073 1.6E-07 59.6 15.5 138 180-324 66-229 (321)
57 COG0042 tRNA-dihydrouridine sy 97.1 0.014 3.1E-07 57.6 14.9 143 178-324 66-233 (323)
58 PRK11815 tRNA-dihydrouridine s 97.0 0.049 1.1E-06 54.0 17.6 142 170-319 56-233 (333)
59 PF01207 Dus: Dihydrouridine s 96.9 0.011 2.4E-07 58.1 12.1 135 178-319 53-213 (309)
60 cd02810 DHOD_DHPD_FMN Dihydroo 96.9 0.017 3.7E-07 55.9 13.3 132 179-318 99-271 (289)
61 TIGR00736 nifR3_rel_arch TIM-b 96.9 0.047 1E-06 51.2 15.3 131 180-318 69-219 (231)
62 cd04734 OYE_like_3_FMN Old yel 96.8 0.056 1.2E-06 53.9 16.0 120 193-318 143-314 (343)
63 TIGR00737 nifR3_yhdG putative 96.8 0.06 1.3E-06 53.0 16.0 135 178-319 62-222 (319)
64 cd02931 ER_like_FMN Enoate red 96.8 0.041 8.9E-07 55.6 15.1 124 193-318 152-334 (382)
65 PRK07259 dihydroorotate dehydr 96.7 0.055 1.2E-06 52.8 15.4 131 179-319 92-263 (301)
66 TIGR00742 yjbN tRNA dihydrouri 96.7 0.082 1.8E-06 52.1 16.6 142 171-320 47-224 (318)
67 cd04747 OYE_like_5_FMN Old yel 96.6 0.084 1.8E-06 52.9 15.4 119 193-317 146-326 (361)
68 cd02911 arch_FMN Archeal FMN-b 96.5 0.14 3E-06 48.2 15.5 131 180-321 74-222 (233)
69 PRK10605 N-ethylmaleimide redu 96.4 0.084 1.8E-06 53.0 14.7 123 193-318 161-320 (362)
70 cd04740 DHOD_1B_like Dihydroor 96.4 0.14 3.1E-06 49.7 15.5 132 180-321 91-262 (296)
71 PRK08255 salicylyl-CoA 5-hydro 96.1 0.15 3.2E-06 56.4 15.7 144 193-341 553-737 (765)
72 PRK13523 NADPH dehydrogenase N 95.9 0.21 4.7E-06 49.6 14.4 118 194-317 145-303 (337)
73 TIGR01037 pyrD_sub1_fam dihydr 95.9 0.27 5.9E-06 47.9 14.9 152 180-341 92-290 (300)
74 COG1902 NemA NADH:flavin oxido 95.9 0.26 5.7E-06 49.4 14.8 124 193-316 151-315 (363)
75 cd04735 OYE_like_4_FMN Old yel 95.7 0.24 5.2E-06 49.5 13.7 119 193-316 146-310 (353)
76 TIGR00735 hisF imidazoleglycer 95.5 0.32 6.8E-06 46.3 13.1 152 180-342 76-253 (254)
77 cd02933 OYE_like_FMN Old yello 95.3 0.71 1.5E-05 45.9 15.4 119 193-318 154-313 (338)
78 TIGR01182 eda Entner-Doudoroff 95.0 0.29 6.3E-06 45.0 10.9 96 244-352 18-114 (204)
79 cd02929 TMADH_HD_FMN Trimethyl 95.0 0.86 1.9E-05 45.9 15.2 121 193-318 152-318 (370)
80 cd00377 ICL_PEPM Members of th 94.9 0.46 1E-05 44.9 12.3 103 186-295 79-202 (243)
81 PRK07114 keto-hydroxyglutarate 94.5 0.62 1.4E-05 43.4 11.9 99 244-352 25-125 (222)
82 PRK06015 keto-hydroxyglutarate 94.4 0.62 1.3E-05 42.7 11.4 99 243-354 13-112 (201)
83 COG0800 Eda 2-keto-3-deoxy-6-p 94.4 0.55 1.2E-05 43.2 10.8 96 244-352 23-119 (211)
84 PRK06552 keto-hydroxyglutarate 93.9 0.75 1.6E-05 42.6 11.1 99 244-352 23-122 (213)
85 PRK05718 keto-hydroxyglutarate 93.7 0.76 1.7E-05 42.5 10.7 97 242-351 23-120 (212)
86 PF00724 Oxidored_FMN: NADH:fl 93.4 0.63 1.4E-05 46.3 10.3 126 193-318 151-320 (341)
87 PF01081 Aldolase: KDPG and KH 93.3 0.68 1.5E-05 42.3 9.4 99 243-354 17-116 (196)
88 COG0821 gcpE 1-hydroxy-2-methy 92.9 0.9 2E-05 44.4 10.1 97 244-348 34-132 (361)
89 PRK02083 imidazole glycerol ph 92.8 2.3 5E-05 40.3 12.8 150 182-342 78-251 (253)
90 TIGR00612 ispG_gcpE 1-hydroxy- 92.3 1.3 2.8E-05 43.5 10.2 96 244-347 32-129 (346)
91 PRK00366 ispG 4-hydroxy-3-meth 92.1 1.9 4.2E-05 42.6 11.4 96 244-347 40-138 (360)
92 PRK13585 1-(5-phosphoribosyl)- 91.7 3.5 7.6E-05 38.6 12.5 122 186-318 84-221 (241)
93 cd04738 DHOD_2_like Dihydrooro 91.6 3.4 7.4E-05 40.8 12.9 121 190-318 147-308 (327)
94 PRK05096 guanosine 5'-monophos 91.5 13 0.00028 36.8 16.3 128 188-347 79-221 (346)
95 cd07943 DRE_TIM_HOA 4-hydroxy- 91.5 2.6 5.6E-05 40.2 11.6 98 242-346 18-132 (263)
96 PLN02617 imidazole glycerol ph 91.2 4.2 9.1E-05 43.0 13.6 159 179-342 315-536 (538)
97 cd02940 DHPD_FMN Dihydropyrimi 91.2 7.9 0.00017 37.7 14.8 131 180-320 101-282 (299)
98 TIGR01304 IMP_DH_rel_2 IMP deh 90.8 13 0.00028 37.4 16.1 104 194-317 102-214 (369)
99 PRK12330 oxaloacetate decarbox 90.6 24 0.00053 36.9 18.9 168 189-362 25-221 (499)
100 PRK11320 prpB 2-methylisocitra 90.6 11 0.00025 36.6 15.0 102 186-294 88-207 (292)
101 COG0106 HisA Phosphoribosylfor 90.5 7.6 0.00016 36.5 13.1 131 195-332 88-238 (241)
102 cd07944 DRE_TIM_HOA_like 4-hyd 90.5 4.4 9.4E-05 38.9 12.0 103 240-347 14-130 (266)
103 PRK01033 imidazole glycerol ph 90.5 5.7 0.00012 37.8 12.8 114 197-317 89-224 (258)
104 TIGR02317 prpB methylisocitrat 90.3 6.6 0.00014 38.1 13.1 102 186-294 83-202 (285)
105 TIGR03572 WbuZ glycosyl amidat 90.2 7.4 0.00016 36.2 13.1 123 186-318 82-226 (232)
106 PRK14042 pyruvate carboxylase 90.1 24 0.00052 37.9 18.2 167 189-362 24-218 (596)
107 KOG2550 IMP dehydrogenase/GMP 90.1 2.2 4.8E-05 42.8 9.6 99 217-347 250-362 (503)
108 PRK05458 guanosine 5'-monophos 90.1 12 0.00025 37.1 14.8 117 191-319 96-230 (326)
109 TIGR03217 4OH_2_O_val_ald 4-hy 90.0 4.8 0.0001 39.9 12.2 101 241-346 19-134 (333)
110 cd03174 DRE_TIM_metallolyase D 90.0 14 0.00031 34.7 15.3 170 189-371 17-220 (265)
111 PRK00748 1-(5-phosphoribosyl)- 90.0 8.4 0.00018 35.7 13.3 123 186-318 82-219 (233)
112 cd04731 HisF The cyclase subun 90.0 8.1 0.00018 36.2 13.3 127 180-318 73-222 (243)
113 PRK12581 oxaloacetate decarbox 89.8 16 0.00035 37.9 16.1 167 189-362 33-227 (468)
114 PRK08649 inosine 5-monophospha 89.7 8.9 0.00019 38.6 13.9 131 216-360 117-277 (368)
115 PRK07998 gatY putative fructos 89.6 8.3 0.00018 37.3 13.1 136 157-319 66-229 (283)
116 cd00945 Aldolase_Class_I Class 89.6 14 0.00031 32.7 16.2 130 179-312 49-195 (201)
117 KOG2335 tRNA-dihydrouridine sy 89.6 13 0.00029 36.9 14.5 150 180-340 75-268 (358)
118 PRK09140 2-dehydro-3-deoxy-6-p 89.5 17 0.00037 33.4 16.4 141 185-347 16-159 (206)
119 COG0159 TrpA Tryptophan syntha 89.5 16 0.00035 35.0 14.6 135 181-317 21-231 (265)
120 PRK06552 keto-hydroxyglutarate 89.0 19 0.00041 33.3 16.3 143 185-348 19-164 (213)
121 CHL00200 trpA tryptophan synth 88.9 16 0.00034 35.0 14.4 92 180-271 18-156 (263)
122 PRK14024 phosphoribosyl isomer 88.9 8.8 0.00019 36.1 12.6 117 195-318 88-221 (241)
123 PTZ00314 inosine-5'-monophosph 88.8 18 0.00038 38.0 15.9 109 234-351 229-356 (495)
124 cd04732 HisA HisA. Phosphorib 88.6 7.1 0.00015 36.2 11.8 121 186-318 81-218 (234)
125 PRK07565 dihydroorotate dehydr 88.4 18 0.0004 35.7 15.1 134 179-319 102-268 (334)
126 cd00956 Transaldolase_FSA Tran 88.0 16 0.00034 33.7 13.4 115 221-347 41-166 (211)
127 PRK05286 dihydroorotate dehydr 87.8 4.8 0.0001 40.1 10.6 122 189-318 155-317 (344)
128 PRK01130 N-acetylmannosamine-6 87.8 21 0.00045 32.9 14.2 109 195-318 79-201 (221)
129 TIGR02319 CPEP_Pphonmut carbox 87.8 17 0.00038 35.3 14.0 100 186-292 87-204 (294)
130 cd00947 TBP_aldolase_IIB Tagat 87.3 6.5 0.00014 37.9 10.7 100 242-343 20-127 (276)
131 PRK12738 kbaY tagatose-bisphos 87.3 7.4 0.00016 37.7 11.1 57 286-343 71-132 (286)
132 cd07940 DRE_TIM_IPMS 2-isoprop 87.2 6.1 0.00013 37.8 10.6 103 242-350 16-138 (268)
133 cd04741 DHOD_1A_like Dihydroor 87.2 30 0.00065 33.6 16.1 139 179-321 92-274 (294)
134 TIGR01859 fruc_bis_ald_ fructo 87.1 7.2 0.00016 37.8 11.0 57 286-343 70-132 (282)
135 TIGR01769 GGGP geranylgeranylg 87.0 4.7 0.0001 37.1 9.2 71 243-318 131-204 (205)
136 PRK08195 4-hyroxy-2-oxovalerat 87.0 8.9 0.00019 38.1 11.8 101 240-347 19-136 (337)
137 TIGR01182 eda Entner-Doudoroff 86.8 25 0.00055 32.3 15.7 142 185-348 14-157 (204)
138 PRK06806 fructose-bisphosphate 86.8 7.4 0.00016 37.6 10.8 57 286-343 71-132 (281)
139 PRK12331 oxaloacetate decarbox 86.8 42 0.00091 34.8 17.1 167 189-362 24-218 (448)
140 TIGR02320 PEP_mutase phosphoen 86.7 23 0.00051 34.3 14.2 122 188-311 89-233 (285)
141 cd04739 DHOD_like Dihydroorota 86.4 25 0.00054 34.7 14.7 158 179-341 100-294 (325)
142 PRK06015 keto-hydroxyglutarate 86.4 27 0.00058 32.1 15.3 142 185-348 10-153 (201)
143 cd06660 Aldo_ket_red Aldo-keto 86.3 31 0.00066 32.8 15.7 156 189-349 27-202 (285)
144 PRK14040 oxaloacetate decarbox 86.3 52 0.0011 35.4 19.0 167 189-362 25-219 (593)
145 PRK06801 hypothetical protein; 86.3 11 0.00023 36.7 11.6 65 277-342 62-131 (286)
146 TIGR00007 phosphoribosylformim 86.1 18 0.00038 33.5 12.8 115 196-318 86-217 (230)
147 PLN02591 tryptophan synthase 86.0 32 0.00069 32.7 14.5 72 244-316 116-215 (250)
148 TIGR01858 tag_bisphos_ald clas 85.7 13 0.00028 36.0 11.8 57 286-343 69-130 (282)
149 PRK09195 gatY tagatose-bisphos 85.7 12 0.00027 36.2 11.7 57 286-343 71-132 (284)
150 PRK13587 1-(5-phosphoribosyl)- 85.6 23 0.00049 33.2 13.3 114 195-316 89-218 (234)
151 PRK12737 gatY tagatose-bisphos 85.2 8.5 0.00018 37.3 10.3 57 286-343 71-132 (284)
152 PLN02411 12-oxophytodienoate r 84.7 28 0.00061 35.4 14.3 122 193-317 167-340 (391)
153 cd07939 DRE_TIM_NifV Streptomy 84.7 21 0.00044 33.9 12.8 104 241-351 15-135 (259)
154 PF04131 NanE: Putative N-acet 84.7 22 0.00048 32.2 11.9 121 194-331 54-182 (192)
155 PRK09282 pyruvate carboxylase 84.6 43 0.00092 36.0 16.2 167 189-362 24-218 (592)
156 TIGR03128 RuMP_HxlA 3-hexulose 84.6 5.5 0.00012 36.2 8.5 96 242-345 8-108 (206)
157 PRK12737 gatY tagatose-bisphos 84.5 20 0.00044 34.7 12.6 115 195-319 88-232 (284)
158 cd00381 IMPDH IMPDH: The catal 84.5 44 0.00096 33.0 16.1 117 192-318 94-225 (325)
159 cd07937 DRE_TIM_PC_TC_5S Pyruv 84.3 40 0.00087 32.4 17.1 176 189-371 19-222 (275)
160 TIGR01858 tag_bisphos_ald clas 84.0 22 0.00048 34.4 12.6 138 156-319 63-230 (282)
161 PTZ00314 inosine-5'-monophosph 83.9 60 0.0013 34.1 16.7 118 194-321 243-375 (495)
162 PRK11858 aksA trans-homoaconit 83.9 18 0.00038 36.6 12.4 106 238-350 14-140 (378)
163 PRK09195 gatY tagatose-bisphos 83.8 23 0.0005 34.3 12.6 115 195-319 88-232 (284)
164 TIGR01305 GMP_reduct_1 guanosi 83.7 49 0.0011 32.9 16.7 129 188-348 78-221 (343)
165 PRK07709 fructose-bisphosphate 83.7 36 0.00077 33.0 13.9 115 195-319 91-233 (285)
166 PRK07709 fructose-bisphosphate 83.6 17 0.00036 35.3 11.6 54 289-343 77-135 (285)
167 PRK07315 fructose-bisphosphate 83.5 15 0.00032 35.8 11.3 54 289-343 77-134 (293)
168 PRK14041 oxaloacetate decarbox 83.2 62 0.0013 33.7 16.4 167 189-362 23-217 (467)
169 PRK06801 hypothetical protein; 82.9 28 0.00061 33.8 12.9 121 195-320 88-234 (286)
170 cd04728 ThiG Thiazole synthase 82.6 27 0.00059 33.0 12.1 121 183-318 68-203 (248)
171 PRK05835 fructose-bisphosphate 82.4 23 0.0005 34.7 12.1 57 286-343 70-132 (307)
172 cd06556 ICL_KPHMT Members of t 82.3 16 0.00035 34.4 10.7 95 189-294 87-196 (240)
173 PRK08610 fructose-bisphosphate 82.2 14 0.00031 35.8 10.5 53 290-343 78-135 (286)
174 TIGR02090 LEU1_arch isopropylm 82.1 23 0.0005 35.5 12.4 103 238-347 10-133 (363)
175 PRK07998 gatY putative fructos 81.8 21 0.00045 34.6 11.4 56 286-342 71-131 (283)
176 PRK12738 kbaY tagatose-bisphos 81.8 31 0.00067 33.5 12.7 138 156-319 65-232 (286)
177 PRK08610 fructose-bisphosphate 81.7 47 0.001 32.2 13.9 115 195-319 91-233 (286)
178 TIGR01302 IMP_dehydrog inosine 81.3 50 0.0011 34.2 14.9 118 192-319 224-356 (450)
179 TIGR03217 4OH_2_O_val_ald 4-hy 81.3 31 0.00066 34.3 12.8 141 197-341 93-246 (333)
180 TIGR00167 cbbA ketose-bisphosp 81.3 26 0.00056 34.0 12.0 57 286-343 72-135 (288)
181 PF01081 Aldolase: KDPG and KH 81.2 29 0.00063 31.7 11.6 143 185-348 14-157 (196)
182 PRK09140 2-dehydro-3-deoxy-6-p 81.0 24 0.00051 32.5 11.1 95 244-352 20-117 (206)
183 TIGR02660 nifV_homocitr homoci 80.8 27 0.00059 35.0 12.5 106 238-350 11-137 (365)
184 PRK12857 fructose-1,6-bisphosp 80.7 23 0.0005 34.3 11.4 57 286-343 71-132 (284)
185 PRK08185 hypothetical protein; 80.7 25 0.00054 34.1 11.6 57 286-343 65-126 (283)
186 PF00682 HMGL-like: HMGL-like 80.7 46 0.001 30.8 13.3 93 223-316 114-210 (237)
187 PF13714 PEP_mutase: Phosphoen 80.4 18 0.00038 34.2 10.3 123 186-317 79-217 (238)
188 cd04729 NanE N-acetylmannosami 80.3 48 0.001 30.5 14.4 109 195-318 83-205 (219)
189 PRK07807 inosine 5-monophospha 80.2 13 0.00028 38.8 10.2 116 192-318 227-358 (479)
190 PRK14041 oxaloacetate decarbox 80.2 80 0.0017 32.9 16.5 125 196-321 100-230 (467)
191 cd02812 PcrB_like PcrB_like pr 80.1 13 0.00028 34.6 9.0 79 235-318 124-203 (219)
192 cd07944 DRE_TIM_HOA_like 4-hyd 80.0 37 0.0008 32.5 12.5 94 200-294 91-188 (266)
193 cd02809 alpha_hydroxyacid_oxid 79.9 61 0.0013 31.5 14.6 108 244-359 127-247 (299)
194 TIGR01521 FruBisAldo_II_B fruc 79.8 18 0.0004 36.0 10.5 57 286-343 69-138 (347)
195 PRK09282 pyruvate carboxylase 79.6 65 0.0014 34.7 15.3 127 194-321 99-231 (592)
196 TIGR01303 IMP_DH_rel_1 IMP deh 79.5 69 0.0015 33.5 15.2 117 192-318 225-356 (475)
197 TIGR01108 oadA oxaloacetate de 79.2 96 0.0021 33.3 16.5 162 189-355 19-208 (582)
198 PRK08195 4-hyroxy-2-oxovalerat 79.0 37 0.0008 33.7 12.6 141 197-341 94-247 (337)
199 cd04722 TIM_phosphate_binding 79.0 42 0.00091 29.2 12.0 112 197-318 77-198 (200)
200 TIGR01302 IMP_dehydrog inosine 78.8 46 0.00099 34.5 13.6 110 233-351 211-339 (450)
201 PRK09196 fructose-1,6-bisphosp 78.6 30 0.00065 34.5 11.6 56 287-343 72-140 (347)
202 PF00290 Trp_syntA: Tryptophan 78.4 46 0.001 31.8 12.5 136 181-318 14-225 (259)
203 PRK05567 inosine 5'-monophosph 78.4 39 0.00085 35.3 13.1 114 232-352 214-344 (486)
204 PRK13399 fructose-1,6-bisphosp 77.9 22 0.00048 35.4 10.5 57 286-343 71-140 (347)
205 PRK08318 dihydropyrimidine deh 77.8 48 0.001 33.9 13.4 153 180-340 101-309 (420)
206 cd07948 DRE_TIM_HCS Saccharomy 77.6 32 0.0007 32.8 11.3 99 241-346 17-132 (262)
207 TIGR00167 cbbA ketose-bisphosp 77.5 49 0.0011 32.2 12.5 116 195-319 91-236 (288)
208 PRK00208 thiG thiazole synthas 77.3 67 0.0014 30.5 13.8 121 183-318 68-203 (250)
209 PRK05437 isopentenyl pyrophosp 77.3 78 0.0017 31.6 14.4 99 220-319 108-217 (352)
210 PRK12999 pyruvate carboxylase; 77.2 82 0.0018 36.8 16.2 167 189-362 553-755 (1146)
211 PF04551 GcpE: GcpE protein; 77.2 11 0.00024 37.4 8.0 99 243-346 28-138 (359)
212 PRK07807 inosine 5-monophospha 77.1 63 0.0014 33.8 14.1 61 289-351 268-342 (479)
213 PRK12857 fructose-1,6-bisphosp 77.0 58 0.0012 31.6 12.9 115 195-319 88-232 (284)
214 TIGR01303 IMP_DH_rel_1 IMP deh 76.6 65 0.0014 33.7 14.0 113 234-351 213-340 (475)
215 PRK14042 pyruvate carboxylase 76.3 1.2E+02 0.0026 32.7 18.1 149 190-341 94-255 (596)
216 PRK09234 fbiC FO synthase; Rev 76.1 22 0.00048 39.8 10.9 127 189-348 558-688 (843)
217 PLN02495 oxidoreductase, actin 75.6 50 0.0011 33.5 12.5 99 216-316 97-211 (385)
218 PLN02746 hydroxymethylglutaryl 75.3 39 0.00084 33.8 11.5 93 242-343 64-179 (347)
219 TIGR02321 Pphn_pyruv_hyd phosp 75.0 85 0.0018 30.5 13.5 104 187-294 86-210 (290)
220 PRK12331 oxaloacetate decarbox 74.9 1.1E+02 0.0024 31.7 17.0 147 194-341 99-255 (448)
221 PF00478 IMPDH: IMP dehydrogen 74.8 64 0.0014 32.3 12.8 96 247-348 108-220 (352)
222 cd07943 DRE_TIM_HOA 4-hydroxy- 74.6 56 0.0012 31.0 12.1 97 197-294 91-190 (263)
223 PRK07084 fructose-bisphosphate 74.1 44 0.00094 33.0 11.2 54 289-343 85-143 (321)
224 PF00682 HMGL-like: HMGL-like 74.0 60 0.0013 30.0 12.0 174 189-371 12-211 (237)
225 PLN02858 fructose-bisphosphate 73.7 67 0.0015 38.2 14.6 102 239-343 1118-1227(1378)
226 PRK12999 pyruvate carboxylase; 73.5 86 0.0019 36.6 15.1 151 190-341 625-792 (1146)
227 COG0821 gcpE 1-hydroxy-2-methy 73.4 1E+02 0.0022 30.6 14.5 102 189-302 34-136 (361)
228 cd00452 KDPG_aldolase KDPG and 73.3 50 0.0011 29.6 10.9 91 244-348 14-106 (190)
229 PRK08185 hypothetical protein; 73.3 89 0.0019 30.3 13.1 119 195-319 82-228 (283)
230 cd03174 DRE_TIM_metallolyase D 73.1 60 0.0013 30.4 12.0 100 195-294 78-195 (265)
231 PRK14114 1-(5-phosphoribosyl)- 72.8 41 0.00088 31.7 10.5 109 195-310 86-209 (241)
232 TIGR01520 FruBisAldo_II_A fruc 72.7 35 0.00076 34.1 10.3 141 187-343 9-170 (357)
233 cd00947 TBP_aldolase_IIB Tagat 72.3 83 0.0018 30.4 12.6 113 197-319 85-226 (276)
234 PRK05692 hydroxymethylglutaryl 72.2 50 0.0011 32.0 11.2 93 242-343 22-137 (287)
235 PLN02274 inosine-5'-monophosph 71.7 1E+02 0.0022 32.5 14.1 110 194-318 250-379 (505)
236 cd06557 KPHMT-like Ketopantoat 71.5 29 0.00063 33.0 9.2 94 189-293 88-197 (254)
237 PF00977 His_biosynth: Histidi 71.2 6.5 0.00014 36.7 4.7 114 195-316 86-217 (229)
238 PLN02321 2-isopropylmalate syn 71.1 36 0.00079 36.8 10.8 109 238-348 96-233 (632)
239 cd07937 DRE_TIM_PC_TC_5S Pyruv 70.5 1E+02 0.0022 29.5 17.1 101 194-294 94-197 (275)
240 TIGR01108 oadA oxaloacetate de 70.2 1.6E+02 0.0035 31.6 16.9 151 190-341 89-250 (582)
241 PRK02048 4-hydroxy-3-methylbut 70.1 1.5E+02 0.0032 31.9 14.6 140 188-341 38-198 (611)
242 PLN02925 4-hydroxy-3-methylbut 70.1 37 0.0008 36.9 10.3 99 244-347 108-231 (733)
243 PRK06843 inosine 5-monophospha 70.0 1.3E+02 0.0029 30.6 15.3 128 179-318 142-284 (404)
244 PRK08508 biotin synthase; Prov 69.7 74 0.0016 30.6 11.8 21 325-345 136-156 (279)
245 TIGR01235 pyruv_carbox pyruvat 69.5 2.2E+02 0.0047 33.3 17.1 151 190-341 623-790 (1143)
246 PF01116 F_bP_aldolase: Fructo 69.4 15 0.00033 35.6 6.9 57 286-343 70-131 (287)
247 PRK15108 biotin synthase; Prov 69.3 75 0.0016 31.6 12.0 103 243-348 76-193 (345)
248 PRK12330 oxaloacetate decarbox 69.3 1.2E+02 0.0026 31.9 13.8 148 193-341 99-258 (499)
249 PRK05567 inosine 5'-monophosph 68.9 1.5E+02 0.0033 30.9 14.9 115 194-318 230-359 (486)
250 TIGR03128 RuMP_HxlA 3-hexulose 68.8 90 0.0019 28.1 12.0 124 185-321 6-135 (206)
251 PRK00278 trpC indole-3-glycero 68.7 55 0.0012 31.2 10.6 110 232-346 49-167 (260)
252 cd00453 FTBP_aldolase_II Fruct 68.3 76 0.0017 31.5 11.4 58 286-343 82-156 (340)
253 cd02811 IDI-2_FMN Isopentenyl- 68.0 1.3E+02 0.0028 29.7 16.0 138 221-360 101-276 (326)
254 cd04723 HisA_HisF Phosphoribos 67.7 78 0.0017 29.5 11.2 111 195-316 91-215 (233)
255 COG2513 PrpB PEP phosphonomuta 67.5 1.2E+02 0.0027 29.3 12.6 123 186-316 88-231 (289)
256 PRK09197 fructose-bisphosphate 67.4 47 0.001 33.2 9.9 58 286-343 89-163 (350)
257 cd00381 IMPDH IMPDH: The catal 67.2 1.3E+02 0.0029 29.6 15.6 69 290-360 136-218 (325)
258 TIGR00973 leuA_bact 2-isopropy 67.2 39 0.00084 35.5 9.9 107 238-350 11-141 (494)
259 PRK00694 4-hydroxy-3-methylbut 66.9 1.8E+02 0.004 31.0 16.3 141 188-342 42-203 (606)
260 CHL00162 thiG thiamin biosynth 66.7 1.2E+02 0.0026 28.9 14.7 126 183-319 76-218 (267)
261 PRK00694 4-hydroxy-3-methylbut 66.5 52 0.0011 34.9 10.3 99 244-347 43-166 (606)
262 PLN02389 biotin synthase 66.5 94 0.002 31.5 12.1 37 325-361 212-251 (379)
263 cd04726 KGPDC_HPS 3-Keto-L-gul 66.5 37 0.00079 30.5 8.6 95 242-344 9-108 (202)
264 COG0800 Eda 2-keto-3-deoxy-6-p 66.1 1.1E+02 0.0024 28.2 13.6 144 184-348 18-162 (211)
265 PRK02048 4-hydroxy-3-methylbut 65.5 49 0.0011 35.3 10.0 99 244-347 39-162 (611)
266 PRK09389 (R)-citramalate synth 65.5 1E+02 0.0022 32.4 12.5 103 238-347 12-135 (488)
267 PRK07107 inosine 5-monophospha 65.0 1.3E+02 0.0029 31.6 13.3 97 244-348 239-361 (502)
268 COG0107 HisF Imidazoleglycerol 64.9 46 0.001 31.2 8.6 153 179-342 75-253 (256)
269 TIGR01859 fruc_bis_ald_ fructo 64.8 1.2E+02 0.0027 29.2 12.2 121 195-320 88-231 (282)
270 cd07939 DRE_TIM_NifV Streptomy 64.8 1.3E+02 0.0028 28.5 15.7 51 242-292 135-185 (259)
271 COG1038 PycA Pyruvate carboxyl 64.6 1.4E+02 0.0029 33.3 13.1 126 190-316 628-766 (1149)
272 PRK07455 keto-hydroxyglutarate 64.4 84 0.0018 28.3 10.3 92 244-348 22-114 (187)
273 PRK00311 panB 3-methyl-2-oxobu 64.1 59 0.0013 31.2 9.6 94 189-293 91-200 (264)
274 KOG0053 Cystathionine beta-lya 63.8 13 0.00029 37.7 5.4 67 249-322 153-223 (409)
275 cd07948 DRE_TIM_HCS Saccharomy 63.6 1.3E+02 0.0028 28.7 12.0 49 244-292 139-187 (262)
276 PF05690 ThiG: Thiazole biosyn 63.6 1.3E+02 0.0029 28.3 12.6 126 183-319 68-204 (247)
277 cd03332 LMO_FMN L-Lactate 2-mo 63.4 1.8E+02 0.0038 29.6 14.5 83 272-360 240-329 (383)
278 PRK05718 keto-hydroxyglutarate 63.4 1.3E+02 0.0027 27.9 15.0 142 185-348 21-164 (212)
279 PF00248 Aldo_ket_red: Aldo/ke 62.5 1.2E+02 0.0027 28.5 11.8 159 188-351 14-193 (283)
280 cd04726 KGPDC_HPS 3-Keto-L-gul 61.9 1.2E+02 0.0026 27.1 11.9 114 197-318 70-185 (202)
281 PLN02979 glycolate oxidase 61.2 1.9E+02 0.0041 29.2 16.3 84 271-360 209-299 (366)
282 PRK13111 trpA tryptophan synth 61.2 1.5E+02 0.0033 28.2 15.1 163 179-351 14-212 (258)
283 cd04727 pdxS PdxS is a subunit 60.9 1.1E+02 0.0024 29.5 10.8 116 194-318 77-224 (283)
284 cd00452 KDPG_aldolase KDPG and 60.9 1.2E+02 0.0027 27.0 15.4 139 186-347 11-151 (190)
285 PRK07535 methyltetrahydrofolat 60.8 1.6E+02 0.0034 28.1 13.4 146 188-346 22-196 (261)
286 PRK13957 indole-3-glycerol-pho 60.7 1.2E+02 0.0027 28.7 11.0 94 249-347 64-159 (247)
287 TIGR00612 ispG_gcpE 1-hydroxy- 60.6 1.8E+02 0.004 28.9 14.8 134 188-341 31-166 (346)
288 PRK05835 fructose-bisphosphate 60.4 1.8E+02 0.0038 28.6 12.4 99 195-302 88-217 (307)
289 cd02809 alpha_hydroxyacid_oxid 60.0 1.7E+02 0.0037 28.3 13.3 120 189-318 127-255 (299)
290 COG3010 NanE Putative N-acetyl 59.9 1.5E+02 0.0032 27.5 12.2 109 194-316 88-207 (229)
291 COG5016 Pyruvate/oxaloacetate 59.8 2E+02 0.0042 29.5 12.5 167 190-362 27-220 (472)
292 PRK07094 biotin synthase; Prov 58.9 1.5E+02 0.0032 28.9 11.9 22 325-346 164-185 (323)
293 TIGR01235 pyruv_carbox pyruvat 58.9 3.6E+02 0.0077 31.7 16.8 160 191-355 553-748 (1143)
294 cd07941 DRE_TIM_LeuA3 Desulfob 58.9 1.3E+02 0.0029 28.7 11.3 100 242-347 16-140 (273)
295 PLN02274 inosine-5'-monophosph 58.3 1.1E+02 0.0024 32.3 11.3 110 234-351 236-363 (505)
296 PRK04128 1-(5-phosphoribosyl)- 57.4 1.6E+02 0.0036 27.3 13.6 125 180-319 75-212 (228)
297 PRK06256 biotin synthase; Vali 57.0 1.3E+02 0.0027 29.6 11.1 24 325-348 186-209 (336)
298 PRK07114 keto-hydroxyglutarate 56.4 1.7E+02 0.0037 27.2 15.9 141 186-348 22-167 (222)
299 cd00956 Transaldolase_FSA Tran 56.4 1.2E+02 0.0025 28.0 10.0 119 187-318 60-184 (211)
300 PRK07084 fructose-bisphosphate 56.3 2.1E+02 0.0046 28.2 13.2 96 195-297 99-225 (321)
301 COG0191 Fba Fructose/tagatose 56.0 64 0.0014 31.2 8.3 57 286-343 72-133 (286)
302 PF01116 F_bP_aldolase: Fructo 55.8 1.3E+02 0.0028 29.2 10.6 110 195-311 87-228 (287)
303 COG5016 Pyruvate/oxaloacetate 55.8 2.4E+02 0.0053 28.8 15.8 123 193-316 100-228 (472)
304 TIGR00510 lipA lipoate synthas 55.7 2E+02 0.0044 28.1 12.0 160 189-348 92-283 (302)
305 PRK11858 aksA trans-homoaconit 55.3 2.3E+02 0.0051 28.5 18.6 161 189-362 24-209 (378)
306 TIGR01521 FruBisAldo_II_B fruc 55.2 2.3E+02 0.005 28.3 12.3 112 195-313 87-270 (347)
307 cd00946 FBP_aldolase_IIA Class 55.1 1.2E+02 0.0026 30.2 10.4 57 286-343 84-158 (345)
308 PLN02493 probable peroxisomal 54.9 2.4E+02 0.0052 28.4 14.2 83 272-360 211-300 (367)
309 cd00331 IGPS Indole-3-glycerol 53.9 82 0.0018 28.8 8.6 108 232-346 10-128 (217)
310 cd07940 DRE_TIM_IPMS 2-isoprop 53.7 2E+02 0.0044 27.2 17.1 175 189-371 18-219 (268)
311 PRK08508 biotin synthase; Prov 53.6 2.1E+02 0.0046 27.4 13.3 150 188-338 40-216 (279)
312 PRK14040 oxaloacetate decarbox 53.2 3.2E+02 0.007 29.4 15.6 127 196-323 102-234 (593)
313 cd04728 ThiG Thiazole synthase 53.1 2E+02 0.0042 27.3 10.8 153 189-352 21-188 (248)
314 TIGR01919 hisA-trpF 1-(5-phosp 52.9 2E+02 0.0044 27.0 11.6 116 195-317 87-223 (243)
315 PRK00915 2-isopropylmalate syn 52.8 2.4E+02 0.0053 29.7 12.9 107 238-350 14-144 (513)
316 cd07945 DRE_TIM_CMS Leptospira 52.7 1E+02 0.0023 29.7 9.4 100 242-347 15-136 (280)
317 PRK09261 phospho-2-dehydro-3-d 52.2 1.9E+02 0.0041 28.9 11.1 124 232-365 53-206 (349)
318 PLN02446 (5-phosphoribosyl)-5- 52.0 2.2E+02 0.0048 27.2 11.9 122 195-321 95-241 (262)
319 PRK15063 isocitrate lyase; Pro 51.9 2.5E+02 0.0055 28.9 12.2 96 186-284 156-300 (428)
320 TIGR02090 LEU1_arch isopropylm 51.8 2.6E+02 0.0057 28.0 14.8 63 194-257 115-181 (363)
321 TIGR01520 FruBisAldo_II_A fruc 51.8 2.6E+02 0.0057 28.0 12.5 110 204-319 135-287 (357)
322 TIGR00977 LeuA_rel 2-isopropyl 49.8 2.9E+02 0.0062 29.3 12.8 105 238-347 11-143 (526)
323 cd00739 DHPS DHPS subgroup of 49.6 1.8E+02 0.0038 27.7 10.3 99 238-345 16-126 (257)
324 PRK00366 ispG 4-hydroxy-3-meth 49.5 2.9E+02 0.0062 27.7 15.6 133 189-341 40-175 (360)
325 PRK04180 pyridoxal biosynthesi 49.1 1.9E+02 0.0041 28.1 10.3 106 197-319 30-148 (293)
326 PRK12756 phospho-2-dehydro-3-d 48.7 2.2E+02 0.0048 28.4 10.8 124 233-366 53-206 (348)
327 PRK09196 fructose-1,6-bisphosp 48.6 2.9E+02 0.0064 27.6 13.3 116 196-319 90-277 (347)
328 TIGR02660 nifV_homocitr homoci 48.1 3E+02 0.0064 27.6 18.0 157 189-354 21-200 (365)
329 PTZ00170 D-ribulose-5-phosphat 47.9 2.2E+02 0.0048 26.4 10.6 122 187-318 74-200 (228)
330 COG2022 ThiG Uncharacterized e 47.9 2.5E+02 0.0053 26.5 14.1 143 183-339 75-228 (262)
331 PRK07315 fructose-bisphosphate 47.1 2.8E+02 0.0061 27.0 13.7 120 195-320 90-233 (293)
332 cd00423 Pterin_binding Pterin 46.7 1.4E+02 0.0031 28.2 9.2 68 274-347 61-128 (258)
333 PF00218 IGPS: Indole-3-glycer 46.4 90 0.0019 29.7 7.7 93 249-346 71-165 (254)
334 PLN02925 4-hydroxy-3-methylbut 46.4 4.4E+02 0.0095 29.0 16.1 67 188-258 107-177 (733)
335 TIGR00433 bioB biotin syntheta 46.3 2.7E+02 0.0059 26.5 11.4 23 325-347 157-179 (296)
336 cd02940 DHPD_FMN Dihydropyrimi 46.2 2.8E+02 0.0062 26.8 16.3 100 216-317 83-198 (299)
337 TIGR01496 DHPS dihydropteroate 46.1 2.7E+02 0.0058 26.4 14.0 64 188-251 20-94 (257)
338 PRK08883 ribulose-phosphate 3- 45.6 2.1E+02 0.0046 26.5 9.9 131 180-318 60-194 (220)
339 cd00946 FBP_aldolase_IIA Class 44.9 3.3E+02 0.0072 27.2 13.3 149 158-319 80-275 (345)
340 PRK13361 molybdenum cofactor b 44.8 3.1E+02 0.0068 26.8 12.7 138 188-344 45-188 (329)
341 PRK12581 oxaloacetate decarbox 44.6 3.9E+02 0.0085 27.9 17.6 121 196-317 110-236 (468)
342 cd04736 MDH_FMN Mandelate dehy 44.4 1.2E+02 0.0027 30.4 8.6 81 273-361 224-311 (361)
343 cd04737 LOX_like_FMN L-Lactate 44.2 3.4E+02 0.0074 27.1 13.9 74 273-352 209-289 (351)
344 PRK13398 3-deoxy-7-phosphohept 44.0 3E+02 0.0064 26.4 10.9 124 230-366 25-162 (266)
345 TIGR01496 DHPS dihydropteroate 44.0 1.9E+02 0.0041 27.5 9.6 98 238-344 15-123 (257)
346 PRK09722 allulose-6-phosphate 44.0 1.7E+02 0.0038 27.3 9.1 133 180-319 61-197 (229)
347 cd00958 DhnA Class I fructose- 43.8 2.6E+02 0.0057 25.7 13.2 120 189-316 74-211 (235)
348 TIGR02129 hisA_euk phosphoribo 43.8 3E+02 0.0064 26.3 10.9 119 195-319 88-233 (253)
349 PRK12822 phospho-2-dehydro-3-d 43.5 3.5E+02 0.0076 27.1 11.5 123 234-366 55-207 (356)
350 PF01645 Glu_synthase: Conserv 43.3 3.6E+02 0.0079 27.2 12.7 111 187-318 184-302 (368)
351 PRK03620 5-dehydro-4-deoxygluc 41.9 3.3E+02 0.0072 26.3 17.9 153 189-346 26-190 (303)
352 cd06556 ICL_KPHMT Members of t 41.6 3.1E+02 0.0066 25.8 11.4 73 216-295 57-131 (240)
353 PRK13307 bifunctional formalde 41.6 1.2E+02 0.0027 30.8 8.2 105 231-344 173-281 (391)
354 PRK12344 putative alpha-isopro 41.0 4.6E+02 0.01 27.7 12.9 107 238-347 15-147 (524)
355 PRK10060 RNase II stability mo 41.0 2.1E+02 0.0045 31.1 10.5 117 243-366 505-633 (663)
356 PRK12755 phospho-2-dehydro-3-d 41.0 2.8E+02 0.0062 27.7 10.4 123 233-365 55-207 (353)
357 PRK09240 thiH thiamine biosynt 40.9 1.5E+02 0.0032 29.9 8.7 67 187-260 103-174 (371)
358 PRK05692 hydroxymethylglutaryl 40.5 3.5E+02 0.0075 26.1 14.5 79 242-321 151-233 (287)
359 PRK13399 fructose-1,6-bisphosp 40.3 3.9E+02 0.0085 26.7 13.0 95 196-297 90-234 (347)
360 PRK00208 thiG thiazole synthas 40.3 3.3E+02 0.0072 25.9 10.9 153 189-352 22-188 (250)
361 COG1167 ARO8 Transcriptional r 40.2 1.6E+02 0.0035 30.4 9.1 97 245-347 164-268 (459)
362 TIGR01768 GGGP-family geranylg 39.0 2.1E+02 0.0046 26.7 8.7 73 238-318 126-207 (223)
363 PRK07455 keto-hydroxyglutarate 38.9 2.9E+02 0.0063 24.8 14.6 138 186-346 19-159 (187)
364 PLN03228 methylthioalkylmalate 38.7 3.1E+02 0.0067 28.9 10.9 121 239-361 99-245 (503)
365 PF04551 GcpE: GcpE protein; 38.6 2.6E+02 0.0057 28.0 9.6 112 183-301 23-143 (359)
366 TIGR00262 trpA tryptophan synt 38.5 3.5E+02 0.0076 25.6 13.3 113 194-318 105-226 (256)
367 COG0119 LeuA Isopropylmalate/h 38.0 2.7E+02 0.0059 28.5 10.1 107 238-352 12-145 (409)
368 TIGR00343 pyridoxal 5'-phospha 36.9 3.2E+02 0.007 26.5 9.7 86 218-320 54-142 (287)
369 PRK12457 2-dehydro-3-deoxyphos 36.5 1.9E+02 0.0042 27.9 8.2 62 275-344 74-135 (281)
370 COG1453 Predicted oxidoreducta 35.8 4.8E+02 0.01 26.4 12.3 151 189-344 32-201 (391)
371 PLN02858 fructose-bisphosphate 35.7 4.5E+02 0.0098 31.5 12.7 132 178-318 1169-1330(1378)
372 cd04731 HisF The cyclase subun 35.3 2.2E+02 0.0048 26.4 8.5 60 273-339 59-118 (243)
373 PF12040 DUF3526: Domain of un 35.2 82 0.0018 27.4 5.2 49 221-280 4-52 (156)
374 TIGR00343 pyridoxal 5'-phospha 35.1 3.1E+02 0.0066 26.6 9.3 40 273-317 185-226 (287)
375 PLN02535 glycolate oxidase 34.7 4.9E+02 0.011 26.2 17.2 83 272-360 210-299 (364)
376 PF02310 B12-binding: B12 bind 34.7 2.4E+02 0.0052 22.6 7.8 72 276-348 16-90 (121)
377 cd02808 GltS_FMN Glutamate syn 34.6 3.5E+02 0.0077 27.4 10.4 86 275-360 199-306 (392)
378 PF09872 DUF2099: Uncharacteri 34.5 1.9E+02 0.0041 27.4 7.5 57 197-255 155-212 (258)
379 PRK04169 geranylgeranylglycery 34.5 2.7E+02 0.0058 26.2 8.7 72 242-318 136-212 (232)
380 KOG2368 Hydroxymethylglutaryl- 34.2 3.2E+02 0.0069 25.7 8.8 63 299-361 94-175 (316)
381 TIGR03551 F420_cofH 7,8-dideme 34.2 3.4E+02 0.0073 26.8 10.0 25 323-347 176-200 (343)
382 PF11590 DNAPolymera_Pol: DNA 33.9 47 0.001 22.0 2.5 35 196-230 3-37 (41)
383 TIGR00034 aroFGH phospho-2-deh 33.8 5E+02 0.011 26.0 11.5 122 233-364 49-200 (344)
384 PF01136 Peptidase_U32: Peptid 33.8 1.5E+02 0.0033 27.2 7.1 57 192-255 3-59 (233)
385 PRK08318 dihydropyrimidine deh 33.7 5.3E+02 0.011 26.2 15.6 99 217-317 84-198 (420)
386 PRK13111 trpA tryptophan synth 33.6 4.3E+02 0.0092 25.1 12.2 96 244-347 24-150 (258)
387 cd07947 DRE_TIM_Re_CS Clostrid 33.5 4.4E+02 0.0096 25.3 10.4 97 243-346 18-135 (279)
388 TIGR03700 mena_SCO4494 putativ 33.5 3.6E+02 0.0078 26.8 10.1 24 325-348 187-210 (351)
389 PRK04180 pyridoxal biosynthesi 33.4 1.8E+02 0.0039 28.2 7.5 40 273-317 191-232 (293)
390 KOG0780 Signal recognition par 33.4 5.5E+02 0.012 26.4 13.4 63 189-251 167-236 (483)
391 PRK06806 fructose-bisphosphate 33.2 4.5E+02 0.0098 25.3 16.5 118 195-319 88-230 (281)
392 cd04732 HisA HisA. Phosphorib 33.1 2.1E+02 0.0046 26.2 8.0 61 273-340 61-121 (234)
393 PF00478 IMPDH: IMP dehydrogen 32.8 4.6E+02 0.01 26.3 10.5 137 179-321 97-242 (352)
394 TIGR03849 arch_ComA phosphosul 32.5 64 0.0014 30.4 4.2 83 300-398 10-99 (237)
395 TIGR01290 nifB nitrogenase cof 32.5 2.3E+02 0.0049 29.4 8.6 64 188-251 60-129 (442)
396 PRK07695 transcriptional regul 32.3 3.7E+02 0.0081 24.1 12.2 80 223-317 86-175 (201)
397 TIGR00423 radical SAM domain p 32.3 1.9E+02 0.0041 28.1 7.7 49 188-236 36-88 (309)
398 cd00951 KDGDH 5-dehydro-4-deox 32.2 4.6E+02 0.01 25.1 17.6 153 189-346 19-183 (289)
399 PRK00748 1-(5-phosphoribosyl)- 31.9 3.5E+02 0.0077 24.7 9.3 42 272-318 61-102 (233)
400 PF00600 Flu_NS1: Influenza no 31.5 1.4E+02 0.003 26.6 5.8 48 59-109 129-179 (217)
401 PRK05096 guanosine 5'-monophos 31.5 5.4E+02 0.012 25.7 13.1 122 194-319 110-242 (346)
402 PF01180 DHO_dh: Dihydroorotat 31.5 3.7E+02 0.0079 25.8 9.6 138 178-319 96-273 (295)
403 cd07938 DRE_TIM_HMGL 3-hydroxy 31.5 4.7E+02 0.01 25.0 11.1 93 242-343 16-131 (274)
404 PRK01033 imidazole glycerol ph 31.4 4.5E+02 0.0098 24.8 12.5 148 193-349 32-206 (258)
405 cd04724 Tryptophan_synthase_al 31.4 4.4E+02 0.0095 24.6 11.2 103 244-351 12-141 (242)
406 PRK11197 lldD L-lactate dehydr 31.4 4E+02 0.0088 27.0 10.0 80 273-360 233-321 (381)
407 PF01070 FMN_dh: FMN-dependent 31.2 2.2E+02 0.0049 28.4 8.2 85 272-362 212-303 (356)
408 PRK05198 2-dehydro-3-deoxyphos 31.1 4.8E+02 0.01 25.0 10.7 62 275-344 68-129 (264)
409 PF01408 GFO_IDH_MocA: Oxidore 30.9 1.6E+02 0.0035 23.5 6.1 106 219-345 12-119 (120)
410 TIGR01306 GMP_reduct_2 guanosi 30.8 5.4E+02 0.012 25.4 14.8 115 194-319 96-227 (321)
411 PRK13396 3-deoxy-7-phosphohept 30.7 5.6E+02 0.012 25.7 12.1 144 186-344 110-276 (352)
412 PRK08444 hypothetical protein; 30.4 3.9E+02 0.0084 26.7 9.7 29 320-348 183-211 (353)
413 PLN02591 tryptophan synthase 30.3 4.8E+02 0.01 24.7 11.2 57 285-344 74-136 (250)
414 COG0656 ARA1 Aldo/keto reducta 30.1 5.2E+02 0.011 25.0 12.5 150 191-349 28-193 (280)
415 cd04729 NanE N-acetylmannosami 29.9 4.3E+02 0.0093 24.0 14.5 145 187-349 23-187 (219)
416 TIGR00262 trpA tryptophan synt 29.9 4.8E+02 0.011 24.7 11.7 60 288-351 86-152 (256)
417 PRK11840 bifunctional sulfur c 29.9 5.6E+02 0.012 25.4 16.0 124 183-319 142-278 (326)
418 cd06557 KPHMT-like Ketopantoat 29.8 3.6E+02 0.0078 25.7 8.9 71 216-293 57-131 (254)
419 cd00954 NAL N-Acetylneuraminic 29.7 5E+02 0.011 24.8 15.4 148 189-345 19-187 (288)
420 TIGR01305 GMP_reduct_1 guanosi 29.6 5.8E+02 0.013 25.5 15.3 118 194-319 109-241 (343)
421 cd04724 Tryptophan_synthase_al 29.6 4.7E+02 0.01 24.4 14.0 26 245-270 115-140 (242)
422 PRK13587 1-(5-phosphoribosyl)- 29.6 2.1E+02 0.0046 26.7 7.3 63 273-342 64-126 (234)
423 PRK14057 epimerase; Provisiona 29.4 4.8E+02 0.01 24.8 9.6 158 184-362 25-212 (254)
424 PRK00311 panB 3-methyl-2-oxobu 29.4 4E+02 0.0088 25.5 9.2 71 216-293 60-134 (264)
425 cd07941 DRE_TIM_LeuA3 Desulfob 29.3 5.1E+02 0.011 24.7 17.5 176 189-371 18-225 (273)
426 TIGR03699 mena_SCO4550 menaqui 29.1 2.9E+02 0.0063 27.1 8.6 104 243-349 72-204 (340)
427 COG0134 TrpC Indole-3-glycerol 28.9 2.9E+02 0.0063 26.3 8.0 95 243-346 66-163 (254)
428 COG0042 tRNA-dihydrouridine sy 28.7 2.6E+02 0.0057 27.5 8.1 60 194-255 155-220 (323)
429 PF00701 DHDPS: Dihydrodipicol 28.1 5.3E+02 0.012 24.5 12.1 152 189-345 20-186 (289)
430 COG2896 MoaA Molybdenum cofact 28.1 4.6E+02 0.01 25.9 9.5 73 194-266 101-187 (322)
431 TIGR03551 F420_cofH 7,8-dideme 28.0 3.9E+02 0.0085 26.3 9.3 71 188-261 70-153 (343)
432 COG2403 Predicted GTPase [Gene 28.0 1.7E+02 0.0036 29.7 6.3 61 287-350 60-120 (449)
433 COG1619 LdcA Uncharacterized p 27.8 2.2E+02 0.0048 28.0 7.3 61 190-253 25-95 (313)
434 cd00245 Glm_e Coenzyme B12-dep 27.7 5.9E+02 0.013 26.3 10.5 139 195-343 5-167 (428)
435 PF02548 Pantoate_transf: Keto 27.7 3.3E+02 0.0071 26.1 8.1 75 215-296 60-138 (261)
436 PRK07360 FO synthase subunit 2 27.6 5.1E+02 0.011 25.9 10.1 27 322-348 197-223 (371)
437 PRK08444 hypothetical protein; 27.2 3.5E+02 0.0076 27.0 8.7 49 188-236 80-132 (353)
438 PRK13361 molybdenum cofactor b 27.2 4.3E+02 0.0093 25.9 9.4 75 195-270 105-193 (329)
439 TIGR00222 panB 3-methyl-2-oxob 27.1 5.7E+02 0.012 24.5 12.1 92 189-293 90-199 (263)
440 PRK15108 biotin synthase; Prov 26.6 6.4E+02 0.014 25.0 10.9 114 188-304 76-205 (345)
441 smart00052 EAL Putative diguan 26.6 3.6E+02 0.0078 24.2 8.3 63 287-351 144-214 (241)
442 PRK07360 FO synthase subunit 2 26.5 1.9E+02 0.0041 29.0 6.8 71 188-261 91-175 (371)
443 PRK13586 1-(5-phosphoribosyl)- 26.5 5.3E+02 0.012 24.0 12.5 113 195-316 86-215 (232)
444 KOG0259 Tyrosine aminotransfer 26.4 1E+02 0.0022 31.2 4.6 46 299-344 187-237 (447)
445 TIGR02666 moaA molybdenum cofa 26.4 4.5E+02 0.0097 25.6 9.4 72 196-267 104-190 (334)
446 PRK02083 imidazole glycerol ph 26.4 3.4E+02 0.0075 25.3 8.2 61 272-339 61-121 (253)
447 PLN02460 indole-3-glycerol-pho 26.4 4E+02 0.0088 26.5 8.8 97 242-346 138-237 (338)
448 PRK09389 (R)-citramalate synth 26.2 7.8E+02 0.017 25.8 18.6 49 189-237 22-70 (488)
449 TIGR01362 KDO8P_synth 3-deoxy- 26.1 4.5E+02 0.0098 25.1 8.7 29 286-318 70-98 (258)
450 cd01310 TatD_DNAse TatD like p 26.0 4.8E+02 0.01 23.7 9.1 18 330-347 134-153 (251)
451 cd00453 FTBP_aldolase_II Fruct 26.0 6.7E+02 0.015 25.0 13.5 145 156-320 76-273 (340)
452 COG2200 Rtn c-di-GMP phosphodi 25.8 3.3E+02 0.0072 25.6 8.0 72 277-351 138-217 (256)
453 PLN02334 ribulose-phosphate 3- 25.5 5.3E+02 0.012 23.7 11.1 122 187-318 74-201 (229)
454 COG0269 SgbH 3-hexulose-6-phos 25.3 5.2E+02 0.011 24.0 8.7 106 231-347 4-114 (217)
455 PLN03033 2-dehydro-3-deoxyphos 25.2 6.1E+02 0.013 24.6 9.4 28 314-341 131-159 (290)
456 PRK04165 acetyl-CoA decarbonyl 24.9 8E+02 0.017 25.5 12.2 16 325-340 211-226 (450)
457 COG0106 HisA Phosphoribosylfor 24.8 2.6E+02 0.0055 26.5 6.7 66 272-344 62-127 (241)
458 cd02811 IDI-2_FMN Isopentenyl- 24.7 6.7E+02 0.015 24.6 13.1 29 289-318 255-283 (326)
459 PF02581 TMP-TENI: Thiamine mo 24.7 2.5E+02 0.0053 24.8 6.5 46 302-348 16-65 (180)
460 TIGR01036 pyrD_sub2 dihydrooro 24.4 6.9E+02 0.015 24.7 10.2 127 189-318 152-316 (335)
461 COG2084 MmsB 3-hydroxyisobutyr 24.3 5.9E+02 0.013 24.7 9.4 77 233-321 88-164 (286)
462 PRK11613 folP dihydropteroate 24.0 6.6E+02 0.014 24.3 10.0 96 238-344 30-138 (282)
463 PRK06843 inosine 5-monophospha 23.3 8.1E+02 0.018 25.0 12.2 60 290-351 195-268 (404)
464 PLN02389 biotin synthase 23.3 7.8E+02 0.017 24.8 13.6 147 187-338 115-295 (379)
465 PF05913 DUF871: Bacterial pro 23.2 1.7E+02 0.0038 29.3 5.7 142 189-343 12-173 (357)
466 PRK12928 lipoyl synthase; Prov 23.1 5.8E+02 0.013 24.7 9.2 107 242-349 86-213 (290)
467 COG0269 SgbH 3-hexulose-6-phos 23.1 6.1E+02 0.013 23.5 12.3 125 196-336 72-206 (217)
468 PRK09279 pyruvate phosphate di 22.9 9E+02 0.019 27.5 11.6 86 235-324 764-861 (879)
469 PRK14847 hypothetical protein; 22.5 6.9E+02 0.015 24.8 9.6 102 232-340 37-165 (333)
470 TIGR03249 KdgD 5-dehydro-4-deo 22.4 7E+02 0.015 23.9 17.6 152 189-345 24-187 (296)
471 PRK11613 folP dihydropteroate 22.3 3.3E+02 0.0073 26.3 7.3 54 188-242 35-100 (282)
472 PRK15454 ethanol dehydrogenase 22.2 6E+02 0.013 25.7 9.5 112 290-410 52-168 (395)
473 COG0502 BioB Biotin synthase a 22.1 7.9E+02 0.017 24.5 13.3 149 188-338 84-260 (335)
474 PLN02746 hydroxymethylglutaryl 22.0 8E+02 0.017 24.5 15.1 37 221-257 201-237 (347)
475 TIGR03700 mena_SCO4494 putativ 21.9 3.6E+02 0.0079 26.7 7.8 49 188-236 79-131 (351)
476 TIGR02351 thiH thiazole biosyn 21.7 4E+02 0.0087 26.6 8.0 66 188-260 103-173 (366)
477 TIGR00007 phosphoribosylformim 21.7 3.8E+02 0.0083 24.5 7.4 60 273-339 60-119 (230)
478 PRK04165 acetyl-CoA decarbonyl 21.7 9.2E+02 0.02 25.1 14.9 143 189-346 103-268 (450)
479 PLN02446 (5-phosphoribosyl)-5- 21.6 7.2E+02 0.016 23.8 11.1 148 194-348 46-216 (262)
480 PRK07226 fructose-bisphosphate 21.5 7E+02 0.015 23.6 13.2 114 193-313 95-226 (267)
481 PRK14024 phosphoribosyl isomer 21.4 3.1E+02 0.0066 25.6 6.7 36 273-312 63-98 (241)
482 PRK13802 bifunctional indole-3 21.3 7.6E+02 0.016 27.3 10.4 93 249-346 73-167 (695)
483 KOG2367 Alpha-isopropylmalate 21.2 7.7E+02 0.017 25.9 9.7 102 240-346 73-195 (560)
484 PRK05443 polyphosphate kinase; 21.1 2.1E+02 0.0045 31.5 6.1 76 186-262 346-425 (691)
485 COG1410 MetH Methionine syntha 21.0 5.8E+02 0.013 28.3 9.2 72 286-360 95-168 (842)
486 PRK05927 hypothetical protein; 20.9 2.8E+02 0.006 27.7 6.7 64 188-251 76-152 (350)
487 PRK08091 ribulose-phosphate 3- 20.9 6.7E+02 0.015 23.4 8.8 131 180-318 70-206 (228)
488 KOG4141 DNA repair and recombi 20.9 1.4E+02 0.0029 27.6 3.9 50 31-92 75-128 (222)
489 cd07938 DRE_TIM_HMGL 3-hydroxy 20.8 7.4E+02 0.016 23.6 15.4 79 242-321 145-227 (274)
490 smart00857 Resolvase Resolvase 20.7 2.7E+02 0.0059 23.2 5.8 44 302-345 55-101 (148)
491 PF00608 Adeno_shaft: Adenovir 20.7 76 0.0017 19.5 1.7 22 384-405 9-30 (30)
492 cd00739 DHPS DHPS subgroup of 20.6 7.3E+02 0.016 23.5 14.8 62 188-250 21-94 (257)
493 cd07945 DRE_TIM_CMS Leptospira 20.6 7.1E+02 0.015 23.9 9.2 68 189-257 109-187 (280)
494 PRK08745 ribulose-phosphate 3- 20.4 6.9E+02 0.015 23.1 10.3 132 180-319 64-199 (223)
495 PRK07565 dihydroorotate dehydr 20.3 8.2E+02 0.018 23.9 12.2 22 331-352 231-252 (334)
496 COG0107 HisF Imidazoleglycerol 20.2 7.4E+02 0.016 23.4 8.9 56 287-345 72-127 (256)
497 CHL00200 trpA tryptophan synth 20.1 7.6E+02 0.017 23.5 11.1 49 300-351 107-156 (263)
No 1
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=100.00 E-value=2e-70 Score=548.51 Aligned_cols=354 Identities=25% Similarity=0.399 Sum_probs=317.4
Q ss_pred EeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHH-HHhHHHcCCCCC
Q 015161 48 VQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKAS-EACEVLKESPAM 124 (412)
Q Consensus 48 I~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~-~~~~~l~g~~~~ 124 (412)
|++|+++++++|++.||+++.++...++.++|||+|++|++||||+.+. |.+++++...+...++ .++|.++|+++.
T Consensus 1 I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~ 80 (368)
T TIGR02534 1 IQSVETILVDVPTIRPHKLATTTMTEQTLVLVRIRTEDGVIGYGEGTTIGGLWWGGESPETIKANIDTYLAPVLVGRDAT 80 (368)
T ss_pred CeEEEEEEEeccccCceEEeeEEEeeccEEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCChh
Confidence 7899999999999999999999999999999999999999999999865 4566666555445554 589999999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH-H
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR-K 202 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~-~ 202 (412)
+++.+++.+.+.+.++. .+++|||+||||++||.+|+|+|+||||. ++++|+|++++..++++..+.++++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~-----~a~said~AlwDl~gK~~g~Pv~~LLGg~~r~~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (368)
T TIGR02534 81 EIAAIMADLEKVVAGNR-----FAKAAVDTALHDAQARRLGVPVSELLGGRVRDSVDVTWTLASGDTDRDIAEAEERIEE 155 (368)
T ss_pred hHHHHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCceEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 99999988877554332 27999999999999999999999999996 67899999888777766556666655 5
Q ss_pred cCCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 203 QGFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 203 ~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
+||++||+|+| .++++|+++|+++|++ ++++.|++|+|++|++++|++++++|+++++ .|||||++++|++++++|
T Consensus 156 ~Gf~~~KiKvg~~~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~d~~~~~~l 233 (368)
T TIGR02534 156 KRHRSFKLKIGARDPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGV--ELIEQPTPAENREALARL 233 (368)
T ss_pred cCcceEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCh--hheECCCCcccHHHHHHH
Confidence 89999999998 4788999999999997 7899999999999999999999999999987 499999999999999998
Q ss_pred HHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 281 SHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 281 ~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|
T Consensus 234 ~~----~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i~~aa~~h 309 (368)
T TIGR02534 234 TR----RFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPIGTIASAH 309 (368)
T ss_pred HH----hCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHHHHHHHHH
Confidence 75 68899999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 360 LSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 360 laaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++++++.+ .|+++++.+.++++.++++++||++++|++||||+++|++.++
T Consensus 310 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~~~ 363 (368)
T TIGR02534 310 FFATFPALSFGTELFGPLLLKDEILTEPLQYEDFQLHLPQGPGLGVEVDEDKVN 363 (368)
T ss_pred HHHhCCCCccccccccHHHhhhccccCCceeeCCEEecCCCCcCCcccCHHHHH
Confidence 9999999877 5777776666788888899999999999999999999998763
No 2
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=3.6e-70 Score=546.39 Aligned_cols=355 Identities=26% Similarity=0.396 Sum_probs=321.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC--ccCcccHHHHHHHHH-HHhHHHcCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP--HVTAEDQQTAMVKAS-EACEVLKESPA 123 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~~~~~~~~~-~~~~~l~g~~~ 123 (412)
||++++++++++|++.||.++.++.+.++.++|||+|++|++||||+.+.+ .+++++...+...++ .+.|.++|+++
T Consensus 1 ~I~~i~~~~~~lpl~~~~~~~~~~~~~~~~~~V~v~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~~~ 80 (365)
T cd03318 1 KIEAIETTIVDLPTRRPHQFAGTTMHTQSLVLVRLTTSDGVVGIGEATTPGGPAWGGESPETIKAIIDRYLAPLLIGRDA 80 (365)
T ss_pred CeEEEEEEEEeccccCceEEeeeeEeecceEEEEEEECCCCeEEEecCCCCCCccCCCCHHHHHHHHHHhhHHHHcCCCh
Confidence 699999999999999999999999999999999999999999999998653 455666555555555 47899999999
Q ss_pred CCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 124 MALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 124 ~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
.+++.+++.|++...++. .+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.++++++++
T Consensus 81 ~~~~~~~~~l~~~~~~~~-----~a~said~AlwDl~gK~~g~Pl~~LLGg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 155 (365)
T cd03318 81 TNIGAAMALLDRAVAGNL-----FAKAAIEMALLDAQGRRLGLPVSELLGGRVRDSLPVAWTLASGDTERDIAEAEEMLE 155 (365)
T ss_pred HHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHHHHhHcCCCHHHHcCCCcCCceEEEEEEeCCCHHHHHHHHHHHHh
Confidence 999999999877544432 37899999999999999999999999996 678999998887788888888888999
Q ss_pred cC-CCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 203 QG-FTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 203 ~G-f~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
+| |++||+|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~G~f~~~KiKvg~~~~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~--~~iEeP~~~~~~~~~~~ 233 (365)
T cd03318 156 AGRHRRFKLKMGARPPADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGV--ELIEQPVPRENLDGLAR 233 (365)
T ss_pred CCCceEEEEEeCCCChHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCc--ceeeCCCCcccHHHHHH
Confidence 99 9999999994 788999999999998 6799999999999999999999999999997 49999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+++++.++++
T Consensus 234 l~~----~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~i~~aa~~ 309 (365)
T cd03318 234 LRS----RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESSIGTAASA 309 (365)
T ss_pred HHh----hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhHHHHHHHH
Confidence 975 68899999999999999999999999999999999998 9999999999999999999999999999999999
Q ss_pred HHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 359 HLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 359 hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
|+++++++..+ .|+++++.+.+|++.++++++||++.+|++||||+++|++.++
T Consensus 310 hlaaa~~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~~d~~~l~ 364 (365)
T cd03318 310 HLFATLPSLPFGCELFGPLLLAEDLLEEPLAYRDGELHVPTGPGLGVRLDEDKVR 364 (365)
T ss_pred HHHHhCCCCcccccccchHhhhcccccCCceeECCEEeCCCCCcCCcccCHHHhc
Confidence 99999998777 6777776666788888889999999999999999999999875
No 3
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.6e-67 Score=525.28 Aligned_cols=346 Identities=25% Similarity=0.409 Sum_probs=309.0
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCCCCCHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (412)
|+++++++|+++||+++.++.+.++.++|||+|++|++||||+.+. +++++|+...+...+++ +.|.++|+++.+++
T Consensus 1 ~~~~~~~~pl~~p~~~~~~~~~~~~~~~Vrv~t~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~p~l~g~~~~~~~ 80 (354)
T cd03317 1 IELFHVRMPLKFPFETSFGTLNEREFLIVELTDEEGITGYGEVVAFEGPFYTEETNATAWHILKDYLLPLLLGREFSHPE 80 (354)
T ss_pred CEEEEEEecccCceEccceEEEeeeEEEEEEEECCCCeEEEecCCCCCCcccCCCHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 5788999999999999999999999999999999999999999864 56777877666666654 78999999999999
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCH-HHHHHHHHHHHHcCCC
Q 015161 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSP-AEAAELASKYRKQGFT 206 (412)
Q Consensus 128 ~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~Gf~ 206 (412)
.+++.+.+ +.++. .+++||||||||++||.+|+|+|+||||.++++|+|.+++..++ +++.+++++++++||+
T Consensus 81 ~~~~~~~~-~~~~~-----~a~aaid~AlwDl~gk~~g~Pv~~LLGg~~~~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~ 154 (354)
T cd03317 81 EVSERLAP-IKGNN-----MAKAGLEMAVWDLYAKAQGQSLAQYLGGTRDSIPVGVSIGIQDDVEQLLKQIERYLEEGYK 154 (354)
T ss_pred HHHHHHHH-hcCCh-----HHHHHHHHHHHHHHHHHcCCCHHHHhCCCCCeEEeeEEEeCCCcHHHHHHHHHHHHHcCCc
Confidence 99998876 34432 37999999999999999999999999998889999999887765 8889999999999999
Q ss_pred EEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 207 TLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 207 ~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
+||+|++. +.|+++|+++|++.+++.|++|+|++|+.++|. ++++|+++++ .|||||++++|++++++|++
T Consensus 155 ~~KiKv~~--~~d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a~-~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~---- 225 (354)
T cd03317 155 RIKLKIKP--GWDVEPLKAVRERFPDIPLMADANSAYTLADIP-LLKRLDEYGL--LMIEQPLAADDLIDHAELQK---- 225 (354)
T ss_pred EEEEecCh--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHH-HHHHhhcCCc--cEEECCCChhHHHHHHHHHh----
Confidence 99999974 689999999999866999999999999999985 8999999997 49999999999999999975
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++||++||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.||+++.++++|++ +++
T Consensus 226 ~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~l~~~a~~hla-~~~ 304 (354)
T cd03317 226 LLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESGIGRAHNVALA-SLP 304 (354)
T ss_pred hcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccchHHHHHHHHHH-hCC
Confidence 68899999999999999999999999999999999998 9999999999999999999999999999999999996 567
Q ss_pred CCcee-cccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 366 CFKFI-DLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 366 ~~~~~-e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+..+. +++... .+.+|++.++++++||++.+|++||||+++|++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~G~~~~p~~pGlG~~~d~~~l~ 353 (354)
T cd03317 305 NFTYPGDISASSRYFEEDIITPPFELENGIISVPTGPGIGVTVDREALK 353 (354)
T ss_pred CCCCccccCcchhhhhhccccCCeEeeCCEEECCCCCcCceecCHHHhc
Confidence 76553 444322 355788777899999999999999999999999874
No 4
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=8.2e-68 Score=525.89 Aligned_cols=343 Identities=22% Similarity=0.303 Sum_probs=296.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (412)
||++++++.+++|++.||..+..++..++.++|||+| +|++||||+. +.++....+ .+.+.|.|+|+|+.++
T Consensus 1 ~I~~i~~~~~~~pl~~p~~~~~~~~~~~~~v~V~v~~-~G~~G~Ge~~-----~~~~~~~~i--~~~~~p~liG~d~~~~ 72 (352)
T cd03328 1 AVERVEARAYTVPTDAPEADGTLAWDATTLVLVEVRA-GGRTGLGYTY-----ADAAAAALV--DGLLAPVVEGRDALDP 72 (352)
T ss_pred CeeEEEEEEEEccCCCcccCCccceeeeeEEEEEEEc-CCcEEEeCCC-----ChHHHHHHH--HHHHHHHhcCCCcccH
Confidence 7999999999999999997666656678899999997 7999999853 223322222 1357899999999999
Q ss_pred HHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHHHHc
Q 015161 127 GSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQ 203 (412)
Q Consensus 127 ~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~ 203 (412)
+.+|+.|++...++. ......|++||||||||++||.+|+|||+||||.++++|+|++.+. .+++++.+++++++++
T Consensus 73 ~~l~~~~~~~~~~~~~~g~~~~a~aaiD~AlwDl~gK~~g~Pv~~LLGg~~~~v~~y~s~~~~~~~~e~~~~~a~~~~~~ 152 (352)
T cd03328 73 PAAWEAMQRAVRNAGRPGVAAMAISAVDIALWDLKARLLGLPLARLLGRAHDSVPVYGSGGFTSYDDDRLREQLSGWVAQ 152 (352)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHC
Confidence 999999977432111 1112358999999999999999999999999998889999988653 3678899999999999
Q ss_pred CCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHH
Q 015161 204 GFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSH 282 (412)
Q Consensus 204 Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~ 282 (412)
||++||+|+|.++++|+++++++|++ ++++.|++|+|++|++++|++++++|+++++ .|+|||++++|+++|++|++
T Consensus 153 Gf~~~Kikvg~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~--~~~EeP~~~~d~~~~~~l~~ 230 (352)
T cd03328 153 GIPRVKMKIGRDPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGV--TWFEEPVSSDDLAGLRLVRE 230 (352)
T ss_pred CCCEEEeecCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCc--chhhCCCChhhHHHHHHHHh
Confidence 99999999998889999999999997 7899999999999999999999999999997 49999999999999999975
Q ss_pred Hhhcc--cCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHH
Q 015161 283 IAKDK--FGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 283 ~~~~~--~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~h 359 (412)
+ +++||++||++++..+++++++.+++|++|+|++|+| ++++++++++|+++|+++++|++ .++++|
T Consensus 231 ----~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~~------~~a~~h 300 (352)
T cd03328 231 ----RGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHCA------PALHAH 300 (352)
T ss_pred ----hCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCch------HHHHHH
Confidence 6 7799999999999999999999999999999999998 99999999999999999999974 358899
Q ss_pred HHccCCCCceecccCCc-ccccCCCCCceeeeCcEEeeCC-CCCcccccCCC
Q 015161 360 LSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTN-ARGHGGFLHWD 409 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~-~pGlG~~ld~~ 409 (412)
+++++||+.+.|+..+. .+.++++.++++++||++.+|+ +||||+++||.
T Consensus 301 l~aa~~n~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~PGLGv~~d~~ 352 (352)
T cd03328 301 VACAVPRLRHLEWFHDHVRIERMLFDGAPDPSGGALRPDLSRPGLGLELRAR 352 (352)
T ss_pred HHHhCCCCccceecccchhhhHHhccCCCcccCCEEeCCCCCCccceecCCC
Confidence 99999998888865432 2335666777889999999987 79999999983
No 5
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=8.9e-68 Score=526.82 Aligned_cols=347 Identities=20% Similarity=0.263 Sum_probs=302.7
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++++|+++||.++.++.+.++.++|||+|++|++||||+.. +++++...+...++.+.|.|+|++. +
T Consensus 1 ~~I~~v~~~~~~~pl~~~~~~~~~~~~~~~~v~V~v~t~~G~~G~Ge~~~---~~~~~~~~~~~~~~~l~p~LiG~~~-~ 76 (355)
T cd03321 1 VLITGLRARAVNVPMQYPVHTSVGTVATAPLVLIDLATDEGVTGHSYLFT---YTPAALKSLKQLLDDMAALLVGEPL-A 76 (355)
T ss_pred CeeEEEEEEEEEccCCCccccccceeccCcEEEEEEEECCCCeEEEeeec---CCCCcHHHHHHHHHHHHHHhCCCCC-C
Confidence 69999999999999999999999998889999999999999999999643 3455554444445668999999975 5
Q ss_pred HHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHc
Q 015161 126 LGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQ 203 (412)
Q Consensus 126 ~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 203 (412)
.+.+++.+.+.. .++.. ....|++||||||||++||.+|+|||+||||..+++|+|.+++..+++++.+++++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~-~~~~a~aaid~AlwDl~gk~~g~Pv~~LlGg~~~~v~~y~s~~~~~~~~~~~~a~~~~~~ 155 (355)
T cd03321 77 PAELERALAKRFRLLGYTG-LVRMAAAGIDMAAWDALAKVHGLPLAKLLGGNPRPVQAYDSHGLDGAKLATERAVTAAEE 155 (355)
T ss_pred hHHHHHHHHHHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCeeEEEeCCCChHHHHHHHHHHHHHh
Confidence 677776665532 12211 123589999999999999999999999999988899999998888889999999999999
Q ss_pred CCCEEeEecC-CChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 204 GFTTLKLKVG-KNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 204 Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
||++||+|+| .++++|+++++++|++ +|++.|++|+|++|++++|++++++|+++++ .|||||++++|+++|++|+
T Consensus 156 Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~ 233 (355)
T cd03321 156 GFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGL--TWIEEPTLQHDYEGHARIA 233 (355)
T ss_pred hhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCC--CEEECCCCCcCHHHHHHHH
Confidence 9999999998 4788999999999997 7899999999999999999999999999997 4999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. ..++|+
T Consensus 234 ~----~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h~~~------~~~~h~ 303 (355)
T cd03321 234 S----ALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSHLFQ------EISAHL 303 (355)
T ss_pred H----hcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeecccchH------HHHHHH
Confidence 5 68899999999999999999999999999999999998 999999999999999999999852 247899
Q ss_pred HccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 361 SAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 361 aaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
+++++++.++|+.. +..+++..+++++||++++|++||||+++|+++++
T Consensus 304 ~aa~~~~~~~e~~~---~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 352 (355)
T cd03321 304 LAVTPTAHWLEYVD---WAGAILEPPLKFEDGNAVIPDEPGNGIIWREKAVR 352 (355)
T ss_pred HHhCCCcceeeccc---hHHHHhcCCcEEECCEEECCCCCcCCcccCHHHHH
Confidence 99999988877421 22345567789999999999999999999998763
No 6
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.6e-66 Score=522.87 Aligned_cols=348 Identities=18% Similarity=0.230 Sum_probs=298.4
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCC-CC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPA-MA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~-~~ 125 (412)
||++|+++++.+|++.||+++.++...++.++|||+|++|++||||++.. .+... .+..++|.++|.++ .+
T Consensus 1 ~I~~i~~~~~~~p~~~p~~~~~~~~~~~~~~~Vrv~td~G~~G~Ge~~~~----~~~~~----~~~~~~~~llg~~~~~~ 72 (395)
T cd03323 1 KITEMRVTPVAGHDSPLLNLSGAHEPFFTRNIVELTDDNGNTGVGESPGG----AEALE----ALLEAARSLVGGDVFGA 72 (395)
T ss_pred CeEEEEEEEEeccCCccccccccCCCcceEEEEEEEECCCCeeccccCCC----HHHHH----HHHHHhHHHhCCCcchh
Confidence 69999999999999999999887767789999999999999999997531 12222 33567888888877 57
Q ss_pred HHHHHHHHHhhcC--CCc--c------hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec--------
Q 015161 126 LGSVFGVVAGLLP--GHQ--F------ASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-------- 186 (412)
Q Consensus 126 ~~~~~~~l~~~~~--g~~--~------~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-------- 186 (412)
.+.+|+.|++... ++. . .....|++||||||||++||.+|+|||+||||. ++++|+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~saiD~ALwDl~gK~~g~Pl~~LLGG~~r~~v~~ya~~~~~~~~~~~ 152 (395)
T cd03323 73 YLAVLESVRVAFADRDAGGRGLQTFDLRTTVHVVTAFEVALLDLLGQALGVPVADLLGGGQRDSVPFLAYLFYKGDRHKT 152 (395)
T ss_pred hHHHHHHHHHHHhcccccccCccccchhHHHHHHHHHHHHHHHHhhhhcCCCHHHHhCCCccCeEEEEEEeeeccccccc
Confidence 8889999876532 111 0 112468999999999999999999999999996 77999997642
Q ss_pred -------------CCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 015161 187 -------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 187 -------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
..+++++.++++++++ +||++||+|+|. ++++|+++|+++|++.|++.|++|+|++|++++|+++
T Consensus 153 ~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 153 DLPYPWFRDRWGEALTPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred cccccccccccccCCCHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 2477888888988875 699999999994 6789999999999987899999999999999999999
Q ss_pred HHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHH
Q 015161 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALE 330 (412)
Q Consensus 252 ~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~ 330 (412)
+++|++ ++. |||||++ |+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| +++++|
T Consensus 233 ~~~l~~-~l~--~iEeP~~--d~~~~~~L~~----~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELEG-VLA--YLEDPCG--GREGMAEFRR----ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcCc-CCC--EEECCCC--CHHHHHHHHH----hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 999999 874 9999998 8999999975 67899999999999999999999999999999999998 999999
Q ss_pred HHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCC
Q 015161 331 IIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWD 409 (412)
Q Consensus 331 i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~ 409 (412)
++++|+++|+++++|++.+++++.++++|++++++|+.+ +|...++...++++.++++++||++++|++||||+++|++
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~i~~aa~~hlaaa~~~~~~~~d~~~~~~~~~~~~~~~~~~~~G~~~vp~~PGLGv~~d~~ 383 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLGISLAMMTHVAAAAPGLITACDTHWIWQDGQVITGEPLRIKDGKVAVPDKPGLGVELDRD 383 (395)
T ss_pred HHHHHHHcCCeEEEecCcccHHHHHHHHHHHHhCCCcccccccchhhhccccccCCCceeeCCEEECCCCCcCCccCCHH
Confidence 999999999999999998999999999999999999775 3432232223345557788999999999999999999998
Q ss_pred CC
Q 015161 410 NI 411 (412)
Q Consensus 410 ~~ 411 (412)
.+
T Consensus 384 ~l 385 (395)
T cd03323 384 KL 385 (395)
T ss_pred HH
Confidence 76
No 7
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=100.00 E-value=1.3e-65 Score=518.78 Aligned_cols=340 Identities=18% Similarity=0.217 Sum_probs=290.0
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (412)
|||++|+++.+ .| .++.++|||+|++|++||||+... +++. .....+ +.++|.|+|+++.
T Consensus 1 mkI~~v~~~~~-----~~---------~~~~vlVri~td~G~~G~GE~~~~----~~~~-~~~~~~~~~l~p~l~G~d~~ 61 (404)
T PRK15072 1 MKIVDAEVIVT-----CP---------GRNFVTLKITTDDGVTGLGDATLN----GREL-AVASYLQDHVCPLLIGRDAH 61 (404)
T ss_pred CeeEEEEEEEE-----CC---------CCcEEEEEEEeCCCCeEEEecccC----CchH-HHHHHHHHHHHHHcCCCChh
Confidence 89999999754 11 135689999999999999998532 1221 122233 4589999999999
Q ss_pred CHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHH
Q 015161 125 ALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYR 201 (412)
Q Consensus 125 ~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~ 201 (412)
+++.+|+.|++.. .++.. ...|++||||||||++||.+|+|||+||||. ++++++|.+....+++++.+++++++
T Consensus 62 ~~e~~~~~l~~~~~~~~~~~--~~~a~aaID~AlwDl~gK~~g~Pl~~LLGG~~r~~v~~y~~~~~~~~~~~~~~a~~~~ 139 (404)
T PRK15072 62 RIEDIWQYLYRGAYWRRGPV--TMSAIAAVDMALWDIKAKAAGMPLYQLLGGASREGVMVYGHANGRDIDELLDDVARHL 139 (404)
T ss_pred HHHHHHHHHHHhcccCCchH--HHHHHHHHHHHHHHHhhhhcCCcHHHHcCCCccCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999997632 11211 2358999999999999999999999999996 67899987654557888889999999
Q ss_pred HcCCCEEeEecCC-C----------------------------------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCH
Q 015161 202 KQGFTTLKLKVGK-N----------------------------------LKEDIEVLRAIRAV-HPDSSFILDANEGYKP 245 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-~----------------------------------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~ 245 (412)
++||++||+|+|. . ++.|+++|+++|++ +|++.|++|+|++|++
T Consensus 140 ~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~G~~~~l~vDaN~~w~~ 219 (404)
T PRK15072 140 ELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKFGFDLHLLHDVHHRLTP 219 (404)
T ss_pred HcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhhCCCceEEEECCCCCCH
Confidence 9999999999972 1 13457899999997 7899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++|++++++|+++++. |||||++++|+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++|
T Consensus 220 ~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~~----~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GG 293 (404)
T PRK15072 220 IEAARLGKSLEPYRLF--WLEDPTPAENQEAFRLIRQ----HTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGG 293 (404)
T ss_pred HHHHHHHHhccccCCc--EEECCCCccCHHHHHHHHh----cCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCc
Confidence 9999999999999974 9999999999999999975 68899999999999999999999999999999999997
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHG 403 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG 403 (412)
++++++++++|+++|+++++|++. +|+++.++++|+++++||+.++|+..+..+.++++..++.++||++++|++||||
T Consensus 294 it~~~kia~lA~~~gi~~~~h~~~~~s~l~~aa~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~G~l~vpd~PGLG 373 (404)
T PRK15072 294 ITHLRRIADFAALYQVRTGSHGPTDLSPVCMAAALHFDLWVPNFGIQEYMGHSEETLEVFPHSYTFEDGYLHPGDAPGLG 373 (404)
T ss_pred HHHHHHHHHHHHHcCCceeeccCcccchHHHHHHHHHHHhccccceeeecccchhhHhhcCCCCeEECCEEECCCCCCCC
Confidence 999999999999999999999875 6999999999999999998888876543344677777889999999999999999
Q ss_pred cccCCCCCC
Q 015161 404 GFLHWDNIA 412 (412)
Q Consensus 404 ~~ld~~~~~ 412 (412)
+++|+++++
T Consensus 374 i~~d~~~l~ 382 (404)
T PRK15072 374 VDFDEKLAA 382 (404)
T ss_pred eeECHHHHh
Confidence 999998763
No 8
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=2.3e-65 Score=511.82 Aligned_cols=343 Identities=20% Similarity=0.261 Sum_probs=295.4
Q ss_pred EEeEEEEEEEEeccccceec----cCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTI----ATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~----a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
||++|+++.+++|+++|+.+ +.++...++.++|||+|++|++||||+.+. . . ......+.+.|.|+|++
T Consensus 1 ~I~~i~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~Vri~td~G~~G~G~~~~~--~---~--~~~~~~~~l~p~liG~d 73 (368)
T cd03329 1 KITDVEVTVFEYPTQPVSFDGGHHHPGPAGTRKLALLTIETDEGAKGHAFGGRP--V---T--DPALVDRFLKKVLIGQD 73 (368)
T ss_pred CeEEEEEEEEEeecCcccccccccCCCCCccceEEEEEEEECCCCeEEEecCCc--h---h--HHHHHHHHHHHhcCCCC
Confidence 69999999999999998766 577888899999999999999999996431 1 1 11112245899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC-------CCHHHHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI-------VSPAEAAE 195 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~-------~~~~~~~~ 195 (412)
+.+++.+|+.|.+.+.+.. ..|++||||||||++||.+|+|||+||||.++++|+|++++. .+++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~----~~A~said~AlwDl~gk~~g~Pl~~LLGg~~~~v~~y~s~~~~~~~~~~~~~~~~~~ 149 (368)
T cd03329 74 PLDRERLWQDLWRLQRGLT----DRGLGLVDIALWDLAGKYLGLPVHRLLGGYREKIPAYASTMVGDDLEGLESPEAYAD 149 (368)
T ss_pred hhHHHHHHHHHHHHhcCcc----hhHHHHHHHHHHHHhhhhcCCcHHHHhhccccceeEEEecCCCcccccCCCHHHHHH
Confidence 9999999999987655432 137999999999999999999999999998889999987633 37889999
Q ss_pred HHHHHHHcCCCEEeEecCCC--hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~--~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.+++++++||++||+|+|.+ ++.|+++++++|++ |+++.|++|+|++|+.++|++++++|+++++. |+|||++++
T Consensus 150 ~a~~~~~~Gf~~~Kik~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~--~iEeP~~~~ 227 (368)
T cd03329 150 FAEECKALGYRAIKLHPWGPGVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFF--WYEDPLREA 227 (368)
T ss_pred HHHHHHHcCCCEEEEecCCchhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCC--eEeCCCCch
Confidence 99999999999999998743 68899999999997 79999999999999999999999999999874 999999999
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
|++++++|++ ++++||++||++++ +.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++
T Consensus 228 d~~~~~~l~~----~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~~--- 300 (368)
T cd03329 228 SISSYRWLAE----KLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHGN--- 300 (368)
T ss_pred hHHHHHHHHh----cCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEECh---
Confidence 9999999874 68899999999999 999999999999999999999997 99999999999999999999985
Q ss_pred HHHHHHHHHHHccCCCCceecc--cCCcccccCC-----CCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 351 RLAMGFAGHLSAGLGCFKFIDL--DTPLLLSEDP-----VLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~~~~~e~--~~p~~~~~d~-----~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
.++++|++++++|+.+.|. +.|.....++ ..+++.++||++.+|++||||+++|++.++
T Consensus 301 ---~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGlGv~~d~~~l~ 366 (368)
T cd03329 301 ---GAANLHVIAAIRNTRYYERGLLHPSQKYDVYAGYLSVLDDPVDSDGFVHVPKGPGLGVEIDFDYIE 366 (368)
T ss_pred ---HHHHHHHHhcCCCceeEEEecccccccccccccchhccCCCcCCCCeEECCCCCcCCccCCHHHHh
Confidence 4688999999999988874 3333221111 123455689999999999999999999864
No 9
>PRK14017 galactonate dehydratase; Provisional
Probab=100.00 E-value=5.7e-65 Score=511.18 Aligned_cols=336 Identities=19% Similarity=0.245 Sum_probs=285.6
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMA 125 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~ 125 (412)
|||++|+++++. + ..++|||+|++|++||||+.... +.+. ....++.+.|.|+|+++.+
T Consensus 1 mkI~~i~~~~~~-----~-----------~~vlV~v~t~dG~~G~GE~~~~~--~~~~---~~~~~~~~~p~l~G~d~~~ 59 (382)
T PRK14017 1 MKITKLETFRVP-----P-----------RWLFLKIETDEGIVGWGEPVVEG--RART---VEAAVHELADYLIGKDPRR 59 (382)
T ss_pred CeEEEEEEEEEC-----C-----------CEEEEEEEECCCCeEEeccccCC--chHH---HHHHHHHHHHHhCCCCHHH
Confidence 799999998762 1 23889999999999999986421 2222 2223456899999999999
Q ss_pred HHHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 126 ~~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
++.+++.|+.. .++... ...|++||||||||++||.+|+|||+||||+ ++++|+|.+++..+++++.++++++++
T Consensus 60 ~~~~~~~l~~~~~~~~~~~--~~~A~aaid~AlwDl~gK~~g~Pv~~LLGg~~r~~i~~~~~~~~~~~~~~~~~a~~~~~ 137 (382)
T PRK14017 60 IEDHWQVMYRGGFYRGGPI--LMSAIAGIDQALWDIKGKALGVPVHELLGGLVRDRIRVYSWIGGDRPADVAEAARARVE 137 (382)
T ss_pred HHHHHHHHHHhcccCCchH--HhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeeEeEeCCCCCHHHHHHHHHHHHH
Confidence 99999998653 222211 1358999999999999999999999999996 679999988777789999999999999
Q ss_pred cCCCEEeEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 203 QGFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 203 ~Gf~~~KiKvG~---------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
+||++||+|+|. ++++|+++|+++|+. +|++.|++|+|++|+.++|++++++|+++++. |||||++++
T Consensus 138 ~Gf~~~KiKv~~~~~~~~~~~~~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~--~iEeP~~~~ 215 (382)
T PRK14017 138 RGFTAVKMNGTEELQYIDSPRKVDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPM--FIEEPVLPE 215 (382)
T ss_pred cCCCEEEEcCcCCccccccHHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCC--eEECCCCcC
Confidence 999999999963 357899999999997 78999999999999999999999999999974 999999999
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
|+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +
T Consensus 216 d~~~~~~L~~----~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~-~ 290 (382)
T PRK14017 216 NAEALPEIAA----QTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPLG-P 290 (382)
T ss_pred CHHHHHHHHh----cCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCCC-H
Confidence 9999999975 68899999999999999999999999999999999998 9999999999999999999999865 8
Q ss_pred HHHHHHHHHHccCCCCceeccc--CCccccc---CCCC--CceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 352 LAMGFAGHLSAGLGCFKFIDLD--TPLLLSE---DPVL--DGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 352 i~~~a~~hlaaa~~~~~~~e~~--~p~~~~~---d~~~--~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++++++|++++++++.+.|.. ..+...+ +.+. .+++++||++++|++||||+++|+|+|
T Consensus 291 i~~aa~~hl~aa~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~dG~~~vp~~PGLGv~~d~~~l 357 (382)
T PRK14017 291 IALAACLQVDAVSPNAFIQEQSLGIHYNQGADLLDYVKNKEVFAYEDGFVAIPTGPGLGIEIDEAKV 357 (382)
T ss_pred HHHHHHHHHHHhCccceeeeecccccccchhhHHHhcccCCCCcccCCeEECCCCCcCCcCCCHHHH
Confidence 9999999999999987665532 1111111 1222 467889999999999999999999876
No 10
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=100.00 E-value=5.1e-64 Score=500.79 Aligned_cols=343 Identities=26% Similarity=0.375 Sum_probs=301.9
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~ 125 (412)
||++|+++++++|++.| .++...++.++|||+|++|++||||+.+.+. .++ ....+++ +.|.|+|+++.+
T Consensus 1 kI~~i~~~~~~~p~~~~----~~~~~~~~~~~V~v~~~~G~~G~GE~~~~~~--~~~---~~~~l~~~~~p~l~G~~~~~ 71 (357)
T cd03316 1 KITDVETFVLRVPLPEP----GGAVTWRNLVLVRVTTDDGITGWGEAYPGGR--PSA---VAAAIEDLLAPLLIGRDPLD 71 (357)
T ss_pred CeeEEEEEEEecCCccc----ccccccceEEEEEEEeCCCCEEEEeccCCCC--chH---HHHHHHHHHHHHccCCChHH
Confidence 69999999999999998 5556678999999999999999999987542 222 2334454 899999999999
Q ss_pred HHHHHHHHHhhcCCCc-chhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCC--CHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLPGHQ-FASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIV--SPAEAAELASKYR 201 (412)
Q Consensus 126 ~~~~~~~l~~~~~g~~-~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~--~~~~~~~~~~~~~ 201 (412)
++.+++.|++...++. ......+++|||+||||++||.+|+|||+||||. ++++|+|.+++.. +++++.+.+++++
T Consensus 72 ~~~~~~~l~~~~~~~~~~~~~~~a~~aid~Al~Dl~gk~~g~pl~~llGg~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~ 151 (357)
T cd03316 72 IERLWEKLYRRLFWRGRGGVAMAAISAVDIALWDIKGKAAGVPVYKLLGGKVRDRVRVYASGGGYDDSPEELAEEAKRAV 151 (357)
T ss_pred HHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHhcccccCCcHhhccCCccCCceeeEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987543321 1112358999999999999999999999999998 7899999987665 6888999999999
Q ss_pred HcCCCEEeEecCCC------hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 202 KQGFTTLKLKVGKN------LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 202 ~~Gf~~~KiKvG~~------~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
++||+.||+|+|.+ ++.|+++|+++|++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|+
T Consensus 152 ~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~ 229 (357)
T cd03316 152 AEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDL 229 (357)
T ss_pred HcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCH
Confidence 99999999999964 68999999999997 7899999999999999999999999999987 499999999999
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHH
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLA 353 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~ 353 (412)
+++++|++ ++++||++||++++++++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++.+ +|+
T Consensus 230 ~~~~~l~~----~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~~~-~i~ 304 (357)
T cd03316 230 EGLARLRQ----ATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGAGG-PIG 304 (357)
T ss_pred HHHHHHHH----hCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCCCC-HHH
Confidence 99999975 67899999999999999999999999999999999998 9999999999999999999999966 999
Q ss_pred HHHHHHHHccCCCCceecccCCc-ccccCCCCCceeeeCcEEeeCCCCCcccc
Q 015161 354 MGFAGHLSAGLGCFKFIDLDTPL-LLSEDPVLDGYEVSGAVYKFTNARGHGGF 405 (412)
Q Consensus 354 ~~a~~hlaaa~~~~~~~e~~~p~-~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ 405 (412)
.++++|++++++++.++|++.+. .+..+++.+++.++||++.+|++||||++
T Consensus 305 ~aa~~hla~a~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~p~~pGlGv~ 357 (357)
T cd03316 305 LAASLHLAAALPNFGILEYHLDDLPLREDLFKNPPEIEDGYVTVPDRPGLGVE 357 (357)
T ss_pred HHHHHHHHHhCcChheEEeecccchhhHhhccCCCeeeCCEEECCCCCCCCCC
Confidence 99999999999999999987653 23445677788999999999999999985
No 11
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=8.1e-64 Score=501.05 Aligned_cols=339 Identities=20% Similarity=0.257 Sum_probs=284.6
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECC---C--cEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCC
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSN---G--CVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAM 124 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~---G--~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~ 124 (412)
++++.+++|+++||.++.+++..++.++|||+||+ | ++||||+.. ++.... ..+ +.+.|.|+|+||.
T Consensus 3 ~~~~~~~~Pl~~p~~~a~~~~~~~~~~lV~v~td~~~~G~~~~G~Ge~~~-----~~~~~~--~~i~~~~~p~LiG~dp~ 75 (385)
T cd03326 3 VAIREKAIPLSSPIANAYVDFSGLTTSLVAVVTDVVRDGRPVVGYGFDSI-----GRYAQG--GLLRERFIPRLLAAAPD 75 (385)
T ss_pred eeeEEEecCCCCCccCceeeeeccEEEEEEEEeccccCCCceeEEEeccC-----CchhHH--HHHHHHHHHHhcCCChH
Confidence 56778889999999999999999999999999999 9 999999862 112111 123 4488999999998
Q ss_pred ----------CHHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CCeeeeceeec
Q 015161 125 ----------ALGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIP 186 (412)
Q Consensus 125 ----------~~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~ 186 (412)
+++.+|+.|+... .++.. ...|+|||||||||++||.+|+|||+||||. ++++|+|.+.+
T Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~A~saID~ALwDl~gK~~g~Pv~~LLGG~~~~~~~~~~v~~y~~~~ 153 (385)
T cd03326 76 SLLDDAGGNLDPARAWAAMMRNEKPGGHGE--RAVAVGALDMAVWDAVAKIAGLPLYRLLARRYGRGQADPRVPVYAAGG 153 (385)
T ss_pred HhhhcccccCCHHHHHHHHHhcCccCCCCH--HHHHHHHHHHHHHHHhHHHcCCcHHHHcCCcccCCCCCCeEEEEEecC
Confidence 4499999996632 22221 2358999999999999999999999999985 36899998754
Q ss_pred ----CCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 187 ----IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 187 ----~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
..+++++.+++++++++||++||+|+|. +++.|+++|+++|++ +|++.|++|+|++|+.++|+++++.|+++++
T Consensus 154 ~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~ 233 (385)
T cd03326 154 YYYPGDDLGRLRDEMRRYLDRGYTVVKIKIGGAPLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGL 233 (385)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 3467888899999999999999999984 788999999999997 7999999999999999999999999999997
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCC----CEEEecCCCCc-HHHHHHHHHHH
Q 015161 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA----DVINIKLAKVG-VLGALEIIEVV 335 (412)
Q Consensus 261 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~----d~v~ik~~~~G-it~~l~i~~~A 335 (412)
. |||||++++|+++|++|++ ++++||++||+++++.+++++++.+++ |++|+|++|+| +|++++++++|
T Consensus 234 ~--~iEeP~~~~d~~~~~~L~~----~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA 307 (385)
T cd03326 234 R--WYEEPGDPLDYALQAELAD----HYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVL 307 (385)
T ss_pred C--EEECCCCccCHHHHHHHHh----hCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHH
Confidence 4 9999999999999999975 688999999999999999999999887 99999999997 99999999999
Q ss_pred HHcCCc---EEEccCcchHHHHHHHHHHHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 336 RASGLN---LMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 336 ~~~gi~---~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
+++|++ +++|+ +..+++|+++++++ .++|....+.-..+.+.++++++||++.+|++||||+|+|++.+
T Consensus 308 ~a~gi~~~~~~pH~------~~~a~lhl~aa~~~-~~~e~~~~~~~~~~~~~~~~~~~~G~i~~p~~PGlGield~~~~ 379 (385)
T cd03326 308 EAHGWSRRRFFPHG------GHLMSLHIAAGLGL-GGNESYPDVFQPFGGFADGCKVENGYVRLPDAPGIGFEGKAELA 379 (385)
T ss_pred HHcCCCCceeecch------HHHHHHHHHhcCCC-ceeEEeccccchhhhcCCCCceeCCEEECCCCCCCCcccCHHHH
Confidence 999998 77775 34688999999885 23332211110112334667889999999999999999999875
No 12
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=100.00 E-value=6.9e-64 Score=499.59 Aligned_cols=332 Identities=17% Similarity=0.194 Sum_probs=283.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~ 125 (412)
||++|+++.. . |. ++.++|||+|++|++||||+.+.. +.+. ....++ .+.|.|+|+++.+
T Consensus 1 kI~~ie~~~~-~----~~---------~~~vlV~v~td~G~~G~GE~~~~~--~~~~---~~~~i~~~l~p~l~G~d~~~ 61 (361)
T cd03322 1 KITAIEVIVT-C----PG---------RNFVTLKITTDQGVTGLGDATLNG--RELA---VKAYLREHLKPLLIGRDANR 61 (361)
T ss_pred CeEEEEEEEE-C----CC---------CCEEEEEEEeCCCCeEEEecccCC--CHHH---HHHHHHHHHHHHcCCCChhH
Confidence 7999999644 2 21 246899999999999999985321 1222 223344 4899999999999
Q ss_pred HHHHHHHHHhhc--CCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLL--PGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRK 202 (412)
Q Consensus 126 ~~~~~~~l~~~~--~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~ 202 (412)
++.+|+.|+... .++. ....|++||||||||++||.+|+|||+||||. ++++|+|.+.+..+++++.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~~~~--~~~~a~aaid~AlwDl~gk~~g~Pl~~LLGg~~r~~v~~ya~~~~~~~~~~~~~a~~~~~ 139 (361)
T cd03322 62 IEDIWQYLYRGAYWRRGP--VTMNAIAAVDMALWDIKGKAAGMPLYQLLGGKSRDGIMVYSHASGRDIPELLEAVERHLA 139 (361)
T ss_pred HHHHHHHHHHhcccCCch--HHHHHHHHHHHHHHHHhHhhcCCcHHHHcCCCccCeeeEEEeCCCCCHHHHHHHHHHHHH
Confidence 999999986632 2111 12358999999999999999999999999996 678999977666678888899999999
Q ss_pred cCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhH
Q 015161 203 QGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVS 281 (412)
Q Consensus 203 ~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~ 281 (412)
+||++||+|+ +++|+++|++ ++++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|+
T Consensus 140 ~Gf~~~KiKv-------~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~--~iEeP~~~~d~~~~~~L~ 210 (361)
T cd03322 140 QGYRAIRVQL-------PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLF--WMEDPTPAENQEAFRLIR 210 (361)
T ss_pred cCCCeEeeCH-------HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCC--EEECCCCcccHHHHHHHH
Confidence 9999999998 8899999997 78999999999999999999999999999984 999999999999999997
Q ss_pred HHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHH
Q 015161 282 HIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGH 359 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~h 359 (412)
+ ++++||++||+++++.+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +++++.++++|
T Consensus 211 ~----~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~~~s~i~~aa~~~ 286 (361)
T cd03322 211 Q----HTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPTDLSPVGMAAALH 286 (361)
T ss_pred h----cCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCCCcchHHHHHHHH
Confidence 5 67899999999999999999999999999999999998 999999999999999999999987 69999999999
Q ss_pred HHccCCCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCCC
Q 015161 360 LSAGLGCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNIA 412 (412)
Q Consensus 360 laaa~~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~~ 412 (412)
++++++++.+.|+........+++.+++.++||++++|++||||+++|+|+++
T Consensus 287 laa~~~~~~~~e~~~~~~~~~~~~~~~~~~~dG~i~~p~~PGlGi~~d~~~l~ 339 (361)
T cd03322 287 LDLWVPNFGIQEYMRHAEETLEVFPHSVRFEDGYLHPGEEPGLGVEIDEKAAA 339 (361)
T ss_pred HHhhcCcceEEEeccccchHHHhcCCCCeecCCeEeCCCCCccCceECHHHHh
Confidence 99999987766653221223466777889999999999999999999999763
No 13
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=1.7e-63 Score=495.43 Aligned_cols=331 Identities=20% Similarity=0.273 Sum_probs=282.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMAL 126 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~ 126 (412)
||++|+++.+. ++.++|||+|++|++||||+.+.. +.+.. ...++.+.|.++|+++.++
T Consensus 1 ~I~~i~~~~~~----------------~~~~~V~i~~~~G~~G~GE~~~~~--~~~~~---~~~~~~l~p~l~G~d~~~~ 59 (352)
T cd03325 1 KITKIETFVVP----------------PRWLFVKIETDEGVVGWGEPTVEG--KARTV---EAAVQELEDYLIGKDPMNI 59 (352)
T ss_pred CeEEEEEEEEC----------------CCEEEEEEEECCCCEEEeccccCC--cchHH---HHHHHHHHHHhCCCCHHHH
Confidence 68899987652 246899999999999999997521 22332 2234568999999999999
Q ss_pred HHHHHHHHhh--cCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHc
Q 015161 127 GSVFGVVAGL--LPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQ 203 (412)
Q Consensus 127 ~~~~~~l~~~--~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 203 (412)
+.+++.|... ..++.. ...+++||||||||++||.+|+|||+||||. ++++|+|.+++..+++++.+++++++++
T Consensus 60 ~~~~~~~~~~~~~~~~~~--~~~a~aaid~Al~Dl~gk~~g~pv~~LLGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 137 (352)
T cd03325 60 EHHWQVMYRGGFYRGGPV--LMSAISGIDQALWDIKGKVLGVPVHQLLGGQVRDRVRVYSWIGGDRPSDVAEAARARREA 137 (352)
T ss_pred HHHHHHHHHhcCcCCcch--hhhHHHHHHHHHHHHhhhhcCCcHHHHcCCCccceeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999998653 222211 1248999999999999999999999999995 6789999888777888888999999999
Q ss_pred CCCEEeEecCC---------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 204 GFTTLKLKVGK---------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 204 Gf~~~KiKvG~---------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
||++||+|+|. +++.|+++|+++|++ +|++.||+|+|++|++++|+++++.|+++++. |||||++.+|
T Consensus 138 Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~--~iEeP~~~~d 215 (352)
T cd03325 138 GFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLL--FIEEPVLPEN 215 (352)
T ss_pred CCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCc--EEECCCCccC
Confidence 99999999983 467899999999997 79999999999999999999999999999975 9999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
++++++|++ ++++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +|++
T Consensus 216 ~~~~~~L~~----~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~~-~s~i 290 (352)
T cd03325 216 VEALAEIAA----RTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHCP-LGPI 290 (352)
T ss_pred HHHHHHHHH----hCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccCC-CChH
Confidence 999999975 68899999999999999999999999999999999998 99999999999999999999997 8999
Q ss_pred HHHHHHHHHccCCCCceeccc--CCccccc----CCCC-CceeeeCcEEeeCCCCCcccccC
Q 015161 353 AMGFAGHLSAGLGCFKFIDLD--TPLLLSE----DPVL-DGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~~e~~--~p~~~~~----d~~~-~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
+.++++|++++++++.+.|+. .++...+ +++. .+++++||++.+|++||||+++|
T Consensus 291 ~~~a~~hlaa~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~G~l~vp~~pGLGi~~d 352 (352)
T cd03325 291 ALAASLHVDASTPNFLIQEQSLGIHYNEGDDLLDYLVDPEVFDMENGYVKLPTGPGLGIEID 352 (352)
T ss_pred HHHHHHHHHHhcccHHhhhcccccCcccchhhhhhhccCCCCeeeCCEEECCCCCccCeeeC
Confidence 999999999999987765532 2221111 1333 57889999999999999999987
No 14
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=100.00 E-value=7.1e-63 Score=488.91 Aligned_cols=321 Identities=19% Similarity=0.275 Sum_probs=273.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMA 125 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~ 125 (412)
||++|+.+. ..++|||+|++|++||||+.+. . .. ...+ +.+.|.|+|+++.+
T Consensus 1 kI~~i~~~~-------------------~~v~V~i~td~Gi~G~GE~~~~----~-~~---~~~i~~~l~p~liG~dp~~ 53 (341)
T cd03327 1 KIKSVRTRV-------------------GWLFVEIETDDGTVGYANTTGG----P-VA---CWIVDQHLARFLIGKDPSD 53 (341)
T ss_pred CeEEEEEEE-------------------EEEEEEEEECCCCeEEecCCCc----h-HH---HHHHHHHHHHHhCCCCchH
Confidence 688888753 2589999999999999998431 1 11 1223 45899999999999
Q ss_pred HHHHHHHHHhhcC--CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeec-CCCHHHHHHHHHHHH
Q 015161 126 LGSVFGVVAGLLP--GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIP-IVSPAEAAELASKYR 201 (412)
Q Consensus 126 ~~~~~~~l~~~~~--g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~-~~~~~~~~~~~~~~~ 201 (412)
++.+|+.|++... ++.. ....|++||||||||++||.+|+|||+||||. ++++|+|++.. ..+++++.+++++++
T Consensus 54 ~~~~~~~l~~~~~~~~~~~-~~~~a~said~AlwDl~gK~~g~Pv~~LLGG~~r~~i~~y~~~~~~~~~~~~~~~a~~~~ 132 (341)
T cd03327 54 IEKLWDQMYRATLAYGRKG-IAMAAISAVDLALWDLLGKIRGEPVYKLLGGRTRDKIPAYASGLYPTDLDELPDEAKEYL 132 (341)
T ss_pred HHHHHHHHHhhccccCCcc-HHHhHHHHHHHHHHHhcccccCCCHHHHcCCCcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999976421 2111 12358999999999999999999999999996 56899998753 458888899999999
Q ss_pred HcCCCEEeEecCC-------ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC
Q 015161 202 KQGFTTLKLKVGK-------NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD 273 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-------~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d 273 (412)
++||++||+|+|. +++.|+++++++|++ +|++.|++|+|++|++++|++++++|+++++. |||||++++|
T Consensus 133 ~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~--~iEeP~~~~d 210 (341)
T cd03327 133 KEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELR--WIEEPLIPDD 210 (341)
T ss_pred HcCCCEEEECCCCCCCcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCc--cccCCCCccC
Confidence 9999999999973 357899999999997 78999999999999999999999999999974 9999999999
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
+++|++|++ ++++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|+.
T Consensus 211 ~~~~~~l~~----~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~~----- 281 (341)
T cd03327 211 IEGYAELKK----ATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHAS----- 281 (341)
T ss_pred HHHHHHHHh----cCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccccH-----
Confidence 999999975 68999999999999999999999999999999999998 99999999999999999999973
Q ss_pred HHHHHHHHHccCCCCceecccCCc--c----cccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 353 AMGFAGHLSAGLGCFKFIDLDTPL--L----LSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 353 ~~~a~~hlaaa~~~~~~~e~~~p~--~----~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
.++++|++++++|+.+.|+..+. . +.++++.+++.++||++++|++||||+++|
T Consensus 282 -~~a~~hlaaa~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~PGLGve~d 341 (341)
T cd03327 282 -QIYNYHFIMSEPNSPFAEYLPNSPDEVGNPLFYYIFLNEPVPVNGYFDLSDKPGFGLELN 341 (341)
T ss_pred -HHHHHHHHHhCcCceeEEecccccccccchhHHHhccCCCcccCCeEECCCCCccCeecC
Confidence 45889999999998887754211 0 124566677888999999999999999987
No 15
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.5e-62 Score=493.94 Aligned_cols=345 Identities=20% Similarity=0.236 Sum_probs=277.5
Q ss_pred eEEeEEEEEEEEeccccceeccCc--eeeeeeEEEEEEEECC-CcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATS--RLDQVENVAIRIELSN-GCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~--~~~~~~~~lV~v~t~~-G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
+||++|+++.+++|++.|+..+.+ .....+.++|||+||+ |++||||+.+.. +........++.++|.++|++
T Consensus 1 ~kI~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~V~i~td~~G~~G~Ge~~~~~----~~~~~~~~~~~~lap~liG~d 76 (415)
T cd03324 1 IKITALEVRDVRFPTSLELDGSDAMNPDPDYSAAYVVLRTDAAGLKGHGLTFTIG----RGNEIVCAAIEALAHLVVGRD 76 (415)
T ss_pred CeEEEEEEEEEEeecCccCCCcccccCCCCceEEEEEEEecCCCCEEEEEeccCC----CchHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999855433 3334578999999999 999999986421 121212223356899999999
Q ss_pred CCCHHHHHHHHHhhcC--------CCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC------------------
Q 015161 123 AMALGSVFGVVAGLLP--------GHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS------------------ 176 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~--------g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~------------------ 176 (412)
+.+++.+++.+.+.+. +........|+|||||||||++||.+|+|||+||||..
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~saiD~AlwDl~gK~~g~Pv~~LLGg~~~~~~~~~~~~~~~~~~~~ 156 (415)
T cd03324 77 LESIVADMGKFWRRLTSDSQLRWIGPEKGVIHLATAAVVNAVWDLWAKAEGKPLWKLLVDMTPEELVSCIDFRYITDALT 156 (415)
T ss_pred HHHHHHHHHHHHHHhhccccceecCCcccHHHHHHHHHHHHHHHHhhhhcCCcHHHHhcCCCHHHhhhcccceeeccccC
Confidence 9988554444433221 11111123589999999999999999999999999932
Q ss_pred ------------------------Ceeeeceee-c--CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh
Q 015161 177 ------------------------NTITTDITI-P--IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV 229 (412)
Q Consensus 177 ------------------------~~i~~~~~i-~--~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~ 229 (412)
+++|+|.+. + ..+++++.+++++++++||++||+|+|.+++.|+++++++|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~d~~~v~avRe~ 236 (415)
T cd03324 157 PEEALEILRRGQPGKAAREADLLAEGYPAYTTSAGWLGYSDEKLRRLCKEALAQGFTHFKLKVGADLEDDIRRCRLAREV 236 (415)
T ss_pred HHHHHHHhhhcccchhhhhhhhhccCCceeecCCcccCCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 467777542 2 2477888999999999999999999998899999999999997
Q ss_pred -CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc---CCeEEeCCCCCCHHHHH
Q 015161 230 -HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF---GVSVAADESCRSLDDVK 305 (412)
Q Consensus 230 -~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~---~ipIa~dEs~~~~~~~~ 305 (412)
||++.|++|+|++|++++|++++++|+++++. |||||++++|+++|++|++ ++ ++||++||++++..+++
T Consensus 237 vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~--~iEEP~~~~d~~~~~~L~~----~~~~~~iPIa~gEs~~~~~~~~ 310 (415)
T cd03324 237 IGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPW--WIEEPTSPDDILGHAAIRK----ALAPLPIGVATGEHCQNRVVFK 310 (415)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHhhccCCC--EEECCCCCCcHHHHHHHHH----hcccCCCceecCCccCCHHHHH
Confidence 79999999999999999999999999999974 9999999999999999975 44 69999999999999999
Q ss_pred HHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc---------CCCCceecccCC
Q 015161 306 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG---------LGCFKFIDLDTP 375 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa---------~~~~~~~e~~~p 375 (412)
++++.+++|++|+|++++| ++++++++++|+++|+++++|+ ++++.++++|.++. .++. ++|+..
T Consensus 311 ~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~---s~~~~~a~~~~~~~~~~~~~~~~~~~~-~~e~~~- 385 (415)
T cd03324 311 QLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA---GGVGLCELVQHLSMIDYICVSGSKEGR-VIEYVD- 385 (415)
T ss_pred HHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC---CHHHHHHHHHHhhcccccccCCccccc-hhhhHH-
Confidence 9999999999999999998 9999999999999999999996 56666666654332 1221 333211
Q ss_pred cccccCCCCCceeeeCcEEeeCCCCCcccccC
Q 015161 376 LLLSEDPVLDGYEVSGAVYKFTNARGHGGFLH 407 (412)
Q Consensus 376 ~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld 407 (412)
...+++.++++++||++.+|++||||+++.
T Consensus 386 --~~~~~~~~~~~~~dG~l~lp~~PGLGve~~ 415 (415)
T cd03324 386 --HLHEHFVYPVVIQNGAYMPPTDPGYSIEMK 415 (415)
T ss_pred --HHHhhccCCCeeeCCEEECCCCCccCeeeC
Confidence 123455677899999999999999999873
No 16
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=100.00 E-value=4.4e-62 Score=489.08 Aligned_cols=351 Identities=28% Similarity=0.402 Sum_probs=296.5
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCcc-CcccHHHHHHHHHHHhHHHcCCCCC
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHV-TAEDQQTAMVKASEACEVLKESPAM 124 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~-~~e~~~~~~~~~~~~~~~l~g~~~~ 124 (412)
|+|.+|+.+++.+|+..||.++.++.+.+..++|+++|++|++||||+.+.... +.+. ... ..+.+.++|.++.
T Consensus 1 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~v~i~~d~G~~G~GE~~~~~~~~~~~~---~~~--~~~~~~l~g~d~~ 75 (372)
T COG4948 1 MKIMKITVIPVAVPLSPPFVTSGGTVRFFTRVIVEITTDDGIVGWGEAVPGGRARYGEE---AEA--VLLAPLLIGRDPF 75 (372)
T ss_pred CCceeEEEEEeeeecCCcccccccccccceEEEEEEEECCCceeeccccCcccccchhh---hhH--HHHHHHhcCCCHH
Confidence 578899999999999999999998888899999999999999999999975322 1111 111 1478899999999
Q ss_pred CHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-CeeeeceeecC-C-CHHHHHHHHHHHH
Q 015161 125 ALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITIPI-V-SPAEAAELASKYR 201 (412)
Q Consensus 125 ~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i~~-~-~~~~~~~~~~~~~ 201 (412)
+++.+|+.++............+|++|||+||||+.||.+|+|||+||||.. +++++|.+... . +++...+.++.+.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~~~~a~sAvd~ALwDl~gK~~g~Pv~~LLGg~~r~~v~~y~~~~~~~~~~e~~~~~~~~~~ 155 (372)
T COG4948 76 DIERIWQKLYRAGFARRGGITMAAISAVDIALWDLAGKALGVPVYKLLGGKVRDEVRAYASGGGGEDPEEMAAEAARALV 155 (372)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhHcCCcHHHHcCCceeeeEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999987753322222234699999999999999999999999999986 48888887765 2 4555666667777
Q ss_pred HcCCCEEeEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHH
Q 015161 202 KQGFTTLKLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGH 279 (412)
Q Consensus 202 ~~Gf~~~KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~ 279 (412)
++||+.+|+|+|. +.+.|+++|+++|++ ++++.|++|+|++|+.++|++++++|+++++ .|||||++++|++++++
T Consensus 156 ~~G~~~~Klk~g~~~~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~ 233 (372)
T COG4948 156 ELGFKALKLKVGVGDGDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGL--EWIEEPLPPDDLEGLRE 233 (372)
T ss_pred hcCCceEEecCCCCchHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCc--ceEECCCCccCHHHHHH
Confidence 7999999999994 456999999999998 5699999999999999999999999999996 59999999999999999
Q ss_pred hHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHH
Q 015161 280 VSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAG 358 (412)
Q Consensus 280 l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~ 358 (412)
|++ .+.+|||+||++++..+++++++.+++|++|+|++++| ++++++++++|+.+++.+.+|. +++++.++++
T Consensus 234 l~~----~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~d~~~~GGite~~kia~~A~~~~~~v~~h~--~~~i~~aa~~ 307 (372)
T COG4948 234 LRA----ATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDLARVGGITEALKIAALAEGFGVMVGPHV--EGPISLAAAL 307 (372)
T ss_pred HHh----cCCCCEecCcccccHHHHHHHHHcCCCCeecCCccccCCHHHHHHHHHHHHHhCCceeccC--chHHHHHHHH
Confidence 985 55699999999999999999999999999999999998 9999999999998888777766 5999999999
Q ss_pred HHHccCCCCceecccCCcccc-----cCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 359 HLSAGLGCFKFIDLDTPLLLS-----EDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 359 hlaaa~~~~~~~e~~~p~~~~-----~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
|++++.+++. +++.++.+. ++++.++...++|++.+|++||||+++|++.+
T Consensus 308 hla~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~PGlGv~~~~~~~ 363 (372)
T COG4948 308 HLAAALPNFG--DLEGPLALADDDWYDDLVEEPLIVRGGLVHVPDGPGLGVELDEDAL 363 (372)
T ss_pred HHhhccchhh--hccccccccccchhhhhccCCccccCCeEeCCCCCCCCccccHHHH
Confidence 9999886544 444444332 23577777889999999999999999998864
No 17
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=100.00 E-value=1.5e-61 Score=491.02 Aligned_cols=347 Identities=18% Similarity=0.240 Sum_probs=284.2
Q ss_pred eEEeEEEEEEEEeccccce---eccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCC
Q 015161 46 VDVQRAENRPLNVPLIAPF---TIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESP 122 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf---~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~ 122 (412)
.-|+++++.++...- .|+ ..+++. ..+.++|+|+|++|++||||+.+ +++.. ..++.++|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~iV~v~Td~Gi~G~GEa~~-----~~~~~---~~l~~lap~LiG~d 72 (441)
T TIGR03247 4 PVVTEMRVIPVAGHD-SMLLNLSGAHAP--FFTRNIVILTDSSGNTGVGEVPG-----GEKIR---ATLEDARPLVVGKP 72 (441)
T ss_pred CEEeEEEEEeecccc-chhccccccCCC--cceEEEEEEEECCCCeEEEeCCC-----cHHHH---HHHHHHHHHhcCCC
Confidence 356777777764321 122 223333 57889999999999999999853 23322 23356899999999
Q ss_pred CCCHHHHHHHHHhhcC-------CCcc---hhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC-CC-CCeeeecee---ec-
Q 015161 123 AMALGSVFGVVAGLLP-------GHQF---ASQLKVRAAVEMALIDAVAKSVSMPLWRLFG-GV-SNTITTDIT---IP- 186 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~-------g~~~---~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG-g~-~~~i~~~~~---i~- 186 (412)
+.+++.+|+.|.+... ++.. .....|+|||||||||++||.+|+|||+||| |. +++||+|.+ ++
T Consensus 73 p~~~e~i~~~m~~~~~~~~~~~~g~~~~~~~~~~~A~aAIDiALWDl~gK~~g~Pl~~LLGgg~~r~~vp~y~~~~~ig~ 152 (441)
T TIGR03247 73 LGEYQNVLNDVRATFADRDAGGRGLQTFDLRTTIHAVTAIESALLDLLGQHLGVPVAALLGEGQQRDEVEMLGYLFFIGD 152 (441)
T ss_pred HHHHHHHHHHHHHHhhcccccccCcccccchhHHHHHHHHHHHHHHHhhhHcCCCHHHHhCCCCccceEEEeeeeeeccc
Confidence 9999999999976431 1110 0123589999999999999999999999999 64 578998753 11
Q ss_pred -------------------------CCCHHHHHHHHHHHHH-cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC
Q 015161 187 -------------------------IVSPAEAAELASKYRK-QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA 239 (412)
Q Consensus 187 -------------------------~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa 239 (412)
..+++++.++++++.+ +||++||+|+|. +.++|+++|+++|++++++.|++|+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~~Gf~a~KiKvG~~~~~~Di~~v~avRea~~d~~L~vDA 232 (441)
T TIGR03247 153 RKRTSLPYRSGPQDDDDWFRLRHEEALTPEAVVRLAEAAYDRYGFRDFKLKGGVLRGEEEIEAVTALAKRFPQARITLDP 232 (441)
T ss_pred cccccccccccccccccccccccccCCCHHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHHHHHHhCCCCeEEEEC
Confidence 1367888888888776 599999999995 5689999999999988899999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
|++|+.++|++++++|+++ + .|||||++++| ++++++|++ ++++||++||+++++.+++++++.+++|+
T Consensus 233 N~~wt~~~Ai~~~~~Le~~-~--~~iEePv~~~d~~~~~~~la~Lr~----~~~iPIa~dEs~~~~~~~~~li~~~avdi 305 (441)
T TIGR03247 233 NGAWSLDEAIALCKDLKGV-L--AYAEDPCGAEQGYSGREVMAEFRR----ATGLPTATNMIATDWRQMGHALQLQAVDI 305 (441)
T ss_pred CCCCCHHHHHHHHHHhhhh-h--ceEeCCCCcccccchHHHHHHHHH----hCCCCEEcCCccCCHHHHHHHHHhCCCCE
Confidence 9999999999999999998 7 49999999998 899999974 68999999999999999999999999999
Q ss_pred EEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccCCcccc--cCCCCCceeeeCcE
Q 015161 316 INIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDTPLLLS--EDPVLDGYEVSGAV 393 (412)
Q Consensus 316 v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~p~~~~--~d~~~~~~~~~~G~ 393 (412)
+|+|+.++|++++++++++|+++|+++++|++.+++++.++++|++++++++. .+++.++.+. ++++.++++++||+
T Consensus 306 ~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~~~~i~~aa~~hlaaa~p~~~-~~~d~~~~~~~~~~l~~~p~~~~dG~ 384 (441)
T TIGR03247 306 PLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNNHFDISLAMFTHVAAAAPGKI-TAIDTHWIWQDGQRLTKEPLEIKGGK 384 (441)
T ss_pred EeccCCcchHHHHHHHHHHHHHcCCEEEEeCCccCHHHHHHHHHHHHhCCCCc-cccCcchhhhcccccccCCceeECCE
Confidence 99999766799999999999999999999998888999999999999988632 3444443322 35667778899999
Q ss_pred EeeCCCCCcccccCCCCC
Q 015161 394 YKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 394 ~~~p~~pGlG~~ld~~~~ 411 (412)
+.+|++||||+++|++.+
T Consensus 385 i~vp~~PGLGve~d~~~l 402 (441)
T TIGR03247 385 IQVPDKPGLGVEIDMDAV 402 (441)
T ss_pred EecCCCCCCCceeCHHHH
Confidence 999999999999999876
No 18
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=100.00 E-value=2.1e-60 Score=467.90 Aligned_cols=317 Identities=23% Similarity=0.316 Sum_probs=278.2
Q ss_pred EEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccC--CccCcccHHHHHHHHHH-HhHHHcCCCCCCHHHHH
Q 015161 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVL--PHVTAEDQQTAMVKASE-ACEVLKESPAMALGSVF 130 (412)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~--~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~~~~ 130 (412)
+++++|++.||.++.+++++++.++|||+|++|++||||+.+. +.+++++...+...+++ +.|.++| ++.+++.++
T Consensus 1 ~~~~lp~~~p~~~a~~~~~~~~~~lV~v~~~~G~~G~GE~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~g-~~~~~~~~~ 79 (324)
T TIGR01928 1 YHVSEPFKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGEVVAFQTPWYTHETIATVKHIIEDFFEPNINK-EFEHPSEAL 79 (324)
T ss_pred CeecccCcCCEEcCCeeEecCcEEEEEEEECCCCeEEEeccccCCCCcCcccHHHHHHHHHHHHHHHhcC-CCCCHHHHH
Confidence 4678999999999999999999999999999999999999853 55677776655555554 6889999 999999999
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
+.+.. +.++. .+++||||||||++||..|+|+|+||||.++++|+|.+++..+++++.+++++++++||+.||+
T Consensus 80 ~~~~~-~~~~~-----~a~said~AlwDl~gk~~g~Pl~~llGg~~~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~Ki 153 (324)
T TIGR01928 80 ELVRS-LKGTP-----MAKAGLEMALWDMYHKLPSFSLAYGQGKLRDKAPAGAVSGLANDEQMLKQIESLKATGYKRIKL 153 (324)
T ss_pred HHHHH-ccCCc-----HHHHHHHHHHHHHHHhhhCCcHHHHhCCCCCeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 98865 33332 3799999999999999999999999999888999999988889999999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC
Q 015161 211 KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 211 KvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
|++. +.|+++++++|+++|++.|++|+|++|+.+++ +++++|+++++ .|||||++++|++++++|++ ++++
T Consensus 154 Kv~~--~~d~~~v~~vr~~~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~~--~~iEeP~~~~~~~~~~~l~~----~~~~ 224 (324)
T TIGR01928 154 KITP--QIMHQLVKLRRLRFPQIPLVIDANESYDLQDF-PRLKELDRYQL--LYIEEPFKIDDLSMLDELAK----GTIT 224 (324)
T ss_pred EeCC--chhHHHHHHHHHhCCCCcEEEECCCCCCHHHH-HHHHHHhhCCC--cEEECCCChhHHHHHHHHHh----hcCC
Confidence 9964 67999999999988899999999999999986 67899999997 49999999999999999975 6889
Q ss_pred eEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCce
Q 015161 291 SVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKF 369 (412)
Q Consensus 291 pIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~ 369 (412)
||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+|+.++++|+|+..++...
T Consensus 225 pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~~~~~~~ 304 (324)
T TIGR01928 225 PICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGISRAFNVALASLGGNDYP 304 (324)
T ss_pred CEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccHHHHHHHHHHhCCCCCCC
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999887765433
Q ss_pred eccc-CCcccccCCCCCc
Q 015161 370 IDLD-TPLLLSEDPVLDG 386 (412)
Q Consensus 370 ~e~~-~p~~~~~d~~~~~ 386 (412)
.|.. +...+..|++.++
T Consensus 305 ~~~~~~~~~~~~d~~~~~ 322 (324)
T TIGR01928 305 GDVSPSGYYFDQDIVAPS 322 (324)
T ss_pred CCCCCccccccccccCCC
Confidence 3443 3233455555544
No 19
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=100.00 E-value=1.2e-59 Score=471.57 Aligned_cols=312 Identities=17% Similarity=0.231 Sum_probs=256.5
Q ss_pred eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHH-HHHhHHHcCCCCCCHHHHHHHHHhhc--CCCcchhhhHH
Q 015161 72 DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKA-SEACEVLKESPAMALGSVFGVVAGLL--PGHQFASQLKV 148 (412)
Q Consensus 72 ~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~l~~~~--~g~~~~~~~~a 148 (412)
+.++.++|||+|++|++||||+... +.. . ..+ +.+.|.|+|+++.+++.+|+.|++.. .++.. ....|
T Consensus 54 ~~~~~vlVrI~td~G~~G~Ge~~~~-----~~~--~-~~v~~~l~p~LiG~dp~~~e~l~~~m~~~~~~~g~~g-~~~~A 124 (394)
T PRK15440 54 NVLGTLVVEVEAENGQVGFAVSTAG-----EMG--A-FIVEKHLNRFIEGKCVSDIELIWDQMLNATLYYGRKG-LVMNT 124 (394)
T ss_pred eccceEEEEEEECCCCEEEEeCCCc-----HHH--H-HHHHHHHHHHcCCCChhhHHHHHHHHHhhccccCCcc-HhhhH
Confidence 4567899999999999999996431 221 1 223 45899999999999999999997642 22221 12358
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC--C-----ChhHHH
Q 015161 149 RAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG--K-----NLKEDI 220 (412)
Q Consensus 149 ~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG--~-----~~~~D~ 220 (412)
+||||+||||++||.+|+|||+||||. ++++|+|.+.. .++ . .+++||+++|+|++ + ++++|+
T Consensus 125 ~saIDiALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~--~~~----~---a~~~Gf~~~Kik~~~g~~~g~~~~~~di 195 (394)
T PRK15440 125 ISCVDLALWDLLGKVRGLPVYKLLGGAVRDELQFYATGA--RPD----L---AKEMGFIGGKMPLHHGPADGDAGLRKNA 195 (394)
T ss_pred HHHHHHHHHHHhhhHcCCcHHHHcCCCCCCeeEEEecCC--ChH----H---HHhCCCCEEEEcCCcCcccchHHHHHHH
Confidence 999999999999999999999999996 67999986532 222 1 23689999999984 2 458999
Q ss_pred HHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC
Q 015161 221 EVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR 299 (412)
Q Consensus 221 ~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~ 299 (412)
++|+++|++ |+++.||+|+|++|++++|++++++|+++++. |||||++++|+++|++|++. ..+++||+.||+++
T Consensus 196 ~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~--wiEEPl~~~d~~~~~~L~~~--~~~~i~ia~gE~~~ 271 (394)
T PRK15440 196 AMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLK--WIEECLPPDDYWGYRELKRN--APAGMMVTSGEHEA 271 (394)
T ss_pred HHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCc--ceeCCCCcccHHHHHHHHHh--CCCCCceecCCCcc
Confidence 999999997 89999999999999999999999999999985 99999999999999999862 12348999999999
Q ss_pred CHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceecccC--Cc
Q 015161 300 SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLDT--PL 376 (412)
Q Consensus 300 ~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~~--p~ 376 (412)
+.++++++++.+++|++|+|++++| +|+++|++++|+++|+++++|+. .++++|++++++|+.++|+.. |.
T Consensus 272 ~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH~~------~~~~~hl~aa~~n~~~~E~~~~~~~ 345 (394)
T PRK15440 272 TLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPHGS------SVYSHHFVITRTNSPFSEFLMMSPD 345 (394)
T ss_pred CHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeecccCH------HHHHHHHHhhCcCceeEEecccCcc
Confidence 9999999999999999999999997 99999999999999999999962 357899999999998888621 11
Q ss_pred -----ccccCCCCCceeeeCcEEeeC--CCCCcccccCCCCC
Q 015161 377 -----LLSEDPVLDGYEVSGAVYKFT--NARGHGGFLHWDNI 411 (412)
Q Consensus 377 -----~~~~d~~~~~~~~~~G~~~~p--~~pGlG~~ld~~~~ 411 (412)
...++.+.+.+.++||++.+| ++||||+++|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~vp~~~~PGlGveld~~~~ 387 (394)
T PRK15440 346 ADTVVPQFDPILLDEPVPVNGRIHKSVLDKPGFGVELNRDCN 387 (394)
T ss_pred ccccccchhhhhcCCCeeeCCEEECCCCCCCccCcccCHHHH
Confidence 111122223367789999999 99999999999864
No 20
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=100.00 E-value=1.1e-58 Score=455.15 Aligned_cols=316 Identities=29% Similarity=0.400 Sum_probs=275.9
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+|+++++++|++.||.++.++.+.++.++|||+ ++|++||||+.|.+.+ +|+.+.+...+..+.|.++ . ..+.+.+
T Consensus 3 ~i~~~~~~lpl~~p~~~a~g~~~~~~~~lv~l~-~~G~~G~GE~~p~~~~-~~~~~~~~~~l~~~~~~l~-~-~~~~~~~ 78 (321)
T PRK15129 3 TVKVYEEAWPLHTPFVIARGSRSEARVVVVELE-EEGIKGTGECTPYPRY-GESDASVMAQIMSVVPQLE-K-GLTREAL 78 (321)
T ss_pred eEEEEEEEeeccCCEEccCceEEeeeEEEEEEE-eCCeEEEEeeCCcCCC-CCCHHHHHHHHHHHHHHHh-C-CCCHHHH
Confidence 799999999999999999999999999999998 6899999999987766 4777766666667888886 2 1122222
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
. ..+ ++. .+++||||||||++||..|+|+|+||||. ++++|+|++++..+++++.+++++++++||++|
T Consensus 79 ~----~~~-~~~-----~a~~aid~AlwDl~gk~~~~pl~~llGg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 148 (321)
T PRK15129 79 Q----KLL-PAG-----AARNAVDCALWDLAARQQQQSLAQLIGITLPETVTTAQTVVIGTPEQMANSASALWQAGAKLL 148 (321)
T ss_pred H----hhc-cCh-----HHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCceeEEEEecCCCHHHHHHHHHHHHHcCCCEE
Confidence 2 212 222 37999999999999999999999999996 568999999988899999999999999999999
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|+|. +.|+++++++|++.+++.|++|+|++|+.++|+++++.++++++ .|||||++++|+++++++ .+
T Consensus 149 KlKv~~--~~d~~~v~avr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i--~~iEqP~~~~~~~~l~~~------~~ 218 (321)
T PRK15129 149 KVKLDN--HLISERMVAIRSAVPDATLIVDANESWRAEGLAARCQLLADLGV--AMLEQPLPAQDDAALENF------IH 218 (321)
T ss_pred EEeCCC--chHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCc--eEEECCCCCCcHHHHHHh------cc
Confidence 999975 46899999999987899999999999999999999999999987 499999999999888765 35
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++|||++++.++.++. +++|++|+|++++| ++++++++++|+++|+++++|||+||+++.++++|+ .|++
T Consensus 219 ~~pia~dEs~~~~~d~~~~~--~~~d~v~~k~~~~GGi~~a~~i~~~a~~~gi~~~~g~~~es~i~~~a~~~l---~~~~ 293 (321)
T PRK15129 219 PLPICADESCHTRSSLKALK--GRYEMVNIKLDKTGGLTEALALATEARAQGFALMLGCMLCTSRAISAALPL---VPQV 293 (321)
T ss_pred CCCEecCCCCCCHHHHHHHH--hhCCEEEeCchhhCCHHHHHHHHHHHHHcCCcEEEecchHHHHHHHHHHHH---hcCC
Confidence 79999999999999999984 78999999999998 999999999999999999999999999999999999 4677
Q ss_pred ceecccCCcccccCCCCCceeeeCcEEe
Q 015161 368 KFIDLDTPLLLSEDPVLDGYEVSGAVYK 395 (412)
Q Consensus 368 ~~~e~~~p~~~~~d~~~~~~~~~~G~~~ 395 (412)
.+.|+++++.+.+|+ .+++.+++|+++
T Consensus 294 ~~~dl~~~~~~~~d~-~~~~~~~~G~~~ 320 (321)
T PRK15129 294 RFADLDGPTWLAVDV-EPALQFTTGELH 320 (321)
T ss_pred cEecCCCchhhcccC-CCCeEEeCCEEe
Confidence 788999888777787 456889999875
No 21
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=2.8e-58 Score=452.07 Aligned_cols=311 Identities=42% Similarity=0.658 Sum_probs=280.1
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
.|+++++++|++.|+.++.++...++.++|||+|+ |++||||+.+.+++++++...+...++.+.|.++|+++. ++.+
T Consensus 1 ~i~~~~~~~p~~~p~~~~~~~~~~~~~~~v~v~t~-G~~G~GE~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~-~~~~ 78 (316)
T cd03319 1 KISLRPERLPLKRPFTIARGSRTEAENVIVEIELD-GITGYGEAAPTPRVTGETVESVLAALKSVRPALIGGDPR-LEKL 78 (316)
T ss_pred CeEEEEEEeeccccEEeeCceEEeeeEEEEEEEEC-CEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCCch-HHHH
Confidence 37889999999999999999999999999999999 999999999877666676665555566679999999999 9999
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh-CCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF-GGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL-Gg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
++.+.....++. .+++||||||||++||..|+|+|+|| |+.+.++|+|++++..+++++.+.+++++++||+.|
T Consensus 79 ~~~l~~~~~~~~-----~a~~aid~AlwDl~gk~~g~pv~~ll~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~i 153 (316)
T cd03319 79 LEALQELLPGNG-----AARAAVDIALWDLEAKLLGLPLYQLWGGGAPRPLETDYTISIDTPEAMAAAAKKAAKRGFPLL 153 (316)
T ss_pred HHHHHHhccCCh-----HHHHHHHHHHHHHHHHHcCCcHHHHcCCCCCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEE
Confidence 999977544322 37899999999999999999999995 555678999988888889999999999999999999
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|+|.+++.|+++|+++|++.+++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ++
T Consensus 154 Kik~g~~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~----~~ 227 (316)
T cd03319 154 KIKLGGDLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRD----KS 227 (316)
T ss_pred EEEeCCChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHh----cC
Confidence 9999988899999999999974499999999999999999999999999987 49999999999999999975 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++++..+++++++.+++|++|+|++++| ++++++++++|+++|+++++|++++++|+.++++|+++++ .
T Consensus 228 ~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~i~~~a~~hl~a~~--~ 305 (316)
T cd03319 228 PLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESSLSIAAAAHLAAAK--A 305 (316)
T ss_pred CCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHHHHhhc--C
Confidence 899999999999999999999999999999999997 9999999999999999999999999999999999999987 4
Q ss_pred ceecccCC
Q 015161 368 KFIDLDTP 375 (412)
Q Consensus 368 ~~~e~~~p 375 (412)
.+.|++.+
T Consensus 306 ~~~~~~~~ 313 (316)
T cd03319 306 DFVDLDGP 313 (316)
T ss_pred cEEeccCc
Confidence 55555543
No 22
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=100.00 E-value=1.3e-55 Score=422.82 Aligned_cols=256 Identities=35% Similarity=0.565 Sum_probs=243.3
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (412)
|+++++++|++.||.++.++.+.++.++|+|+|++|.+||||+.
T Consensus 1 i~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~------------------------------------ 44 (265)
T cd03315 1 VEAIPVRLPLKRPLKWASGTLTTADHVLLRLHTDDGLVGWAEAT------------------------------------ 44 (265)
T ss_pred CEEEEEeecccCceEecceeEeccceEEEEEEECCCCEEEeccH------------------------------------
Confidence 57889999999999999999999999999999999999999974
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
++|||+||||++||.+|+|+|+|+|+.++++|+|++++..+++++.+++++++++||++||+
T Consensus 45 ------------------~~aid~Al~Dl~gk~~g~pv~~llG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Ki 106 (265)
T cd03315 45 ------------------KAAVDMALWDLWGKRLGVPVYLLLGGYRDRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKL 106 (265)
T ss_pred ------------------HHHHHHHHHHHHHHHcCCcHHHHcCCCCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 37999999999999999999999999888999999988888899999999999999999999
Q ss_pred ecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC
Q 015161 211 KVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289 (412)
Q Consensus 211 KvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 289 (412)
|+|.++++|++++++||++ ++++.|++|+|++|+.++|+++++.|+++++ .|||||++.+|++++++|++ .++
T Consensus 107 Kvg~~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~l~~----~~~ 180 (265)
T cd03315 107 KVGRDPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGL--DYVEQPLPADDLEGRAALAR----ATD 180 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCcccHHHHHHHHh----hCC
Confidence 9998889999999999997 6799999999999999999999999999987 49999999999999999975 678
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCC
Q 015161 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 290 ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~ 366 (412)
+||++||++.++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||+++|+++.++++|+|++++.
T Consensus 181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~ 258 (265)
T cd03315 181 TPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGLGTLANAHLAAALRA 258 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999998 999999999999999999999999999999999999998874
No 23
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=100.00 E-value=1.1e-52 Score=409.65 Aligned_cols=289 Identities=24% Similarity=0.296 Sum_probs=249.3
Q ss_pred EEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHHHH
Q 015161 54 RPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFGVV 133 (412)
Q Consensus 54 ~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~l 133 (412)
+++++|++.||+++.++.+.++.++|||+ ++|++||||+.|.+.|++|+...+...++.+.|.++++++.++.
T Consensus 1 ~~~~lpl~~p~~~a~g~~~~~~~~iv~l~-~~G~~G~GE~~p~~~~~~et~~~~~~~l~~l~~~l~~~~~~~~~------ 73 (307)
T TIGR01927 1 YRYQMPFDAPVVTRHGLLARREGLIVRLT-DEGRTGWGEIAPLPGFGTETLAEALDFCRALIEEITRGDIEAID------ 73 (307)
T ss_pred CcEeccCCCCcCcCceeEEeeeEEEEEEE-ECCcEEEEEeecCCCCCcccHHHHHHHHHHHHHHhcccchhhcc------
Confidence 46789999999999999999999999999 56999999999999999999888877777788988887654332
Q ss_pred HhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC
Q 015161 134 AGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG 213 (412)
Q Consensus 134 ~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG 213 (412)
. .+ + .+++|||+||||+.||. +.|. ...+...++++.+++++..++.+ ++||++||+|+|
T Consensus 74 -~---~~--~---~~~~aie~Al~Dl~~k~-~~~~--------~~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG 133 (307)
T TIGR01927 74 -D---QL--P---SVAFGFESALIELESGD-ELPP--------ASNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVG 133 (307)
T ss_pred -c---cC--c---HHHHHHHHHHHHHhcCC-CCCc--------ccccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeC
Confidence 1 01 1 26899999999999997 2221 12223346677788887776665 789999999999
Q ss_pred C-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 214 K-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 214 ~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
. ++++|+++|+++|++ ++++.|++|+|++|+.++|++++++|++ +++ .|||||++.+ +++++|++ ++
T Consensus 134 ~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~~--~~~~~l~~----~~ 205 (307)
T TIGR01927 134 VGELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRI--AFLEEPLPDA--DEMSAFSE----AT 205 (307)
T ss_pred CCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCc--eEEeCCCCCH--HHHHHHHH----hC
Confidence 5 788999999999997 6779999999999999999999999997 776 5999999876 78998874 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++.+.+++.++++.+++|++|+|++++| ++++++++++|+++|+++++|||+||+|++++++|+++++++.
T Consensus 206 ~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i~~aa~~hlaa~~~~~ 285 (307)
T TIGR01927 206 GTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSIALGQLARLAAKLSPD 285 (307)
T ss_pred CCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999999999999999998 9999999999999999999999999999999999999999887
Q ss_pred ceecccCCcc
Q 015161 368 KFIDLDTPLL 377 (412)
Q Consensus 368 ~~~e~~~p~~ 377 (412)
....++++..
T Consensus 286 ~~~~~~~~~~ 295 (307)
T TIGR01927 286 PAAVGFTTAL 295 (307)
T ss_pred CCCCCccHHH
Confidence 7777776544
No 24
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=5.2e-53 Score=404.19 Aligned_cols=250 Identities=32% Similarity=0.466 Sum_probs=230.8
Q ss_pred EEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHH
Q 015161 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (412)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (412)
+++++++|+++||.++.+++..++.++|||+|++|.+||||+.+.+
T Consensus 2 ~~~~~~lpl~~~~~~~~~~~~~~~~~~v~l~~~~G~~G~GE~~p~~---------------------------------- 47 (263)
T cd03320 2 RLYPYSLPLSRPLGTSRGRLTRRRGLLLRLEDLTGPVGWGEIAPLP---------------------------------- 47 (263)
T ss_pred ccEEEEeecCCcccccCceEEEEeEEEEEEecCCCCeeEEeccchH----------------------------------
Confidence 5678999999999999999999999999999999999999997632
Q ss_pred HHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeE
Q 015161 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLKL 210 (412)
Q Consensus 132 ~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~Ki 210 (412)
+++||||||||+.||..| ||. ++++|+|.+++..++ +..++++++.++||++||+
T Consensus 48 ----------------a~aaid~AlwDl~gk~~g-------gg~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~Gf~~~Ki 103 (263)
T cd03320 48 ----------------LAFGIESALANLEALLVG-------FTRPRNRIPVNALLPAGDA-AALGEAKAAYGGGYRTVKL 103 (263)
T ss_pred ----------------HHHHHHHHHhcccccccC-------CCCCccCcceeEEecCCCH-HHHHHHHHHHhCCCCEEEE
Confidence 379999999999999999 665 578999999888777 5557788888999999999
Q ss_pred ecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 211 KVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 211 KvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
|+|. ++++|+++|+++|+. ++++.|++|+|++|+.++|+++++.|+++++. |||||++++|++++++|+ +
T Consensus 104 Kvg~~~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~--~iEqP~~~~d~~~~~~l~------~ 175 (263)
T cd03320 104 KVGATSFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIE--YIEQPLPPDDLAELRRLA------A 175 (263)
T ss_pred EECCCChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCc--eEECCCChHHHHHHHHhh------c
Confidence 9985 678999999999998 67999999999999999999999999999874 999999999999998873 5
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||+++++.++.++++.+++|++|+|++++| ++++++++++|+++|+++++||++||+++.++++|+++++|+.
T Consensus 176 ~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa~~~~~ 255 (263)
T cd03320 176 GVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESSIGLGALAHLAAALPPL 255 (263)
T ss_pred CCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhHHHHHHHHHHHHhCCCC
Confidence 799999999999999999999999999999999998 9999999999999999999999999999999999999999874
No 25
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=100.00 E-value=6.7e-52 Score=414.03 Aligned_cols=287 Identities=17% Similarity=0.230 Sum_probs=245.1
Q ss_pred eeeEEEEEEEECCCcEEEEEeccCCccCccc-------HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcchh
Q 015161 73 QVENVAIRIELSNGCVGWGEAPVLPHVTAED-------QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFAS 144 (412)
Q Consensus 73 ~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~-------~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~ 144 (412)
..+.++|+|+|++|.+|||||.+. .|++++ ...+...++ .++|.|+|+|+.+++.+++.|......+..
T Consensus 48 ~~~~vlV~i~tddG~~G~GE~~~~-~ysg~~g~~~~~~~~~~~~~i~~~laP~LiG~d~~~~~~l~~~~~~~~~~~~~-- 124 (408)
T TIGR01502 48 PGESLSVLLVLEDGQVVHGDCAAV-QYSGAGGRDPLFLAKDFIPVIEKEVAPKLIGRDITNFKDMAEVFEKMTVNRNL-- 124 (408)
T ss_pred cCcEEEEEEEECCCCEEEEEeecc-eeccCccccccccHHHHHHHHHHHhhHHHcCCCccCHHHHHHHHHHHhhcCcc--
Confidence 467899999999999999999873 566653 455555565 489999999999999999999875311111
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCcHHHHhC------CCCCeeeeceeecC---CCHHHHHHHHHHHHHcC-CCEEeEecCC
Q 015161 145 QLKVRAAVEMALIDAVAKSVSMPLWRLFG------GVSNTITTDITIPI---VSPAEAAELASKYRKQG-FTTLKLKVGK 214 (412)
Q Consensus 145 ~~~a~saId~Al~Dl~gk~~g~Pl~~LLG------g~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~G-f~~~KiKvG~ 214 (412)
+.++++|||+||||++||..|+|+|+||| +..+++|+|.+++. .+++++...+++++++| |+.+| |+|.
T Consensus 125 ~~a~kaavd~AL~D~~ak~~g~pl~~LLG~~~~~~~~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~K-kvG~ 203 (408)
T TIGR01502 125 HTAIRYGVSQALLDAAAKTRKTTMAEVIRDEYNPGAETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVE-ELGL 203 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCcHHHHhCcccccCCcCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCcccee-eecC
Confidence 22478999999999999999999999998 55679999999875 56899999999999998 99999 8997
Q ss_pred Chh-------HHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHc----CCCCCceeecCCCCCC----
Q 015161 215 NLK-------EDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYE----MGVTPVLFEQPVHRDD---- 273 (412)
Q Consensus 215 ~~~-------~D~~~v~avr~~~~~~~l~vDaN~------~~~~~~A~~~~~~l~~----~~l~~~~iEeP~~~~d---- 273 (412)
+.. ++.++++++|+.+++..|++|+|+ +|++++|++++++|++ +++ |||||++.+|
T Consensus 204 ~~~k~~~~~~~~~~ri~~lr~~g~~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~---~iEqPv~~~d~~~~ 280 (408)
T TIGR01502 204 DGEKLLEYVKWLRDRIIKLGREGYAPIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHL---RIEGPMDVGSRQAQ 280 (408)
T ss_pred CHHHhhhhHHHHHHHHHHhhccCCCCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCe---EEecCCCCCcchhh
Confidence 644 444667777744668899999998 9999999999999986 553 9999999865
Q ss_pred HHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-ch
Q 015161 274 WEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ET 350 (412)
Q Consensus 274 ~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es 350 (412)
++++++|++.++ +.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|+|. ||
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~~es 360 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTCNET 360 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCCCCC
Confidence 999999986321 236899999999999999999999999999999999998 999999999999999999999986 99
Q ss_pred HHHHHHHHHHHccCCC
Q 015161 351 RLAMGFAGHLSAGLGC 366 (412)
Q Consensus 351 ~i~~~a~~hlaaa~~~ 366 (412)
+++.++++|++++++.
T Consensus 361 ~I~~aa~~Hlaaa~~~ 376 (408)
T TIGR01502 361 NRSAEVTTHVGMATGA 376 (408)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999998774
No 26
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=3.9e-51 Score=401.29 Aligned_cols=296 Identities=22% Similarity=0.236 Sum_probs=250.8
Q ss_pred eEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHH
Q 015161 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGS 128 (412)
Q Consensus 49 ~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~ 128 (412)
++|+++++++|++.||+++.++++.++.++|+|+ ++|++||||+.|.++|++|+..++...+....+.+++.+..+.
T Consensus 2 ~~i~~~~~~lpl~~p~~~a~g~~~~~~~viV~l~-d~G~~G~GE~~p~~~~~~et~~~~~~~l~~~~~~~~~~~~~~~-- 78 (322)
T PRK05105 2 RSAQLYRYQIPMDAGVPLRKQRLKTRDGLVVQLR-EGEREGWGEIAPLPGFSQETLEEAQEALLAWLNNWLAGDCDDE-- 78 (322)
T ss_pred cceEEEEEEEecCCCceecceEEEEeeeEEEEEE-ECCcEEEEEeCCCCCCCccCHHHHHHHHHHHHHHhhcCccccc--
Confidence 4799999999999999999999999999999997 8999999999999999999998887766653333444433321
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 129 ~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
....+ .+++++++|+||+.||..|.|++.. .+++..+++++.++++++ +||++|
T Consensus 79 ----------~~~~~---~a~~~i~~Al~dl~gk~~~~~~~~~-----------~~l~~~~~~~~~~~a~~~--~Gf~~~ 132 (322)
T PRK05105 79 ----------LSQYP---SVAFGLSCALAELAGTLPQAANYRT-----------APLCYGDPDELILKLADM--PGEKVA 132 (322)
T ss_pred ----------cccCc---HHHHHHHHHHHHhcCCCCCCCCcce-----------eeeecCCHHHHHHHHHHc--CCCCEE
Confidence 01222 3789999999999999999998621 234556788888888876 899999
Q ss_pred eEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 209 KLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 209 KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
|+|+| .++++|+++++++|++.+++.|++|+|++|++++|+++++++++ +++ .|||||++. .+++++|++
T Consensus 133 KvKvG~~~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i--~~iEqP~~~--~~~~~~l~~-- 206 (322)
T PRK05105 133 KVKVGLYEAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRI--AFLEEPCKT--PDDSRAFAR-- 206 (322)
T ss_pred EEEECCCCHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCc--cEEECCCCC--HHHHHHHHH--
Confidence 99999 57899999999999977899999999999999999999999998 877 599999964 556888764
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
++++||++|||+++.. +...+ .+++|++|+|++++| ++++++++++|+++|+++++|||+||+|+.++++|++++
T Consensus 207 --~~~~PIa~DEs~~~~~-~~~~~-~~~~d~i~ik~~k~GGi~~a~~i~~~A~~~gi~~~~~~~~es~i~~aa~~hla~~ 282 (322)
T PRK05105 207 --ATGIAIAWDESLREPD-FQFEA-EPGVRAIVIKPTLTGSLEKCQELIEQAHALGLRAVISSSIESSLGLTQLARLAAW 282 (322)
T ss_pred --hCCCCEEECCCCCchh-hhhhh-cCCCCEEEECccccCCHHHHHHHHHHHHHcCCcEEEECchhHHHHHHHHHHHHHh
Confidence 6789999999999985 44444 567999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCceecccCCcccccCCC
Q 015161 364 LGCFKFIDLDTPLLLSEDPV 383 (412)
Q Consensus 364 ~~~~~~~e~~~p~~~~~d~~ 383 (412)
+++..+++++++..+.+|+.
T Consensus 283 ~~~~~~~~l~t~~~~~~d~~ 302 (322)
T PRK05105 283 LTPDTIPGLDTLDLMQAQLV 302 (322)
T ss_pred cCCCCCCCCChHHHHhhccc
Confidence 96566777888777777754
No 27
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=6e-51 Score=399.84 Aligned_cols=282 Identities=20% Similarity=0.300 Sum_probs=237.0
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSV 129 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~ 129 (412)
+++++++++|++.||+++.++.+.++.++|+|+|++|++||||+.|.|.|++|+..++...++.+.|.+.++ ++
T Consensus 4 ~~~~~~~~lpl~~p~~~a~g~~~~~~~~iV~l~~~~G~~G~GE~~p~p~~~~et~~~~~~~l~~l~~~l~~~------~~ 77 (320)
T PRK02714 4 RFAFRPYQRPFRQPLQTAHGLWRIREGIILRLTDETGKIGWGEIAPLPWFGSETLEEALAFCQQLPGEITPE------QI 77 (320)
T ss_pred EEEEEEEEEecCCceEeccceEEEeEEEEEEEEeCCCCeEEEEecCCCCCCcccHHHHHHHHHhccccCCHH------HH
Confidence 577999999999999999999999999999999999999999999999999999887766555555544322 11
Q ss_pred HHHHHhhcCCCcchhhhHHHHHHHHHHHH-HHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEE
Q 015161 130 FGVVAGLLPGHQFASQLKVRAAVEMALID-AVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTL 208 (412)
Q Consensus 130 ~~~l~~~~~g~~~~~~~~a~saId~Al~D-l~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~ 208 (412)
..+... +. .+++|||+| || +.++..+. ....+ ..++.+.+++++.+++++++++||++|
T Consensus 78 -~~~~~~-----~~---~~~~aie~A-~d~~~~~~~~~--------~~~~~--~~~~~i~~~~~~~~~a~~~~~~G~~~~ 137 (320)
T PRK02714 78 -FSIPDA-----LP---ACQFGFESA-LENESGSRSNV--------TLNPL--SYSALLPAGEAALQQWQTLWQQGYRTF 137 (320)
T ss_pred -Hhhhhc-----CC---HHHHHHHHH-HHHHhcccccC--------CcCCC--ceeeecCCCHHHHHHHHHHHHcCCCEE
Confidence 111111 11 378999999 65 55444221 11223 334445566788889999999999999
Q ss_pred eEecCC-ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCCceeecCCCCCCHHHHHHhHHH
Q 015161 209 KLKVGK-NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTPVLFEQPVHRDDWEGLGHVSHI 283 (412)
Q Consensus 209 KiKvG~-~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~~~iEeP~~~~d~~~~~~l~~~ 283 (412)
|+|+|. ++++|+++|+++|++ ++++.|++|+|++|+.++|+++++.|++ +++ .|||||++.+|++++++|++
T Consensus 138 KvKvG~~~~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i--~~iEqP~~~~~~~~~~~l~~- 214 (320)
T PRK02714 138 KWKIGVDPLEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKI--EFIEQPLPPDQFDEMLQLSQ- 214 (320)
T ss_pred EEEECCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCc--cEEECCCCcccHHHHHHHHH-
Confidence 999995 578899999999997 7899999999999999999999999998 676 59999999999999999975
Q ss_pred hhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 284 AKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 284 ~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++++||++|||++++.++.++++.+++|++|+|++|+| ++++ .++|+++|+++++|||+||+|+.++++|+++
T Consensus 215 ---~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi~~~---~~~a~~~gi~~~~~~~~es~ig~aa~~hlaa 288 (320)
T PRK02714 215 ---DYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSPSRL---RQFCQQHPLDAVFSSVFETAIGRKAALALAA 288 (320)
T ss_pred ---hCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCHHHH---HHHHHHhCCCEEEEechhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999998 8755 4789999999999999999999999999999
Q ss_pred cCCC
Q 015161 363 GLGC 366 (412)
Q Consensus 363 a~~~ 366 (412)
++++
T Consensus 289 ~~~~ 292 (320)
T PRK02714 289 ELSR 292 (320)
T ss_pred hCCC
Confidence 9886
No 28
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=100.00 E-value=4.9e-51 Score=403.82 Aligned_cols=288 Identities=17% Similarity=0.248 Sum_probs=232.8
Q ss_pred eEEEEEEEECCCcEEEEEeccCC--ccCcccH----HHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcC-CCcchhhh
Q 015161 75 ENVAIRIELSNGCVGWGEAPVLP--HVTAEDQ----QTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLP-GHQFASQL 146 (412)
Q Consensus 75 ~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~~----~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~-g~~~~~~~ 146 (412)
+.++|||+|++|++||||+.+.. ..++++. ..+...++ .++|.|+|+|+.+++.+|+.|++.+. ++.. ..
T Consensus 13 ~~vlV~I~tddG~~G~GEa~~~~~~~~~g~~~~~~~~~~~~~i~~~lap~LiG~d~~~i~~i~~~m~~~~~~g~~~--~~ 90 (369)
T cd03314 13 EAISVMLVLEDGQVAVGDCAAVQYSGAGGRDPLFLAADFIPVIEKVIAPALVGRDVANFRPAAAVLDKMRLDGNRL--HT 90 (369)
T ss_pred cEEEEEEEECCCCEEEEecccccccCcCCcccccchHHHHHHHHHhhhhHhcCCCHHHHHHHHHHHHHHhhcCCcc--hh
Confidence 68999999999999999987531 1223322 22333444 48999999999999999999977432 3332 12
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhC-----CC-CCeeeeceeecCC---CHHHHHHHHHHHHH---------cCCCEE
Q 015161 147 KVRAAVEMALIDAVAKSVSMPLWRLFG-----GV-SNTITTDITIPIV---SPAEAAELASKYRK---------QGFTTL 208 (412)
Q Consensus 147 ~a~saId~Al~Dl~gk~~g~Pl~~LLG-----g~-~~~i~~~~~i~~~---~~~~~~~~~~~~~~---------~Gf~~~ 208 (412)
.++||||+||||++||.+|+|||+||| |. ++++|+|.+++.. ..+++.++++++++ +||+.+
T Consensus 91 aaksAIDiALwDl~gK~~g~Pv~~LLGg~~~~g~~r~~v~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kG~~~~ 170 (369)
T cd03314 91 AIRYGVSQALLDAVALAQRRTMAEVLCDEYGLPLADEPVPIFAQSGDDRYINVDKMILKGADVLPHALINNVEEKGPKGE 170 (369)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHcCCcccCCCcccceEEEEEecCcccccHHHHHHHHHhhhhhhhhhhHhhcCccHH
Confidence 478999999999999999999999999 42 5689999876543 34555565555543 366666
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCC----C--CHHHHHHHHHHHHcC-C-CCCceeecCCCCCC----HHH
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEG----Y--KPQEAVEVLEKLYEM-G-VTPVLFEQPVHRDD----WEG 276 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~----~--~~~~A~~~~~~l~~~-~-l~~~~iEeP~~~~d----~~~ 276 (412)
|+|+ ++++|.++++++|..++++.|++|+|++ | ++++|+++++.|+++ + + +.|||||++++| +++
T Consensus 171 K~~~--~~~~~~~~v~avr~~G~~~~l~vDaN~~w~~~~~~~~~~A~~~~~~Le~~~~~~-~~~iEqP~~~~d~~~~~~~ 247 (369)
T cd03314 171 KLLE--YVKWLSDRIRKLGRPGYHPILHIDVYGTIGQAFDPDPDRAADYLATLEEAAAPF-PLRIEGPMDAGSREAQIER 247 (369)
T ss_pred HHHH--hHHHHHHHHHHHhhcCCCCEEEEEcCCccccccCCCHHHHHHHHHHHHHhcCCC-cEEEecCCCCCcchhhHHH
Confidence 6664 4577899999999448999999999986 6 999999999999976 2 2 369999999865 899
Q ss_pred HHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHH
Q 015161 277 LGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLA 353 (412)
Q Consensus 277 ~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~ 353 (412)
|++|++..+ +.+++||++||+++++++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++. +|+++
T Consensus 248 ~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~a~Gi~~~~h~~~~es~I~ 327 (369)
T cd03314 248 MAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCKEHGVGAYLGGSCNETDIS 327 (369)
T ss_pred HHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHHHcCCcEEEeCCCCCchHH
Confidence 999985310 125899999999999999999999999999999999998 999999999999999999999874 99999
Q ss_pred HHHHHHHHccCCCC
Q 015161 354 MGFAGHLSAGLGCF 367 (412)
Q Consensus 354 ~~a~~hlaaa~~~~ 367 (412)
.++++|+++++++.
T Consensus 328 ~aa~lHlaaa~~~~ 341 (369)
T cd03314 328 ARVTVHVALATRAD 341 (369)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999998863
No 29
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=100.00 E-value=1.2e-49 Score=373.62 Aligned_cols=225 Identities=31% Similarity=0.545 Sum_probs=212.1
Q ss_pred EEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHH
Q 015161 51 AENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVF 130 (412)
Q Consensus 51 i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (412)
|+++++++|++.||.++.++...++.++|||+|++|++||||+
T Consensus 1 i~~~~~~~p~~~~~~~~~~~~~~~~~~iv~l~~~~G~~G~Ge~------------------------------------- 43 (229)
T cd00308 1 VEVYAVRLPTSRPFYLAGGTADTNDTVLVKLTTDSGVVGWGEV------------------------------------- 43 (229)
T ss_pred CEEEEEEeecCCceEecCceEeeceeEEEEEEECCCCcchhhH-------------------------------------
Confidence 4678999999999999999999999999999999999999997
Q ss_pred HHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEe
Q 015161 131 GVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITTDITIPIVSPAEAAELASKYRKQGFTTLK 209 (412)
Q Consensus 131 ~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~K 209 (412)
++||||||||++||.+|+|||+||||. ++++|+|.+
T Consensus 44 ------------------~~aid~Al~Dl~gk~~~~pl~~llgg~~~~~v~~~~~------------------------- 80 (229)
T cd00308 44 ------------------ISGIDMALWDLAAKALGVPLAELLGGGSRDRVPAYGS------------------------- 80 (229)
T ss_pred ------------------HHHHHHHHHHHhHhHcCCcHHHHcCCCCCCceeccHH-------------------------
Confidence 489999999999999999999999996 568888865
Q ss_pred EecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc
Q 015161 210 LKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF 288 (412)
Q Consensus 210 iKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~ 288 (412)
+++++++|+. ++++.|++|+|++|+.++|+++++.|+++++ .|||||++++|++++++|++ ..
T Consensus 81 ----------~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i--~~iEeP~~~~d~~~~~~L~~----~~ 144 (229)
T cd00308 81 ----------IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGL--AWIEEPCAPDDLEGYAALRR----RT 144 (229)
T ss_pred ----------HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCC--CeEECCCCccCHHHHHHHHh----hC
Confidence 8899999997 6799999999999999999999999999987 49999999999999999975 67
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCF 367 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~ 367 (412)
++||++||++.+..++.++++.+++|++|+|++++| ++++++++++|+++|+++++|++++|+++.++++|++++++|+
T Consensus 145 ~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~~~ 224 (229)
T cd00308 145 GIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALPND 224 (229)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCCCc
Confidence 899999999999999999999999999999999998 9999999999999999999999999999999999999999998
Q ss_pred ceec
Q 015161 368 KFID 371 (412)
Q Consensus 368 ~~~e 371 (412)
.++|
T Consensus 225 ~~~e 228 (229)
T cd00308 225 RAIE 228 (229)
T ss_pred hhhc
Confidence 7766
No 30
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=2.5e-48 Score=447.28 Aligned_cols=311 Identities=24% Similarity=0.305 Sum_probs=255.1
Q ss_pred cccccceeeEEeEEEEEEEEeccccceeccCcee--eeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHH---H--
Q 015161 38 KNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRL--DQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMV---K-- 110 (412)
Q Consensus 38 ~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~--~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~---~-- 110 (412)
......+.|||++|+++++++||+.||+++.|++ ..++.++|+|+|++|.+||||+.|.+. +.|+...+.. .
T Consensus 923 ~~~~~~~~~~I~~i~~~~~~lpl~~p~~~a~g~~~~~~r~~~lV~l~~ddG~~G~GEa~pl~~-~~et~~~~~~~l~~~~ 1001 (1655)
T PLN02980 923 SIIDGVFLCKISGMEYSLYRIQLCAPPTSASVDFSQFHREGFILSLSLEDGSVGFGEVAPLEI-HEEDLLDVEEQLRFLL 1001 (1655)
T ss_pred ccccccccceEeEEEEEEEEeeccCCcEeeccccccceeeEEEEEEEECCCCEEEEecCCCCC-CccccccHHHHHHHHH
Confidence 3445678999999999999999999999998753 458999999999999999999998753 4454332211 1
Q ss_pred --H-----HHHhHHHcCCCCCCHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC------
Q 015161 111 --A-----SEACEVLKESPAMALGSVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN------ 177 (412)
Q Consensus 111 --~-----~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~------ 177 (412)
+ +.+.|.++|++. +.++..+.. ..+..++ .+++||||||||++||..|+|+|+||||.++
T Consensus 1002 ~~l~~~~~~~l~p~l~G~~~---~~~~~~l~~-~~~~~~p---sa~~ald~ALwDl~gk~~g~Pl~~LLGg~~~~~~~~~ 1074 (1655)
T PLN02980 1002 HVIKGAKISFMLPLLKGSFS---SWIWSELGI-PPSSIFP---SVRCGLEMAILNAIAVRHGSSLLNILDPYQKDENGSE 1074 (1655)
T ss_pred HHHhhhhhhhhhHhhcCcch---HHHHHHhhc-cccccch---HHHHHHHHHHHHHHHHHcCCcHHHHhCCCCCCcceec
Confidence 1 124677888743 333444421 1112223 4899999999999999999999999998432
Q ss_pred ---eeeeceee-cCCCHHHHHHHHHHHHHcCCCEEeEecCC--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 015161 178 ---TITTDITI-PIVSPAEAAELASKYRKQGFTTLKLKVGK--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 178 ---~i~~~~~i-~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~ 250 (412)
.+|++..+ +..+++++.+++++++++||+++|+|+|. ++++|+++|+++|++ ++++.||+|+|++|+.++|++
T Consensus 1075 ~~~~v~v~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KlKvG~~~~~~~D~~~i~alRe~~G~~~~LrlDAN~~ws~~~A~~ 1154 (1655)
T PLN02980 1075 QSHSVQICALLDSNGSPLEVAYVARKLVEEGFSAIKLKVGRRVSPIQDAAVIQEVRKAVGYQIELRADANRNWTYEEAIE 1154 (1655)
T ss_pred cccceeeeeccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 34444444 35588999999999999999999999994 688999999999997 789999999999999999999
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH-----HHHHHHcCCCCEEEecCCCCc-
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD-----VKKIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~-----~~~~i~~~a~d~v~ik~~~~G- 324 (412)
++++|+++++. |||||++ +.+++++|++ ++++||++||++++..+ ++++++.+ ++++++|++++|
T Consensus 1155 ~~~~L~~~~i~--~iEqPl~--~~~~l~~l~~----~~~iPIA~DEs~~~~~~~~~~~~~~~i~~~-~~~i~iK~~~~GG 1225 (1655)
T PLN02980 1155 FGSLVKSCNLK--YIEEPVQ--DEDDLIKFCE----ETGLPVALDETIDKFEECPLRMLTKYTHPG-IVAVVIKPSVVGG 1225 (1655)
T ss_pred HHHHHhhcCCC--EEECCCC--CHHHHHHHHH----hCCCCEEeCCCcCCcccchHHHHHHHHHCC-CeEEEeChhhhCC
Confidence 99999999874 9999997 4678888874 68999999999998653 67777776 457899999998
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++++++++|+++|+++++||++||+|++++++|++++++
T Consensus 1226 it~~~~ia~~A~~~gi~~~~~s~~es~Ig~aA~~hlaa~~~ 1266 (1655)
T PLN02980 1226 FENAALIARWAQQHGKMAVISAAYESGLGLSAYIQFASYLE 1266 (1655)
T ss_pred HHHHHHHHHHHHHcCCeEEecCcccCHHHHHHHHHHHHhch
Confidence 99999999999999999999999999999999999999874
No 31
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=100.00 E-value=6e-42 Score=335.17 Aligned_cols=280 Identities=26% Similarity=0.398 Sum_probs=230.6
Q ss_pred EEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHHHhHHHcCCCCCCHHHHHH
Q 015161 52 ENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASEACEVLKESPAMALGSVFG 131 (412)
Q Consensus 52 ~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 131 (412)
++..+++||+..| ..++.|+.++++ |-.||||.+|.+.|+.|.. .. |
T Consensus 13 ~~~~~~~p~~~~~----~~~~~r~~~~~~-----~~~~w~e~~p~~~~~~~~~----------~~-------------~- 59 (327)
T PRK02901 13 RAHVVALPMRVRF----RGITVREAVLIE-----GPAGWGEFSPFLEYDPAEA----------AA-------------W- 59 (327)
T ss_pred cCeEEeccccccc----CCcceeEEEEEe-----cCCceEEecCCCCCCHHHH----------HH-------------H-
Confidence 3456778887443 456678999998 9999999999887765411 00 0
Q ss_pred HHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEe
Q 015161 132 VVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLK 211 (412)
Q Consensus 132 ~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiK 211 (412)
..+++|.|- .|-|- ..+++||+|.+++..+++++.+.++++ .||+++|+|
T Consensus 60 ----------------~~~~~~~~~-------~~~~~-----~~r~~vp~~~tv~~~~~e~~~~~~~~~--~G~~~~KvK 109 (327)
T PRK02901 60 ----------------LASAIEAAY-------GGPPP-----PVRDRVPVNATVPAVDAAQVPEVLARF--PGCRTAKVK 109 (327)
T ss_pred ----------------HHHHHHhhh-------ccCCc-----ccCCeEEeeEEeCCCCHHHHHHHHHHh--CCCCEEEEE
Confidence 124444432 11121 335689999998888887776666554 699999999
Q ss_pred cCC---ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 212 VGK---NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 212 vG~---~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
+|. ++++|+++|+++|++ ||++.|++|+|++||+++|+++++.| +++++ .||||||+. ++++++|++
T Consensus 110 Vg~~~~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l--~~iEqP~~~--~~~la~Lr~---- 181 (327)
T PRK02901 110 VAEPGQTLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPL--EYVEQPCAT--VEELAELRR---- 181 (327)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCc--eEEecCCCC--HHHHHHHHH----
Confidence 973 689999999999997 79999999999999999999999999 78887 499999974 889999875
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCC
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~ 365 (412)
++++||++|||+++..++.++++.+++|++|+|++++| ++++++ +|+++|+++++||+++|++++++++|++++++
T Consensus 182 ~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGit~~lk---iA~~~gi~v~v~s~~es~ig~aA~lhlaaalp 258 (327)
T PRK02901 182 RVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGVRAALD---IAEQIGLPVVVSSALDTSVGIAAGLALAAALP 258 (327)
T ss_pred hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCHHHHHH---HHHHcCCcEEEeCCcccHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999998 999887 57999999999999999999999999999999
Q ss_pred CCce-ecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCCC
Q 015161 366 CFKF-IDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDNI 411 (412)
Q Consensus 366 ~~~~-~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~~ 411 (412)
++.+ +++++...+..|+ .+++.++||++++|+ +++|++.+
T Consensus 259 ~~~~~~gl~t~~~~~~dl-~~~l~~~dG~i~vp~-----v~~d~~~l 299 (327)
T PRK02901 259 ELDHACGLATGGLFEEDV-ADPLLPVDGFLPVRR-----VTPDPARL 299 (327)
T ss_pred CCCcccccCchhhhhhcc-CCCceeeCCEEeCCC-----CCCCHHHH
Confidence 8776 6776544455677 677889999999998 78998765
No 32
>PRK00077 eno enolase; Provisional
Probab=100.00 E-value=4.2e-41 Score=340.95 Aligned_cols=303 Identities=21% Similarity=0.280 Sum_probs=237.3
Q ss_pred eEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHH
Q 015161 46 VDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMV 109 (412)
Q Consensus 46 mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~ 109 (412)
|+|++|..+.+- .|.| ++++.|+|+|++|.+|+|+++... .|.++++..++.
T Consensus 2 ~~I~~v~~r~i~--------dsrg----~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~ 69 (425)
T PRK00077 2 SKIEDIIAREIL--------DSRG----NPTVEVEVTLEDGAFGRAAVPSGASTGEREAVELRDGDKSRYLGKGVLKAVE 69 (425)
T ss_pred CeEEEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEEEeccCCCCcceeeecCCCCccccCCcCHHHHHH
Confidence 589999998873 3334 478999999999999999986321 245666777777
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC---eeeecee
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN---TITTDIT 184 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~---~i~~~~~ 184 (412)
.++ .+.|.|+|+|+.+++.+++.|.+......+. ...+|++|||||+||+.||.+|+|||+||||..+ ++|.|..
T Consensus 70 ~v~~~iap~LiG~d~~d~~~id~~l~~ldgt~~~~~~G~nAi~avsiAl~da~ak~~g~PLy~lLGG~~~~~~pvp~~n~ 149 (425)
T PRK00077 70 NVNEEIAPALIGLDALDQRAIDKAMIELDGTPNKSKLGANAILGVSLAVAKAAADSLGLPLYRYLGGPNAKVLPVPMMNI 149 (425)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhhCccccCccchHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCcccccceeEEE
Confidence 775 5899999999999999999987642111110 0126899999999999999999999999999643 4555544
Q ss_pred ecC----CCH---HH---------HHHHHHHHHHcCCCEEeE---------ecC------CChhHHHHHHHHHHHh----
Q 015161 185 IPI----VSP---AE---------AAELASKYRKQGFTTLKL---------KVG------KNLKEDIEVLRAIRAV---- 229 (412)
Q Consensus 185 i~~----~~~---~~---------~~~~~~~~~~~Gf~~~Ki---------KvG------~~~~~D~~~v~avr~~---- 229 (412)
++. ..+ .+ ..+++.+...++|+.+|. ++| ++++.|.++|+.+|++
T Consensus 150 i~GG~ha~~~~~~qe~~i~p~~~~~~~ea~~~~~~~~~~lK~~l~~~g~~~~vGdeGg~~p~~~~~~e~l~~lreAi~~a 229 (425)
T PRK00077 150 INGGAHADNNVDIQEFMIMPVGAPSFKEALRMGAEVFHTLKKVLKEKGLSTAVGDEGGFAPNLKSNEEALDLILEAIEKA 229 (425)
T ss_pred EcccccccCchhhhHhhcCCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCcCCcCCCccchHHHHHHHHHHHHHh
Confidence 321 111 11 124444555667888886 355 4568899999999986
Q ss_pred ----CCCcEEEEeCC-------C-------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc--
Q 015161 230 ----HPDSSFILDAN-------E-------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-- 288 (412)
Q Consensus 230 ----~~~~~l~vDaN-------~-------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-- 288 (412)
|+++.|++|+| + .|+++++++++.+ +++|++ .|||||++++|++++++|++ ++
T Consensus 230 g~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i--~~iEdPl~~~D~~g~~~L~~----~~~~ 303 (425)
T PRK00077 230 GYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPI--VSIEDGLDENDWEGWKLLTE----KLGD 303 (425)
T ss_pred cCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCc--EEEEcCCCCccHHHHHHHHH----hcCC
Confidence 57899999993 4 3577788776555 566887 59999999999999999986 45
Q ss_pred CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCcchHHHHHHHHHHHccCC
Q 015161 289 GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 289 ~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~-~~~~es~i~~~a~~hlaaa~~ 365 (412)
.+||++||+ ++++++++++++.+++|++|+|++++| ++++++++++|+++|+.+++ |++.||..+..+.+|++++.+
T Consensus 304 ~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~vsh~sgEt~d~~~a~lava~~~~ 383 (425)
T PRK00077 304 KVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAIELAKRAGYTAVVSHRSGETEDTTIADLAVATNAG 383 (425)
T ss_pred CCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEeCCCCcchHHHHHHHHHHhCCc
Confidence 599999997 567999999999999999999999998 99999999999999998766 888899999988888887665
Q ss_pred C
Q 015161 366 C 366 (412)
Q Consensus 366 ~ 366 (412)
.
T Consensus 384 ~ 384 (425)
T PRK00077 384 Q 384 (425)
T ss_pred c
Confidence 3
No 33
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=100.00 E-value=3.6e-40 Score=332.48 Aligned_cols=289 Identities=19% Similarity=0.281 Sum_probs=227.7
Q ss_pred eeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL 136 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 136 (412)
++++.|+|+|++|.+|+|++++.. .|+++++..++..++ .+.|.|+|+++.+++.+++.|.+.
T Consensus 13 ~ptvev~v~~~~g~~g~a~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~dq~~id~~l~~~ 92 (408)
T cd03313 13 NPTVEVEVTTEDGGVGRAAVPSGASTGEHEAVELRDGDKSRYLGKGVLKAVKNVNEIIAPALIGMDVTDQRAIDKLLIEL 92 (408)
T ss_pred CceEEEEEEECCCCEEEEeecCCCCCCcceeeecCCCCcccccCCcHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 478999999999999999986521 266778888888776 489999999999999999998754
Q ss_pred cCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCC-eeeec--eeecC--C-----C-------H--HHHHHH
Q 015161 137 LPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSN-TITTD--ITIPI--V-----S-------P--AEAAEL 196 (412)
Q Consensus 137 ~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~-~i~~~--~~i~~--~-----~-------~--~~~~~~ 196 (412)
....... ...+|++|||||+||+.||.+|+|||++|||..+ ++|++ ..++. . + | .+..++
T Consensus 93 dgt~~~~~~G~nAi~avsiAl~da~A~~~g~PLy~~Lgg~~~~~lpvp~~nvi~GG~ha~~~~~iqe~~i~p~~~~~~~e 172 (408)
T cd03313 93 DGTPNKSKLGANAILGVSLAVAKAAAAALGLPLYRYLGGLAAYVLPVPMFNVINGGAHAGNKLDFQEFMIVPVGAPSFSE 172 (408)
T ss_pred cCCCcccccchHHHHHHHHHHHHHHHHHcCCcHHHHhcCCCCcccceeeEEEecCcccccCccccccccccccCccCHHH
Confidence 2111110 0136899999999999999999999999999644 45444 32221 0 1 1 223456
Q ss_pred HHHHHHcCCCEEe-----------EecC------CChhHHHHHHHHHHHh--------CCCcEEEEeC------------
Q 015161 197 ASKYRKQGFTTLK-----------LKVG------KNLKEDIEVLRAIRAV--------HPDSSFILDA------------ 239 (412)
Q Consensus 197 ~~~~~~~Gf~~~K-----------iKvG------~~~~~D~~~v~avr~~--------~~~~~l~vDa------------ 239 (412)
+.++..+||+.+| +++| ++++.|.++|+.+|++ |+++.|++|+
T Consensus 173 a~~~~~~~~~~lK~~l~~~~g~~~~~vgdeGg~~p~~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~ 252 (408)
T cd03313 173 ALRMGAEVYHTLKKVLKKKGGLLATNVGDEGGFAPNLSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYV 252 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccccccccccCcCCCCCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcce
Confidence 6777788999988 3344 4667899988888773 3489999999
Q ss_pred -----CCCCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CCCHHHHHHHHHcCC
Q 015161 240 -----NEGYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CRSLDDVKKIVKGNL 312 (412)
Q Consensus 240 -----N~~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~~~~~~~~~i~~~a 312 (412)
|+.|++++++++++.| ++|++ .|||||++++|++++++|++.+ ...+||++||+ ++++++++++++.++
T Consensus 253 ~~~~~~~~~t~~eai~~~~~l~e~~~i--~~iEdPl~~~D~eg~~~L~~~~--g~~ipi~gdE~~~~~~~~~~~~i~~~a 328 (408)
T cd03313 253 YDSDEGKKLTSEELIDYYKELVKKYPI--VSIEDPFDEDDWEGWAKLTAKL--GDKIQIVGDDLFVTNPERLKKGIEKKA 328 (408)
T ss_pred eccCCCcccCHHHHHHHHHHHHHhCCc--EEEEeCCCCcCHHHHHHHHHhc--CCCCeEEcCCcccCCHHHHHHHHHhCC
Confidence 4558889999988886 56887 5999999999999999998621 13799999995 578999999999999
Q ss_pred CCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEE-ccCcchHHHHHHHHHHHccCCC
Q 015161 313 ADVINIKLAKVG-VLGALEIIEVVRASGLNLMI-GGMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 313 ~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~-~~~~es~i~~~a~~hlaaa~~~ 366 (412)
+|++++|++++| ++++++++++|+++|+++++ |++.||..+..+.+|++.+.+.
T Consensus 329 ~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~sh~sget~d~~~adlava~~~~~ 384 (408)
T cd03313 329 ANALLIKVNQIGTLTETIEAIKLAKKNGYGVVVSHRSGETEDTFIADLAVALGAGQ 384 (408)
T ss_pred CCEEEEcccccCCHHHHHHHHHHHHHcCCeEEccCCCchhHHHHHHHHHHHhCcCc
Confidence 999999999998 99999999999999999977 7777988876666666655443
No 34
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=100.00 E-value=2e-39 Score=328.73 Aligned_cols=289 Identities=21% Similarity=0.278 Sum_probs=221.4
Q ss_pred eeEEEEEEEECCCcEEEEEeccCCc----------------cCcccHHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLPH----------------VTAEDQQTAMVKAS-EACEVLKESPAMALGSVFGVVAGL 136 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~~----------------~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~ 136 (412)
.+++.|+|+|++|.+|+++++...+ |.+.++..++..++ .+.|.|+|+|+.+++.+++.|.+.
T Consensus 15 ~ptvev~v~~~~g~~g~~~~psgas~g~~ea~~~~d~~~~~~~g~~v~~av~~i~~~iap~LiG~d~~d~~~id~~l~~~ 94 (425)
T TIGR01060 15 NPTVEVEVILEDGTFGRAAVPSGASTGEREALELRDGDKKRYLGKGVLKAVENVNDIIAPALIGMDAFDQREIDQIMIEL 94 (425)
T ss_pred CceEEEEEEECCCCEEEEeccCCCCCCcceeeeccCCCccccCCcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999865311 33345566777665 489999999999999999999763
Q ss_pred cCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-Ceeeeceee--c--C--C---CHHHH---------HHH
Q 015161 137 LPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-NTITTDITI--P--I--V---SPAEA---------AEL 196 (412)
Q Consensus 137 ~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~~i~~~~~i--~--~--~---~~~~~---------~~~ 196 (412)
....... ...+|++|||||+||+.||.+|+|||+||||.. .++|++... . . . +.++. .++
T Consensus 95 d~t~~~~~~G~nAi~avs~Al~da~ak~~g~Ply~lLGG~~~~~lPvp~~n~i~GG~~a~~~~~~qe~~i~p~~a~~~~e 174 (425)
T TIGR01060 95 DGTPNKSKLGANAILGVSMAVAKAAAKSLGLPLYRYLGGKNAYVLPVPMMNIINGGAHADNNLDFQEFMIMPVGAKSFRE 174 (425)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhCCcHHHHhCCCCCCceeeEEEEeecccccccCccCHHHHhccccchHHHHH
Confidence 1111111 123689999999999999999999999999964 477766442 1 1 1 23332 233
Q ss_pred HHHHHHcCCCEEe--Ee-------cC------CChh---HHHHHH-HHHHH---h-CCCcEEEEeCCC--C---------
Q 015161 197 ASKYRKQGFTTLK--LK-------VG------KNLK---EDIEVL-RAIRA---V-HPDSSFILDANE--G--------- 242 (412)
Q Consensus 197 ~~~~~~~Gf~~~K--iK-------vG------~~~~---~D~~~v-~avr~---~-~~~~~l~vDaN~--~--------- 242 (412)
+.+...+||+.+| +| +| ++++ ++++.+ +++++ . |+++.|++|+|. .
T Consensus 175 ~~~~~~~g~~~lK~~l~~~~~~~~vGdeGg~~p~~~~~~~~l~~~~~ai~~~~~~~G~di~l~lD~aas~~~~~~~~~y~ 254 (425)
T TIGR01060 175 ALRMGAEVFHALKKLLKEKGLATGVGDEGGFAPNLASNEEALEIISEAIEKAGYKPGEDVALALDCAASEFYDEEDGKYV 254 (425)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcccccCCCccccHHHHHHHHHHHHHHhhccCCceEEEEEccccccccccCceee
Confidence 3444447899999 44 45 2222 333333 44444 3 578999999983 2
Q ss_pred -------CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc--CCeEEeCCCC-CCHHHHHHHHHcC
Q 015161 243 -------YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF--GVSVAADESC-RSLDDVKKIVKGN 311 (412)
Q Consensus 243 -------~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs~-~~~~~~~~~i~~~ 311 (412)
|+.++++++++. +++|++ .|||||++++|++++++|++ ++ .+||++||+. +++.+++++++.+
T Consensus 255 ~~~~~~~~s~~eai~~~~~lle~~~i--~~iEdPl~~~D~~~~~~L~~----~~~~~ipI~gDE~~~t~~~~~~~~i~~~ 328 (425)
T TIGR01060 255 YKGENKQLTSEEMIEYYKELVEKYPI--VSIEDGLSEEDWEGWAELTK----ELGDKVQIVGDDLFVTNTEILREGIEMG 328 (425)
T ss_pred ecCcccccCHHHHHHHHHHHHhcCCc--EEEEcCCCcccHHHHHHHHH----hcCCCCeEEeCCCcccCHHHHHHHHHhC
Confidence 466799999995 688987 59999999999999999986 45 7999999985 5699999999999
Q ss_pred CCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE-EccCcchHHHHHHHHHHHccCCCCc
Q 015161 312 LADVINIKLAKVG-VLGALEIIEVVRASGLNLM-IGGMVETRLAMGFAGHLSAGLGCFK 368 (412)
Q Consensus 312 a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~-~~~~~es~i~~~a~~hlaaa~~~~~ 368 (412)
++|++++|++++| ++++++++++|+++|+.++ .|++.||.++..+.+|++++.+...
T Consensus 329 a~d~v~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~sgEt~d~~~a~lava~~~~~ik 387 (425)
T TIGR01060 329 VANSILIKPNQIGTLTETLDAVELAKKAGYTAVISHRSGETEDTTIADLAVALNAGQIK 387 (425)
T ss_pred CCCEEEecccccCCHHHHHHHHHHHHHcCCcEEEecCCcccHHHHHHHHHHHhCcCccc
Confidence 9999999999998 9999999999999999955 5777899999999999988776443
No 35
>PLN00191 enolase
Probab=100.00 E-value=1.5e-33 Score=285.50 Aligned_cols=303 Identities=18% Similarity=0.234 Sum_probs=229.7
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCc----------EEEEEeccCCc----cCcccHHHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLPH----VTAEDQQTAMVK 110 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~~----~~~e~~~~~~~~ 110 (412)
+|+|++|..+.+- .|.| +++|.|+|+|++|. +|++|+..... |.+..+..++..
T Consensus 25 ~~~I~~v~~r~il--------dsrG----~PtVeveV~~~~G~~~a~~psgastG~~Ea~elrd~~~~~~g~gv~~Av~~ 92 (457)
T PLN00191 25 MATITKVKARQII--------DSRG----NPTVEVDLHTSKGMFRAAVPSGASTGIYEALELRDGDKDYLGKGVLKAVKN 92 (457)
T ss_pred CCeeeEEEEEEEE--------cCCC----CeEEEEEEEECCCCEEEEeccCCCCCcceeeeccCCCcccCCccHHHHHHH
Confidence 3699999998873 3444 47899999999998 78888753311 445667777777
Q ss_pred HH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCC-CCeeeecee
Q 015161 111 AS-EACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF---GGV-SNTITTDIT 184 (412)
Q Consensus 111 ~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL---Gg~-~~~i~~~~~ 184 (412)
++ .+.|.|+|+++.+.+.+++.|.+........ ...+|+.||+||+|++.|+.+|+|||++| ||. ...+|++..
T Consensus 93 v~~~ia~~LiG~~~~dq~~iD~~l~~ldgt~nk~~lGanailavS~A~a~AaA~~~~~PLy~~l~~~gg~~~~~lP~p~~ 172 (457)
T PLN00191 93 VNEIIAPALIGMDPTDQTQIDNFMLELDGTPNKGKLGANAILAVSLAVCKAGAAEKGVPLYKHIADLAGNKKLVLPVPAF 172 (457)
T ss_pred HHHHHHHHHcCCChhhHHHHHHHHHHccCCCCccccchhHHHHHHHHHHHHHHHHcCCcHHHHHHhhCCCCCccccceeE
Confidence 75 4899999999999999998887643111110 02368999999999999999999999999 774 345666541
Q ss_pred --e--c----------------C--CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CChhHHHHHHHHHH
Q 015161 185 --I--P----------------I--VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNLKEDIEVLRAIR 227 (412)
Q Consensus 185 --i--~----------------~--~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~~~D~~~v~avr 227 (412)
+ + . .+..+..+. ..+..+. |... ..+| ++++.+.+.|+.++
T Consensus 173 niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGg~ap~~~~~~eal~ll~ 250 (457)
T PLN00191 173 NVINGGSHAGNKLAMQEFMILPVGASSFKEAMQMGSEVYHHLKAVIKKKYGQDA--CNVGDEGGFAPNIQDNKEGLELLK 250 (457)
T ss_pred EeecCccccccccchheeeecCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--CccCCCCCcCCCCCCHHHHHHHHH
Confidence 1 1 1 122222221 1111111 3321 1233 35666667666666
Q ss_pred Hh----C--CCcEEEEeCCCC--------C---------------CHHHHHHHHHHHHc-CCCCCceeecCCCCCCHHHH
Q 015161 228 AV----H--PDSSFILDANEG--------Y---------------KPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 228 ~~----~--~~~~l~vDaN~~--------~---------------~~~~A~~~~~~l~~-~~l~~~~iEeP~~~~d~~~~ 277 (412)
++ + +++.|.+|++.+ | |.++++++++.|.+ |++ .|||||++.+|++++
T Consensus 251 eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I--~~IEDPl~~~D~eg~ 328 (457)
T PLN00191 251 EAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPI--VSIEDPFDQDDWEHW 328 (457)
T ss_pred HHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCc--EEEECCCCcccHHHH
Confidence 64 3 479999998543 3 78899999999654 886 599999999999999
Q ss_pred HHhHHHhhcccCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHHH
Q 015161 278 GHVSHIAKDKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLAM 354 (412)
Q Consensus 278 ~~l~~~~~~~~~ipIa~dEs~-~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~~ 354 (412)
++|++ +..+||++||+. +++++++++++.+++|++++|++++| ++++++++++|+++|+.+++|+ |.||+++.
T Consensus 329 ~~Lt~----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~ishrsgET~d~~ 404 (457)
T PLN00191 329 AKLTS----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMTSHRSGETEDSF 404 (457)
T ss_pred HHHHc----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEeCCCCccchHHH
Confidence 99985 578999999985 88999999999999999999999998 9999999999999999999966 89999999
Q ss_pred HHHHHHHccCCCC
Q 015161 355 GFAGHLSAGLGCF 367 (412)
Q Consensus 355 ~a~~hlaaa~~~~ 367 (412)
.+.+|++++.+..
T Consensus 405 ~Adlava~~~~~i 417 (457)
T PLN00191 405 IADLAVGLATGQI 417 (457)
T ss_pred HHHHHHHhCCCcc
Confidence 9999999987644
No 36
>PTZ00081 enolase; Provisional
Probab=100.00 E-value=5.5e-31 Score=265.93 Aligned_cols=300 Identities=20% Similarity=0.283 Sum_probs=218.3
Q ss_pred eeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCc----------EEEEEeccCC-----ccCcccHHHHHH
Q 015161 45 TVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGC----------VGWGEAPVLP-----HVTAEDQQTAMV 109 (412)
Q Consensus 45 ~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~----------~G~GE~~~~~-----~~~~e~~~~~~~ 109 (412)
+|+|++|..+.+- .|.| +++|.|+|+|++|. +|++|+.... .|.+..+..++.
T Consensus 1 ~~~I~~v~~r~i~--------dSrg----~ptvev~v~~~~G~~~a~~psgastG~~Ea~elrd~~~~~y~g~gv~~Av~ 68 (439)
T PTZ00081 1 MSTIKSIKAREIL--------DSRG----NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSRYLGKGVLKAVE 68 (439)
T ss_pred CcEEEEEEEEEEe--------cCCC----CceEEEEEEECCCCEEEecccCCCCceeeEeeccCCCccccCCccHHHHHH
Confidence 4799999998873 3444 47899999999998 8999985422 245566777777
Q ss_pred HHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCC-c-----ch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh---CCCC--
Q 015161 110 KAS-EACEVLKESPAMALGSVFGVVAGLLPGH-Q-----FA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF---GGVS-- 176 (412)
Q Consensus 110 ~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~-~-----~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL---Gg~~-- 176 (412)
.++ .+.|.|+|+++.+.+.+++.|.+.+.|. . .. ...+|+.||+||+|++.|+..|+|||++| ||..
T Consensus 69 ~v~~~i~~~LiG~d~~dq~~iD~~l~~~ldgt~n~~~~~ks~lGanailavS~A~a~AaA~~~~~PLy~yL~~~~g~~~~ 148 (439)
T PTZ00081 69 NVNEIIAPALIGKDVTDQKKLDKLMVEQLDGTKNEWGWCKSKLGANAILAVSMAVARAAAAAKGVPLYKYLAQLAGKPTD 148 (439)
T ss_pred HHHHHHHHHHcCCChhhHHHHHHHHHHhccCCcccccccccccchHHHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCccC
Confidence 775 4899999999999999999887731111 0 10 02368999999999999999999999999 6641
Q ss_pred -C--eeeeceeecC--------------------CCHHHHHHH-------HHHHHHc--CCCEEeEecC------CChhH
Q 015161 177 -N--TITTDITIPI--------------------VSPAEAAEL-------ASKYRKQ--GFTTLKLKVG------KNLKE 218 (412)
Q Consensus 177 -~--~i~~~~~i~~--------------------~~~~~~~~~-------~~~~~~~--Gf~~~KiKvG------~~~~~ 218 (412)
. ++|++..+.. .+..+..+. .++..+. |... ..+| ++++.
T Consensus 149 ~~~lP~P~~niinGG~ha~~~~~~qefmi~P~ga~s~~ea~~~~~ev~~~l~~il~~~~g~~~--~~vgdeGgfap~~~~ 226 (439)
T PTZ00081 149 KFVLPVPCFNVINGGKHAGNKLAFQEFMIAPVGAPSFKEALRMGAEVYHSLKSVIKKKYGLDA--TNVGDEGGFAPNIKD 226 (439)
T ss_pred CccccceeEEeccCcccccccccceEEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccccCCCcCCCCCC
Confidence 1 3344432211 122222221 1222221 3321 1233 34445
Q ss_pred HHHHHHHHHH----hC--CCcEEEEeCCC------------------------CCCHHHHHHHH-HHHHcCCCCCceeec
Q 015161 219 DIEVLRAIRA----VH--PDSSFILDANE------------------------GYKPQEAVEVL-EKLYEMGVTPVLFEQ 267 (412)
Q Consensus 219 D~~~v~avr~----~~--~~~~l~vDaN~------------------------~~~~~~A~~~~-~~l~~~~l~~~~iEe 267 (412)
+.+.++.+++ ++ +++.|.+|+.. .++.+|.++++ +.+++|++ .||||
T Consensus 227 ~eeal~ll~eAi~~ag~~~~v~i~lD~Aase~~~~~~~~Y~~~f~~~~~~~~~~~s~~eli~~~~~~l~~y~I--~~IED 304 (439)
T PTZ00081 227 PEEALDLLVEAIKKAGYEGKVKICMDVAASEFYDKEKKVYDLDFKNPNNDKSNKLTGEELVELYLDLVKKYPI--VSIED 304 (439)
T ss_pred HHHHHHHHHHHHHHcCCcCceEEEEehhhhhhhhccCCceeeeeccccCccccccCHHHHHHHHHHHHhcCCc--EEEEc
Confidence 5555555544 43 46888888643 35667777755 56899987 59999
Q ss_pred CCCCCCHHHHHHhHHHhhccc--CCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEE
Q 015161 268 PVHRDDWEGLGHVSHIAKDKF--GVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~--~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~ 343 (412)
|++++|++++++|++ ++ .+||++||. ++++.++++.++.+++|++++|++++| ++++++++++|+++|+.++
T Consensus 305 Pl~~~D~eg~~~Lt~----~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~i 380 (439)
T PTZ00081 305 PFDQDDWEAYAKLTA----AIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVM 380 (439)
T ss_pred CCCcccHHHHHHHHH----hhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHHHHHHHHHHcCCcEE
Confidence 999999999999986 45 799999997 677999999999999999999999998 9999999999999999999
Q ss_pred EccCc-chHHHHHHHHHHHccCCC
Q 015161 344 IGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 344 ~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
+|++. ||. ..+.+|||.|+++
T Consensus 381 ishrsgETe--d~~iadLAVa~~~ 402 (439)
T PTZ00081 381 VSHRSGETE--DTFIADLVVGLGT 402 (439)
T ss_pred EeCCCchhH--HHHHHHHHHHcCC
Confidence 97764 665 5677799988764
No 37
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=99.92 E-value=7.9e-24 Score=189.59 Aligned_cols=273 Identities=21% Similarity=0.243 Sum_probs=204.7
Q ss_pred EEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHH-HHhHHHcCCCCCCHHH
Q 015161 50 RAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKAS-EACEVLKESPAMALGS 128 (412)
Q Consensus 50 ~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~-~~~~~l~g~~~~~~~~ 128 (412)
+.++|.+.+|+..-+-.-...+.+|+.++|++. +++..||||..|.|+|+.|+.+.+-.... .+-..+.|..+.+
T Consensus 3 sa~lYry~iPmdsgviLR~r~Lk~RdGl~V~l~-~~~r~gwGEIaPLPgFSqETleqAq~~a~~wl~~W~~g~~~~d--- 78 (321)
T COG1441 3 SAQLYRYQIPMDAGVILRDRRLKTRDGLYVCLR-EGEREGWGEIAPLPGFSQETLEQAQEQALAWLNNWLAGHDPLD--- 78 (321)
T ss_pred ccceEEEecccccceeeehhhhcccccEEEEEe-eCCcccccccCCCCCcCHHHHHHHHHHHHHHHHHHHccCCccc---
Confidence 567899999999887777788889999999998 57899999999999999998776544332 2333444432221
Q ss_pred HHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCCCeeeeceeecC--CCHHHHHHHHHHHHHcCCC
Q 015161 129 VFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGGVSNTITTDITIPI--VSPAEAAELASKYRKQGFT 206 (412)
Q Consensus 129 ~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~--~~~~~~~~~~~~~~~~Gf~ 206 (412)
+.+++ +..++.||+-.+.+-.-. .|. |...|+ .+|+++......+ .|-+
T Consensus 79 -----------~~~PS---VAFGlScA~aEl~~~Lp~-------~~n------Y~~APLC~GDPDeL~~~L~~m--pGeK 129 (321)
T COG1441 79 -----------PQMPS---VAFGLSCALAELKGTLPE-------AAN------YRVAPLCTGDPDELYLKLADM--PGEK 129 (321)
T ss_pred -----------ccCch---hHHHHHHHHHHHhhhchh-------hcC------cccccCcCCCHHHHHHHHhcC--Ccce
Confidence 22343 568999999877653211 111 333343 4789886655544 6889
Q ss_pred EEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc-CCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 207 TLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-MGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 207 ~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~-~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
.-|+||| .....|=-.+.-+-++.||..|++|||.+|++..|..|++.... +.-.+.|+||||...+. -+++.
T Consensus 130 vAKvKVGlYEa~RDGmivnllLEaiPDL~LRLDANRaWtp~Ka~~FAkyV~p~~R~RIaFLEEPCkt~ae--Sr~Fa--- 204 (321)
T COG1441 130 VAKVKVGLYEAVRDGMIVNLLLEAIPDLHLRLDANRAWTPLKAQQFAKYVNPDYRSRIAFLEEPCKTRAE--SRAFA--- 204 (321)
T ss_pred eeeeeeeeeeccccchHHHHHHHhCccceeeecccccCChHHHHHHHHhcCHHHHHHHHHHhcccCChHH--HHHHH---
Confidence 9999999 22335555667777889999999999999999999999988742 32233599999986432 33343
Q ss_pred hcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 285 KDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
+.++|.||.|||+... ||..-- ...+..+.+|++-+| +..+.+.++.|+++|+..++++.+||++|+..-+.+|+-
T Consensus 205 -~eTgIAIAWDEs~rea-dF~~e~-e~gv~avVIKPTL~GSl~r~~eli~qAh~lGl~AVISSSiESSLGLtQLARiA~~ 281 (321)
T COG1441 205 -RETGIAIAWDESLREA-DFAFEA-EPGVRAVVIKPTLTGSLQRVRELVQQAHALGLTAVISSSIESSLGLTQLARIAAW 281 (321)
T ss_pred -HhcCeeEeecchhccc-cccccc-CCCceEEEecccchhhHHHHHHHHHHHHhcCceeEeechhhhhcCHHHHHHHHHH
Confidence 3789999999999875 443322 345888999999999 999999999999999999999999999999998888874
No 38
>PF02746 MR_MLE_N: Mandelate racemase / muconate lactonizing enzyme, N-terminal domain; InterPro: IPR013341 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonizing enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the N-terminal region of these proteins.; PDB: 2OX4_F 3T9P_A 2QQ6_A 3CYJ_C 3GY1_A 3S47_B 3RRA_B 3RR1_A 3STP_A 3T8Q_A ....
Probab=99.90 E-value=6.3e-23 Score=172.41 Aligned_cols=115 Identities=30% Similarity=0.498 Sum_probs=98.9
Q ss_pred eEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCccCcccHHHHHHHHHH-HhHHHcCCCCCCHH
Q 015161 49 QRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHVTAEDQQTAMVKASE-ACEVLKESPAMALG 127 (412)
Q Consensus 49 ~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~~~e~~~~~~~~~~~-~~~~l~g~~~~~~~ 127 (412)
++++++++.+|++ ||++|.++...++.++|||+|++|++||||+.+.+. +.+... ..+++ +.|.++|+++.+++
T Consensus 2 ~ev~v~~v~~~l~-Pf~~a~~t~~~~~~v~V~l~t~~G~~G~Ge~~~~~~-~~~~~~---~~~~~~l~~~l~g~~~~~~~ 76 (117)
T PF02746_consen 2 IEVRVRHVPLPLK-PFKTARGTVSEREFVLVRLETDDGVVGWGEAFPSPG-TAETVA---SALEDYLAPLLIGQDPDDIE 76 (117)
T ss_dssp EEEEEEEEEEEEE-EEEETTEEEEEEEEEEEEEEETTSEEEEEEEESSSS-SHHHHH---HHHHHTHHHHHTTSBTTGHH
T ss_pred EEEEEEEeccCcC-CEEeeCEEEEEeEEEEEEEEECCCCEEEEEeeCCcc-hhHHHH---HHHHHHHHHHHhcCCHHHHH
Confidence 5788899999999 999999999999999999999999999999998654 333333 33343 88999999999999
Q ss_pred HHHHHHHhhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhC
Q 015161 128 SVFGVVAGLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFG 173 (412)
Q Consensus 128 ~~~~~l~~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLG 173 (412)
.+++.+++...++ ..|++||||||||++||.+|+|||+|||
T Consensus 77 ~~~~~~~~~~~~~-----~~a~aaid~AlwDl~gK~~g~Pl~~LlG 117 (117)
T PF02746_consen 77 DIWQELYRLIKGN-----PAAKAAIDMALWDLLGKIAGQPLYQLLG 117 (117)
T ss_dssp HHHHHHHHHTSSH-----HHHHHHHHHHHHHHHHHHHTSBHHHHTT
T ss_pred HHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHcCCCHHHHcC
Confidence 9999988765542 3589999999999999999999999998
No 39
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=99.87 E-value=3e-22 Score=166.64 Aligned_cols=106 Identities=25% Similarity=0.390 Sum_probs=96.4
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCCCceeccc
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFIDLD 373 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e~~ 373 (412)
||++++.++++++++.+++|++|+|++++| ++++++++++|+++|+++++|++ +++++.++++|++++++++.++|+
T Consensus 1 gE~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~i~~aa~~hlaaa~~~~~~~e~- 78 (111)
T PF13378_consen 1 GESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESGIGLAASLHLAAALPNCDWLEY- 78 (111)
T ss_dssp STTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSHHHHHHHHHHHHTSTTBSEEEE-
T ss_pred CCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCcHHHHHHHHHHHhcCCCCcccc-
Confidence 799999999999999999999999999997 99999999999999999999999 999999999999999999999888
Q ss_pred CCcccccCCCCC---ceeeeCcEEeeCC-CCCcccc
Q 015161 374 TPLLLSEDPVLD---GYEVSGAVYKFTN-ARGHGGF 405 (412)
Q Consensus 374 ~p~~~~~d~~~~---~~~~~~G~~~~p~-~pGlG~~ 405 (412)
|+.. +|++.+ ++. +||++.+|+ +||||+|
T Consensus 79 -~~~~-~dl~~~~~~p~~-~~G~v~vp~~~PGlGve 111 (111)
T PF13378_consen 79 -PYFE-EDLVTGPPEPLV-ENGRVTVPDDGPGLGVE 111 (111)
T ss_dssp -GGGT-HHSBSSSSSSEE-ETTEEEGGSSSSBTSBE
T ss_pred -cchh-hhhcCCCCCcee-ECCEEECCCCCCcccCC
Confidence 5433 566653 456 999999999 9999986
No 40
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=8.1e-20 Score=176.35 Aligned_cols=301 Identities=22% Similarity=0.294 Sum_probs=207.6
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCc---------------cCcccHHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPH---------------VTAEDQQTAMVKA 111 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~---------------~~~e~~~~~~~~~ 111 (412)
.|++|..+.+- .|+| .+++-|+|+|++|..|++-++...+ |.+-.+..++..+
T Consensus 3 ~I~~i~aReIl--------DSRG----npTVEveV~~~~g~~g~a~vPSGAStG~~EavElrdgd~ry~gkGV~~AV~nV 70 (423)
T COG0148 3 AIEDVIAREIL--------DSRG----NPTVEVEVTLEDGFGGRAAVPSGASTGEHEAVELRDGDSRYLGKGVLKAVANV 70 (423)
T ss_pred ccceeEEEEEE--------cCCC----CceEEEEEEEcCCCcceeecCCCCCCCCceeEEecCCccccccccHHHHHHHH
Confidence 67777777763 4444 3789999999999999886554221 2222456677777
Q ss_pred HH-HhHHHcCCCCCCHHHHHHHHHhhcCCCcchh-hhHHHHHHHHHHHHHHHhhCCCcHHHHhCCCC-C--eeeeceeec
Q 015161 112 SE-ACEVLKESPAMALGSVFGVVAGLLPGHQFAS-QLKVRAAVEMALIDAVAKSVSMPLWRLFGGVS-N--TITTDITIP 186 (412)
Q Consensus 112 ~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~-~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~~-~--~i~~~~~i~ 186 (412)
++ ++|.|+|.++.+...+.+.|...-....+.. ..+++-||.||+--+.|..+|+|||++|||.. . ++|....+.
T Consensus 71 n~~Iap~LiG~da~dQ~~ID~~lielDGT~Nks~lGaNailgVSlAvAkAAA~~l~~PLy~YlGG~~a~~lPvPm~Nvin 150 (423)
T COG0148 71 NEIIAPALIGLDATDQALIDSLLIELDGTENKSKLGANAILGVSLAVAKAAAASLGIPLYRYLGGLNALVLPVPMMNVIN 150 (423)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHccCCCcccccccHHHHHHHHHHHHHHHHhcCCcHHHHhcCccccccccceeeeec
Confidence 64 7999999999999888887766421111100 12688999999999999999999999999974 3 344332221
Q ss_pred C--------------------CCHHHHHHHH--------HHHHHcCCCEEeEecC---CChhHH---HHH-HHHHHHhC-
Q 015161 187 I--------------------VSPAEAAELA--------SKYRKQGFTTLKLKVG---KNLKED---IEV-LRAIRAVH- 230 (412)
Q Consensus 187 ~--------------------~~~~~~~~~~--------~~~~~~Gf~~~KiKvG---~~~~~D---~~~-v~avr~~~- 230 (412)
. .+..+..+.. .-+.++|..+-+=.-| ++++.+ ++. ++++.+++
T Consensus 151 GG~HA~n~~d~QEFmI~p~ga~sf~ealr~~~ev~h~lk~~l~~~g~~t~vGDEGgfAP~l~~~eeald~i~~Aie~agy 230 (423)
T COG0148 151 GGAHADNNLDIQEFMIMPVGAESFKEALRAGAEVFHHLKKLLKEKGLSTGVGDEGGFAPNLKSNEEALDILVEAIEEAGY 230 (423)
T ss_pred ccccCCCCccceeEEEeecChHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCcccCCCCCccHHHHHHHHHHHHHhCC
Confidence 0 0111211111 1122234333311111 344433 333 46666764
Q ss_pred -C--CcEEEEeCCC--------------CCCHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 231 -P--DSSFILDANE--------------GYKPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 231 -~--~~~l~vDaN~--------------~~~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
+ ++.+.+|+.. .++.+|-+.++..| ++|++ ..||+|+.++||+++++|++.+. ..+.|
T Consensus 231 ~~g~~i~~alD~Aasefy~~~~Y~~~~~~~~~~e~i~~~~~Lv~~Ypi--vsiEDpl~E~Dweg~~~lt~~~g--~kvqi 306 (423)
T COG0148 231 EPGEDIALALDVAASEFYKDGKYVLEGESLTSEELIEYYLELVKKYPI--VSIEDPLSEDDWEGFAELTKRLG--DKVQI 306 (423)
T ss_pred CCCcceeeeehhhhhhhccCCeeeecCcccCHHHHHHHHHHHHHhCCE--EEEcCCCCchhHHHHHHHHHhhC--CeEEE
Confidence 2 4888899642 34566777776664 78885 59999999999999999997432 23778
Q ss_pred EeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCC
Q 015161 293 AADE-SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 293 a~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~ 365 (412)
++|. -+++++.+++-++.++++.+.+|++++| +|++++.+.+|+.+|+.+++++.. ||.- ...+|||.|+.
T Consensus 307 vGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt~~ai~~A~~~gy~~viSHRSGETeD--~tIAdLAVa~~ 380 (423)
T COG0148 307 VGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTETLEAINLAKDAGYTAVISHRSGETED--TTIADLAVATN 380 (423)
T ss_pred ECCcceecCHHHHHHHHHhccCceEEEechhcccHHHHHHHHHHHHHCCCeEEEecCCCCccc--chHHHHHHHhC
Confidence 8876 4778999999999999999999999999 999999999999999999998853 5543 34567777664
No 41
>PRK08350 hypothetical protein; Provisional
Probab=99.87 E-value=3.3e-20 Score=177.60 Aligned_cols=284 Identities=14% Similarity=0.175 Sum_probs=201.3
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC---ccCcccHHHHHHHHHH-HhHHHcCCC
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP---HVTAEDQQTAMVKASE-ACEVLKESP 122 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~---~~~~e~~~~~~~~~~~-~~~~l~g~~ 122 (412)
+|++|..+.+- +|+| .+++-|+|+|++| .|.+.++... .|. -.+..++..+++ ++|.|+|++
T Consensus 3 ~I~~i~aReIl--------DSRG----nPTVEveV~~~~g-~gra~vPSD~d~~ry~-~gV~~AV~nVn~~Iap~LiG~d 68 (341)
T PRK08350 3 VIENIIGRVAV--------LRGG----KYSVEVDVITDSG-FGRFAAPIDENPSLYI-AEAHRAVSEVDEIIGPELIGFD 68 (341)
T ss_pred eeEEEEEEEEE--------cCCC----CceEEEEEEECCc-EEEEEecCCCCccccc-chHHHHHHHHHHHHHHHHcCCC
Confidence 78999888863 4555 4789999999999 8887776521 233 346667777764 899999999
Q ss_pred CCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC-CCeeee--ceeecCC------CHHH
Q 015161 123 AMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV-SNTITT--DITIPIV------SPAE 192 (412)
Q Consensus 123 ~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~-~~~i~~--~~~i~~~------~~~~ 192 (412)
+.+...+.+.|-..-...... ...+|+-|+.||+.-+.|+..|+|||++|||. ...+|+ .-.+... -|.+
T Consensus 69 ~~dQ~~ID~~mielDGT~nKs~lGaNAiLavS~A~akAaA~~~~~PLy~ylgg~~~~~lPvP~~NiiNGG~~EFmI~p~e 148 (341)
T PRK08350 69 ASEQELIDSYLWEIDGTEDFSHIGANTALAVSVAVAKAAANSKNMPLYSYIGGTFTTELPVPILEFAEDENFEYYVLVRD 148 (341)
T ss_pred HHHHHHHHHHHHhccCCccccccCchhhHHHHHHHHHHHHHHcCCcHHHHhcCCCCCccCccceeeecCCceEEEECchH
Confidence 999988888876532111110 01268899999999999999999999999884 334443 3223222 2322
Q ss_pred HHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec
Q 015161 193 AAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVHP----DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ 267 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe 267 (412)
..+- .+-|+.+|--+-.+.++-++.+ +++.++|. ++.+.+|+...++.+|-+ +.+++|++ .+||
T Consensus 149 a~~~-----~ev~~~lk~il~~~~eeaL~ll~eAi~~aGy~~g~dv~~~lD~~~~~t~~eli---~l~~kYPI--vsIE- 217 (341)
T PRK08350 149 LMEI-----TDVVDAVNKILENSKEVSLEGLSKASEKAGDELGLEVALGIAQKREMETEKVL---NLVEDNNI--AYIK- 217 (341)
T ss_pred hhhh-----HHHHHHHHHHHhhChHHHHHHHHHHHHHhCCCccccEEEeeccCCCCCHHHHH---HHHHHCCE--EEEE-
Confidence 2221 2234444421112445556654 77777752 588999997558888866 77889987 6999
Q ss_pred CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
|+..+ ++++++++. ...+.|.+|.-..|-... +.++++.+.+|++++| +|++++.+.+|+++|+.+++|+
T Consensus 218 p~~E~--~gw~~lt~~---g~~iqiVGDDLfvTN~~~----~~~~~NaiLiK~NQIGTltEt~~ai~~A~~~g~~~vvSH 288 (341)
T PRK08350 218 PIGDE--ELFLELIAG---THGVFIDGEYLFRTRNIL----DRRYYNALSIKPINLGTLTDLYNLVNDVKSERITPILAE 288 (341)
T ss_pred cCCcc--hHHHHHHhc---CCceEEEcccccccChhH----hhCccceEEEeeccceeHHHHHHHHHHHHHcCCeEEeec
Confidence 99865 999999963 245888888765444322 7899999999999999 9999999999999999999987
Q ss_pred Cc-chHHHHHHHHHHHccCCC
Q 015161 347 MV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 347 ~~-es~i~~~a~~hlaaa~~~ 366 (412)
.. ||.- .+.+|||.|++.
T Consensus 289 RSGETeD--~~IAdLaVa~~a 307 (341)
T PRK08350 289 AKYESAD--EALPHLAVGLRC 307 (341)
T ss_pred CCCCCcc--hhHHHHHHHhCC
Confidence 64 5543 456777777653
No 42
>PTZ00378 hypothetical protein; Provisional
Probab=99.79 E-value=2.2e-16 Score=159.26 Aligned_cols=298 Identities=17% Similarity=0.171 Sum_probs=200.3
Q ss_pred eeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcE-----EEEEeccCC------cc-CcccHHHHHHHH
Q 015161 44 FTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV-----GWGEAPVLP------HV-TAEDQQTAMVKA 111 (412)
Q Consensus 44 ~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~-----G~GE~~~~~------~~-~~e~~~~~~~~~ 111 (412)
..+.|++|..+.+- .|.| .+++-|+|+|++|.. -.||+.... ++ .+..+..++.
T Consensus 47 ~~~~I~~i~areIl--------DSrG----nPTVev~v~l~~G~~vPSGAStGEA~elRDgd~~~~~g~gkgV~~Av~-- 112 (518)
T PTZ00378 47 SGDEIRALVHNEVL--------SPAG----ETVLRFTLELLNGMEVSSGALLSPSHGERDGEADATLDPAEYTTEALQ-- 112 (518)
T ss_pred CCCeeeEEEEEEEE--------cCCC----CeeEEEEEEECCCCEECCCCcccceeeeecCCcccccCCCccHHHHHH--
Confidence 34579999988873 4444 378889999999843 112443221 12 2234444444
Q ss_pred HHHhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHhCCC--------CCeeeec
Q 015161 112 SEACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLFGGV--------SNTITTD 182 (412)
Q Consensus 112 ~~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg~--------~~~i~~~ 182 (412)
+.+.|.|+|+++.+...+.+.|.+........ ...+++-|+.||+.-+.|+..++|||++|++. ...+|+.
T Consensus 113 ~~i~p~Lig~~~~dQ~~iD~~Li~lDGT~nks~lGaNailavS~A~akAAA~~~~~PLy~yL~~~~~~~~~~~~~~lP~P 192 (518)
T PTZ00378 113 NSYFPRLLQLGARDQREFDSTLRAALSTSPLANVGSAVQWALSIVASLAAARCRSVPLFQYLRALFGSLTSVETFSMPQL 192 (518)
T ss_pred hhhHHHHcCCChHhHHHHHHHHHHhcCCCcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHhhccccccccCCCcccCcc
Confidence 46899999999999888887776543211111 02368999999999999999999999999873 1234432
Q ss_pred e--------------------eecC----CCHHHHHHHHHHH---HHcCCCEEeEecC-------C---ChhHHHHHH-H
Q 015161 183 I--------------------TIPI----VSPAEAAELASKY---RKQGFTTLKLKVG-------K---NLKEDIEVL-R 224 (412)
Q Consensus 183 ~--------------------~i~~----~~~~~~~~~~~~~---~~~Gf~~~KiKvG-------~---~~~~D~~~v-~ 224 (412)
. .+|. .+..+..+...+. ..+|+. .-+| + +.++-++.+ +
T Consensus 193 ~~NiinGG~HA~n~l~iQEFmI~P~ga~g~s~~ealr~~~evyh~L~~~~~---t~vGDEGGfaap~~~~~eeAL~li~e 269 (518)
T PTZ00378 193 CITFFGPGNPSTARLALKSVLFSPVMPSGTVLRERMQKIFAAFHHFCQSHN---SSVRSDGSLHWDGFANLTDAVKLATE 269 (518)
T ss_pred ceEeecCccCCCCCCCceEEEEeeCCCCCCCHHHHHHHHHHHHHHHhhccc---CccCCCcCcCCCCCCCHHHHHHHHHH
Confidence 1 1122 2233322222111 111221 1222 1 233445543 6
Q ss_pred HHHHhC--C--CcEEEEeCC--CC--------------------------------CCHHHHHHHHHH-HHcCC--CCCc
Q 015161 225 AIRAVH--P--DSSFILDAN--EG--------------------------------YKPQEAVEVLEK-LYEMG--VTPV 263 (412)
Q Consensus 225 avr~~~--~--~~~l~vDaN--~~--------------------------------~~~~~A~~~~~~-l~~~~--l~~~ 263 (412)
+++++| | ++.|.+|+. +. .|.+|-+++.+. +++|+ + .
T Consensus 270 Ai~~aGy~pG~dI~iglD~AASef~~~~~~~~~~~~y~~~k~~~e~~Y~l~~~~~~~t~~elieyy~~li~kYP~iI--v 347 (518)
T PTZ00378 270 ALRAVQLTPGTDVCLGLRMAASTTRVPATAVADGGAWKEAKDDCEVLYSLFPGEPDVTGDQLSEYVREQLQAVPDIV--V 347 (518)
T ss_pred HHHHhCCCCCCeEEEEEecccccccccccccccchhhccccCCCceeeeecCCCCCCCHHHHHHHHHHHHHHCCCce--E
Confidence 667764 2 477777742 11 346777887766 57887 5 5
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-CC-CHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-CR-SLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-~~-~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
+||+|+..+||+++++|++.+. ..+.|.+|.- ++ ++..+++.++.++++.+.+|++++| ++++++.+.+|+++|.
T Consensus 348 sIEDp~~E~D~~gw~~lt~~lG--~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlSEtieav~lA~~~g~ 425 (518)
T PTZ00378 348 YVEDTHCDEDTFGLQRLQAALG--DSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLSDVVEIVRAVGEDEG 425 (518)
T ss_pred EEecCCCchHHHHHHHHHHHhC--CeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHHHHHHHHHHHHHcCC
Confidence 8999999999999999997542 2478888864 55 5899999999999999999999999 9999999999999999
Q ss_pred cEE---EccCcchHHHHHHHHHHHccCC
Q 015161 341 NLM---IGGMVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 341 ~~~---~~~~~es~i~~~a~~hlaaa~~ 365 (412)
.++ +++..+ .-.+.+|||.|++
T Consensus 426 ~~v~v~vShRSG---eD~~IAdLAVa~g 450 (518)
T PTZ00378 426 RAVTVLVQTLAG---NAATAAHLAVAMG 450 (518)
T ss_pred cEEccccCCCcC---CccHHHHHHHHcC
Confidence 998 766532 4567888888775
No 43
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=99.67 E-value=9.8e-15 Score=137.21 Aligned_cols=282 Identities=18% Similarity=0.294 Sum_probs=188.1
Q ss_pred eeEEEEEEEECCCcE----------EEEEeccC-----CccCcccHHHHHHHHHH-HhHHHcCC--CCCCHHHHHHHHHh
Q 015161 74 VENVAIRIELSNGCV----------GWGEAPVL-----PHVTAEDQQTAMVKASE-ACEVLKES--PAMALGSVFGVVAG 135 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~----------G~GE~~~~-----~~~~~e~~~~~~~~~~~-~~~~l~g~--~~~~~~~~~~~l~~ 135 (412)
.++|.|.++|+.|+. |.=|+-.+ ..|.+-.+..++..+.+ +.|.++++ ++.+...+.+.|..
T Consensus 17 nPTVEVdL~T~~G~fRaavPSGAStGi~EAlELrDgdK~~y~GkgV~kaV~niN~~i~pali~~~~dv~~Q~~iD~~mi~ 96 (433)
T KOG2670|consen 17 NPTVEVDLTTEKGVFRAAVPSGASTGIYEALELRDGDKSKYMGKGVLKAVGNINNTIAPALIKKNLDVTDQKAIDNFMIE 96 (433)
T ss_pred CCceeEEEEecCcceEeecCCCCccchhhhhheecCCcceecchhHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHHHh
Confidence 478999999998843 22222111 11334456677777754 78999987 66777777777765
Q ss_pred hcCC---CcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHhCC---CCC----eeeeceeecCC--------------CH-
Q 015161 136 LLPG---HQFASQLKVRAAVEMALIDAVAKSVSMPLWRLFGG---VSN----TITTDITIPIV--------------SP- 190 (412)
Q Consensus 136 ~~~g---~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LLGg---~~~----~i~~~~~i~~~--------------~~- 190 (412)
+-.. ..+. .+|+-||.+|+..+-|-..|+|||+.+.+ ..+ +||.+..+... -|
T Consensus 97 LDGTeNKsklG--aNaIlgvSlavckagAa~k~vplykhia~lag~~~~~vlPVPaFNVlNGGsHAGn~lAmQEfMIlP~ 174 (433)
T KOG2670|consen 97 LDGTENKSKLG--ANAILGVSLAVCKAGAAEKGVPLYKHIADLAGNKQPYVLPVPAFNVLNGGSHAGNKLAMQEFMILPV 174 (433)
T ss_pred ccCCccccccc--chhhHHHHHHHHhhhhhhcCCcHHHHHHHhcCCCCceEecccceeeecCCccccchhhhhhheeccc
Confidence 3211 1121 26899999999999999999999998753 332 23333222110 01
Q ss_pred -HHHHHHHHHHHHcCCCEEe-----------EecC------CChh---HHHHHH-HHHHHhC--CCcEEEEeCCC-----
Q 015161 191 -AEAAELASKYRKQGFTTLK-----------LKVG------KNLK---EDIEVL-RAIRAVH--PDSSFILDANE----- 241 (412)
Q Consensus 191 -~~~~~~~~~~~~~Gf~~~K-----------iKvG------~~~~---~D~~~v-~avr~~~--~~~~l~vDaN~----- 241 (412)
.+-.+++.++=.+-|.++| ..|| +++. +-++.+ +++++++ .++.|-+|...
T Consensus 175 ga~sf~eamr~GsevYh~LK~vik~kyG~~a~nVGDEGGfAPnI~~~~E~L~Li~~Ai~kagyt~kikIgmDvAaseF~~ 254 (433)
T KOG2670|consen 175 GADSFAEAMRMGSEVYHHLKSVIKEKYGADATNVGDEGGFAPNIQTNEEALDLIKEAINKAGYTGKVKIGMDVAASEFYK 254 (433)
T ss_pred CchhHHHHHHHhHHHHHHHHHHHHHHhCccccccccccCcCCCccchHHHHHHHHHHHHhcCCCCceEEEEeechhhhhc
Confidence 0112222222222254444 2233 3343 344443 5666665 36888888542
Q ss_pred -----------------CCCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHH
Q 015161 242 -----------------GYKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLD 302 (412)
Q Consensus 242 -----------------~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~ 302 (412)
.++.++...+.+. +.+|++ +-||+|+..|||+.+.++.. ..++.|.+|. .+++++
T Consensus 255 dgkYDLdfk~~~~d~s~~~s~~~L~dlY~~~~k~yPi--vSiEDPFdqdDw~~w~~~~~----~~~iqiVgDDLtvTnpk 328 (433)
T KOG2670|consen 255 DGKYDLDFKSPNSDPSRWLSGDQLADLYKSFIKDYPI--VSIEDPFDQDDWEAWSKFFK----EVGIQIVGDDLTVTNPK 328 (433)
T ss_pred CCcccccCcCCCCCcccccCHHHHHHHHHHHHhcCCe--eeecCCcchhhHHHHHHHhh----ccceEEecCcccccCHH
Confidence 1356666555544 678886 59999999999999999864 4789998876 688999
Q ss_pred HHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCC
Q 015161 303 DVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 303 ~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~ 365 (412)
.++++++..+|+.+.+|++++| +|++++.+.+|++.|..+|+++.. ||.- .+.++|..++.
T Consensus 329 ri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~~a~~~gwgvmvSHRSGETeD--tFIaDL~VGl~ 391 (433)
T KOG2670|consen 329 RIATAIEEKACNALLLKVNQIGTVTESIEAAKLARSAGWGVMVSHRSGETED--TFIADLVVGLG 391 (433)
T ss_pred HHHHHHHHhhccceEeeccccccHHHHHHHHHHHHhcCceEEEeccCCCccc--chHHHhhhhhc
Confidence 9999999999999999999999 999999999999999999998763 5543 34556655543
No 44
>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5.1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....
Probab=99.66 E-value=3.3e-16 Score=118.20 Aligned_cols=66 Identities=32% Similarity=0.582 Sum_probs=60.8
Q ss_pred HHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC
Q 015161 222 VLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 222 ~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 295 (412)
||+++|++ ||++.|++|+|++||.++|+++++.|+++ .|||||++++|++++++|++ ++++||++|
T Consensus 1 ri~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~----~~iEeP~~~~d~~~~~~l~~----~~~~pia~d 67 (67)
T PF01188_consen 1 RIRAVREAVGPDIDLMVDANQAWTLEEAIRLARALEDY----EWIEEPLPPDDLDGLAELRQ----QTSVPIAAD 67 (67)
T ss_dssp HHHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGGG----SEEESSSSTTSHHHHHHHHH----HCSSEEEES
T ss_pred CHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcChh----heeecCCCCCCHHHHHHHHH----hCCCCEEeC
Confidence 68999998 99999999999999999999999999995 39999999999999999985 689999987
No 45
>COG3799 Mal Methylaspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=99.56 E-value=2.3e-13 Score=126.59 Aligned_cols=287 Identities=17% Similarity=0.216 Sum_probs=190.4
Q ss_pred eeEEEEEEEECCCcEEEEEeccCCc--cCccc----HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHHhhcCCCcchhhh
Q 015161 74 VENVAIRIELSNGCVGWGEAPVLPH--VTAED----QQTAMVKAS-EACEVLKESPAMALGSVFGVVAGLLPGHQFASQL 146 (412)
Q Consensus 74 ~~~~lV~v~t~~G~~G~GE~~~~~~--~~~e~----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~~~~ 146 (412)
.+.+.|.+..++|..=||.+...-+ -.+.+ .+..+..++ .+.|+|+|+|....-+.......+..++.. +.
T Consensus 50 ge~lsv~lvLsdg~vv~GdcaaVQYSGAGgRDpLF~a~~~~~~~~~~v~p~LvgrDv~~~ldnA~vfe~l~d~~~L--ht 127 (410)
T COG3799 50 GECLSVQLVLSDGAVVVGDCAAVQYSGAGGRDPLFLAEHFIPFLNDHVKPLLVGRDVDAFLDNARVFEKLIDGNLL--HT 127 (410)
T ss_pred cceeeEEEEEecCceeeccceeeEecCCCCCCchhhhhhhHHHHhhhhhhhhhCccHHhhcchhHHhHhhccCCcc--hH
Confidence 4678888889999999999875321 11111 111222333 378999999876543332222222333433 35
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHhCCC------CCeeeeceeecCC---CHHHHHHHH---------HHHHHcCCCEE
Q 015161 147 KVRAAVEMALIDAVAKSVSMPLWRLFGGV------SNTITTDITIPIV---SPAEAAELA---------SKYRKQGFTTL 208 (412)
Q Consensus 147 ~a~saId~Al~Dl~gk~~g~Pl~~LLGg~------~~~i~~~~~i~~~---~~~~~~~~~---------~~~~~~Gf~~~ 208 (412)
+.+.++..||.|+.+-+.+.--.+.+... ..++|++...+.. ..+.+.-.. ....+-||...
T Consensus 128 AvrYGvSQALl~Aaa~a~~tt~tevvcde~~lp~~te~vP~fgQSGd~R~~~vdkMiLK~vdVLPHgLiNsve~~G~dG~ 207 (410)
T COG3799 128 AVRYGVSQALLDAAALATGTTKTEVVCDEWQLPRVTESVPLFGQSGDDRYIAVDKMILKGVDVLPHGLINSVEELGFDGE 207 (410)
T ss_pred HHHhhHHHHHHHHHHHhhccchheeehhhhCCCCccccccccccCcchhhhhHHHHHHhhcCccchhhhhhHHHhCCchH
Confidence 68999999999999888776655554322 2356665433221 111111111 11112233333
Q ss_pred eEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CCCHHHHHHHHHHHHcC--CCCCceeecCCCC----CCHHH
Q 015161 209 KLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKPQEAVEVLEKLYEM--GVTPVLFEQPVHR----DDWEG 276 (412)
Q Consensus 209 KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~------~~~~~~A~~~~~~l~~~--~l~~~~iEeP~~~----~d~~~ 276 (412)
|+.- -++|-.+|...++.-+..-.|-+|..+ ++++.....|+.+|++. ++ |.+||-|... .+++.
T Consensus 208 ~l~E--yv~Wls~R~~~~g~~gYhP~lH~DVYG~iGe~fg~dp~r~a~yi~~l~~~a~~~-pL~IEgP~DaGs~~aQI~~ 284 (410)
T COG3799 208 KLRE--YVRWLSDRILSKGTSGYHPTLHIDVYGTIGEIFGMDPLRCAQYIASLEKEAQGL-PLYIEGPVDAGSKPAQIRL 284 (410)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCCccEEEeehhhhHHHhCCCHHHHHHHHHHHHhhCCCC-ceeeeccccCCCCHHHHHH
Confidence 3221 123444444444333445678899886 46777777888888752 43 4699999984 45777
Q ss_pred HHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc-CcchHHH
Q 015161 277 LGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG-MVETRLA 353 (412)
Q Consensus 277 ~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~-~~es~i~ 353 (412)
|+++++.+. ..+++.|..||.|.+.+|+..+.++++++.+|+|..-+| |.+..+...+|+.+.+..+.|+ +.||.++
T Consensus 285 ~a~i~~~L~~~Gs~v~IVaDEwCnt~~Di~~F~dA~a~h~VQiKTPDvGsi~~~~rAvlyC~~~~~~AYvGGtCnETdvS 364 (410)
T COG3799 285 LAAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAAACHMVQIKTPDVGSIHNIVRAVLYCNSHSMEAYVGGTCNETDVS 364 (410)
T ss_pred HHHHHHHHhhcCCcceEeehhhcccHHHHHHHHhhccccEEEecCCCcchHHHHHHHHhhhccCccceeecccccccchh
Confidence 888777654 356799999999999999999999999999999999999 9999999999999999998876 5799999
Q ss_pred HHHHHHHHccCC
Q 015161 354 MGFAGHLSAGLG 365 (412)
Q Consensus 354 ~~a~~hlaaa~~ 365 (412)
...++|++.+..
T Consensus 365 Ar~cvHValAt~ 376 (410)
T COG3799 365 ARTCVHVALATR 376 (410)
T ss_pred hhhhhhhhhhhc
Confidence 999999987653
No 46
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=99.36 E-value=1.3e-11 Score=111.12 Aligned_cols=161 Identities=19% Similarity=0.357 Sum_probs=108.5
Q ss_pred cC-CCEEeEecCCChhHHHHHHHHHH----HhC---CCcEEEEeCCCCC------CHHHHHHHHHHHHc--CCCCCceee
Q 015161 203 QG-FTTLKLKVGKNLKEDIEVLRAIR----AVH---PDSSFILDANEGY------KPQEAVEVLEKLYE--MGVTPVLFE 266 (412)
Q Consensus 203 ~G-f~~~KiKvG~~~~~D~~~v~avr----~~~---~~~~l~vDaN~~~------~~~~A~~~~~~l~~--~~l~~~~iE 266 (412)
+| |..++ |+|.+-+.=.+.++=++ +.+ ..-.|-+|..+.. +++....|+.+|++ .++ ...||
T Consensus 33 H~linnve-klG~~Ge~L~eYv~Wl~~Ri~~lg~~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~P~-~L~iE 110 (248)
T PF07476_consen 33 HALINNVE-KLGPDGEKLLEYVKWLKDRIRELGDEDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAAPF-KLRIE 110 (248)
T ss_dssp ETT---CC-CC-TTSHHHHHHHHHHHHHHHHHSSTT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHTTS--EEEE
T ss_pred hHhhhCHH-HhCcchHHHHHHHHHHHHHHHHhcCCCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcCCC-eeeee
Confidence 44 77788 99965444444333222 222 3457889998743 56777788888865 233 25999
Q ss_pred cCCCCCC----HHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCC
Q 015161 267 QPVHRDD----WEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGL 340 (412)
Q Consensus 267 eP~~~~d----~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi 340 (412)
.|+...+ ++.+++|++.+++ .+++.|.+||.|.+++|++.+.+++++|.+|+|..-.| +..+.+.+-+|+++|+
T Consensus 111 gP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQIKtPDLGgi~ntieAvlyCk~~gv 190 (248)
T PF07476_consen 111 GPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQIKTPDLGGINNTIEAVLYCKEHGV 190 (248)
T ss_dssp -SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEEE-GGGGSSTHHHHHHHHHHHHTT-
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEEecCCCccchhhHHHHHHHHHhcCC
Confidence 9998654 6778888877663 45689999999999999999999999999999999998 9999999999999999
Q ss_pred cEEEcc-CcchHHHHHHHHHHHccCC
Q 015161 341 NLMIGG-MVETRLAMGFAGHLSAGLG 365 (412)
Q Consensus 341 ~~~~~~-~~es~i~~~a~~hlaaa~~ 365 (412)
..+.|+ +.||..+...++|+|.|..
T Consensus 191 gaY~GGtCNETd~SArv~~hvalAt~ 216 (248)
T PF07476_consen 191 GAYLGGTCNETDRSARVCVHVALATR 216 (248)
T ss_dssp EEEE---TTS-HHHHHHHHHHHHHCT
T ss_pred ceeecccccccchhHHHHHHHHHhcC
Confidence 999877 5799999999999998765
No 47
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=99.26 E-value=5e-11 Score=114.83 Aligned_cols=118 Identities=22% Similarity=0.453 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecC
Q 015161 243 YKPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 243 ~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.+.+|-+.+... +++|++ ..||+|+..+||+++++|++.+.. .+-|.+|. .++++..+++.++.++++.+.+|+
T Consensus 133 ~s~delid~y~~li~~YPI--vsIEDpf~edD~e~w~~lt~~~g~--~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~ 208 (295)
T PF00113_consen 133 KSSDELIDYYKDLIKKYPI--VSIEDPFDEDDWEGWAKLTKRLGD--KIQIVGDDLFVTNPKRIKKGIEKKACNALLLKP 208 (295)
T ss_dssp EEHHHHHHHHHHHHHHS-E--EEEESSS-TT-HHHHHHHHHHHTT--TSEEEESTTTTT-HHHHHHHHHCT--SEEEE-H
T ss_pred cCHHHHHHHHHHHHHhcCe--EEEEccccccchHHHHHHHHhhhc--ceeeecccccccchhhhhccchhhhccchhhhh
Confidence 578888887766 578986 699999999999999999975422 38888887 677899999999999999999999
Q ss_pred CCCc-HHHHHHHHHHHHHcCCcEEEccCc-chHHHHHHHHHHHccCCC
Q 015161 321 AKVG-VLGALEIIEVVRASGLNLMIGGMV-ETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~gi~~~~~~~~-es~i~~~a~~hlaaa~~~ 366 (412)
+++| +|++++++.+|+++|..+++++.. ||. -.+.+|||.|++.
T Consensus 209 NQigTvte~lea~~~a~~~g~~~vvS~rsgEte--D~~iadLaVg~~a 254 (295)
T PF00113_consen 209 NQIGTVTETLEAVKLAKSAGWGVVVSHRSGETE--DTFIADLAVGLGA 254 (295)
T ss_dssp HHHSSHHHHHHHHHHHHHTT-EEEEE--SS--S----HHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHHCCceeeccCCCCCcC--chhHHHHHhccCc
Confidence 9999 999999999999999999998764 543 3567788887764
No 48
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.06 E-value=2.9e-09 Score=105.64 Aligned_cols=121 Identities=23% Similarity=0.385 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC------------ChhHH-------------HHHHHHHHHh-CCCcEEEEeCC-----
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK------------NLKED-------------IEVLRAIRAV-HPDSSFILDAN----- 240 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~------------~~~~D-------------~~~v~avr~~-~~~~~l~vDaN----- 240 (412)
+.++.++++.+.||..++++.+. +.+.| .+.+++||++ ++++.+.+|.|
T Consensus 155 ~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 34667778888999999999752 22333 7899999997 78999999855
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCceee-----------cCC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 241 -EGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~l~~~~iE-----------eP~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
++|+.++++++++.|+++++ .||| .|+ +.++.+.++++++ .+++||++++.+.+++++.++
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gv--d~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~G~i~t~~~a~~~ 308 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGV--DLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQ----EAGIPVIAVGLITDPEQAEAI 308 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEECCCCCCcccccCCCccccHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHH
Confidence 89999999999999999987 4999 466 3445566666664 678999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|++++
T Consensus 309 l~~g~aD~V~~ 319 (336)
T cd02932 309 LESGRADLVAL 319 (336)
T ss_pred HHcCCCCeehh
Confidence 99999999743
No 49
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.05 E-value=7.2e-09 Score=97.07 Aligned_cols=144 Identities=21% Similarity=0.301 Sum_probs=119.1
Q ss_pred HHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCC
Q 015161 169 WRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPD 232 (412)
Q Consensus 169 ~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~ 232 (412)
..+++......|+..++...++++..+.++.+.+.||..+++++|. +++...+.++++|++.+
T Consensus 45 ~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~- 123 (231)
T cd02801 45 LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP- 123 (231)
T ss_pred HHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-
Confidence 3445544567788888888899999998888888899999999873 56667788999998754
Q ss_pred cEEEEeCCCCCCHH-HHHHHHHHHHcCCCCCcee-------ec-CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHH
Q 015161 233 SSFILDANEGYKPQ-EAVEVLEKLYEMGVTPVLF-------EQ-PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDD 303 (412)
Q Consensus 233 ~~l~vDaN~~~~~~-~A~~~~~~l~~~~l~~~~i-------Ee-P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~ 303 (412)
..+.++.|.+|+.+ ++.++++.+++.++. +| ++ +..+.+++..+++++ ..++||.++..+.+.++
T Consensus 124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd--~i~v~~~~~~~~~~~~~~~~~~~~i~~----~~~ipvi~~Ggi~~~~d 197 (231)
T cd02801 124 IPVTVKIRLGWDDEEETLELAKALEDAGAS--ALTVHGRTREQRYSGPADWDYIAEIKE----AVSIPVIANGDIFSLED 197 (231)
T ss_pred CCEEEEEeeccCCchHHHHHHHHHHHhCCC--EEEECCCCHHHcCCCCCCHHHHHHHHh----CCCCeEEEeCCCCCHHH
Confidence 77899999999876 899999999999975 88 76 766678888877764 67899999999999999
Q ss_pred HHHHHHcCCCCEEEec
Q 015161 304 VKKIVKGNLADVINIK 319 (412)
Q Consensus 304 ~~~~i~~~a~d~v~ik 319 (412)
+.++++.+.+|.+++=
T Consensus 198 ~~~~l~~~gad~V~ig 213 (231)
T cd02801 198 ALRCLEQTGVDGVMIG 213 (231)
T ss_pred HHHHHHhcCCCEEEEc
Confidence 9999998778998763
No 50
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.79 E-value=1.7e-07 Score=93.17 Aligned_cols=121 Identities=22% Similarity=0.307 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC---------------------C----hhHHHHHHHHHHHh-CCCcEEEEeCC-----
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK---------------------N----LKEDIEVLRAIRAV-HPDSSFILDAN----- 240 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~---------------------~----~~~D~~~v~avr~~-~~~~~l~vDaN----- 240 (412)
+..+.|+++++.||..+.|..+. + .+-.++.|++||++ ++++.|.+|.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~ 229 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ 229 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC
Confidence 34666778888999999998761 1 23446789999997 78999999998
Q ss_pred -CCCCHHHHHHHHHHHHcCCCCCceee-------cCCCC---C---------CHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 -EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVHR---D---------DWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP~~~---~---------d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
.+|+.++++++++.|++.++. ||| +|... + .++..++++ +.+++||++++.+.+
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd--~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~t 303 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVD--LVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIR----KVTKTPLMVTGGFRT 303 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--EEEecCCCCCCccccccccCCccccchhhHHHHHHHH----HHcCCCEEEeCCCCC
Confidence 589999999999999999974 999 66532 1 023334454 467999999999999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015161 301 LDDVKKIVKGNLADVINI 318 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~i 318 (412)
++++.++++.+.+|++.+
T Consensus 304 ~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 304 RAAMEQALASGAVDGIGL 321 (338)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999999999854
No 51
>PF03952 Enolase_N: Enolase, N-terminal domain; InterPro: IPR020811 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3OTR_F 3QTP_A 1PDY_A 1PDZ_A 3TQP_B 2PTZ_A 2PTW_A ....
Probab=98.70 E-value=6.2e-07 Score=76.50 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=80.5
Q ss_pred EEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCC----------------ccCcccHHHHHHH
Q 015161 47 DVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLP----------------HVTAEDQQTAMVK 110 (412)
Q Consensus 47 kI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~----------------~~~~e~~~~~~~~ 110 (412)
+|++|..+.+- .|.| .+++-|+|++++|..|.+-++... .|.+..+..++..
T Consensus 1 ~I~~v~~r~Il--------DsrG----~PTVEveV~~~~g~~~ra~~PsGaStG~~Ea~elrD~~~~~~~gkgV~~Av~~ 68 (132)
T PF03952_consen 1 TITKVKAREIL--------DSRG----NPTVEVEVFTSNGNVGRASVPSGASTGSHEAVELRDGDPERYGGKGVSKAVEN 68 (132)
T ss_dssp BEEEEEEEEEE---------TTS-----EEEEEEEEETTEEEEEEE--B-SSSSSSS-B---B-STTSGGGTBHHHHHHH
T ss_pred CeEEEEEEEEE--------cCCC----CceEEEEEEECCcccceeccccccCCCccccccccCCCcceecCcccchhhhh
Confidence 57888877763 4555 488999999999999988876532 1233457777877
Q ss_pred HHH-HhHHHcCCCCCCHHHHHHHHHhhcCCCcch-hhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 111 ASE-ACEVLKESPAMALGSVFGVVAGLLPGHQFA-SQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 111 ~~~-~~~~l~g~~~~~~~~~~~~l~~~~~g~~~~-~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
+++ +.|.|+|+++.+...+.+.|...-...... ...++.-|+.+|++-+.|+..|+|||++|
T Consensus 69 vn~~i~~~L~g~~~~dQ~~iD~~L~~lDgT~nk~~lGaNa~lavS~A~a~AaA~~~~~pL~~~l 132 (132)
T PF03952_consen 69 VNEIIAPALIGLDPTDQEEIDQILIELDGTPNKSRLGANAILAVSLAVAKAAAAAKGIPLYRYL 132 (132)
T ss_dssp HHHTHHHHHTTSBTT-HHHHHHHHHHHHTSTTSTTT-HHHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred HHHHHHHHHHhcchhhHHHhCccceeccCChhhhcccchHHHHHHHHHHHHHHHHcCCChhhcC
Confidence 764 899999999999998888776542211110 01268899999999999999999999986
No 52
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.65 E-value=5.8e-07 Score=88.79 Aligned_cols=120 Identities=22% Similarity=0.290 Sum_probs=94.4
Q ss_pred HHHHHHHHHHcCCCEEeEecCC------------Ch-------------hHHHHHHHHHHHh-CCCcEEEEeCC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK------------NL-------------KEDIEVLRAIRAV-HPDSSFILDAN------ 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~------------~~-------------~~D~~~v~avr~~-~~~~~l~vDaN------ 240 (412)
..+.++++.+.||..++|+.+. +. +...+.+++||++ ++++.|.++.|
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 4666778888999999999861 11 2236889999997 78888888877
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceee-------cCCC---------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFE-------QPVH---------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV 304 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iE-------eP~~---------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~ 304 (412)
.+|+.++++++++.|+++++. ||+ +|.. ..+++..+++++ .+++||++.+.+.+.+++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~----~~~iPVi~~Ggi~t~~~a 296 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVD--ALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKK----AVKIPVIAVGGIRDPEVA 296 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCCCCCcchhHHHHHHHHH----HCCCCEEEeCCCCCHHHH
Confidence 458899999999999999974 884 6543 234455555553 578999999999999999
Q ss_pred HHHHHcCCCCEEEe
Q 015161 305 KKIVKGNLADVINI 318 (412)
Q Consensus 305 ~~~i~~~a~d~v~i 318 (412)
.++++.+.+|++.+
T Consensus 297 ~~~l~~g~aD~V~i 310 (327)
T cd02803 297 EEILAEGKADLVAL 310 (327)
T ss_pred HHHHHCCCCCeeee
Confidence 99999988998854
No 53
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.59 E-value=9.2e-07 Score=88.36 Aligned_cols=122 Identities=20% Similarity=0.238 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC----------C-----------C----hhHHHHHHHHHHHh-CCCcEEE-----EeCC-
Q 015161 193 AAELASKYRKQGFTTLKLKVG----------K-----------N----LKEDIEVLRAIRAV-HPDSSFI-----LDAN- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG----------~-----------~----~~~D~~~v~avr~~-~~~~~l~-----vDaN- 240 (412)
..+.|+.+++.||..++++.+ + + .+...+.+++||++ ++++.+. .|.+
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~ 218 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVE 218 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCC
Confidence 456677788899999999863 1 1 34567889999997 6776654 5654
Q ss_pred CCCCHHHHHHHHHHHHcCCCC-----CceeecCCCCCC--------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVT-----PVLFEQPVHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~-----~~~iEeP~~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
++|+.++++++++.|+++++. ..|.|+|++..+ .+..++++ +.+++||+.++.+.+++++.++
T Consensus 219 ~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik----~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 219 GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLK----RAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHH----HhCCCCEEEcCCCCCHHHHHHH
Confidence 668999999999999998842 125688876432 22334454 4689999999999999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.+.+|++++
T Consensus 295 i~~g~~D~V~~ 305 (353)
T cd02930 295 LADGDADMVSM 305 (353)
T ss_pred HHCCCCChhHh
Confidence 99999999754
No 54
>PF05034 MAAL_N: Methylaspartate ammonia-lyase N-terminus; InterPro: IPR022665 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the N-terminal region of methylaspartate ammonia-lyase. This domain is structurally related to PF03952 from PFAM []. This domain is associated with the catalytic domain PF07476 from PFAM. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=97.78 E-value=0.00028 Score=60.67 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=66.9
Q ss_pred ceeccCceeee-eeEEEEEEEECCCcEEEEEeccCC--ccCccc----HHHHHHHHH-HHhHHHcCCCCCCHHHHHHHHH
Q 015161 63 PFTIATSRLDQ-VENVAIRIELSNGCVGWGEAPVLP--HVTAED----QQTAMVKAS-EACEVLKESPAMALGSVFGVVA 134 (412)
Q Consensus 63 pf~~a~~~~~~-~~~~lV~v~t~~G~~G~GE~~~~~--~~~~e~----~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~l~ 134 (412)
|.+.+..++.. -+.+.|-+..+||.+.||.|...- +..+.. ....+..++ .+.|.|+|++..+.....+.+.
T Consensus 38 P~TpGF~sVRq~gesisV~l~L~dG~va~GDCaaVQYSGagGRDPLF~a~~~ip~ie~~v~p~L~g~d~~~Fr~~a~~~d 117 (159)
T PF05034_consen 38 PVTPGFKSVRQAGESISVMLVLEDGQVAYGDCAAVQYSGAGGRDPLFLAEDFIPVIEKEVAPRLVGRDLSSFRENAEKFD 117 (159)
T ss_dssp --STT-SSSEEEEEEEEEEEEETTS-EEEEEE---TTTTSTTS-S---HHHHHHHHHHHTHHHHTT-B-S-CHHHHHHHH
T ss_pred CCCCCchhhhccCcEEEEEEEeCCCCEEEeeehheeecccCCCCCcccHHHHHHHHHhhccHHHcCCcHHHHHHHHHHHH
Confidence 44444444333 578999999999999999998631 111111 122233343 5899999999999988888887
Q ss_pred hhcCCCcchhhhHHHHHHHHHHHHHHHhhCCCcHHHHh
Q 015161 135 GLLPGHQFASQLKVRAAVEMALIDAVAKSVSMPLWRLF 172 (412)
Q Consensus 135 ~~~~g~~~~~~~~a~saId~Al~Dl~gk~~g~Pl~~LL 172 (412)
....|..+ +.+.+.+|..||+|+.|+..+.-..+.+
T Consensus 118 ~~~~g~rl--htAiRYGvsQALL~A~A~a~~~tmaeVi 153 (159)
T PF05034_consen 118 ELVDGKRL--HTAIRYGVSQALLDAAAKAQRTTMAEVI 153 (159)
T ss_dssp H-ETTEE----HHHHHHHHHHHHHHHHHHCTS-HHHHH
T ss_pred hcccCCcc--hhHHHHhHHHHHHHHHHHHcCCcHHHHH
Confidence 76544433 4578999999999999999888766654
No 55
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=97.56 E-value=0.0035 Score=61.52 Aligned_cols=143 Identities=15% Similarity=0.195 Sum_probs=103.3
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC-CCcEEEEeCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH-PDSSFILDAN 240 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~-~~~~l~vDaN 240 (412)
..|+...+...+|+++++.++.+.+.||..+-+.+|. +++.-.+.++++|++. +++.+.+=..
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 3466677777899999998888888999999998872 2334455678888864 4566666655
Q ss_pred CCCC-HHHHHHHHHHHHcCCCCCc-----eeecCCCC--CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 241 EGYK-PQEAVEVLEKLYEMGVTPV-----LFEQPVHR--DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 241 ~~~~-~~~A~~~~~~l~~~~l~~~-----~iEeP~~~--~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
-+|+ .+++.++++.+++.|+... .-+|.... -||+..+++.+ ..++||.+.=.+.+.+++.++++...
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~----~~~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQ----RLTIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHh----hcCCcEEEeCCcCCHHHHHHHHhccC
Confidence 5775 4568899999999876411 12333222 26776777764 57899999889999999999998888
Q ss_pred CCEEEecCCCCc
Q 015161 313 ADVINIKLAKVG 324 (412)
Q Consensus 313 ~d~v~ik~~~~G 324 (412)
+|.+.+=-.-+|
T Consensus 218 ~DgVmiGRg~l~ 229 (312)
T PRK10550 218 CDAVMIGRGALN 229 (312)
T ss_pred CCEEEEcHHhHh
Confidence 999987543333
No 56
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=97.34 E-value=0.0073 Score=59.61 Aligned_cols=138 Identities=17% Similarity=0.256 Sum_probs=98.9
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+...+...+|+++++.++...+.||..+-+.+|. +++.-.+.+++++++. ++.+.+=.+.+|
T Consensus 66 ~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~ 144 (321)
T PRK10415 66 IRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGW 144 (321)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccc
Confidence 44456667789999888887778899999998882 2444455677777754 334444444667
Q ss_pred CH--HHHHHHHHHHHcCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015161 244 KP--QEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 244 ~~--~~A~~~~~~l~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 313 (412)
+. .+++++++.+++.|+. +| +|... ..+|+..+++++ .+++||.+.=.+.+.+++.++++...+
T Consensus 145 ~~~~~~~~~~a~~le~~G~d--~i~vh~rt~~~~~~G~a~~~~i~~ik~----~~~iPVI~nGgI~s~~da~~~l~~~ga 218 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQ--ALTIHGRTRACLFNGEAEYDSIRAVKQ----KVSIPVIANGDITDPLKARAVLDYTGA 218 (321)
T ss_pred cCCcchHHHHHHHHHHhCCC--EEEEecCccccccCCCcChHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHhccCC
Confidence 64 3688999999998874 55 33322 246766777654 678999998899999999999987779
Q ss_pred CEEEecCCCCc
Q 015161 314 DVINIKLAKVG 324 (412)
Q Consensus 314 d~v~ik~~~~G 324 (412)
|.+++=-.-+|
T Consensus 219 dgVmiGR~~l~ 229 (321)
T PRK10415 219 DALMIGRAAQG 229 (321)
T ss_pred CEEEEChHhhc
Confidence 99987544443
No 57
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.014 Score=57.59 Aligned_cols=143 Identities=20% Similarity=0.273 Sum_probs=108.1
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
..|+...+...+|+.+++.++...+.||..|-+.+|. +++.-.+.|++++++.+++.+.|-..-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 3445666777789889999999999999999999882 455556778899988557888888888
Q ss_pred CCCHHH--HHHHHHHHHcCCCCCceeec------CCCCCCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQE--AVEVLEKLYEMGVTPVLFEQ------PVHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~--A~~~~~~l~~~~l~~~~iEe------P~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+|+.++ +.++++.+++.|....++=- =..+-||+..+++++ ..+ +||.+.-.+.+.++.+++++...
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~----~~~~ipvi~NGdI~s~~~a~~~l~~tg 221 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKE----AVPSIPVIANGDIKSLEDAKEMLEYTG 221 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHH----hCCCCeEEeCCCcCCHHHHHHHHHhhC
Confidence 997665 77888888887764222211 111247888888875 445 99999999999999999999888
Q ss_pred CCEEEecCCCCc
Q 015161 313 ADVINIKLAKVG 324 (412)
Q Consensus 313 ~d~v~ik~~~~G 324 (412)
+|.+.+--.-.|
T Consensus 222 ~DgVMigRga~~ 233 (323)
T COG0042 222 ADGVMIGRGALG 233 (323)
T ss_pred CCEEEEcHHHcc
Confidence 999987644444
No 58
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=97.01 E-value=0.049 Score=54.02 Aligned_cols=142 Identities=15% Similarity=0.243 Sum_probs=97.8
Q ss_pred HHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C
Q 015161 170 RLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P 231 (412)
Q Consensus 170 ~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~ 231 (412)
++|.-....-|+...+...+|+++++.++.+.+.||..|-+..|. +++.-.+.++++|++. |
T Consensus 56 ~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p 135 (333)
T PRK11815 56 RLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP 135 (333)
T ss_pred HHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc
Confidence 344333334566777888899999888888888899999988771 3344456778888852 3
Q ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee--------cC--------CCCCCHHHHHHhHHHhhcc-cCCeEE
Q 015161 232 -DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QP--------VHRDDWEGLGHVSHIAKDK-FGVSVA 293 (412)
Q Consensus 232 -~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE--------eP--------~~~~d~~~~~~l~~~~~~~-~~ipIa 293 (412)
.+++++-....-+.++++++++.+++.|+. +|. |- +++-+|+..+++++ . .++||.
T Consensus 136 VsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d--~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~----~~~~iPVI 209 (333)
T PRK11815 136 VTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD--TFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKR----DFPHLTIE 209 (333)
T ss_pred eEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC--EEEEcCCchhhcCCCccccccCCCcCHHHHHHHHH----hCCCCeEE
Confidence 344444322223457788999999998875 442 11 12345777777753 4 379999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 294 ADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 294 ~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.=.+.+++++.++++ + +|.+++=
T Consensus 210 ~nGgI~s~eda~~~l~-~-aDgVmIG 233 (333)
T PRK11815 210 INGGIKTLEEAKEHLQ-H-VDGVMIG 233 (333)
T ss_pred EECCcCCHHHHHHHHh-c-CCEEEEc
Confidence 9888999999999997 3 8888764
No 59
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.93 E-value=0.011 Score=58.06 Aligned_cols=135 Identities=23% Similarity=0.368 Sum_probs=92.6
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC----------------CChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------KNLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------~~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
.-|+...+...+|+.+.+.++...+.||..|-+.+| .+++.-.+.|+++++..+ +.+.+-.--
T Consensus 53 ~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~ 131 (309)
T PF01207_consen 53 ERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRL 131 (309)
T ss_dssp T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEES
T ss_pred ccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEeccc
Confidence 345666777788999888877766679999999988 245555667888888644 666666666
Q ss_pred CCC--HHHHHHHHHHHHcCCCCCcee-------ecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 242 GYK--PQEAVEVLEKLYEMGVTPVLF-------EQPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 242 ~~~--~~~A~~~~~~l~~~~l~~~~i-------EeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
+|+ .++.+++++.+++.|+. +| +|-.. +-||+..+++++ ..++||.+.=.+.+.+|+.++++.-
T Consensus 132 g~~~~~~~~~~~~~~l~~~G~~--~i~vH~Rt~~q~~~~~a~w~~i~~i~~----~~~ipvi~NGdI~s~~d~~~~~~~t 205 (309)
T PF01207_consen 132 GWDDSPEETIEFARILEDAGVS--AITVHGRTRKQRYKGPADWEAIAEIKE----ALPIPVIANGDIFSPEDAERMLEQT 205 (309)
T ss_dssp ECT--CHHHHHHHHHHHHTT----EEEEECS-TTCCCTS---HHHHHHCHH----C-TSEEEEESS--SHHHHHHHCCCH
T ss_pred ccccchhHHHHHHHHhhhcccc--eEEEecCchhhcCCcccchHHHHHHhh----cccceeEEcCccCCHHHHHHHHHhc
Confidence 776 67889999999999874 54 33333 457888888875 6779999999999999999999875
Q ss_pred CCCEEEec
Q 015161 312 LADVINIK 319 (412)
Q Consensus 312 a~d~v~ik 319 (412)
.+|.+.+=
T Consensus 206 g~dgvMig 213 (309)
T PF01207_consen 206 GADGVMIG 213 (309)
T ss_dssp -SSEEEES
T ss_pred CCcEEEEc
Confidence 68988764
No 60
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.92 E-value=0.017 Score=55.91 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=94.4
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-----------NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-----------~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
.|+..++...++++..+.++.+.+.|+..+-+.++. +++.-.+.++++|+.. ++.+.+..+..++.++
T Consensus 99 ~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 99 QPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLED 177 (289)
T ss_pred CeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHH
Confidence 355556666688888888888888899999998771 2223345678888765 6778888888899999
Q ss_pred HHHHHHHHHcCCCCCceeecC---------------CCC-------------CCHHHHHHhHHHhhccc--CCeEEeCCC
Q 015161 248 AVEVLEKLYEMGVTPVLFEQP---------------VHR-------------DDWEGLGHVSHIAKDKF--GVSVAADES 297 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP---------------~~~-------------~d~~~~~~l~~~~~~~~--~ipIa~dEs 297 (412)
..++++.+++.++. +|.=+ ... ..++..++++ +.. ++||.+.=-
T Consensus 178 ~~~~a~~l~~~Gad--~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~----~~~~~~ipiia~GG 251 (289)
T cd02810 178 IVELAKAAERAGAD--GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLA----ARLQLDIPIIGVGG 251 (289)
T ss_pred HHHHHHHHHHcCCC--EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHH----HhcCCCCCEEEECC
Confidence 99999999998864 55521 000 0122233333 345 799999888
Q ss_pred CCCHHHHHHHHHcCCCCEEEe
Q 015161 298 CRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.+.+++.+++..| +|.+++
T Consensus 252 I~~~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 252 IDSGEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred CCCHHHHHHHHHcC-ccHheE
Confidence 99999999999987 787755
No 61
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.89 E-value=0.047 Score=51.21 Aligned_cols=131 Identities=14% Similarity=0.217 Sum_probs=93.2
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++...+++++.+.++.. +.++..|-+-+|. +++.-.+.++++++. ++.+.+=-.-.|
T Consensus 69 ~vivnv~~~~~ee~~~~a~~v-~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~ 145 (231)
T TIGR00736 69 LVSVNVRFVDLEEAYDVLLTI-AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNC 145 (231)
T ss_pred CEEEEEecCCHHHHHHHHHHH-hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCC
Confidence 556677777899987776664 6689999988762 444455567777754 344444444445
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCC---CHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+..+.+++++.+++.|....-+.+=.+.. +|+..+++++ .. .+||.+.=.+.+.+|+.++++.| +|.+++
T Consensus 146 ~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~----~~~~ipIIgNGgI~s~eda~e~l~~G-Ad~Vmv 219 (231)
T TIGR00736 146 IPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSE----EFNDKIIIGNNSIDDIESAKEMLKAG-ADFVSV 219 (231)
T ss_pred CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHH----hcCCCcEEEECCcCCHHHHHHHHHhC-CCeEEE
Confidence 65677899999999987655666544432 5666776654 45 49999999999999999999965 788876
No 62
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.79 E-value=0.056 Score=53.88 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCCCEEeEecC---------------------CChh----HHHHHHHHHHHh-CCCc--EEEEeC----C
Q 015161 193 AAELASKYRKQGFTTLKLKVG---------------------KNLK----EDIEVLRAIRAV-HPDS--SFILDA----N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~~----~D~~~v~avr~~-~~~~--~l~vDa----N 240 (412)
.++.|+++.+.||..+.|..+ .+++ --.+.+++||++ ++++ .+++-. .
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~ 222 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTE 222 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccC
Confidence 355667778899999999983 1222 224678999997 6664 455544 3
Q ss_pred CCCCHHHHHHHHHHHHcCC-CCCceeec-------C------CCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 EGYKPQEAVEVLEKLYEMG-VTPVLFEQ-------P------VHR------DDWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~-l~~~~iEe-------P------~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
++++.++++++++.|++.+ +. |++= + .++ .+++..++++ +..++||...=.+.+
T Consensus 223 ~G~~~~e~~~~~~~l~~~G~vd--~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~~ 296 (343)
T cd04734 223 GGLSPDEALEIAARLAAEGLID--YVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIK----QAVDLPVFHAGRIRD 296 (343)
T ss_pred CCCCHHHHHHHHHHHHhcCCCC--EEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHH----HHcCCCEEeeCCCCC
Confidence 4588999999999999987 54 6651 1 111 1233333443 467899999888999
Q ss_pred HHHHHHHHHcCCCCEEEe
Q 015161 301 LDDVKKIVKGNLADVINI 318 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~i 318 (412)
++++.++++.+.+|.+.+
T Consensus 297 ~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 297 PAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHcCCCCeeee
Confidence 999999999998999854
No 63
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.78 E-value=0.06 Score=53.02 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=93.7
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhCCCcEEEEeCCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVHPDSSFILDANE 241 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~~~~~l~vDaN~ 241 (412)
..|+...+...+++++.+.++.+.+.||..|-+..|. +++.-.+.++++|+..+ +.+.+-...
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~-~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD-IPVTVKIRI 140 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC-CCEEEEEEc
Confidence 4566677778899999999888888999999998872 12333456777777532 344444444
Q ss_pred CCCH--HHHHHHHHHHHcCCCCCceee-------cCCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 242 GYKP--QEAVEVLEKLYEMGVTPVLFE-------QPVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 242 ~~~~--~~A~~~~~~l~~~~l~~~~iE-------eP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
+|+. .+..++++.+++.|+. +|- +-.+ +-+++..++++ +..++||.+.=.+.+.+++.++++..
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d--~i~vh~r~~~~~~~~~~~~~~i~~i~----~~~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQ--AVTLHGRTRAQGYSGEANWDIIARVK----QAVRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCC--EEEEEcccccccCCCchhHHHHHHHH----HcCCCcEEEeCCCCCHHHHHHHHHhh
Confidence 5542 3467888899888764 442 1111 22465566665 36789999999999999999999777
Q ss_pred CCCEEEec
Q 015161 312 LADVINIK 319 (412)
Q Consensus 312 a~d~v~ik 319 (412)
.+|.+++=
T Consensus 215 gad~Vmig 222 (319)
T TIGR00737 215 GCDGVMIG 222 (319)
T ss_pred CCCEEEEC
Confidence 79998773
No 64
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.78 E-value=0.041 Score=55.64 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=82.6
Q ss_pred HHHHHHHHHHcCCCEEeEec---CC-------------------Chh----HHHHHHHHHHHh-CCCcEE--EEeC----
Q 015161 193 AAELASKYRKQGFTTLKLKV---GK-------------------NLK----EDIEVLRAIRAV-HPDSSF--ILDA---- 239 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKv---G~-------------------~~~----~D~~~v~avr~~-~~~~~l--~vDa---- 239 (412)
..+.|+.+.+.||..+.|.. |. +++ --.+.|++||++ ++++.+ ++..
T Consensus 152 f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~ 231 (382)
T cd02931 152 FGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYI 231 (382)
T ss_pred HHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhc
Confidence 35566777789999999997 41 122 234678999997 666443 3332
Q ss_pred --------------CCCCCHHHHHHHHHHHHcCCCCCceeec-------CC---CCCC-HHH-HHHhHHHhhcccCCeEE
Q 015161 240 --------------NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV---HRDD-WEG-LGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 240 --------------N~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~---~~~d-~~~-~~~l~~~~~~~~~ipIa 293 (412)
.++++.++++++++.|++.++. |++= +. ++.. .++ +..+.+.+++..++||.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD--~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi 309 (382)
T cd02931 232 KDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYD--ALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPVI 309 (382)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHhCCC--EEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCEE
Confidence 3478999999999999988764 6632 11 0000 000 11122223346789999
Q ss_pred eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 294 ADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 294 ~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+-=.+.++++..++++.+.+|.+.+
T Consensus 310 ~~G~i~~~~~~~~~l~~g~~D~V~~ 334 (382)
T cd02931 310 MAGRMEDPELASEAINEGIADMISL 334 (382)
T ss_pred EeCCCCCHHHHHHHHHcCCCCeeee
Confidence 9888999999999999999999854
No 65
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.75 E-value=0.055 Score=52.82 Aligned_cols=131 Identities=16% Similarity=0.224 Sum_probs=91.7
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcC-CCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQG-FTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~G-f~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~ 245 (412)
+|+..++...++++..+.++++.+.| |..+-+.++ .+++.-.+.++++|++. ++.+.+.-+. +.
T Consensus 92 ~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~ 168 (301)
T PRK07259 92 TPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NV 168 (301)
T ss_pred CcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--Cc
Confidence 34556666678899988888888888 999988553 23445566788888865 5667776654 44
Q ss_pred HHHHHHHHHHHcCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhcccCCeEEeCCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADES 297 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs 297 (412)
++..++++.+++.++. .|. +|. .+..++..++++ +.+++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~----~~~~ipvi~~GG 242 (301)
T PRK07259 169 TDIVEIAKAAEEAGAD--GLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVY----QAVDIPIIGMGG 242 (301)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHH----HhCCCCEEEECC
Confidence 5778888889887753 331 111 111233444444 356899999989
Q ss_pred CCCHHHHHHHHHcCCCCEEEec
Q 015161 298 CRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.+.+++.+++..| +|.+++=
T Consensus 243 I~~~~da~~~l~aG-Ad~V~ig 263 (301)
T PRK07259 243 ISSAEDAIEFIMAG-ASAVQVG 263 (301)
T ss_pred CCCHHHHHHHHHcC-CCceeEc
Confidence 99999999999988 6888764
No 66
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.74 E-value=0.082 Score=52.08 Aligned_cols=142 Identities=13% Similarity=0.190 Sum_probs=96.6
Q ss_pred HhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C-
Q 015161 171 LFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P- 231 (412)
Q Consensus 171 LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~- 231 (412)
+|.-.....|+...+...+|+++++.++.+.+.||..|-+.+|. +++.-.+.|++++++. |
T Consensus 47 ~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PV 126 (318)
T TIGR00742 47 ILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPV 126 (318)
T ss_pred HcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCe
Confidence 44433344566777888899999888888888899999998872 3344456678888753 3
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee--------cCCCC--------CCHHHHHHhHHHhhccc-CCeEEe
Q 015161 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE--------QPVHR--------DDWEGLGHVSHIAKDKF-GVSVAA 294 (412)
Q Consensus 232 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE--------eP~~~--------~d~~~~~~l~~~~~~~~-~ipIa~ 294 (412)
.+++++-.+..=+.++++++++.+++.|+. +|. |-+.. -+|+..+++.+ .. ++||.+
T Consensus 127 svKiR~g~~~~~~~~~~~~~~~~l~~~G~~--~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~----~~~~ipVi~ 200 (318)
T TIGR00742 127 TVKHRIGIDPLDSYEFLCDFVEIVSGKGCQ--NFIVHARKAWLSGLSPKENREIPPLRYERVYQLKK----DFPHLTIEI 200 (318)
T ss_pred EEEEecCCCCcchHHHHHHHHHHHHHcCCC--EEEEeCCchhhcCCCccccccCCchhHHHHHHHHH----hCCCCcEEE
Confidence 345554211111346788999999988874 442 32221 25666666653 34 799999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.=.+.+.+|+.+++. .+|.+++=-
T Consensus 201 NGdI~s~~da~~~l~--g~dgVMigR 224 (318)
T TIGR00742 201 NGGIKNSEQIKQHLS--HVDGVMVGR 224 (318)
T ss_pred ECCcCCHHHHHHHHh--CCCEEEECH
Confidence 888999999999985 489987743
No 67
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.56 E-value=0.084 Score=52.94 Aligned_cols=119 Identities=27% Similarity=0.358 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Chh----HHHHHHHHHHHh-CCCcEEEEeCC------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NLK----EDIEVLRAIRAV-HPDSSFILDAN------ 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~~----~D~~~v~avr~~-~~~~~l~vDaN------ 240 (412)
..+.|+.+++.||..+-|+.+. +++ --.+.+++||++ ++++.+.+=.|
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~ 225 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQD 225 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccc
Confidence 3556677788999999999752 122 234678999997 77754443222
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCCCceeec-------C-CCCCCHHHHHHhHHHhhcccCCeEEeCCCC----------
Q 015161 241 ----EGYKPQEAVEVLEKLYEMGVTPVLFEQ-------P-VHRDDWEGLGHVSHIAKDKFGVSVAADESC---------- 298 (412)
Q Consensus 241 ----~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~---------- 298 (412)
.+.++++++++++.|++.++. ||+= | ....++.-.++++ +..++||..-=++
T Consensus 226 ~~~~~g~~~~e~~~~~~~l~~~gvd--~i~vs~g~~~~~~~~~~~~~~~~~~k----~~~~~pv~~~G~i~~~~~~~~~~ 299 (361)
T cd04747 226 YTARLADTPDELEALLAPLVDAGVD--IFHCSTRRFWEPEFEGSELNLAGWTK----KLTGLPTITVGSVGLDGDFIGAF 299 (361)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEecCCCccCCCcCccchhHHHHHH----HHcCCCEEEECCccccccccccc
Confidence 247889999999999988764 5532 2 2111222222333 4568899775554
Q ss_pred --------CCHHHHHHHHHcCCCCEEE
Q 015161 299 --------RSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 299 --------~~~~~~~~~i~~~a~d~v~ 317 (412)
.++++..++++.+.+|.+.
T Consensus 300 ~~~~~~~~~~~~~a~~~l~~g~~D~V~ 326 (361)
T cd04747 300 AGDEGASPASLDRLLERLERGEFDLVA 326 (361)
T ss_pred ccccccccCCHHHHHHHHHCCCCCeeh
Confidence 5899999999999899873
No 68
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=96.47 E-value=0.14 Score=48.19 Aligned_cols=131 Identities=11% Similarity=0.185 Sum_probs=88.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-C---------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-K---------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++...+++++.+.++...+ +...+-+-+| + +++.-.+.++++|+. ++.+.+=...+|
T Consensus 74 p~~vqi~g~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~--~~pVsvKir~g~ 150 (233)
T cd02911 74 LVGVNVRSSSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET--GVPVSVKIRAGV 150 (233)
T ss_pred eEEEEecCCCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc--CCCEEEEEcCCc
Confidence 44455666688888877776644 4588888777 2 244445667888875 455665555568
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCC--CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVH--RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~--~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+ ++.+++++.+++.|+...-+..-.+ .-|++..+++ +.++||.+.=.+.+.+++.+++..| +|.+++--.
T Consensus 151 ~-~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i------~~~ipVIgnGgI~s~eda~~~l~~G-aD~VmiGR~ 222 (233)
T cd02911 151 D-VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDI------STELFIIGNNSVTTIESAKEMFSYG-ADMVSVARA 222 (233)
T ss_pred C-cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHh------cCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEcCC
Confidence 7 7788899999998864212221111 2244444433 1579999999999999999999977 899887543
No 69
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=96.44 E-value=0.084 Score=53.00 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEe-------
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILD------- 238 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vD------- 238 (412)
..+.|+.+++.||..+-|+.+. ++ +--+|.|++||++ +++ +.+++-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~ 240 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN 240 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc
Confidence 3556778888999999999751 12 1234678999997 655 334442
Q ss_pred CCCCCCHHH-HHHHHHHHHcCCCCCceeecCCCCCC-HHH-HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 239 ANEGYKPQE-AVEVLEKLYEMGVTPVLFEQPVHRDD-WEG-LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 239 aN~~~~~~~-A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~-~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
..++++.+| ++++++.|++.++. ||+=-.+... ... ...+.+.+++.+++||...-. .+++...++++.+.+|.
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD--~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~-~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIA--YLHMSEPDWAGGEPYSDAFREKVRARFHGVIIGAGA-YTAEKAETLIGKGLIDA 317 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCC--EEEeccccccCCccccHHHHHHHHHHCCCCEEEeCC-CCHHHHHHHHHcCCCCE
Confidence 234688888 89999999988764 6653221100 000 112222334467888887655 48999999999999999
Q ss_pred EEe
Q 015161 316 INI 318 (412)
Q Consensus 316 v~i 318 (412)
+.+
T Consensus 318 V~~ 320 (362)
T PRK10605 318 VAF 320 (362)
T ss_pred EEE
Confidence 743
No 70
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.36 E-value=0.14 Score=49.70 Aligned_cols=132 Identities=16% Similarity=0.211 Sum_probs=89.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
|+..++...++++..+.++.+.+.|+..+-+.++ .+++.-.+.++++|+.. ++.+.+-.+ .+.++
T Consensus 91 p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~--~~~~~ 167 (296)
T cd04740 91 PVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT--PNVTD 167 (296)
T ss_pred cEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC--CCchh
Confidence 4555666667888888888888889999999765 23444556788888864 455555543 33446
Q ss_pred HHHHHHHHHcCCCCCceee---------------cCC-------------CCCCHHHHHHhHHHhhcccCCeEEeCCCCC
Q 015161 248 AVEVLEKLYEMGVTPVLFE---------------QPV-------------HRDDWEGLGHVSHIAKDKFGVSVAADESCR 299 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iE---------------eP~-------------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~ 299 (412)
..++++.+++.++. .|- .|. .+..++..++++ +.+++||.+.=.+.
T Consensus 168 ~~~~a~~~~~~G~d--~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~----~~~~ipii~~GGI~ 241 (296)
T cd04740 168 IVEIARAAEEAGAD--GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVY----KAVEIPIIGVGGIA 241 (296)
T ss_pred HHHHHHHHHHcCCC--EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHH----HhcCCCEEEECCCC
Confidence 77888888887653 221 111 011123344443 45689999999999
Q ss_pred CHHHHHHHHHcCCCCEEEecCC
Q 015161 300 SLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 300 ~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+++.+++..| +|.+++=-.
T Consensus 242 ~~~da~~~l~~G-Ad~V~igra 262 (296)
T cd04740 242 SGEDALEFLMAG-ASAVQVGTA 262 (296)
T ss_pred CHHHHHHHHHcC-CCEEEEchh
Confidence 999999999988 699887533
No 71
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.12 E-value=0.15 Score=56.40 Aligned_cols=144 Identities=20% Similarity=0.282 Sum_probs=91.6
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCcEE--EEeC----C
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDSSF--ILDA----N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~~l--~vDa----N 240 (412)
..+.++++++.||..+-|..+. ++ +--++.+++||++ ++++.+ ++-+ .
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~ 632 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE 632 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC
Confidence 3556677788999999998761 12 2235678999997 566433 3332 3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeec--------CCCCCCHHHH-HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------PVHRDDWEGL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEe--------P~~~~d~~~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
++|+.++++++++.|++.++. ||+= +.+.. ..++ ..+.+.+++..++||..-=.+.+++++.++++.+
T Consensus 633 ~g~~~~~~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~-~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 633 GGNTPDDAVEIARAFKAAGAD--LIDVSSGQVSKDEKPVY-GRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCc--EEEeCCCCCCcCCCCCc-CccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 578999999999999998864 6642 11000 0001 1122233446789999988899999999999999
Q ss_pred CCCEEEecCCCCcHHHHHHHHHHHHHcCCc
Q 015161 312 LADVINIKLAKVGVLGALEIIEVVRASGLN 341 (412)
Q Consensus 312 a~d~v~ik~~~~Git~~l~i~~~A~~~gi~ 341 (412)
.+|.+.+--.. +..---+...+++.+..
T Consensus 710 ~~D~v~~gR~~--l~dP~~~~~~~~~~~~~ 737 (765)
T PRK08255 710 RADLCALARPH--LADPAWTLHEAAEIGYR 737 (765)
T ss_pred CcceeeEcHHH--HhCccHHHHHHHHcCCC
Confidence 99997542111 22111234445666664
No 72
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=95.92 E-value=0.21 Score=49.58 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCCEEeEecCC---------------------ChhH----HHHHHHHHHHhCC-CcEEEEe----CCCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK---------------------NLKE----DIEVLRAIRAVHP-DSSFILD----ANEGY 243 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~---------------------~~~~----D~~~v~avr~~~~-~~~l~vD----aN~~~ 243 (412)
.+.|+.+.+.||..+.|..+. +++. -.+.+++||++.+ .+.+++- .++++
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~ 224 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGL 224 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCC
Confidence 555677788999999999761 2222 2356788888632 2333332 34588
Q ss_pred CHHHHHHHHHHHHcCCCCCceeec--------CCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQ--------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEe--------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+.++++++++.|++.++. ||+= +.. ..+++..+++ ++..++||..-=.+.++++..++++.+.
T Consensus 225 ~~~e~~~i~~~l~~~gvD--~i~vs~g~~~~~~~~~~~~~~~~~~~~i----k~~~~ipVi~~G~i~~~~~a~~~l~~g~ 298 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVD--LIDVSSGAVVPARIDVYPGYQVPFAEHI----REHANIATGAVGLITSGAQAEEILQNNR 298 (337)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEeCCCCCCCCCCCCCccccHHHHHHH----HhhcCCcEEEeCCCCCHHHHHHHHHcCC
Confidence 999999999999988764 5542 111 1123333334 4467899988778899999999999998
Q ss_pred CCEEE
Q 015161 313 ADVIN 317 (412)
Q Consensus 313 ~d~v~ 317 (412)
+|.|.
T Consensus 299 ~D~V~ 303 (337)
T PRK13523 299 ADLIF 303 (337)
T ss_pred CChHH
Confidence 99863
No 73
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.89 E-value=0.27 Score=47.87 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=97.5
Q ss_pred eeceeecCCCHHHHHHHHHHHHHc--CCCEEeEecC------------CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQ--GFTTLKLKVG------------KNLKEDIEVLRAIRAVHPDSSFILDANEGYKP 245 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~--Gf~~~KiKvG------------~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~ 245 (412)
|+..++...+++++.+.++.+.+. ++..|-+-+| .+++.-.+.++++|+.. ++.+.+.-+. +.
T Consensus 92 pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~--~~ 168 (300)
T TIGR01037 92 PLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLSP--NV 168 (300)
T ss_pred cEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECCC--Ch
Confidence 445566566788888888777654 4888998877 13444456778888764 4567766654 44
Q ss_pred HHHHHHHHHHHcCCCCCceee---------------cCCC---------CCC----HHHHHHhHHHhhcccCCeEEeCCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFE---------------QPVH---------RDD----WEGLGHVSHIAKDKFGVSVAADES 297 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iE---------------eP~~---------~~d----~~~~~~l~~~~~~~~~ipIa~dEs 297 (412)
++..++++.+++.++. +|. +|.. +.. ++...++ ++..++||.+.=.
T Consensus 169 ~~~~~~a~~l~~~G~d--~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i----~~~~~ipvi~~GG 242 (300)
T TIGR01037 169 TDITEIAKAAEEAGAD--GLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDV----YKMVDIPIIGVGG 242 (300)
T ss_pred hhHHHHHHHHHHcCCC--EEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHH----HhcCCCCEEEECC
Confidence 6778899999988864 553 1100 000 1222333 3467899999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEecCCCC--c--HHH-HHHHHHHHHHcCCc
Q 015161 298 CRSLDDVKKIVKGNLADVINIKLAKV--G--VLG-ALEIIEVVRASGLN 341 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~ik~~~~--G--it~-~l~i~~~A~~~gi~ 341 (412)
+.+.+++.+++..| +|.+++=-.-+ | +.. ...+.++.+++|..
T Consensus 243 I~s~~da~~~l~~G-Ad~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~~ 290 (300)
T TIGR01037 243 ITSFEDALEFLMAG-ASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGFT 290 (300)
T ss_pred CCCHHHHHHHHHcC-CCceeecHHHhcCchHHHHHHHHHHHHHHHcCCC
Confidence 99999999999987 88887643222 2 222 22355666666653
No 74
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.87 E-value=0.26 Score=49.39 Aligned_cols=124 Identities=22% Similarity=0.233 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEe---C-C
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILD---A-N 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vD---a-N 240 (412)
..+.++++++.||..+.|+-.. ++ +--+|.|++||++ +++. .+++= . +
T Consensus 151 f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 151 FARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC
Confidence 3566778888999999998641 12 2345779999997 6663 34432 2 2
Q ss_pred -CCCCHHHHHHHHHHHHcCC-CCCc----eeecCCCCCCHH--HH-HHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 -EGYKPQEAVEVLEKLYEMG-VTPV----LFEQPVHRDDWE--GL-GHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 -~~~~~~~A~~~~~~l~~~~-l~~~----~iEeP~~~~d~~--~~-~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
.+|+.++++++++.|++.+ +... |-.++-+.-... ++ ......++....+|+.+--.+++++....+++.|
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC
Confidence 3789999999999999988 4311 112221111111 11 1222222345679999988899999999999999
Q ss_pred CCCEE
Q 015161 312 LADVI 316 (412)
Q Consensus 312 a~d~v 316 (412)
.+|.+
T Consensus 311 ~aDlV 315 (363)
T COG1902 311 RADLV 315 (363)
T ss_pred CCCEE
Confidence 89987
No 75
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.67 E-value=0.24 Score=49.54 Aligned_cols=119 Identities=17% Similarity=0.261 Sum_probs=79.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC---------------------CChhH----HHHHHHHHHHh-C----CCcEEEE--eC-
Q 015161 193 AAELASKYRKQGFTTLKLKVG---------------------KNLKE----DIEVLRAIRAV-H----PDSSFIL--DA- 239 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG---------------------~~~~~----D~~~v~avr~~-~----~~~~l~v--Da- 239 (412)
..+.|+++++.||..+-|..+ .+++. -.+.+++||++ + +++.+.+ ..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 456677788899999999864 12222 24568899997 5 5655443 32
Q ss_pred ---CCCCCHHHHHHHHHHHHcCCCCCceeec-------CCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 240 ---NEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 240 ---N~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
.++++.++++++++.|++.++. ||+= +.. ....+..+++++.. ..++||.+-=.++++++..+
T Consensus 226 ~~~~~g~~~ee~~~i~~~L~~~GvD--~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~--~~~iPVi~~Ggi~t~e~ae~ 301 (353)
T cd04735 226 EPEEPGIRMEDTLALVDKLADKGLD--YLHISLWDFDRKSRRGRDDNQTIMELVKERI--AGRLPLIAVGSINTPDDALE 301 (353)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCCC--EEEeccCccccccccCCcchHHHHHHHHHHh--CCCCCEEEECCCCCHHHHHH
Confidence 3577899999999999998874 7761 111 11223334444321 13689988778899999999
Q ss_pred HHHcCCCCEE
Q 015161 307 IVKGNLADVI 316 (412)
Q Consensus 307 ~i~~~a~d~v 316 (412)
+++.+ +|.+
T Consensus 302 ~l~~g-aD~V 310 (353)
T cd04735 302 ALETG-ADLV 310 (353)
T ss_pred HHHcC-CChH
Confidence 99875 7765
No 76
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=95.45 E-value=0.32 Score=46.31 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=99.4
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------------C
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG--------------Y 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~--------------~ 243 (412)
|+....++.+.+++ +++...|... +-+|...-.|.+.++.+.+.++ .+.+.+|++.+ |
T Consensus 76 pv~~~GGi~s~~d~----~~~~~~Ga~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw 149 (254)
T TIGR00735 76 PLTVGGGIKSIEDV----DKLLRAGADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGG 149 (254)
T ss_pred CEEEECCCCCHHHH----HHHHHcCCCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCC
Confidence 33444456666554 4445567655 4567555567788888888754 57889997532 2
Q ss_pred ---CHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCC
Q 015161 244 ---KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD 314 (412)
Q Consensus 244 ---~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d 314 (412)
+..+.+++++.+++.++.-.-+ ..+. ..|++-++++.+ .+++||.+.=-+.+++++.++++.+.+|
T Consensus 150 ~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~~~~g~~d 224 (254)
T TIGR00735 150 RESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTKSGYDLELTKAVSE----AVKIPVIASGGAGKPEHFYEAFTKGKAD 224 (254)
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCCCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCcc
Confidence 2345678889999888651122 1122 234666677654 5789998888889999999999988788
Q ss_pred EEEecCCC-CcHHHHHHHHHHHHHcCCcE
Q 015161 315 VINIKLAK-VGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 315 ~v~ik~~~-~Git~~l~i~~~A~~~gi~~ 342 (412)
.+.+--.. -|-....++.+.++++|+++
T Consensus 225 gv~~g~a~~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 225 AALAASVFHYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred eeeEhHHHhCCCCCHHHHHHHHHHCCCcc
Confidence 87553322 24123556778888999875
No 77
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.29 E-value=0.71 Score=45.92 Aligned_cols=119 Identities=13% Similarity=0.180 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeCC-----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDAN----- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDaN----- 240 (412)
..+.|+.+++.||..+.+..+. ++ +--.+.+++||++ +++ +.+++-+.
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~ 233 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFND 233 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCC
Confidence 3556677888999999998762 12 2234678999986 554 44444332
Q ss_pred --CCCCHHHHHHHHHHHHcCCCCCceeec--CC-----CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC
Q 015161 241 --EGYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-----HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-----~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
.+.+.++++++++.|++.++. +|+= .. ....++..++++ +.+++||..--.+. +++..++++.+
T Consensus 234 ~~~~~~~ee~~~~~~~l~~~g~d--~i~vs~g~~~~~~~~~~~~~~~~ik----~~~~ipvi~~G~i~-~~~a~~~l~~g 306 (338)
T cd02933 234 MGDSDPEATFSYLAKELNKRGLA--YLHLVEPRVAGNPEDQPPDFLDFLR----KAFKGPLIAAGGYD-AESAEAALADG 306 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCc--EEEEecCCCCCcccccchHHHHHHH----HHcCCCEEEECCCC-HHHHHHHHHcC
Confidence 245889999999999988753 5552 11 122344444554 35789998876665 99999999999
Q ss_pred CCCEEEe
Q 015161 312 LADVINI 318 (412)
Q Consensus 312 a~d~v~i 318 (412)
.+|.+.+
T Consensus 307 ~~D~V~~ 313 (338)
T cd02933 307 KADLVAF 313 (338)
T ss_pred CCCEEEe
Confidence 9999854
No 78
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=95.04 E-value=0.29 Score=45.02 Aligned_cols=96 Identities=11% Similarity=0.204 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++++.++.|.+.|+. .+|=++...+. +..+++++. ..++.|.+| ++.+.++++++++.|+ +++ +-|..
T Consensus 18 ~~e~a~~~~~al~~~Gi~--~iEit~~t~~a~~~i~~l~~~---~~~~~vGAG-TVl~~~~a~~a~~aGA-~Fi-vsP~~ 89 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLR--VLEVTLRTPVALDAIRLLRKE---VPDALIGAG-TVLNPEQLRQAVDAGA-QFI-VSPGL 89 (204)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEEEE-eCCCHHHHHHHHHcCC-CEE-ECCCC
Confidence 789999999999999986 99999986554 446666542 224667666 7899999999999985 555 22222
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
..++++.|+++|+++++|++.-|.+
T Consensus 90 -----~~~v~~~~~~~~i~~iPG~~TptEi 114 (204)
T TIGR01182 90 -----TPELAKHAQDHGIPIIPGVATPSEI 114 (204)
T ss_pred -----CHHHHHHHHHcCCcEECCCCCHHHH
Confidence 2578899999999999999976655
No 79
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=94.99 E-value=0.86 Score=45.90 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=79.1
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCC----
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDAN---- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vDaN---- 240 (412)
..+.|+++.+.||..+-|..+. ++ +--.+.|++||++ ++++ .+++-+.
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 4566777888999999998762 12 2234678999997 6674 4444332
Q ss_pred --CCCCHHHHHHHHHHHHcCCCC-----CceeecC-CC----CC--CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 241 --EGYKPQEAVEVLEKLYEMGVT-----PVLFEQP-VH----RD--DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~~l~-----~~~iEeP-~~----~~--d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
++++.++++++++.|++. +. .-+.+.. .. +. .++..+++ ++..++||..-=.+.++++..+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~i----k~~~~~pvi~~G~i~~~~~~~~ 306 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFV----KQVTSKPVVGVGRFTSPDKMVE 306 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHH----HHHCCCCEEEeCCCCCHHHHHH
Confidence 237899999999999873 11 0011211 10 11 12222333 3467899988778899999999
Q ss_pred HHHcCCCCEEEe
Q 015161 307 IVKGNLADVINI 318 (412)
Q Consensus 307 ~i~~~a~d~v~i 318 (412)
+++.+.+|.+.+
T Consensus 307 ~l~~g~~D~V~~ 318 (370)
T cd02929 307 VVKSGILDLIGA 318 (370)
T ss_pred HHHcCCCCeeee
Confidence 999999999754
No 80
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=94.90 E-value=0.46 Score=44.94 Aligned_cols=103 Identities=19% Similarity=0.209 Sum_probs=77.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeE-------ecC-------CChhHHHHHHHHHHHh--C-CCcEE--EEeCCCC--CC
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKL-------KVG-------KNLKEDIEVLRAIRAV--H-PDSSF--ILDANEG--YK 244 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~Ki-------KvG-------~~~~~D~~~v~avr~~--~-~~~~l--~vDaN~~--~~ 244 (412)
+..+++++.+.++++.+.|...+|+ |.| -+.++-++++++++++ . +++.| +.|+-.. ..
T Consensus 79 G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 79 GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCC
Confidence 4456777888888999999999999 222 2566778889999986 3 35544 5676544 67
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d 295 (412)
.++|++.++...+.|-...|+|-|. +.+.++++.+ ..+.|+..-
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~---~~~~~~~~~~----~~~~Pl~~~ 202 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLK---DPEEIRAFAE----APDVPLNVN 202 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCC---CHHHHHHHHh----cCCCCEEEE
Confidence 9999999999999887667999776 5566777764 467888765
No 81
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.52 E-value=0.62 Score=43.41 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.++|++.++.|-+.|+. .+|=++...+ .+.+++|++.++++. ++-|.+| ++.+.++++.+++.|+ +++ +-|.
T Consensus 25 ~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG-TVl~~e~a~~a~~aGA-~Fi-VsP~ 99 (222)
T PRK07114 25 DVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG-SIVDAATAALYIQLGA-NFI-VTPL 99 (222)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE-eCcCHHHHHHHHHcCC-CEE-ECCC
Confidence 789999999999999986 9999987543 555666654332222 2445554 8899999999999985 554 2222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. -.++++.|+++|++++||++.-|.+
T Consensus 100 ~-----~~~v~~~~~~~~i~~iPG~~TpsEi 125 (222)
T PRK07114 100 F-----NPDIAKVCNRRKVPYSPGCGSLSEI 125 (222)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 2 1567899999999999999976655
No 82
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.40 E-value=0.62 Score=42.75 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+.+++++.++.|.+.|+. .+|=++...+ ++.++++++. .-++-|.+| ++.+.++++++++.|+ +++ +-|.
T Consensus 13 ~~~~~a~~ia~al~~gGi~--~iEit~~tp~a~~~I~~l~~~---~~~~~vGAG-TVl~~e~a~~ai~aGA-~Fi-vSP~ 84 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLP--AIEITLRTPAALDAIRAVAAE---VEEAIVGAG-TILNAKQFEDAAKAGS-RFI-VSPG 84 (201)
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHHH---CCCCEEeeE-eCcCHHHHHHHHHcCC-CEE-ECCC
Confidence 3789999999999999986 9999998655 3445555542 223556555 7899999999999985 554 2222
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
. -.++++.|+++|+++++|++.-|.+..
T Consensus 85 ~-----~~~vi~~a~~~~i~~iPG~~TptEi~~ 112 (201)
T PRK06015 85 T-----TQELLAAANDSDVPLLPGAATPSEVMA 112 (201)
T ss_pred C-----CHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 2 257789999999999999997666533
No 83
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.35 E-value=0.55 Score=43.15 Aligned_cols=96 Identities=14% Similarity=0.194 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
++++|+..++.|-+-|+. -||=|+...+. +..+++++. .-++-|.+| ++-+.+++.++++.|+-=++.|
T Consensus 23 ~~e~a~~~a~Ali~gGi~--~IEITl~sp~a~e~I~~l~~~---~p~~lIGAG-TVL~~~q~~~a~~aGa~fiVsP---- 92 (211)
T COG0800 23 DVEEALPLAKALIEGGIP--AIEITLRTPAALEAIRALAKE---FPEALIGAG-TVLNPEQARQAIAAGAQFIVSP---- 92 (211)
T ss_pred CHHHHHHHHHHHHHcCCC--eEEEecCCCCHHHHHHHHHHh---CcccEEccc-cccCHHHHHHHHHcCCCEEECC----
Confidence 689999999999999986 99999997654 556666642 224556555 7889999999999986433333
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
|++ -++++.|..+|++++||++.-|.+
T Consensus 93 -~~~--~ev~~~a~~~~ip~~PG~~TptEi 119 (211)
T COG0800 93 -GLN--PEVAKAANRYGIPYIPGVATPTEI 119 (211)
T ss_pred -CCC--HHHHHHHHhCCCcccCCCCCHHHH
Confidence 222 567899999999999999865544
No 84
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.94 E-value=0.75 Score=42.64 Aligned_cols=99 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+++++.++.|.+-|+. .+|=++...+ ++.+++++++....-++-|.+| ++.+.++++++++.|+ +++. -|+.
T Consensus 23 ~~~~a~~~~~al~~~Gi~--~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG-TV~~~~~~~~a~~aGA-~Fiv-sP~~ 97 (213)
T PRK06552 23 SKEEALKISLAVIKGGIK--AIEVTYTNPFASEVIKELVELYKDDPEVLIGAG-TVLDAVTARLAILAGA-QFIV-SPSF 97 (213)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEECCCccHHHHHHHHHHHcCCCCCeEEeee-eCCCHHHHHHHHHcCC-CEEE-CCCC
Confidence 789999999999999986 9999998655 3446666542110013555555 8899999999999985 5542 3332
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. .++++.|+++|+++++|++..+.+
T Consensus 98 ~-----~~v~~~~~~~~i~~iPG~~T~~E~ 122 (213)
T PRK06552 98 N-----RETAKICNLYQIPYLPGCMTVTEI 122 (213)
T ss_pred C-----HHHHHHHHHcCCCEECCcCCHHHH
Confidence 2 567888999999999999876554
No 85
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.70 E-value=0.76 Score=42.55 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.-++++|++.++.|.+.|+. .||=++...+ .+..+++++. ..++-|.+| ++.+.++++++++.|+ +++.. +
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~---~p~~~IGAG-TVl~~~~a~~a~~aGA-~Fivs-P 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKE---VPEALIGAG-TVLNPEQLAQAIEAGA-QFIVS-P 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHH---CCCCEEEEe-eccCHHHHHHHHHcCC-CEEEC-C
Confidence 45689999999999999986 9999987654 3445555532 234666666 6778899999999985 66532 1
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 321 AKVGVLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 321 ~~~Git~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
|+.+ ++++.|++++++++||++.-|.
T Consensus 95 ---~~~~--~vi~~a~~~~i~~iPG~~TptE 120 (212)
T PRK05718 95 ---GLTP--PLLKAAQEGPIPLIPGVSTPSE 120 (212)
T ss_pred ---CCCH--HHHHHHHHcCCCEeCCCCCHHH
Confidence 3333 7789999999999999986444
No 86
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=93.40 E-value=0.63 Score=46.33 Aligned_cols=126 Identities=22% Similarity=0.367 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCCc--EEEEeCCC---
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPDS--SFILDANE--- 241 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~~--~l~vDaN~--- 241 (412)
..+.|+.+++.||..+-|+.+. ++ +--++.|++||++ +++. .+++-+..
T Consensus 151 f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~ 230 (341)
T PF00724_consen 151 FAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVE 230 (341)
T ss_dssp HHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSST
T ss_pred HHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccC
Confidence 3556778888999999999761 12 2235678999997 7775 56676654
Q ss_pred -CCCHHHHHHHHHHHHcCCCCCc------e--eecCCC--CCCHHHH--HHhHHHhhcccCCeEEeCCCCCCHHHHHHHH
Q 015161 242 -GYKPQEAVEVLEKLYEMGVTPV------L--FEQPVH--RDDWEGL--GHVSHIAKDKFGVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 242 -~~~~~~A~~~~~~l~~~~l~~~------~--iEeP~~--~~d~~~~--~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i 308 (412)
+++.++..++++.+++.++... + ...|.. +.+.... ..+.+..+..+++||...-.+.+++...+++
T Consensus 231 ~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l 310 (341)
T PF00724_consen 231 GGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKAL 310 (341)
T ss_dssp TSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHH
Confidence 4456777667766665432100 1 112322 1111100 1122223346789999988899998899999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
+.+.+|.+-+
T Consensus 311 ~~g~~DlV~~ 320 (341)
T PF00724_consen 311 EEGKADLVAM 320 (341)
T ss_dssp HTTSTSEEEE
T ss_pred hcCCceEeec
Confidence 9999999843
No 87
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=93.27 E-value=0.68 Score=42.32 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-+.+++.+.++.|-+-|+. .+|=++...+. +.+++++++ .-++-|.+| ++.+.++++++++.|+ +++. -|
T Consensus 17 ~~~~~a~~~~~al~~gGi~--~iEiT~~t~~a~~~I~~l~~~---~p~~~vGAG-TV~~~e~a~~a~~aGA-~Fiv-SP- 87 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIR--AIEITLRTPNALEAIEALRKE---FPDLLVGAG-TVLTAEQAEAAIAAGA-QFIV-SP- 87 (196)
T ss_dssp SSGGGHHHHHHHHHHTT----EEEEETTSTTHHHHHHHHHHH---HTTSEEEEE-S--SHHHHHHHHHHT--SEEE-ES-
T ss_pred CCHHHHHHHHHHHHHCCCC--EEEEecCCccHHHHHHHHHHH---CCCCeeEEE-eccCHHHHHHHHHcCC-CEEE-CC-
Confidence 4578999999999999986 99999986654 445555543 335667666 7899999999999995 5442 22
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCcchHHHH
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~ 354 (412)
|+ .-++++.|+++|++++||++.-|.+..
T Consensus 88 --~~--~~~v~~~~~~~~i~~iPG~~TptEi~~ 116 (196)
T PF01081_consen 88 --GF--DPEVIEYAREYGIPYIPGVMTPTEIMQ 116 (196)
T ss_dssp --S----HHHHHHHHHHTSEEEEEESSHHHHHH
T ss_pred --CC--CHHHHHHHHHcCCcccCCcCCHHHHHH
Confidence 22 257789999999999999997666533
No 88
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=92.93 E-value=0.9 Score=44.39 Aligned_cols=97 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..+.-+++|++.|-. .+==-++. ++.+.+.++++ ++.+|+.+|=.+. ..-+...++.+ +|-+.+.|..
T Consensus 34 Dv~aTv~QI~~L~~aG~d--IVRvtv~~~e~A~A~~~Ik~----~~~vPLVaDiHf~-~rla~~~~~~g-~~k~RINPGN 105 (361)
T COG0821 34 DVEATVAQIKALERAGCD--IVRVTVPDMEAAEALKEIKQ----RLNVPLVADIHFD-YRLALEAAECG-VDKVRINPGN 105 (361)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEecCCHHHHHHHHHHHH----hCCCCEEEEeecc-HHHHHHhhhcC-cceEEECCcc
Confidence 355566777778887754 33333332 34556666654 6799999997755 55555666655 9999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 323 VG-VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 323 ~G-it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+| -.....+++.|+++|+++-+|--.
T Consensus 106 ig~~~~v~~vVe~Ak~~g~piRIGVN~ 132 (361)
T COG0821 106 IGFKDRVREVVEAAKDKGIPIRIGVNA 132 (361)
T ss_pred cCcHHHHHHHHHHHHHcCCCEEEeccc
Confidence 99 667899999999999999886543
No 89
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=92.79 E-value=2.3 Score=40.30 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=91.6
Q ss_pred ceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCC------------CCC---
Q 015161 182 DITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANE------------GYK--- 244 (412)
Q Consensus 182 ~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~------------~~~--- 244 (412)
....++.+.+++ +++...|...+ -+|...-.+.+.++.+.+.++ .+.+.+|... +|.
T Consensus 78 ~~~GGi~s~~~~----~~~l~~Ga~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~ 151 (253)
T PRK02083 78 TVGGGIRSVEDA----RRLLRAGADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPT 151 (253)
T ss_pred EeeCCCCCHHHH----HHHHHcCCCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceec
Confidence 334445565554 34445676554 556444456678888888753 4677888643 232
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.....++++++.+.++. .++=.++. -.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.+
T Consensus 152 ~~~~~~~~~~~~~~g~~-~ii~~~i~~~g~~~g~d~~~i~~~~~----~~~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 152 GLDAVEWAKEVEELGAG-EILLTSMDRDGTKNGYDLELTRAVSD----AVNVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CCCHHHHHHHHHHcCCC-EEEEcCCcCCCCCCCcCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 12446677788877764 22222222 246777787764 56899988888899999999997634666544
Q ss_pred c-CCCCcHHHHHHHHHHHHHcCCcE
Q 015161 319 K-LAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 319 k-~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
- .-.-|-....++.+.+++.|+++
T Consensus 227 g~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 227 ASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred hHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 2 22224223456667778888875
No 90
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=92.27 E-value=1.3 Score=43.52 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..++-+++|++.|-. .+==-++. ++.+.+.+++ +.+.+|+.+|=.+. ..-....++.+ +|-+.+.|..
T Consensus 32 Dv~atv~QI~~L~~aGce--iVRvavp~~~~A~al~~I~----~~~~iPlVADIHFd-~~lAl~a~~~g-~dkiRINPGN 103 (346)
T TIGR00612 32 DIDSTVAQIRALEEAGCD--IVRVTVPDRESAAAFEAIK----EGTNVPLVADIHFD-YRLAALAMAKG-VAKVRINPGN 103 (346)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHH----hCCCCCEEEeeCCC-cHHHHHHHHhc-cCeEEECCCC
Confidence 456667777888887754 44433432 2344555554 47899999997754 33344455544 8999999999
Q ss_pred Cc-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 323 VG-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 ~G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+| -....++++.|+++|+++-+|.-
T Consensus 104 ig~~e~v~~vv~~ak~~~ipIRIGVN 129 (346)
T TIGR00612 104 IGFRERVRDVVEKARDHGKAMRIGVN 129 (346)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 99 77899999999999999988543
No 91
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=92.14 E-value=1.9 Score=42.59 Aligned_cols=96 Identities=18% Similarity=0.261 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
+.+..++-+++|++.|-. .+==-++. ++.+.+++++ +++.+|+.+|=. ++..-+...++.| +|.+.+.|..
T Consensus 40 Dv~atv~Qi~~L~~aGce--iVRvav~~~~~a~al~~I~----~~~~iPlvADIH-Fd~~lAl~a~~~G-~~~iRINPGN 111 (360)
T PRK00366 40 DVEATVAQIKRLARAGCE--IVRVAVPDMEAAAALPEIK----KQLPVPLVADIH-FDYRLALAAAEAG-ADALRINPGN 111 (360)
T ss_pred hHHHHHHHHHHHHHcCCC--EEEEccCCHHHHHhHHHHH----HcCCCCEEEecC-CCHHHHHHHHHhC-CCEEEECCCC
Confidence 356667777788887764 44444442 2345555555 467999999965 6666666777765 8999999999
Q ss_pred Cc-HH-HHHHHHHHHHHcCCcEEEccC
Q 015161 323 VG-VL-GALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 ~G-it-~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+| +. ...++++.|+++|+++-+|.-
T Consensus 112 ig~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 112 IGKRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred CCchHHHHHHHHHHHHHCCCCEEEecC
Confidence 98 45 688899999999999988653
No 92
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.66 E-value=3.5 Score=38.59 Aligned_cols=122 Identities=21% Similarity=0.347 Sum_probs=77.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-C-CcEEEEeCC------CCCCHH---HHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDAN------EGYKPQ---EAVEVLEK 254 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~-~~~l~vDaN------~~~~~~---~A~~~~~~ 254 (412)
++.+.++ ++.+.+.|... +-+|...-.|.+.+..+++.+ . .+-+.+|+. .+|..+ ...++++.
T Consensus 84 Gi~~~~~----~~~~~~~Ga~~--v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 84 GIRSAED----AASLLDLGVDR--VILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 3445544 34455678774 566744445667788888874 3 355678865 355321 34567777
Q ss_pred HHcCCCCCcee-----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 255 LYEMGVTPVLF-----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 255 l~~~~l~~~~i-----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++.++....+ +......+++.++++++ ...+||.+.=-+.+.+++.++.+.| ++.+.+
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~----~~~iPvia~GGI~~~~di~~~~~~G-a~gv~v 221 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVD----SVDIPVIASGGVTTLDDLRALKEAG-AAGVVV 221 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 77777643232 22223346777887764 5689999988999999999987776 555544
No 93
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.63 E-value=3.4 Score=40.85 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCCEEeEecC-C---------ChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~D~~~v~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
.++.++.++++. .+...+-+-++ + +.+.-.+.++++|+... ++.+.+=....++.++..++++.+
T Consensus 147 ~~d~~~~~~~~~-~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l 225 (327)
T cd04738 147 VEDYVIGVRKLG-PYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVA 225 (327)
T ss_pred HHHHHHHHHHHH-hhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHH
Confidence 456666665543 34677887775 1 23334466788887532 455665555567777888999999
Q ss_pred HcCCCCCceee--c----------CCCCC-------------CHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHHH
Q 015161 256 YEMGVTPVLFE--Q----------PVHRD-------------DWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 256 ~~~~l~~~~iE--e----------P~~~~-------------d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i 308 (412)
++.++. +|. - |.... .++..++++ +.. ++||.+-=-+.+.+|+.+++
T Consensus 226 ~~aGad--~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~----~~~~~~ipIi~~GGI~t~~da~e~l 299 (327)
T cd04738 226 LEHGVD--GIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELY----KLTGGKIPIIGVGGISSGEDAYEKI 299 (327)
T ss_pred HHcCCc--EEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHH----HHhCCCCcEEEECCCCCHHHHHHHH
Confidence 988764 444 1 11100 123333443 344 68999888899999999999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
..| +|.+|+
T Consensus 300 ~aG-Ad~V~v 308 (327)
T cd04738 300 RAG-ASLVQL 308 (327)
T ss_pred HcC-CCHHhc
Confidence 876 787765
No 94
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=91.52 E-value=13 Score=36.81 Aligned_cols=128 Identities=19% Similarity=0.270 Sum_probs=84.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
.++++-+++++......+..+-+-+|.. ++|.++++++.++.+.+ -|.+|..++++... +++++.+.+.
T Consensus 79 ~~~e~~~~fv~~~~~~~~~~~~vavG~~-~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~-i~~ik~ik~~-------- 148 (346)
T PRK05096 79 YSVEEWAAFVNNSSADVLKHVMVSTGTS-DADFEKTKQILALSPALNFICIDVANGYSEHF-VQFVAKAREA-------- 148 (346)
T ss_pred CCHHHHHHHHHhccccccceEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHHh--------
Confidence 3667767777666545555566667642 48899999999863332 47789999987654 4555555442
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec-----------CCCCc---HHHHHHHH
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-----------LAKVG---VLGALEII 332 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik-----------~~~~G---it~~l~i~ 332 (412)
-.+++|.+| ++.+.+..+.+++.| +|++.+- .+-+| ++...+++
T Consensus 149 --------------------~P~~~vIaG-NV~T~e~a~~Li~aG-AD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a 206 (346)
T PRK05096 149 --------------------WPDKTICAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECA 206 (346)
T ss_pred --------------------CCCCcEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCccccCccccccChhHHHHHHHHH
Confidence 013456555 457777888888887 5776421 12234 56778899
Q ss_pred HHHHHcCCcEEEccC
Q 015161 333 EVVRASGLNLMIGGM 347 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~ 347 (412)
+.|+.+|++++-.+-
T Consensus 207 ~~a~~~gvpiIADGG 221 (346)
T PRK05096 207 DAAHGLGGQIVSDGG 221 (346)
T ss_pred HHHHHcCCCEEecCC
Confidence 999999999987553
No 95
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=91.52 E-value=2.6 Score=40.25 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=70.4
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEE--eCCCCCCHHHHH
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVK 305 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~ 305 (412)
.|+.++.+++++.|.+.|+. .||= |...++++.++++++.. .++.++ ..-...+..++.
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~---~~~~~~~~~~~~~~~~~~i~ 92 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVP--LIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEAL---KQAKLGVLLLPGIGTVDDLK 92 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCcccccCCCCCChHHHHHHHHHhc---cCCEEEEEecCCccCHHHHH
Confidence 46789999999999999985 8887 55566777777775421 234443 233455678888
Q ss_pred HHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 306 KIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
++.+.+ +|.+++-... . .....++++.|+++|+.+.+.-
T Consensus 93 ~a~~~g-~~~iri~~~~-s~~~~~~~~i~~ak~~G~~v~~~~ 132 (263)
T cd07943 93 MAADLG-VDVVRVATHC-TEADVSEQHIGAARKLGMDVVGFL 132 (263)
T ss_pred HHHHcC-CCEEEEEech-hhHHHHHHHHHHHHHCCCeEEEEE
Confidence 888765 7888774332 3 5678889999999999886644
No 96
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=91.23 E-value=4.2 Score=43.04 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=98.0
Q ss_pred eeeceeecCCCHHH-------HHHHHHHHHHcCCCEEeEecC--CCh--------hHHHHHHHHHHHhC-CC-cEEEEeC
Q 015161 179 ITTDITIPIVSPAE-------AAELASKYRKQGFTTLKLKVG--KNL--------KEDIEVLRAIRAVH-PD-SSFILDA 239 (412)
Q Consensus 179 i~~~~~i~~~~~~~-------~~~~~~~~~~~Gf~~~KiKvG--~~~--------~~D~~~v~avr~~~-~~-~~l~vDa 239 (412)
+|+-...++.+.++ ..+.++++...|...+=+--. .++ ..+.+.++.+.+.+ .+ +-+.+|+
T Consensus 315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~ 394 (538)
T PLN02617 315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDP 394 (538)
T ss_pred CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEec
Confidence 34444444555433 367788888888865554321 122 12457788888874 45 7788997
Q ss_pred CCC----------------------------------C---CHHHHHHHHHHHHcCCCCCceeecCCCCC------CHHH
Q 015161 240 NEG----------------------------------Y---KPQEAVEVLEKLYEMGVTPVLFEQPVHRD------DWEG 276 (412)
Q Consensus 240 N~~----------------------------------~---~~~~A~~~~~~l~~~~l~~~~iEeP~~~~------d~~~ 276 (412)
... | +--+++++++++++++.. ..+=-=+..| |++-
T Consensus 395 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gag-eil~t~id~DGt~~G~d~~l 473 (538)
T PLN02617 395 RRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAG-EILLNCIDCDGQGKGFDIEL 473 (538)
T ss_pred CcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCC-EEEEeeccccccccCcCHHH
Confidence 643 2 123578899999998864 3333333332 6776
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe-cCCCCcHHHHHHHHHHHHHcCCcE
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI-KLAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i-k~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
++++++ ..++||.+-=-+.+++|+.++++...+|.... .+-..+-....++-+..++.|+++
T Consensus 474 ~~~v~~----~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~~gi~v 536 (538)
T PLN02617 474 VKLVSD----AVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLEEGIET 536 (538)
T ss_pred HHHHHh----hCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHHCCCcc
Confidence 777764 67899988888899999999998654454432 122223222344456667777765
No 97
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.17 E-value=7.9 Score=37.69 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=81.8
Q ss_pred eeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG-~--------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++... +++++.+.++...+.|+..|-+-++ + +++.-.+.++++++.. ++.+.+=-.-
T Consensus 101 p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~-- 177 (299)
T cd02940 101 ILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIAKLTP-- 177 (299)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEEECCC--
Confidence 444455444 8888888888776679999998877 2 1222334466666642 2334443322
Q ss_pred CHHHHHHHHHHHHcCCCCCcee----------------ecCCC-----------------CCCHHHHHHhHHHhhccc--
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLF----------------EQPVH-----------------RDDWEGLGHVSHIAKDKF-- 288 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~i----------------EeP~~-----------------~~d~~~~~~l~~~~~~~~-- 288 (412)
+.++..++++.+++.++. .| +.|.. +-.++..++++ +..
T Consensus 178 ~~~~~~~~a~~~~~~Gad--gi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~----~~~~~ 251 (299)
T cd02940 178 NITDIREIARAAKEGGAD--GVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIA----RAPEP 251 (299)
T ss_pred CchhHHHHHHHHHHcCCC--EEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHH----HhcCC
Confidence 223566788888887653 33 22321 00144445554 355
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.+||.+.=-+.+.+|+.+++..| +|.+|+=-
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aG-A~~V~i~t 282 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLG-ASVVQVCT 282 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CChheEce
Confidence 79999999999999999999877 67887653
No 98
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=90.81 E-value=13 Score=37.45 Aligned_cols=104 Identities=14% Similarity=0.101 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee-------
Q 015161 194 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE------- 266 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE------- 266 (412)
.+.++.+.+.++.-+ +++.-.++++++|+++=.+.+++ ++..+.++++.+.+.++. +|-
T Consensus 102 a~aa~~~~e~~~~~~------~p~l~~~ii~~vr~a~VtvkiRl------~~~~~~e~a~~l~eAGad--~I~ihgrt~~ 167 (369)
T TIGR01304 102 AAATRLLQELHAAPL------KPELLGERIAEVRDSGVITAVRV------SPQNAREIAPIVVKAGAD--LLVIQGTLVS 167 (369)
T ss_pred HHHHHHHHHcCCCcc------ChHHHHHHHHHHHhcceEEEEec------CCcCHHHHHHHHHHCCCC--EEEEeccchh
Confidence 344444444454432 34445677888888652344555 234667888888888875 333
Q ss_pred cCC--CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 267 QPV--HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 267 eP~--~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
|=. ...++..+.++.+ ..++||..+. +.+.++.+++++.| +|++.
T Consensus 168 q~~~sg~~~p~~l~~~i~----~~~IPVI~G~-V~t~e~A~~~~~aG-aDgV~ 214 (369)
T TIGR01304 168 AEHVSTSGEPLNLKEFIG----ELDVPVIAGG-VNDYTTALHLMRTG-AAGVI 214 (369)
T ss_pred hhccCCCCCHHHHHHHHH----HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEE
Confidence 100 1235766777664 4689998744 89999999999976 78876
No 99
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=90.62 E-value=24 Score=36.95 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCCh--------hHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNL--------KEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~--------~~D~~~v~avr~~~~~~~l~vDaN~----~~~--~~~A-~~~~~ 253 (412)
+.+++...+..+.+.||..+.+--|... +.+.++|+++|+..++..|.+=..+ +|. +++. ..+++
T Consensus 25 ~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~ 104 (499)
T PRK12330 25 AMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVE 104 (499)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHH
Confidence 5688888888888899999998644211 4689999999999887766533321 343 3444 44777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC---CeEEe-CCCCCCHHHHH----HHHHcCCCCEEEecCCCCc-
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG---VSVAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG- 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~---ipIa~-dEs~~~~~~~~----~~i~~~a~d~v~ik~~~~G- 324 (412)
...+.++.+.-|=+|+.. .+.+....+..+.... .-|+- .-..++++.+. ++.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gidi~RIfd~lnd--v~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~G-ad~I~IkDta-Gl 180 (499)
T PRK12330 105 KSAENGMDVFRVFDALND--PRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMG-ADSICIKDMA-AL 180 (499)
T ss_pred HHHHcCCCEEEEEecCCh--HHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCc-cC
Confidence 778888876678888863 4444443333332212 12222 12356666543 344555 6888887554 6
Q ss_pred H--HHHHHHHHHHHH-c--CCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 V--LGALEIIEVVRA-S--GLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 i--t~~l~i~~~A~~-~--gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++...++ . ++++.+|+....+++ .+-.++|
T Consensus 181 l~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA--~An~laA 221 (499)
T PRK12330 181 LKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVT--LVSLMKA 221 (499)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcH--HHHHHHH
Confidence 3 345566555554 4 689999886544444 3444444
No 100
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=90.62 E-value=11 Score=36.58 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=75.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~ 247 (412)
+..++..+.+.++++.+.|-..+-|- .| .+.++-+++|++++++ .+++-| |.|+-.....++
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 44588888889999999998877762 23 1445667788888886 455444 568876667999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
|++.++...+.|-...|+|-|- +.+.++++.+ +.++|+..
T Consensus 168 AI~Ra~aY~eAGAD~ifi~~~~---~~~~i~~~~~----~~~~Pl~~ 207 (292)
T PRK11320 168 AIERAQAYVEAGADMIFPEAMT---ELEMYRRFAD----AVKVPILA 207 (292)
T ss_pred HHHHHHHHHHcCCCEEEecCCC---CHHHHHHHHH----hcCCCEEE
Confidence 9999999999887667998765 4566777764 45678744
No 101
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=90.54 E-value=7.6 Score=36.54 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCCC------CCCHH---HHHHHHHHHHcCCCCCce
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDANE------GYKPQ---EAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN~------~~~~~---~A~~~~~~l~~~~l~~~~ 264 (412)
+.++++.+.|..++=+-.- .-+|.++++.+.+.+ ..+-+.+|++. +|... +..++++++++.++. .+
T Consensus 88 ~~v~~ll~~G~~rViiGt~--av~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~-~i 164 (241)
T COG0106 88 EDVEALLDAGVARVIIGTA--AVKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA-HI 164 (241)
T ss_pred HHHHHHHHCCCCEEEEecc--eecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC-eE
Confidence 4566778889887764332 236778888888885 55788899986 67532 456788888887764 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc-CCCCEEEecCCCCc-H--HHHHHHH
Q 015161 265 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG-NLADVINIKLAKVG-V--LGALEII 332 (412)
Q Consensus 265 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~-~a~d~v~ik~~~~G-i--t~~l~i~ 332 (412)
| |=-+.--|++.+++|++ .+.+|+.+-=-+.+..|++.+-+. |...++.=+.-..| + .++++..
T Consensus 165 i~TdI~~DGtl~G~n~~l~~~l~~----~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~ 238 (241)
T COG0106 165 LYTDISRDGTLSGPNVDLVKELAE----AVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACV 238 (241)
T ss_pred EEEecccccccCCCCHHHHHHHHH----HhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHH
Confidence 2 33344457888898885 578999887788999999998887 66666665555555 3 4555443
No 102
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.48 E-value=4.4 Score=38.86 Aligned_cols=103 Identities=18% Similarity=0.192 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC------------CHHHHHHhHHHhhcccCCeEEe--CCCCCCHHHHH
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD------------DWEGLGHVSHIAKDKFGVSVAA--DESCRSLDDVK 305 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~------------d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~~~ 305 (412)
|..|+.++.+++++.|++.|+. +||=-++.. +.+.++++.+..+ .+.+++. .-...+..++.
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd--~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~ 89 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGID--YVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDYGNDDIDLLE 89 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCC--EEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECCCCCCHHHHH
Confidence 3457889999999999999985 999876532 1455666654211 1344433 33334567777
Q ss_pred HHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015161 306 KIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 306 ~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+.+.+ +|.+.+-...--+..++++++.|+++|+.+.++-+
T Consensus 90 ~a~~~g-v~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 130 (266)
T cd07944 90 PASGSV-VDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLM 130 (266)
T ss_pred HHhcCC-cCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEE
Confidence 766554 78876654333378899999999999999887643
No 103
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=90.47 E-value=5.7 Score=37.84 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=74.7
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC-----------C---CHHHHHHHHHHHHcCCC
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG-----------Y---KPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~-----------~---~~~~A~~~~~~l~~~~l 260 (412)
++++...|+..+ -+|...-++.+.++.+.+.++ .+.+.+|...+ | +.....+++++++++++
T Consensus 89 ~~~l~~~G~~~v--vigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~ 166 (258)
T PRK01033 89 AKKIFSLGVEKV--SINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGA 166 (258)
T ss_pred HHHHHHCCCCEE--EEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCC
Confidence 445556687754 455434456677777777643 47788896543 3 12235677788887765
Q ss_pred CCcee------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 261 TPVLF------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 261 ~~~~i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
. ..+ ++...-.|++.++++++ ..++||.+.=-+.+.+|+.++++...+|.+.
T Consensus 167 ~-~ii~~~i~~~G~~~G~d~~~i~~~~~----~~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 167 G-EILLNSIDRDGTMKGYDLELLKSFRN----ALKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred C-EEEEEccCCCCCcCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 4 222 23444457888888864 5789999988899999999999533466654
No 104
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=90.35 E-value=6.6 Score=38.08 Aligned_cols=102 Identities=16% Similarity=0.149 Sum_probs=74.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHh--CCCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAV--HPDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~~~~~~~ 247 (412)
+..++.++.+.++++.+.|-..+-|- .| .+.++=+++|++++++ .+++-| |.|+-.....++
T Consensus 83 GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 162 (285)
T TIGR02317 83 GFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDA 162 (285)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHH
Confidence 44578888888999999998877662 23 1455667889999886 345433 578887778999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
|++.++...+.|-...|+|-|.. .+.++++.+ +.++|+..
T Consensus 163 AI~Ra~ay~~AGAD~vfi~g~~~---~e~i~~~~~----~i~~Pl~~ 202 (285)
T TIGR02317 163 AIERAKAYVEAGADMIFPEALTS---LEEFRQFAK----AVKVPLLA 202 (285)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEE
Confidence 99999999998876679987654 455667764 45677743
No 105
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=90.16 E-value=7.4 Score=36.19 Aligned_cols=123 Identities=18% Similarity=0.205 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-C-cEEEEeCCCC------------CC---HHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-D-SSFILDANEG------------YK---PQEA 248 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~-~~l~vDaN~~------------~~---~~~A 248 (412)
++.+.+++ +++.+.|+..+ -+|...-.|.+.++.+.+.++ + +.+.+|.... |+ ..++
T Consensus 82 gi~~~~d~----~~~~~~G~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~ 155 (232)
T TIGR03572 82 GIRSLEDA----KKLLSLGADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDP 155 (232)
T ss_pred CCCCHHHH----HHHHHcCCCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCH
Confidence 34454443 33455687654 455444456677777777643 3 5667886542 32 3456
Q ss_pred HHHHHHHHcCCCCCceeec-----CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 249 VEVLEKLYEMGVTPVLFEQ-----PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEe-----P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++++.+++.++.-..+-. -.+..+++.++++++ ..++||.+.=.+.+.+++.+++....+|.+.+
T Consensus 156 ~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~----~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSD----AVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 7888888888764111111 122235777777764 56899988888899999999555445676644
No 106
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.15 E-value=24 Score=37.91 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeC---C-CCCC--HHHHH-HHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDA---N-EGYK--PQEAV-EVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~~~~~~l~vDa---N-~~~~--~~~A~-~~~~ 253 (412)
..+++...+..+.+.||..+.+--|. --+.+++|++.+|+..|+..+-+=. | =+|. +++.+ .+++
T Consensus 24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~ 103 (596)
T PRK14042 24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK 103 (596)
T ss_pred CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence 45677777888888999999977662 1257899999999998877664322 2 2343 44444 4888
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC----eEEe-CCCCCCHHHHHH----HHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAA-DESCRSLDDVKK----IVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~-dEs~~~~~~~~~----~i~~~a~d~v~ik~~~~G 324 (412)
...+.|+.+..+=+++. |.+.+..-.+..++ .+. -|+. .-..++++.+.+ +.+.| +|.+.+|=+- |
T Consensus 104 ~a~~~Gidv~Rifd~ln--d~~n~~~~i~~~k~-~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G-ad~I~IkDta-G 178 (596)
T PRK14042 104 LAVNNGVDVFRVFDALN--DARNLKVAIDAIKS-HKKHAQGAICYTTSPVHTLDNFLELGKKLAEMG-CDSIAIKDMA-G 178 (596)
T ss_pred HHHHcCCCEEEEcccCc--chHHHHHHHHHHHH-cCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCcc-c
Confidence 88888887677777775 33334332222222 232 2222 334677775544 34445 7888887554 6
Q ss_pred -HH--HHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -VL--GALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -it--~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++ .+.+++...+ +.++++.+|+....++ +.+..++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gl--a~an~laA 218 (596)
T PRK14042 179 LLTPTVTVELYAGLKQATGLPVHLHSHSTSGL--ASICHYEA 218 (596)
T ss_pred CCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCc--HHHHHHHH
Confidence 33 4555544444 4689999988654444 44444444
No 107
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=90.08 E-value=2.2 Score=42.83 Aligned_cols=99 Identities=18% Similarity=0.287 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC
Q 015161 217 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296 (412)
Q Consensus 217 ~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 296 (412)
++|-++++.+.+++-+ -+.+|..|+.+.-| +++++.+.+. -..+.|.+|
T Consensus 250 e~dK~rl~ll~~aGvd-vviLDSSqGnS~~q-iemik~iK~~----------------------------yP~l~ViaG- 298 (503)
T KOG2550|consen 250 DDDKERLDLLVQAGVD-VVILDSSQGNSIYQ-LEMIKYIKET----------------------------YPDLQIIAG- 298 (503)
T ss_pred cchhHHHHHhhhcCCc-EEEEecCCCcchhH-HHHHHHHHhh----------------------------CCCceeecc-
Confidence 5666777766666544 35677777776554 3444433321 112445444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEe-----------cCCCCc---HHHHHHHHHHHHHcCCcEEEccC
Q 015161 297 SCRSLDDVKKIVKGNLADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 297 s~~~~~~~~~~i~~~a~d~v~i-----------k~~~~G---it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++.+.++.+.+|++| +|++.+ +++-|| .|...+++++|+++|++++-.+-
T Consensus 299 NVVT~~qa~nLI~aG-aDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG 362 (503)
T KOG2550|consen 299 NVVTKEQAANLIAAG-ADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG 362 (503)
T ss_pred ceeeHHHHHHHHHcc-CceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC
Confidence 456777888999887 677653 555566 56778999999999999987554
No 108
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=90.06 E-value=12 Score=37.07 Aligned_cols=117 Identities=15% Similarity=0.295 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHcCC--CEEeEecC-CChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCc---
Q 015161 191 AEAAELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPV--- 263 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf--~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~--- 263 (412)
.+..+++.++++.|. ..+-+.+- .+.+.-.+.++.+|+.+|+..+++ |.. |.++|.... +.|+...
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~---t~e~a~~l~----~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG---TPEAVRELE----NAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC---CHHHHHHHH----HcCcCEEEEC
Confidence 344677888889866 88888765 344556677999999999988887 655 777765443 3444311
Q ss_pred ------eeecCC---CCCCH--HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 264 ------LFEQPV---HRDDW--EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 264 ------~iEeP~---~~~d~--~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+|++. ...|| ..++++.+ ...+||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~----~~~ipVIAdGGI~~~~Di~KaLa~G-A~aV~vG 230 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ATMVMIG 230 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHH----HcCCCEEEeCCCCCHHHHHHHHHhC-CCEEEec
Confidence 236443 23333 34556553 3579999999999999999999997 5777654
No 109
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.03 E-value=4.8 Score=39.92 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=71.0
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
..|+.++.+++++.|.+.|+. +||= +....+++.++++.+..+ +..+-+...=...+.++++.
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~--~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~-~~~~~~ll~pg~~~~~dl~~ 95 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVD--AIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVK-RAKVAVLLLPGIGTVHDLKA 95 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCC--EEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCC-CCEEEEEeccCccCHHHHHH
Confidence 456889999999999999985 9998 444567777777765422 22222223223457889988
Q ss_pred HHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEcc
Q 015161 307 IVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 307 ~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~ 346 (412)
+.+.+ +|.+++-.. +- ...+.+.+++|++.|..+...-
T Consensus 96 a~~~g-vd~iri~~~-~~e~d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 96 AYDAG-ARTVRVATH-CTEADVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHCC-CCEEEEEec-cchHHHHHHHHHHHHHcCCeEEEEE
Confidence 88876 788876432 33 5567899999999999886543
No 110
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=90.03 E-value=14 Score=34.68 Aligned_cols=170 Identities=24% Similarity=0.281 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCCh------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNL------KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP 262 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~------~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~ 262 (412)
+.++..+.+..+.+.|+..+-+-.+... +.+.+.++.+++.+++..+.+.+..+ .+.++.+.+.++.
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~------~~~i~~a~~~g~~- 89 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR------EKGIERALEAGVD- 89 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc------hhhHHHHHhCCcC-
Confidence 6677788888888889988887766544 67788899999987777776555443 3445555566653
Q ss_pred ceeecCCCCC--------------CHHHHHHhHHHhhcccCCeEEeCC-CC----CCHHHH----HHHHHcCCCCEEEec
Q 015161 263 VLFEQPVHRD--------------DWEGLGHVSHIAKDKFGVSVAADE-SC----RSLDDV----KKIVKGNLADVINIK 319 (412)
Q Consensus 263 ~~iEeP~~~~--------------d~~~~~~l~~~~~~~~~ipIa~dE-s~----~~~~~~----~~~i~~~a~d~v~ik 319 (412)
++-=+++.. +++...+..+.++ +.++.+...= .. .++..+ +.+.+.+ +|.+.+.
T Consensus 90 -~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~-~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~i~l~ 166 (265)
T cd03174 90 -EVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAK-EAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAG-ADEISLK 166 (265)
T ss_pred -EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEec
Confidence 333333333 2333323222222 3466665542 33 333333 3344445 7777776
Q ss_pred CCCCc-HH--HHHHHHHHHHH-cC-CcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 320 LAKVG-VL--GALEIIEVVRA-SG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 320 ~~~~G-it--~~l~i~~~A~~-~g-i~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
-+ .| .+ +..+++...++ .+ +++.+|+... .|++.+-.++|....+.++|
T Consensus 167 Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~--~gla~an~laA~~aG~~~id 220 (265)
T cd03174 167 DT-VGLATPEEVAELVKALREALPDVPLGLHTHNT--LGLAVANSLAALEAGADRVD 220 (265)
T ss_pred hh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCC--CChHHHHHHHHHHcCCCEEE
Confidence 54 36 33 45555555444 44 7777777533 33444444444333345554
No 111
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=89.98 E-value=8.4 Score=35.73 Aligned_cols=123 Identities=17% Similarity=0.238 Sum_probs=76.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-CcEEEEeCC------CCCC---HHHHHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-DSSFILDAN------EGYK---PQEAVEVLEKL 255 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~~~l~vDaN------~~~~---~~~A~~~~~~l 255 (412)
++.+.++ ++++.+.|... +=+|...-.+.+.++.+.+.++ .+.+.+|.. .+|. .....++++.+
T Consensus 82 GI~~~ed----~~~~~~~Ga~~--vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~ 155 (233)
T PRK00748 82 GIRSLET----VEALLDAGVSR--VIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRF 155 (233)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHH
Confidence 4445544 44555667654 4566544455556666666543 477788864 2441 22335567777
Q ss_pred HcCCCC-Ccee----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVT-PVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~-~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.+.. +... ++...--|++.++++++ .+++||.+.=-+.+.+|++++.+.+.+|.+.+
T Consensus 156 ~~~g~~~ii~~~~~~~g~~~G~d~~~i~~l~~----~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 156 EDAGVKAIIYTDISRDGTLSGPNVEATRELAA----AVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HhcCCCEEEEeeecCcCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 776543 1111 12222346787888864 56799999888999999999999886787754
No 112
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=89.97 E-value=8.1 Score=36.22 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=81.4
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCC-----------CCC---
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDAN-----------EGY--- 243 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN-----------~~~--- 243 (412)
|+....++.+.+++ +++.+.|...+ -+|...-.+.+.+..+.+.++ .+.+.+|+. .+|
T Consensus 73 pv~~~GGI~s~~d~----~~~l~~G~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~ 146 (243)
T cd04731 73 PLTVGGGIRSLEDA----RRLLRAGADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP 146 (243)
T ss_pred CEEEeCCCCCHHHH----HHHHHcCCceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee
Confidence 33444455666554 34445676654 456444455666766666543 478889865 234
Q ss_pred CHHHHHHHHHHHHcCCCCCceeec-------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQ-------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEe-------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
+..+..++++.+++.++. ++.= .....+++.++++.+ ..++||.+.=-+.+++++.++++...+|.+
T Consensus 147 ~~~~~~~~~~~l~~~G~d--~i~v~~i~~~g~~~g~~~~~i~~i~~----~~~~pvia~GGi~~~~di~~~l~~~g~dgv 220 (243)
T cd04731 147 TGLDAVEWAKEVEELGAG--EILLTSMDRDGTKKGYDLELIRAVSS----AVNIPVIASGGAGKPEHFVEAFEEGGADAA 220 (243)
T ss_pred cCCCHHHHHHHHHHCCCC--EEEEeccCCCCCCCCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHHHhCCCCEE
Confidence 245567888888887764 2221 122345777777764 568999998889999999999987557776
Q ss_pred Ee
Q 015161 317 NI 318 (412)
Q Consensus 317 ~i 318 (412)
.+
T Consensus 221 ~v 222 (243)
T cd04731 221 LA 222 (243)
T ss_pred EE
Confidence 65
No 113
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=89.77 E-value=16 Score=37.93 Aligned_cols=167 Identities=20% Similarity=0.269 Sum_probs=101.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEE---EeCC-CCCCH--HH-HHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI---LDAN-EGYKP--QE-AVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~---vDaN-~~~~~--~~-A~~~~~ 253 (412)
+.+++...+..+.+.||..+.+--|.. -+.++++++++|+..|+..|. .=.| =+|.. ++ ...|++
T Consensus 33 ~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~ 112 (468)
T PRK12581 33 SIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFIS 112 (468)
T ss_pred CHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHH
Confidence 467888888888888999999865521 247899999999987765543 2223 24543 44 345788
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EEe-CCCCCCHHH----HHHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDD----VKKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~----~~~~i~~~a~d~v~ik~~~~G 324 (412)
...+.|+.+..+=+.+. |.+.+....+..++ .+.- |+. +...++.+- ++++.+.| +|.+.++=+- |
T Consensus 113 ~a~~~Gidi~Rifd~ln--d~~n~~~ai~~ak~-~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~G-ad~I~IkDta-G 187 (468)
T PRK12581 113 LSAQNGIDVFRIFDALN--DPRNIQQALRAVKK-TGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMG-ADSICIKDMA-G 187 (468)
T ss_pred HHHHCCCCEEEEcccCC--CHHHHHHHHHHHHH-cCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 88888887677777775 45555554433332 2322 222 233444432 34455555 7888887654 6
Q ss_pred -HH--HHHHHHHHHHH-cCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -VL--GALEIIEVVRA-SGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -it--~~l~i~~~A~~-~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
++ .+.+++...++ .++++.+|+....+ ++.+..++|
T Consensus 188 ~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~G--lA~An~laA 227 (468)
T PRK12581 188 ILTPKAAKELVSGIKAMTNLPLIVHTHATSG--ISQMTYLAA 227 (468)
T ss_pred CcCHHHHHHHHHHHHhccCCeEEEEeCCCCc--cHHHHHHHH
Confidence 33 45555554444 46888888864444 444445544
No 114
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.73 E-value=8.9 Score=38.60 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec-------CC-CCC-CHHHHHHhHHHhhc
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ-------PV-HRD-DWEGLGHVSHIAKD 286 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe-------P~-~~~-d~~~~~~l~~~~~~ 286 (412)
++.-.++++++++.+ +.+.+-. ++.++.++++.+.+.++. +|.= -- ... ++..+.++.+
T Consensus 117 p~l~~~iv~~~~~~~--V~v~vr~----~~~~~~e~a~~l~eaGvd--~I~vhgrt~~~~h~~~~~~~~~i~~~ik---- 184 (368)
T PRK08649 117 PELITERIAEIRDAG--VIVAVSL----SPQRAQELAPTVVEAGVD--LFVIQGTVVSAEHVSKEGEPLNLKEFIY---- 184 (368)
T ss_pred HHHHHHHHHHHHhCe--EEEEEec----CCcCHHHHHHHHHHCCCC--EEEEeccchhhhccCCcCCHHHHHHHHH----
Confidence 334455666666642 3332222 234456666667666654 3331 11 111 4666666553
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC---------CC--cHHH---HHHHHHHHHHc-------CCcEEEc
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---------KV--GVLG---ALEIIEVVRAS-------GLNLMIG 345 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~---------~~--Git~---~l~i~~~A~~~-------gi~~~~~ 345 (412)
+.++||..+. +.+.++.+++++.| +|++.+-.. .. |+.. ..++.+.++++ +++++..
T Consensus 185 ~~~ipVIaG~-V~t~e~A~~l~~aG-AD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAd 262 (368)
T PRK08649 185 ELDVPVIVGG-CVTYTTALHLMRTG-AAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIAD 262 (368)
T ss_pred HCCCCEEEeC-CCCHHHHHHHHHcC-CCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEe
Confidence 3579998854 89999999999876 788855411 11 2211 22333333333 6898887
Q ss_pred cCcchHHHHHHHHHH
Q 015161 346 GMVETRLAMGFAGHL 360 (412)
Q Consensus 346 ~~~es~i~~~a~~hl 360 (412)
+-+.++-..+.++.+
T Consensus 263 GGI~~~~diakAlal 277 (368)
T PRK08649 263 GGIGTSGDIAKAIAC 277 (368)
T ss_pred CCCCCHHHHHHHHHc
Confidence 766555444444433
No 115
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.65 E-value=8.3 Score=37.33 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=84.2
Q ss_pred HHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc
Q 015161 157 IDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS 233 (412)
Q Consensus 157 ~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~ 233 (412)
....++..++|+.-.|.... + .+.+.++.+.||+.+-+.-. .++++.++..+.+.+. . -++
T Consensus 66 ~~~~A~~~~vPV~lHLDH~~------------~----~e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv 129 (283)
T PRK07998 66 VKRHADKMDVPVSLHLDHGK------------T----FEDVKQAVRAGFTSVMIDGAALPFEENIAFTKEAVDFAKSYGV 129 (283)
T ss_pred HHHHHHHCCCCEEEECcCCC------------C----HHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 34456676777654443211 2 23445567889999999765 3566777776666652 1 121
Q ss_pred ----EEE-E----eC----CCCC-CHHHHHHHHHHHHc----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccC
Q 015161 234 ----SFI-L----DA----NEGY-KPQEAVEVLEKLYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG 289 (412)
Q Consensus 234 ----~l~-v----Da----N~~~-~~~~A~~~~~~l~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ 289 (412)
.|- + |. ...| ++++|.+|+++..- .|+ |-. |.-|++-++++++ .++
T Consensus 130 ~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~---Y~~---p~l~~~~l~~I~~----~~~ 199 (283)
T PRK07998 130 PVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL---EDI---PRIDIPLLKRIAE----VSP 199 (283)
T ss_pred EEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC---CCC---CCcCHHHHHHHHh----hCC
Confidence 111 1 11 1224 59999999987632 232 322 5668888998875 578
Q ss_pred CeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 290 VSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 290 ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 200 vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 229 (283)
T PRK07998 200 VPLVIHGGSGIPPEILRSFVNYKVA-KVNIA 229 (283)
T ss_pred CCEEEeCCCCCCHHHHHHHHHcCCc-EEEEC
Confidence 99876 5677777899999998854 44554
No 116
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=89.63 E-value=14 Score=32.73 Aligned_cols=130 Identities=10% Similarity=0.084 Sum_probs=84.1
Q ss_pred eeeceeecCCC----HHHHHHHHHHHHHcCCCEEeEecCC----C--hhHHHHHHHHHHHhC-CCcEEEEeCCCCC--CH
Q 015161 179 ITTDITIPIVS----PAEAAELASKYRKQGFTTLKLKVGK----N--LKEDIEVLRAIRAVH-PDSSFILDANEGY--KP 245 (412)
Q Consensus 179 i~~~~~i~~~~----~~~~~~~~~~~~~~Gf~~~KiKvG~----~--~~~D~~~v~avr~~~-~~~~l~vDaN~~~--~~ 245 (412)
+|+...++..+ .++..+.++++.+.|...+.+-... + .+.-.+.++++++.. .+..+++..+-.+ ++
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~ 128 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTA 128 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCH
Confidence 44444444444 6788889999999999999986431 1 334456677887763 5688888776433 57
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
++..+..+.+++.++. +|-..... .+++.++++.+... .++||..--...++..+..++..|+
T Consensus 129 ~~~~~~~~~~~~~g~~--~iK~~~~~~~~~~~~~~~~~i~~~~~--~~~~v~~~gg~~~~~~~~~~~~~Ga 195 (201)
T cd00945 129 DEIAKAARIAAEAGAD--FIKTSTGFGGGGATVEDVKLMKEAVG--GRVGVKAAGGIKTLEDALAAIEAGA 195 (201)
T ss_pred HHHHHHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHhcc--cCCcEEEECCCCCHHHHHHHHHhcc
Confidence 7767777777777764 77765542 26777777764221 1456644333346778888888764
No 117
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=89.58 E-value=13 Score=36.86 Aligned_cols=150 Identities=24% Similarity=0.266 Sum_probs=100.3
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------ChhHHHHHHHHHHHhC--C-CcEEEEeCC
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------NLKEDIEVLRAIRAVH--P-DSSFILDAN 240 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------~~~~D~~~v~avr~~~--~-~~~l~vDaN 240 (412)
|.-..++..+|+.+.+.++-....+ ..|-+.+|. +++---+.|+++++.. | .++|++
T Consensus 75 PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI--- 150 (358)
T KOG2335|consen 75 PLIVQFGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRI--- 150 (358)
T ss_pred ceEEEEcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEe---
Confidence 4455677789998877776665666 788888772 2333345677777752 3 345554
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCcee-------ec--C-CCCCCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHH
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLF-------EQ--P-VHRDDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~i-------Ee--P-~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~ 309 (412)
.=+.++.+++++.+++.|.. |+ || + .++-||+.++.+++ ... +||.+.-++.++.|..++++
T Consensus 151 -~~d~~kTvd~ak~~e~aG~~--~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNGnI~~~~d~~~~~~ 223 (358)
T KOG2335|consen 151 -FVDLEKTVDYAKMLEDAGVS--LLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANGNILSLEDVERCLK 223 (358)
T ss_pred -cCcHHHHHHHHHHHHhCCCc--EEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeCCcCcHHHHHHHHH
Confidence 24567888999999998864 44 22 2 45668998998875 445 99999999999999999998
Q ss_pred cCCCCEEEec--------CC---CCcH--HH-HHHHHHHHHHcCC
Q 015161 310 GNLADVINIK--------LA---KVGV--LG-ALEIIEVVRASGL 340 (412)
Q Consensus 310 ~~a~d~v~ik--------~~---~~Gi--t~-~l~i~~~A~~~gi 340 (412)
.-.+|+|..- +. ..|. .+ ..+-..+|.+++-
T Consensus 224 ~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 224 YTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred HhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCC
Confidence 5456776421 11 1121 22 3456788888873
No 118
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=89.50 E-value=17 Score=33.42 Aligned_cols=141 Identities=14% Similarity=0.222 Sum_probs=93.1
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+-|++.+.+..-. ....+.++.+++.+++ .+.+=+..-.+.+++... .+.|.. |
T Consensus 16 ~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~--~~~~~~i~~l~~~~~~-~~~iGaGTV~~~~~~~~a----~~aGA~--f 86 (206)
T PRK09140 16 LRGITPDEALAHVGALIEAGFRAIEIPLNS--PDPFDSIAALVKALGD-RALIGAGTVLSPEQVDRL----ADAGGR--L 86 (206)
T ss_pred EeCCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHcCC-CcEEeEEecCCHHHHHHH----HHcCCC--E
Confidence 344578889999999999999999998643 2455678888887653 366777777888876433 335543 6
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC-CCcHHHHHHHHHHHHHc--CCc
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA-KVGVLGALEIIEVVRAS--GLN 341 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~-~~Git~~l~i~~~A~~~--gi~ 341 (412)
+=-|... .+ ..+.+. ..++++..+ +.++.++.+..+.| +|++.+=+. .+|+.... .+..-. +++
T Consensus 87 ivsp~~~--~~-v~~~~~----~~~~~~~~G--~~t~~E~~~A~~~G-ad~vk~Fpa~~~G~~~l~---~l~~~~~~~ip 153 (206)
T PRK09140 87 IVTPNTD--PE-VIRRAV----ALGMVVMPG--VATPTEAFAALRAG-AQALKLFPASQLGPAGIK---ALRAVLPPDVP 153 (206)
T ss_pred EECCCCC--HH-HHHHHH----HCCCcEEcc--cCCHHHHHHHHHcC-CCEEEECCCCCCCHHHHH---HHHhhcCCCCe
Confidence 6656543 32 223221 457888887 89999999999887 699876332 24533333 333333 588
Q ss_pred EEEccC
Q 015161 342 LMIGGM 347 (412)
Q Consensus 342 ~~~~~~ 347 (412)
++.-+-
T Consensus 154 vvaiGG 159 (206)
T PRK09140 154 VFAVGG 159 (206)
T ss_pred EEEECC
Confidence 887553
No 119
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=89.48 E-value=16 Score=34.96 Aligned_cols=135 Identities=19% Similarity=0.249 Sum_probs=83.5
Q ss_pred eceeecCCCHHHHHHHHHHHHHcCCCEEeEecC----------------------CChhHHHHHHHHHHHhCCC--cEEE
Q 015161 181 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPD--SSFI 236 (412)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~D~~~v~avr~~~~~--~~l~ 236 (412)
.|.+.+.-+++...+.++.+.+.|-..+.+-+- ..+++-.+.++.+|+.+.+ +-||
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm 100 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLM 100 (265)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356666667777788888788888888887653 1245566778888876655 4455
Q ss_pred EeCCCCC------------------------CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HH---------------
Q 015161 237 LDANEGY------------------------KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EG--------------- 276 (412)
Q Consensus 237 vDaN~~~------------------------~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~--------------- 276 (412)
.=.|--| -++++-++.+.++++++.+.++=-|..+++. +.
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~ 180 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRM 180 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecc
Confidence 5555422 3567777888888888877777777765432 11
Q ss_pred ------------HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 277 ------------LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 277 ------------~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
..++-+.+|..+++||+.|--+.++++++++.+. +|++.
T Consensus 181 GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~~--ADGVI 231 (265)
T COG0159 181 GVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAEA--ADGVI 231 (265)
T ss_pred cccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHHh--CCeEE
Confidence 1222222333455666666666666666666653 45543
No 120
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.98 E-value=19 Score=33.31 Aligned_cols=143 Identities=13% Similarity=0.215 Sum_probs=99.2
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
+...++++..+.++.+.+-|++.+.+-+-. ..-.+.++++++.+++. .+.+=+..-.|.+++.+. .+.|..
T Consensus 19 ir~~~~~~a~~~~~al~~~Gi~~iEit~~~--~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a----~~aGA~-- 90 (213)
T PRK06552 19 VRGESKEEALKISLAVIKGGIKAIEVTYTN--PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLA----ILAGAQ-- 90 (213)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCC--ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHH----HHcCCC--
Confidence 344578889999999999999999998852 34567888888876542 588888999999987544 346653
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHc-CCc
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRAS-GLN 341 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~-gi~ 341 (412)
|+=-|.-..+. .+.++ +.++|+.-| +.|+.++.++.+.| +|++.+=+.. .|+.... .+..-+ +++
T Consensus 91 FivsP~~~~~v---~~~~~----~~~i~~iPG--~~T~~E~~~A~~~G-ad~vklFPa~~~G~~~ik---~l~~~~p~ip 157 (213)
T PRK06552 91 FIVSPSFNRET---AKICN----LYQIPYLPG--CMTVTEIVTALEAG-SEIVKLFPGSTLGPSFIK---AIKGPLPQVN 157 (213)
T ss_pred EEECCCCCHHH---HHHHH----HcCCCEECC--cCCHHHHHHHHHcC-CCEEEECCcccCCHHHHH---HHhhhCCCCE
Confidence 77777654443 33332 468898886 56899999999877 6999885533 3533322 233334 488
Q ss_pred EEEccCc
Q 015161 342 LMIGGMV 348 (412)
Q Consensus 342 ~~~~~~~ 348 (412)
+++.+-+
T Consensus 158 ~~atGGI 164 (213)
T PRK06552 158 VMVTGGV 164 (213)
T ss_pred EEEECCC
Confidence 8875543
No 121
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=88.95 E-value=16 Score=35.05 Aligned_cols=92 Identities=13% Similarity=0.065 Sum_probs=58.0
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------------ChhHHHHHHHHHHHhC-CCcEEE
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------------NLKEDIEVLRAIRAVH-PDSSFI 236 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------------~~~~D~~~v~avr~~~-~~~~l~ 236 (412)
-.|.+.+.-+.+...+.+..+.+.|-..+.+-+-. ++++-.+.++++|+.. -.+-+|
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm 97 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF 97 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE
Confidence 34666666677777777777778888888776531 2334455666666431 113366
Q ss_pred EeCCCC------------------------CCHHHHHHHHHHHHcCCCCCceeecCCCC
Q 015161 237 LDANEG------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHR 271 (412)
Q Consensus 237 vDaN~~------------------------~~~~~A~~~~~~l~~~~l~~~~iEeP~~~ 271 (412)
.=.|-- ...+++-++.+.+.++++.+.++=-|..+
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 666631 24567778888888888876676666654
No 122
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=88.87 E-value=8.8 Score=36.12 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC------CCCC--HHHHHHHHHHHHcCCCCCcee
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN------EGYK--PQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN------~~~~--~~~A~~~~~~l~~~~l~~~~i 265 (412)
+.++++...|.. |+-+|...-.|.+.++.+-+.+ ..+.+.+|.. .+|+ ..+..++++.+++.++. .++
T Consensus 88 edv~~~l~~Ga~--kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~-~ii 164 (241)
T PRK14024 88 ESLEAALATGCA--RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS-RYV 164 (241)
T ss_pred HHHHHHHHCCCC--EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC-EEE
Confidence 445566777887 4455644445667777766654 3455667763 2564 23567788888888764 122
Q ss_pred ------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEe
Q 015161 266 ------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINI 318 (412)
Q Consensus 266 ------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~i 318 (412)
++-....|++.++++.+ ...+||.+.=-+.+.+|+.++.+. ..+|.+.+
T Consensus 165 v~~~~~~g~~~G~d~~~i~~i~~----~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~i 221 (241)
T PRK14024 165 VTDVTKDGTLTGPNLELLREVCA----RTDAPVVASGGVSSLDDLRALAELVPLGVEGAIV 221 (241)
T ss_pred EEeecCCCCccCCCHHHHHHHHh----hCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEE
Confidence 44444457888888874 568999998889999999988642 24666554
No 123
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=88.82 E-value=18 Score=38.04 Aligned_cols=109 Identities=17% Similarity=0.329 Sum_probs=71.9
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC----CCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHH
Q 015161 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH----RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 234 ~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~----~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 308 (412)
+|+|-+--+-++++ ++.++.|-+.++. .||=-.. ...++..+++++ .. +++|.++ ++.+.++.+.++
T Consensus 229 rL~Vgaavg~~~~~-~~~~~~l~~ag~d--~i~id~a~G~s~~~~~~i~~ik~----~~~~~~v~aG-~V~t~~~a~~~~ 300 (495)
T PTZ00314 229 QLLVGAAISTRPED-IERAAALIEAGVD--VLVVDSSQGNSIYQIDMIKKLKS----NYPHVDIIAG-NVVTADQAKNLI 300 (495)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHCCCC--EEEEecCCCCchHHHHHHHHHHh----hCCCceEEEC-CcCCHHHHHHHH
Confidence 45554443444554 7888888888874 7773332 122345666653 33 6899998 889999999999
Q ss_pred HcCCCCEEEecCC-----------CCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 309 KGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 309 ~~~a~d~v~ik~~-----------~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+.| +|++.+-.. -+| ++...++.+.|+++|++++..+-..++
T Consensus 301 ~aG-ad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~ 356 (495)
T PTZ00314 301 DAG-ADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNS 356 (495)
T ss_pred HcC-CCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCH
Confidence 988 688865321 134 344567888999999999994433333
No 124
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.58 E-value=7.1 Score=36.20 Aligned_cols=121 Identities=18% Similarity=0.273 Sum_probs=77.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCC------CC---CHHHHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANE------GY---KPQEAVEVLEK 254 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~------~~---~~~~A~~~~~~ 254 (412)
++.++++ ++++.+.|... +=+|...-.|.+.++.+.+.++ .+.+.+|... +| +..+..++++.
T Consensus 81 gI~~~e~----~~~~~~~Gad~--vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd04732 81 GIRSLED----IERLLDLGVSR--VIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKR 154 (234)
T ss_pred CcCCHHH----HHHHHHcCCCE--EEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHH
Confidence 4455544 45556678554 4567555567777888877743 4666777542 23 13345667777
Q ss_pred HHcCCCCCceeecCC------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 255 LYEMGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 255 l~~~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++.+.. .++=-.+ ...|++.++++++ .+++||...--+.+.+++.++++.| +|.+.+
T Consensus 155 ~~~~ga~-~iii~~~~~~g~~~g~~~~~i~~i~~----~~~ipvi~~GGi~~~~di~~~~~~G-a~gv~v 218 (234)
T cd04732 155 FEELGVK-AIIYTDISRDGTLSGPNFELYKELAA----ATGIPVIASGGVSSLDDIKALKELG-VAGVIV 218 (234)
T ss_pred HHHcCCC-EEEEEeecCCCccCCCCHHHHHHHHH----hcCCCEEEecCCCCHHHHHHHHHCC-CCEEEE
Confidence 8777653 2222223 3346777888764 5689999999999999999999875 566544
No 125
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=88.43 E-value=18 Score=35.74 Aligned_cols=134 Identities=17% Similarity=0.230 Sum_probs=83.7
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------Ch-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------NL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------~~-~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
+|+..++...++++..+.++.+.+.|+..+-+.++. +. +.-.+.++++++.. ++.+.+=-+..+ .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p~~--~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV-SIPVAVKLSPYF--SN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc-CCcEEEEeCCCc--hh
Confidence 455566666778888888888888899999987651 11 11235567777753 355665544434 34
Q ss_pred HHHHHHHHHcCCCCCceeec--CCC--CCCH------------------HHHHHhHHHhhcccCCeEEeCCCCCCHHHHH
Q 015161 248 AVEVLEKLYEMGVTPVLFEQ--PVH--RDDW------------------EGLGHVSHIAKDKFGVSVAADESCRSLDDVK 305 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEe--P~~--~~d~------------------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~ 305 (412)
...+++.+++.++. .|-- -+. .-|+ ..++.+.+ +++..++||.+.=-+.+.+|+.
T Consensus 179 ~~~~a~~l~~~G~d--gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~-~~~~~~ipIig~GGI~s~~Da~ 255 (334)
T PRK07565 179 LANMAKRLDAAGAD--GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAI-LSGRVGADLAATTGVHDAEDVI 255 (334)
T ss_pred HHHHHHHHHHcCCC--eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHH-HHhhcCCCEEEECCCCCHHHHH
Confidence 55677788877653 3311 000 0111 11222222 2345689999988899999999
Q ss_pred HHHHcCCCCEEEec
Q 015161 306 KIVKGNLADVINIK 319 (412)
Q Consensus 306 ~~i~~~a~d~v~ik 319 (412)
+++..| +|.+|+=
T Consensus 256 e~l~aG-A~~V~v~ 268 (334)
T PRK07565 256 KMLLAG-ADVVMIA 268 (334)
T ss_pred HHHHcC-CCceeee
Confidence 999877 7888775
No 126
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=88.02 E-value=16 Score=33.75 Aligned_cols=115 Identities=19% Similarity=0.203 Sum_probs=82.8
Q ss_pred HHHHHHHHhC-CCcEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCC
Q 015161 221 EVLRAIRAVH-PDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298 (412)
Q Consensus 221 ~~v~avr~~~-~~~~l~vDaN~~~~~~~A~~~~~~l~~~-~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 298 (412)
+.++.+++.. ..+.+-++ +.+.++.++-++.|.+. +. .+||=|+..+-++..++|.+ .++++... .+
T Consensus 41 ~~~~~i~~~~~~~v~~qv~---~~~~e~~i~~a~~l~~~~~~--~~iKIP~T~~gl~ai~~L~~-----~gi~v~~T-~V 109 (211)
T cd00956 41 AVLKEICEIIDGPVSAQVV---STDAEGMVAEARKLASLGGN--VVVKIPVTEDGLKAIKKLSE-----EGIKTNVT-AI 109 (211)
T ss_pred HHHHHHHHhcCCCEEEEEE---eCCHHHHHHHHHHHHHhCCC--EEEEEcCcHhHHHHHHHHHH-----cCCceeeE-Ee
Confidence 4566666653 34555565 46788888888887765 42 59999988755555555542 37888766 47
Q ss_pred CCHHHHHHHHHcCCCCEEEecCCCC------cHHHHHHHHHHHHHcCCc---EEEccC
Q 015161 299 RSLDDVKKIVKGNLADVINIKLAKV------GVLGALEIIEVVRASGLN---LMIGGM 347 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~v~ik~~~~------Git~~l~i~~~A~~~gi~---~~~~~~ 347 (412)
++..+...+++.| ++++.|=+.++ |+.-..++.++++.+|++ ++.|.+
T Consensus 110 ~s~~Qa~~Aa~AG-A~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r 166 (211)
T cd00956 110 FSAAQALLAAKAG-ATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIR 166 (211)
T ss_pred cCHHHHHHHHHcC-CCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccC
Confidence 8999999999988 58899888883 355677899999999988 666655
No 127
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=87.82 E-value=4.8 Score=40.09 Aligned_cols=122 Identities=10% Similarity=0.094 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC-C---------ChhHHHHHHHHHHHhCC----CcEEEEeCCCCCCHHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG-K---------NLKEDIEVLRAIRAVHP----DSSFILDANEGYKPQEAVEVLEK 254 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG-~---------~~~~D~~~v~avr~~~~----~~~l~vDaN~~~~~~~A~~~~~~ 254 (412)
+.++..+.+++.. .+...+-+-++ + +.+.-.+.+++||++.. ++.+.+=-.-.++.++..++++.
T Consensus 155 ~~~d~~~~~~~~~-~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~ 233 (344)
T PRK05286 155 AVDDYLICLEKLY-PYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADL 233 (344)
T ss_pred CHHHHHHHHHHHH-hhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHH
Confidence 4577777777753 36788888775 1 23344567888888643 46777766666888888899999
Q ss_pred HHcCCCCCceee------------cCC--------C-----CCCHHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHH
Q 015161 255 LYEMGVTPVLFE------------QPV--------H-----RDDWEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 255 l~~~~l~~~~iE------------eP~--------~-----~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~ 307 (412)
+++.++. .|. .+. + +-.++..++++ ++. ++||.+-=-+.+.+|+.++
T Consensus 234 l~~~Gad--gi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~----~~~~~~ipIig~GGI~s~eda~e~ 307 (344)
T PRK05286 234 ALEHGID--GVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLY----KELGGRLPIIGVGGIDSAEDAYEK 307 (344)
T ss_pred HHHhCCc--EEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHH----HHhCCCCCEEEECCCCCHHHHHHH
Confidence 9887653 221 110 0 00122333333 344 6899888889999999999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
+..| +|.+|+
T Consensus 308 l~aG-Ad~V~v 317 (344)
T PRK05286 308 IRAG-ASLVQI 317 (344)
T ss_pred HHcC-CCHHHH
Confidence 9876 677755
No 128
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.80 E-value=21 Score=32.94 Aligned_cols=109 Identities=15% Similarity=0.243 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCEEeEecCC--Ch--hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-----
Q 015161 195 ELASKYRKQGFTTLKLKVGK--NL--KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF----- 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--~~--~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i----- 265 (412)
++++++.+.|-..+=+-... .+ +...+.++.+++. +++.++++.+ +.+++. .+.+.+.. |+
T Consensus 79 ~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~---t~ee~~----~a~~~G~d--~i~~~~~ 148 (221)
T PRK01130 79 KEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCS---TLEEGL----AAQKLGFD--FIGTTLS 148 (221)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCC---CHHHHH----HHHHcCCC--EEEcCCc
Confidence 44566778898866654431 12 4455677788776 7888888775 566653 34455542 33
Q ss_pred --ecC---CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 --EQP---VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 --EeP---~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.. ....+++.++++++ ..++||...--+.+.+++.++++.| +|++.+
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~----~~~iPvia~GGI~t~~~~~~~l~~G-adgV~i 201 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLK----AVGCPVIAEGRINTPEQAKKALELG-AHAVVV 201 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHH----hCCCCEEEECCCCCHHHHHHHHHCC-CCEEEE
Confidence 111 12334566666654 4589999988999999999999988 788755
No 129
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=87.80 E-value=17 Score=35.33 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=70.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~~--~~~~l--~vDaN~~~~~~~ 247 (412)
+..++.++.+.++++.+.|...+-|- .| .+.++-+++|++++++- +++-| |.|+......++
T Consensus 87 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~de 166 (294)
T TIGR02319 87 GYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDE 166 (294)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHH
Confidence 34455557778889999998887762 22 13455577888888863 45443 679987778999
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
|++.++...+.|-...|+|-|.. .+.++++.+ ..+.|+
T Consensus 167 aI~Ra~aY~eAGAD~ifi~~~~~---~~ei~~~~~----~~~~P~ 204 (294)
T TIGR02319 167 AIRRSREYVAAGADCIFLEAMLD---VEEMKRVRD----EIDAPL 204 (294)
T ss_pred HHHHHHHHHHhCCCEEEecCCCC---HHHHHHHHH----hcCCCe
Confidence 99999999998876679987644 455677765 345565
No 130
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=87.31 E-value=6.5 Score=37.94 Aligned_cols=100 Identities=19% Similarity=0.195 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCC---CHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD---DWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~---d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ 317 (412)
.++.+.+..+++..++.+- |..|+=--... .++.+....+.+.++.++||++.- ...+.+.+.++++.| ++-+.
T Consensus 20 ~~n~e~~~avi~AAe~~~s-PvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~G-ftSVM 97 (276)
T cd00947 20 INNLETLKAILEAAEETRS-PVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAG-FSSVM 97 (276)
T ss_pred eCCHHHHHHHHHHHHHhCC-CEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CCEEE
Confidence 3455555555555555542 33443221111 122233333333346789999864 566899999999998 89999
Q ss_pred ecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 318 IKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 318 ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
+|.+..= +..++++.++|+++|+.+-
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VE 127 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVE 127 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 9988863 6679999999999999873
No 131
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=87.31 E-value=7.4 Score=37.74 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=48.1
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 71 TTYNMPLALHLDHHESLDDIRRKVHAG-VRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999874 566899999999987 789999988864 6679999999999999873
No 132
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=87.24 E-value=6.1 Score=37.80 Aligned_cols=103 Identities=21% Similarity=0.342 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--CC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC---CCE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL---ADV 315 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a---~d~ 315 (412)
.|+.++.+++++.|.+.|+. .||= |. +++|++..+.+.+. ..++.+.+= .-.+..++.++.+.+. +|.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~--~iEvg~~~~~~~~~~~~~~l~~~---~~~~~~~~l-~r~~~~~v~~a~~~~~~~~~~~ 89 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVD--VIEAGFPAASPGDFEAVKRIARE---VLNAEICGL-ARAVKKDIDAAAEALKPAKVDR 89 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHh---CCCCEEEEE-ccCCHhhHHHHHHhCCCCCCCE
Confidence 56889999999999999985 8997 54 45677777777542 234555421 1134677888777653 677
Q ss_pred EEecCC----------CCc----HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 316 INIKLA----------KVG----VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 316 v~ik~~----------~~G----it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+.+=.. ..+ +....++++.|+++|+.+.++++..+
T Consensus 90 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 90 IHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred EEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 766321 111 34466789999999999998877543
No 133
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=87.24 E-value=30 Score=33.58 Aligned_cols=139 Identities=13% Similarity=0.097 Sum_probs=84.2
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHc---CCCEEeEecC-C----------ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQ---GFTTLKLKVG-K----------NLKEDIEVLRAIRAVHPDSSFILDANEGYK 244 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~---Gf~~~KiKvG-~----------~~~~D~~~v~avr~~~~~~~l~vDaN~~~~ 244 (412)
.|+..++... +++..+.+++..+. |...|-+-++ + +++.-.+.++++++.. ++.+.+--.-.|+
T Consensus 92 ~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~ 169 (294)
T cd04741 92 KPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYTD 169 (294)
T ss_pred CeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCCC
Confidence 3555666555 78887777776664 6889998887 1 2344445567777653 2445555444567
Q ss_pred HHHHHHHHHHHHcC--CCCC------------cee--ecCCC--CC----------CHHHHHHhHHHhhccc--CCeEEe
Q 015161 245 PQEAVEVLEKLYEM--GVTP------------VLF--EQPVH--RD----------DWEGLGHVSHIAKDKF--GVSVAA 294 (412)
Q Consensus 245 ~~~A~~~~~~l~~~--~l~~------------~~i--EeP~~--~~----------d~~~~~~l~~~~~~~~--~ipIa~ 294 (412)
.++..++++.+.+. ++.- .-+ +.|.- .. .+..++.+++ ++++. ++||.+
T Consensus 170 ~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~-~~~~~~~~ipIig 248 (294)
T cd04741 170 PAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRT-FRRLLPSEIQIIG 248 (294)
T ss_pred HHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHH-HHHhcCCCCCEEE
Confidence 66666777777766 2210 011 22211 11 2233433332 23345 499999
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
-=-+.+.+|+.+++..| +|.+|+=-.
T Consensus 249 ~GGI~s~~da~e~l~aG-A~~Vqv~ta 274 (294)
T cd04741 249 VGGVLDGRGAFRMRLAG-ASAVQVGTA 274 (294)
T ss_pred eCCCCCHHHHHHHHHcC-CCceeEchh
Confidence 88899999999999976 688887544
No 134
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=87.10 E-value=7.2 Score=37.75 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=46.7
Q ss_pred cccC-CeEEeC-CCCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFG-VSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~-ipIa~d-Es~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.+ +||+.. ....+++.++++++.| ++.+++|..... +..+.++.++|+.+|+.+.
T Consensus 70 ~~~~~vpv~lhlDH~~~~e~i~~ai~~G-f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve 132 (282)
T TIGR01859 70 ERMSIVPVALHLDHGSSYESCIKAIKAG-FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVE 132 (282)
T ss_pred HHCCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3567 999987 4566788899999887 799999998876 4458899999999998765
No 135
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=87.03 E-value=4.7 Score=37.12 Aligned_cols=71 Identities=23% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeec---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++++..++...+.+++.+.|+|. ...+-+.+-.+++++ .+++|+..|--+.+.++++++++.+ +|.+.+
T Consensus 131 ~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~----~~~~Pv~vGGGIrs~e~a~~l~~~G-AD~VVV 204 (205)
T TIGR01769 131 NKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKK----ASGIPLIVGGGIRSPEIAYEIVLAG-ADAIVT 204 (205)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHH----hhCCCEEEeCCCCCHHHHHHHHHcC-CCEEEe
Confidence 5789999999999988988789998 333345566666654 5689999999999999999998877 687754
No 136
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=87.00 E-value=8.9 Score=38.10 Aligned_cols=101 Identities=16% Similarity=0.130 Sum_probs=70.6
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeec--------------CCCCCCHHHHHHhHHHhhcccCCeEE--eCCCCCCHHH
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQ--------------PVHRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDD 303 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEe--------------P~~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~ 303 (412)
+..|+.++.+++++.|.+.|+. .||= +....+++.++.+++. ..+..++ ..=...+..+
T Consensus 19 ~~~f~~~~~~~i~~~L~~aGv~--~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~---~~~~~~~~ll~pg~~~~~d 93 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVP--VIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV---VKQAKIAALLLPGIGTVDD 93 (337)
T ss_pred CCccCHHHHHHHHHHHHHcCCC--EEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh---CCCCEEEEEeccCcccHHH
Confidence 3456889999999999999985 8987 1223456667776542 2234544 3333457889
Q ss_pred HHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 304 VKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 304 ~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++++.+.+ +|.+.+-. .+. ...+.+.+++|+++|+.+...-+
T Consensus 94 l~~a~~~g-vd~iri~~-~~~e~~~~~~~i~~ak~~G~~v~~~l~ 136 (337)
T PRK08195 94 LKMAYDAG-VRVVRVAT-HCTEADVSEQHIGLARELGMDTVGFLM 136 (337)
T ss_pred HHHHHHcC-CCEEEEEE-ecchHHHHHHHHHHHHHCCCeEEEEEE
Confidence 99888876 78877643 334 56688999999999999876443
No 137
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=86.79 E-value=25 Score=32.28 Aligned_cols=142 Identities=15% Similarity=0.252 Sum_probs=99.6
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+.. +.|-. |
T Consensus 14 lr~~~~e~a~~~~~al~~~Gi~~iEit~~t--~~a~~~i~~l~~~~~~--~~vGAGTVl~~~~a~~a~----~aGA~--F 83 (204)
T TIGR01182 14 IRIDDVDDALPLAKALIEGGLRVLEVTLRT--PVALDAIRLLRKEVPD--ALIGAGTVLNPEQLRQAV----DAGAQ--F 83 (204)
T ss_pred EecCCHHHHHHHHHHHHHcCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEEEEeCCCHHHHHHHH----HcCCC--E
Confidence 344578899999999999999999998853 4556778888888875 777788889999875543 46653 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+ ..+.++ +.++|..-| +.|+.++..+++.| +|++.+=|.- .| ..-...+..-- -++++
T Consensus 84 ivsP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vKlFPA~~~GG~~yikal~~pl--p~i~~ 151 (204)
T TIGR01182 84 IVSPGLTPE---LAKHAQ----DHGIPIIPG--VATPSEIMLALELG-ITALKLFPAEVSGGVKMLKALAGPF--PQVRF 151 (204)
T ss_pred EECCCCCHH---HHHHHH----HcCCcEECC--CCCHHHHHHHHHCC-CCEEEECCchhcCCHHHHHHHhccC--CCCcE
Confidence 866654322 333332 468888884 78999999999988 5888777765 44 33222222222 37888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 152 ~ptGGV 157 (204)
T TIGR01182 152 CPTGGI 157 (204)
T ss_pred EecCCC
Confidence 887654
No 138
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=86.77 E-value=7.4 Score=37.64 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=46.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+.+.+.++++.| ++.+|+|-.... +..++++.++|+++|+++-
T Consensus 71 ~~~~vpv~lHlDH~~~~e~i~~Al~~G-~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ve 132 (281)
T PRK06806 71 KQAKVPVAVHFDHGMTFEKIKEALEIG-FTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVE 132 (281)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 35689998853 567888899999987 799999988864 5568899999999999874
No 139
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=86.76 E-value=42 Score=34.76 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEE--Ee-CC-CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFI--LD-AN-EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~--vD-aN-~~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+.+--|.. -+.+.++++.+++..++..+. += .| -+|. ++++ .++++
T Consensus 24 ~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~ 103 (448)
T PRK12331 24 TTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQ 103 (448)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHH
Confidence 567778888888889999999853311 134788999999987777764 22 22 3553 3444 44677
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EE-eCCCCCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VA-ADESCRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia-~dEs~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++...-+-.++. |.+.+.+..+..+ +.+.- |+ .+...++++.+ +++.+.| +|.+.++=+- |
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~v~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~G-ad~I~i~Dt~-G 178 (448)
T PRK12331 104 KSVENGIDIIRIFDALN--DVRNLETAVKATK-KAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMG-ADSICIKDMA-G 178 (448)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-C
Confidence 77777776445555554 3334444333333 23432 22 23344555443 3455555 6888777543 5
Q ss_pred -H--HHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++...+ +.++++.+|+....++ +.+-.++|
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~Gl--A~AN~laA 218 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGI--AEMTYLKA 218 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCc--HHHHHHHH
Confidence 3 34555554443 4688998888644444 44444444
No 140
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=86.66 E-value=23 Score=34.29 Aligned_cols=122 Identities=12% Similarity=0.156 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeE------e-c---C-------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKL------K-V---G-------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 245 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~Ki------K-v---G-------~~~~~D~~~v~avr~~--~~~~~l--~vDaN-~~~~~ 245 (412)
.++..+.+.++++.+.|...+-+ | . | .+.++-.++|++++++ .+++.| +.|+- .....
T Consensus 89 g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~ 168 (285)
T TIGR02320 89 GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGM 168 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCH
Confidence 57888889999999999988887 1 1 1 1345566788888875 456544 56764 35578
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcC
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~ 311 (412)
++|++.++...+.|-...|+|-+ ..+.+.++++.+.++... ++|+..-..-+....+.++-+.|
T Consensus 169 ~eAi~Ra~ay~eAGAD~ifv~~~--~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG 233 (285)
T TIGR02320 169 EDALKRAEAYAEAGADGIMIHSR--KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAG 233 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEecCC--CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcC
Confidence 99999999999988766788842 234555666665332111 35765433212222344445555
No 141
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=86.43 E-value=25 Score=34.68 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=92.0
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-C--h--------hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHH
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-N--L--------KEDIEVLRAIRAVHPDSSFILDANEGYKPQE 247 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~--~--------~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~ 247 (412)
.|+..++...++++..+.++.+.+.|+..+-+.++. . . +.-.+.++++|+.. ++.+.+=-...+ ++
T Consensus 100 ~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~~--~~ 176 (325)
T cd04739 100 IPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-TIPVAVKLSPFF--SA 176 (325)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-CCCEEEEcCCCc--cC
Confidence 345556656678888888888878899999998862 1 1 11245677787753 344555443333 24
Q ss_pred HHHHHHHHHcCCCCCc-----eeecCCCCC------C---------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHH
Q 015161 248 AVEVLEKLYEMGVTPV-----LFEQPVHRD------D---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~-----~iEeP~~~~------d---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~ 307 (412)
...+++.+++.++.-. +..-....+ . ...++.+.+ +++..++||.+.=-+.+.+|+.+.
T Consensus 177 ~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~-v~~~~~ipIig~GGI~s~~Da~e~ 255 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAI-LSGRVKASLAASGGVHDAEDVVKY 255 (325)
T ss_pred HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHH-HHcccCCCEEEECCCCCHHHHHHH
Confidence 5567777766553210 111001000 0 011222221 234568999998899999999999
Q ss_pred HHcCCCCEEEecCCCC--c---HHH-HHHHHHHHHHcCCc
Q 015161 308 VKGNLADVINIKLAKV--G---VLG-ALEIIEVVRASGLN 341 (412)
Q Consensus 308 i~~~a~d~v~ik~~~~--G---it~-~l~i~~~A~~~gi~ 341 (412)
+..| +|.+|+=-.-. | +.. ..++.++.+++|+.
T Consensus 256 l~aG-A~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g~~ 294 (325)
T cd04739 256 LLAG-ADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHGYE 294 (325)
T ss_pred HHcC-CCeeEEehhhhhcCchHHHHHHHHHHHHHHHcCCC
Confidence 9876 68888753321 3 222 23456677777764
No 142
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=86.35 E-value=27 Score=32.08 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=99.4
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+-..++++..+.++.+.+.|++.+.+-... ..-.+.++.+++.+|+ +.+=+..-.|.+++.+.. +.|.. |
T Consensus 10 ir~~~~~~a~~ia~al~~gGi~~iEit~~t--p~a~~~I~~l~~~~~~--~~vGAGTVl~~e~a~~ai----~aGA~--F 79 (201)
T PRK06015 10 LLIDDVEHAVPLARALAAGGLPAIEITLRT--PAALDAIRAVAAEVEE--AIVGAGTILNAKQFEDAA----KAGSR--F 79 (201)
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEeCCC--ccHHHHHHHHHHHCCC--CEEeeEeCcCHHHHHHHH----HcCCC--E
Confidence 334578889999999999999999998852 3456778888887875 777788889999875443 46654 8
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+. -+.++ +.++|..-| +.|+.++..+++.| ++++.+=|.- +| ..-...+..-- -++++
T Consensus 80 ivSP~~~~~v---i~~a~----~~~i~~iPG--~~TptEi~~A~~~G-a~~vK~FPa~~~GG~~yikal~~pl--p~~~l 147 (201)
T PRK06015 80 IVSPGTTQEL---LAAAN----DSDVPLLPG--AATPSEVMALREEG-YTVLKFFPAEQAGGAAFLKALSSPL--AGTFF 147 (201)
T ss_pred EECCCCCHHH---HHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECCchhhCCHHHHHHHHhhC--CCCcE
Confidence 8778654333 33332 468898876 67999999999988 5888777753 44 33222222222 37888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 148 ~ptGGV 153 (201)
T PRK06015 148 CPTGGI 153 (201)
T ss_pred EecCCC
Confidence 887654
No 143
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=86.35 E-value=31 Score=32.79 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHhC--CCcEEEEeCC------CCCCHHHHHHHHH-HHHcC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAVH--PDSSFILDAN------EGYKPQEAVEVLE-KLYEM 258 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~~--~~~~l~vDaN------~~~~~~~A~~~~~-~l~~~ 258 (412)
+.++..+.++.+.+.|++.|-.--........+.+ +++++.. .++.|.-=.. ..++.+...+-++ .|+++
T Consensus 27 ~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L 106 (285)
T cd06660 27 DEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRL 106 (285)
T ss_pred CHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 45677888888999999998644321111123333 4444432 2333332211 1256665544332 35544
Q ss_pred C---CCCceeecCCCCCC-----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEecCCCCcHHHH
Q 015161 259 G---VTPVLFEQPVHRDD-----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIKLAKVGVLGA 328 (412)
Q Consensus 259 ~---l~~~~iEeP~~~~d-----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~ik~~~~Git~~ 328 (412)
+ +.++++-.|-.... ++.+.++.+ .+.==+.|=|.++...+.++++. ..++++|+..+-+--...
T Consensus 107 ~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~-----~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~ 181 (285)
T cd06660 107 GTDYIDLYLLHWPDPDTPDIEETLRALEELVK-----EGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAE 181 (285)
T ss_pred CCCceeEEEecCCCCCCCCHHHHHHHHHHHHH-----cCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchH
Confidence 3 22345556644322 344444432 24333456677888888888887 789999988765431111
Q ss_pred HHHHHHHHHcCCcEEEccCcc
Q 015161 329 LEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 329 l~i~~~A~~~gi~~~~~~~~e 349 (412)
..+..+|+++|+.++..+.+.
T Consensus 182 ~~~~~~~~~~gi~v~~~~~l~ 202 (285)
T cd06660 182 EELLPYCREHGIGVIAYSPLA 202 (285)
T ss_pred HHHHHHHHHcCcEEEEecccc
Confidence 268899999999998876654
No 144
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=86.32 E-value=52 Score=35.40 Aligned_cols=167 Identities=17% Similarity=0.229 Sum_probs=101.6
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC--CC------hhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG--KN------LKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG--~~------~~~D~~~v~avr~~~~~~~l~vDaN----~~~~--~~~A-~~~~~ 253 (412)
+.++....+..+.+.||..+-+--| .+ -+.+.++++.+|+..|+..|.+=.. -+|. ++++ ..+++
T Consensus 25 ~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~ 104 (593)
T PRK14040 25 RLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVE 104 (593)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHH
Confidence 5678888888888899999998533 11 2478999999999988877643234 2455 4555 44777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe----EEe-CCCCCCHHHHH----HHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS----VAA-DESCRSLDDVK----KIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip----Ia~-dEs~~~~~~~~----~~i~~~a~d~v~ik~~~~G 324 (412)
...+.++....|-+++.. .+.+....+..++ .+.- |+. +...++.+.+. .+.+.| +|.+.++=+- |
T Consensus 105 ~a~~~Gid~~rifd~lnd--~~~~~~ai~~ak~-~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G-ad~i~i~Dt~-G 179 (593)
T PRK14040 105 RAVKNGMDVFRVFDAMND--PRNLETALKAVRK-VGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG-VDSLCIKDMA-G 179 (593)
T ss_pred HHHhcCCCEEEEeeeCCc--HHHHHHHHHHHHH-cCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 777888765677777653 4444443332232 3432 332 33345554433 334445 7888887654 5
Q ss_pred -H--HHHHHHHHHH-HHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ ..+.+++... ++.++++.+|+...+++ +.+..++|
T Consensus 180 ~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl--A~An~laA 219 (593)
T PRK14040 180 LLKPYAAYELVSRIKKRVDVPLHLHCHATTGL--STATLLKA 219 (593)
T ss_pred CcCHHHHHHHHHHHHHhcCCeEEEEECCCCch--HHHHHHHH
Confidence 3 3455554444 44688998888655444 44444444
No 145
>PRK06801 hypothetical protein; Provisional
Probab=86.27 E-value=11 Score=36.70 Aligned_cols=65 Identities=11% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcE
Q 015161 277 LGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~ 342 (412)
+..+.....++.++||+..- ...+.+.+.++++.| ++.+++|-+..- +..++++.++|+.+|+.+
T Consensus 62 ~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~G-ftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 62 LVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLG-FSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 33333333346789998864 566788899999987 799999987753 556889999999999987
No 146
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=86.06 E-value=18 Score=33.52 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-C-CCcEEEEeCC------CCCCH---HHHHHHHHHHHcCCCCCce
Q 015161 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-H-PDSSFILDAN------EGYKP---QEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~-~~~~l~vDaN------~~~~~---~~A~~~~~~l~~~~l~~~~ 264 (412)
.++++.+.|...+ =+|...-.|.+.+..+.+. + ..+-+.+|.. .+|.. ....++++.+++.++. .+
T Consensus 86 d~~~~~~~Ga~~v--vlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~-~i 162 (230)
T TIGR00007 86 DVEKLLDLGVDRV--IIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLE-GI 162 (230)
T ss_pred HHHHHHHcCCCEE--EEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCC-EE
Confidence 3455666788754 3554344566667776665 4 3466777855 23432 2335677777777653 23
Q ss_pred e------ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 265 F------EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 265 i------EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ +......|++-++++++ ..++||.+.=-+.+.+|++++.+.| +|.+.+
T Consensus 163 i~~~~~~~g~~~g~~~~~i~~i~~----~~~ipvia~GGi~~~~di~~~~~~G-adgv~i 217 (230)
T TIGR00007 163 IYTDISRDGTLSGPNFELTKELVK----AVNVPVIASGGVSSIDDLIALKKLG-VYGVIV 217 (230)
T ss_pred EEEeecCCCCcCCCCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 3 22222345777777764 5789999988999999999988765 666654
No 147
>PLN02591 tryptophan synthase
Probab=86.03 E-value=32 Score=32.69 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC----------------------------HHHHHHhHHHhhcccCCeEEeC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----------------------------WEGLGHVSHIAKDKFGVSVAAD 295 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----------------------------~~~~~~l~~~~~~~~~ipIa~d 295 (412)
..+|.-++.+.++++++.+.++=-|..+++ .+.+.+..+.+|+.+++||+.|
T Consensus 116 P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG 195 (250)
T PLN02591 116 PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG 195 (250)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe
Confidence 457777777778877776555555554321 1112221122233456666666
Q ss_pred CCCCCHHHHHHHHHcCCCCEE
Q 015161 296 ESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 296 Es~~~~~~~~~~i~~~a~d~v 316 (412)
--+.+.++++++.+.| +|++
T Consensus 196 FGI~~~e~v~~~~~~G-ADGv 215 (250)
T PLN02591 196 FGISKPEHAKQIAGWG-ADGV 215 (250)
T ss_pred CCCCCHHHHHHHHhcC-CCEE
Confidence 6666666666655543 4554
No 148
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=85.68 E-value=13 Score=36.05 Aligned_cols=57 Identities=16% Similarity=0.212 Sum_probs=47.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 69 ~~~~VPValHLDHg~~~e~i~~ai~~G-FtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 130 (282)
T TIGR01858 69 TTYNMPLALHLDHHESLDDIRQKVHAG-VRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVE 130 (282)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999864 567899999999997 799999988864 5668999999999999873
No 149
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.67 E-value=12 Score=36.20 Aligned_cols=57 Identities=11% Similarity=0.194 Sum_probs=48.0
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+++.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPV~lHLDHg~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VE 132 (284)
T PRK09195 71 KQYHHPLALHLDHHEKFDDIAQKVRSG-VRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999864 566899999999998 799999998864 6678999999999998773
No 150
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=85.55 E-value=23 Score=33.22 Aligned_cols=114 Identities=16% Similarity=0.259 Sum_probs=75.9
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC-CcEEEEeCCC------CCCH---HHHHHHHHHHHcCCCCCce
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP-DSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~-~~~l~vDaN~------~~~~---~~A~~~~~~l~~~~l~~~~ 264 (412)
+.++++.+.|...+ =+|...-+|.+.++.+.+.++ .+-+.+|+.. +|.. -+..++++.++++++. ..
T Consensus 89 e~v~~~l~~Ga~kv--vigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~-~i 165 (234)
T PRK13587 89 SQIMDYFAAGINYC--IVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLG-GI 165 (234)
T ss_pred HHHHHHHHCCCCEE--EECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCC-EE
Confidence 44566777787654 456444567888888888864 5778899743 3532 2345677777777653 22
Q ss_pred eecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 265 FEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 265 iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
|=--+.. .|++-+.++.+ .+++||...=-+.+.+|+.++.+.| ++.+
T Consensus 166 i~tdi~~dGt~~G~~~~li~~l~~----~~~ipvi~~GGi~s~edi~~l~~~G-~~~v 218 (234)
T PRK13587 166 IYTDIAKDGKMSGPNFELTGQLVK----ATTIPVIASGGIRHQQDIQRLASLN-VHAA 218 (234)
T ss_pred EEecccCcCCCCccCHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CCEE
Confidence 2222332 25766777764 5689998888899999999999876 4544
No 151
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.17 E-value=8.5 Score=37.29 Aligned_cols=57 Identities=19% Similarity=0.289 Sum_probs=48.0
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12737 71 RKYNIPLALHLDHHEDLDDIKKKVRAG-IRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46689999874 566789999999997 788999998864 6678999999999999873
No 152
>PLN02411 12-oxophytodienoate reductase
Probab=84.73 E-value=28 Score=35.36 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCCEEeEecCC---------------------Ch----hHHHHHHHHHHHh-CCC-cEEEEeC----C-
Q 015161 193 AAELASKYRKQGFTTLKLKVGK---------------------NL----KEDIEVLRAIRAV-HPD-SSFILDA----N- 240 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG~---------------------~~----~~D~~~v~avr~~-~~~-~~l~vDa----N- 240 (412)
..+.|+++++.||..+.|+.+. ++ +--++.|++||++ +++ +.+++-. +
T Consensus 167 f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~ 246 (391)
T PLN02411 167 YRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLD 246 (391)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccC
Confidence 3566778888999999999751 12 1235678999997 666 3344432 1
Q ss_pred --CCCCHHHHHHHHHHHHcC------CCCCceeecCCC-----------CCCHHH-HHHhHHHhhcccCCeEEeCCCCCC
Q 015161 241 --EGYKPQEAVEVLEKLYEM------GVTPVLFEQPVH-----------RDDWEG-LGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 241 --~~~~~~~A~~~~~~l~~~------~l~~~~iEeP~~-----------~~d~~~-~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
..-+.++.+.+.+.|+.. ++ .+|+==.. .....+ ...+.+.+++..++||..-=.+ +
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~g~~v--d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~ 323 (391)
T PLN02411 247 ATDSDPLNLGLAVVERLNKLQLQNGSKL--AYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-T 323 (391)
T ss_pred CCCCcchhhHHHHHHHHHHHHhhcCCCe--EEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-C
Confidence 122356677777777652 23 24431110 000000 1122223344677888776666 5
Q ss_pred HHHHHHHHHcCCCCEEE
Q 015161 301 LDDVKKIVKGNLADVIN 317 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~ 317 (412)
.+...++++.+.+|.|-
T Consensus 324 ~~~a~~~l~~g~aDlV~ 340 (391)
T PLN02411 324 RELGMQAVQQGDADLVS 340 (391)
T ss_pred HHHHHHHHHcCCCCEEE
Confidence 68888999999999874
No 153
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=84.71 E-value=21 Score=33.95 Aligned_cols=104 Identities=13% Similarity=0.226 Sum_probs=70.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
..|+.++.+++++.|.+.|+. .||=-+| ..+++.++++.+ ...+..+..- .-.+.+++.++.+.+ ++.+.
T Consensus 15 ~~~~~~~k~~i~~~L~~~Gv~--~iE~g~p~~~~~~~e~~~~l~~---~~~~~~~~~~-~r~~~~~v~~a~~~g-~~~i~ 87 (259)
T cd07939 15 VAFSREEKLAIARALDEAGVD--EIEVGIPAMGEEEREAIRAIVA---LGLPARLIVW-CRAVKEDIEAALRCG-VTAVH 87 (259)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEecCCCCHHHHHHHHHHHh---cCCCCEEEEe-ccCCHHHHHHHHhCC-cCEEE
Confidence 357899999999999999985 9998544 234456666653 2234444432 224678888888765 67776
Q ss_pred ecCCCC--------c------HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 318 IKLAKV--------G------VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 318 ik~~~~--------G------it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+=.... | +....++++.|+++|+.+.++++..+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~ 135 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASR 135 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCC
Confidence 632111 1 235668899999999999988876543
No 154
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=84.66 E-value=22 Score=32.25 Aligned_cols=121 Identities=17% Similarity=0.191 Sum_probs=73.2
Q ss_pred HHHHHHHHHcCCCEEeEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC---CCCCceeecC
Q 015161 194 AELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM---GVTPVLFEQP 268 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG--~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~---~l~~~~iEeP 268 (412)
.+++.++.+.|-..+=+..- ..++.-.+.++.+|+.+ ..+|.|.. |.+|++.-.+.=-|+ =+. -|-++-
T Consensus 54 ~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADis---t~ee~~~A~~~G~D~I~TTLs-GYT~~t 127 (192)
T PF04131_consen 54 LKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKY--QLVMADIS---TLEEAINAAELGFDIIGTTLS-GYTPYT 127 (192)
T ss_dssp HHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S---SHHHHHHHHHTT-SEEE-TTT-TSSTTS
T ss_pred HHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecC---CHHHHHHHHHcCCCEEEcccc-cCCCCC
Confidence 45567778889999888765 23345556789999988 89999984 577775543321110 010 133443
Q ss_pred CC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHH
Q 015161 269 VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEI 331 (412)
Q Consensus 269 ~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i 331 (412)
-. ..|++-+++|.+ .++||.+.-.++++++.+++++.|+.-++ +| ||.-..+
T Consensus 128 ~~~~pD~~lv~~l~~-----~~~pvIaEGri~tpe~a~~al~~GA~aVV------VGsAITrP~~I 182 (192)
T PF04131_consen 128 KGDGPDFELVRELVQ-----ADVPVIAEGRIHTPEQAAKALELGAHAVV------VGSAITRPQEI 182 (192)
T ss_dssp TTSSHHHHHHHHHHH-----TTSEEEEESS--SHHHHHHHHHTT-SEEE------E-HHHH-HHHH
T ss_pred CCCCCCHHHHHHHHh-----CCCcEeecCCCCCHHHHHHHHhcCCeEEE------ECcccCCHHHH
Confidence 33 235666666653 38999888899999999999999976654 46 8865544
No 155
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=84.58 E-value=43 Score=36.05 Aligned_cols=167 Identities=22% Similarity=0.312 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~vDaN~----~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+-+--|.. -+.+.++++.+|+..++..+.+=.++ +|. +++. ..+++
T Consensus 24 ~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 24 RTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 557778888888889999999853311 14678999999998888777654332 444 3444 35777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-----CCCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-----SCRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-----s~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++....+-.++. |.+.+....+..+ +.+.-+.... ..++++.+ +++.+.| +|.+.++=+- |
T Consensus 104 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~G-ad~I~i~Dt~-G 178 (592)
T PRK09282 104 KAAENGIDIFRIFDALN--DVRNMEVAIKAAK-KAGAHVQGTISYTTSPVHTIEKYVELAKELEEMG-CDSICIKDMA-G 178 (592)
T ss_pred HHHHCCCCEEEEEEecC--hHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcC-C
Confidence 77777876556666664 4444544333333 2344443222 23455443 3444555 7888887654 5
Q ss_pred -H--HHHHHHHHHH-HHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
. ..+.++.... ++.++++.+|+...+++ +.+..++|
T Consensus 179 ~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gl--a~An~laA 218 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVDLPVQLHSHCTSGL--APMTYLKA 218 (592)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCc--HHHHHHHH
Confidence 3 3455555544 44688888888654444 34444444
No 156
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.57 E-value=5.5 Score=36.23 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecC--CC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 316 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP--~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i~~~a~d~v 316 (412)
..+.++|.++++.+ +.++. |||-. +. +.-.+.++.+++. ..+..|..|=.+.++. ++.++.+.| +|++
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~--~iev~~~l~~~~g~~~i~~l~~~---~~~~~i~~d~k~~d~~~~~~~~~~~~G-ad~i 80 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVD--IIEIGTPLIKNEGIEAVKEMKEA---FPDRKVLADLKTMDAGEYEAEQAFAAG-ADIV 80 (206)
T ss_pred CCCHHHHHHHHHHc-ccCee--EEEeCCHHHHHhCHHHHHHHHHH---CCCCEEEEEEeeccchHHHHHHHHHcC-CCEE
Confidence 36789999999999 66774 99995 32 2234555666542 2356787776555654 677778777 6888
Q ss_pred EecCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015161 317 NIKLAKVGVLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 317 ~ik~~~~Git~~l~i~~~A~~~gi~~~~~ 345 (412)
.+.... +.....++++.|+++|+++++.
T Consensus 81 ~vh~~~-~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 81 TVLGVA-DDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEeccC-CHHHHHHHHHHHHHcCCEEEEE
Confidence 766543 2223467888999999999875
No 157
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=84.54 E-value=20 Score=34.68 Aligned_cols=115 Identities=19% Similarity=0.383 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEE----------EEeCCC-CC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSF----------ILDANE-GY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l----------~vDaN~-~~-~~~~A~~~~~~l 255 (412)
+.+.+..+.||+.+=+.-. -+.++.++..+.+.+. += +.+| ..|.+. .| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~T 167 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERT 167 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHh
Confidence 4556677889999998876 4567777766655542 21 1111 112222 26 499999999875
Q ss_pred H----------cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. -.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~iPLVlHGgSG~~~e~~~kai~~Gi~-KiNi~ 232 (284)
T PRK12737 168 GIDSLAVAIGTAHGL---YKGEP--KLDFERLAEIRE----KVSIPLVLHGASGVPDEDVKKAISLGIC-KVNVA 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHCCCe-EEEeC
Confidence 3 1343 44555 467888888875 56899876 5576778889999998843 34554
No 158
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=84.51 E-value=44 Score=32.99 Aligned_cols=117 Identities=20% Similarity=0.272 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee----
Q 015161 192 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---- 266 (412)
+..+.++.+.+.|...+-+-.. .+.+.-.+.++.+++.+|++.+++ ..--+.++|... .+.+.. +|=
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l----~~aGaD--~I~vg~g 165 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDL----IDAGAD--GVKVGIG 165 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHH----HhcCCC--EEEECCC
Confidence 3456677788899998887664 223444677899999888888887 333556666444 344543 321
Q ss_pred ----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 ----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 ----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.....-++..+.++.+.. ...++||.+|--+.+..++.+++..| +|.+++
T Consensus 166 ~G~~~~t~~~~g~g~p~~~~i~~v~~~~-~~~~vpVIA~GGI~~~~di~kAla~G-A~~Vmi 225 (325)
T cd00381 166 PGSICTTRIVTGVGVPQATAVADVAAAA-RDYGVPVIADGGIRTSGDIVKALAAG-ADAVML 225 (325)
T ss_pred CCcCcccceeCCCCCCHHHHHHHHHHHH-hhcCCcEEecCCCCCHHHHHHHHHcC-CCEEEe
Confidence 112223455566665432 23579999999999999999999987 577765
No 159
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=84.32 E-value=40 Score=32.36 Aligned_cols=176 Identities=21% Similarity=0.293 Sum_probs=99.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHH-HHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQE-AVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~~~~~~l~vDaN----~~~~--~~~-A~~~~~ 253 (412)
+.++..+.+..+.+.|+..+-+..+. .-+.|.++++.+++..++.++..=++ -+|. +.. -...++
T Consensus 19 ~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~ 98 (275)
T cd07937 19 RTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVE 98 (275)
T ss_pred cHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHH
Confidence 56777778888889999999876542 13577899999999877655542111 2232 122 244666
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-----CCCCCCHHHHHH----HHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-----DESCRSLDDVKK----IVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-----dEs~~~~~~~~~----~i~~~a~d~v~ik~~~~G 324 (412)
...+.++....+-.|++ |++.+.+..+..++ .+.-+.. +-+.++.+.+.+ +.+.| +|.+.++=+- |
T Consensus 99 ~~~~~g~~~iri~~~~~--~~~~~~~~i~~ak~-~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~G-a~~i~l~DT~-G 173 (275)
T cd07937 99 KAAKNGIDIFRIFDALN--DVRNLEVAIKAVKK-AGKHVEGAICYTGSPVHTLEYYVKLAKELEDMG-ADSICIKDMA-G 173 (275)
T ss_pred HHHHcCCCEEEEeecCC--hHHHHHHHHHHHHH-CCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcC-CCEEEEcCCC-C
Confidence 67777765345655654 45555554443332 3444332 224556555543 34445 6776665433 5
Q ss_pred ---HHHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 325 ---VLGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 325 ---it~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
.....+++...+ ..++++.+|+.... |++.+-.++|.-..+.++|
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~--GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHLHTHDTS--GLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEecCCC--ChHHHHHHHHHHhCCCEEE
Confidence 335556555544 45788888875433 4444444444333445554
No 160
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=83.99 E-value=22 Score=34.37 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----C
Q 015161 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----H 230 (412)
Q Consensus 156 l~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~ 230 (412)
+.+..++..++|+.-.|.... + .+.+.+..+.||+.+=+.-. .+.++.++..+.+.+. +
T Consensus 63 ~~~~~a~~~~VPValHLDHg~------------~----~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~g 126 (282)
T TIGR01858 63 LCSAASTTYNMPLALHLDHHE------------S----LDDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQD 126 (282)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------C----HHHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 444557777777654443211 2 24456677889999999876 4567777776666552 2
Q ss_pred C--CcEE----------EEeCC-CCC-CHHHHHHHHHHHH----------cCCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 231 P--DSSF----------ILDAN-EGY-KPQEAVEVLEKLY----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 231 ~--~~~l----------~vDaN-~~~-~~~~A~~~~~~l~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
= +.+| ..+.+ ..| ++++|.+|+++.. -.|+ |-.+| .-|++-++++++
T Consensus 127 v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~---yk~~p--~Ldf~~L~~I~~---- 197 (282)
T TIGR01858 127 CSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL---YKKTP--KLDFDRLAEIRE---- 197 (282)
T ss_pred CeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC---cCCCC--ccCHHHHHHHHH----
Confidence 1 1111 11111 226 4999999998653 1343 44555 567888998875
Q ss_pred ccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 287 KFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 287 ~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 198 ~~~iPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 230 (282)
T TIGR01858 198 VVDVPLVLHGASDVPDEDVRRTIELGIC-KVNVA 230 (282)
T ss_pred HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 56899876 5566677889999988743 34443
No 161
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.90 E-value=60 Score=34.10 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee---cCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---QPV 269 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---eP~ 269 (412)
.+.++.+.+.|...+-+.... +-..-++.++.+++.+|++.+++ ..-.|.++|.... +.|.. +|- -|-
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~a--G~V~t~~~a~~~~----~aGad--~I~vg~g~G 314 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIA--GNVVTADQAKNLI----DAGAD--GLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEE--CCcCCHHHHHHHH----HcCCC--EEEECCcCC
Confidence 678888899999999888741 22234678899999888888876 4556677765443 45553 542 111
Q ss_pred -----------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 270 -----------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 270 -----------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
..-++..+.++.+.. ++.++||.+|--+.+..|+.+++..| +|.+++--.
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~-~~~~v~vIadGGi~~~~di~kAla~G-A~~Vm~G~~ 375 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYA-RERGVPCIADGGIKNSGDICKALALG-ADCVMLGSL 375 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHH-hhcCCeEEecCCCCCHHHHHHHHHcC-CCEEEECch
Confidence 112344444444332 25689999999999999999999988 577766433
No 162
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.89 E-value=18 Score=36.62 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=69.8
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. .||=-+| +++++..+++.+ ......++.- +-....++..+++.
T Consensus 14 DG~Q~~~~~~s~e~k~~ia~~L~~~GV~--~IE~G~p~~~~~~~e~i~~i~~---~~~~~~i~~~-~r~~~~di~~a~~~ 87 (378)
T PRK11858 14 DGEQTPGVVFTNEEKLAIARMLDEIGVD--QIEAGFPAVSEDEKEAIKAIAK---LGLNASILAL-NRAVKSDIDASIDC 87 (378)
T ss_pred ccCcCCCCCCCHHHHHHHHHHHHHhCCC--EEEEeCCCcChHHHHHHHHHHh---cCCCeEEEEE-cccCHHHHHHHHhC
Confidence 5565 47899999999999999985 9996333 344566666653 1223334332 33457888888887
Q ss_pred CCCCEEEecCCC--------C-----c-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 NLADVINIKLAK--------V-----G-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ~a~d~v~ik~~~--------~-----G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+ ++.+.+=... . . +....+.+++|++.|+.+.++++..+
T Consensus 88 g-~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 88 G-VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 6 5666542211 1 1 23456689999999999998865433
No 163
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.75 E-value=23 Score=34.32 Aligned_cols=115 Identities=14% Similarity=0.298 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEE----------EEeC-CCCC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSF----------ILDA-NEGY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l----------~vDa-N~~~-~~~~A~~~~~~l 255 (412)
+.+.++.+.||+.+=+.-. -++++.++.-+.+.+. += +.+| ..+. ...| ++++|.+|+++.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 167 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEAT 167 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHH
Confidence 4566677889999998876 4567777766666542 20 1111 1111 1236 499999999874
Q ss_pred H----------cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. -.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 232 (284)
T PRK09195 168 GIDSLAVAIGTAHGM---YKGEP--KLDFDRLENIRQ----WVNIPLVLHGASGLPTKDIQQTIKLGIC-KVNVA 232 (284)
T ss_pred CcCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCeEEecCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 2 1343 45555 567888888875 56899977 5566677889999998844 34443
No 164
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=83.74 E-value=49 Score=32.86 Aligned_cols=129 Identities=18% Similarity=0.282 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCc-EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDS-SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~-~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
.++++-.+++++....-...+-+-+|.. ++|.++++++.++++.. -|.+|..++++... ++.++.+.+. |
T Consensus 78 ~~~e~~~~~v~~~~~~~~~~~~vsvG~~-~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~-i~~ik~ir~~-----~-- 148 (343)
T TIGR01305 78 YSVDEWKAFATNSSPDCLQNVAVSSGSS-DNDLEKMTSILEAVPQLKFICLDVANGYSEHF-VEFVKLVREA-----F-- 148 (343)
T ss_pred CCHHHHHHHHHhhcccccceEEEEeccC-HHHHHHHHHHHhcCCCCCEEEEECCCCcHHHH-HHHHHHHHhh-----C--
Confidence 3667666666554333344455566632 47899999999986544 46789999987654 3444444331 1
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec-------CCC----Cc---HHHHHHHH
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK-------LAK----VG---VLGALEII 332 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik-------~~~----~G---it~~l~i~ 332 (412)
.+.+|..| ++.+.++.+++++.| +|++.+- .++ +| ++...+++
T Consensus 149 ---------------------p~~~viaG-NV~T~e~a~~Li~aG-AD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a 205 (343)
T TIGR01305 149 ---------------------PEHTIMAG-NVVTGEMVEELILSG-ADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECA 205 (343)
T ss_pred ---------------------CCCeEEEe-cccCHHHHHHHHHcC-CCEEEEcccCCCcccCceeCCCCcCHHHHHHHHH
Confidence 12455554 567888999999987 6777533 111 23 45566778
Q ss_pred HHHHHcCCcEEEccCc
Q 015161 333 EVVRASGLNLMIGGMV 348 (412)
Q Consensus 333 ~~A~~~gi~~~~~~~~ 348 (412)
+.|+.++++++..+-+
T Consensus 206 ~aa~~~~v~VIaDGGI 221 (343)
T TIGR01305 206 DAAHGLKGHIISDGGC 221 (343)
T ss_pred HHhccCCCeEEEcCCc
Confidence 8888889999876543
No 165
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=83.72 E-value=36 Score=33.04 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----D----ANEGY-KPQEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----D----aN~~~-~~~~A~~~~~~l~~ 257 (412)
+.+.++.+.||+.+=+.-. -++++.++.-+.+.+. +- +.+|- + | ....| ++++|.+|+++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~Tgv 170 (285)
T PRK07709 91 EKCKEAIDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGI 170 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCC
Confidence 3455677889999999877 4667788777666552 21 11110 1 1 11226 49999999987631
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+ =+|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~L~~~~L~~I~~----~~~iPLVLHGgSG~~~e~~~~ai~~Gi~-KiNi~ 233 (285)
T PRK07709 171 DCLAPALGSVHGP---YKGEP--NLGFAEMEQVRD----FTGVPLVLHGGTGIPTADIEKAISLGTS-KINVN 233 (285)
T ss_pred CEEEEeecccccC---cCCCC--ccCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 233 43444 467888888865 57899977 5566677889999998844 34554
No 166
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=83.58 E-value=17 Score=35.29 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=46.0
Q ss_pred CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 289 GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 289 ~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++||++.- ...+.+.+.++++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VE 135 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHHPFEENVETTKKVVEYAHARNVSVE 135 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 38999874 566899999999998 799999998864 6679999999999999884
No 167
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=83.50 E-value=15 Score=35.82 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++||+..-...+.+.+.++++.| ++.+|+|-...- +..++++.++|+++|+.+.
T Consensus 77 ~vPV~lHLDH~~~~~i~~ai~~G-ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE 134 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVG-YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVE 134 (293)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC-CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 67998865444888899999877 899999988875 5568899999999999884
No 168
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=83.23 E-value=62 Score=33.72 Aligned_cols=167 Identities=21% Similarity=0.311 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCC--------hhHHHHHHHHHHHhCCCcEEEE--e-CC-CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKN--------LKEDIEVLRAIRAVHPDSSFIL--D-AN-EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~--------~~~D~~~v~avr~~~~~~~l~v--D-aN-~~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+.+--|.. -+.+.++++.+++..++..+.. = .| -+|. +++. ..|++
T Consensus 23 ~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 23 RTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 567788888888899999999843311 1357899999999877776643 2 23 2452 4553 34677
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCC-----CCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADES-----CRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs-----~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++...-+-.|++ |.+.+....+..+ +.+.-+....+ .++.+.+ +++.+.| +|.+.++=+- |
T Consensus 103 ~A~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~G-ad~I~i~Dt~-G 177 (467)
T PRK14041 103 KVAEYGLDIIRIFDALN--DIRNLEKSIEVAK-KHGAHVQGAISYTVSPVHTLEYYLEFARELVDMG-VDSICIKDMA-G 177 (467)
T ss_pred HHHHCCcCEEEEEEeCC--HHHHHHHHHHHHH-HCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCcc-C
Confidence 77777776445566665 4555554433333 34555543332 2343333 3444555 6888777553 6
Q ss_pred -H--HHHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 325 -V--LGALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 325 -i--t~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ .++.+++...+ +.++++.+|+....++ +.+-.++|
T Consensus 178 ~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~Gl--A~AN~laA 217 (467)
T PRK14041 178 LLTPKRAYELVKALKKKFGVPVEVHSHCTTGL--ASLAYLAA 217 (467)
T ss_pred CcCHHHHHHHHHHHHHhcCCceEEEecCCCCc--HHHHHHHH
Confidence 3 34555554443 4588998888644444 44444444
No 169
>PRK06801 hypothetical protein; Provisional
Probab=82.92 E-value=28 Score=33.77 Aligned_cols=121 Identities=14% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh--CCCcEE--------------EEe--CCCCCC-HHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF--------------ILD--ANEGYK-PQEAVEVLEK 254 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~--~~~~~l--------------~vD--aN~~~~-~~~A~~~~~~ 254 (412)
+.+++..+.||+.+-+.-. .+.++.++..+++.+. ..++.+ ..+ ....+| +++|.+|.++
T Consensus 88 e~i~~Ai~~GftSVm~D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~ 167 (286)
T PRK06801 88 EAVVRALRLGFSSVMFDGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDR 167 (286)
T ss_pred HHHHHHHHhCCcEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHH
Confidence 3455667789999999765 3456677766666542 111111 111 112254 7999999876
Q ss_pred HHcCCCCCce-----eecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 255 LYEMGVTPVL-----FEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 255 l~~~~l~~~~-----iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
..---+.+-. ....-+..+++.++++++ .+++|+.+ |=|=.+.++++++++.| ++-+|+.-
T Consensus 168 tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~----~~~~PLVlHGGSgi~~e~~~~~i~~G-i~KINv~T 234 (286)
T PRK06801 168 TGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQ----QTGLPLVLHGGSGISDADFRRAIELG-IHKINFYT 234 (286)
T ss_pred HCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEehh
Confidence 5211011000 112223567888888864 56788855 66777788999999988 55666643
No 170
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=82.55 E-value=27 Score=32.99 Aligned_cols=121 Identities=19% Similarity=0.184 Sum_probs=75.6
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~-vDaN~~~~~~~A~~~~~~l 255 (412)
.+.+..+.+|....++-.++. |-.-+|+.|-.|. .+..+.+++.++. -.++..+ + +.=++ ..+++|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpy---c~dd~----~~ar~l 140 (248)
T cd04728 68 NTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPY---CTDDP----VLAKRL 140 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEE---eCCCH----HHHHHH
Confidence 355677888876655555543 5688999886432 2445666777765 2444444 2 11133 345666
Q ss_pred HcCCCCCceeecC----CC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++.+.. .+ -| +. ..+.+-++.+++ ..++||..|=-+.+++|+.++++.|+ |.+.+
T Consensus 141 ~~~G~~--~v-mPlg~pIGsg~Gi~~~~~I~~I~e----~~~vpVI~egGI~tpeda~~AmelGA-dgVlV 203 (248)
T cd04728 141 EDAGCA--AV-MPLGSPIGSGQGLLNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELGA-DAVLL 203 (248)
T ss_pred HHcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hCCCcEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 667653 55 33 11 124555666653 46899999999999999999999984 66544
No 171
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=82.43 E-value=23 Score=34.69 Aligned_cols=57 Identities=12% Similarity=0.265 Sum_probs=47.6
Q ss_pred cccC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~-ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.. +||++.- ...+.+...++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 70 ~~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 132 (307)
T PRK05835 70 ERYPHIPVALHLDHGTTFESCEKAVKAG-FTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVE 132 (307)
T ss_pred HhcCCCeEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3554 9999874 566899999999997 799999988863 6679999999999999873
No 172
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.32 E-value=16 Score=34.44 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC-------C----C----CHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE-------G----Y----KPQEAVEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~-------~----~----~~~~A~~~~~ 253 (412)
+++++.+-++++.+.|-..+||-=+ .+-+++++++++++=-+.=+.|+.. + + ..+++++.++
T Consensus 87 ~~~~~~~~~~~l~~aGa~gv~iED~---~~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ 163 (240)
T cd06556 87 APTAAFELAKTFMRAGAAGVKIEGG---EWHIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADAL 163 (240)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcCc---HHHHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHH
Confidence 5688888899999999999998754 2445678888887512334577621 0 0 2568899999
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
.+++.|....|+|-+ +.+..+++++ ..++|+..
T Consensus 164 ay~~AGAd~i~~e~~----~~e~~~~i~~----~~~~P~~~ 196 (240)
T cd06556 164 AYAPAGADLIVMECV----PVELAKQITE----ALAIPLAG 196 (240)
T ss_pred HHHHcCCCEEEEcCC----CHHHHHHHHH----hCCCCEEE
Confidence 999998766799965 3555677775 57889865
No 173
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=82.16 E-value=14 Score=35.78 Aligned_cols=53 Identities=15% Similarity=0.245 Sum_probs=45.4
Q ss_pred CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 290 VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 290 ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
+||+..- ...+++.++++++.| ++-+.+|-+..- +..++++.++|+++|+.+-
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VE 135 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAG-FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVE 135 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 8998864 566899999999998 799999998864 6678999999999999874
No 174
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=82.07 E-value=23 Score=35.54 Aligned_cols=103 Identities=22% Similarity=0.384 Sum_probs=70.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeec--CCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. +||= |.. +++++.++.+.+ ......|+.- .-.+..+++++++.
T Consensus 10 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~---~~~~~~v~~~-~r~~~~di~~a~~~ 83 (363)
T TIGR02090 10 DGEQTPGVSLTVEQKVEIARKLDELGVD--VIEAGFPIASEGEFEAIKKISQ---EGLNAEICSL-ARALKKDIDKAIDC 83 (363)
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHh---cCCCcEEEEE-cccCHHHHHHHHHc
Confidence 5555 46789999999999999985 9997 544 456666676654 2334555432 13568899999887
Q ss_pred CCCCEEEec-----------CCCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 311 NLADVINIK-----------LAKV--G-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 311 ~a~d~v~ik-----------~~~~--G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+ ++.+.+= ..+. . +..+.+.+++|+++|+.+.++.+
T Consensus 84 g-~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 84 G-VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred C-cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 6 6777661 1111 1 34577899999999999877643
No 175
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=81.80 E-value=21 Score=34.62 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=46.9
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~ 342 (412)
++.++||+..- ...+.+.+.++++.| ++.+.+|-+..= +..++++.++|+++|+.+
T Consensus 71 ~~~~vPV~lHLDH~~~~e~i~~Ai~~G-ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~V 131 (283)
T PRK07998 71 DKMDVPVSLHLDHGKTFEDVKQAVRAG-FTSVMIDGAALPFEENIAFTKEAVDFAKSYGVPV 131 (283)
T ss_pred HHCCCCEEEECcCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 46789998864 556888999999987 789999988863 567899999999999987
No 176
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=81.79 E-value=31 Score=33.46 Aligned_cols=138 Identities=17% Similarity=0.234 Sum_probs=84.6
Q ss_pred HHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----C
Q 015161 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----H 230 (412)
Q Consensus 156 l~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~ 230 (412)
+....++..++|+.-.|.... + .+.+.++.+.||+.+=+.-. -+.++.++..+.+.+. +
T Consensus 65 ~~~~~a~~~~VPValHLDHg~------------~----~e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~evv~~Ah~~g 128 (286)
T PRK12738 65 LCSAYSTTYNMPLALHLDHHE------------S----LDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQD 128 (286)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------C----HHHHHHHHHcCCCeEeecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 344557777777654443211 2 34455667889999998876 4567777766666542 2
Q ss_pred C--CcEE----------EEeCC-CCC-CHHHHHHHHHHHHc----------CCCCCceeecCCCCCCHHHHHHhHHHhhc
Q 015161 231 P--DSSF----------ILDAN-EGY-KPQEAVEVLEKLYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKD 286 (412)
Q Consensus 231 ~--~~~l----------~vDaN-~~~-~~~~A~~~~~~l~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~ 286 (412)
= +.+| -.+.+ ..| ++++|.+|.++..- .|. |-..| .-|++-++++++
T Consensus 129 v~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~---Y~~~p--~Ldfd~l~~I~~---- 199 (286)
T PRK12738 129 CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL---YSKTP--KIDFQRLAEIRE---- 199 (286)
T ss_pred CeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC---CCCCC--cCCHHHHHHHHH----
Confidence 1 1111 11111 126 49999999987531 233 33333 467888988875
Q ss_pred ccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 287 KFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 287 ~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++|+.+ |=|-...++++++++.|.+- +|+.
T Consensus 200 ~~~vPLVLHGgSG~~~e~~~kai~~GI~K-iNi~ 232 (286)
T PRK12738 200 VVDVPLVLHGASDVPDEFVRRTIELGVTK-VNVA 232 (286)
T ss_pred HhCCCEEEeCCCCCCHHHHHHHHHcCCeE-EEeC
Confidence 57899977 55666678899999887443 4443
No 177
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=81.74 E-value=47 Score=32.20 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----e----CCCCC-CHHHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----D----ANEGY-KPQEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----D----aN~~~-~~~~A~~~~~~l~~ 257 (412)
+.++++.+.||+.+=+.-. -++++.++.-+.+.+. +- +.+|- + | .+..| ++++|.+|+++..-
T Consensus 91 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~Tgv 170 (286)
T PRK08610 91 EKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGI 170 (286)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCC
Confidence 3445677889999999876 4667777776666542 21 11110 1 1 12236 49999999987431
Q ss_pred ----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 ----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 ----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+- +|+.
T Consensus 171 D~LAvaiGt~HG~---Y~~~p--~Ld~~~L~~I~~----~~~vPLVLHGgSG~~~e~~~~ai~~GI~K-iNi~ 233 (286)
T PRK08610 171 DALAPALGSVHGP---YKGEP--KLGFKEMEEIGL----STGLPLVLHGGTGIPTKDIQKAIPFGTAK-INVN 233 (286)
T ss_pred CEEEeeccccccc---cCCCC--CCCHHHHHHHHH----HHCCCEEEeCCCCCCHHHHHHHHHCCCeE-EEec
Confidence 232 43444 457888888875 56899977 55666778899999988443 4444
No 178
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=81.34 E-value=50 Score=34.15 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee---c
Q 015161 192 EAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---Q 267 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---e 267 (412)
+..++++.+.+.|...+-+-... +-..-.+.++.+|+.+|++.+++ -.-.|.++|....+ .|.. +|= -
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~----aGad--~i~vg~g 295 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALID----AGAD--GLRVGIG 295 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHH----hCCC--EEEECCC
Confidence 34566778888899999888742 22344566788888888888776 44556777755544 3432 330 1
Q ss_pred C-----------CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 268 P-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 268 P-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
| +..-++....++.+.. ...++||.+|--+.+..|+.+++..| ++.+++-
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~-~~~~vpviadGGi~~~~di~kAla~G-A~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYA-AQSGIPVIADGGIRYSGDIVKALAAG-ADAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEEC
Confidence 1 1112344455554332 24689999999999999999999998 4666553
No 179
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=81.32 E-value=31 Score=34.27 Aligned_cols=141 Identities=12% Similarity=0.048 Sum_probs=77.6
Q ss_pred HHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 197 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~-vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
.+.+.+.|...+.+-... +.+.-.+.++.+|+.|.++... .|+ ..+++++..++++.+.+++....+|-+..-.-..
T Consensus 93 l~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 171 (333)
T TIGR03217 93 LKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLP 171 (333)
T ss_pred HHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCH
Confidence 345556787777765542 2223344566666666654433 333 4677788888888888877655577777776666
Q ss_pred HHHHHhHHHhhcccC--CeEEeCCCC-CC--HHHHHHHHHcCCCCEEEecCCCCc---H---HHHHHHHHHHHHcCCc
Q 015161 275 EGLGHVSHIAKDKFG--VSVAADESC-RS--LDDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 341 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~--ipIa~dEs~-~~--~~~~~~~i~~~a~d~v~ik~~~~G---i---t~~l~i~~~A~~~gi~ 341 (412)
+...++.+.+++..+ +||...=.. .+ ......++++| ++. +|.+-.| - ..+-.++.+.+..|+.
T Consensus 172 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~G~G~~aGN~~~E~lv~~l~~~g~~ 246 (333)
T TIGR03217 172 DDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAG-ATR--IDASLRGLGAGAGNAPLEVFVAVLDRLGWN 246 (333)
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhC-CCE--EEeecccccccccCccHHHHHHHHHhcCCC
Confidence 666666555555554 666443221 11 22334455555 454 4444433 1 2233445555555544
No 180
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=81.31 E-value=26 Score=34.05 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=47.6
Q ss_pred ccc--CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKF--GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~--~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++. ++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+++|+.+-
T Consensus 72 ~~~~~~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VE 135 (288)
T TIGR00167 72 EAYPYGVPVALHLDHGASEEDCAQAVKAG-FSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVE 135 (288)
T ss_pred HhccCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 355 78999864 567899999999987 899999988863 5678999999999999874
No 181
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=81.24 E-value=29 Score=31.67 Aligned_cols=143 Identities=16% Similarity=0.296 Sum_probs=91.4
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-.-. ..-.+.++.+++.+|+ +.+=+..-.|.+++.+..+ .|.. |
T Consensus 14 ir~~~~~~a~~~~~al~~gGi~~iEiT~~t--~~a~~~I~~l~~~~p~--~~vGAGTV~~~e~a~~a~~----aGA~--F 83 (196)
T PF01081_consen 14 IRGDDPEDAVPIAEALIEGGIRAIEITLRT--PNALEAIEALRKEFPD--LLVGAGTVLTAEQAEAAIA----AGAQ--F 83 (196)
T ss_dssp ETTSSGGGHHHHHHHHHHTT--EEEEETTS--TTHHHHHHHHHHHHTT--SEEEEES--SHHHHHHHHH----HT-S--E
T ss_pred EEcCCHHHHHHHHHHHHHCCCCEEEEecCC--ccHHHHHHHHHHHCCC--CeeEEEeccCHHHHHHHHH----cCCC--E
Confidence 344577888899999999999999998853 3446778888888887 5566777888888755544 4543 7
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC-cHHHHHHHHHHHHHcCCcEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~-Git~~l~i~~~A~~~gi~~~ 343 (412)
+=-|.-..+ ..+.++ +.++|+.-| +.|+.++.++++.| ++++.+=|... |-...+|...-- --+++++
T Consensus 84 ivSP~~~~~---v~~~~~----~~~i~~iPG--~~TptEi~~A~~~G-~~~vK~FPA~~~GG~~~ik~l~~p-~p~~~~~ 152 (196)
T PF01081_consen 84 IVSPGFDPE---VIEYAR----EYGIPYIPG--VMTPTEIMQALEAG-ADIVKLFPAGALGGPSYIKALRGP-FPDLPFM 152 (196)
T ss_dssp EEESS--HH---HHHHHH----HHTSEEEEE--ESSHHHHHHHHHTT--SEEEETTTTTTTHHHHHHHHHTT-TTT-EEE
T ss_pred EECCCCCHH---HHHHHH----HcCCcccCC--cCCHHHHHHHHHCC-CCEEEEecchhcCcHHHHHHHhcc-CCCCeEE
Confidence 777754322 333332 458898876 67999999999988 68987777664 633333322211 2368888
Q ss_pred EccCc
Q 015161 344 IGGMV 348 (412)
Q Consensus 344 ~~~~~ 348 (412)
+.+-+
T Consensus 153 ptGGV 157 (196)
T PF01081_consen 153 PTGGV 157 (196)
T ss_dssp EBSS-
T ss_pred EcCCC
Confidence 86643
No 182
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=80.98 E-value=24 Score=32.46 Aligned_cols=95 Identities=22% Similarity=0.299 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCH-HHHHHhHHHhhcccC--CeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW-EGLGHVSHIAKDKFG--VSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~-~~~~~l~~~~~~~~~--ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
+.+++.+.++.+-+.|+. .+|=.+...+. +.++++++ +.+ +.|.+| ++.+.+++..+++.|+ |++..-
T Consensus 20 ~~~~~~~~~~a~~~gGi~--~iEvt~~~~~~~~~i~~l~~----~~~~~~~iGaG-TV~~~~~~~~a~~aGA-~fivsp- 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFR--AIEIPLNSPDPFDSIAALVK----ALGDRALIGAG-TVLSPEQVDRLADAGG-RLIVTP- 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCccHHHHHHHHHH----HcCCCcEEeEE-ecCCHHHHHHHHHcCC-CEEECC-
Confidence 789999999999999986 99988776543 34555553 344 444444 7889999999999985 666431
Q ss_pred CCCcHHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 321 AKVGVLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 321 ~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
. .. .++.+.|+..|+.+.+|++..+.+
T Consensus 91 ~---~~--~~v~~~~~~~~~~~~~G~~t~~E~ 117 (206)
T PRK09140 91 N---TD--PEVIRRAVALGMVVMPGVATPTEA 117 (206)
T ss_pred C---CC--HHHHHHHHHCCCcEEcccCCHHHH
Confidence 1 21 466788889999999998765443
No 183
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=80.85 E-value=27 Score=35.04 Aligned_cols=106 Identities=15% Similarity=0.264 Sum_probs=69.8
Q ss_pred eCCCC----CCHHHHHHHHHHHHcCCCCCceeecCCCC---CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANEG----YKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~~----~~~~~A~~~~~~l~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+|+ |+.++-+++++.|.+.|+. .||=-+|. .+++..+++.+. ..+..++.= .-.+.+++..+++.
T Consensus 11 DG~Q~~~~~~s~~~k~~ia~~L~~~Gv~--~IEvG~p~~~~~~~e~i~~i~~~---~~~~~i~~~-~r~~~~di~~a~~~ 84 (365)
T TIGR02660 11 DGEQAPGVAFTAAEKLAIARALDEAGVD--ELEVGIPAMGEEERAVIRAIVAL---GLPARLMAW-CRARDADIEAAARC 84 (365)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHc---CCCcEEEEE-cCCCHHHHHHHHcC
Confidence 55554 7899999999999999985 99994442 345666666532 223334321 22467888888877
Q ss_pred CCCCEEEecCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ~a~d~v~ik~~~--------~G------it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
+ ++.+.+=... .| +....+++++|+++|+.+.+++...+
T Consensus 85 g-~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~ 137 (365)
T TIGR02660 85 G-VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDAS 137 (365)
T ss_pred C-cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCC
Confidence 6 5655443221 11 23355789999999999998876544
No 184
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=80.72 E-value=23 Score=34.31 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=47.6
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+..- ...+.+.+.++++.| ++-+.+|-+..= +..++++.++|+.+|+.+-
T Consensus 71 ~~~~VPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVE 132 (284)
T PRK12857 71 EKASVPVALHLDHGTDFEQVMKCIRNG-FTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVE 132 (284)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 36689999864 567889999999987 789999988863 5668999999999999873
No 185
>PRK08185 hypothetical protein; Provisional
Probab=80.71 E-value=25 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=47.6
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++..+||+..- ...+++.++++++.| ++.+++|-+..- +..++++..+|+.+|+.+.
T Consensus 65 ~~~~vPV~lHLDHg~~~e~i~~ai~~G-f~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE 126 (283)
T PRK08185 65 KRSPVPFVIHLDHGATIEDVMRAIRCG-FTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVE 126 (283)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 46789999874 566899999999987 789999988864 5668999999999999883
No 186
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=80.68 E-value=46 Score=30.80 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC-CeEEeCCC-CC-
Q 015161 223 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADES-CR- 299 (412)
Q Consensus 223 v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs-~~- 299 (412)
++.+++.+.++.+...-...+++++..++++.+.+++.....|-+-.-.-..+...++.+.+++..+ +||...=+ -.
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~G 193 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLG 193 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCcc
Confidence 4444445566666665666677777777777777766554566666655555555555555555555 66644211 11
Q ss_pred -CHHHHHHHHHcCCCCEE
Q 015161 300 -SLDDVKKIVKGNLADVI 316 (412)
Q Consensus 300 -~~~~~~~~i~~~a~d~v 316 (412)
........++.| ++.+
T Consensus 194 la~An~laA~~aG-a~~i 210 (237)
T PF00682_consen 194 LAVANALAALEAG-ADRI 210 (237)
T ss_dssp -HHHHHHHHHHTT--SEE
T ss_pred chhHHHHHHHHcC-CCEE
Confidence 122344455655 5664
No 187
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=80.44 E-value=18 Score=34.15 Aligned_cols=123 Identities=14% Similarity=0.154 Sum_probs=83.7
Q ss_pred cCCC-HHHHHHHHHHHHHcCCCEEeEe---cC------CChhHHHHHHHHHHHh--CCCcEE--EEeCCC--CCCHHHHH
Q 015161 186 PIVS-PAEAAELASKYRKQGFTTLKLK---VG------KNLKEDIEVLRAIRAV--HPDSSF--ILDANE--GYKPQEAV 249 (412)
Q Consensus 186 ~~~~-~~~~~~~~~~~~~~Gf~~~KiK---vG------~~~~~D~~~v~avr~~--~~~~~l--~vDaN~--~~~~~~A~ 249 (412)
+..+ +..+.+.++++.+.|...+-|- .| .++++-+++|++++++ .+++-| |-|+-. ....++|+
T Consensus 79 GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI 158 (238)
T PF13714_consen 79 GYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAI 158 (238)
T ss_dssp TSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHH
T ss_pred ccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHH
Confidence 3444 8899999999999999888763 33 2456777899999986 355443 678854 66789999
Q ss_pred HHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 250 EVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 250 ~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
+.++...+.|....|+|-+.. .+.++++.+ +.++|+..-.. .+..++.++-+.| +..+.
T Consensus 159 ~R~~aY~eAGAD~ifi~~~~~---~~~i~~~~~----~~~~Pl~v~~~-~~~~~~~eL~~lG-v~~v~ 217 (238)
T PF13714_consen 159 ERAKAYAEAGADMIFIPGLQS---EEEIERIVK----AVDGPLNVNPG-PGTLSAEELAELG-VKRVS 217 (238)
T ss_dssp HHHHHHHHTT-SEEEETTSSS---HHHHHHHHH----HHSSEEEEETT-SSSS-HHHHHHTT-ESEEE
T ss_pred HHHHHHHHcCCCEEEeCCCCC---HHHHHHHHH----hcCCCEEEEcC-CCCCCHHHHHHCC-CcEEE
Confidence 999999999876678888744 444677765 45788876553 3234566666666 44443
No 188
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=80.32 E-value=48 Score=30.46 Aligned_cols=109 Identities=17% Similarity=0.263 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEeEecCC--Chh--HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee--ec-
Q 015161 195 ELASKYRKQGFTTLKLKVGK--NLK--EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF--EQ- 267 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--~~~--~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i--Ee- 267 (412)
++++.+.+.|-..+=+-... .++ ...+.++++++.+ ++.++++.+ +++++. .+.+.++. |+ +-
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~---t~~ea~----~a~~~G~d--~i~~~~~ 152 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADIS---TLEEAL----NAAKLGFD--IIGTTLS 152 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECC---CHHHHH----HHHHcCCC--EEEccCc
Confidence 45667777898876664431 122 4556777888878 788888654 666653 34445653 55 20
Q ss_pred ---C----CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 268 ---P----VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 268 ---P----~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ ....+++.++++++ ..++||...=-+.+.+++.++++.| +|.+.+
T Consensus 153 g~t~~~~~~~~~~~~~l~~i~~----~~~ipvia~GGI~~~~~~~~~l~~G-adgV~v 205 (219)
T cd04729 153 GYTEETAKTEDPDFELLKELRK----ALGIPVIAEGRINSPEQAAKALELG-ADAVVV 205 (219)
T ss_pred cccccccCCCCCCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHCC-CCEEEE
Confidence 0 11234566666654 4579999988899999999999988 788755
No 189
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=80.25 E-value=13 Score=38.81 Aligned_cols=116 Identities=21% Similarity=0.328 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCEEeEecCCC-hhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCceee---
Q 015161 192 EAAELASKYRKQGFTTLKLKVGKN-LKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFE--- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~~-~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~~iE--- 266 (412)
+..+.++.+.++|-..+=+..... -..-++.++.||+.+|++.++. |.- |.++|...++ .|.. .|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~---t~~~a~~l~~----aGad--~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVV---TAEGTRDLVE----AGAD--IVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccC---CHHHHHHHHH----cCCC--EEEECc
Confidence 456777888889999987776532 2344567889999999988886 432 4566554443 3321 222
Q ss_pred -----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 -----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 -----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
-.+..-++....++++..+ ..++||.+|--+.+..|+.+++..|+ |.+++
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~-~~~~~via~ggi~~~~~~~~al~~ga-~~v~~ 358 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAAR-ELGAHVWADGGVRHPRDVALALAAGA-SNVMI 358 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHH-hcCCcEEecCCCCCHHHHHHHHHcCC-Ceeec
Confidence 1112236777777665332 46899999999999999999999884 55544
No 190
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=80.20 E-value=80 Score=32.94 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=73.5
Q ss_pred HHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa--N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.++...+.|...|.+-... +++.-...++.+++.|..+...++. ...++.+..+++++++.+.|.....|-+..---
T Consensus 100 fv~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l 179 (467)
T PRK14041 100 FVKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL 179 (467)
T ss_pred HHHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc
Confidence 3556667788887776653 2222223345555555544444432 234667778888888888777656777777766
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
......+|.+.++++.++||...=+.. .......++++| +|++..-++
T Consensus 180 ~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~ 230 (467)
T PRK14041 180 TPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAG-ADMFDTAIS 230 (467)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeecc
Confidence 666666666666666677775533221 233344555666 666544433
No 191
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=80.07 E-value=13 Score=34.61 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=60.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCC
Q 015161 235 FILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 235 l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~ 313 (412)
-.-+++...+++++..++..-+.+++++.|+|-==..-+.+-.+++++ .+ ++||..|=-+.+.++++++++.+ +
T Consensus 124 ~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~I~~v~~----~~~~~pl~vGGGIrs~e~a~~l~~aG-A 198 (219)
T cd02812 124 RVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEVVRAVKK----VLGDTPLIVGGGIRSGEQAKEMAEAG-A 198 (219)
T ss_pred eeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHHHHHHHH----hcCCCCEEEeCCCCCHHHHHHHHHcC-C
Confidence 345566677899999999999999988889992112245555666653 55 89999999999999999999877 5
Q ss_pred CEEEe
Q 015161 314 DVINI 318 (412)
Q Consensus 314 d~v~i 318 (412)
|.+.+
T Consensus 199 D~VVV 203 (219)
T cd02812 199 DTIVV 203 (219)
T ss_pred CEEEE
Confidence 77655
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=79.95 E-value=37 Score=32.47 Aligned_cols=94 Identities=13% Similarity=0.224 Sum_probs=47.2
Q ss_pred HHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHH
Q 015161 200 YRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGL 277 (412)
Q Consensus 200 ~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~-vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~ 277 (412)
+.+.|...+.+-+. .+++.-.+.++.+++.|-.+.+- .|+. +++++...++++.+.+++..-..+-+.+-.-..+..
T Consensus 91 a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~-~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v 169 (266)
T cd07944 91 ASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAIS-GYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDI 169 (266)
T ss_pred HhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeec-CCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHH
Confidence 34455555555443 22333333444445444433332 2332 366666666666666665543456666665555555
Q ss_pred HHhHHHhhcccC--CeEEe
Q 015161 278 GHVSHIAKDKFG--VSVAA 294 (412)
Q Consensus 278 ~~l~~~~~~~~~--ipIa~ 294 (412)
.++.+.+++..+ +||..
T Consensus 170 ~~lv~~l~~~~~~~~~i~~ 188 (266)
T cd07944 170 KRIISLLRSNLDKDIKLGF 188 (266)
T ss_pred HHHHHHHHHhcCCCceEEE
Confidence 555544444444 55533
No 193
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=79.93 E-value=61 Score=31.45 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
++++..+.++.+++.+.. .|+=-+.. ..++.++++++ .+++||..-+. .+.++.+.+.+.| +|.+.
T Consensus 127 ~~~~~~~~i~~~~~~g~~--~i~l~~~~p~~~~~~~~~~i~~l~~----~~~~pvivK~v-~s~~~a~~a~~~G-~d~I~ 198 (299)
T cd02809 127 DREITEDLLRRAEAAGYK--ALVLTVDTPVLGRRLTWDDLAWLRS----QWKGPLILKGI-LTPEDALRAVDAG-ADGIV 198 (299)
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEecCCCCCCCCCCHHHHHHHHH----hcCCCEEEeec-CCHHHHHHHHHCC-CCEEE
Confidence 455555555555555542 44421111 23455666653 56789988764 7788888888877 78876
Q ss_pred ecCC--C---CcHHHHHHHHHHHHHc--CCcEEEccCcchHHHHHHHHH
Q 015161 318 IKLA--K---VGVLGALEIIEVVRAS--GLNLMIGGMVETRLAMGFAGH 359 (412)
Q Consensus 318 ik~~--~---~Git~~l~i~~~A~~~--gi~~~~~~~~es~i~~~a~~h 359 (412)
+.-. + .|+..+.-+.++++.. ++++...+-+.++.....++.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~ 247 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALA 247 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHH
Confidence 6431 1 2333344455555555 489888776666554444443
No 194
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=79.77 E-value=18 Score=35.97 Aligned_cols=57 Identities=11% Similarity=0.155 Sum_probs=46.7
Q ss_pred cccC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCC---------c--HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKV---------G--VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~-ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~---------G--it~~l~i~~~A~~~gi~~~ 343 (412)
++.. +||++.- ...+.+.+.++++.| ++-+.+|-+.. - +..++++.++|+.+|+.|-
T Consensus 69 e~~~~VPValHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVE 138 (347)
T TIGR01521 69 EEYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVE 138 (347)
T ss_pred HhCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 3554 8999864 567899999999997 78999998864 2 6678999999999999873
No 195
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=79.57 E-value=65 Score=34.68 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa--N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
...++...+.|...|.+-... +++.-...++.+++.|..+...+.. ...++++..+++++++.+.|.....|=+-.-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (592)
T PRK09282 99 EKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAG 178 (592)
T ss_pred HHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCC
Confidence 344555667788887776652 3333333455556655544433332 2346778888888888887766556777666
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCC---CCHHHHHHHHHcCCCCEEEecCC
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESC---RSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~---~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
--......+|.+.++++.++||...=+. ........++++| +|++..-++
T Consensus 179 ~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aG-ad~vD~ai~ 231 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAG-VDIIDTAIS 231 (592)
T ss_pred CcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhC-CCEEEeecc
Confidence 5556666666666666667777553221 2233445566666 566554443
No 196
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.47 E-value=69 Score=33.47 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee----
Q 015161 192 EAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 266 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---- 266 (412)
+..+.++.+.++|.+.+=+..- ...+.-++.++.|++.+|++.+++| ..-|.+++....+ .|.. .|-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g--~~~t~~~~~~l~~----~G~d--~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAG--NVVSAEGVRDLLE----AGAN--IIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEe--ccCCHHHHHHHHH----hCCC--EEEECCc
Confidence 4457788888999999888775 3345666778999998999999983 2445666654443 3432 332
Q ss_pred -------c---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 -------Q---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 -------e---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
. .+..-......++.+.++ ..++||.+|--+.+..|+.+++..|+ |.+.+
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA-~~vm~ 356 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGA-SNVMV 356 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCC-CEEee
Confidence 0 111112333334433222 34899999999999999999999885 55544
No 197
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=79.24 E-value=96 Score=33.33 Aligned_cols=162 Identities=20% Similarity=0.307 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC--C------hhHHHHHHHHHHHhCCCcEEEEe---CC-CCCC--HHHH-HHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK--N------LKEDIEVLRAIRAVHPDSSFILD---AN-EGYK--PQEA-VEVLE 253 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~--~------~~~D~~~v~avr~~~~~~~l~vD---aN-~~~~--~~~A-~~~~~ 253 (412)
+.++..+.+..+.+.||..+-+--|. + -+.+.++++.+++..++..+..= .| -+|. +++. ..+++
T Consensus 19 ~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 19 RTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 56777888888889999999985331 1 13578899999998777666432 33 2442 4554 34777
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC--CC---CCCHHHH----HHHHHcCCCCEEEecCCCCc
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD--ES---CRSLDDV----KKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d--Es---~~~~~~~----~~~i~~~a~d~v~ik~~~~G 324 (412)
+..+.++...-+=.++. |.+.+....+..+ ..+.-+... .+ .++.+.+ +++.+.| +|.+.++=+- |
T Consensus 99 ~a~~~Gvd~irif~~ln--d~~n~~~~i~~ak-~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~G-ad~I~i~Dt~-G 173 (582)
T TIGR01108 99 KAVENGMDVFRIFDALN--DPRNLQAAIQAAK-KHGAHAQGTISYTTSPVHTLETYLDLAEELLEMG-VDSICIKDMA-G 173 (582)
T ss_pred HHHHCCCCEEEEEEecC--cHHHHHHHHHHHH-HcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcC-CCEEEECCCC-C
Confidence 77777776445666664 3444444333333 234444332 11 2344443 3344555 6888777554 5
Q ss_pred -H--HHHHHHHHHH-HHcCCcEEEccCcchHHHHH
Q 015161 325 -V--LGALEIIEVV-RASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 325 -i--t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~ 355 (412)
+ ..+.+++... +..++++.+|+...++++.+
T Consensus 174 ~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 174 ILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEM 208 (582)
T ss_pred CcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHH
Confidence 3 3455555444 45688888888655554443
No 198
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=79.04 E-value=37 Score=33.73 Aligned_cols=141 Identities=11% Similarity=0.036 Sum_probs=75.2
Q ss_pred HHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEE-EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 197 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFI-LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~-vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
++.+.+.|.+.+.+-... +.+.-.+.++.+|+.|.++.+. .|+ ..+++++..++++.+.+++..-.+|-+-.-.-..
T Consensus 94 l~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P 172 (337)
T PRK08195 94 LKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLP 172 (337)
T ss_pred HHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCH
Confidence 344556677777765542 2223344566666666554433 344 5667777777888877777654567777666555
Q ss_pred HHHHHhHHHhhccc--CCeEEeCCCC-CC--HHHHHHHHHcCCCCEEEecCCCCc---H---HHHHHHHHHHHHcCCc
Q 015161 275 EGLGHVSHIAKDKF--GVSVAADESC-RS--LDDVKKIVKGNLADVINIKLAKVG---V---LGALEIIEVVRASGLN 341 (412)
Q Consensus 275 ~~~~~l~~~~~~~~--~ipIa~dEs~-~~--~~~~~~~i~~~a~d~v~ik~~~~G---i---t~~l~i~~~A~~~gi~ 341 (412)
+...++.+.+++.. ++||...=.. .+ ......++++| ++. +|.+-.| - +.+-.++.+.+..|+.
T Consensus 173 ~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aG-a~~--iD~Sl~GlG~~aGN~~tE~lv~~L~~~g~~ 247 (337)
T PRK08195 173 EDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAG-ATR--IDGSLAGLGAGAGNTPLEVLVAVLDRMGWE 247 (337)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhC-CCE--EEecChhhcccccCccHHHHHHHHHhcCCC
Confidence 55665555555554 4666443211 11 22334455555 454 4544433 1 1233344455555544
No 199
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=79.03 E-value=42 Score=29.21 Aligned_cols=112 Identities=21% Similarity=0.145 Sum_probs=69.3
Q ss_pred HHHHHHcCCCEEeEecCCC--hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc-----eeecCC
Q 015161 197 ASKYRKQGFTTLKLKVGKN--LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-----LFEQPV 269 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~--~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~-----~iEeP~ 269 (412)
+..+.+.|+..+-+..+.. ++...+.++++++..+++.+.+..+.....+.+. +.+.++... +.++..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~-----~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAA-----AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhh-----HHHcCCCEEEEcCCcCCCCC
Confidence 4566778999998887632 2446778889998777777777776555444331 344443211 222221
Q ss_pred CCCCH---HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 270 HRDDW---EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 270 ~~~d~---~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
...+. ...+.+ +...++||..+--+.+.+++.++++.| +|++.+
T Consensus 152 ~~~~~~~~~~~~~~----~~~~~~pi~~~GGi~~~~~~~~~~~~G-ad~v~v 198 (200)
T cd04722 152 RDAVPIADLLLILA----KRGSKVPVIAGGGINDPEDAAEALALG-ADGVIV 198 (200)
T ss_pred ccCchhHHHHHHHH----HhcCCCCEEEECCCCCHHHHHHHHHhC-CCEEEe
Confidence 11111 112222 235689999988889989999999886 787754
No 200
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=78.78 E-value=46 Score=34.48 Aligned_cols=110 Identities=17% Similarity=0.318 Sum_probs=66.6
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCC-CCC---CHHHHHHhHHHhhcc-cCCeEEeCCCCCCHHHHHHH
Q 015161 233 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV-HRD---DWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKI 307 (412)
Q Consensus 233 ~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~-~~~---d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~ 307 (412)
-+++|++.-+-+.+. .+.++.|-+.++. .|+==+ +.+ -++..++++ +. .++||.++ ++.+.++.+.+
T Consensus 211 g~l~V~aav~~~~~~-~~r~~~L~~aG~d--~I~vd~a~g~~~~~~~~i~~i~----~~~~~~~vi~G-~v~t~~~a~~l 282 (450)
T TIGR01302 211 GRLIVGAAVGTREFD-KERAEALVKAGVD--VIVIDSSHGHSIYVIDSIKEIK----KTYPDLDIIAG-NVATAEQAKAL 282 (450)
T ss_pred CCEEEEEEecCchhH-HHHHHHHHHhCCC--EEEEECCCCcHhHHHHHHHHHH----HhCCCCCEEEE-eCCCHHHHHHH
Confidence 456777665554433 4555566666664 555222 111 123344443 34 46898885 56889999999
Q ss_pred HHcCCCCEEEecC-------C----CCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 308 VKGNLADVINIKL-------A----KVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 308 i~~~a~d~v~ik~-------~----~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
++.| +|++.+-+ + -+| ++...++++.|++++++++..+-+.++
T Consensus 283 ~~aG-ad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~ 339 (450)
T TIGR01302 283 IDAG-ADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYS 339 (450)
T ss_pred HHhC-CCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCH
Confidence 9987 68875432 1 134 234466788888999999995443333
No 201
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=78.61 E-value=30 Score=34.50 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=46.2
Q ss_pred ccC-CeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCC-------c----HHHHHHHHHHHHHcCCcEE
Q 015161 287 KFG-VSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKV-------G----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 287 ~~~-ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~-------G----it~~l~i~~~A~~~gi~~~ 343 (412)
+.. +||+..- ...+.+.+.++++.| ++-+.+|-+.. - +..++++.++|+++|+.+-
T Consensus 72 ~~~~VPValHLDHg~~~e~i~~ai~~G-ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VE 140 (347)
T PRK09196 72 EYPHIPVVMHQDHGNSPATCQRAIQLG-FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVE 140 (347)
T ss_pred hCCCCcEEEECCCCCCHHHHHHHHHcC-CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 454 8998864 567889999999987 79999998876 2 6678999999999999874
No 202
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=78.41 E-value=46 Score=31.78 Aligned_cols=136 Identities=18% Similarity=0.219 Sum_probs=73.2
Q ss_pred eceeecCCCHHHHHHHHHHHHHcCCCEEeEecC----------------------CChhHHHHHHHHHHHhCCCcE--EE
Q 015161 181 TDITIPIVSPAEAAELASKYRKQGFTTLKLKVG----------------------KNLKEDIEVLRAIRAVHPDSS--FI 236 (412)
Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG----------------------~~~~~D~~~v~avr~~~~~~~--l~ 236 (412)
.|.+.+.-+.+...+.+..+.+.|-..+.+-+- .++++-.+.++.+|+..+++. +|
T Consensus 14 ~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm 93 (259)
T PF00290_consen 14 PYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLM 93 (259)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEE
Confidence 455556666666666666666667777766553 123344455666664444433 34
Q ss_pred EeCCCC------------------------CCHHHHHHHHHHHHcCCCCCceeecCCCCCC-------------------
Q 015161 237 LDANEG------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD------------------- 273 (412)
Q Consensus 237 vDaN~~------------------------~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d------------------- 273 (412)
-=.|.- +..+++.++.+.++++++.+.++=.|..+++
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~ 173 (259)
T PF00290_consen 94 TYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRM 173 (259)
T ss_dssp E-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSS
T ss_pred eeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccC
Confidence 444421 1235555666666666666555555532211
Q ss_pred ---------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 274 ---------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 274 ---------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
...+.+.-+.+|+.+++||+.|--+.+.++++.+. ..+|++.+
T Consensus 174 GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIV 225 (259)
T PF00290_consen 174 GVTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIV 225 (259)
T ss_dssp SSSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEE
T ss_pred CCCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEE
Confidence 12233333344556778888888888888888877 34677754
No 203
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=78.39 E-value=39 Score=35.34 Aligned_cols=114 Identities=18% Similarity=0.320 Sum_probs=69.7
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC--CCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHH
Q 015161 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH--RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 232 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~--~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 308 (412)
+-+++++++-+-++ +..+.++.|.+.++...-++.+=. ..-++..+++ +.+. ++||..+ .+.+.++.+.++
T Consensus 214 ~g~l~V~aai~~~~-~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i----~~~~p~~~vi~g-~v~t~e~a~~l~ 287 (486)
T PRK05567 214 QGRLRVGAAVGVGA-DNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREI----KAKYPDVQIIAG-NVATAEAARALI 287 (486)
T ss_pred CCCEEEEeecccCc-chHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHH----HhhCCCCCEEEe-ccCCHHHHHHHH
Confidence 34678888776655 336677777777776444443311 1112333434 3454 7898775 568899999999
Q ss_pred HcCCCCEEEec-----------CCCCc---HHHHHHHHHHHHHcCCcEEEccCcchHH
Q 015161 309 KGNLADVINIK-----------LAKVG---VLGALEIIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 309 ~~~a~d~v~ik-----------~~~~G---it~~l~i~~~A~~~gi~~~~~~~~es~i 352 (412)
+.| +|++.+- ..-+| ++...++++.|++.+++++..+-+.++.
T Consensus 288 ~aG-ad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~ 344 (486)
T PRK05567 288 EAG-ADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSG 344 (486)
T ss_pred HcC-CCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHH
Confidence 987 6887531 11223 2234456667777899999966554543
No 204
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=77.86 E-value=22 Score=35.40 Aligned_cols=57 Identities=9% Similarity=0.182 Sum_probs=46.5
Q ss_pred ccc-CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCC-----------cHHHHHHHHHHHHHcCCcEE
Q 015161 286 DKF-GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKV-----------GVLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~-~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~-----------Git~~l~i~~~A~~~gi~~~ 343 (412)
++. .+||++.- ...+.+.+.++++.| ++-+.+|.+.. =+..++++.++|+++|+.+-
T Consensus 71 e~~~~VPVaLHLDHg~~~e~i~~Ai~~G-FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVE 140 (347)
T PRK13399 71 EMYPDIPICLHQDHGNSPATCQSAIRSG-FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVE 140 (347)
T ss_pred HhcCCCcEEEECCCCCCHHHHHHHHhcC-CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 355 48999874 566889999999988 78999998854 15678999999999999874
No 205
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=77.82 E-value=48 Score=33.85 Aligned_cols=153 Identities=13% Similarity=0.144 Sum_probs=87.6
Q ss_pred eeceeecCC-CHHHHHHHHHHHHHcCCCEEeEecC-C--------------ChhHHHHHHHHHHHhCCCcEEEEeCCCCC
Q 015161 180 TTDITIPIV-SPAEAAELASKYRKQGFTTLKLKVG-K--------------NLKEDIEVLRAIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 180 ~~~~~i~~~-~~~~~~~~~~~~~~~Gf~~~KiKvG-~--------------~~~~D~~~v~avr~~~~~~~l~vDaN~~~ 243 (412)
|+..++... ++++..+.++.+.+.|+..|-+-++ + +++.-.+.++++++.. ++.+.|=-.-
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p-- 177 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS-RLPVIVKLTP-- 177 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc-CCcEEEEcCC--
Confidence 334455454 6788888888887889999998876 2 1222334456666542 3445544432
Q ss_pred CHHHHHHHHHHHHcCCCCCc------------eee----cC-CCCC--------------CHHHHHHhHHHhhccc---C
Q 015161 244 KPQEAVEVLEKLYEMGVTPV------------LFE----QP-VHRD--------------DWEGLGHVSHIAKDKF---G 289 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~------------~iE----eP-~~~~--------------d~~~~~~l~~~~~~~~---~ 289 (412)
+..+...+++.+++.++.-. .+| .| ++.. .++..++++ +.. +
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~----~~~~~~~ 253 (420)
T PRK08318 178 NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIA----RDPETRG 253 (420)
T ss_pred CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHH----hccccCC
Confidence 22334567777777664310 112 13 2110 133344443 333 7
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC--cH--H-H-HHHHHHHHHHcCC
Q 015161 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--GV--L-G-ALEIIEVVRASGL 340 (412)
Q Consensus 290 ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~--Gi--t-~-~l~i~~~A~~~gi 340 (412)
+||.+-=-+.+.+|+.+++..| +|.+|+=-.-+ |. . . ...+.++.+++|+
T Consensus 254 ipIig~GGI~s~~da~e~i~aG-A~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g~ 309 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFILLG-AGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKGF 309 (420)
T ss_pred CCEEeecCcCCHHHHHHHHHhC-CChheeeeeeccCCchhHHHHHHHHHHHHHHcCc
Confidence 9999988899999999999977 57887653322 41 1 2 1234455666664
No 206
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=77.62 E-value=32 Score=32.83 Aligned_cols=99 Identities=15% Similarity=0.306 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 241 EGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 241 ~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
..|+.++-+++++.|.+.|+. .||=-.| +.+.+..+.+.+. .....+.. =...+.+++.++.+.| ++.+.
T Consensus 17 ~~~s~~~k~~i~~~L~~~Gv~--~IEvG~P~~~~~~~~~~~~l~~~---~~~~~v~~-~~r~~~~di~~a~~~g-~~~i~ 89 (262)
T cd07948 17 AFFDTEDKIEIAKALDAFGVD--YIELTSPAASPQSRADCEAIAKL---GLKAKILT-HIRCHMDDARIAVETG-VDGVD 89 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHhC---CCCCcEEE-EecCCHHHHHHHHHcC-cCEEE
Confidence 357899999999999999985 9998333 2334444444321 11223322 2467888999999876 67766
Q ss_pred ecCC----------CCc----HHHHHHHHHHHHHcCCcEEEcc
Q 015161 318 IKLA----------KVG----VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 318 ik~~----------~~G----it~~l~i~~~A~~~gi~~~~~~ 346 (412)
+=.. +.. +..+.+++++|+++|+.+..+.
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ 132 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS 132 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5221 112 3346677899999999987764
No 207
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=77.47 E-value=49 Score=32.15 Aligned_cols=116 Identities=21% Similarity=0.315 Sum_probs=73.7
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc----EE--E--------EeC-CCCCC-HHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF--I--------LDA-NEGYK-PQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~----~l--~--------vDa-N~~~~-~~~A~~~~~~l 255 (412)
+.+.+..+.||+.+=+.-. .++++.+++-+.+.+. . -++ +| . .+. ...|| +++|.+|+++.
T Consensus 91 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~T 170 (288)
T TIGR00167 91 EDCAQAVKAGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLT 170 (288)
T ss_pred HHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhcc
Confidence 4455667789999999876 4677777776666552 1 111 11 1 111 12364 99999999864
Q ss_pred H----------cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y----------EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~----------~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. -.|+ |-..|-. -|++-++++++ .+++|+.+ |=|=...++++++++.|.+- +|+.
T Consensus 171 gvD~LAvaiGt~HG~---y~~~p~~-Ld~~~L~~I~~----~v~vPLVlHGgSG~~~e~~~~ai~~Gi~K-iNi~ 236 (288)
T TIGR00167 171 GVDSLAAAIGNVHGV---YKGEPKG-LDFERLEEIQK----YVNLPLVLHGGSGIPDEEIKKAISLGVVK-VNID 236 (288)
T ss_pred CCcEEeeccCccccc---cCCCCCc-cCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCeE-EEcC
Confidence 2 1233 4444432 47888888875 57899877 55666778899999988443 3443
No 208
>PRK00208 thiG thiazole synthase; Reviewed
Probab=77.34 E-value=67 Score=30.46 Aligned_cols=121 Identities=21% Similarity=0.210 Sum_probs=75.2
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCC----hhHHHHHHHHHHHh-CCCcEEE-EeCCCCCCHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN----LKEDIEVLRAIRAV-HPDSSFI-LDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~----~~~D~~~v~avr~~-~~~~~l~-vDaN~~~~~~~A~~~~~~l 255 (412)
.+.+..+.+|....++-.++. |-.-+|+.|=.| +.+..+.|++.++. -.++..+ + +.=++ ..+++|
T Consensus 68 NTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpy---c~~d~----~~ak~l 140 (250)
T PRK00208 68 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPY---CTDDP----VLAKRL 140 (250)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEE---eCCCH----HHHHHH
Confidence 355677888875555544443 567899987533 22445667777765 3444444 2 11133 445666
Q ss_pred HcCCCCCceeecC----CC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 256 YEMGVTPVLFEQP----VH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 256 ~~~~l~~~~iEeP----~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++++.. .+ -| +. ..+.+-++.+++ ..++||..|=-+.+++|+.++++.| +|.+.+
T Consensus 141 ~~~G~~--~v-mPlg~pIGsg~gi~~~~~i~~i~e----~~~vpVIveaGI~tpeda~~AmelG-AdgVlV 203 (250)
T PRK00208 141 EEAGCA--AV-MPLGAPIGSGLGLLNPYNLRIIIE----QADVPVIVDAGIGTPSDAAQAMELG-ADAVLL 203 (250)
T ss_pred HHcCCC--Ee-CCCCcCCCCCCCCCCHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 667653 55 33 11 123555666653 4689999999999999999999998 566644
No 209
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=77.27 E-value=78 Score=31.63 Aligned_cols=99 Identities=20% Similarity=0.269 Sum_probs=59.0
Q ss_pred HHHHHHHHHhCCCcEEEEeCC----CCCCHHHHHHHHHHHHcCCCCC--cee-e--cCCCCCCHHHHHHhHHHhhcccCC
Q 015161 220 IEVLRAIRAVHPDSSFILDAN----EGYKPQEAVEVLEKLYEMGVTP--VLF-E--QPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 220 ~~~v~avr~~~~~~~l~vDaN----~~~~~~~A~~~~~~l~~~~l~~--~~i-E--eP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
.+.++.+|+..|+..+.+--+ ..|+++++.+.++.++...+.+ ... | +|-...|++++-+.-+.+++..++
T Consensus 108 ~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~v 187 (352)
T PRK05437 108 ADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPV 187 (352)
T ss_pred HHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCC
Confidence 456777888766665544322 3788898888777775432210 010 2 444444665433333334456789
Q ss_pred eEEeCCC--CCCHHHHHHHHHcCCCCEEEec
Q 015161 291 SVAADES--CRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 291 pIa~dEs--~~~~~~~~~~i~~~a~d~v~ik 319 (412)
||..=|+ ..+.++++.+.+.| +|++.+.
T Consensus 188 PVivK~~g~g~s~~~a~~l~~~G-vd~I~Vs 217 (352)
T PRK05437 188 PVIVKEVGFGISKETAKRLADAG-VKAIDVA 217 (352)
T ss_pred CEEEEeCCCCCcHHHHHHHHHcC-CCEEEEC
Confidence 9997554 24577777777766 7888773
No 210
>PRK12999 pyruvate carboxylase; Reviewed
Probab=77.22 E-value=82 Score=36.77 Aligned_cols=167 Identities=18% Similarity=0.261 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHHHHc--CCCEEeEecCC--------ChhHHHHHHHHHHHhCCCcEEEEeCC----CCCC--HHHHH-HH
Q 015161 189 SPAEAAELASKYRKQ--GFTTLKLKVGK--------NLKEDIEVLRAIRAVHPDSSFILDAN----EGYK--PQEAV-EV 251 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~--Gf~~~KiKvG~--------~~~~D~~~v~avr~~~~~~~l~vDaN----~~~~--~~~A~-~~ 251 (412)
+.+++...+..+.+. ||..+.+--|. --+.+.++++.+|+..|+..|.+=.. -+|+ ++..+ .|
T Consensus 553 ~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~ 632 (1146)
T PRK12999 553 RTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAF 632 (1146)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHH
Confidence 346777788888888 99998877651 12468999999999988766543222 2565 34443 46
Q ss_pred HHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC----CeEEeC-------CCCCCHHHH----HHHHHcCCCCEE
Q 015161 252 LEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG----VSVAAD-------ESCRSLDDV----KKIVKGNLADVI 316 (412)
Q Consensus 252 ~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~----ipIa~d-------Es~~~~~~~----~~~i~~~a~d~v 316 (412)
++...+.++.+.-|=+++. |.+.+....+..++. + +-|+.- ...++++-+ +++.+.| +|.+
T Consensus 633 i~~a~~~Gid~~rifd~ln--d~~~~~~~i~~vk~~-g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G-a~~i 708 (1146)
T PRK12999 633 VREAAAAGIDVFRIFDSLN--WVENMRVAIDAVRET-GKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG-AHIL 708 (1146)
T ss_pred HHHHHHcCCCEEEEeccCC--hHHHHHHHHHHHHHc-CCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC-CCEE
Confidence 8888888877566667665 355555544443332 3 233221 223455533 3444555 7888
Q ss_pred EecCCCCc-HH--HHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 317 NIKLAKVG-VL--GALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 317 ~ik~~~~G-it--~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
.+|=+- | ++ .+.+++...+ +.++++.+|+...+++ +.+..++|
T Consensus 709 ~ikDt~-G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gl--a~an~laA 755 (1146)
T PRK12999 709 AIKDMA-GLLKPAAAYELVSALKEEVDLPIHLHTHDTSGN--GLATYLAA 755 (1146)
T ss_pred EECCcc-CCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCch--HHHHHHHH
Confidence 888654 6 43 4555544443 4589999988654444 44444544
No 211
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=77.20 E-value=11 Score=37.42 Aligned_cols=99 Identities=18% Similarity=0.270 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
-+.+..++-+.+|++.|-. .+==-++. ++.+.++++++.++ ..+.+|+.+|=. ++..-...+++. +|-+.+.|
T Consensus 28 ~Dv~atv~QI~~L~~aGce--ivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIH-Fd~~lAl~a~~~--v~kiRINP 102 (359)
T PF04551_consen 28 RDVEATVAQIKRLEEAGCE--IVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIH-FDYRLALEAIEA--VDKIRINP 102 (359)
T ss_dssp T-HHHHHHHHHHHHHCT-S--EEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEES-TTCHHHHHHHHC---SEEEE-T
T ss_pred ccHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecC-CCHHHHHHHHHH--hCeEEECC
Confidence 3456666777777777653 33322322 23455566554322 137899999966 445555556654 99999999
Q ss_pred CCC--------c-HH-HHHHHHHHHHHcCCcEEEcc
Q 015161 321 AKV--------G-VL-GALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 321 ~~~--------G-it-~~l~i~~~A~~~gi~~~~~~ 346 (412)
..+ | +. ...+++..|+++|+++-+|.
T Consensus 103 GNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGv 138 (359)
T PF04551_consen 103 GNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGV 138 (359)
T ss_dssp TTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CcccccccccccchHHHHHHHHHHHHHCCCCEEEec
Confidence 999 7 45 57789999999999998754
No 212
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.11 E-value=63 Score=33.77 Aligned_cols=61 Identities=23% Similarity=0.392 Sum_probs=43.1
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEE----e-------cCCCCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVIN----I-------KLAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~----i-------k~~~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+++|.+| ++.+.+..+.+++.| +|++. + ..+-+| ++...++++.|+++|++++.-+-+.++
T Consensus 268 ~~~v~ag-nv~t~~~a~~l~~aG-ad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~ 342 (479)
T PRK07807 268 GVPIVAG-NVVTAEGTRDLVEAG-ADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHP 342 (479)
T ss_pred CCeEEee-ccCCHHHHHHHHHcC-CCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCH
Confidence 5888887 457888999999988 78875 2 122234 455667788888999999886654443
No 213
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.04 E-value=58 Score=31.59 Aligned_cols=115 Identities=19% Similarity=0.336 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc----EE----------EEeCC-CCC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF----------ILDAN-EGY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~----~l----------~vDaN-~~~-~~~~A~~~~~~l 255 (412)
+.+.++.+.||+.+=+.-. -++++.+++-+.+.+. . -++ +| ..+.+ ..| ++++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~T 167 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEET 167 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHH
Confidence 3455667789999999876 4567777776666542 1 111 11 11212 226 499999999875
Q ss_pred Hc----------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 YE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.- .|+ |-.+| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.+- +|+.
T Consensus 168 gvD~LAvaiGt~HG~---y~~~p--~Ld~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~K-iNi~ 232 (284)
T PRK12857 168 GVDALAIAIGTAHGP---YKGEP--KLDFDRLAKIKE----LVNIPIVLHGSSGVPDEAIRKAISLGVRK-VNID 232 (284)
T ss_pred CCCEEeeccCccccc---cCCCC--cCCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCeE-EEeC
Confidence 31 333 44444 567888888875 56889876 56777788899999988443 4554
No 214
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=76.59 E-value=65 Score=33.67 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcc-cCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 234 ~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
++++++--+.. ++..+.++.|-+.++....+ +.-+... +...++.+.++.. .++||.+| ++.+.+..+.+++.|
T Consensus 213 rl~Vgaav~~~-~~~~~ra~~Lv~aGVd~i~~-D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g-~~~t~~~~~~l~~~G- 287 (475)
T TIGR01303 213 RLRIGAAVGIN-GDVGGKAKALLDAGVDVLVI-DTAHGHQ-VKMISAIKAVRALDLGVPIVAG-NVVSAEGVRDLLEAG- 287 (475)
T ss_pred CceehheeeeC-ccHHHHHHHHHHhCCCEEEE-eCCCCCc-HHHHHHHHHHHHHCCCCeEEEe-ccCCHHHHHHHHHhC-
Confidence 44444443332 23345666666666542222 3333222 2222222222323 36899886 567888999999987
Q ss_pred CCEEEe-----------cCCCCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 313 ADVINI-----------KLAKVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 313 ~d~v~i-----------k~~~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+|++.+ ..+-+| ++..+++++.|+++|++++-.+-+-++
T Consensus 288 ~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~ 340 (475)
T TIGR01303 288 ANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHP 340 (475)
T ss_pred CCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCH
Confidence 588751 122235 445677888889999999887766444
No 215
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=76.26 E-value=1.2e+02 Score=32.75 Aligned_cols=149 Identities=10% Similarity=0.054 Sum_probs=95.3
Q ss_pred HHHH-HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCC----cEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 190 PAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD----SSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 190 ~~~~-~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~----~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
|+++ ...++...+.|...|.+--. .+++.-...++++++.|-. +.++. +-.+|++..+++++++.++|....
T Consensus 94 ~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~--sp~~t~e~~~~~ak~l~~~Gad~I 171 (596)
T PRK14042 94 ADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTT--SPVHTLDNFLELGKKLAEMGCDSI 171 (596)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecC--CCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4444 44667778899999887654 3444444567888887643 22444 447899999999999999988767
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCC---HHHHHHHHHcCCCCEEEecCCCCc-H---HHHHHHHHHHH
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS---LDDVKKIVKGNLADVINIKLAKVG-V---LGALEIIEVVR 336 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~---~~~~~~~i~~~a~d~v~ik~~~~G-i---t~~l~i~~~A~ 336 (412)
.|-+..---......+|.+.+++..++||...=+.+. ......++++| +|++-.-+.-+| - ..+-.++...+
T Consensus 172 ~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaG-ad~iD~ai~glGg~tGn~~tE~lv~~L~ 250 (596)
T PRK14042 172 AIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAG-CNHIDTAISSFSGGASHPPTEALVAALT 250 (596)
T ss_pred EeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhC-CCEEEeccccccCCCCcHhHHHHHHHHH
Confidence 8888877666666777766677777899976533222 23345566666 677644444333 2 22334455555
Q ss_pred HcCCc
Q 015161 337 ASGLN 341 (412)
Q Consensus 337 ~~gi~ 341 (412)
..|+.
T Consensus 251 ~~g~~ 255 (596)
T PRK14042 251 DTPYD 255 (596)
T ss_pred hcCCC
Confidence 55543
No 216
>PRK09234 fbiC FO synthase; Reviewed
Probab=76.15 E-value=22 Score=39.85 Aligned_cols=127 Identities=19% Similarity=0.169 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHH----HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDI----EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~----~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+++++.+.++++.+.|.+.|-+--|.+++.+. +.+++|++.+|++.+- +|++.|-..+ ....++.
T Consensus 558 s~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~-----afsp~Ei~~~---a~~~Gl~--- 626 (843)
T PRK09234 558 SLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH-----AFSPMEIVNG---AARLGLS--- 626 (843)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE-----ecChHHHHHH---HHHcCCC---
Confidence 67899999999999999999998675443333 4478888888887763 4555543322 2223331
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
+| +-+++|++. .-..+|-.. +.+.+. ++++ ++.+.|+....++++++.|++.|+++..
T Consensus 627 ~~--------e~l~~LkeA--GLds~pgt~-aeil~d-~vr~----------~i~p~k~~~~~wle~i~~Ah~lGi~~~s 684 (843)
T PRK09234 627 IR--------EWLTALREA--GLDTIPGTA-AEILDD-EVRW----------VLTKGKLPTAEWIEVVTTAHEVGLRSSS 684 (843)
T ss_pred HH--------HHHHHHHHh--CcCccCCCc-hhhCCH-HHHh----------hcCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 11 234555431 122344222 222221 2321 1334455556788999999999999765
Q ss_pred ccCc
Q 015161 345 GGMV 348 (412)
Q Consensus 345 ~~~~ 348 (412)
+.|+
T Consensus 685 tmm~ 688 (843)
T PRK09234 685 TMMY 688 (843)
T ss_pred ceEE
Confidence 5443
No 217
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=75.55 E-value=50 Score=33.47 Aligned_cols=99 Identities=18% Similarity=0.223 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCC--------------CCCHHHHHHhH
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH--------------RDDWEGLGHVS 281 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~--------------~~d~~~~~~l~ 281 (412)
++.-++.++.+++..|++.+.+-..+..+.++..++++++++.+. .+||==++ ..+.+..+++.
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~Ga--D~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~ 174 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGV--DALEINFSCPHGMPERKMGAAVGQDCDLLEEVC 174 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCC--CEEEEECCCCCCCCcCccchhhccCHHHHHHHH
Confidence 444444555555556777888777777888888889999988875 48884332 13456676766
Q ss_pred HHhhcccCCeEEeCC--CCCCHHHHHHHHHcCCCCEE
Q 015161 282 HIAKDKFGVSVAADE--SCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 282 ~~~~~~~~ipIa~dE--s~~~~~~~~~~i~~~a~d~v 316 (412)
+..++.+.+||..== .+.+..++.+.+....+|.+
T Consensus 175 ~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi 211 (385)
T PLN02495 175 GWINAKATVPVWAKMTPNITDITQPARVALKSGCEGV 211 (385)
T ss_pred HHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCCEE
Confidence 656656678876543 34456666664443334444
No 218
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=75.32 E-value=39 Score=33.77 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecC--CCC-------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQP--VHR-------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP--~~~-------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
.++.++=+++++.|.+.|+. .||-- .++ ++.+.++.+.+ ..++.+. ..+.+..|+.++++.+
T Consensus 64 ~~s~e~Ki~ia~~L~~~GV~--~IEvGs~vspk~vPqmad~~ev~~~i~~----~~~~~~~--~l~~n~~die~A~~~g- 134 (347)
T PLN02746 64 IVPTSVKVELIQRLVSSGLP--VVEATSFVSPKWVPQLADAKDVMAAVRN----LEGARFP--VLTPNLKGFEAAIAAG- 134 (347)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEECCCcCcccccccccHHHHHHHHHh----ccCCcee--EEcCCHHHHHHHHHcC-
Confidence 57889989999999999985 89953 332 33333444432 1222221 1235899999999987
Q ss_pred CCEEEecCC----------CCc----HHHHHHHHHHHHHcCCcEE
Q 015161 313 ADVINIKLA----------KVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 313 ~d~v~ik~~----------~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.+.+=+. +.. +....+++++|+++|+.+.
T Consensus 135 ~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 135 AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 565544311 122 2335579999999999884
No 219
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=74.97 E-value=85 Score=30.53 Aligned_cols=104 Identities=15% Similarity=0.125 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEe-------cC---------CChhHHHHHHHHHHHh--CCCcEE--EEeCC-CCCCH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLK-------VG---------KNLKEDIEVLRAIRAV--HPDSSF--ILDAN-EGYKP 245 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG---------~~~~~D~~~v~avr~~--~~~~~l--~vDaN-~~~~~ 245 (412)
..++.++.+-++++.+.|...+-|- .| .++++-+++|++++++ .+++-| |.|+- .....
T Consensus 86 yG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~ 165 (290)
T TIGR02321 86 FGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQ 165 (290)
T ss_pred CCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCH
Confidence 3444567788888998898777662 11 1344556788888886 455444 57876 45678
Q ss_pred HHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 246 QEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 246 ~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
++|++.++...+.|-...|+|-|+ .+.+.++++.+.+ ...+|+..
T Consensus 166 deAI~Ra~aY~eAGAD~ifv~~~~--~~~~ei~~~~~~~--~~p~pv~~ 210 (290)
T TIGR02321 166 QEAVRRGQAYEEAGADAILIHSRQ--KTPDEILAFVKSW--PGKVPLVL 210 (290)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCC--CCHHHHHHHHHhc--CCCCCeEE
Confidence 999999999999887667887653 2355677776532 12357754
No 220
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=74.85 E-value=1.1e+02 Score=31.73 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa--N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
.+.+++..+.|.+.|.+-... +.+.-.+.++.+++.|..+...+-. ...++++..+++++++.+.|.....|-+..-
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G 178 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAG 178 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 444556667788877776652 2322223455555555443332221 2346677777888888877766567777776
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCCc-H---HHHHHHHHHHHHcCCc
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-V---LGALEIIEVVRASGLN 341 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~G-i---t~~l~i~~~A~~~gi~ 341 (412)
--......++.+.+++..++||...=+.. .......++++| +|++..-++-+| - ..+-.++...+..|+.
T Consensus 179 ~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaG-ad~vD~sv~glg~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 179 ILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAG-ADIIDTAISPFAGGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcC-CCEEEeeccccCCCcCCHhHHHHHHHHHhcCCC
Confidence 66666666666666666677775532211 223344555666 566544333332 1 2233344444444443
No 221
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=74.77 E-value=64 Score=32.28 Aligned_cols=96 Identities=22% Similarity=0.390 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCCCCceeecCCCC--CCHHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC--
Q 015161 247 EAVEVLEKLYEMGVTPVLFEQPVHR--DDWEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA-- 321 (412)
Q Consensus 247 ~A~~~~~~l~~~~l~~~~iEeP~~~--~d~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~-- 321 (412)
+..+.++.|-+.++....|--.--. ...+..+++++ ..+ +||.+|- +.+.+.++.+++.| +|++.+-+.
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~----~~~~~~viaGN-V~T~e~a~~L~~aG-ad~vkVGiGpG 181 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK----KFPDVPVIAGN-VVTYEGAKDLIDAG-ADAVKVGIGPG 181 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH----HSTTSEEEEEE-E-SHHHHHHHHHTT--SEEEESSSSS
T ss_pred HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH----hCCCceEEecc-cCCHHHHHHHHHcC-CCEEEEeccCC
Confidence 3455666666555542333321111 11223344443 444 8999884 78999999999998 799876532
Q ss_pred ---------CCc---HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 322 ---------KVG---VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 322 ---------~~G---it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
-+| +|...++++.|++++++++-.+-+
T Consensus 182 siCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi 220 (352)
T PF00478_consen 182 SICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGI 220 (352)
T ss_dssp TTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-
T ss_pred cccccccccccCCcHHHHHHHHHHHhhhccCceeecCCc
Confidence 113 566778999999999999886643
No 222
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.57 E-value=56 Score=31.03 Aligned_cols=97 Identities=11% Similarity=0.044 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCH
Q 015161 197 ASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDW 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~ 274 (412)
++.+.+.|...+.+-... +...-.+.++.+++.|..+.+-+ |+ ..++++...++++++.+.+....++=+-+-.-..
T Consensus 91 i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P 169 (263)
T cd07943 91 LKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMS-HMASPEELAEQAKLMESYGADCVYVTDSAGAMLP 169 (263)
T ss_pred HHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCH
Confidence 344556687777766542 22222334455555555444433 44 5677888888888888877654566666665556
Q ss_pred HHHHHhHHHhhcccCC-eEEe
Q 015161 275 EGLGHVSHIAKDKFGV-SVAA 294 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~i-pIa~ 294 (412)
+...++.+.++++.+. ||..
T Consensus 170 ~~v~~lv~~l~~~~~~~~l~~ 190 (263)
T cd07943 170 DDVRERVRALREALDPTPVGF 190 (263)
T ss_pred HHHHHHHHHHHHhCCCceEEE
Confidence 6666666555555554 6544
No 223
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=74.07 E-value=44 Score=33.00 Aligned_cols=54 Identities=9% Similarity=0.095 Sum_probs=45.8
Q ss_pred CCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 289 GVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 289 ~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
.+||++.- ...+.+.+.++++.| ++-+.+|.+..= +..++++.++|+++|+.+-
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~G-ftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVE 143 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSG-FSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVE 143 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcC-CCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 68998863 567899999999998 789999988863 6678999999999999874
No 224
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=74.00 E-value=60 Score=30.05 Aligned_cols=174 Identities=20% Similarity=0.258 Sum_probs=98.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP 268 (412)
+.++..+.++.+.+.|+..+-+-....-+.+.+.++.+++..++..+..- .....++....++.+.+.++. ++.=.
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~g~~--~i~i~ 87 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPNARLQAL--CRANEEDIERAVEAAKEAGID--IIRIF 87 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHSSEEEEE--EESCHHHHHHHHHHHHHTTSS--EEEEE
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhccccccee--eeehHHHHHHHHHhhHhccCC--EEEec
Confidence 56777788888888999998877544446788889998887544444322 224445444446666677765 55555
Q ss_pred CCCCC--------------HHHHHHhHHHhhcccCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEecCCCCc-H-
Q 015161 269 VHRDD--------------WEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG-V- 325 (412)
Q Consensus 269 ~~~~d--------------~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~d~v~ik~~~~G-i- 325 (412)
++..+ ++...+..+..+ ..+..+.. |.+-++++.+.++. +.+ +|.+.++=+- | .
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak-~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~l~Dt~-G~~~ 164 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAK-ELGYEVAFGCEDASRTDPEELLELAEALAEAG-ADIIYLADTV-GIMT 164 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHH-HTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT--SEEEEEETT-S-S-
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHH-hcCCceEeCccccccccHHHHHHHHHHHHHcC-CeEEEeeCcc-CCcC
Confidence 55555 455555444333 23444433 45566777665544 345 6776665433 5 3
Q ss_pred -HHHHHHHHHHH-HcC-CcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 326 -LGALEIIEVVR-ASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 326 -t~~l~i~~~A~-~~g-i~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
....+++...+ ..+ +++-+|+.... |++.+-.++|....+.++|
T Consensus 165 P~~v~~lv~~~~~~~~~~~l~~H~Hnd~--Gla~An~laA~~aGa~~id 211 (237)
T PF00682_consen 165 PEDVAELVRALREALPDIPLGFHAHNDL--GLAVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEBBTT--S-HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCc--cchhHHHHHHHHcCCCEEE
Confidence 34555544444 455 77777765333 4444545555444455554
No 225
>PLN02858 fructose-bisphosphate aldolase
Probab=73.69 E-value=67 Score=38.22 Aligned_cols=102 Identities=12% Similarity=0.092 Sum_probs=67.5
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCC-CCCCHHHHHHHHHcCCCC
Q 015161 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADE-SCRSLDDVKKIVKGNLAD 314 (412)
Q Consensus 239 aN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d 314 (412)
|-.-|+.+.+..+++..++.+- |..|.=--. .-..+ +........++..+||+..- +..+.+.+.++++.| ++
T Consensus 1118 afn~~n~e~~~avi~aAe~~~s-PvIl~~~~~~~~~~~~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~G-f~ 1194 (1378)
T PLN02858 1118 AFNVYNLEGIEAVVAAAEAEKS-PAILQVHPGALKQGGIP-LVSCCIAAAEQASVPITVHFDHGTSKHELLEALELG-FD 1194 (1378)
T ss_pred EEEeCCHHHHHHHHHHHHHhCC-CEEEECCccHHhhcCHH-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhC-CC
Confidence 3444577777777777776653 333321100 01122 22211122246789999874 566899999999987 79
Q ss_pred EEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 315 VINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 315 ~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
-+++|-+..- +..++++.++|+++|+.+-
T Consensus 1195 SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VE 1227 (1378)
T PLN02858 1195 SVMVDGSHLSFTENISYTKSISSLAHSKGLMVE 1227 (1378)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 9999998864 6679999999999999874
No 226
>PRK12999 pyruvate carboxylase; Reviewed
Probab=73.47 E-value=86 Score=36.58 Aligned_cols=151 Identities=10% Similarity=0.150 Sum_probs=94.9
Q ss_pred HHHHHH-HHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCC--cEE--E---EeCCCC-CCHHHHHHHHHHHHcCC
Q 015161 190 PAEAAE-LASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPD--SSF--I---LDANEG-YKPQEAVEVLEKLYEMG 259 (412)
Q Consensus 190 ~~~~~~-~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~--~~l--~---vDaN~~-~~~~~A~~~~~~l~~~~ 259 (412)
|+...+ .++...+.|...|.+-... +++.-...++++++++.. +.+ . .|+... |+++..+++++.+.++|
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~G 704 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAG 704 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 444444 3777788899998876552 333323346677776532 222 2 365553 89999999999999998
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCCc-HHH---HHHHH
Q 015161 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VLG---ALEII 332 (412)
Q Consensus 260 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~G-it~---~l~i~ 332 (412)
.....|-+..---......+|.+.+|++.++||...=+.. .......++++| +|++..-++-+| .+. +-.++
T Consensus 705 a~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aG-ad~vD~av~glg~~tgn~~le~vv 783 (1146)
T PRK12999 705 AHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAG-VDIVDVAVASMSGLTSQPSLNSIV 783 (1146)
T ss_pred CCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhC-CCEEEecchhhcCCcCCHHHHHHH
Confidence 8767888887776677777776667777889996643322 233445566666 787765555444 332 33444
Q ss_pred HHHHHcCCc
Q 015161 333 EVVRASGLN 341 (412)
Q Consensus 333 ~~A~~~gi~ 341 (412)
...+..|..
T Consensus 784 ~~L~~~~~~ 792 (1146)
T PRK12999 784 AALEGTERD 792 (1146)
T ss_pred HHHHhcCCC
Confidence 445544443
No 227
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=73.40 E-value=1e+02 Score=30.60 Aligned_cols=102 Identities=18% Similarity=0.247 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCCCCceeec
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 267 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l~~~~iEe 267 (412)
+.+...++..++.+.|-..+.+-+-. .++.+.+..|++.. ++.|..|.+--| .-|++..+. ++.+.++
T Consensus 34 Dv~aTv~QI~~L~~aG~dIVRvtv~~--~e~A~A~~~Ik~~~-~vPLVaDiHf~~--rla~~~~~~g~~k~RIN------ 102 (361)
T COG0821 34 DVEATVAQIKALERAGCDIVRVTVPD--MEAAEALKEIKQRL-NVPLVADIHFDY--RLALEAAECGVDKVRIN------ 102 (361)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEecCC--HHHHHHHHHHHHhC-CCCEEEEeeccH--HHHHHhhhcCcceEEEC------
Confidence 55667888899999999999999864 57888899998865 688999988664 444444444 5555444
Q ss_pred CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH
Q 015161 268 PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 302 (412)
|=.-..-+..+.+.+..+ +.++||-.|=+.-+++
T Consensus 103 PGNig~~~~v~~vVe~Ak-~~g~piRIGVN~GSLe 136 (361)
T COG0821 103 PGNIGFKDRVREVVEAAK-DKGIPIRIGVNAGSLE 136 (361)
T ss_pred CcccCcHHHHHHHHHHHH-HcCCCEEEecccCchh
Confidence 333333334555554433 5689998888877765
No 228
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=73.33 E-value=50 Score=29.64 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-HHHHHHhHHHhhcccC-CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-WEGLGHVSHIAKDKFG-VSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-~~~~~~l~~~~~~~~~-ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+++++.++++.+.+.|+. ++|=.+...+ .+.++++++ ..+ +.|.++ ++.+.+++..+++.| +|++..-
T Consensus 14 ~~~~~~~~~~~l~~~G~~--~vev~~~~~~~~~~i~~l~~----~~~~~~iGag-~v~~~~~~~~a~~~G-a~~i~~p-- 83 (190)
T cd00452 14 DAEDALALAEALIEGGIR--AIEITLRTPGALEAIRALRK----EFPEALIGAG-TVLTPEQADAAIAAG-AQFIVSP-- 83 (190)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCChhHHHHHHHHHH----HCCCCEEEEE-eCCCHHHHHHHHHcC-CCEEEcC--
Confidence 688999999999999986 9998877543 344555553 333 666655 567888999999888 4666421
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCc
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
|.. ..+.+.++.+|++++++.+.
T Consensus 84 --~~~--~~~~~~~~~~~~~~i~gv~t 106 (190)
T cd00452 84 --GLD--PEVVKAANRAGIPLLPGVAT 106 (190)
T ss_pred --CCC--HHHHHHHHHcCCcEECCcCC
Confidence 222 45678888999999998874
No 229
>PRK08185 hypothetical protein; Provisional
Probab=73.28 E-value=89 Score=30.27 Aligned_cols=119 Identities=13% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CCC--cEEE-E---------eCCC-CC-CHHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HPD--SSFI-L---------DANE-GY-KPQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~~--~~l~-v---------DaN~-~~-~~~~A~~~~~~l 255 (412)
+.+++..+.||+.+-+.-. -+.++.++.-+.+.+. +-. .+|- + +.+. .+ +++||.+|.+..
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~T 161 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRT 161 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhh
Confidence 3355567789999988866 3556667666666541 211 1110 1 1111 14 699999998874
Q ss_pred H-c-CCC-----CCceeecCC-CCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 256 Y-E-MGV-----TPVLFEQPV-HRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 256 ~-~-~~l-----~~~~iEeP~-~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
. + +-+ +-.| +..+ +.-+++.++++++ .+++|+.+ |=|-...++++++++.|.. =+|+.
T Consensus 162 gvD~LAvaiGt~HG~y-~~~~kp~L~~e~l~~I~~----~~~iPLVlHGgsg~~~e~~~~ai~~GI~-KiNi~ 228 (283)
T PRK08185 162 GVDTLAVAIGTAHGIY-PKDKKPELQMDLLKEINE----RVDIPLVLHGGSANPDAEIAESVQLGVG-KINIS 228 (283)
T ss_pred CCCEEEeccCcccCCc-CCCCCCCcCHHHHHHHHH----hhCCCEEEECCCCCCHHHHHHHHHCCCe-EEEeC
Confidence 1 2 111 1112 3322 3456888888875 56899865 5666678889999998843 34554
No 230
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=73.15 E-value=60 Score=30.40 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCEEeEecCCC---------------hhHHHHHHHHHHHhCCCcEEEE-eCCC-CCCHHHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVGKN---------------LKEDIEVLRAIRAVHPDSSFIL-DANE-GYKPQEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~---------------~~~D~~~v~avr~~~~~~~l~v-DaN~-~~~~~~A~~~~~~l~~ 257 (412)
+.++.+.+.|+..+.+-+..+ ++.-.+.++.+++.+-.+.+.+ |+.. ..++++..++++.+.+
T Consensus 78 ~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 78 KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEE 157 (265)
T ss_pred hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHH
Confidence 344555666777777665422 2222233444455555555555 4443 3788888888888888
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhcccC-CeEEe
Q 015161 258 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAA 294 (412)
Q Consensus 258 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~ 294 (412)
++....++-+-.-.-..+.+.++-+.+++..+ +|+..
T Consensus 158 ~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 158 AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 87653344333333334444444444444444 56644
No 231
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=72.76 E-value=41 Score=31.74 Aligned_cols=109 Identities=22% Similarity=0.351 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CCCH---HHHHHHHHHHHcCCCCCcee
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GYKP---QEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~------~~~~---~~A~~~~~~l~~~~l~~~~i 265 (412)
+.++++.+.|...+ =+|...-+|.+.++.+.+-+..+.+.+|+.. +|.. -...+++++++++++. ..|
T Consensus 86 e~~~~~l~~Ga~rv--vigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~-~ii 162 (241)
T PRK14114 86 DYAEKLRKLGYRRQ--IVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLE-EIV 162 (241)
T ss_pred HHHHHHHHCCCCEE--EECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCC-EEE
Confidence 44566777888754 4563233566677777443456888999843 4532 2356788888888753 233
Q ss_pred ecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 266 EQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 266 EeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
=--+. --|++.++++++ .+++||.+.=-+.+.+|+.++.+.
T Consensus 163 ~tdI~rdGt~~G~d~el~~~l~~----~~~~pviasGGv~s~~Dl~~l~~~ 209 (241)
T PRK14114 163 HTEIEKDGTLQEHDFSLTRKIAI----EAEVKVFAAGGISSENSLKTAQRV 209 (241)
T ss_pred EEeechhhcCCCcCHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHhc
Confidence 22222 246777888764 468999888889999999998875
No 232
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=72.73 E-value=35 Score=34.10 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
+.+++++.+..+.+.+.+|-.-=+.+- +++.-.+.|++..+. +..+++....+ ++++. ...++ |
T Consensus 9 ~~~~~~~~~lL~~A~~~~yAVgAfNv~-n~e~~~Avi~AAEe~--~sPvIlq~s~~-----~~~~~---~g~~~-----~ 72 (357)
T TIGR01520 9 VITGDDVHKLFQYAKENNFAIPAINCT-SSSTINAALEAAADV--KSPIIIQFSNG-----GAAFI---AGKGV-----K 72 (357)
T ss_pred ccCHHHHHHHHHHHHHCCceEEEEEeC-CHHHHHHHHHHHHHh--CCCEEEEcCcc-----hhhhc---CCccc-----c
Confidence 457788888888888888866666553 233333333333333 23345444321 11111 00001 1
Q ss_pred cCCCCCC-H---HHHHHhHHHhhcccCCeEEeCC-CCCCH--HHHHHHHHcC----------CCCEEEecCCCCc----H
Q 015161 267 QPVHRDD-W---EGLGHVSHIAKDKFGVSVAADE-SCRSL--DDVKKIVKGN----------LADVINIKLAKVG----V 325 (412)
Q Consensus 267 eP~~~~d-~---~~~~~l~~~~~~~~~ipIa~dE-s~~~~--~~~~~~i~~~----------a~d~v~ik~~~~G----i 325 (412)
.=+|..+ . ..+..+.+.+.++.++||++.- ...+. +.+.++++.+ .++-+++|-+..= +
T Consensus 73 ~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI 152 (357)
T TIGR01520 73 DEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENI 152 (357)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHH
Confidence 1011000 0 0022222222346789999874 44566 5578888876 3899999988863 6
Q ss_pred HHHHHHHHHHHHcCCcEE
Q 015161 326 LGALEIIEVVRASGLNLM 343 (412)
Q Consensus 326 t~~l~i~~~A~~~gi~~~ 343 (412)
..++++.++|+++|+.+-
T Consensus 153 ~~TrevVe~Ah~~GvsVE 170 (357)
T TIGR01520 153 EICVKYLKRMAKIKMWLE 170 (357)
T ss_pred HHHHHHHHHHHHcCCEEE
Confidence 678999999999999874
No 233
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=72.28 E-value=83 Score=30.37 Aligned_cols=113 Identities=18% Similarity=0.306 Sum_probs=71.2
Q ss_pred HHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----eC----CCCCC-HHHHHHHHHHHHc--
Q 015161 197 ASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----DA----NEGYK-PQEAVEVLEKLYE-- 257 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----Da----N~~~~-~~~A~~~~~~l~~-- 257 (412)
+.+..+.||+.+=+... .++++.++..+.+.+. += +.+|- + |. ...|| +++|.+|+++..-
T Consensus 85 i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~ 164 (276)
T cd00947 85 IKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDA 164 (276)
T ss_pred HHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCE
Confidence 44556789999999876 4567777766555542 21 11110 1 11 12354 9999999998641
Q ss_pred --------CCCCCceee-cCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 --------MGVTPVLFE-QPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 --------~~l~~~~iE-eP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.|. |-. +| .-|++-++++++ .+++|+.+ |=|=...++++++++.|.. =+|+.
T Consensus 165 LAvsiGt~HG~---Y~~~~p--~L~~~~L~~i~~----~~~vPLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~ 226 (276)
T cd00947 165 LAVAIGTSHGA---YKGGEP--KLDFDRLKEIAE----RVNVPLVLHGGSGIPDEQIRKAIKLGVC-KININ 226 (276)
T ss_pred EEeccCccccc---cCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCCHHHHHHHHHcCCe-EEEeC
Confidence 232 333 33 457888888875 46899877 5676777889999988743 33443
No 234
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=72.23 E-value=50 Score=32.00 Aligned_cols=93 Identities=16% Similarity=0.284 Sum_probs=62.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec---------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ---------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe---------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
.++.++-+++++.|.+.|+. .||= |-..+.++.++++.+ ..++.+.. .+.+..++.++++.+
T Consensus 22 ~~s~e~k~~ia~~L~~~Gv~--~IEvgsf~~p~~~p~~~d~~e~~~~l~~----~~~~~~~~--l~~~~~~ie~A~~~g- 92 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLS--YIEVASFVSPKWVPQMADAAEVMAGIQR----RPGVTYAA--LTPNLKGLEAALAAG- 92 (287)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCcCcccccccccHHHHHHhhhc----cCCCeEEE--EecCHHHHHHHHHcC-
Confidence 57889999999999999985 8995 333344555665542 22344432 235889999999876
Q ss_pred CCEEEecCC--------CCc--H----HHHHHHHHHHHHcCCcEE
Q 015161 313 ADVINIKLA--------KVG--V----LGALEIIEVVRASGLNLM 343 (412)
Q Consensus 313 ~d~v~ik~~--------~~G--i----t~~l~i~~~A~~~gi~~~ 343 (412)
+|.+.+=.. +.| . ....+++++|+++|+.+.
T Consensus 93 ~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~ 137 (287)
T PRK05692 93 ADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVR 137 (287)
T ss_pred CCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 566554321 122 2 235679999999999874
No 235
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=71.74 E-value=1e+02 Score=32.50 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=63.6
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEE-eCCCCCCHHHHHHHHHHHHcCCCCCcee------
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFIL-DANEGYKPQEAVEVLEKLYEMGVTPVLF------ 265 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~v-DaN~~~~~~~A~~~~~~l~~~~l~~~~i------ 265 (412)
.+.++.+.+.|...+=+.... .-..-++.++.+|+.+|+..+++ |. -|.++|.... +.|.. .|
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~----~aGaD--~i~vg~g~ 320 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNV---VTMYQAQNLI----QAGVD--GLRVGMGS 320 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecC---CCHHHHHHHH----HcCcC--EEEECCCC
Confidence 455666666676666666542 11233455666666666665553 32 2345543333 24432 22
Q ss_pred -----e-c------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 -----E-Q------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 -----E-e------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
- + |. ...+..++++.+ ..++||.+|--+.+..|+.+++..|+ +.+++
T Consensus 321 G~~~~t~~~~~~g~~~-~~~i~~~~~~~~----~~~vpVIadGGI~~~~di~kAla~GA-~~V~v 379 (505)
T PLN02274 321 GSICTTQEVCAVGRGQ-ATAVYKVASIAA----QHGVPVIADGGISNSGHIVKALTLGA-STVMM 379 (505)
T ss_pred CccccCccccccCCCc-ccHHHHHHHHHH----hcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 1 0 11 113344555543 56899999999999999999999985 56654
No 236
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=71.48 E-value=29 Score=33.04 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeEecCCChhHHHHHHHHHHHhC-C---CcEE--EEeCC-CCC-----C---HHHHHHHH
Q 015161 189 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-P---DSSF--ILDAN-EGY-----K---PQEAVEVL 252 (412)
Q Consensus 189 ~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~---~~~l--~vDaN-~~~-----~---~~~A~~~~ 252 (412)
++++..+.+.+..+ .|-..+|+-=| .+-.++|+++++++ | .+.| +-|.+ ++| + .+++++.+
T Consensus 88 ~~~~av~~a~r~~~~aGa~aVkiEd~---~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra 164 (254)
T cd06557 88 SPEQALRNAARLMKEAGADAVKLEGG---AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDA 164 (254)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHH
Confidence 58887777666665 99999999765 45678888888865 2 1111 11211 222 2 46788899
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEE
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 293 (412)
+.+++.|....++|-+ + . +..+++++ +.++|+.
T Consensus 165 ~a~~~AGA~~i~lE~v-~-~--~~~~~i~~----~v~iP~i 197 (254)
T cd06557 165 LALEEAGAFALVLECV-P-A--ELAKEITE----ALSIPTI 197 (254)
T ss_pred HHHHHCCCCEEEEcCC-C-H--HHHHHHHH----hCCCCEE
Confidence 9999998765677776 3 2 45677775 5678875
No 237
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=71.18 E-value=6.5 Score=36.70 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CC-CcEEEEeCCCC-------CCH---HHHHHHHHHHHcCCCCC
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HP-DSSFILDANEG-------YKP---QEAVEVLEKLYEMGVTP 262 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~-~~~l~vDaN~~-------~~~---~~A~~~~~~l~~~~l~~ 262 (412)
+.++++.+.|.. |+=+|...-+|.+.++.+.+. ++ .+-+.+|+..+ |.. -+..++++++.++++.
T Consensus 86 ed~~~ll~~Ga~--~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~- 162 (229)
T PF00977_consen 86 EDAERLLDAGAD--RVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAG- 162 (229)
T ss_dssp HHHHHHHHTT-S--EEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-S-
T ss_pred HHHHHHHHhCCC--EEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCc-
Confidence 445667788876 556663334566778787777 44 57888998765 432 2456677778777654
Q ss_pred ceeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 263 VLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 263 ~~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
.+|=--+.. -|++.++++++ ..++|+.+.=-+.+.+|+.++.+.|. +.+
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~----~~~~~viasGGv~~~~Dl~~l~~~G~-~gv 217 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAE----AVNIPVIASGGVRSLEDLRELKKAGI-DGV 217 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHH----HHSSEEEEESS--SHHHHHHHHHTTE-CEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHH----HcCCCEEEecCCCCHHHHHHHHHCCC-cEE
Confidence 343333332 35777777764 56899988888999999999998775 544
No 238
>PLN02321 2-isopropylmalate synthase
Probab=71.12 E-value=36 Score=36.81 Aligned_cols=109 Identities=17% Similarity=0.233 Sum_probs=67.2
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeec--C-CCCCCHHHHHHhHHHhhccc----CCeEEeCCCCCCHHHHHH
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--P-VHRDDWEGLGHVSHIAKDKF----GVSVAADESCRSLDDVKK 306 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEe--P-~~~~d~~~~~~l~~~~~~~~----~ipIa~dEs~~~~~~~~~ 306 (412)
|.+| .++.+|-+++++.|.+.|+. .||= | .++.|++.++++.+.+.... -+|....=+-.+..++.+
T Consensus 96 DGeQ~~g~~~s~eeKl~Ia~~L~~lGVd--~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~ 173 (632)
T PLN02321 96 DGEQSPGATLTSKEKLDIARQLAKLGVD--IIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDA 173 (632)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHH
Confidence 5565 46899999999999999985 9994 5 44678888888764211100 013333333446778888
Q ss_pred HHHcC--C----CCEEE----------ecCCCCc-HHHHHHHHHHHHHcCC-cEEEccCc
Q 015161 307 IVKGN--L----ADVIN----------IKLAKVG-VLGALEIIEVVRASGL-NLMIGGMV 348 (412)
Q Consensus 307 ~i~~~--a----~d~v~----------ik~~~~G-it~~l~i~~~A~~~gi-~~~~~~~~ 348 (412)
.++.. + +.++. ++.++-- +..+.+++++|+++|. .+..++..
T Consensus 174 A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~ED 233 (632)
T PLN02321 174 AWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPED 233 (632)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEeccc
Confidence 88752 1 22221 1111111 2346678999999988 47777753
No 239
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=70.54 E-value=1e+02 Score=29.53 Aligned_cols=101 Identities=10% Similarity=0.074 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeC--CCCCCHHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDA--NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDa--N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
.+..+...+.|...+.+-... +++.-.+.++.+++.|-.+.+.++. ...++++...++++++.+++.....+=+.+-
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G 173 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAG 173 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 334445556677777665442 3333334455555555444444432 2457778878888888877765456667766
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEe
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
.-..+...++.+.++++.++||..
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~l~~ 197 (275)
T cd07937 174 LLTPYAAYELVKALKKEVGLPIHL 197 (275)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEE
Confidence 666666666655555555666654
No 240
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=70.19 E-value=1.6e+02 Score=31.64 Aligned_cols=151 Identities=13% Similarity=0.183 Sum_probs=84.8
Q ss_pred HHHH-HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEE--EeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 190 PAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFI--LDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 190 ~~~~-~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~--vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
|+++ ...++...+.|...|.+-.. .+.+.-...++.+++.|..+... ...+-.++.+..+++++++.+.|.....|
T Consensus 89 pddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i 168 (582)
T TIGR01108 89 ADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI 168 (582)
T ss_pred chhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3443 44556667788888777655 23333333455666666544433 22333467788888888888887665566
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCCc-HH---HHHHHHHHHHHc
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRAS 338 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~G-it---~~l~i~~~A~~~ 338 (412)
-+-.---......++.+.+++..++||...=+.. .......++++| +|++..-++-+| -+ .+-.++...+..
T Consensus 169 ~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaG-a~~vd~ai~GlG~~tGn~~le~vv~~L~~~ 247 (582)
T TIGR01108 169 KDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAG-ADGIDTAISSMSGGTSHPPTETMVAALRGT 247 (582)
T ss_pred CCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC-CCEEEeccccccccccChhHHHHHHHHHhc
Confidence 6766655555566665556666677875532221 233345566666 677655544444 22 233444444444
Q ss_pred CCc
Q 015161 339 GLN 341 (412)
Q Consensus 339 gi~ 341 (412)
|+.
T Consensus 248 g~~ 250 (582)
T TIGR01108 248 GYD 250 (582)
T ss_pred CCC
Confidence 444
No 241
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=70.14 E-value=1.5e+02 Score=31.89 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~----~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
.+.+...+++.++.+.|...+.+-+-. .++.+.++.|++. |.++.|..|-+-.+.. |+.-++.+++..++|-
T Consensus 38 ~D~~atv~Qi~~l~~aGceiVRvtv~~--~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~--A~~a~~~v~kiRINPG 113 (611)
T PRK02048 38 MDTEACVAQAKRIIDAGGEYVRLTTQG--VREAENLMNINIGLRSQGYMVPLVADVHFNPKV--ADVAAQYAEKVRINPG 113 (611)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHH--HHHHHHhhCCEEECCC
Confidence 355677899999999999999998853 5677777777663 5679999999987764 3444444544333321
Q ss_pred eeecC---C-----CCCCH--------HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HH
Q 015161 264 LFEQP---V-----HRDDW--------EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 326 (412)
Q Consensus 264 ~iEeP---~-----~~~d~--------~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it 326 (412)
=|=.+ + ..+++ +.+..+.+..+ ..++||=.|=+.-++. .++++... | +--| +.
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak-~~~~~iRIGvN~GSL~--~~i~~~yg-~------tpe~mVe 183 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICK-ENHTAIRIGVNHGSLS--DRIMSRYG-D------TPEGMVE 183 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-C------ChHHHHH
Confidence 11111 0 01111 11222322222 4578888887777665 23333211 1 1125 44
Q ss_pred HHHHHHHHHHHcCCc
Q 015161 327 GALEIIEVVRASGLN 341 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~ 341 (412)
.+++-+++|+++|..
T Consensus 184 SAle~~~i~e~~~f~ 198 (611)
T PRK02048 184 SCMEFLRICVEEHFT 198 (611)
T ss_pred HHHHHHHHHHHCCCC
Confidence 566666666666544
No 242
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=70.10 E-value=37 Score=36.87 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+..++-+.+|++.|-. .+==-++. .+.+.++++++.++ ..+.+|+.+|=. +++.-+..+++. +|-+.+.|.
T Consensus 108 D~eatv~Qi~~l~~aGce--iVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~Al~a~~~--vdkiRINPG 182 (733)
T PLN02925 108 DVEATVDQVMRIADKGAD--IVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIH-FAPSVALRVAEC--FDKIRVNPG 182 (733)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecC-CCHHHHHHHHHh--cCCeEECCc
Confidence 345556666666666653 33333332 23455566654333 257899999965 555555555554 899999999
Q ss_pred CCc-H----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015161 322 KVG-V----------------------LGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 322 ~~G-i----------------------t~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+| - .....++..|+++|+++-+|.-
T Consensus 183 N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN 231 (733)
T PLN02925 183 NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN 231 (733)
T ss_pred ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 988 4 2344599999999999988654
No 243
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.99 E-value=1.3e+02 Score=30.64 Aligned_cols=128 Identities=17% Similarity=0.267 Sum_probs=80.9
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
+.+.+.++. +++ ..++++.+.+.|...+=+.... +.+.-.+.++.+|+.+|+..+++ ..--|.++|....+
T Consensus 142 l~v~aavg~-~~~-~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~--g~V~T~e~a~~l~~---- 213 (404)
T PRK06843 142 LRVGAAVSI-DID-TIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIA--GNIVTKEAALDLIS---- 213 (404)
T ss_pred eEEEEEEeC-CHH-HHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEE--EecCCHHHHHHHHH----
Confidence 334444433 233 4577788888999999888763 33455677899999899887765 12234566544433
Q ss_pred CCCCCceee---cC-----------CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 258 MGVTPVLFE---QP-----------VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 258 ~~l~~~~iE---eP-----------~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+.. +|= .| +...++..+..+.+.+ +..++||.+|--+.+..|+.+++..|+ |.+++
T Consensus 214 aGaD--~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~-~~~~vpVIAdGGI~~~~Di~KALalGA-~aVmv 284 (404)
T PRK06843 214 VGAD--CLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVC-KNTNICIIADGGIRFSGDVVKAIAAGA-DSVMI 284 (404)
T ss_pred cCCC--EEEECCCCCcCCcceeecCCCCChHHHHHHHHHHH-hhcCCeEEEeCCCCCHHHHHHHHHcCC-CEEEE
Confidence 3432 221 11 1122455554444322 256899999999999999999999984 66654
No 244
>PRK08508 biotin synthase; Provisional
Probab=69.68 E-value=74 Score=30.57 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHcCCcEEEc
Q 015161 325 VLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~ 345 (412)
..+-++.++.|++.|+++..+
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg 156 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSG 156 (279)
T ss_pred HHHHHHHHHHHHHcCCeecce
Confidence 567777888889999887443
No 245
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=69.49 E-value=2.2e+02 Score=33.33 Aligned_cols=151 Identities=9% Similarity=0.105 Sum_probs=95.8
Q ss_pred HHHH-HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCC--cEE--E---EeCCC-CCCHHHHHHHHHHHHcCC
Q 015161 190 PAEA-AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD--SSF--I---LDANE-GYKPQEAVEVLEKLYEMG 259 (412)
Q Consensus 190 ~~~~-~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~--~~l--~---vDaN~-~~~~~~A~~~~~~l~~~~ 259 (412)
|+++ ...++...+.|...|.+-=. .+++.-...++++++.|.. ..| . +|.+. .|+.+..+++++.+.+.|
T Consensus 623 pd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G 702 (1143)
T TIGR01235 623 PDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG 702 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC
Confidence 4554 44566778899999998544 3444444557777777642 233 2 45554 688999999999999998
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCCc-HH---HHHHHH
Q 015161 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEII 332 (412)
Q Consensus 260 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~G-it---~~l~i~ 332 (412)
.....|-+..---......+|.+.++++.++||...=+.+ .......++++| +|++..-++-+| .+ .+..+.
T Consensus 703 ad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaG-ad~vD~ai~gl~G~ts~p~~e~~v 781 (1143)
T TIGR01235 703 AHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAG-VDVVDVAVDSMSGLTSQPSLGAIV 781 (1143)
T ss_pred CCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhC-CCEEEecchhhcCCCCCHhHHHHH
Confidence 8767888887766666777777667777789997643322 233455566766 787644443332 22 233444
Q ss_pred HHHHHcCCc
Q 015161 333 EVVRASGLN 341 (412)
Q Consensus 333 ~~A~~~gi~ 341 (412)
...+..|..
T Consensus 782 ~~L~~~~~~ 790 (1143)
T TIGR01235 782 AALEGSERD 790 (1143)
T ss_pred HHHHhCCCC
Confidence 444444433
No 246
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=69.38 E-value=15 Score=35.63 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=45.5
Q ss_pred cccCCeEEeC-CCCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAAD-ESCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~d-Es~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||+.. ....+++.++++++.| ++-+.+|.+..- +..++++.++|+++|+.+-
T Consensus 70 ~~~~vPValHLDH~~~~e~i~~ai~~G-ftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VE 131 (287)
T PF01116_consen 70 EEASVPVALHLDHGKDFEDIKRAIDAG-FTSVMIDGSALPFEENIAITREVVEYAHAYGVSVE 131 (287)
T ss_dssp HHSTSEEEEEEEEE-SHHHHHHHHHHT-SSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEE
T ss_pred HHcCCCEEeecccCCCHHHHHHHHHhC-cccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEE
Confidence 4678999886 4677899999999997 799999998864 6679999999999998874
No 247
>PRK15108 biotin synthase; Provisional
Probab=69.32 E-value=75 Score=31.64 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHcCCCCCcee----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++|.++.++...+.|+.=.-+ +.|.. .+++.+.++.+.++ +.++.++.-=...+.+.++++.++| +|.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~-~~~e~i~~~i~~ik-~~~i~v~~s~G~ls~e~l~~LkeAG-ld~~n~ 152 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHE-RDMPYLEQMVQGVK-AMGLETCMTLGTLSESQAQRLANAG-LDYYNH 152 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCc-chHHHHHHHHHHHH-hCCCEEEEeCCcCCHHHHHHHHHcC-CCEEee
Confidence 35566656555555443321111 23321 22344444433333 2344444322234455566665555 555444
Q ss_pred c----------CCCCc-HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 319 K----------LAKVG-VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 319 k----------~~~~G-it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+ +...+ ..+.++.+..|++.|+.+..|.++
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~ 193 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIV 193 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEE
Confidence 2 21123 678999999999999988766443
No 248
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.25 E-value=1.2e+02 Score=31.95 Aligned_cols=148 Identities=11% Similarity=0.174 Sum_probs=92.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCC
Q 015161 193 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 269 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~--~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~ 269 (412)
+...++...+.|...|.+-.. .+++.-...++++++++..+ .|..-.....+++..+++++++.+.|.....|-+-.
T Consensus 99 v~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDta 178 (499)
T PRK12330 99 VDRFVEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMA 178 (499)
T ss_pred HHHHHHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 345666777889999887765 34433334567777776433 332223456789999999999999988766888887
Q ss_pred CCCCHHHHHHhHHHhhccc--CCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCCc-HH---HHHHHHHHHHHcCC
Q 015161 270 HRDDWEGLGHVSHIAKDKF--GVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKVG-VL---GALEIIEVVRASGL 340 (412)
Q Consensus 270 ~~~d~~~~~~l~~~~~~~~--~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~G-it---~~l~i~~~A~~~gi 340 (412)
---......+|.+.+++.. ++||...=+.+ .......++++| +|++..-++-+| -+ .+-.++...+..|+
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAG-ad~vDtai~Glg~~aGn~atE~vv~~L~~~g~ 257 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAG-VDVVDTAISSMSLGPGHNPTESLVEMLEGTGY 257 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcC-CCEEEeecccccccccchhHHHHHHHHHhcCC
Confidence 7767777777766666666 58886643322 233445566776 677544433333 22 23344555555544
Q ss_pred c
Q 015161 341 N 341 (412)
Q Consensus 341 ~ 341 (412)
.
T Consensus 258 ~ 258 (499)
T PRK12330 258 T 258 (499)
T ss_pred C
Confidence 3
No 249
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=68.95 E-value=1.5e+02 Score=30.92 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec---CC
Q 015161 194 AELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---PV 269 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe---P~ 269 (412)
.+.++.+.+.|...+-+..- .....-++.++.+++.+|++.+.+ ....|.++|....+ .|.. +|-= |-
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~----aGad--~i~vg~g~g 301 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIE----AGAD--AVKVGIGPG 301 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHH----cCCC--EEEECCCCC
Confidence 56677777888888876653 223344566777777777777776 44556777655443 4543 4410 10
Q ss_pred -----------CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 270 -----------HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 270 -----------~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
..-+++.+.++++.. .+.++||.+|--+.+..|+.+++..| +|.+.+
T Consensus 302 s~~~~r~~~~~g~p~~~~~~~~~~~~-~~~~~~viadGGi~~~~di~kAla~G-A~~v~~ 359 (486)
T PRK05567 302 SICTTRIVAGVGVPQITAIADAAEAA-KKYGIPVIADGGIRYSGDIAKALAAG-ASAVML 359 (486)
T ss_pred ccccceeecCCCcCHHHHHHHHHHHh-ccCCCeEEEcCCCCCHHHHHHHHHhC-CCEEEE
Confidence 012455666665432 24579999999999999999999988 466654
No 250
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=68.79 E-value=90 Score=28.15 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=74.3
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+ +.|.+.+|+-..-....-.+.++.+|+.+++..+.+|..-. ++... .++.+.+.|.. +
T Consensus 6 lD~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~~--~~~~~~~~Gad--~ 79 (206)
T TIGR03128 6 LDLLDIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGEY--EAEQAFAAGAD--I 79 (206)
T ss_pred ecCCCHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchHH--HHHHHHHcCCC--E
Confidence 3455788888888877 77888776631112233467788999887777788886422 33321 24556667753 6
Q ss_pred e----ecCCCCCCHHHHHHhHHHhhcccCCeEEeCC-CCCC-HHHHHHHHHcCCCCEEEecCC
Q 015161 265 F----EQPVHRDDWEGLGHVSHIAKDKFGVSVAADE-SCRS-LDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 265 i----EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE-s~~~-~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+ |-|. .......+..+ +.++++..+- +..+ .++++.+.+. .+|++.+.+.
T Consensus 80 i~vh~~~~~--~~~~~~i~~~~----~~g~~~~~~~~~~~t~~~~~~~~~~~-g~d~v~~~pg 135 (206)
T TIGR03128 80 VTVLGVADD--ATIKGAVKAAK----KHGKEVQVDLINVKDKVKRAKELKEL-GADYIGVHTG 135 (206)
T ss_pred EEEeccCCH--HHHHHHHHHHH----HcCCEEEEEecCCCChHHHHHHHHHc-CCCEEEEcCC
Confidence 6 6431 12222333322 4689998763 4444 4667777665 4799987764
No 251
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=68.68 E-value=55 Score=31.15 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=75.4
Q ss_pred CcEEEEeCCC-----CC-C-HHHHHHHHHHHHcCCCCC--ceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH
Q 015161 232 DSSFILDANE-----GY-K-PQEAVEVLEKLYEMGVTP--VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302 (412)
Q Consensus 232 ~~~l~vDaN~-----~~-~-~~~A~~~~~~l~~~~l~~--~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 302 (412)
++.+..+.+. +| + ..+..++++..++.|..- ..-|+-.-..+++.++.+++ .+++||..-.-+..+.
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~----~v~iPvl~kdfi~~~~ 124 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARA----AVSLPVLRKDFIIDPY 124 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHH----hcCCCEEeeeecCCHH
Confidence 3566666654 23 1 223456777777765321 13344444566777887764 5789998877778888
Q ss_pred HHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015161 303 DVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 303 ~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~ 346 (412)
++..+...| +|++.+..+-.......++++.|+..|+.+++-.
T Consensus 125 qi~~a~~~G-AD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 125 QIYEARAAG-ADAILLIVAALDDEQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred HHHHHHHcC-CCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 888888887 6999888766555567889999999999987543
No 252
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=68.34 E-value=76 Score=31.52 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=47.8
Q ss_pred cccCCeEEeCC-CCC--CHHHHHHHHHcCC----------CCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCR--SLDDVKKIVKGNL----------ADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~--~~~~~~~~i~~~a----------~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||++.- .+. +++.+.++++.|. ++-+.+|.+..- +..++++.++|++.|+.+-
T Consensus 82 ~~~~VPV~lHLDH~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VE 156 (340)
T cd00453 82 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLE 156 (340)
T ss_pred HHCCCCEEEEcCCCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46789999864 455 7889999999984 889999988864 5568999999999999874
No 253
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=68.01 E-value=1.3e+02 Score=29.68 Aligned_cols=138 Identities=23% Similarity=0.300 Sum_probs=76.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCC----CCCHHHHHHHHHHHHcCCCCCcee----e--cCCCCCCHHHHHHhHHHhhcccCC
Q 015161 221 EVLRAIRAVHPDSSFILDANE----GYKPQEAVEVLEKLYEMGVTPVLF----E--QPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 221 ~~v~avr~~~~~~~l~vDaN~----~~~~~~A~~~~~~l~~~~l~~~~i----E--eP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
+-++.+|+..++..+.+-.+. .|+.+++.+..+.++...+.+ -+ | +|-...|++.+.+.-+.+++..++
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel-~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~v 179 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAI-HLNPLQEAVQPEGDRDFRGWLERIEELVKALSV 179 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEE-eCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCC
Confidence 566777777666665544332 668888777777665332210 11 2 344445665332222223456789
Q ss_pred eEEeCCC--CCCHHHHHHHHHcCCCCEEEecCC-------------------------CCcHHHHHHHHHHHHHc-CCcE
Q 015161 291 SVAADES--CRSLDDVKKIVKGNLADVINIKLA-------------------------KVGVLGALEIIEVVRAS-GLNL 342 (412)
Q Consensus 291 pIa~dEs--~~~~~~~~~~i~~~a~d~v~ik~~-------------------------~~Git~~l~i~~~A~~~-gi~~ 342 (412)
||..=++ ..+.++++.+.+.| +|++.+.-. ..|+.....+....+.. ++++
T Consensus 180 PVivK~~g~g~s~~~a~~l~~~G-vd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipI 258 (326)
T cd02811 180 PVIVKEVGFGISRETAKRLADAG-VKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPL 258 (326)
T ss_pred CEEEEecCCCCCHHHHHHHHHcC-CCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcE
Confidence 9998654 24577788777776 788775321 01322222333334444 7898
Q ss_pred EEccCcchHHHHHHHHHH
Q 015161 343 MIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 343 ~~~~~~es~i~~~a~~hl 360 (412)
+..+-+.++.-..-++.+
T Consensus 259 iasGGIr~~~dv~kal~l 276 (326)
T cd02811 259 IASGGIRNGLDIAKALAL 276 (326)
T ss_pred EEECCCCCHHHHHHHHHh
Confidence 887766666544444443
No 254
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=67.75 E-value=78 Score=29.50 Aligned_cols=111 Identities=21% Similarity=0.232 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCC--------CCHHHHHHHHHHHHcCCCCCce
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEG--------YKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~--------~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+.++++...|.. |+=+|...-.| +.++.+-+.++ .+-+.+|+..+ .++.+.++.+... --.+ .+
T Consensus 91 edv~~~l~~Ga~--~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l--i~ 164 (233)
T cd04723 91 ENAQEWLKRGAS--RVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEEL--IV 164 (233)
T ss_pred HHHHHHHHcCCC--eEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeE--EE
Confidence 445667777854 34456433456 77777777654 57889998655 3466655555444 1111 11
Q ss_pred ee----cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 265 FE----QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 265 iE----eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
.- --....|++.++++.+ .+.+||..+=-+.+.+|+.++++.|+ +.+
T Consensus 165 ~di~~~G~~~g~~~~~~~~i~~----~~~ipvi~~GGi~s~edi~~l~~~G~-~~v 215 (233)
T cd04723 165 LDIDRVGSGQGPDLELLERLAA----RADIPVIAAGGVRSVEDLELLKKLGA-SGA 215 (233)
T ss_pred EEcCccccCCCcCHHHHHHHHH----hcCCCEEEeCCCCCHHHHHHHHHcCC-CEE
Confidence 11 1112345677777764 56899999889999999999999874 444
No 255
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=67.52 E-value=1.2e+02 Score=29.30 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=78.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEe-------cC-------CChhHHHHHHHHHHHhC--CCcEE--EEeCCCCCCHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLK-------VG-------KNLKEDIEVLRAIRAVH--PDSSF--ILDANEGYKPQE 247 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiK-------vG-------~~~~~D~~~v~avr~~~--~~~~l--~vDaN~~~~~~~ 247 (412)
+..++....+-++++.+.|--.+-|. +| .++++-+++|++++++- +++.| +.|+-..=..++
T Consensus 88 GfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~ 167 (289)
T COG2513 88 GFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDD 167 (289)
T ss_pred CCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHH
Confidence 44567788888888889998877652 33 25677888999999974 45444 355543333899
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC--CeEEeCCCCCC-HHHHHHHHHcCCCCEE
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--VSVAADESCRS-LDDVKKIVKGNLADVI 316 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--ipIa~dEs~~~-~~~~~~~i~~~a~d~v 316 (412)
|++.++...+.|-...|.|-.-+ .+.++++++ +.. +|+-.-|.-.+ ..+..++-+.| +..+
T Consensus 168 AI~Ra~AY~eAGAD~if~~al~~---~e~i~~f~~----av~~pl~~N~t~~g~tp~~~~~~L~~~G-v~~V 231 (289)
T COG2513 168 AIERAQAYVEAGADAIFPEALTD---LEEIRAFAE----AVPVPLPANITEFGKTPLLTVAELAELG-VKRV 231 (289)
T ss_pred HHHHHHHHHHcCCcEEccccCCC---HHHHHHHHH----hcCCCeeeEeeccCCCCCcCHHHHHhcC-ceEE
Confidence 99999999998866557665443 666777775 344 44444343222 12344444555 4444
No 256
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=67.43 E-value=47 Score=33.18 Aligned_cols=58 Identities=19% Similarity=0.316 Sum_probs=44.5
Q ss_pred cccCCeEEeCC-CCCC--HHHHHHHHHcC----------CCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRS--LDDVKKIVKGN----------LADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~--~~~~~~~i~~~----------a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||++.- ...+ .+.++++++.| .++-+.+|-+..- +..++++.++|+.+|+.+-
T Consensus 89 ~~~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVE 163 (350)
T PRK09197 89 EHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLE 163 (350)
T ss_pred HHCCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 36789999864 4556 66677777765 2788999988864 6678999999999999884
No 257
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=67.22 E-value=1.3e+02 Score=29.58 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=43.9
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEecC-------CC----Cc---HHHHHHHHHHHHHcCCcEEEccCcchHHHHH
Q 015161 290 VSVAADESCRSLDDVKKIVKGNLADVINIKL-------AK----VG---VLGALEIIEVVRASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 290 ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~-------~~----~G---it~~l~i~~~A~~~gi~~~~~~~~es~i~~~ 355 (412)
+||..+ ++.+.++.+.+++.| +|++.+-. ++ +| ++...++.+.+++++++++..+-+.++-...
T Consensus 136 v~Vi~G-~v~t~~~A~~l~~aG-aD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~ 213 (325)
T cd00381 136 VDVIAG-NVVTAEAARDLIDAG-ADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIV 213 (325)
T ss_pred ceEEEC-CCCCHHHHHHHHhcC-CCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHH
Confidence 788774 458888899998877 68876521 11 22 3344567777778899999866554443344
Q ss_pred HHHHH
Q 015161 356 FAGHL 360 (412)
Q Consensus 356 a~~hl 360 (412)
.++.+
T Consensus 214 kAla~ 218 (325)
T cd00381 214 KALAA 218 (325)
T ss_pred HHHHc
Confidence 44433
No 258
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=67.19 E-value=39 Score=35.47 Aligned_cols=107 Identities=12% Similarity=0.109 Sum_probs=67.0
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. +||=-++ +.|++..+++.+. ..+..|++ =.-....++.+.++.
T Consensus 11 DG~Q~~g~~~s~e~K~~ia~~L~~~GV~--~IEvG~p~~s~~d~e~v~~i~~~---~~~~~i~a-l~r~~~~did~a~~a 84 (494)
T TIGR00973 11 DGEQSPGASLTVEEKLQIALALERLGVD--IIEAGFPVSSPGDFEAVQRIART---VKNPRVCG-LARCVEKDIDAAAEA 84 (494)
T ss_pred ccCcCCCCCcCHHHHHHHHHHHHHcCCC--EEEEECCCCCHHHHHHHHHHHHh---CCCCEEEE-EcCCCHHhHHHHHHh
Confidence 5565 47899999999999999985 9995443 4566666666432 22233332 122356777777764
Q ss_pred C---CCCEEEec-----------CCCC--c-HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 N---LADVINIK-----------LAKV--G-VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ~---a~d~v~ik-----------~~~~--G-it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
. ..+.+.+= ..+. . +..+.+++++|+++|..+.+++...+
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~ 141 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAG 141 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 2 13333321 1111 2 34466799999999999999887544
No 259
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=66.85 E-value=1.8e+02 Score=31.01 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~----~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
.+.+...+++.++.+.|...+.+-+-. .++.+.++.|++. |-++.|..|-+-.+. -|+.-++.+++..++|-
T Consensus 42 ~D~~atv~Qi~~L~~aGceiVRvtvp~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~--~A~~a~~~vdkiRINPG 117 (606)
T PRK00694 42 TDVDGTVRQICALQEWGCDIVRVTVQG--LKEAQACEHIKERLIQQGISIPLVADIHFFPQ--AAMHVADFVDKVRINPG 117 (606)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhccCCCCCEEeecCCChH--HHHHHHHhcCceEECCc
Confidence 355667889999999999999998854 5777777777764 567999999987665 33344444444333221
Q ss_pred e-------eecC-CCCCC--------HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HH
Q 015161 264 L-------FEQP-VHRDD--------WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VL 326 (412)
Q Consensus 264 ~-------iEeP-~~~~d--------~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it 326 (412)
= |+.- ...++ .+.+..+.+..+ ..++||=.|=+..++. .++++... | +--| +.
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ak-e~~~~IRIGvN~GSL~--~~i~~~yG-~------tpegmVe 187 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCK-RLGKAMRIGVNHGSLS--ERVMQRYG-D------TIEGMVY 187 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHH-HCCCCEEEecCCcCch--HHHHHHhC-C------CHHHHHH
Confidence 1 1110 00111 122333332222 4588998888877775 33443211 2 2247 66
Q ss_pred HHHHHHHHHHHcCCcE
Q 015161 327 GALEIIEVVRASGLNL 342 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~ 342 (412)
.+++-+++|++.|..=
T Consensus 188 SAle~~~i~e~~~f~d 203 (606)
T PRK00694 188 SALEYIEVCEKLDYRD 203 (606)
T ss_pred HHHHHHHHHHHCCCCc
Confidence 7888888888877653
No 260
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=66.69 E-value=1.2e+02 Score=28.89 Aligned_cols=126 Identities=15% Similarity=0.173 Sum_probs=79.7
Q ss_pred eeecCCCHHHHHHHHHHHHHc-------CCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-------GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-------Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~ 250 (412)
.+.+..+.+|....++-.++. |-.-+|+.|-+|. -+.++.+++.+.. -.++.++- |..++ ..
T Consensus 76 NTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v 149 (267)
T CHL00162 76 NTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLP-----YINAD-PM 149 (267)
T ss_pred cCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEee-----cCCCC-HH
Confidence 355677888865544433332 5678999886332 2557777777775 34555552 33233 35
Q ss_pred HHHHHHcCCCCC-ceeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 251 VLEKLYEMGVTP-VLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 251 ~~~~l~~~~l~~-~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++|++.|... .=+=-|+-. .+...++.+. ++.++||..|=-+.+..|....++.| +|.+-+-
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~----e~~~vpVivdAGIgt~sDa~~AmElG-aDgVL~n 218 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIII----ENAKIPVIIDAGIGTPSEASQAMELG-ASGVLLN 218 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHH----HcCCCcEEEeCCcCCHHHHHHHHHcC-CCEEeec
Confidence 678888877421 112233332 3455566555 36789999999999999999999998 5776543
No 261
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=66.49 E-value=52 Score=34.93 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+..++-+.+|++.|-. .+==-++. .+.+.++++++.++ ..+.+|+.+|=. +++.-...+++. +|-+.+.|.
T Consensus 43 D~~atv~Qi~~L~~aGce--iVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIH-F~~~~A~~a~~~--vdkiRINPG 117 (606)
T PRK00694 43 DVDGTVRQICALQEWGCD--IVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIH-FFPQAAMHVADF--VDKVRINPG 117 (606)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecC-CChHHHHHHHHh--cCceEECCc
Confidence 345556666666666653 33333332 23455666655433 236799999966 455555555554 899999998
Q ss_pred CCcH-----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015161 322 KVGV-----------------------LGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 322 ~~Gi-----------------------t~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+|- .....+...|+++|+++-+|.-
T Consensus 118 Ni~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN 166 (606)
T PRK00694 118 NYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVN 166 (606)
T ss_pred ccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 8873 3567799999999999988654
No 262
>PLN02389 biotin synthase
Probab=66.46 E-value=94 Score=31.45 Aligned_cols=37 Identities=27% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc---chHHHHHHHHHHH
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV---ETRLAMGFAGHLS 361 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~---es~i~~~a~~hla 361 (412)
..+.++.++.|++.|+++..|.++ |+.--....++..
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~L 251 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTL 251 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHH
Confidence 667889999999999998766543 5543333344433
No 263
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=66.45 E-value=37 Score=30.53 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=63.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--CCC-CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH--HHHHHHHcCCCCEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PVH-RDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIVKGNLADVI 316 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--P~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i~~~a~d~v 316 (412)
..+.+++.++++.|.+. +. |+|= |+- ..-.+..+.+++ ...++||..+-.+.+.. .++.+.+.| +|++
T Consensus 9 ~~~~~~~~~~~~~l~~~-i~--~ieig~~~~~~~g~~~i~~i~~---~~~~~~i~~~~~v~~~~~~~~~~~~~aG-ad~i 81 (202)
T cd04726 9 LLDLEEALELAKKVPDG-VD--IIEAGTPLIKSEGMEAVRALRE---AFPDKIIVADLKTADAGALEAEMAFKAG-ADIV 81 (202)
T ss_pred CCCHHHHHHHHHHhhhc-CC--EEEcCCHHHHHhCHHHHHHHHH---HCCCCEEEEEEEeccccHHHHHHHHhcC-CCEE
Confidence 35789999999999998 75 9998 442 122444555543 12578998886655553 456667766 6887
Q ss_pred EecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 317 NIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 317 ~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
.+...- +.....++.+.++++|+++.+
T Consensus 82 ~~h~~~-~~~~~~~~i~~~~~~g~~~~v 108 (202)
T cd04726 82 TVLGAA-PLSTIKKAVKAAKKYGKEVQV 108 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHHcCCeEEE
Confidence 765432 222356678889999999974
No 264
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=66.09 E-value=1.1e+02 Score=28.24 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=95.6
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~ 263 (412)
.+-..++++....++.+.+-|++++.+-.-. ..-.+.++++++.+| +..+-|..-.+++|+.+. .+.|- .
T Consensus 18 Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~s--p~a~e~I~~l~~~~p--~~lIGAGTVL~~~q~~~a----~~aGa--~ 87 (211)
T COG0800 18 VIRGDDVEEALPLAKALIEGGIPAIEITLRT--PAALEAIRALAKEFP--EALIGAGTVLNPEQARQA----IAAGA--Q 87 (211)
T ss_pred EEEeCCHHHHHHHHHHHHHcCCCeEEEecCC--CCHHHHHHHHHHhCc--ccEEccccccCHHHHHHH----HHcCC--C
Confidence 3445689999999999999999999998853 344667888888888 677778888999987444 44664 3
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-CcHHHHHHHHHHHHHcCCcE
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~Git~~l~i~~~A~~~gi~~ 342 (412)
|+=-|--..+ ..+.+ .+.++|++-| +.|+.++..+++.| ++++-+=|.. +|-...++...-- --++++
T Consensus 88 fiVsP~~~~e---v~~~a----~~~~ip~~PG--~~TptEi~~Ale~G-~~~lK~FPa~~~Gg~~~~ka~~gP-~~~v~~ 156 (211)
T COG0800 88 FIVSPGLNPE---VAKAA----NRYGIPYIPG--VATPTEIMAALELG-ASALKFFPAEVVGGPAMLKALAGP-FPQVRF 156 (211)
T ss_pred EEECCCCCHH---HHHHH----HhCCCcccCC--CCCHHHHHHHHHcC-hhheeecCccccCcHHHHHHHcCC-CCCCeE
Confidence 7766743322 33333 2568999886 67889999999988 4665444444 3432333221100 124777
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 157 ~pTGGV 162 (211)
T COG0800 157 CPTGGV 162 (211)
T ss_pred eecCCC
Confidence 776543
No 265
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=65.54 E-value=49 Score=35.32 Aligned_cols=99 Identities=11% Similarity=0.107 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCC-CCHHHHHHhHHHhh-cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHR-DDWEGLGHVSHIAK-DKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~-~d~~~~~~l~~~~~-~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
+.+..++-+.+|++.|-. .+==-++. ++.+.++++++.++ ..+.+|+.+|=. +++.-...+++. +|-+.+.|.
T Consensus 39 D~~atv~Qi~~l~~aGce--iVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIH-F~~~~A~~a~~~--v~kiRINPG 113 (611)
T PRK02048 39 DTEACVAQAKRIIDAGGE--YVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVH-FNPKVADVAAQY--AEKVRINPG 113 (611)
T ss_pred cHHHHHHHHHHHHHcCCC--EEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecC-CCcHHHHHHHHh--hCCEEECCC
Confidence 345556666666666653 33333332 23455666655332 235799999966 444444555553 899999998
Q ss_pred CCc-H----------------------HHHHHHHHHHHHcCCcEEEccC
Q 015161 322 KVG-V----------------------LGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 322 ~~G-i----------------------t~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+| - .....+...|+++|+++-+|.-
T Consensus 114 N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN 162 (611)
T PRK02048 114 NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN 162 (611)
T ss_pred cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 887 3 3466799999999999988654
No 266
>PRK09389 (R)-citramalate synthase; Provisional
Probab=65.50 E-value=1e+02 Score=32.38 Aligned_cols=103 Identities=19% Similarity=0.352 Sum_probs=68.0
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCC---CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPV---HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~---~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. .||=-. ++.|++..+++.+ ......|+.-= -....|+..+++.
T Consensus 12 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~~~~d~e~v~~i~~---~~~~~~i~a~~-r~~~~di~~a~~~ 85 (488)
T PRK09389 12 DGEQTPGVSLTPEEKLEIARKLDELGVD--VIEAGSAITSEGEREAIKAVTD---EGLNAEICSFA-RAVKVDIDAALEC 85 (488)
T ss_pred CcCCCCCCCcCHHHHHHHHHHHHHcCCC--EEEEeCCcCCHHHHHHHHHHHh---cCCCcEEEeec-ccCHHHHHHHHhC
Confidence 5666 45789999999999999985 999843 3467777777764 22344444321 2346788888887
Q ss_pred CCCCEEEecCCCC-------------c-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 311 NLADVINIKLAKV-------------G-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 311 ~a~d~v~ik~~~~-------------G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+ ++.+.+=.... - +..+.+.+++|+++|+.+..+.+
T Consensus 86 g-~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e 135 (488)
T PRK09389 86 D-VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE 135 (488)
T ss_pred C-cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 6 45554322211 1 23466778999999998877654
No 267
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.02 E-value=1.3e+02 Score=31.58 Aligned_cols=97 Identities=15% Similarity=0.294 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC----HHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD----WEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d----~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
+.+++.+.++.|-+.++. .+|=+..+.. .+..+++++ .. +++|.+| ++.+.++++.+++.| +|++.
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g~~~~~~~~i~~ir~----~~~~~~~V~aG-nV~t~e~a~~li~aG-Ad~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEGYSEWQKRTLDWIRE----KYGDSVKVGAG-NVVDREGFRYLAEAG-ADFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCcccccHHHHHHHHHHHH----hCCCCceEEec-cccCHHHHHHHHHcC-CCEEE
Confidence 345678888999888875 7886666554 555666654 33 3677777 678899999999988 58875
Q ss_pred e----------c-CCCCc---HHHHHHHHHHHH----HcC--CcEEEccCc
Q 015161 318 I----------K-LAKVG---VLGALEIIEVVR----ASG--LNLMIGGMV 348 (412)
Q Consensus 318 i----------k-~~~~G---it~~l~i~~~A~----~~g--i~~~~~~~~ 348 (412)
+ . ..-+| ++...++++.++ ++| ++++..+-+
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGi 361 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGI 361 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCC
Confidence 4 1 22244 333444444333 347 888776544
No 268
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=64.95 E-value=46 Score=31.22 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=91.6
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CC-cEEEEeCCC-------CC------
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PD-SSFILDANE-------GY------ 243 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~-~~l~vDaN~-------~~------ 243 (412)
||.....++.+.+++ +++...|-. |+-+...-=.|-+.++.+.+.+ .. +.+.+|+-. .|
T Consensus 75 iPltVGGGI~s~eD~----~~ll~aGAD--KVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~g 148 (256)
T COG0107 75 IPLTVGGGIRSVEDA----RKLLRAGAD--KVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHG 148 (256)
T ss_pred eeeEecCCcCCHHHH----HHHHHcCCC--eeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecC
Confidence 343334456666554 455666765 4444322224556777777774 33 456677643 34
Q ss_pred ----CHHHHHHHHHHHHcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCC
Q 015161 244 ----KPQEAVEVLEKLYEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 244 ----~~~~A~~~~~~l~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~ 313 (412)
+--++++|++++++.|.. +.+=--+. -.|++-++.++ +...+|+.+.--+.++++|.+.+..+.+
T Consensus 149 Gr~~t~~d~~~Wa~~~e~~GAG-EIlLtsmD~DGtk~GyDl~l~~~v~----~~v~iPvIASGGaG~~ehf~eaf~~~~a 223 (256)
T COG0107 149 GREDTGLDAVEWAKEVEELGAG-EILLTSMDRDGTKAGYDLELTRAVR----EAVNIPVIASGGAGKPEHFVEAFTEGKA 223 (256)
T ss_pred CCcCCCcCHHHHHHHHHHcCCc-eEEEeeecccccccCcCHHHHHHHH----HhCCCCEEecCCCCcHHHHHHHHHhcCc
Confidence 235789999999998754 22211121 24566666665 4789999998889999999999987766
Q ss_pred CEEEec-CCCCcHHHHHHHHHHHHHcCCcE
Q 015161 314 DVINIK-LAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 314 d~v~ik-~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
|..-.- +-..|.....++-++.+++|+++
T Consensus 224 dAaLAAsiFH~~~~~i~evK~yL~~~gi~V 253 (256)
T COG0107 224 DAALAASIFHFGEITIGEVKEYLAEQGIEV 253 (256)
T ss_pred cHHHhhhhhhcCcccHHHHHHHHHHcCCCc
Confidence 653211 11224222344556667788775
No 269
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=64.77 E-value=1.2e+02 Score=29.19 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CCCcEEEEeC-----------CCCC-CHHHHHHHHHHHH-
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HPDSSFILDA-----------NEGY-KPQEAVEVLEKLY- 256 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~~~~l~vDa-----------N~~~-~~~~A~~~~~~l~- 256 (412)
+.+++..+.||+.+-+.-. .+.++.+++.+.+.+. +-.+..-+.. ...+ +++||.++.++..
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgv 167 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGV 167 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCc
Confidence 4455667789999988765 3455667766666652 2122211111 1224 5899999987542
Q ss_pred cC-C--CCCce-eecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 257 EM-G--VTPVL-FEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 257 ~~-~--l~~~~-iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
++ . +.+.+ +..-.+.-+++.++++++ .+++|+.+ |=|=.+.++++++++.| ++-+|+..
T Consensus 168 D~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~----~~~iPlv~hGgSGi~~e~i~~~i~~G-i~kiNv~T 231 (282)
T TIGR01859 168 DYLAAAIGTSHGKYKGEPGLDFERLKEIKE----LTNIPLVLHGASGIPEEQIKKAIKLG-IAKINIDT 231 (282)
T ss_pred CEEeeccCccccccCCCCccCHHHHHHHHH----HhCCCEEEECCCCCCHHHHHHHHHcC-CCEEEECc
Confidence 21 1 00001 111124456888888875 56799855 66777888999999987 56777754
No 270
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=64.77 E-value=1.3e+02 Score=28.47 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
.++++...++++++.+++....++=+.+-.-..+..+++.+.+++..++||
T Consensus 135 ~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l 185 (259)
T cd07939 135 RADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLPL 185 (259)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345555555555555554432344444443344444444333333334444
No 271
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=64.55 E-value=1.4e+02 Score=33.34 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=78.7
Q ss_pred HHHH-HHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCC--CcEE-----EEeCCC-CCCHHHHHHHHHHHHcCC
Q 015161 190 PAEA-AELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHP--DSSF-----ILDANE-GYKPQEAVEVLEKLYEMG 259 (412)
Q Consensus 190 ~~~~-~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~--~~~l-----~vDaN~-~~~~~~A~~~~~~l~~~~ 259 (412)
|+.+ .+.+++..+.|...|++-=.- .++.-.--+.++++++. +..+ ++|.|. .|+.+....++++|++.|
T Consensus 628 PDnVi~~Fvkqaa~~GIDvFRiFDsLNwv~~M~vaidAV~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~G 707 (1149)
T COG1038 628 PDNVIREFVKQAAKSGIDVFRIFDSLNWVEQMRVAIDAVREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAG 707 (1149)
T ss_pred chHHHHHHHHHHHhcCccEEEeehhhcchhhhhhHHHHHHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcC
Confidence 4554 556677778898888865321 22222234678888752 2222 567775 469999999999999998
Q ss_pred CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeC---CCCCCHHHHHHHHHcCCCCEE
Q 015161 260 VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAAD---ESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 260 l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~d---Es~~~~~~~~~~i~~~a~d~v 316 (412)
.++.-|-+--.--....-.+|...+|+.+++||-.. -|-.+......++++| +|++
T Consensus 708 aHIlaIKDMAGLLKP~AA~~Li~aLr~~~dlPIHlHTHDTsG~~~at~~aA~~AG-vDiv 766 (1149)
T COG1038 708 AHILAIKDMAGLLKPAAAYRLISALRETVDLPIHLHTHDTSGNGVATYLAAVEAG-VDIV 766 (1149)
T ss_pred CcEEEehhhhhccCHHHHHHHHHHHHHhcCCceEEeccCCCccHHHHHHHHHHcC-Cchh
Confidence 775444442211122333445556778899999664 3444556667777776 6765
No 272
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.40 E-value=84 Score=28.29 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV 323 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~ 323 (412)
+.+++.+.++.+-+.|+. |+|=.....+...+-+..+.+ ...+-+.. -.+...+++..+++.+ +|++..
T Consensus 22 ~~~~~~~~~~~~~~~Gv~--~vqlr~k~~~~~e~~~~~~~~--~~~~~~g~-gtvl~~d~~~~A~~~g-Adgv~~----- 90 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMR--LIEITWNSDQPAELISQLREK--LPECIIGT-GTILTLEDLEEAIAAG-AQFCFT----- 90 (187)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEEeCCCCCHHHHHHHHHHh--CCCcEEeE-EEEEcHHHHHHHHHcC-CCEEEC-----
Confidence 789999999999999986 999887765544333332211 11122222 3566668898888887 566622
Q ss_pred c-HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 324 G-VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 324 G-it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
| +. ..+...++.++++.++|+..
T Consensus 91 p~~~--~~~~~~~~~~~~~~i~G~~t 114 (187)
T PRK07455 91 PHVD--PELIEAAVAQDIPIIPGALT 114 (187)
T ss_pred CCCC--HHHHHHHHHcCCCEEcCcCC
Confidence 2 11 45567888999999999654
No 273
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=64.10 E-value=59 Score=31.17 Aligned_cols=94 Identities=21% Similarity=0.269 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeEecCCChhHHHHHHHHHHHhC-CCc---EE--EEe-CCCCC-----C---HHHHHHHH
Q 015161 189 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDS---SF--ILD-ANEGY-----K---PQEAVEVL 252 (412)
Q Consensus 189 ~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~---~l--~vD-aN~~~-----~---~~~A~~~~ 252 (412)
++++..+.+.+..+ .|...+|+-=| .+-.++++++++++ |=+ -| .-| ..++| + .+++++.+
T Consensus 91 ~~~~av~~a~r~~~~aGa~aVkiEdg---~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra 167 (264)
T PRK00311 91 SPEQALRNAGRLMKEAGAHAVKLEGG---EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDA 167 (264)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHH
Confidence 56776666655555 89999999865 34567888888864 200 00 111 11222 2 45788889
Q ss_pred HHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEE
Q 015161 253 EKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 253 ~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 293 (412)
+.+++.|....++|-+ +. +..+++++ +.++|+.
T Consensus 168 ~a~~eAGA~~i~lE~v-~~---~~~~~i~~----~l~iP~i 200 (264)
T PRK00311 168 KALEEAGAFALVLECV-PA---ELAKEITE----ALSIPTI 200 (264)
T ss_pred HHHHHCCCCEEEEcCC-CH---HHHHHHHH----hCCCCEE
Confidence 9999998765678876 33 34667765 5677874
No 274
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=63.84 E-value=13 Score=37.67 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCCCceeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC
Q 015161 249 VEVLEKLYEMGVTPVLFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK 322 (412)
Q Consensus 249 ~~~~~~l~~~~l~~~~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~ 322 (412)
-.+....++ +....|+|-|..| -|++.++++++ +.++.|+.|+++-++ -+.+.+..| +|++.--.+|
T Consensus 153 ~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~----~~g~~vvVDnTf~~p-~~~~pL~lG-ADIV~hSaTK 223 (409)
T KOG0053|consen 153 KKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAH----KYGFLVVVDNTFGSP-YNQDPLPLG-ADIVVHSATK 223 (409)
T ss_pred HHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHh----hCCCEEEEeCCcCcc-cccChhhcC-CCEEEEeeee
Confidence 344455555 3334699999886 57888888875 579999999999998 455667666 7998776666
No 275
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=63.65 E-value=1.3e+02 Score=28.69 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeE
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
+++...++++++.+.+..-..+=+-+-.-..+...++.+.+++..++||
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~~~i 187 (262)
T cd07948 139 DLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCDI 187 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 4455555555555544332344444443333333333333333334444
No 276
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=63.59 E-value=1.3e+02 Score=28.28 Aligned_cols=126 Identities=20% Similarity=0.224 Sum_probs=74.7
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
.+.+..+.+|....++-.++. |-.-||+.|-.|. -+.++.+++.+.. -.++.++- |..++ .-.+++|+
T Consensus 68 NTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlP-----Y~~~D-~v~akrL~ 141 (247)
T PF05690_consen 68 NTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLP-----YCTDD-PVLAKRLE 141 (247)
T ss_dssp E-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEE-----EE-S--HHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEee-----cCCCC-HHHHHHHH
Confidence 456777888876666655554 6788999886432 2456777777774 34555542 22233 45778899
Q ss_pred cCCCCCc-eeecCCCC----CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 257 EMGVTPV-LFEQPVHR----DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 257 ~~~l~~~-~iEeP~~~----~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.|.... =+=-|+-. .+...++.+++ +.++||..|=-+.++.|...+++.| +|.+-+.
T Consensus 142 d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~vPvIvDAGiG~pSdaa~AMElG-~daVLvN 204 (247)
T PF05690_consen 142 DAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RADVPVIVDAGIGTPSDAAQAMELG-ADAVLVN 204 (247)
T ss_dssp HTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGSSSBEEES---SHHHHHHHHHTT--SEEEES
T ss_pred HCCCCEEEecccccccCcCCCCHHHHHHHHH----hcCCcEEEeCCCCCHHHHHHHHHcC-Cceeehh
Confidence 8875311 22334442 34566666654 5699999999999999999999998 6887665
No 277
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=63.43 E-value=1.8e+02 Score=29.58 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-----CcHHHHHHHHHHHHHc--CCcEEE
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-----VGVLGALEIIEVVRAS--GLNLMI 344 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-----~Git~~l~i~~~A~~~--gi~~~~ 344 (412)
-+|+.+++|++ .+++||..-+. .+.+|.+.+++.| +|++.+.-.- .|+....-+.+++++. .++++.
T Consensus 240 ~tW~~i~~lr~----~~~~pvivKgV-~~~~dA~~a~~~G-~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 240 LTWEDLAFLRE----WTDLPIVLKGI-LHPDDARRAVEAG-VDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred CCHHHHHHHHH----hcCCCEEEecC-CCHHHHHHHHHCC-CCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 36788888864 67899999866 7799999999987 7887765321 1122222334444444 488888
Q ss_pred ccCcchHHHHHHHHHH
Q 015161 345 GGMVETRLAMGFAGHL 360 (412)
Q Consensus 345 ~~~~es~i~~~a~~hl 360 (412)
.+-+-++.-...++.|
T Consensus 314 dGGIr~G~Dv~KALaL 329 (383)
T cd03332 314 DSGVRTGADIMKALAL 329 (383)
T ss_pred eCCcCcHHHHHHHHHc
Confidence 7766555444444444
No 278
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.41 E-value=1.3e+02 Score=27.89 Aligned_cols=142 Identities=15% Similarity=0.172 Sum_probs=94.5
Q ss_pred ecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce
Q 015161 185 IPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL 264 (412)
Q Consensus 185 i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~ 264 (412)
+...++++..+.++.+.+.|++.+.+-+-. ..-.+.++.+|+.+|++. +=+-.-.+.+++.. ..+.|-. |
T Consensus 21 ~r~~~~~~a~~i~~al~~~Gi~~iEitl~~--~~~~~~I~~l~~~~p~~~--IGAGTVl~~~~a~~----a~~aGA~--F 90 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVTLRT--PAALEAIRLIAKEVPEAL--IGAGTVLNPEQLAQ----AIEAGAQ--F 90 (212)
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEecCC--ccHHHHHHHHHHHCCCCE--EEEeeccCHHHHHH----HHHcCCC--E
Confidence 345688999999999999999999988643 356677888888888744 44555566666533 3446754 8
Q ss_pred eecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-Cc-HHHHHHHHHHHHHcCCcE
Q 015161 265 FEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK-VG-VLGALEIIEVVRASGLNL 342 (412)
Q Consensus 265 iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~-~G-it~~l~i~~~A~~~gi~~ 342 (412)
+=-|.-..+ .-+.+. +.++|..-| +.|+.++.++.+.| ++++.+-+.. .| +.-...+...- -++++
T Consensus 91 ivsP~~~~~---vi~~a~----~~~i~~iPG--~~TptEi~~a~~~G-a~~vKlFPa~~~gg~~~lk~l~~p~--p~~~~ 158 (212)
T PRK05718 91 IVSPGLTPP---LLKAAQ----EGPIPLIPG--VSTPSELMLGMELG-LRTFKFFPAEASGGVKMLKALAGPF--PDVRF 158 (212)
T ss_pred EECCCCCHH---HHHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEEccchhccCHHHHHHHhccC--CCCeE
Confidence 877865432 233332 467888754 57888899999988 6888777765 34 33333333222 36888
Q ss_pred EEccCc
Q 015161 343 MIGGMV 348 (412)
Q Consensus 343 ~~~~~~ 348 (412)
++.+-+
T Consensus 159 ~ptGGV 164 (212)
T PRK05718 159 CPTGGI 164 (212)
T ss_pred EEeCCC
Confidence 886644
No 279
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=62.45 E-value=1.2e+02 Score=28.52 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHH-HHHHHh---CCCcEEEEeC------CCCCCHHHHHHHHHH-HH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL-RAIRAV---HPDSSFILDA------NEGYKPQEAVEVLEK-LY 256 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v-~avr~~---~~~~~l~vDa------N~~~~~~~A~~~~~~-l~ 256 (412)
.+.++..+..+.+.+.|++.|-.--.-.-....+.+ +++++. .+++.|.-=. ...++.+...+-+++ |+
T Consensus 14 ~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~ 93 (283)
T PF00248_consen 14 VSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLE 93 (283)
T ss_dssp STHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356777888888999999999865421001122223 455551 3455554333 234455554443332 44
Q ss_pred cCC---CCCceeecCCCCCC-----HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHH--cCCCCEEEecCCCCcHH
Q 015161 257 EMG---VTPVLFEQPVHRDD-----WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVK--GNLADVINIKLAKVGVL 326 (412)
Q Consensus 257 ~~~---l~~~~iEeP~~~~d-----~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~--~~a~d~v~ik~~~~Git 326 (412)
.++ +.++++-.|-.... ++.+.++. +.+.==..|=|.++...+..+.. ...++++|+..+-+--.
T Consensus 94 ~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~-----~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~ 168 (283)
T PF00248_consen 94 RLGTDYIDLLLLHWPDPSEDALEEVWEALEELK-----KEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRR 168 (283)
T ss_dssp HHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHH-----HTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHB
T ss_pred cccccchhccccccccccccccchhhhhhhhcc-----cccccccccccccccccccccccccccccccccccccccccc
Confidence 333 22346666665544 33344443 23544455666777888888733 33467777765544112
Q ss_pred HHHHHHHHHHHcCCcEEEccCcchH
Q 015161 327 GALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
.-..+..+|+++|+.++..+.+..+
T Consensus 169 ~~~~l~~~~~~~gi~v~a~~~l~~G 193 (283)
T PF00248_consen 169 EEEGLLEFCREHGIGVIAYSPLAGG 193 (283)
T ss_dssp GGHHHHHHHHHTT-EEEEESTTGGG
T ss_pred ccccccccccccccccccccccccC
Confidence 3356778999999999987776543
No 280
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=61.85 E-value=1.2e+02 Score=27.12 Aligned_cols=114 Identities=17% Similarity=0.137 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC-CCCCceeecCC-CCCCH
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM-GVTPVLFEQPV-HRDDW 274 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~-~l~~~~iEeP~-~~~d~ 274 (412)
++.+.+.|...+=+..-...+...+.++.+++. ++.+.++.-+..|++++.+....-.++ .+.+.+-.+-. .....
T Consensus 70 ~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~ 147 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPE 147 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCH
Confidence 456677898888887654333334456666653 588999988888998877633311121 11100001111 13334
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.++++++ ..++||..+=-+ +.+.+.++++.| +|++.+
T Consensus 148 ~~i~~~~~----~~~~~i~~~GGI-~~~~i~~~~~~G-ad~vvv 185 (202)
T cd04726 148 DDLKKVKK----LLGVKVAVAGGI-TPDTLPEFKKAG-ADIVIV 185 (202)
T ss_pred HHHHHHHh----hcCCCEEEECCc-CHHHHHHHHhcC-CCEEEE
Confidence 55555542 257888887776 478888888877 566543
No 281
>PLN02979 glycolate oxidase
Probab=61.24 E-value=1.9e+02 Score=29.18 Aligned_cols=84 Identities=14% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC---c--HHHHHHHHHHHHHc--CCcEE
Q 015161 271 RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV---G--VLGALEIIEVVRAS--GLNLM 343 (412)
Q Consensus 271 ~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~---G--it~~l~i~~~A~~~--gi~~~ 343 (412)
.-+|+.+++|++ .+++||..-|- .+.+|++++.+.| +|.+.+.-.-- . +....-+.+.+++. .++++
T Consensus 209 ~ltW~dl~wlr~----~~~~PvivKgV-~~~~dA~~a~~~G-vd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi 282 (366)
T PLN02979 209 TLSWKDVQWLQT----ITKLPILVKGV-LTGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVF 282 (366)
T ss_pred CCCHHHHHHHHh----ccCCCEEeecC-CCHHHHHHHHhcC-CCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEE
Confidence 346788888864 68899999987 4789999999987 78876654321 1 12222233344443 48888
Q ss_pred EccCcchHHHHHHHHHH
Q 015161 344 IGGMVETRLAMGFAGHL 360 (412)
Q Consensus 344 ~~~~~es~i~~~a~~hl 360 (412)
.++-+.++.-..-++.|
T Consensus 283 ~dGGIr~G~Di~KALAL 299 (366)
T PLN02979 283 LDGGVRRGTDVFKALAL 299 (366)
T ss_pred EeCCcCcHHHHHHHHHc
Confidence 88766555544444443
No 282
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=61.20 E-value=1.5e+02 Score=28.18 Aligned_cols=163 Identities=18% Similarity=0.255 Sum_probs=88.3
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCC----------------------ChhHHHHHHHHHHHhCCCcE--
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGK----------------------NLKEDIEVLRAIRAVHPDSS-- 234 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~----------------------~~~~D~~~v~avr~~~~~~~-- 234 (412)
+-.|.+.+.-+.+...+.+..+.+.|-..+.+-+-. ++++-.+.++++|+..+++.
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 344667777777888888888888898888877641 23344666777775444443
Q ss_pred EEEeCCCCC--CHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC-eEEeCCCCCCHHHHHHHHHcC
Q 015161 235 FILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV-SVAADESCRSLDDVKKIVKGN 311 (412)
Q Consensus 235 l~vDaN~~~--~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i-pIa~dEs~~~~~~~~~~i~~~ 311 (412)
+|.-.|--| ..+ +|++.+.+.|+.=..+ =-++.++.+.+.+..+ +.++ +|..-=.-++.+.++.+.+.
T Consensus 94 lm~Y~N~i~~~G~e---~f~~~~~~aGvdGvii-pDLp~ee~~~~~~~~~----~~gl~~I~lvap~t~~eri~~i~~~- 164 (258)
T PRK13111 94 LMTYYNPIFQYGVE---RFAADAAEAGVDGLII-PDLPPEEAEELRAAAK----KHGLDLIFLVAPTTTDERLKKIASH- 164 (258)
T ss_pred EEecccHHhhcCHH---HHHHHHHHcCCcEEEE-CCCCHHHHHHHHHHHH----HcCCcEEEEeCCCCCHHHHHHHHHh-
Confidence 555567544 334 5777787776531233 2244454545554433 3443 33322222334555555543
Q ss_pred CCCEEEecCCCCcHHH--------HHHHHHHHHH-cCCcEEEccCcchH
Q 015161 312 LADVINIKLAKVGVLG--------ALEIIEVVRA-SGLNLMIGGMVETR 351 (412)
Q Consensus 312 a~d~v~ik~~~~Git~--------~l~i~~~A~~-~gi~~~~~~~~es~ 351 (412)
+-+++-. ++..|.|+ ..+.++..++ .++++++|.-+.++
T Consensus 165 s~gfIY~-vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~ 212 (258)
T PRK13111 165 ASGFVYY-VSRAGVTGARSADAADLAELVARLKAHTDLPVAVGFGISTP 212 (258)
T ss_pred CCCcEEE-EeCCCCCCcccCCCccHHHHHHHHHhcCCCcEEEEcccCCH
Confidence 3333322 22233222 3334444554 48899887655443
No 283
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=60.95 E-value=1.1e+02 Score=29.51 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC--------------------CCCH--HHHHHH
Q 015161 194 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE--------------------GYKP--QEAVEV 251 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~--------------------~~~~--~~A~~~ 251 (412)
..+++.+.+.|-..+- .-..++-.-+.++.++..+ ++.+|-|+.. +||. .+|++.
T Consensus 77 ~~Ea~~L~eaGvDiID--aT~r~rP~~~~~~~iK~~~-~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~ 153 (283)
T cd04727 77 FVEAQILEALGVDMID--ESEVLTPADEEHHIDKHKF-KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRH 153 (283)
T ss_pred HHHHHHHHHcCCCEEe--ccCCCCcHHHHHHHHHHHc-CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHH
Confidence 4566667777877773 2111111344566666666 7788888653 3443 355555
Q ss_pred HHHHHc--CCCCCceeecCC------CCCCHHHHHHhHHHhhcccCCeEE--eCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 252 LEKLYE--MGVTPVLFEQPV------HRDDWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 252 ~~~l~~--~~l~~~~iEeP~------~~~d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+.+.. ..+. -|-|+-+ ..-+++.++++.+ ..++||. +-=.+++++++.++++.| +|.+.+
T Consensus 154 ~~~i~~~i~~~~-gyt~~t~~~~~~~~~~d~elLk~l~~----~~~iPVV~iAeGGI~Tpena~~v~e~G-AdgVaV 224 (283)
T cd04727 154 MRAVNGEIRKLQ-SMSEEELYAVAKEIQAPYELVKETAK----LGRLPVVNFAAGGVATPADAALMMQLG-ADGVFV 224 (283)
T ss_pred HHHHHHHHHHHh-CCCHHHHHhhhcccCCCHHHHHHHHH----hcCCCeEEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 554421 0000 1334332 1346788888875 4579996 333578999999999988 455543
No 284
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=60.89 E-value=1.2e+02 Score=27.04 Aligned_cols=139 Identities=16% Similarity=0.248 Sum_probs=85.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
...++++..+.++.+.+.|++.+-+.+.. ....+.++.+++.+|++.+- +-.-.+.+++ +.+.+.+.. ++
T Consensus 11 r~~~~~~~~~~~~~l~~~G~~~vev~~~~--~~~~~~i~~l~~~~~~~~iG--ag~v~~~~~~----~~a~~~Ga~--~i 80 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIEITLRT--PGALEAIRALRKEFPEALIG--AGTVLTPEQA----DAAIAAGAQ--FI 80 (190)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--hhHHHHHHHHHHHCCCCEEE--EEeCCCHHHH----HHHHHcCCC--EE
Confidence 34578888899999999999999998763 34666888888887764433 3333445543 222234432 45
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC-cHHHHHHHHHHHHHc-CCcEE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRAS-GLNLM 343 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~-Git~~l~i~~~A~~~-gi~~~ 343 (412)
==|- .+. .+.+.++ ..++++..|=+ |+.++.++.+.| +|++.+.+... |. +.++ .+.+.. +++++
T Consensus 81 ~~p~--~~~-~~~~~~~----~~~~~~i~gv~--t~~e~~~A~~~G-ad~i~~~p~~~~g~-~~~~--~l~~~~~~~p~~ 147 (190)
T cd00452 81 VSPG--LDP-EVVKAAN----RAGIPLLPGVA--TPTEIMQALELG-ADIVKLFPAEAVGP-AYIK--ALKGPFPQVRFM 147 (190)
T ss_pred EcCC--CCH-HHHHHHH----HcCCcEECCcC--CHHHHHHHHHCC-CCEEEEcCCcccCH-HHHH--HHHhhCCCCeEE
Confidence 3332 332 2333332 35788877544 899999998876 79999886543 32 2222 223333 47777
Q ss_pred EccC
Q 015161 344 IGGM 347 (412)
Q Consensus 344 ~~~~ 347 (412)
..+-
T Consensus 148 a~GG 151 (190)
T cd00452 148 PTGG 151 (190)
T ss_pred EeCC
Confidence 6543
No 285
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=60.78 E-value=1.6e+02 Score=28.14 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHH----HHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC-CC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVL----RAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV-TP 262 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v----~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l-~~ 262 (412)
.+.+.+.+.+++..++|-..+-+-.+...+++.+++ +.+++.. ++.|.+|....=..+.|++.++ ...+ +-
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsIDT~~~~v~eaaL~~~~---G~~iINs 97 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCIDSPNPAAIEAGLKVAK---GPPLINS 97 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEEeCCCHHHHHHHHHhCC---CCCEEEe
Confidence 356778889999999999999998886555556654 3333333 6889999765544455544422 1111 10
Q ss_pred ceeecCCCCCCHHHHHHhHHHhhcccCCeEEe---CCC-CC-CH----HHHHH----HHHcCCC--CEEEecCCCC--c-
Q 015161 263 VLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA---DES-CR-SL----DDVKK----IVKGNLA--DVINIKLAKV--G- 324 (412)
Q Consensus 263 ~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~---dEs-~~-~~----~~~~~----~i~~~a~--d~v~ik~~~~--G- 324 (412)
.+-|+ +..+.+..+.+ ++++|+.. |+. .. +. ..+.+ +.+.| + +=+.+||.-. |
T Consensus 98 Is~~~----~~~~~~~~l~~----~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~G-I~~~~IilDPgi~~~~~ 168 (261)
T PRK07535 98 VSAEG----EKLEVVLPLVK----KYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYG-IPPEDIYIDPLVLPLSA 168 (261)
T ss_pred CCCCC----ccCHHHHHHHH----HhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcC-CCHhHEEEeCCCCcccC
Confidence 13332 11334555543 45677762 321 11 11 22222 33334 4 3456887553 2
Q ss_pred ----HHHHHHHHHHHHHc--CCcEEEcc
Q 015161 325 ----VLGALEIIEVVRAS--GLNLMIGG 346 (412)
Q Consensus 325 ----it~~l~i~~~A~~~--gi~~~~~~ 346 (412)
..+.++.++..++. |+++.+|-
T Consensus 169 ~~~~~~~~l~~i~~l~~~~pg~p~l~G~ 196 (261)
T PRK07535 169 AQDAGPEVLETIRRIKELYPKVHTTCGL 196 (261)
T ss_pred ChHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 22346666766665 89988764
No 286
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=60.70 E-value=1.2e+02 Score=28.69 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCC--CceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHH
Q 015161 249 VEVLEKLYEMGVT--PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 326 (412)
Q Consensus 249 ~~~~~~l~~~~l~--~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git 326 (412)
.++++.+++.|.. .+.-|+-.-..+++.++++++ .+.+||-.-.-+.+..++.+....| +|.+.+=....+-.
T Consensus 64 ~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~----~v~~PvL~KDFIid~~QI~ea~~~G-ADavLLI~~~L~~~ 138 (247)
T PRK13957 64 VQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSS----ELKIPVLRKDFILDEIQIREARAFG-ASAILLIVRILTPS 138 (247)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHH----hcCCCEEeccccCCHHHHHHHHHcC-CCEEEeEHhhCCHH
Confidence 4566667666532 124455555677888888764 5789999999999999999888866 68886655444544
Q ss_pred HHHHHHHHHHHcCCcEEEccC
Q 015161 327 GALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~~ 347 (412)
...++...|+..|+.+.+-..
T Consensus 139 ~l~~l~~~a~~lGle~LVEVh 159 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEVH 159 (247)
T ss_pred HHHHHHHHHHHcCCceEEEEC
Confidence 678899999999999876443
No 287
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=60.63 E-value=1.8e+02 Score=28.86 Aligned_cols=134 Identities=16% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCCCCceee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFE 266 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l~~~~iE 266 (412)
.+.+...+++.++.+.|...+.+-+-. .++.+.+..|++.. .+.|..|-+--|.. |+.-+.. ++...++
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~--~~~A~al~~I~~~~-~iPlVADIHFd~~l--Al~a~~~g~dkiRIN----- 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPD--RESAAAFEAIKEGT-NVPLVADIHFDYRL--AALAMAKGVAKVRIN----- 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHhCC-CCCEEEeeCCCcHH--HHHHHHhccCeEEEC-----
Confidence 355667889999999999999998853 57788888888844 48899999876643 3333222 4444443
Q ss_pred cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCc
Q 015161 267 QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 341 (412)
Q Consensus 267 eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~ 341 (412)
|=.-.+.+..+++.+..+ ..++||=.|=+.-+++ +++++...- ++--+ +..+++-+++++++|..
T Consensus 101 -PGNig~~e~v~~vv~~ak-~~~ipIRIGVN~GSL~--~~~~~kyg~------~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 101 -PGNIGFRERVRDVVEKAR-DHGKAMRIGVNHGSLE--RRLLEKYGD------ATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred -CCCCCCHHHHHHHHHHHH-HCCCCEEEecCCCCCc--HHHHHHcCC------CCHHHHHHHHHHHHHHHHHCCCC
Confidence 333333445555554433 4588998887777765 344443211 22235 45566777777776654
No 288
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=60.43 E-value=1.8e+02 Score=28.62 Aligned_cols=99 Identities=20% Similarity=0.342 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc----EE----------EEeCCC-CCC-HHHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF----------ILDANE-GYK-PQEAVEVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~----~l----------~vDaN~-~~~-~~~A~~~~~~l 255 (412)
+.+.++.+.||+.+=+.-. -+.++.++.-+.+.+. . -++ +| ..+.+. -|| +++|.+|+++.
T Consensus 88 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~T 167 (307)
T PRK05835 88 ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKES 167 (307)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhh
Confidence 4456677889999999877 3667777776666542 1 111 11 111121 254 99999999875
Q ss_pred H----------cCCCCCcee--ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH
Q 015161 256 Y----------EMGVTPVLF--EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD 302 (412)
Q Consensus 256 ~----------~~~l~~~~i--EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~ 302 (412)
. -.|. |- .+| .-|++-++++++ .+++|+.+.=.-..++
T Consensus 168 gvD~LAvaiGt~HG~---Yk~~~~p--~L~f~~L~~I~~----~~~iPLVLHGgSGip~ 217 (307)
T PRK05835 168 QVDYLAPAIGTSHGA---FKFKGEP--KLDFERLQEVKR----LTNIPLVLHGASAIPD 217 (307)
T ss_pred CCCEEEEccCccccc---cCCCCCC--ccCHHHHHHHHH----HhCCCEEEeCCCCCch
Confidence 3 1232 32 443 467888888875 5689998855444444
No 289
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=60.05 E-value=1.7e+02 Score=28.33 Aligned_cols=120 Identities=19% Similarity=0.221 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCCh---hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNL---KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~---~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
+++...+.++...+.|+..+-+.++... ..+.+.++.+++..+ ..+.+=- -.+.++| +.+.+.|+....+
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~-~pvivK~--v~s~~~a----~~a~~~G~d~I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWK-GPLILKG--ILTPEDA----LRAVDAGADGIVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcC-CCEEEee--cCCHHHH----HHHHHCCCCEEEE
Confidence 5677777777777889999999887321 123467788888633 2333321 2445554 4555666542233
Q ss_pred e-----cC-CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 266 E-----QP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 266 E-----eP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
. +. .....++.+.++++.+ ...+||.++--+.+..|+.+++..| +|.+++
T Consensus 200 ~~~gG~~~~~g~~~~~~l~~i~~~~--~~~ipvia~GGI~~~~d~~kal~lG-Ad~V~i 255 (299)
T cd02809 200 SNHGGRQLDGAPATIDALPEIVAAV--GGRIEVLLDGGIRRGTDVLKALALG-ADAVLI 255 (299)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHh--cCCCeEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 1 11 1123466666665422 1159999999999999999999987 677755
No 290
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=59.88 E-value=1.5e+02 Score=27.49 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCCEEeEecC--CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCC------cee
Q 015161 194 AELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTP------VLF 265 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG--~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~------~~i 265 (412)
.+++.++.+.|-..+-+..- ..++.+++.+-.- ...+++-+|.|.. +++|++.-.+ .|+.. -|-
T Consensus 88 lkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~-~k~~~~l~MAD~S---t~ee~l~a~~----~G~D~IGTTLsGYT 159 (229)
T COG3010 88 LKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR-IKYPGQLAMADCS---TFEEGLNAHK----LGFDIIGTTLSGYT 159 (229)
T ss_pred HHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH-hhcCCcEEEeccC---CHHHHHHHHH----cCCcEEeccccccc
Confidence 45566677889999888765 2233355443222 3478999999986 3566532211 22110 133
Q ss_pred e---cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 266 E---QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 266 E---eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
+ .|.. .|++-+++|. +.+.++.+--...++...++.++.|+.-++
T Consensus 160 ~~~~~~~~-pDf~lvk~l~-----~~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVv 207 (229)
T COG3010 160 GYTEKPTE-PDFQLVKQLS-----DAGCRVIAEGRYNTPEQAKKAIEIGADAVV 207 (229)
T ss_pred CCCCCCCC-CcHHHHHHHH-----hCCCeEEeeCCCCCHHHHHHHHHhCCeEEE
Confidence 3 4443 3577777776 368999988899999999999999864443
No 291
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=59.82 E-value=2e+02 Score=29.47 Aligned_cols=167 Identities=20% Similarity=0.272 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHcCCCEEeEecCCC-------h-hHHHHHHHHHHHhCCCcEEEE---eCC----CCCCHHHHHHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKVGKN-------L-KEDIEVLRAIRAVHPDSSFIL---DAN----EGYKPQEAVEVLEK 254 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKvG~~-------~-~~D~~~v~avr~~~~~~~l~v---DaN----~~~~~~~A~~~~~~ 254 (412)
-+++...++.+.+-||..+.+--|.. + ++-++|++++|+..++..|.+ --| ..|.-+-.-+|+++
T Consensus 27 t~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~k 106 (472)
T COG5016 27 TEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEK 106 (472)
T ss_pred HHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHH
Confidence 46777888888889999999877732 2 244789999999866544311 112 12333334468888
Q ss_pred HHcCCCCCceeecCCCCCCHHHHHHhHHHhhc---ccCCeEEeCCC-CCCHHHH----HHHHHcCCCCEEEecCCCCc-H
Q 015161 255 LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKD---KFGVSVAADES-CRSLDDV----KKIVKGNLADVINIKLAKVG-V 325 (412)
Q Consensus 255 l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~---~~~ipIa~dEs-~~~~~~~----~~~i~~~a~d~v~ik~~~~G-i 325 (412)
..+.|+.+.=|=+-+. |...++.-.+..+. +...-|+..-| +++.+-+ +++.+.+ +|.+.+|-+- | +
T Consensus 107 a~~nGidvfRiFDAlN--D~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g-~DSIciKDma-Gll 182 (472)
T COG5016 107 AAENGIDVFRIFDALN--DVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMG-VDSICIKDMA-GLL 182 (472)
T ss_pred HHhcCCcEEEechhcc--chhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcC-CCEEEeeccc-ccC
Confidence 8888876544555543 33333332211111 11223344433 5565533 4455555 7999998654 7 4
Q ss_pred H--HHHHHHHHHH-HcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 326 L--GALEIIEVVR-ASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 326 t--~~l~i~~~A~-~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
+ .+.+++...+ ..++++.+||.--++++ -..+++|
T Consensus 183 tP~~ayelVk~iK~~~~~pv~lHtH~TsG~a--~m~ylkA 220 (472)
T COG5016 183 TPYEAYELVKAIKKELPVPVELHTHATSGMA--EMTYLKA 220 (472)
T ss_pred ChHHHHHHHHHHHHhcCCeeEEecccccchH--HHHHHHH
Confidence 4 4566555554 47999999987555554 4445554
No 292
>PRK07094 biotin synthase; Provisional
Probab=58.94 E-value=1.5e+02 Score=28.92 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHcCCcEEEcc
Q 015161 325 VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~ 346 (412)
..+.++.++.++++|+.+..+.
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceE
Confidence 4566777777777777664433
No 293
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=58.86 E-value=3.6e+02 Score=31.65 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHH--cCCCEEeEecCCC-------h-hHHHHHHHHHHHhCCCcEEEEeCCC----CCC--HHHH-HHHHH
Q 015161 191 AEAAELASKYRK--QGFTTLKLKVGKN-------L-KEDIEVLRAIRAVHPDSSFILDANE----GYK--PQEA-VEVLE 253 (412)
Q Consensus 191 ~~~~~~~~~~~~--~Gf~~~KiKvG~~-------~-~~D~~~v~avr~~~~~~~l~vDaN~----~~~--~~~A-~~~~~ 253 (412)
+++...+..+.+ .||..+.+--|.. + +.-++||+.+|+..|++.+-+=..+ +|+ +++. ..|++
T Consensus 553 ~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~ 632 (1143)
T TIGR01235 553 HDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVK 632 (1143)
T ss_pred HHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHH
Confidence 455666666555 4998888776621 1 2447899999999888765322222 354 4554 45778
Q ss_pred HHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC----eEEeC-------CCCCCHHH----HHHHHHcCCCCEEEe
Q 015161 254 KLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV----SVAAD-------ESCRSLDD----VKKIVKGNLADVINI 318 (412)
Q Consensus 254 ~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i----pIa~d-------Es~~~~~~----~~~~i~~~a~d~v~i 318 (412)
...+.|+.+..|=+++. |.+.+....+..++ .+. -|+-- ...++++- ++++.+.| +|.+.+
T Consensus 633 ~~~~~GidifrifD~lN--~~~n~~~~~~~~~~-~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~G-ad~I~i 708 (1143)
T TIGR01235 633 QAAQGGIDIFRVFDSLN--WVENMRVGMDAVAE-AGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAG-AHILGI 708 (1143)
T ss_pred HHHHcCCCEEEECccCc--CHHHHHHHHHHHHH-cCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcC-CCEEEE
Confidence 88888888778888875 45555554443332 232 22221 22455552 34444555 788888
Q ss_pred cCCCCc-HH--HHHHHHHHH-HHcCCcEEEccCcchHHHHH
Q 015161 319 KLAKVG-VL--GALEIIEVV-RASGLNLMIGGMVETRLAMG 355 (412)
Q Consensus 319 k~~~~G-it--~~l~i~~~A-~~~gi~~~~~~~~es~i~~~ 355 (412)
|=+- | ++ .+.+++... ++.++++.+|+...++++.+
T Consensus 709 kDt~-Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~a 748 (1143)
T TIGR01235 709 KDMA-GLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVA 748 (1143)
T ss_pred CCCc-CCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHH
Confidence 8654 6 33 455554444 34589999988654444433
No 294
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=58.85 E-value=1.3e+02 Score=28.67 Aligned_cols=100 Identities=16% Similarity=0.306 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeec--CC-CCCCHHHHHHhHHHhhccc-CCeEEe-C---CC---CCCHHHHHHHHHc
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKF-GVSVAA-D---ES---CRSLDDVKKIVKG 310 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~-~ipIa~-d---Es---~~~~~~~~~~i~~ 310 (412)
.++.++-+++++.|.+.|+. .||= |. .+.+.+.++++.+. .. +..+.. . +. ..+..+++.+++.
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~--~IE~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~ 90 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFARAKKL---KLKHAKLAAFGSTRRAGVKAEEDPNLQALLEA 90 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCC--EEEecCCcCCHHHHHHHHHHHHc---CCCCcEEEEEecccccCCCccchHHHHHHHhC
Confidence 46789999999999999985 9997 43 44555555555431 11 233332 1 11 1223456667766
Q ss_pred CCCCEEEecCCC--------Cc------HHHHHHHHHHHHHcCCcEEEccC
Q 015161 311 NLADVINIKLAK--------VG------VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 311 ~a~d~v~ik~~~--------~G------it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+ ++.+.+-... .| +....+++++|+++|+.+..+.+
T Consensus 91 g-~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~ 140 (273)
T cd07941 91 G-TPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAE 140 (273)
T ss_pred C-CCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEE
Confidence 5 6766653221 12 23457789999999999877543
No 295
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=58.29 E-value=1.1e+02 Score=32.28 Aligned_cols=110 Identities=15% Similarity=0.359 Sum_probs=66.6
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCC---HHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHH
Q 015161 234 SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDD---WEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVK 309 (412)
Q Consensus 234 ~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d---~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~ 309 (412)
+|++-|.-+-+ .++.+.++.|-+.++.+.-+--+ +-+. |+..+++++ .. +++|..+ .+.+.++.+++++
T Consensus 236 ~l~vgaavg~~-~~~~~r~~~l~~ag~d~i~iD~~-~g~~~~~~~~i~~ik~----~~p~~~vi~g-~v~t~e~a~~a~~ 308 (505)
T PLN02274 236 KLLVGAAIGTR-ESDKERLEHLVKAGVDVVVLDSS-QGDSIYQLEMIKYIKK----TYPELDVIGG-NVVTMYQAQNLIQ 308 (505)
T ss_pred CEEEEEEEcCC-ccHHHHHHHHHHcCCCEEEEeCC-CCCcHHHHHHHHHHHH----hCCCCcEEEe-cCCCHHHHHHHHH
Confidence 45554443333 34456777777777654444432 2222 244555543 33 4788665 3578999999999
Q ss_pred cCCCCEEEecC-----------CCCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 310 GNLADVINIKL-----------AKVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 310 ~~a~d~v~ik~-----------~~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
.| +|++.+-. +.+| ++....+.+++++.+++++.-+-+.++
T Consensus 309 aG-aD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~ 363 (505)
T PLN02274 309 AG-VDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNS 363 (505)
T ss_pred cC-cCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCH
Confidence 87 78885521 1123 334556888888899999886655444
No 296
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.43 E-value=1.6e+02 Score=27.32 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=72.7
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCC------CC------CHHH
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANE------GY------KPQE 247 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~------~~------~~~~ 247 (412)
|+.+..++.+.+++ +++.+.|+..+ =+|...- |.+.++.+.+.++++.+.+|+.. +| ++.+
T Consensus 75 pv~~gGGIrs~edv----~~l~~~G~~~v--ivGtaa~-~~~~l~~~~~~~g~ivvslD~~~g~v~~~gw~~~~~~~~~~ 147 (228)
T PRK04128 75 KVQVGGGLRTYESI----KDAYEIGVENV--IIGTKAF-DLEFLEKVTSEFEGITVSLDVKGGRIAVKGWLEESSIKVED 147 (228)
T ss_pred CEEEcCCCCCHHHH----HHHHHCCCCEE--EECchhc-CHHHHHHHHHHcCCEEEEEEccCCeEecCCCeEcCCCCHHH
Confidence 33444456666554 44556687643 4563322 67788888887777899999843 23 4555
Q ss_pred HHHHHHHHHcCCCCCceeecCCCCC-CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 248 AVEVLEKLYEMGVTPVLFEQPVHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 248 A~~~~~~l~~~~l~~~~iEeP~~~~-d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+++++.+.. .+|=--+..+ -..|+.++.+. ..++||.+.=-+.+.+|+.++.+.|+-.++.-+
T Consensus 148 ~~~~~~~~~~-----~ii~t~i~~dGt~~G~d~l~~~---~~~~pviasGGv~~~~Dl~~l~~~g~~gvivg~ 212 (228)
T PRK04128 148 AYEMLKNYVN-----RFIYTSIERDGTLTGIEEIERF---WGDEEFIYAGGVSSAEDVKKLAEIGFSGVIIGK 212 (228)
T ss_pred HHHHHHHHhC-----EEEEEeccchhcccCHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEh
Confidence 5555555411 1333334333 22343344431 146899888888999999988886643334333
No 297
>PRK06256 biotin synthase; Validated
Probab=56.98 E-value=1.3e+02 Score=29.63 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
....++.++.|+++|+.+..+.++
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I~ 209 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGII 209 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeEE
Confidence 566778888888899887665443
No 298
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.37 E-value=1.7e+02 Score=27.22 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHH----hCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA----VHPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~----~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
-..++++..+.++.+.+.|++.+.+-.-. ..-.+.++.+++ .+| .+.+=+..-.|.+++.+. .+.|..
T Consensus 22 r~~~~~~a~~~~~al~~gGi~~iEiT~~t--p~a~~~i~~l~~~~~~~~p--~~~vGaGTVl~~e~a~~a----~~aGA~ 93 (222)
T PRK07114 22 YHADVEVAKKVIKACYDGGARVFEFTNRG--DFAHEVFAELVKYAAKELP--GMILGVGSIVDAATAALY----IQLGAN 93 (222)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CcHHHHHHHHHHHHHhhCC--CeEEeeEeCcCHHHHHHH----HHcCCC
Confidence 34588899999999999999999998852 234455556653 355 477888888999987543 346754
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC-cHHHHHHHHHHHHHcCC
Q 015161 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV-GVLGALEIIEVVRASGL 340 (412)
Q Consensus 262 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~-Git~~l~i~~~A~~~gi 340 (412)
|+=-|.-..+. -+.++ +.++|+.-| +.|+.++.++++.| ++++.+=|... |..-...+..-- -++
T Consensus 94 --FiVsP~~~~~v---~~~~~----~~~i~~iPG--~~TpsEi~~A~~~G-a~~vKlFPA~~~G~~~ikal~~p~--p~i 159 (222)
T PRK07114 94 --FIVTPLFNPDI---AKVCN----RRKVPYSPG--CGSLSEIGYAEELG-CEIVKLFPGSVYGPGFVKAIKGPM--PWT 159 (222)
T ss_pred --EEECCCCCHHH---HHHHH----HcCCCEeCC--CCCHHHHHHHHHCC-CCEEEECcccccCHHHHHHHhccC--CCC
Confidence 88778654333 33332 468898876 67999999999988 68887777655 433222222222 368
Q ss_pred cEEEccCc
Q 015161 341 NLMIGGMV 348 (412)
Q Consensus 341 ~~~~~~~~ 348 (412)
++++.+-+
T Consensus 160 ~~~ptGGV 167 (222)
T PRK07114 160 KIMPTGGV 167 (222)
T ss_pred eEEeCCCC
Confidence 88887654
No 299
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=56.36 E-value=1.2e+02 Score=28.00 Aligned_cols=119 Identities=17% Similarity=0.225 Sum_probs=67.2
Q ss_pred CCCHHHHHHHHHHHHHc-CCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCc--
Q 015161 187 IVSPAEAAELASKYRKQ-GFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPV-- 263 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~-- 263 (412)
..+.+++.++++.+.+. |...+|+-+-. .-++.++.+++.+ +.+=+-.-|+++||...++.-.+| +.|+
T Consensus 60 ~~~~e~~i~~a~~l~~~~~~~~iKIP~T~---~gl~ai~~L~~~g----i~v~~T~V~s~~Qa~~Aa~AGA~y-vsP~vg 131 (211)
T cd00956 60 STDAEGMVAEARKLASLGGNVVVKIPVTE---DGLKAIKKLSEEG----IKTNVTAIFSAAQALLAAKAGATY-VSPFVG 131 (211)
T ss_pred eCCHHHHHHHHHHHHHhCCCEEEEEcCcH---hHHHHHHHHHHcC----CceeeEEecCHHHHHHHHHcCCCE-EEEecC
Confidence 45789999999888776 55666665431 3344455555443 333344468889987776655444 2211
Q ss_pred eeecCCCCCCHHHHHHhHHHhhcccCCe---EEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 264 LFEQPVHRDDWEGLGHVSHIAKDKFGVS---VAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 264 ~iEeP~~~~d~~~~~~l~~~~~~~~~ip---Ia~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++-- .+-++-.+++.+..+ +.+++ +++ |+.++.++.++...| +|++-+
T Consensus 132 R~~~~g-~dg~~~i~~i~~~~~-~~~~~tkil~A--s~r~~~ei~~a~~~G-ad~vTv 184 (211)
T cd00956 132 RIDDLG-GDGMELIREIRTIFD-NYGFDTKILAA--SIRNPQHVIEAALAG-ADAITL 184 (211)
T ss_pred hHhhcC-CCHHHHHHHHHHHHH-HcCCCceEEec--ccCCHHHHHHHHHcC-CCEEEe
Confidence 222211 111232334333322 34555 443 788999999888877 677644
No 300
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=56.26 E-value=2.1e+02 Score=28.25 Aligned_cols=96 Identities=17% Similarity=0.308 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh----CC--CcEEE-E----e----CCCCCC-HHHHHHHHHHHH-
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV----HP--DSSFI-L----D----ANEGYK-PQEAVEVLEKLY- 256 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~----~~--~~~l~-v----D----aN~~~~-~~~A~~~~~~l~- 256 (412)
+.+.+..+.||+.+=+.-. -++++.++.-+.+.+. += +.+|- + | ....|| +++|.+|+++..
T Consensus 99 e~i~~ai~~GftSVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~Tgv 178 (321)
T PRK07084 99 ELCKDCIDSGFSSVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGV 178 (321)
T ss_pred HHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCC
Confidence 3456677889999999876 4567777766666542 10 11111 0 1 122264 999999998742
Q ss_pred ---------cCCCCCceeecC---CCCCCHHHHHHhHHHhhccc-CCeEEeCCC
Q 015161 257 ---------EMGVTPVLFEQP---VHRDDWEGLGHVSHIAKDKF-GVSVAADES 297 (412)
Q Consensus 257 ---------~~~l~~~~iEeP---~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs 297 (412)
-.|. |-..| -+.-|++-++++++ .+ ++|+.+.=.
T Consensus 179 D~LAvaiGt~HG~---Y~~~~~~~~p~Ld~d~L~~I~~----~~~~vPLVLHGg 225 (321)
T PRK07084 179 DSLAISIGTSHGA---YKFKPGQCPPPLRFDILEEIEK----RIPGFPIVLHGS 225 (321)
T ss_pred CEEeecccccccc---ccCCCCCCCCccCHHHHHHHHH----hcCCCCEEEeCC
Confidence 1343 44422 13467888888875 45 699977543
No 301
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=56.01 E-value=64 Score=31.21 Aligned_cols=57 Identities=23% Similarity=0.369 Sum_probs=47.7
Q ss_pred cccCCeEEeCC-CCCCHHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRSLDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||++.- ...+.+++.+.++.| ..-+.+|.+..- +.-++++.++|++.|+.+-
T Consensus 72 ~~~~vPV~lHlDHg~~~~~~~~ai~~G-FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVE 133 (286)
T COG0191 72 EKYGVPVALHLDHGASFEDCKQAIRAG-FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVE 133 (286)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHhcC-CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 36789999975 455899999999987 778899998875 5568999999999999884
No 302
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=55.84 E-value=1.3e+02 Score=29.19 Aligned_cols=110 Identities=19% Similarity=0.282 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-CCcE----E--------EEeC----CCCCC-HHHHHHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDSS----F--------ILDA----NEGYK-PQEAVEVLEK 254 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~~----l--------~vDa----N~~~~-~~~A~~~~~~ 254 (412)
+.+.+..+.||+.+=+.-. .++++.++.-+.+.+. . -++. | .++. ...|| |++|.+|+++
T Consensus 87 e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~ 166 (287)
T PF01116_consen 87 EDIKRAIDAGFTSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEE 166 (287)
T ss_dssp HHHHHHHHHTSSEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHH
Confidence 4455666779999998877 4566777665555441 1 1111 1 1122 23454 9999999987
Q ss_pred HHc----------CCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeC-CCCCCHHHHHHHHHcC
Q 015161 255 LYE----------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAAD-ESCRSLDDVKKIVKGN 311 (412)
Q Consensus 255 l~~----------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~d-Es~~~~~~~~~~i~~~ 311 (412)
..- .|. |=.---|.-|++-++++++ .. ++|+.+. =|-...++++++++.|
T Consensus 167 TgvD~LAvaiGt~HG~---y~~~~~p~Ld~~~L~~I~~----~~~~iPLVlHGgSG~~~e~~~~ai~~G 228 (287)
T PF01116_consen 167 TGVDALAVAIGTAHGM---YKGGKKPKLDFDRLKEIRE----AVPDIPLVLHGGSGLPDEQIRKAIKNG 228 (287)
T ss_dssp HTTSEEEE-SSSBSSS---BSSSSSTC--HHHHHHHHH----HHHTSEEEESSCTTS-HHHHHHHHHTT
T ss_pred hCCCEEEEecCccccc---cCCCCCcccCHHHHHHHHH----hcCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 641 332 3330123457888888875 56 8999874 5666677899999887
No 303
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=55.78 E-value=2.4e+02 Score=28.81 Aligned_cols=123 Identities=15% Similarity=0.153 Sum_probs=71.4
Q ss_pred HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCC--cEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCC
Q 015161 193 AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPD--SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPV 269 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~--~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~ 269 (412)
+...+++..+.|...|++-=. .|++.-...++++++.|.. ..+..+..-.-|.+..++++++|.+.++....|-+--
T Consensus 100 Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDma 179 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMA 179 (472)
T ss_pred HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence 455677788889988886422 3333333346666665543 4566676667788888899999988887533444432
Q ss_pred CCCCHHHHHHhHHHhhcccCCeEEeCCCCCC-HH--HHHHHHHcCCCCEE
Q 015161 270 HRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LD--DVKKIVKGNLADVI 316 (412)
Q Consensus 270 ~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~--~~~~~i~~~a~d~v 316 (412)
---.....-+|.+.+++.+++||-..-.+++ .. ....++++| +|++
T Consensus 180 GlltP~~ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAG-vD~i 228 (472)
T COG5016 180 GLLTPYEAYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAG-VDGI 228 (472)
T ss_pred ccCChHHHHHHHHHHHHhcCCeeEEecccccchHHHHHHHHHHhC-cchh
Confidence 2111222223333445577888877655443 22 234455555 5654
No 304
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=55.68 E-value=2e+02 Score=28.07 Aligned_cols=160 Identities=16% Similarity=0.113 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC--CCh-----hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH--HcCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG--KNL-----KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL--YEMG 259 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG--~~~-----~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l--~~~~ 259 (412)
++++..+.++.+.+.|++.+=+--+ .++ +.=.+.+++|++..|++.+.+=........++++.+... +-++
T Consensus 92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~ 171 (302)
T TIGR00510 92 DPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYN 171 (302)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhc
Confidence 5788888999999999999865533 122 122456788887778777766332111123333333221 1111
Q ss_pred CC----CceeecCCCCCCHHHHHHhHHHhhc-------ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe----cCCC--
Q 015161 260 VT----PVLFEQPVHRDDWEGLGHVSHIAKD-------KFGVSVAADESCRSLDDVKKIVKGNLADVINI----KLAK-- 322 (412)
Q Consensus 260 l~----~~~iEeP~~~~d~~~~~~l~~~~~~-------~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i----k~~~-- 322 (412)
.. +..+..=-+..+++..-++-+.+++ .+++=|..||+.....+..+.++.-.+|.+.+ -|++
T Consensus 172 hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqYl~p~~~~ 251 (302)
T TIGR00510 172 HNLETVERLTPFVRPGATYRWSLKLLERAKEYLPNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQYLRPSRRH 251 (302)
T ss_pred ccccchHHHHHHhCCCCCHHHHHHHHHHHHHhCCCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecccCCCCCC
Confidence 10 0111221223344433332222222 35556667888777776666666655676642 1222
Q ss_pred --Cc----HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 323 --VG----VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 323 --~G----it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+- ..+.-....+|.+.|...+.++.+
T Consensus 252 ~~v~~~~~p~~f~~~~~~a~~~gf~~v~~~p~ 283 (302)
T TIGR00510 252 LPVKRYVSPEEFDYYRSVALEMGFLHAACGPF 283 (302)
T ss_pred CccccCCCHHHHHHHHHHHHHcCChheEeccc
Confidence 11 223455677888888887776643
No 305
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=55.34 E-value=2.3e+02 Score=28.48 Aligned_cols=161 Identities=17% Similarity=0.218 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP 268 (412)
+.++-.+.++.+.+.|+..+-+-+-..-+.|.+.++.+.+.+.+..+..- .+...++ ++...+.++. ++-=-
T Consensus 24 s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~--~r~~~~d----i~~a~~~g~~--~i~i~ 95 (378)
T PRK11858 24 TNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILAL--NRAVKSD----IDASIDCGVD--AVHIF 95 (378)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEE--cccCHHH----HHHHHhCCcC--EEEEE
Confidence 56777788888888999998864433335667888888876555555543 2222333 2333344543 33333
Q ss_pred CCCCCH--------------HHHHHhHHHhhcccCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEecCCCCc-H-
Q 015161 269 VHRDDW--------------EGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG-V- 325 (412)
Q Consensus 269 ~~~~d~--------------~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~d~v~ik~~~~G-i- 325 (412)
++..|. +...+..+..+ ..+..|.. |.+-.++..+.+++ +.| ++.+.+.=+ +| .
T Consensus 96 ~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~-~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~I~l~DT-~G~~~ 172 (378)
T PRK11858 96 IATSDIHIKHKLKKTREEVLERMVEAVEYAK-DHGLYVSFSAEDASRTDLDFLIEFAKAAEEAG-ADRVRFCDT-VGILD 172 (378)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH-HCCCeEEEEeccCCCCCHHHHHHHHHHHHhCC-CCEEEEecc-CCCCC
Confidence 333332 32333332222 23444432 44556666555444 345 455554433 25 3
Q ss_pred -HHHHHHHHHH-HHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 326 -LGALEIIEVV-RASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 326 -t~~l~i~~~A-~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
.+..+++... +..++++.+|+....++ +.+-.++|
T Consensus 173 P~~v~~lv~~l~~~~~~~l~~H~Hnd~Gl--A~AN~laA 209 (378)
T PRK11858 173 PFTMYELVKELVEAVDIPIEVHCHNDFGM--ATANALAG 209 (378)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCCcCH--HHHHHHHH
Confidence 3455555544 44588888888644444 44444444
No 306
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=55.20 E-value=2.3e+02 Score=28.33 Aligned_cols=112 Identities=13% Similarity=0.219 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHh----CC--CcEEE----E--------eC---------
Q 015161 195 ELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV----HP--DSSFI----L--------DA--------- 239 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~----~~--~~~l~----v--------Da--------- 239 (412)
+.+.+..+.||+.+=+.-.. ++++.++.-+.+.+. += +..|- . |.
T Consensus 87 e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~ 166 (347)
T TIGR01521 87 ATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDH 166 (347)
T ss_pred HHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccch
Confidence 34566678899999988763 677888776666552 10 11111 0 21
Q ss_pred CCCCC-HHHHHHHHHHHH----------cCCCCCceee--cCC-CCCCHHHHHHhHHHhhccc-CCeEEeCC-CCCC---
Q 015161 240 NEGYK-PQEAVEVLEKLY----------EMGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADE-SCRS--- 300 (412)
Q Consensus 240 N~~~~-~~~A~~~~~~l~----------~~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~dE-s~~~--- 300 (412)
...|| +++|.+|+++.. -.|+ |-. +|- +.-|++-++++++ .+ ++|+.+.= |=..
T Consensus 167 ~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~Ld~~rL~eI~~----~v~~vPLVLHGgSG~p~~~ 239 (347)
T TIGR01521 167 SQLLTDPEEAADFVKKTKVDALAVAIGTSHGA---YKFTRKPTGEVLAIQRIEEIHA----RLPDTHLVMHGSSSVPQEW 239 (347)
T ss_pred hhcCCCHHHHHHHHHHHCcCEEehhcccccCC---cCCCCCCChhhcCHHHHHHHHc----cCCCCCEEEeCCCCCchHh
Confidence 12264 999999998753 1343 433 352 1246777887764 56 69987744 4322
Q ss_pred ------------------HHHHHHHHHcCCC
Q 015161 301 ------------------LDDVKKIVKGNLA 313 (412)
Q Consensus 301 ------------------~~~~~~~i~~~a~ 313 (412)
.++++++++.|.+
T Consensus 240 ~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~ 270 (347)
T TIGR01521 240 LDIINEYGGEIKETYGVPVEEIVEGIKYGVR 270 (347)
T ss_pred hHHHHhhcccccccCCCCHHHHHHHHHCCCe
Confidence 4678888877643
No 307
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=55.06 E-value=1.2e+02 Score=30.23 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=41.0
Q ss_pred cccCCeEEeCC-CCCC-------------HHHHHHHHHcCCCCEEEecCCCCc----HHHHHHHHHHHHHcCCcEE
Q 015161 286 DKFGVSVAADE-SCRS-------------LDDVKKIVKGNLADVINIKLAKVG----VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 286 ~~~~ipIa~dE-s~~~-------------~~~~~~~i~~~a~d~v~ik~~~~G----it~~l~i~~~A~~~gi~~~ 343 (412)
++.++||++.- ...+ .+.+++.++.| ++-+++|.+..= +..++++.++|+++|+.+-
T Consensus 84 ~~~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~G-ftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVE 158 (345)
T cd00946 84 EHYGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPL-FSSHMLDLSEEPLEENIEICKKYLERMAKINMWLE 158 (345)
T ss_pred HHCCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCC-CceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 46689998864 4445 33333344444 788899988864 6678999999999999874
No 308
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=54.87 E-value=2.4e+02 Score=28.44 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC---C-cHHHHHHH-HHHHHH--cCCcEEE
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK---V-GVLGALEI-IEVVRA--SGLNLMI 344 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~---~-Git~~l~i-~~~A~~--~gi~~~~ 344 (412)
-+|+.+++|++ .+++||..-|-. +.+|++++++.| +|.|.+.-.- . +...++.+ .+.+++ ..++++.
T Consensus 211 ~tW~di~wlr~----~~~~PiivKgV~-~~~dA~~a~~~G-vd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~ 284 (367)
T PLN02493 211 LSWKDVQWLQT----ITKLPILVKGVL-TGEDARIAIQAG-AAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFL 284 (367)
T ss_pred CCHHHHHHHHh----ccCCCEEeecCC-CHHHHHHHHHcC-CCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEE
Confidence 46788888864 688999999884 799999999988 7887655321 1 11122333 333344 3488888
Q ss_pred ccCcchHHHHHHHHHH
Q 015161 345 GGMVETRLAMGFAGHL 360 (412)
Q Consensus 345 ~~~~es~i~~~a~~hl 360 (412)
.+-+.++.-..-++-|
T Consensus 285 dGGIr~G~Dv~KALAL 300 (367)
T PLN02493 285 DGGVRRGTDVFKALAL 300 (367)
T ss_pred eCCcCcHHHHHHHHHc
Confidence 7766555444444433
No 309
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=53.95 E-value=82 Score=28.76 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=70.0
Q ss_pred CcEEEEeCCCC------C-CHHHHHHHHHHHHcCCCCCcee---ecC-CCCCCHHHHHHhHHHhhcccCCeEEeCCCCCC
Q 015161 232 DSSFILDANEG------Y-KPQEAVEVLEKLYEMGVTPVLF---EQP-VHRDDWEGLGHVSHIAKDKFGVSVAADESCRS 300 (412)
Q Consensus 232 ~~~l~vDaN~~------~-~~~~A~~~~~~l~~~~l~~~~i---EeP-~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~ 300 (412)
++.+..+.+.+ + +..+..++++..++.|.. |+ -++ .....++.++.+++ ..++||...--+.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~--~l~v~~~~~~~~g~~~~~~~i~~----~v~iPi~~~~~i~~ 83 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAA--AISVLTEPKYFQGSLEDLRAVRE----AVSLPVLRKDFIID 83 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCC--EEEEEeCccccCCCHHHHHHHHH----hcCCCEEECCeecC
Confidence 46666666652 1 234466778888877753 44 111 11234555666653 46899998777777
Q ss_pred HHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015161 301 LDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 301 ~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~ 346 (412)
..++..+.+.| +|.+.+...-.......++...+...|+.+++..
T Consensus 84 ~~~v~~~~~~G-ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 84 PYQIYEARAAG-ADAVLLIVAALDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHHHcC-CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 77888888887 6888765444444556778888899999986543
No 310
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=53.69 E-value=2e+02 Score=27.25 Aligned_cols=175 Identities=17% Similarity=0.142 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEE--eCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL--DANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~v--DaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
+.++..+.++.+.+.|+..+-+-....-+.|.+.++.+++..++..+.. ++| .+...+.++.....++....+-
T Consensus 18 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~----~~~v~~a~~~~~~~~~~~i~i~ 93 (268)
T cd07940 18 TPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAV----KKDIDAAAEALKPAKVDRIHTF 93 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCC----HhhHHHHHHhCCCCCCCEEEEE
Confidence 5677788888899999999987543212467889999988766666543 333 2221111222211113322333
Q ss_pred cCCCC------------CCHHHHHHhHHHhhcccCCeEEe---CCCCCCHHHHHH----HHHcCCCCEEEecCCC-Cc-H
Q 015161 267 QPVHR------------DDWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKK----IVKGNLADVINIKLAK-VG-V 325 (412)
Q Consensus 267 eP~~~------------~d~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~----~i~~~a~d~v~ik~~~-~G-i 325 (412)
-|+++ +.++...+..+..++ .+..|.. +.+-.+++.+.. +.+.| +|.+.++=+- .. .
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P 171 (268)
T cd07940 94 IATSDIHLKYKLKKTREEVLERAVEAVEYAKS-HGLDVEFSAEDATRTDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTP 171 (268)
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEeeecCCCCCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCH
Confidence 34431 123333333333232 3455543 344456665443 34455 5665555432 22 4
Q ss_pred HHHHHHHHHHHH-cC---CcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 326 LGALEIIEVVRA-SG---LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 326 t~~l~i~~~A~~-~g---i~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
.+..++....++ ++ +++.+|+... .|++.+-.++|.-..+.++|
T Consensus 172 ~~v~~lv~~l~~~~~~~~i~l~~H~Hn~--~GlA~An~laAi~aG~~~iD 219 (268)
T cd07940 172 EEFGELIKKLKENVPNIKVPISVHCHND--LGLAVANSLAAVEAGARQVE 219 (268)
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEecCC--cchHHHHHHHHHHhCCCEEE
Confidence 456666666555 34 7888887543 34444444444333345554
No 311
>PRK08508 biotin synthase; Provisional
Probab=53.62 E-value=2.1e+02 Score=27.41 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=77.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEe-cCC-----ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLK-VGK-----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGV 260 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiK-vG~-----~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l 260 (412)
.+++++.+.++++.++|.+.|=+- -|. .++.=.+.++.+++.+|++.+.. .++..+.+++.++.+. ++.++.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~-s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIA-CNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEe-cCCCCCHHHHHHHHHcCCCEEcc
Confidence 588999999999889999888773 222 22233455677777777766432 5666666655444333 443332
Q ss_pred CCc----eeecCCCCCCHHHHHHhHHHhhc-----ccCCeEEeCCCCCCHHHHHHHHHcCCCCEE-----EecCC-----
Q 015161 261 TPV----LFEQPVHRDDWEGLGHVSHIAKD-----KFGVSVAADESCRSLDDVKKIVKGNLADVI-----NIKLA----- 321 (412)
Q Consensus 261 ~~~----~iEeP~~~~d~~~~~~l~~~~~~-----~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v-----~ik~~----- 321 (412)
.+. ++..=++..+|+..-+..+.+++ .+++-+..+|+.....+....+..-..+.+ .+.+.
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~ 198 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKA 198 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCC
Confidence 111 12222333445442222111121 223344567776665555444443334422 22221
Q ss_pred -CCcHHHHHHHHHHHHHc
Q 015161 322 -KVGVLGALEIIEVVRAS 338 (412)
Q Consensus 322 -~~Git~~l~i~~~A~~~ 338 (412)
.....+.++++++++-.
T Consensus 199 ~~~~~~~~lr~iAv~Rl~ 216 (279)
T PRK08508 199 PTLSADEALEIVRLAKEA 216 (279)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 11245678888888754
No 312
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=53.23 E-value=3.2e+02 Score=29.45 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCc--EEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDS--SFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~--~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.++...+.|...|.+-.. .+++.-...++.+++.|-.+ .+..=.....+.+...++++.+.+.|.....|=+..---
T Consensus 102 ~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l 181 (593)
T PRK14040 102 FVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL 181 (593)
T ss_pred HHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 344455566666555433 22322223345555544321 122111224455666666666666665544556655544
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEEecCCCC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVINIKLAKV 323 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ik~~~~ 323 (412)
......+|.+.+++..++||...=+.. .......++++| +|++..-++-+
T Consensus 182 ~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAG-a~~vD~ai~gl 234 (593)
T PRK14040 182 KPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAG-IDGVDTAISSM 234 (593)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcC-CCEEEeccccc
Confidence 455555555455555556664432211 122334455555 56554444333
No 313
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=53.14 E-value=2e+02 Score=27.34 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC-Ch-h-HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK-NL-K-EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~-~-~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
+++.+.+. +.+.|-..+-+-+-+ +. + ..-..+..++. .++.++--.++.+|.+||++.++.-.+..- ..||
T Consensus 21 s~~~~~~a---i~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~i 94 (248)
T cd04728 21 SPAIMKEA---IEASGAEIVTVALRRVNIGDPGGESFLDLLDK--SGYTLLPNTAGCRTAEEAVRTARLAREALG-TDWI 94 (248)
T ss_pred CHHHHHHH---HHHhCCCEEEEEEEecccCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeE
Confidence 55554443 345677777665541 11 1 11122222321 256777778899999999998887766532 1365
Q ss_pred ecCC-------CCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--cCCCC--cHHHHHHHHH
Q 015161 266 EQPV-------HRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAKV--GVLGALEIIE 333 (412)
Q Consensus 266 EeP~-------~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i--k~~~~--Git~~l~i~~ 333 (412)
-==+ -+|..+.+..-....++ -..+|++.| ++...+++.+.| ++.+.+ .+--. |+...--+..
T Consensus 95 KlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d----d~~~ar~l~~~G-~~~vmPlg~pIGsg~Gi~~~~~I~~ 169 (248)
T cd04728 95 KLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD----DPVLAKRLEDAG-CAAVMPLGSPIGSGQGLLNPYNLRI 169 (248)
T ss_pred EEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC----CHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHH
Confidence 3222 22322323222111111 223577765 566677777775 788876 32222 3432222234
Q ss_pred HHHHcCCcEEEccCcchHH
Q 015161 334 VVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 334 ~A~~~gi~~~~~~~~es~i 352 (412)
+.+..+++++..+-+.++-
T Consensus 170 I~e~~~vpVI~egGI~tpe 188 (248)
T cd04728 170 IIERADVPVIVDAGIGTPS 188 (248)
T ss_pred HHHhCCCcEEEeCCCCCHH
Confidence 4555789998877665553
No 314
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=52.90 E-value=2e+02 Score=27.02 Aligned_cols=116 Identities=16% Similarity=0.023 Sum_probs=72.6
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEeCC--C--------CCCH--HHHHHHHHHHHcCCCC
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILDAN--E--------GYKP--QEAVEVLEKLYEMGVT 261 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vDaN--~--------~~~~--~~A~~~~~~l~~~~l~ 261 (412)
+.++++.+.|... +=+|.-.-+|.+.++.+.+.+ ..+-+.+|+. + +|+. ....+++++++++++.
T Consensus 87 e~~~~~l~~Ga~~--vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~ 164 (243)
T TIGR01919 87 SSLRAALTGGRAR--VNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCS 164 (243)
T ss_pred HHHHHHHHcCCCE--EEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCC
Confidence 4455667778764 455632234666777777764 4577888974 2 3532 2456788888888764
Q ss_pred CceeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEE
Q 015161 262 PVLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVIN 317 (412)
Q Consensus 262 ~~~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~ 317 (412)
.++=--+.. -|++.++++++ .+++||.+.=-+.+.+|+.++-+. ..++.+.
T Consensus 165 -~ii~tdI~~dGt~~G~d~~l~~~l~~----~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvi 223 (243)
T TIGR01919 165 -RVVVTDSKKDGLSGGPNELLLEVVAA----RTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAI 223 (243)
T ss_pred -EEEEEecCCcccCCCcCHHHHHHHHh----hCCCCEEEECCcCCHHHHHHHHhhccCCeeEEE
Confidence 344333332 35777777764 568999888888999999887432 2355443
No 315
>PRK00915 2-isopropylmalate synthase; Validated
Probab=52.84 E-value=2.4e+02 Score=29.71 Aligned_cols=107 Identities=18% Similarity=0.250 Sum_probs=67.6
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeec--CC-CCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
|.+| .|+.++-+++++.|.+.|+. +||= |. ++.|++..+++.+. ..+..|++==. ....++...++.
T Consensus 14 DG~Q~~g~~~s~e~K~~ia~~L~~~Gv~--~IE~G~p~~s~~d~~~v~~i~~~---~~~~~i~a~~r-~~~~did~a~~a 87 (513)
T PRK00915 14 DGEQSPGASLTVEEKLQIAKQLERLGVD--VIEAGFPASSPGDFEAVKRIART---VKNSTVCGLAR-AVKKDIDAAAEA 87 (513)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCCCChHHHHHHHHHHhh---CCCCEEEEEcc-CCHHHHHHHHHH
Confidence 5565 47899999999999999986 9998 43 35677777777542 23455543212 336677776632
Q ss_pred ---CCCCEEEecCC--------CCc------HHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 311 ---NLADVINIKLA--------KVG------VLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 311 ---~a~d~v~ik~~--------~~G------it~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
...+.+.+=.. +.| +..+.+.+++|+++|..+.++++..+
T Consensus 88 ~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~ 144 (513)
T PRK00915 88 LKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDAT 144 (513)
T ss_pred hhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 12333332211 111 22355789999999999998886433
No 316
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=52.72 E-value=1e+02 Score=29.67 Aligned_cols=100 Identities=21% Similarity=0.248 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHH-HcCCCCCceeec--C-CCCCCHHHHHHhHHHhhc--c-cCCeEE-eCCCCCCHHHHHHHHHcCCC
Q 015161 242 GYKPQEAVEVLEKL-YEMGVTPVLFEQ--P-VHRDDWEGLGHVSHIAKD--K-FGVSVA-ADESCRSLDDVKKIVKGNLA 313 (412)
Q Consensus 242 ~~~~~~A~~~~~~l-~~~~l~~~~iEe--P-~~~~d~~~~~~l~~~~~~--~-~~ipIa-~dEs~~~~~~~~~~i~~~a~ 313 (412)
.++.++=+++++.| ++.|+. .||= | .++++++..+++.+.... . .++.+. . +.+..++.++.+.+ +
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~--~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~A~~~g-~ 88 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVD--RIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGF---VDGDKSVDWIKSAG-A 88 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCC--EEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEe---cCcHHHHHHHHHCC-C
Confidence 47889999999996 888985 9998 6 566666777766542100 0 023332 2 23456788877765 4
Q ss_pred CEEEecC-----------CCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 314 DVINIKL-----------AKV--G-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 314 d~v~ik~-----------~~~--G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+.+++=. .+. - +....+++.+|+++|+.+..+-+
T Consensus 89 ~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~ 136 (280)
T cd07945 89 KVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE 136 (280)
T ss_pred CEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 5554432 111 2 44567789999999998876554
No 317
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=52.20 E-value=1.9e+02 Score=28.94 Aligned_cols=124 Identities=14% Similarity=0.174 Sum_probs=78.7
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHcCCCC-------C--ceeecCCCCCCH----------------HHHHHhHHHh--
Q 015161 232 DSSFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPVHRDDW----------------EGLGHVSHIA-- 284 (412)
Q Consensus 232 ~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~-------~--~~iEeP~~~~d~----------------~~~~~l~~~~-- 284 (412)
..-+++=...--+++++++++++|.+.+-. + .++|-|--...| +|++.+++.+
T Consensus 53 rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~~GL~~~R~ll~~ 132 (349)
T PRK09261 53 RLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDINDGLRIARKLLLD 132 (349)
T ss_pred CeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHHHHHHHHHHHHHH
Confidence 344555555666788899988888654310 0 277877554334 3444444332
Q ss_pred hcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHH
Q 015161 285 KDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 285 ~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hla 361 (412)
...+++|++..=.-.. ++-+.+ .+|+. .+| -++.....++|...+.++.+-......+..+..+-.|
T Consensus 133 ~~e~GlpvatE~ld~~~~~y~~d-----lvs~~-----~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~a 202 (349)
T PRK09261 133 INELGLPAATEFLDPITPQYIAD-----LISWG-----AIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAIDAIIA 202 (349)
T ss_pred HHHhCCCeEEEecccccHHHHHh-----hccee-----eeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHhHHHH
Confidence 2467999987543222 222222 24555 347 5677888999999999999988777788777777777
Q ss_pred ccCC
Q 015161 362 AGLG 365 (412)
Q Consensus 362 aa~~ 365 (412)
++.|
T Consensus 203 a~~~ 206 (349)
T PRK09261 203 ASAP 206 (349)
T ss_pred HhCC
Confidence 6655
No 318
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=52.00 E-value=2.2e+02 Score=27.23 Aligned_cols=122 Identities=16% Similarity=0.104 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCEEeEecC--CChhHHHHHHHHHHHhC-C-CcEEEEeCC---C-------CCCH---HHHHHHHHHHHc
Q 015161 195 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVH-P-DSSFILDAN---E-------GYKP---QEAVEVLEKLYE 257 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG--~~~~~D~~~v~avr~~~-~-~~~l~vDaN---~-------~~~~---~~A~~~~~~l~~ 257 (412)
+.++++.+.|...+=+--- .+.+-|.+.++.+-+.+ + .+.+.+|+. + +|.. -++.+++.++.+
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~ 174 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLA 174 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHH
Confidence 5567788889876655321 12122378888888874 5 467789985 3 3422 234555555555
Q ss_pred CCCCCceeec------CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC--CCCEEEecCC
Q 015161 258 MGVTPVLFEQ------PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--LADVINIKLA 321 (412)
Q Consensus 258 ~~l~~~~iEe------P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a~d~v~ik~~ 321 (412)
.++. .++=. -+.--|++.++++++ .+.+||.+.=-+.+++|+.++.+.+ ...++.=|.-
T Consensus 175 ~g~~-eii~TdI~rDGtl~G~d~el~~~l~~----~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl 241 (262)
T PLN02446 175 AYCD-EFLVHGVDVEGKRLGIDEELVALLGE----HSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL 241 (262)
T ss_pred hCCC-EEEEEEEcCCCcccCCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence 4442 22211 233346777888874 5789998888899999999998864 3444444443
No 319
>PRK15063 isocitrate lyase; Provisional
Probab=51.85 E-value=2.5e+02 Score=28.85 Aligned_cols=96 Identities=18% Similarity=0.082 Sum_probs=65.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeE--------ecC-------CChhHHHHHHHHHHHh----CCCcEE--EEeCCCC--
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKL--------KVG-------KNLKEDIEVLRAIRAV----HPDSSF--ILDANEG-- 242 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~Ki--------KvG-------~~~~~D~~~v~avr~~----~~~~~l--~vDaN~~-- 242 (412)
|...+..+.+.++.+.+.|.-.+-| |+| .+.++-+++|+++|.+ +.++-| |-|+..+
T Consensus 156 GfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~l 235 (428)
T PRK15063 156 GFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADL 235 (428)
T ss_pred CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccc
Confidence 3445666788889999999877765 244 2456778899998874 334322 5688653
Q ss_pred --------------------------CCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHh
Q 015161 243 --------------------------YKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA 284 (412)
Q Consensus 243 --------------------------~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~ 284 (412)
-..++|++.+....+ +-...|+|-..+ |.+..+++.+.+
T Consensus 236 i~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~--d~ee~~~fa~~v 300 (428)
T PRK15063 236 LTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTP--DLEEARRFAEAI 300 (428)
T ss_pred ccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCC--CHHHHHHHHHhh
Confidence 247899999999888 555579996443 466677776543
No 320
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=51.84 E-value=2.6e+02 Score=27.97 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEeEecC----CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 194 AELASKYRKQGFTTLKLKVG----KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG----~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
.+.++.+++.|+. +-+-+- .+++.=.+.++++.+.+.+.--..|..+..+|++..++++.+.+
T Consensus 115 ~~~i~~ak~~G~~-v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 115 VEAVEYAKEHGLI-VEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred HHHHHHHHHcCCE-EEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhc
Confidence 4445556667763 222221 22333344455555667776667799999999988888888765
No 321
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=51.79 E-value=2.6e+02 Score=28.01 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=69.7
Q ss_pred CCCEEeEecC-CChhHHHHHHHHHHHh-C-CCc----EE--------EEeC-----CCCC-CHHHHHHHHHHHH------
Q 015161 204 GFTTLKLKVG-KNLKEDIEVLRAIRAV-H-PDS----SF--------ILDA-----NEGY-KPQEAVEVLEKLY------ 256 (412)
Q Consensus 204 Gf~~~KiKvG-~~~~~D~~~v~avr~~-~-~~~----~l--------~vDa-----N~~~-~~~~A~~~~~~l~------ 256 (412)
||+.+=+.-. .++++.++..+.+.+. . -++ +| -++. +..| ++++|.+|.++..
T Consensus 135 gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD 214 (357)
T TIGR01520 135 LFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNF 214 (357)
T ss_pred CCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcc
Confidence 3999998876 4677888776666542 1 111 11 1111 1336 4999999998761
Q ss_pred --------cCCCCCcee-ecCCCCCCHHHHHHhHHHhhcccCCe-------EEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 257 --------EMGVTPVLF-EQPVHRDDWEGLGHVSHIAKDKFGVS-------VAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 257 --------~~~l~~~~i-EeP~~~~d~~~~~~l~~~~~~~~~ip-------Ia~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
-.|+ |- +.| .-|++-++++++.+++.+++| |..|=|=...++++++++.|.+ =+|+.
T Consensus 215 ~LAvAiGT~HG~---Yk~~~p--~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai~~GI~-KINi~ 287 (357)
T TIGR01520 215 SIAAAFGNVHGV---YKPGNV--KLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEALSYGVV-KMNID 287 (357)
T ss_pred eeeeeeccccCC---cCCCCC--ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHHHCCCe-EEEeC
Confidence 1333 42 443 467888898864433467888 5567787888999999998844 34554
No 322
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=49.78 E-value=2.9e+02 Score=29.34 Aligned_cols=105 Identities=12% Similarity=0.250 Sum_probs=64.3
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeec--CC-CCCCHHHHHHhHHHhhcccCCeEEeC-----CCC--CCHHH
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQ--PV-HRDDWEGLGHVSHIAKDKFGVSVAAD-----ESC--RSLDD 303 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEe--P~-~~~d~~~~~~l~~~~~~~~~ipIa~d-----Es~--~~~~~ 303 (412)
|.+| .++.++-+++++.|.+.|+. +||= |. ++.|++.++++.+. ......|+.= +.+ .....
T Consensus 11 DG~Q~~g~~~s~eeKl~Ia~~L~~~GVd--~IE~G~p~~s~~d~~~v~~i~~~--~~~~~~i~~~~r~~r~~~~~~~d~~ 86 (526)
T TIGR00977 11 DGAQREGVSFSLEDKIRIAERLDDLGIH--YIEGGWPGANPKDVQFFWQLKEM--NFKNAKIVAFCSTRRPHKKVEEDKM 86 (526)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCChHHHHHHHHHHHh--CCCCcEEEEEeeecCCCCCCchHHH
Confidence 5565 47899999999999999986 9998 43 35667777776531 1112444331 111 12334
Q ss_pred HHHHHHcCCCCEEEe-----------cCCCC--c-HHHHHHHHHHHHHcCCcEEEccC
Q 015161 304 VKKIVKGNLADVINI-----------KLAKV--G-VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 304 ~~~~i~~~a~d~v~i-----------k~~~~--G-it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+..+++.+ .+.+.+ +..+. - +..+.+.+.+|+.+|..+..+.+
T Consensus 87 ~ea~~~~~-~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e 143 (526)
T TIGR00977 87 LQALIKAE-TPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAE 143 (526)
T ss_pred HHHHhcCC-CCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 56666554 444443 22222 1 33456679999999999876443
No 323
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=49.59 E-value=1.8e+02 Score=27.70 Aligned_cols=99 Identities=21% Similarity=0.304 Sum_probs=58.1
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCceeec------C----CCC-CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ------P----VHR-DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 238 DaN~~~~~~~A~~~~~~l~~~~l~~~~iEe------P----~~~-~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
|.....+.+++++.+.++.+.|.. +|.= | +++ ++++.+..+-+.++...++||+.|= ++++-++.
T Consensus 16 dg~~~~~~~~~~~~a~~~~~~GAd--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT--~~~~v~e~ 91 (257)
T cd00739 16 DGGRFLSLDKAVAHAEKMIAEGAD--IIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDT--FRAEVARA 91 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeC--CCHHHHHH
Confidence 333445677777777777665543 4442 1 111 1222232223334445689999983 45666788
Q ss_pred HHHcCCCCEEE-ecCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015161 307 IVKGNLADVIN-IKLAKVGVLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 307 ~i~~~a~d~v~-ik~~~~Git~~l~i~~~A~~~gi~~~~~ 345 (412)
+++.| ++++| +. |...--+++.+++++|..++.-
T Consensus 92 al~~G-~~iINdis----g~~~~~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 92 ALEAG-ADIINDVS----GGSDDPAMLEVAAEYGAPLVLM 126 (257)
T ss_pred HHHhC-CCEEEeCC----CCCCChHHHHHHHHcCCCEEEE
Confidence 88876 78876 32 3211146678899999998773
No 324
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.49 E-value=2.9e+02 Score=27.73 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCCCCceeec
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 267 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l~~~~iEe 267 (412)
+.+...+++.++.+.|...+.+-+-. .++.+.+..|++..+ +.|..|-+-.|. -|++-++. .+...++
T Consensus 40 Dv~atv~Qi~~L~~aGceiVRvav~~--~~~a~al~~I~~~~~-iPlvADIHFd~~--lAl~a~~~G~~~iRIN------ 108 (360)
T PRK00366 40 DVEATVAQIKRLARAGCEIVRVAVPD--MEAAAALPEIKKQLP-VPLVADIHFDYR--LALAAAEAGADALRIN------ 108 (360)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEccCC--HHHHHhHHHHHHcCC-CCEEEecCCCHH--HHHHHHHhCCCEEEEC------
Confidence 45667888999999999999998854 578888999988764 889999886554 34444444 3333333
Q ss_pred CCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHcCCc
Q 015161 268 PVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRASGLN 341 (412)
Q Consensus 268 P~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~gi~ 341 (412)
|=.-.. .+..+++.+..+ ..++||=.|=+.-+++ +++++.. + +++--+ +..+++-++++++.|..
T Consensus 109 PGNig~~~~~v~~vv~~ak-~~~ipIRIGvN~GSL~--~~~~~~y--g----~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 109 PGNIGKRDERVREVVEAAK-DYGIPIRIGVNAGSLE--KDLLEKY--G----EPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred CCCCCchHHHHHHHHHHHH-HCCCCEEEecCCccCh--HHHHHHc--C----CCCHHHHHHHHHHHHHHHHHCCCC
Confidence 222222 344555544333 4588998887777765 3333321 1 122235 45567777777776654
No 325
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=49.08 E-value=1.9e+02 Score=28.11 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=66.0
Q ss_pred HHHHHHcCCCEEeEecCC--C--------hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 197 ASKYRKQGFTTLKLKVGK--N--------LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~--~--------~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
++-..+.||..+-+-+|. | .-.+.+.|++++++. ++.++.=...++ ..-++.|++.++. +|-
T Consensus 30 a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V-~iPVigk~Righ-----~~Ea~~L~~~GvD--iID 101 (293)
T PRK04180 30 AKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAV-SIPVMAKARIGH-----FVEAQILEALGVD--YID 101 (293)
T ss_pred HHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhC-CCCeEEeehhhH-----HHHHHHHHHcCCC--EEe
Confidence 333445688777765551 1 114566777888864 455554333333 4455667888874 774
Q ss_pred c---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 267 Q---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 267 e---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+ +.|.+ +.+...+ .++++|+..| +.++.+..+.++.| +|++.-+
T Consensus 102 ~Te~lrpad--~~~~~~K----~~f~~~fmad--~~~l~EAlrai~~G-admI~Tt 148 (293)
T PRK04180 102 ESEVLTPAD--EEYHIDK----WDFTVPFVCG--ARNLGEALRRIAEG-AAMIRTK 148 (293)
T ss_pred ccCCCCchH--HHHHHHH----HHcCCCEEcc--CCCHHHHHHHHHCC-CCeeecc
Confidence 3 33322 2233333 3678999997 56889999999988 6898877
No 326
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=48.66 E-value=2.2e+02 Score=28.41 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=77.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHcCCCC-------C--ceeecCC----------------CCCCHHHHHHhHHHhh--
Q 015161 233 SSFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPV----------------HRDDWEGLGHVSHIAK-- 285 (412)
Q Consensus 233 ~~l~vDaN~~~~~~~A~~~~~~l~~~~l~-------~--~~iEeP~----------------~~~d~~~~~~l~~~~~-- 285 (412)
.-+.+-...--++++|++++++|.+..-. + .|+|-|- +.+--+|++..++.+.
T Consensus 53 llvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~GL~~~R~ll~~i 132 (348)
T PRK12756 53 LLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNHGLELARKLLLQI 132 (348)
T ss_pred eEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence 33445555566788999988888654310 0 3788883 1122244444333221
Q ss_pred cccCCeEEeCCCCC-CHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 286 DKFGVSVAADESCR-SLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 286 ~~~~ipIa~dEs~~-~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
..+++|++..-.-. +++-+.+++.=+ .+| .++.....++|...++++.+-......+..+..+-.|+
T Consensus 133 ~~~GlP~atE~ld~~~~qY~~DliSwg----------aIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidAi~aa 202 (348)
T PRK12756 133 NELGLPTATEFLDMVTGQYIADLISWG----------AIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDAIRAA 202 (348)
T ss_pred HHcCCceeehhcccccHHHHHHHHhhh----------hhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHHHHHH
Confidence 35789998753322 222223433211 246 56777788999999999999888888888888888888
Q ss_pred cCCC
Q 015161 363 GLGC 366 (412)
Q Consensus 363 a~~~ 366 (412)
+.|.
T Consensus 203 ~~~H 206 (348)
T PRK12756 203 RASH 206 (348)
T ss_pred hCCC
Confidence 7664
No 327
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=48.57 E-value=2.9e+02 Score=27.60 Aligned_cols=116 Identities=16% Similarity=0.292 Sum_probs=69.6
Q ss_pred HHHHHHHcCCCEEeEecC-C-------ChhHHHHHHHHHHHh----CC--CcEEE-E-----------eC---------C
Q 015161 196 LASKYRKQGFTTLKLKVG-K-------NLKEDIEVLRAIRAV----HP--DSSFI-L-----------DA---------N 240 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG-~-------~~~~D~~~v~avr~~----~~--~~~l~-v-----------Da---------N 240 (412)
.+.+..+.||+.+=+.-. - ++++.++..+.+.+. += +.+|- | |. .
T Consensus 90 ~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~ 169 (347)
T PRK09196 90 TCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHD 169 (347)
T ss_pred HHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchh
Confidence 456677889999998866 2 567788776666552 21 11221 0 11 1
Q ss_pred CCCC-HHHHHHHHHHHH----------cCCCCCceee--cCC-CCCCHHHHHHhHHHhhccc-CCeEEeC-CCCC-----
Q 015161 241 EGYK-PQEAVEVLEKLY----------EMGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAAD-ESCR----- 299 (412)
Q Consensus 241 ~~~~-~~~A~~~~~~l~----------~~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~d-Es~~----- 299 (412)
..|| +++|.+|+++.. -.|. |-. .|- +.-|++-++++++ .+ ++|+.+. =|-.
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~---Yk~~~~p~~~~LdfdrL~eI~~----~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 170 QLLTDPEEAADFVKKTQVDALAIAIGTSHGA---YKFTRKPTGDVLAIDRIKEIHA----RLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred hcCCCHHHHHHHHHHhCcCeEhhhhccccCC---CCCCCCCChhhccHHHHHHHHh----cCCCCCEEEeCCCCCCHHHH
Confidence 2264 999999998763 1343 332 342 1247888888764 56 6998774 4433
Q ss_pred ----------------CHHHHHHHHHcCCCCEEEec
Q 015161 300 ----------------SLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 300 ----------------~~~~~~~~i~~~a~d~v~ik 319 (412)
..++++++++.|.+ =||+.
T Consensus 243 ~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~-KINi~ 277 (347)
T PRK09196 243 DIINEYGGDMPETYGVPVEEIQEGIKHGVR-KVNID 277 (347)
T ss_pred HHHHHhcCCccccCCCCHHHHHHHHHCCCc-eEEeC
Confidence 44677888877643 23443
No 328
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=48.14 E-value=3e+02 Score=27.55 Aligned_cols=157 Identities=22% Similarity=0.255 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQP 268 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP 268 (412)
+.++-.+.++.+.+.|+..+-+-+...-+.|.+.++.+++..++.++..= .+.+.++ ++...+.++....+--|
T Consensus 21 s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~--~r~~~~d----i~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 21 TAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAW--CRARDAD----IEAAARCGVDAVHISIP 94 (365)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEE--cCCCHHH----HHHHHcCCcCEEEEEEc
Confidence 56777788888888999988875443335677889998887665555432 2223333 23333445432344445
Q ss_pred CCC------------CCHHHHHHhHHHhhcccCCeEEe---CCCCCCHHHHHHHH----HcCCCCEEEecCCCCc-H--H
Q 015161 269 VHR------------DDWEGLGHVSHIAKDKFGVSVAA---DESCRSLDDVKKIV----KGNLADVINIKLAKVG-V--L 326 (412)
Q Consensus 269 ~~~------------~d~~~~~~l~~~~~~~~~ipIa~---dEs~~~~~~~~~~i----~~~a~d~v~ik~~~~G-i--t 326 (412)
+++ +.++.+.+..+..+ ..+..+.. |.+-.+++.+.+++ +.| +|.+++.=+ +| . .
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak-~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~G-a~~i~l~DT-~G~~~P~ 171 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFAR-DRGLFVSVGGEDASRADPDFLVELAEVAAEAG-ADRFRFADT-VGILDPF 171 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHH-hCCCEEEEeecCCCCCCHHHHHHHHHHHHHcC-cCEEEEccc-CCCCCHH
Confidence 542 11222222222222 23444432 34445565554433 345 566655433 35 3 3
Q ss_pred HHHHHHHH-HHHcCCcEEEccCcchHHHH
Q 015161 327 GALEIIEV-VRASGLNLMIGGMVETRLAM 354 (412)
Q Consensus 327 ~~l~i~~~-A~~~gi~~~~~~~~es~i~~ 354 (412)
+..+++.. .+..++++.+|+....+++.
T Consensus 172 ~v~~lv~~l~~~~~v~l~~H~HNd~GlA~ 200 (365)
T TIGR02660 172 STYELVRALRQAVDLPLEMHAHNDLGMAT 200 (365)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCCCChHH
Confidence 45555544 44457888888865544443
No 329
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=47.91 E-value=2.2e+02 Score=26.40 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHH--HHHHcC---CCC
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVL--EKLYEM---GVT 261 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~--~~l~~~---~l~ 261 (412)
..+|+... +.+.+.|-..+-+..-.....-.+.++.+++.+ ..+.+..|..++.++...++ ..++.. .++
T Consensus 74 ~~~p~~~i---~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 74 VSNPEKWV---DDFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred CCCHHHHH---HHHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc
Confidence 44666654 445567888888887532211234456666654 67788889888888877665 333211 111
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 262 PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 262 ~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
|-+=.|++.+.-++..+++++. ...+.|..|=. -+.+.+..+.+.| +|++.+
T Consensus 149 pG~~gq~~~~~~~~ki~~~~~~---~~~~~I~VdGG-I~~~ti~~~~~aG-ad~iVv 200 (228)
T PTZ00170 149 PGFGGQSFMHDMMPKVRELRKR---YPHLNIQVDGG-INLETIDIAADAG-ANVIVA 200 (228)
T ss_pred cCCCCcEecHHHHHHHHHHHHh---cccCeEEECCC-CCHHHHHHHHHcC-CCEEEE
Confidence 1233455554444455555431 11244544433 2344566666666 476644
No 330
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=47.91 E-value=2.5e+02 Score=26.54 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=85.9
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCCh----hHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKNL----KEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~~----~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
.+.+..+.+|....++-.++. +-.-+|+.|-.|. -+-++.+++.+.. ..++.++- |+.++ .-++++|+
T Consensus 75 NTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlP-----Y~~dD-~v~arrLe 148 (262)
T COG2022 75 NTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLP-----YTTDD-PVLARRLE 148 (262)
T ss_pred CccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEee-----ccCCC-HHHHHHHH
Confidence 356777888865544444443 4667898875332 1446777777764 44555543 33333 34667888
Q ss_pred cCCCCC-ceeecCCC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHH
Q 015161 257 EMGVTP-VLFEQPVH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEI 331 (412)
Q Consensus 257 ~~~l~~-~~iEeP~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i 331 (412)
+.|..- .=+=-|+- ..+...++-+. ++..+||..|--+.++.|....++.| +|.+.+... +.++..-
T Consensus 149 e~GcaavMPl~aPIGSg~G~~n~~~l~iii----e~a~VPviVDAGiG~pSdAa~aMElG-~DaVL~NTA---iA~A~DP 220 (262)
T COG2022 149 EAGCAAVMPLGAPIGSGLGLQNPYNLEIII----EEADVPVIVDAGIGTPSDAAQAMELG-ADAVLLNTA---IARAKDP 220 (262)
T ss_pred hcCceEeccccccccCCcCcCCHHHHHHHH----HhCCCCEEEeCCCCChhHHHHHHhcc-cceeehhhH---hhccCCh
Confidence 876421 11122333 23445555554 35689999999999999999999988 788766532 3444444
Q ss_pred HHHHHHcC
Q 015161 332 IEVVRASG 339 (412)
Q Consensus 332 ~~~A~~~g 339 (412)
..+|+++.
T Consensus 221 v~MA~Af~ 228 (262)
T COG2022 221 VAMARAFA 228 (262)
T ss_pred HHHHHHHH
Confidence 55555443
No 331
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=47.12 E-value=2.8e+02 Score=26.95 Aligned_cols=120 Identities=14% Similarity=0.217 Sum_probs=74.4
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh--CCCcEE--EE-------e---CCCCC-CHHHHHHHHHHHHcC
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSF--IL-------D---ANEGY-KPQEAVEVLEKLYEM 258 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~--~~~~~l--~v-------D---aN~~~-~~~~A~~~~~~l~~~ 258 (412)
+.++++.+.||+.+-+.-. -+.++.++..+.+++. ..++.+ -+ | ....| +++||.++.+.=-|+
T Consensus 90 ~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~ 169 (293)
T PRK07315 90 EDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDF 169 (293)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCE
Confidence 3455667789999999876 3556777766666652 112211 01 1 11224 599999988432232
Q ss_pred ---CCCCc---eeecCCCCCCHHHHHHhHHHhhccc-CCeEEe-CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 259 ---GVTPV---LFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAA-DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 259 ---~l~~~---~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
++.+. | -.+.+.-+++.++++++ .+ ++|+.+ |=|=.+.++++++++.| ++-+|+..
T Consensus 170 LAv~iG~vHG~y-~t~~k~l~~e~L~~i~~----~~~~iPlVlhGGSGi~~e~~~~~i~~G-i~KiNv~T 233 (293)
T PRK07315 170 LAAGIGNIHGPY-PENWEGLDLDHLEKLTE----AVPGFPIVLHGGSGIPDDQIQEAIKLG-VAKVNVNT 233 (293)
T ss_pred EeeccccccccC-CCCCCcCCHHHHHHHHH----hccCCCEEEECCCCCCHHHHHHHHHcC-CCEEEEcc
Confidence 11122 3 23334567888888875 45 488855 67778889999999988 55666653
No 332
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.70 E-value=1.4e+02 Score=28.21 Aligned_cols=68 Identities=21% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015161 274 WEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 274 ~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~ 347 (412)
++.+..+-+.+++.+++||+.|= ++++-++..++.+ .+++|- ++ |...--+++.+++++|.+++.-++
T Consensus 61 ~~rl~~~v~~l~~~~~~piSIDT--~~~~v~~aaL~~g-~~iINd-is--~~~~~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 61 LERVIPVLRALAGEPDVPISVDT--FNAEVAEAALKAG-ADIIND-VS--GGRGDPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred HHHHHHHHHHHHhcCCCeEEEeC--CcHHHHHHHHHhC-CCEEEe-CC--CCCCChHHHHHHHHcCCCEEEECc
Confidence 33444444444445589998883 4566678888877 677653 22 221114667889999999877554
No 333
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=46.44 E-value=90 Score=29.73 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=60.6
Q ss_pred HHHHHHHHcCCCC--CceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHH
Q 015161 249 VEVLEKLYEMGVT--PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 326 (412)
Q Consensus 249 ~~~~~~l~~~~l~--~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git 326 (412)
.++++..++.|.. .+.-|+..-...++.+..+++ .+++||---.-+.++.++.+.-..| +|.+.+=..-.+-.
T Consensus 71 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~----~~~~PvL~KDFIid~~QI~eA~~~G-ADaVLLI~~~L~~~ 145 (254)
T PF00218_consen 71 AEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRK----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLIAAILSDD 145 (254)
T ss_dssp HHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHH----HSSS-EEEES---SHHHHHHHHHTT--SEEEEEGGGSGHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHH----HhCCCcccccCCCCHHHHHHHHHcC-CCEeehhHHhCCHH
Confidence 3455666666532 124566655556666777664 5789999999999999999988887 58877766556655
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 015161 327 GALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~ 346 (412)
...++..+|+..|+.+.+-.
T Consensus 146 ~l~~l~~~a~~lGle~lVEV 165 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEV 165 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEE
Confidence 56789999999999987643
No 334
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=46.39 E-value=4.4e+02 Score=28.99 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHcC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEM 258 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~----~~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 258 (412)
.+.+...+++.++.+.|...+.+-+-. .++.+.++.|++. +-++.|..|-+-.+.. |+..++.+++.
T Consensus 107 ~D~eatv~Qi~~l~~aGceiVRvtv~~--~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~--Al~a~~~vdki 177 (733)
T PLN02925 107 KDVEATVDQVMRIADKGADIVRITVQG--KKEADACFEIKNTLVQKGYNIPLVADIHFAPSV--ALRVAECFDKI 177 (733)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHH--HHHHHHhcCCe
Confidence 355667899999999999999998854 5677777777773 6679999999876653 33344444443
No 335
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=46.26 E-value=2.7e+02 Score=26.53 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEccC
Q 015161 325 VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
....++.++.++++|+++..|.+
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE
Confidence 55677888888889998765433
No 336
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=46.22 E-value=2.8e+02 Score=26.77 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec----CCC---C-------CCHHHHHHhH
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ----PVH---R-------DDWEGLGHVS 281 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe----P~~---~-------~d~~~~~~l~ 281 (412)
++.-.+.++.+++..++..+.+--++.+++++..+.++.+++.+. .+||= |-. . .|.+.+.++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~ga--d~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv 160 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGA--DALELNFSCPHGMPERGMGAAVGQDPELVEEIC 160 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCC--CEEEEECCCCCCCCCCCCchhhccCHHHHHHHH
Confidence 333444444444444456677777777788888888888877664 37773 322 0 3456677766
Q ss_pred HHhhcccCCeEEeCCC--CCCHHHHHHHHHcCCCCEEE
Q 015161 282 HIAKDKFGVSVAADES--CRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 282 ~~~~~~~~ipIa~dEs--~~~~~~~~~~i~~~a~d~v~ 317 (412)
+.+++.+++||..==+ ..+..++.+.+....+|.+.
T Consensus 161 ~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 161 RWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 6666666788766432 22445565544444467665
No 337
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=46.08 E-value=2.7e+02 Score=26.44 Aligned_cols=64 Identities=17% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEec-----C---CChhHHHHHHHHHHH-h--CCCcEEEEeCCCCCCHHHHHHH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKV-----G---KNLKEDIEVLRAIRA-V--HPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKv-----G---~~~~~D~~~v~avr~-~--~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
.+++++.+.++++.+.|-..+++-. | .+.+++++++..+-+ . .-++.+.+|....-..+.|++.
T Consensus 20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 20 LSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 3788899999999999999999942 1 133445555543333 2 1278899998765555555443
No 338
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=45.57 E-value=2.1e+02 Score=26.49 Aligned_cols=131 Identities=15% Similarity=0.246 Sum_probs=79.6
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc--
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-- 257 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~-- 257 (412)
|....+-..+|+...+ .+.+.|-..+-+.+-.. ..-.+.++.+|+.|-...+.+..+. ..+....++..++-
T Consensus 60 ~~dvHLMv~~p~~~i~---~~~~~gad~i~~H~Ea~-~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vl 133 (220)
T PRK08883 60 PIDVHLMVKPVDRIIP---DFAKAGASMITFHVEAS-EHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLIL 133 (220)
T ss_pred CEEEEeccCCHHHHHH---HHHHhCCCEEEEcccCc-ccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEE
Confidence 3444444557766544 46667989998887531 1223557888888767777766554 44544456555542
Q ss_pred -CCCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 258 -MGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 258 -~~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+.+.|-+=-|.+-+..++.++++++...+ ..++||..|=.+. .+.+.++.+.| +|++.+
T Consensus 134 vMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG-Ad~vVv 194 (220)
T PRK08883 134 LMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG-ADMFVA 194 (220)
T ss_pred EEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC-CCEEEE
Confidence 12223344555555556667776653221 2358998887766 78888888887 576644
No 339
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=44.93 E-value=3.3e+02 Score=27.19 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=85.9
Q ss_pred HHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHH----HHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-C-
Q 015161 158 DAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAE----AAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-H- 230 (412)
Q Consensus 158 Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~----~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~- 230 (412)
...++..++|+.-.|-...++ . ..-.+. ..+..++..+.||+.+=+.-. .++++.++.-+.+.+. .
T Consensus 80 ~~~A~~~~VPValHLDHg~~~-----~--~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~ 152 (345)
T cd00946 80 RSMAEHYGVPVVLHTDHCAKK-----L--LPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAK 152 (345)
T ss_pred HHHHHHCCCCEEEECCCCCCc-----c--chhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 445777778876555432211 0 000121 133445556789999988866 4667788776666541 1
Q ss_pred CCc----EE--------EEeC----C-CCCC-HHHHHHHHHHH------H--------cCCCCCcee-ecCCCCCCHHHH
Q 015161 231 PDS----SF--------ILDA----N-EGYK-PQEAVEVLEKL------Y--------EMGVTPVLF-EQPVHRDDWEGL 277 (412)
Q Consensus 231 ~~~----~l--------~vDa----N-~~~~-~~~A~~~~~~l------~--------~~~l~~~~i-EeP~~~~d~~~~ 277 (412)
-++ +| -++. + ..|| +++|.+|++++ . -.|+ |- .+| .-|++-+
T Consensus 153 ~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~---Y~~~~p--~L~~~~L 227 (345)
T cd00946 153 INMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGV---YKPGNV--KLQPEIL 227 (345)
T ss_pred cCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccC---CCCCCC--ccCHHHH
Confidence 111 11 1111 1 2364 99999999986 2 1232 33 333 4578888
Q ss_pred HHhHHHhhccc------CCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 278 GHVSHIAKDKF------GVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 278 ~~l~~~~~~~~------~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+++++.+++.+ ++|+.+ |=|=...++++++++.|.+ =+|++
T Consensus 228 ~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~e~i~kai~~GI~-KiNi~ 275 (345)
T cd00946 228 GEHQDYVREKLGLADDKPLYFVFHGGSGSTKEEIREAISYGVV-KMNID 275 (345)
T ss_pred HHHHHHHHHhhccccCCCCCEEEeCCCCCCHHHHHHHHHcCCe-eEEeC
Confidence 88855433344 577765 6677778899999998843 34554
No 340
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=44.80 E-value=3.1e+02 Score=26.84 Aligned_cols=138 Identities=14% Similarity=0.216 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHH-HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDI-EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~-~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
.+.+++...++.+.+.|.+.|++--| +-+..|+ +.++.+++.+.-..+.+..|+..-. +.++.|.+.++. ++
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~----~~~~~L~~aGl~--~v 118 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA----RFAAELADAGLK--RL 118 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHH----HHHHHHHHcCCC--eE
Confidence 35677777777777889988888656 3334444 3455565543212678889986533 356677777764 55
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCC-Cc--HHHHHHHHHHHHHcCCc
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAK-VG--VLGALEIIEVVRASGLN 341 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~-~G--it~~l~i~~~A~~~gi~ 341 (412)
-=-+..-+.+.+.+++. . + +... ...+..+.+.+. .-+.+...- -| ..+..++++++++.|+.
T Consensus 119 ~ISlDs~~~e~~~~i~~-----~------g-~~~~vl~~i~~~~~~Gi-~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~ 185 (329)
T PRK13361 119 NISLDTLRPELFAALTR-----N------G-RLERVIAGIDAAKAAGF-ERIKLNAVILRGQNDDEVLDLVEFCRERGLD 185 (329)
T ss_pred EEEeccCCHHHhhhhcC-----C------C-CHHHHHHHHHHHHHcCC-CceEEEEEEECCCCHHHHHHHHHHHHhcCCe
Confidence 43444444455555531 1 1 1111 122233333332 111111111 14 56788899999999998
Q ss_pred EEE
Q 015161 342 LMI 344 (412)
Q Consensus 342 ~~~ 344 (412)
+..
T Consensus 186 ~~~ 188 (329)
T PRK13361 186 IAF 188 (329)
T ss_pred EEE
Confidence 743
No 341
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=44.56 E-value=3.9e+02 Score=27.91 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEe--CCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCC
Q 015161 196 LASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILD--ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRD 272 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vD--aN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~ 272 (412)
.++...+.|...|.+--. .+++.-...++.+++.|-.+.+.+- ..-..+.+..+++++++.+.|.....|-+..---
T Consensus 110 fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l 189 (468)
T PRK12581 110 FISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGIL 189 (468)
T ss_pred HHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 345555667776665433 2333333445566665543322221 1234456666667777766665545666666555
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCC---CHHHHHHHHHcCCCCEEE
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCR---SLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~---~~~~~~~~i~~~a~d~v~ 317 (412)
......++.+.+++..++||...=+.. .......++++| +|++.
T Consensus 190 ~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAG-ad~vD 236 (468)
T PRK12581 190 TPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAG-ADRID 236 (468)
T ss_pred CHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcC-CCEEE
Confidence 555555555555555556665432221 122334445555 45543
No 342
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.45 E-value=1.2e+02 Score=30.44 Aligned_cols=81 Identities=16% Similarity=0.195 Sum_probs=53.4
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc---HH----HHHHHHHHHHHcCCcEEEc
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---VL----GALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G---it----~~l~i~~~A~~~gi~~~~~ 345 (412)
.|+.+++|++ ..+.||..-+ +.+.++.+++++.| +|.+.+- -.| +. ....+.+++++.+++++..
T Consensus 224 ~w~~i~~ir~----~~~~pviiKg-V~~~eda~~a~~~G-~d~I~VS--nhGGrqld~~~~~~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 224 NWQDLRWLRD----LWPHKLLVKG-IVTAEDAKRCIELG-ADGVILS--NHGGRQLDDAIAPIEALAEIVAATYKPVLID 295 (361)
T ss_pred CHHHHHHHHH----hCCCCEEEec-CCCHHHHHHHHHCC-cCEEEEC--CCCcCCCcCCccHHHHHHHHHHHhCCeEEEe
Confidence 4667777764 6788998887 68999999999987 7876442 233 21 2334556666678999887
Q ss_pred cCcchHHHHHHHHHHH
Q 015161 346 GMVETRLAMGFAGHLS 361 (412)
Q Consensus 346 ~~~es~i~~~a~~hla 361 (412)
+-+.++.-..-++.+.
T Consensus 296 GGIr~g~Dv~KALaLG 311 (361)
T cd04736 296 SGIRRGSDIVKALALG 311 (361)
T ss_pred CCCCCHHHHHHHHHcC
Confidence 7665554344444443
No 343
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=44.21 E-value=3.4e+02 Score=27.13 Aligned_cols=74 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC--CC---CcHHHHHHHHHHHHHc--CCcEEEc
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL--AK---VGVLGALEIIEVVRAS--GLNLMIG 345 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~--~~---~Git~~l~i~~~A~~~--gi~~~~~ 345 (412)
+|+.++++++ .+++||..-+ +.+.++++.+.+.| +|.+.+-- .+ .|......+.+++++. .++++..
T Consensus 209 ~~~~l~~lr~----~~~~PvivKg-v~~~~dA~~a~~~G-~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 209 SPADIEFIAK----ISGLPVIVKG-IQSPEDADVAINAG-ADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred CHHHHHHHHH----HhCCcEEEec-CCCHHHHHHHHHcC-CCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE
Confidence 4666777764 5789998876 46889999999877 78877621 11 1222223344555555 5888887
Q ss_pred cCcchHH
Q 015161 346 GMVETRL 352 (412)
Q Consensus 346 ~~~es~i 352 (412)
+-+.++.
T Consensus 283 GGIr~g~ 289 (351)
T cd04737 283 SGVRRGE 289 (351)
T ss_pred CCCCCHH
Confidence 7665543
No 344
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.00 E-value=3e+02 Score=26.36 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee-----------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCC
Q 015161 230 HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE-----------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESC 298 (412)
Q Consensus 230 ~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE-----------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~ 298 (412)
+...-++.=...--+.+++++++++|.+.+......- +-+..+.+..++++++ +.++|++. +.
T Consensus 25 ~~~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~----~~Gl~~~t--e~ 98 (266)
T PRK13398 25 GEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGD----KYNLPVVT--EV 98 (266)
T ss_pred CCCEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHH----HcCCCEEE--ee
Q ss_pred CCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcc-hHHHHHHHHHHHccCCC
Q 015161 299 RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVE-TRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~e-s~i~~~a~~hlaaa~~~ 366 (412)
.+..++..+.+. +|++ ++| -..-..+...+...|+++.+..-.. +.=-...++......+|
T Consensus 99 ~d~~~~~~l~~~--vd~~-----kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn 162 (266)
T PRK13398 99 MDTRDVEEVADY--ADML-----QIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGN 162 (266)
T ss_pred CChhhHHHHHHh--CCEE-----EECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCC
No 345
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=44.00 E-value=1.9e+02 Score=27.45 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=59.1
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCceeec------C----CCCC-CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH
Q 015161 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFEQ------P----VHRD-DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK 306 (412)
Q Consensus 238 DaN~~~~~~~A~~~~~~l~~~~l~~~~iEe------P----~~~~-d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~ 306 (412)
|.....+++++++.++++.+.|.. +|.= | +.++ +++.+..+-+.++..+++||+.|= ++++-++.
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~--iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT--~~~~vi~~ 90 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGAD--IIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDT--YRAEVARA 90 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC--CCHHHHHH
Confidence 333345678888888777766653 5543 1 1111 222344443444455689999983 56677888
Q ss_pred HHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 307 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 307 ~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
+++.| ++++|- + .|.. .-++..+++++|.+++.
T Consensus 91 al~~G-~~iINs-i--s~~~-~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 91 ALEAG-ADIIND-V--SGGQ-DPAMLEVAAEYGVPLVL 123 (257)
T ss_pred HHHcC-CCEEEE-C--CCCC-CchhHHHHHHcCCcEEE
Confidence 88886 677753 1 1221 23566778899999876
No 346
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=43.96 E-value=1.7e+02 Score=27.32 Aligned_cols=133 Identities=14% Similarity=0.252 Sum_probs=77.9
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC-
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM- 258 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~- 258 (412)
|....+-..+|+... +.+.+.|...+-+..-.....-.+.++.+|+.|-...|.+..+.. .+....++..++-.
T Consensus 61 ~~DvHLMv~~P~~~i---~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VL 135 (229)
T PRK09722 61 PLDVHLMVTDPQDYI---DQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKIT 135 (229)
T ss_pred CeEEEEEecCHHHHH---HHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEE
Confidence 344444455776654 456667999998888521122345678889988777888877754 34444566655431
Q ss_pred --CCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 259 --GVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 259 --~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
.+.|-+--|++.++-++-.+++++...+ ...+.|..|=.+. ...+.++.++| +|++..-
T Consensus 136 vMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG-ad~~V~G 197 (229)
T PRK09722 136 VMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG-ADVFIVG 197 (229)
T ss_pred EEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC-CCEEEEC
Confidence 2222345666665555555555543222 2345677776644 55667777766 5766544
No 347
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=43.78 E-value=2.6e+02 Score=25.69 Aligned_cols=120 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEec--CC-ChhHHHHHHHHHHHh--CCCcEEEEeCCCC-------CCHHHHHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKV--GK-NLKEDIEVLRAIRAV--HPDSSFILDANEG-------YKPQEAVEVLEKLY 256 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKv--G~-~~~~D~~~v~avr~~--~~~~~l~vDaN~~-------~~~~~A~~~~~~l~ 256 (412)
+......++++..+.|-..+.+-+ +. +.++-.+.++++++. ..++.+++|..-. .+.++-.+.++...
T Consensus 74 ~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~ 153 (235)
T cd00958 74 NDKVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGA 153 (235)
T ss_pred CchhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHH
Confidence 344455667778889999886544 42 222333455666653 3567788865321 23443222255555
Q ss_pred cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe--CCCCCCHHH----HHHHHHcCCCCEE
Q 015161 257 EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA--DESCRSLDD----VKKIVKGNLADVI 316 (412)
Q Consensus 257 ~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~--dEs~~~~~~----~~~~i~~~a~d~v 316 (412)
+.+.. ||--+.. .+.+.++++.+ ..++||.. |....+..+ +.++++.|+ +.+
T Consensus 154 ~~GaD--~Ik~~~~-~~~~~~~~i~~----~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga-~gv 211 (235)
T cd00958 154 ELGAD--IVKTKYT-GDAESFKEVVE----GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGA-AGV 211 (235)
T ss_pred HHCCC--EEEecCC-CCHHHHHHHHh----cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCC-cEE
Confidence 66653 6665543 36788888874 45677744 345566655 667777775 444
No 348
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=43.77 E-value=3e+02 Score=26.26 Aligned_cols=119 Identities=15% Similarity=0.124 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCEEeEecC--CChhHHHHHHHHHHHhC-C-CcEEEEeCC----C-------CCCH---HHHH-HHHHHH
Q 015161 195 ELASKYRKQGFTTLKLKVG--KNLKEDIEVLRAIRAVH-P-DSSFILDAN----E-------GYKP---QEAV-EVLEKL 255 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG--~~~~~D~~~v~avr~~~-~-~~~l~vDaN----~-------~~~~---~~A~-~~~~~l 255 (412)
+.++++.+.|...+=+--. .+...+.+.++.+.+.+ + .+.+.+|+. + +|.. -++. ++++++
T Consensus 88 e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~ 167 (253)
T TIGR02129 88 TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEEL 167 (253)
T ss_pred HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHH
Confidence 4566778888876554211 12222367888888874 4 477889985 2 3532 1344 666666
Q ss_pred HcCCCCCceeecCCC------CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHc--CCCCEEEec
Q 015161 256 YEMGVTPVLFEQPVH------RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKG--NLADVINIK 319 (412)
Q Consensus 256 ~~~~l~~~~iEeP~~------~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~--~a~d~v~ik 319 (412)
+++ +. ..+=.=+. --|++.++++++ ..++||.+-=-+.+.+|+.++-+. +..+++.-+
T Consensus 168 ~~~-~~-~il~TdI~rDGtl~G~dlel~~~l~~----~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~ 233 (253)
T TIGR02129 168 SKY-CD-EFLIHAADVEGLCKGIDEELVSKLGE----WSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGS 233 (253)
T ss_pred Hhh-CC-EEEEeeecccCccccCCHHHHHHHHh----hCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeee
Confidence 655 43 23222222 346777888874 578999888788999999988433 455665444
No 349
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=43.48 E-value=3.5e+02 Score=27.07 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=77.0
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCCCCC---------ceeecCCCCCCHH----------------HHHHhHHHh--hc
Q 015161 234 SFILDANEGYKPQEAVEVLEKLYEMGVTP---------VLFEQPVHRDDWE----------------GLGHVSHIA--KD 286 (412)
Q Consensus 234 ~l~vDaN~~~~~~~A~~~~~~l~~~~l~~---------~~iEeP~~~~d~~----------------~~~~l~~~~--~~ 286 (412)
-+.+-...--++++|++++++|.+.+-.+ .|+|-|-..-.|. |++.+++.+ ..
T Consensus 55 lvIvGPCSIhd~~~aleyA~rLk~l~~~~~d~l~ivmR~y~eKPRTs~gwkGl~~DP~ldgs~~i~~GL~i~R~ll~~~~ 134 (356)
T PRK12822 55 LVIIGPCSIHDPQAALEYAKRLAVLQHQYLDQLYIVMRTYFEKPRTRKGWKGLIFDPDLDGSNDIEKGLRLARQLLLSIN 134 (356)
T ss_pred EEEEcCCcCCCHHHHHHHHHHHHHHHHhhcccEEEEEEeccccCCCCCCccccccCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 33444445557888899888887643221 3788885532333 333333220 24
Q ss_pred ccCCeEEeCCC-CCCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHcc
Q 015161 287 KFGVSVAADES-CRSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAG 363 (412)
Q Consensus 287 ~~~ipIa~dEs-~~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa 363 (412)
..++|++..=. -.+++-+.+++.- ..+| .++......+|...++++.+-......+..+..+-.+|+
T Consensus 135 ~~GlPvatE~ld~~~~qy~~Dlisw----------~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~AidAi~aa~ 204 (356)
T PRK12822 135 TLGLATATEFLDTTSFPYIADLICW----------GAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAIDAILAAR 204 (356)
T ss_pred HhCCCEEEeecccccHHHHHHHHHh----------hhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHHc
Confidence 68999988543 2234334444422 2346 556767778899999999988777788888888888887
Q ss_pred CCC
Q 015161 364 LGC 366 (412)
Q Consensus 364 ~~~ 366 (412)
.|.
T Consensus 205 ~pH 207 (356)
T PRK12822 205 SPH 207 (356)
T ss_pred CCC
Confidence 664
No 350
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=43.34 E-value=3.6e+02 Score=27.18 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHHcC-CCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCC---HHHHHHHHHHHHcCCCC
Q 015161 187 IVSPAEAAELASKYRKQG-FTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYK---PQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~G-f~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~---~~~A~~~~~~l~~~~l~ 261 (412)
+++++++.+.+.++++.+ -.-+=+|++. +...+++.+ +.++++| -|.+|..++=| +... .++.++.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~--~~~ag~D-~ItIDG~~GGTGAap~~~------~d~~GlP 254 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG--AAKAGAD-FITIDGAEGGTGAAPLTS------MDHVGLP 254 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH--HHHTT-S-EEEEE-TT---SSEECCH------HHHC---
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh--hhhccCC-EEEEeCCCCCCCCCchhH------HhhCCCc
Confidence 568899999998888876 6666666652 222333322 4456777 48899887532 2221 2234441
Q ss_pred CceeecCCCCCCHHHHHHhHHHhhc---ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 262 PVLFEQPVHRDDWEGLGHVSHIAKD---KFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 262 ~~~iEeP~~~~d~~~~~~l~~~~~~---~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
| ..++.+..+.++. +-.+.+..+--+.+..|+..++..|+ |.+.+
T Consensus 255 --~---------~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGA-D~v~i 302 (368)
T PF01645_consen 255 --T---------EYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGA-DAVYI 302 (368)
T ss_dssp --H---------HHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT--SEEE-
T ss_pred --H---------HHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCC-CeeEe
Confidence 1 1223333222221 23578888888999999999999985 77644
No 351
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=41.89 E-value=3.3e+02 Score=26.35 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC----C--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG----K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG----~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
+.+.+.+.++.+.+.|.+.+=+--. . ..++=.+.++.+++. .+++.+++=.. . +.+++++.++..++.|..
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 5567888889999999888765322 1 223334456666664 56788887664 4 889999999999998764
Q ss_pred CceeecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCC---CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 262 PVLFEQPVH-RDDWEGLGHVSHIAKDKFGVSVAADES---CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 262 ~~~iEeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs---~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
-..+=-|.- .-..+++.+.-+.+.+.+++||..=.. ..+++.+.++.+.. -+++-+|-+ +| +....++.+...
T Consensus 104 av~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~-pni~giK~s-~~d~~~~~~~~~~~~ 181 (303)
T PRK03620 104 GILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERC-PNLVGFKDG-VGDIELMQRIVRALG 181 (303)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEeC-CCCHHHHHHHHHHcC
Confidence 223333321 111222222211222467899876432 23566677776332 478888876 46 766666554322
Q ss_pred HcCCcEEEcc
Q 015161 337 ASGLNLMIGG 346 (412)
Q Consensus 337 ~~gi~~~~~~ 346 (412)
-++.+..|.
T Consensus 182 -~~f~vl~G~ 190 (303)
T PRK03620 182 -DRLLYLGGL 190 (303)
T ss_pred -CCeEEEeCC
Confidence 355555553
No 352
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=41.61 E-value=3.1e+02 Score=25.84 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCCCCC--CHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEE
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDANEGY--KPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN~~~--~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 293 (412)
+++-+..+++|++..+...+.+|.=.+| +++++++.++++.+.|..-.-||+=. +-.+-++.++ ..++||.
T Consensus 57 l~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~--~~~~~i~ai~-----~a~i~Vi 129 (240)
T cd06556 57 VNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE--WHIETLQMLT-----AAAVPVI 129 (240)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH--HHHHHHHHHH-----HcCCeEE
Confidence 4566677888888777788999987665 35889999999988886545788732 1122233333 2358887
Q ss_pred eC
Q 015161 294 AD 295 (412)
Q Consensus 294 ~d 295 (412)
+-
T Consensus 130 aR 131 (240)
T cd06556 130 AH 131 (240)
T ss_pred EE
Confidence 64
No 353
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=41.61 E-value=1.2e+02 Score=30.79 Aligned_cols=105 Identities=15% Similarity=0.152 Sum_probs=71.5
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCC---CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHH-HH
Q 015161 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDV-KK 306 (412)
Q Consensus 231 ~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~-~~ 306 (412)
|-+.+.+|. .+.++|+++++++.++.. .|+|=-++- .-.+..++|++ ...+.+|-+|--+.+.... .+
T Consensus 173 p~L~vALD~---~~~~~A~~i~~~l~~~~~--~~iKvG~~L~~~~G~~iVk~Lr~---~~~~~~I~~DLK~~Di~~~vv~ 244 (391)
T PRK13307 173 PYLQVALDL---PDLEEVERVLSQLPKSDH--IIIEAGTPLIKKFGLEVISKIRE---VRPDAFIVADLKTLDTGNLEAR 244 (391)
T ss_pred ceEEEecCC---CCHHHHHHHHHhcccccc--eEEEECHHHHHHhCHHHHHHHHH---hCCCCeEEEEecccChhhHHHH
Confidence 345566664 568899999999998754 388866552 22334445543 1256899999999988765 43
Q ss_pred HHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 307 IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 307 ~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
.+....+|.+.+... .|.....+..+.++++|+.+.+
T Consensus 245 ~~a~aGAD~vTVH~e-a~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 245 MAADATADAVVISGL-APISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred HHHhcCCCEEEEecc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 333334788888753 2344567788999999999887
No 354
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=41.03 E-value=4.6e+02 Score=27.75 Aligned_cols=107 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcc-cCCeEEe-------CCCCCCHHHHH
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAA-------DESCRSLDDVK 305 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~-------dEs~~~~~~~~ 305 (412)
|.+| .|+.++-+++++.|.+.|+. .||=-+|.........+++..... .+..++. |-...+-.++.
T Consensus 15 DG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd--~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e 92 (524)
T PRK12344 15 DGAQGEGISFSVEDKLRIARKLDELGVD--YIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQ 92 (524)
T ss_pred CcCcCCCCCCCHHHHHHHHHHHHHcCCC--EEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHH
Q ss_pred HHHHcCCCCEEEe----------cCCCCc----HHHHHHHHHHHHHcCCcEEEccC
Q 015161 306 KIVKGNLADVINI----------KLAKVG----VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 306 ~~i~~~a~d~v~i----------k~~~~G----it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.+.+.+ ++.+.+ +.-+.. +..+.+.+.+|+++|..+.++++
T Consensus 93 ~~~~~g-~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e 147 (524)
T PRK12344 93 ALLDAG-TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAE 147 (524)
T ss_pred HHHhCC-CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccc
No 355
>PRK10060 RNase II stability modulator; Provisional
Probab=41.02 E-value=2.1e+02 Score=31.12 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHcCCCCCc--eee--cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 243 YKPQEAVEVLEKLYEMGVTPV--LFE--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~--~iE--eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+.+-.-.+.+.++++++.+. .+| |....++.+...++.+.++ ..|+.|+.|.--.+...+..+... .+|++.+
T Consensus 505 ~~~~~~~~l~~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~-~~G~~ialDdfGtg~ssl~~L~~l-~~d~iKi 582 (663)
T PRK10060 505 ADQTIFTALKQALQELNFEYCPIDVELTESCLIENEELALSVIQQFS-QLGAQVHLDDFGTGYSSLSQLARF-PIDAIKL 582 (663)
T ss_pred CCCcHHHHHHHHHHHHCcCcceEEEEECCchhhcCHHHHHHHHHHHH-HCCCEEEEECCCCchhhHHHHHhC-CCCEEEE
Confidence 343333345555666665332 344 2222344555444444444 569999999887788778776665 4899988
Q ss_pred cCCCCc-HH-------HHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccCCC
Q 015161 319 KLAKVG-VL-------GALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGLGC 366 (412)
Q Consensus 319 k~~~~G-it-------~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~~~ 366 (412)
|-..+- +. -...++.+|+..|+.++.-+- |+. ..+.....+++
T Consensus 583 D~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeGV-Et~----~q~~~l~~~G~ 633 (663)
T PRK10060 583 DQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGV-ETA----KEDAFLTKNGV 633 (663)
T ss_pred CHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEecC-CCH----HHHHHHHHcCC
Confidence 865442 22 134579999999999988663 553 33344444443
No 356
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=40.99 E-value=2.8e+02 Score=27.72 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=76.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHcCCCC-------C--ceeecCCCCCCHHHH----------------HHhHHHh--h
Q 015161 233 SSFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPVHRDDWEGL----------------GHVSHIA--K 285 (412)
Q Consensus 233 ~~l~vDaN~~~~~~~A~~~~~~l~~~~l~-------~--~~iEeP~~~~d~~~~----------------~~l~~~~--~ 285 (412)
.-+++=...--++++|++++++|.+.+-. + .|+|-|--...|.|+ +.+++.+ .
T Consensus 55 llvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~ 134 (353)
T PRK12755 55 LLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDL 134 (353)
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHH
Confidence 34445555556788888888888764310 0 277777554444443 3322211 2
Q ss_pred cccCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 286 DKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 286 ~~~~ipIa~dEs~-~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
..+++|++..=.- .+++-+.++ +|+. .+| -++.....++|...+.++.+-..+...+..+..+-.||
T Consensus 135 ~e~Glp~atE~ld~~~~~y~~Dl-----vs~~-----aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~Ai~aa 204 (353)
T PRK12755 135 VELGLPLATEALDPISPQYLGDL-----ISWG-----AIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINAIRAA 204 (353)
T ss_pred HHhCCCEEEEecCcccHHHHHhh-----hhhe-----eeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHHHHHH
Confidence 4678999875332 233333332 3333 347 56788889999999999999887777787777776666
Q ss_pred cCC
Q 015161 363 GLG 365 (412)
Q Consensus 363 a~~ 365 (412)
..|
T Consensus 205 ~~~ 207 (353)
T PRK12755 205 AQP 207 (353)
T ss_pred hCC
Confidence 554
No 357
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=40.90 E-value=1.5e+02 Score=29.87 Aligned_cols=67 Identities=19% Similarity=0.251 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCC-----hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKN-----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-----~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
..+++++.+.++.+.+.|.+.|.+--|.+ ++.=.+.++++++.+|++.+- ++ ..+.++. +.|.+.|+
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~--~g-~lt~e~l----~~Lk~aGv 174 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIE--VQ-PLSEEEY----AELVELGL 174 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceec--cC-CCCHHHH----HHHHHcCC
Confidence 34789999999999999999999876632 333445567777767765553 33 4566664 45555554
No 358
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.51 E-value=3.5e+02 Score=26.14 Aligned_cols=79 Identities=13% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC-CeEEeCCCC---CCHHHHHHHHHcCCCCEEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG-VSVAADESC---RSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~-ipIa~dEs~---~~~~~~~~~i~~~a~d~v~ 317 (412)
.++++...++++.+.+.|.....|-+-+-.-......++.+.++++.+ +||...=+. ........+++.| ++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG-~~~id 229 (287)
T PRK05692 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEG-ITVFD 229 (287)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhC-CCEEE
Confidence 556777777777777776654455666555555555555444444443 566442111 1122334455555 56654
Q ss_pred ecCC
Q 015161 318 IKLA 321 (412)
Q Consensus 318 ik~~ 321 (412)
.-++
T Consensus 230 ~s~~ 233 (287)
T PRK05692 230 ASVG 233 (287)
T ss_pred EEcc
Confidence 4444
No 359
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=40.31 E-value=3.9e+02 Score=26.71 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=57.1
Q ss_pred HHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHh----CC--CcEEE-E-----------eC---------C
Q 015161 196 LASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAV----HP--DSSFI-L-----------DA---------N 240 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~----~~--~~~l~-v-----------Da---------N 240 (412)
.+.+..+.||+.+=+.-.. ++++.++.-+.+.+. += +.+|- + |. .
T Consensus 90 ~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~ 169 (347)
T PRK13399 90 TCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHD 169 (347)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCcccccccccc
Confidence 4566778899999988662 267787776666552 21 11221 0 21 1
Q ss_pred CCCC-HHHHHHHHHHHH----------cCCCCCceee--cCC-CCCCHHHHHHhHHHhhccc-CCeEEeCCC
Q 015161 241 EGYK-PQEAVEVLEKLY----------EMGVTPVLFE--QPV-HRDDWEGLGHVSHIAKDKF-GVSVAADES 297 (412)
Q Consensus 241 ~~~~-~~~A~~~~~~l~----------~~~l~~~~iE--eP~-~~~d~~~~~~l~~~~~~~~-~ipIa~dEs 297 (412)
..|| +++|.+|+++.. -.|+ |-. +|- +.-|++-++++++ .+ ++|+.+.=.
T Consensus 170 ~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~---Yk~~~~p~~~~L~~drl~eI~~----~v~~vPLVLHGg 234 (347)
T PRK13399 170 QMLTDPDQAVDFVQRTGVDALAIAIGTSHGA---YKFTRKPDGDILAIDRIEEIHA----RLPNTHLVMHGS 234 (347)
T ss_pred ccCCCHHHHHHHHHHHCcCEEhhhhccccCC---cCCCCCCChhhccHHHHHHHHh----hcCCCCEEEeCC
Confidence 2264 999999998753 1343 333 342 1246777888764 56 699877543
No 360
>PRK00208 thiG thiazole synthase; Reviewed
Probab=40.26 E-value=3.3e+02 Score=25.86 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCC-ChhH-HHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGK-NLKE-DIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE 266 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~-D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE 266 (412)
+++.+.+. +.+.|-..+-+-+-+ +... .-..+..|.. .++.++--.++..|.+||++.++.-.+..- ..||-
T Consensus 22 s~~~~~~a---i~asg~~ivTvalrR~~~~~~~~~~~~~i~~--~~~~~lpNTaG~~ta~eAv~~a~lare~~~-~~~iK 95 (250)
T PRK00208 22 SPQVMQEA---IEASGAEIVTVALRRVNLGQGGDNLLDLLPP--LGVTLLPNTAGCRTAEEAVRTARLAREALG-TNWIK 95 (250)
T ss_pred CHHHHHHH---HHHhCCCeEEEEEEeecCCCCcchHHhhccc--cCCEECCCCCCCCCHHHHHHHHHHHHHHhC-CCeEE
Confidence 55554443 345677777665531 1111 1122222221 356777777888999999988877666421 13653
Q ss_pred cCCC-------CCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe--cCCCC--cHHHHHHHHHH
Q 015161 267 QPVH-------RDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI--KLAKV--GVLGALEIIEV 334 (412)
Q Consensus 267 eP~~-------~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i--k~~~~--Git~~l~i~~~ 334 (412)
==+- +|..+.++.-....++ -..+|++.| ++...+++.+.| ++++.+ .+--. |+...-.+..+
T Consensus 96 lEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~----d~~~ak~l~~~G-~~~vmPlg~pIGsg~gi~~~~~i~~i 170 (250)
T PRK00208 96 LEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD----DPVLAKRLEEAG-CAAVMPLGAPIGSGLGLLNPYNLRII 170 (250)
T ss_pred EEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC----CHHHHHHHHHcC-CCEeCCCCcCCCCCCCCCCHHHHHHH
Confidence 2222 2222222222111111 223567664 566677777775 788866 32222 34222223344
Q ss_pred HHHcCCcEEEccCcchHH
Q 015161 335 VRASGLNLMIGGMVETRL 352 (412)
Q Consensus 335 A~~~gi~~~~~~~~es~i 352 (412)
.+..+++++..+-+.++-
T Consensus 171 ~e~~~vpVIveaGI~tpe 188 (250)
T PRK00208 171 IEQADVPVIVDAGIGTPS 188 (250)
T ss_pred HHhcCCeEEEeCCCCCHH
Confidence 444688988876665543
No 361
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=40.17 E-value=1.6e+02 Score=30.44 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=63.5
Q ss_pred HHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCC-
Q 015161 245 PQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAK- 322 (412)
Q Consensus 245 ~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~- 322 (412)
..+|+..+-+ +-+-|- ..++|+|.-..-...++.+ +..-+||-.|+.=.+++.+.+.++.+.+.++-+-++.
T Consensus 164 ~q~al~l~~~~l~~pGd-~v~vE~PtY~~~~~~~~~~-----g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~q 237 (459)
T COG1167 164 AQQALDLLLRLLLDPGD-TVLVEDPTYPGALQALEAL-----GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQ 237 (459)
T ss_pred HHHHHHHHHHHhCCCCC-EEEEcCCCcHHHHHHHHHc-----CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCC
Confidence 4566665544 444442 3699999854332222221 2224688889999999999999987656665554443
Q ss_pred --Cc----HHHHHHHHHHHHHcCCcEEEccC
Q 015161 323 --VG----VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 --~G----it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
.| ...-.+++++|+++++.++=-..
T Consensus 238 NPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 238 NPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 36 23567899999999999876443
No 362
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=38.98 E-value=2.1e+02 Score=26.66 Aligned_cols=73 Identities=19% Similarity=0.283 Sum_probs=48.7
Q ss_pred eCCCC-CCHHHHHHHHHHHHc-CCCCCceee------cCCCCCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHH
Q 015161 238 DANEG-YKPQEAVEVLEKLYE-MGVTPVLFE------QPVHRDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIV 308 (412)
Q Consensus 238 DaN~~-~~~~~A~~~~~~l~~-~~l~~~~iE------eP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i 308 (412)
+++.- .+.++...+...-++ +++.+.|+| +|++ .+-.+++++ .+ ++||..|=-+.+.+++++++
T Consensus 126 ~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~~g~~v~---~e~i~~v~~----~~~~~pl~vGGGIrs~e~a~~l~ 198 (223)
T TIGR01768 126 KAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSGAPEPVP---PELVAEVKK----VLDKARLFVGGGIRSVEKAREMA 198 (223)
T ss_pred cccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCCCCCCcC---HHHHHHHHH----HcCCCCEEEecCCCCHHHHHHHH
Confidence 34443 566665555554444 465557999 4444 344566553 34 79999999999999999999
Q ss_pred HcCCCCEEEe
Q 015161 309 KGNLADVINI 318 (412)
Q Consensus 309 ~~~a~d~v~i 318 (412)
+.+ +|.+.+
T Consensus 199 ~aG-AD~VVV 207 (223)
T TIGR01768 199 EAG-ADTIVT 207 (223)
T ss_pred HcC-CCEEEE
Confidence 876 677654
No 363
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.86 E-value=2.9e+02 Score=24.76 Aligned_cols=138 Identities=12% Similarity=0.132 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF 265 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i 265 (412)
...++++..+.++.+.+.|.+.+.+..-. ....+.++.+++..+.+ .+.++.-++.+++ +.+. +.+.. ++
T Consensus 19 r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~--~~~~e~~~~~~~~~~~~--~~g~gtvl~~d~~-~~A~---~~gAd--gv 88 (187)
T PRK07455 19 RAPDLELGLQMAEAVAAGGMRLIEITWNS--DQPAELISQLREKLPEC--IIGTGTILTLEDL-EEAI---AAGAQ--FC 88 (187)
T ss_pred EcCCHHHHHHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHhCCCc--EEeEEEEEcHHHH-HHHH---HcCCC--EE
Confidence 34578888899999999999999998753 23556777777766542 2334445556543 3332 23432 55
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCC--cHHHHHHHHHHHHHc-CCcE
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKV--GVLGALEIIEVVRAS-GLNL 342 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~--Git~~l~i~~~A~~~-gi~~ 342 (412)
=-|-- +.+ ..+.++ ..+++...| ++|+.++.++.+.| +|++-+=++.. |+.... .+.... ++++
T Consensus 89 ~~p~~--~~~-~~~~~~----~~~~~~i~G--~~t~~e~~~A~~~G-adyv~~Fpt~~~~G~~~l~---~~~~~~~~ipv 155 (187)
T PRK07455 89 FTPHV--DPE-LIEAAV----AQDIPIIPG--ALTPTEIVTAWQAG-ASCVKVFPVQAVGGADYIK---SLQGPLGHIPL 155 (187)
T ss_pred ECCCC--CHH-HHHHHH----HcCCCEEcC--cCCHHHHHHHHHCC-CCEEEECcCCcccCHHHHH---HHHhhCCCCcE
Confidence 43432 222 223332 346677777 89999999999876 79987766642 343333 333445 5888
Q ss_pred EEcc
Q 015161 343 MIGG 346 (412)
Q Consensus 343 ~~~~ 346 (412)
++-+
T Consensus 156 vaiG 159 (187)
T PRK07455 156 IPTG 159 (187)
T ss_pred EEeC
Confidence 8754
No 364
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=38.68 E-value=3.1e+02 Score=28.93 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccC--------CeEEeCCCCCCHHHHHHHHHc
Q 015161 239 ANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFG--------VSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 239 aN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~--------ipIa~dEs~~~~~~~~~~i~~ 310 (412)
.+-.|+.++-+++++.|.+.|+. .||=-+|....+....+++..+.... +|....=+-....|+...++.
T Consensus 99 ~gv~fs~eeKi~Ia~~L~~~GVd--~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a 176 (503)
T PLN03228 99 PGGSLTPPQKLEIARQLAKLRVD--IMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEA 176 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC--EEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHh
Q ss_pred ------CCCCEE----------EecCCCCc-HHHHHHHHHHHHHcCCc-EEEccCcchHHHHHHHHHHH
Q 015161 311 ------NLADVI----------NIKLAKVG-VLGALEIIEVVRASGLN-LMIGGMVETRLAMGFAGHLS 361 (412)
Q Consensus 311 ------~a~d~v----------~ik~~~~G-it~~l~i~~~A~~~gi~-~~~~~~~es~i~~~a~~hla 361 (412)
..+.++ +++.++-. +..+.+++++|+++|.. +.+++...+..-....+.++
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~ 245 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKIL 245 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHH
No 365
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=38.58 E-value=2.6e+02 Score=28.00 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=61.4
Q ss_pred eeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh----CCCcEEEEeCCCCCCHHHHHHHHHHHHcC
Q 015161 183 ITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV----HPDSSFILDANEGYKPQEAVEVLEKLYEM 258 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~----~~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 258 (412)
.+.+..+.+...+++.++.+.|...+.+-+-. .++.+.+..|++. +-.+.|..|-+-.|... ++-++.++..
T Consensus 23 t~t~t~Dv~atv~QI~~L~~aGceivRvavp~--~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lA--l~a~~~v~ki 98 (359)
T PF04551_consen 23 TNTDTRDVEATVAQIKRLEEAGCEIVRVAVPD--MEAAEALKEIKKRLRALGSPIPLVADIHFDYRLA--LEAIEAVDKI 98 (359)
T ss_dssp --S-TT-HHHHHHHHHHHHHCT-SEEEEEE-S--HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHH--HHHHHC-SEE
T ss_pred CCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHH--HHHHHHhCeE
Confidence 33445567778899999999999999998853 4666777776664 56799999999887643 3334444443
Q ss_pred CCCCc-e---eecCCCCCC-HHHHHHhHHHhhcccCCeEEeCCCCCCH
Q 015161 259 GVTPV-L---FEQPVHRDD-WEGLGHVSHIAKDKFGVSVAADESCRSL 301 (412)
Q Consensus 259 ~l~~~-~---iEeP~~~~d-~~~~~~l~~~~~~~~~ipIa~dEs~~~~ 301 (412)
.++|- + +++-. .+ .+..+++.+..+ ..++||=.|=+.-++
T Consensus 99 RINPGNi~~~~~~~~--g~~~~~~~~vv~~ak-e~~ipIRIGvN~GSL 143 (359)
T PF04551_consen 99 RINPGNIVDEFQEEL--GSIREKVKEVVEAAK-ERGIPIRIGVNSGSL 143 (359)
T ss_dssp EE-TTTSS----SS---SS-HHHHHHHHHHHH-HHT-EEEEEEEGGGS
T ss_pred EECCCcccccccccc--cchHHHHHHHHHHHH-HCCCCEEEecccccC
Confidence 33321 1 12211 22 234455444333 357888776554443
No 366
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=38.46 E-value=3.5e+02 Score=25.62 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-------e
Q 015161 194 AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-------E 266 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i-------E 266 (412)
.+.++++.+.|...+=+.--+ +++..+.+..+++.+-+.-+.+-.+. +.+....+++....+ .|+ .
T Consensus 105 e~f~~~~~~aGvdgviipDlp-~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gf----iy~vs~~G~TG 177 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADLP-LEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGF----VYLVSRAGVTG 177 (256)
T ss_pred HHHHHHHHHcCCCEEEECCCC-hHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCC----EEEEECCCCCC
Confidence 444556667788776665332 34445566777776655444543333 344433444432212 122 1
Q ss_pred c--CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 267 Q--PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 267 e--P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+ .+.++..+-+++++ +.++.||+.|=-+.+.++++++.+.| +|++.+
T Consensus 178 ~~~~~~~~~~~~i~~lr----~~~~~pi~vgfGI~~~e~~~~~~~~G-ADgvVv 226 (256)
T TIGR00262 178 ARNRAASALNELVKRLK----AYSAKPVLVGFGISKPEQVKQAIDAG-ADGVIV 226 (256)
T ss_pred CcccCChhHHHHHHHHH----hhcCCCEEEeCCCCCHHHHHHHHHcC-CCEEEE
Confidence 2 23333344455554 45688999999999999999999876 577644
No 367
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=38.02 E-value=2.7e+02 Score=28.47 Aligned_cols=107 Identities=20% Similarity=0.330 Sum_probs=64.9
Q ss_pred eCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCCC---CCHHHHHHhHHHhhcccCC----eEEeCCCCCCHHHHHH
Q 015161 238 DANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV----SVAADESCRSLDDVKK 306 (412)
Q Consensus 238 DaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~i----pIa~dEs~~~~~~~~~ 306 (412)
|.+| .++.++=+++++.|+++|+. +||=-.+. .+++..+.+.. ..+. .++ .-......++..
T Consensus 12 DG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~--~IE~g~p~~s~~~~~~~~~i~~----~~~~~~~~~~~-~~~~~~~~~~ea 84 (409)
T COG0119 12 DGEQAPGVSFSVEEKIRIAKALDDLGVD--YIEAGFPVASPGDFEFVRAIAE----KAGLFICALIA-ALARAIKRDIEA 84 (409)
T ss_pred cCCcCCCCcCCHHHHHHHHHHHHHcCCC--EEEEeCCcCChhhHHHHHHHHH----hcCcccchhhh-hhHHhHHhhHHH
Confidence 5555 57899999999999999985 99987763 45666665542 1122 111 111112236677
Q ss_pred HHHcCCCCEE-E------------ecCCCCc-HHHHHHHHHHHHHcCCcEEE--ccCcchHH
Q 015161 307 IVKGNLADVI-N------------IKLAKVG-VLGALEIIEVVRASGLNLMI--GGMVETRL 352 (412)
Q Consensus 307 ~i~~~a~d~v-~------------ik~~~~G-it~~l~i~~~A~~~gi~~~~--~~~~es~i 352 (412)
+++.+. +.+ . ++.++.- +..+.+.+.+|+.+|+.+.. .+.+.+..
T Consensus 85 ~~~a~~-~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~ 145 (409)
T COG0119 85 LLEAGV-DRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDP 145 (409)
T ss_pred HHhCCC-CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCH
Confidence 777663 332 1 2222223 44567799999999999984 44444443
No 368
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=36.88 E-value=3.2e+02 Score=26.48 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec---CCCCCCHHHHHHhHHHhhcccCCeEEe
Q 015161 218 EDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAA 294 (412)
Q Consensus 218 ~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~ 294 (412)
.|.+.+++|+++. ++.++-=...++ ..-++.|++.++. +|-+ +.|.+ +.+...+ .++++|+..
T Consensus 54 ~~p~~I~~I~~~V-~iPVig~~kigh-----~~Ea~~L~~~GvD--iIDeTe~lrPad--e~~~~~K----~~f~vpfma 119 (287)
T TIGR00343 54 SDPKMIKEIMDAV-SIPVMAKVRIGH-----FVEAQILEALGVD--YIDESEVLTPAD--WTFHIDK----KKFKVPFVC 119 (287)
T ss_pred CCHHHHHHHHHhC-CCCEEEEeeccH-----HHHHHHHHHcCCC--EEEccCCCCcHH--HHHHHHH----HHcCCCEEc
Confidence 4667788888864 343433222222 4445667778874 7743 33322 2233333 356899998
Q ss_pred CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 295 DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 295 dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
| +.|+.+..+.++.| +|++.-+.
T Consensus 120 d--~~~l~EAlrai~~G-admI~Tt~ 142 (287)
T TIGR00343 120 G--ARDLGEALRRINEG-AAMIRTKG 142 (287)
T ss_pred c--CCCHHHHHHHHHCC-CCEEeccc
Confidence 7 56889999999988 68988873
No 369
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=36.50 E-value=1.9e+02 Score=27.87 Aligned_cols=62 Identities=23% Similarity=0.447 Sum_probs=36.8
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
+|++.|.+ .++++++||..| +.+..++....+ .+|++|+-.- ...-..+...|.+.|.++.+
T Consensus 74 eGL~iL~~-vk~~~GlpvvTe--V~~~~~~~~~ae--~vDilQIgAr---~~rntdLL~a~~~t~kpV~l 135 (281)
T PRK12457 74 EGLRIFEE-VKARFGVPVITD--VHEVEQAAPVAE--VADVLQVPAF---LARQTDLVVAIAKTGKPVNI 135 (281)
T ss_pred HHHHHHHH-HHHHHCCceEEE--eCCHHHHHHHhh--hCeEEeeCch---hhchHHHHHHHhccCCeEEe
Confidence 34444543 345789999885 456666665553 4888877432 12223455556667777766
No 370
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=35.85 E-value=4.8e+02 Score=26.39 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEe-CCCCCC---HHHHHHHHH-HHHcCCCC-C
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILD-ANEGYK---PQEAVEVLE-KLYEMGVT-P 262 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vD-aN~~~~---~~~A~~~~~-~l~~~~l~-~ 262 (412)
+.+.+.+.++.+.+.|++.|-.-.+-........+..+-..++.-++.|= ---+|. .++-.+++. +|+.+++. +
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~ 111 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPVKDREDMERIFNEQLEKLGTDYI 111 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEEEeecCCccccCHHHHHHHHHHHHHHhCCchh
Confidence 34456677777888888888766553222233333333222333333322 223353 344444443 36655431 0
Q ss_pred -ceeecCCCCCC---------HHHHHHhHHHhhcccCCeEEeCCCCCC-HHHHHHHHHcCCCCEEEecCCCCcHHH--HH
Q 015161 263 -VLFEQPVHRDD---------WEGLGHVSHIAKDKFGVSVAADESCRS-LDDVKKIVKGNLADVINIKLAKVGVLG--AL 329 (412)
Q Consensus 263 -~~iEeP~~~~d---------~~~~~~l~~~~~~~~~ipIa~dEs~~~-~~~~~~~i~~~a~d~v~ik~~~~Git~--~l 329 (412)
+|+=.-+..+. ++-++++. +-|.=.-+|-|.++ .+.|.+++..+-.|++|+-...+=-.. -.
T Consensus 112 D~yliH~l~~e~~~k~~~~g~~df~~kak-----~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~ 186 (391)
T COG1453 112 DYYLIHGLNTETWEKIERLGVFDFLEKAK-----AEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGT 186 (391)
T ss_pred hhhhhccccHHHHHHHHccChHHHHHHHH-----hcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhccc
Confidence 01111121222 22233332 23555667777766 567899999999999999877654111 24
Q ss_pred HHHHHHHHcCCcEEE
Q 015161 330 EIIEVVRASGLNLMI 344 (412)
Q Consensus 330 ~i~~~A~~~gi~~~~ 344 (412)
+.+..|.++|+.+++
T Consensus 187 ~~l~~A~~~~~gI~I 201 (391)
T COG1453 187 EGLKYAASKGLGIFI 201 (391)
T ss_pred HHHHHHHhCCCcEEE
Confidence 677899999999987
No 371
>PLN02858 fructose-bisphosphate aldolase
Probab=35.65 E-value=4.5e+02 Score=31.53 Aligned_cols=132 Identities=12% Similarity=0.159 Sum_probs=78.2
Q ss_pred eeeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh-CC-Cc----EE----------EEeCC
Q 015161 178 TITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV-HP-DS----SF----------ILDAN 240 (412)
Q Consensus 178 ~i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~-~~-~~----~l----------~vDaN 240 (412)
+||+...+..... .+.+.++.+.||+.+=+.-. -+++++++.-+.+.+. .+ ++ +| ..+.+
T Consensus 1169 ~vpV~lHLDHg~~---~~~i~~ai~~Gf~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~ 1245 (1378)
T PLN02858 1169 SVPITVHFDHGTS---KHELLEALELGFDSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEY 1245 (1378)
T ss_pred CCCEEEECCCCCC---HHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 3455444444322 23355566789999999876 4677888877776652 11 11 11 11111
Q ss_pred -CCC-CHHHHHHHHHHHH--c--------CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHH
Q 015161 241 -EGY-KPQEAVEVLEKLY--E--------MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKI 307 (412)
Q Consensus 241 -~~~-~~~~A~~~~~~l~--~--------~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~ 307 (412)
..| ++++|.+|+++.. - +|+ |-.. -+.-|++-++++++... ..++|+.+ |=|=...++++++
T Consensus 1246 ~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~---Y~~~-~p~l~~~~l~~i~~~~~-~~~vpLVlHGgSG~~~~~~~~a 1320 (1378)
T PLN02858 1246 EAKLTDVDQAKEFIDETGIDALAVCIGNVHGK---YPAS-GPNLRLDLLKELRALSS-KKGVLLVLHGASGLPESLIKEC 1320 (1378)
T ss_pred ccCCCCHHHHHHHHHhcCCcEEeeeccccccc---CCCC-CCccCHHHHHHHHHHhc-CCCCcEEEeCCCCCCHHHHHHH
Confidence 125 4899999998642 1 232 3321 24567888898876311 11689866 5566677889999
Q ss_pred HHcCCCCEEEe
Q 015161 308 VKGNLADVINI 318 (412)
Q Consensus 308 i~~~a~d~v~i 318 (412)
++.|... +|+
T Consensus 1321 i~~Gi~K-iNi 1330 (1378)
T PLN02858 1321 IENGVRK-FNV 1330 (1378)
T ss_pred HHcCCeE-EEe
Confidence 9887443 344
No 372
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.26 E-value=2.2e+02 Score=26.37 Aligned_cols=60 Identities=22% Similarity=0.329 Sum_probs=40.7
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 339 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~g 339 (412)
+++..+++++ ..++||.++=.+.+.++++++++.+ ++.+.+--.. +...-.+.+++++++
T Consensus 59 ~~~~i~~i~~----~~~~pv~~~GGI~s~~d~~~~l~~G-~~~v~ig~~~--~~~p~~~~~i~~~~~ 118 (243)
T cd04731 59 MLDVVERVAE----EVFIPLTVGGGIRSLEDARRLLRAG-ADKVSINSAA--VENPELIREIAKRFG 118 (243)
T ss_pred cHHHHHHHHH----hCCCCEEEeCCCCCHHHHHHHHHcC-CceEEECchh--hhChHHHHHHHHHcC
Confidence 5666777764 5679999999999999999999876 7776554222 222223444555554
No 373
>PF12040 DUF3526: Domain of unknown function (DUF3526); InterPro: IPR021913 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 149 to 170 amino acids in length. This domain has a single completely conserved residue P that may be functionally important.
Probab=35.17 E-value=82 Score=27.42 Aligned_cols=49 Identities=22% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHh
Q 015161 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHV 280 (412)
Q Consensus 221 ~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l 280 (412)
+...++|+.. |.|..|++....-.-+-|++|++. |+|+ +|. ++.++...
T Consensus 4 e~~~~~r~~~-------d~h~~~d~~~~~~~~~~l~~ypv~--~~~~-lp~-~f~~~~~~ 52 (156)
T PF12040_consen 4 EFDLAQREAL-------DGHNPWDPPFAALKDAFLAQYPVD--WVED-LPV-NFRGLWYQ 52 (156)
T ss_pred HHHHHHHHHh-------ccCCccchhHHHHHHHHHHHCCcc--cccc-CCc-cHHHHHHH
Confidence 4455666544 999999988776666778999974 9999 665 66665543
No 374
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=35.09 E-value=3.1e+02 Score=26.64 Aligned_cols=40 Identities=18% Similarity=-0.004 Sum_probs=29.6
Q ss_pred CHHHHHHhHHHhhcccCCeEE--eCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 273 DWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
+++.++++++ ...+||. +-=-+.++.++..+++.|+ |.+.
T Consensus 185 ~~elLkei~~----~~~iPVV~fAiGGI~TPedAa~~melGA-dGVa 226 (287)
T TIGR00343 185 PVELLLEVLK----LGKLPVVNFAAGGVATPADAALMMQLGA-DGVF 226 (287)
T ss_pred CHHHHHHHHH----hCCCCEEEeccCCCCCHHHHHHHHHcCC-CEEE
Confidence 4677888764 4579996 4335789999999999884 5553
No 375
>PLN02535 glycolate oxidase
Probab=34.74 E-value=4.9e+02 Score=26.20 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=52.2
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC---C--CcHHHHHHHHHHHHHc--CCcEEE
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA---K--VGVLGALEIIEVVRAS--GLNLMI 344 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~---~--~Git~~l~i~~~A~~~--gi~~~~ 344 (412)
-+|+.+++|++ .+++||..-+- .+.++.+.+++.| +|++.+--. . .|+....-+.++.++. .++++.
T Consensus 210 ~tW~~i~~lr~----~~~~PvivKgV-~~~~dA~~a~~~G-vD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~ 283 (364)
T PLN02535 210 LSWKDIEWLRS----ITNLPILIKGV-LTREDAIKAVEVG-VAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL 283 (364)
T ss_pred CCHHHHHHHHh----ccCCCEEEecC-CCHHHHHHHHhcC-CCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe
Confidence 46788888764 67899999887 6788999999887 788755311 1 1222223334444433 688888
Q ss_pred ccCcchHHHHHHHHHH
Q 015161 345 GGMVETRLAMGFAGHL 360 (412)
Q Consensus 345 ~~~~es~i~~~a~~hl 360 (412)
.+-+.++.-..-++.+
T Consensus 284 dGGIr~g~Dv~KALal 299 (364)
T PLN02535 284 DGGVRRGTDVFKALAL 299 (364)
T ss_pred eCCCCCHHHHHHHHHc
Confidence 7766555444444433
No 376
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=34.73 E-value=2.4e+02 Score=22.59 Aligned_cols=72 Identities=14% Similarity=0.270 Sum_probs=49.6
Q ss_pred HHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHHHc--CCcEEEccCc
Q 015161 276 GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVRAS--GLNLMIGGMV 348 (412)
Q Consensus 276 ~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~~~--gi~~~~~~~~ 348 (412)
++..+...+++ .+..+..=....+.+++.+.+.....|++-+-..... ...+.++++.+++. ++.+++|+..
T Consensus 16 Gl~~la~~l~~-~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 16 GLLYLAAYLRK-AGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHH-TTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHH-CCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 44455544443 3555533233345578888787778999999875555 88889999998887 8899998864
No 377
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=34.55 E-value=3.5e+02 Score=27.37 Aligned_cols=86 Identities=21% Similarity=0.213 Sum_probs=51.9
Q ss_pred HHHHHhHHHhhcccC-CeEEeCCCCC-CHHHHHHHHHcCCCCEEEecCCC-------------CcH-H--HHHHHHHHHH
Q 015161 275 EGLGHVSHIAKDKFG-VSVAADESCR-SLDDVKKIVKGNLADVINIKLAK-------------VGV-L--GALEIIEVVR 336 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~-ipIa~dEs~~-~~~~~~~~i~~~a~d~v~ik~~~-------------~Gi-t--~~l~i~~~A~ 336 (412)
+++.++.+.+|+.++ +||..-+... +..++.++++.+.+|++.++-.- +|+ + ....+.+.+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 334444444555566 8888777655 78888888888778999888653 231 1 2223444444
Q ss_pred Hc----CCcEEEccCcchHHHHHHHHHH
Q 015161 337 AS----GLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 337 ~~----gi~~~~~~~~es~i~~~a~~hl 360 (412)
+. .++++..+-+-++.-...++-+
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaL 306 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALAL 306 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHc
Confidence 33 5788877766565444444433
No 378
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=34.52 E-value=1.9e+02 Score=27.41 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=41.8
Q ss_pred HHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 197 ASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 197 ~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
++++.+.||+.+=+-+-. .+|...++++-+. ++++-+..=-+.+.+.++|.++++..
T Consensus 155 v~kAie~Gyk~IaVTV~~--~~~A~~iRele~~~~~~~~if~VHtTGis~eeA~~l~~~~ 212 (258)
T PF09872_consen 155 VKKAIEMGYKRIAVTVAD--AEDAKKIRELEKEEGVNIYIFGVHTTGISEEEAERLFEYA 212 (258)
T ss_pred HHHHHHcCCceEEEEecC--HHHHHHHHHhhccCCCceEEEEEEccCCCHHHHHHHHHHh
Confidence 456778999999888863 4577777777664 66766665567889999987776544
No 379
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=34.51 E-value=2.7e+02 Score=26.16 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHc-CCCCCceeecCCCC---CCHHHHHHhHHHhhcccCC-eEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 242 GYKPQEAVEVLEKLYE-MGVTPVLFEQPVHR---DDWEGLGHVSHIAKDKFGV-SVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~-~~l~~~~iEeP~~~---~d~~~~~~l~~~~~~~~~i-pIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
.++.++...+...-++ +++...|+|.=-.. .+.+-++++++ .++. ||..|=-+.+.+++++++..+ +|.+
T Consensus 136 ~~~~~~~~~~~~lA~~~~g~~~vYle~gs~~g~~~~~e~I~~v~~----~~~~~pvivGGGIrs~e~a~~~l~~G-AD~V 210 (232)
T PRK04169 136 PLDKPDIAAYAALAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKK----ALDITPLIYGGGIRSPEQARELMAAG-ADTI 210 (232)
T ss_pred CCChHHHHHHHHHHHHHcCCCeEEEECCCCCCCCCCHHHHHHHHH----hcCCCcEEEECCCCCHHHHHHHHHhC-CCEE
Confidence 3566666555554443 34444688854332 23566676654 4667 999999999999999999887 5777
Q ss_pred Ee
Q 015161 317 NI 318 (412)
Q Consensus 317 ~i 318 (412)
++
T Consensus 211 VV 212 (232)
T PRK04169 211 VV 212 (232)
T ss_pred EE
Confidence 55
No 380
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=34.18 E-value=3.2e+02 Score=25.69 Aligned_cols=63 Identities=11% Similarity=0.212 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHcCCCCE---------EEecCCCCc----HHHHHHHHHHHHHcCCcE------EEccCcchHHHHHHHHH
Q 015161 299 RSLDDVKKIVKGNLADV---------INIKLAKVG----VLGALEIIEVVRASGLNL------MIGGMVETRLAMGFAGH 359 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~---------v~ik~~~~G----it~~l~i~~~A~~~gi~~------~~~~~~es~i~~~a~~h 359 (412)
.++..|+.++.+|+-.+ +..|--.|- +...+.+...|++++|++ ++||.+|+.+.-..-+.
T Consensus 94 PNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~ 173 (316)
T KOG2368|consen 94 PNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAE 173 (316)
T ss_pred cchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHH
Confidence 56667777776665333 234433443 344567899999999985 67888888776655554
Q ss_pred HH
Q 015161 360 LS 361 (412)
Q Consensus 360 la 361 (412)
+.
T Consensus 174 V~ 175 (316)
T KOG2368|consen 174 VV 175 (316)
T ss_pred HH
Confidence 43
No 381
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=34.17 E-value=3.4e+02 Score=26.82 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=19.3
Q ss_pred CcHHHHHHHHHHHHHcCCcEEEccC
Q 015161 323 VGVLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 323 ~Git~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+...+.++.++.|++.|+++..+.+
T Consensus 176 ~~~~~~~~~i~~a~~~Gi~v~s~~i 200 (343)
T TIGR03551 176 LSTAEWIEIIKTAHKLGIPTTATIM 200 (343)
T ss_pred CCHHHHHHHHHHHHHcCCcccceEE
Confidence 3456789999999999999865443
No 382
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=33.87 E-value=47 Score=22.03 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred HHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC
Q 015161 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH 230 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~ 230 (412)
.+.++...||..++.-.|-......+..+.+|.++
T Consensus 3 ~a~Rl~~AgF~~i~~g~g~~~~~eeEt~qkL~~AF 37 (41)
T PF11590_consen 3 TAERLRSAGFATIGSGAGLPSSEEEETRQKLRRAF 37 (41)
T ss_dssp HHHHHHHTT-EEECTTS------HHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhccCccccchhhHHHHHHHHHHH
Confidence 45667788999998887755556666666666653
No 383
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=33.79 E-value=5e+02 Score=25.96 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=73.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHcCCCC-------C--ceeecCCCC----------------CCHHHHHHhHHHh--h
Q 015161 233 SSFILDANEGYKPQEAVEVLEKLYEMGVT-------P--VLFEQPVHR----------------DDWEGLGHVSHIA--K 285 (412)
Q Consensus 233 ~~l~vDaN~~~~~~~A~~~~~~l~~~~l~-------~--~~iEeP~~~----------------~d~~~~~~l~~~~--~ 285 (412)
.-+++-...--++++|++++++|.+.+-. + .|+|-|-.. +-.+|++.+++.+ -
T Consensus 49 llvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~GL~~~R~ll~~i 128 (344)
T TIGR00034 49 LLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINHGLRIARKLLLDL 128 (344)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 34445555556788899988888764321 0 378888222 1136666555432 1
Q ss_pred cccCCeEEeCCCC-CCHHHHHHHHHcCCCCEEEecCCCCc--HHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 286 DKFGVSVAADESC-RSLDDVKKIVKGNLADVINIKLAKVG--VLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 286 ~~~~ipIa~dEs~-~~~~~~~~~i~~~a~d~v~ik~~~~G--it~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
..+++|++..=.- .+++-+.+++.-+ .+| -++..-..++|...+.++.+-..+...+..+..+-.||
T Consensus 129 ~~~GlPvatE~ld~~~~~y~~Dlisw~----------aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~Ai~aA 198 (344)
T TIGR00034 129 VNLGLPIAGEFLDMISPQYLADLFSWG----------AIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDAIRAA 198 (344)
T ss_pred HHhCCCeEEEecCcCcHHHHHHHHhhc----------cccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHHHHHH
Confidence 3678999875332 2344444444322 346 45666678888889999998877777777666555555
Q ss_pred cC
Q 015161 363 GL 364 (412)
Q Consensus 363 a~ 364 (412)
..
T Consensus 199 ~~ 200 (344)
T TIGR00034 199 AA 200 (344)
T ss_pred hC
Confidence 43
No 384
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=33.77 E-value=1.5e+02 Score=27.22 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 192 EAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 192 ~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
++.+..+++.+.|+..|-+. |...++.+++.+|++.+.+|..-.-.-.++++++..+
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~-------~~g~~~~~k~~~~~~~i~~~~~~nv~N~~s~~~~~~~ 59 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVS-------NPGLLELLKELGPDLKIIADYSLNVFNSESARFLKEL 59 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEc-------CHHHHHHHHHhCCCCcEEEecCccCCCHHHHHHHHHc
Confidence 34555666777888886543 6788999999999999999999766555556776555
No 385
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=33.69 E-value=5.3e+02 Score=26.23 Aligned_cols=99 Identities=16% Similarity=0.137 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeec----CC-C---------CCCHHHHHHhHH
Q 015161 217 KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQ----PV-H---------RDDWEGLGHVSH 282 (412)
Q Consensus 217 ~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEe----P~-~---------~~d~~~~~~l~~ 282 (412)
+...+.++.+++..++..+.+-.|+.-+.++..++++.+++.+. .+||= |- . ..|.+.+.++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~--d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~ 161 (420)
T PRK08318 84 EVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGA--DGIELNFGCPHGMSERGMGSAVGQVPELVEMYTR 161 (420)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCC--CEEEEeCCCCCCccccCCcccccCCHHHHHHHHH
Confidence 33334444444333445556665655466777777777777664 36773 21 0 035566777766
Q ss_pred HhhcccCCeEEeCCC--CCCHHHHHHHHHcCCCCEEE
Q 015161 283 IAKDKFGVSVAADES--CRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 283 ~~~~~~~ipIa~dEs--~~~~~~~~~~i~~~a~d~v~ 317 (412)
.+++.+.+||..==+ ..+..++.+.+....+|.+.
T Consensus 162 ~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 162 WVKRGSRLPVIVKLTPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred HHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEE
Confidence 666666788765332 33456666655555577766
No 386
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.63 E-value=4.3e+02 Score=25.15 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-------------------------HHHHHHhHHHhhcccCCeEEeC--C
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-------------------------WEGLGHVSHIAKDKFGVSVAAD--E 296 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-------------------------~~~~~~l~~~~~~~~~ipIa~d--E 296 (412)
+.++.+++++.+.+.++. +||=-+|..| ++.++++++ +...+|+..- -
T Consensus 24 ~~~~~~~~~~~l~~~Gad--~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~---~~~~~p~vlm~Y~ 98 (258)
T PRK13111 24 DLETSLEIIKALVEAGAD--IIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIRE---KDPTIPIVLMTYY 98 (258)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh---cCCCCCEEEEecc
Confidence 567777777777777763 7776555433 222333321 3456785332 1
Q ss_pred C---CCCHHHHHHHH-HcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccC
Q 015161 297 S---CRSLDDVKKIV-KGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 297 s---~~~~~~~~~~i-~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+ -++.+.|.+.+ +.|.-.++.+|+. +.+..++...|+++|+..++-+.
T Consensus 99 N~i~~~G~e~f~~~~~~aGvdGviipDLp---~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 99 NPIFQYGVERFAADAAEAGVDGLIIPDLP---PEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred cHHhhcCHHHHHHHHHHcCCcEEEECCCC---HHHHHHHHHHHHHcCCcEEEEeC
Confidence 2 23566665544 4554444555553 56888999999999999887443
No 387
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=33.49 E-value=4.4e+02 Score=25.33 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHcCC-----CCCceeecCCC-CCCHHHHHHhHHHhhccc-CCeEEeCCCCCCHHHHHHHHHcCCCCE
Q 015161 243 YKPQEAVEVLEKLYEMG-----VTPVLFEQPVH-RDDWEGLGHVSHIAKDKF-GVSVAADESCRSLDDVKKIVKGNLADV 315 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~-----l~~~~iEeP~~-~~d~~~~~~l~~~~~~~~-~ipIa~dEs~~~~~~~~~~i~~~a~d~ 315 (412)
|+.++=+++++.|.+.| +. .||=|-. ..|.+..+++.+ ... ...|..= ...+.+++.++++.+ ++.
T Consensus 18 ~~~~~Kv~i~~~L~~~G~~~~~v~--~IE~~s~~~~d~~~v~~~~~---~~~~~~~v~~~-~r~~~~die~A~~~g-~~~ 90 (279)
T cd07947 18 YTVEQIVKIYDYLHELGGGSGVIR--QTEFFLYTEKDREAVEACLD---RGYKFPEVTGW-IRANKEDLKLVKEMG-LKE 90 (279)
T ss_pred CCHHHHHHHHHHHHHcCCCCCccc--eEEecCcChHHHHHHHHHHH---cCCCCCEEEEE-ecCCHHHHHHHHHcC-cCE
Confidence 47788789999999999 86 8997522 234444444432 221 1234443 677889999999876 455
Q ss_pred EEecCC--------CCc------HHHHHHHHHHHHHcCCcEEEcc
Q 015161 316 INIKLA--------KVG------VLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 316 v~ik~~--------~~G------it~~l~i~~~A~~~gi~~~~~~ 346 (412)
+.+=.+ +.| +....+++++|+++|+.+..+-
T Consensus 91 v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 91 TGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred EEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 442111 112 2335578999999999876654
No 388
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=33.45 E-value=3.6e+02 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCcEEEccCc
Q 015161 325 VLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 325 it~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
..+++++++.|++.|+++..+.++
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEe
Confidence 457789999999999998766554
No 389
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=33.44 E-value=1.8e+02 Score=28.25 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=29.4
Q ss_pred CHHHHHHhHHHhhcccCCeEE--eCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 273 DWEGLGHVSHIAKDKFGVSVA--ADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa--~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
+++.++++.+ ...+||. +-=-+.++.++..+++.|+ |.+.
T Consensus 191 ~~elL~ei~~----~~~iPVV~~AeGGI~TPedaa~vme~GA-dgVa 232 (293)
T PRK04180 191 PYELVKEVAE----LGRLPVVNFAAGGIATPADAALMMQLGA-DGVF 232 (293)
T ss_pred CHHHHHHHHH----hCCCCEEEEEeCCCCCHHHHHHHHHhCC-CEEE
Confidence 5777888864 4578985 3335789999999999884 5553
No 390
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.40 E-value=5.5e+02 Score=26.35 Aligned_cols=63 Identities=19% Similarity=0.453 Sum_probs=41.1
Q ss_pred CHHHH-HHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHH---h-CCC-cEEEEeCCCCCCHH-HHHHH
Q 015161 189 SPAEA-AELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRA---V-HPD-SSFILDANEGYKPQ-EAVEV 251 (412)
Q Consensus 189 ~~~~~-~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~---~-~~~-~~l~vDaN~~~~~~-~A~~~ 251 (412)
+|..+ .+-+.+..+++|..+=+.......++.+.++.+++ + .|+ +-+.+|++-+-..+ ||..|
T Consensus 167 dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 167 DPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred chHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 34443 34456777888988888776556667666666555 3 465 66779999887744 44444
No 391
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=33.20 E-value=4.5e+02 Score=25.33 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHh--CCCcEEEEe------------C-CC-CCCHHHHHHHHHHH-H
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAV--HPDSSFILD------------A-NE-GYKPQEAVEVLEKL-Y 256 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~--~~~~~l~vD------------a-N~-~~~~~~A~~~~~~l-~ 256 (412)
+.+++..+.||+.+-+.-. .+.++.++..+.+++. ..++.+-.| . .. .-+++||.++.++. .
T Consensus 88 e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~ 167 (281)
T PRK06806 88 EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDV 167 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCC
Confidence 4555677889999999866 3455666665666552 112222111 1 11 23689999998652 1
Q ss_pred cC-C-----CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 257 EM-G-----VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAA-DESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 257 ~~-~-----l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+| . ++..+ . .-+.-+++.++++++ ..++|+.+ |=|=.+.+++.++++.| ++-+++.
T Consensus 168 DyLAvaiG~~hg~~-~-~~~~l~~~~L~~i~~----~~~iPlV~hG~SGI~~e~~~~~i~~G-~~kinv~ 230 (281)
T PRK06806 168 DALAVAIGNAHGMY-N-GDPNLRFDRLQEIND----VVHIPLVLHGGSGISPEDFKKCIQHG-IRKINVA 230 (281)
T ss_pred CEEEEccCCCCCCC-C-CCCccCHHHHHHHHH----hcCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEh
Confidence 21 1 11112 1 123457888888875 56889855 66777889999999988 5566654
No 392
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=33.13 E-value=2.1e+02 Score=26.16 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=42.1
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGL 340 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi 340 (412)
+++-.+++++ ..++|+..+-.+.++++++++++.| +|.+.+.-.. +...-.+.+++++++.
T Consensus 61 ~~~~i~~i~~----~~~~pv~~~GgI~~~e~~~~~~~~G-ad~vvigs~~--l~dp~~~~~i~~~~g~ 121 (234)
T cd04732 61 NLELIEEIVK----AVGIPVQVGGGIRSLEDIERLLDLG-VSRVIIGTAA--VKNPELVKELLKEYGG 121 (234)
T ss_pred CHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcC-CCEEEECchH--HhChHHHHHHHHHcCC
Confidence 4566666654 4678999988899999999999987 7877653322 2333345566667765
No 393
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=32.84 E-value=4.6e+02 Score=26.25 Aligned_cols=137 Identities=16% Similarity=0.248 Sum_probs=80.2
Q ss_pred eeeceeecCCCHHHHHHHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 179 ITTDITIPIVSPAEAAELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 179 i~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
+.+...++..+ +..+.++.+.+.|-..+=+.+. ..-+.-++.++.+|+.+|++.++. .| --|.+.|..+++.=.+
T Consensus 97 l~V~aavg~~~--~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~via-GN-V~T~e~a~~L~~aGad 172 (352)
T PF00478_consen 97 LLVAAAVGTRD--DDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIA-GN-VVTYEGAKDLIDAGAD 172 (352)
T ss_dssp BCEEEEEESST--CHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEE-EE-E-SHHHHHHHHHTT-S
T ss_pred ceEEEEecCCH--HHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEe-cc-cCCHHHHHHHHHcCCC
Confidence 33444444432 3356667778889999988875 344566778999999999888884 33 4456666554443111
Q ss_pred ---CCCCCc--eeec---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC
Q 015161 258 ---MGVTPV--LFEQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA 321 (412)
Q Consensus 258 ---~~l~~~--~iEe---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~ 321 (412)
.|+.|- ..=+ -+-.-++....+.++. +++.++||.+|=-+.+..|+.+++..| +|.+.+--.
T Consensus 173 ~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~-a~~~~v~iIADGGi~~sGDi~KAla~G-Ad~VMlG~l 242 (352)
T PF00478_consen 173 AVKVGIGPGSICTTREVTGVGVPQLTAVYECAEA-ARDYGVPIIADGGIRTSGDIVKALAAG-ADAVMLGSL 242 (352)
T ss_dssp EEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHH-HHCTTSEEEEESS-SSHHHHHHHHHTT--SEEEESTT
T ss_pred EEEEeccCCcccccccccccCCcHHHHHHHHHHH-hhhccCceeecCCcCcccceeeeeeec-ccceeechh
Confidence 121100 0000 0001134444554433 346789999999999999999999988 588776433
No 394
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.54 E-value=64 Score=30.37 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred CHHHHHHHHHcCCCCEEEecCCCCc---HHH---HHHHHHHHHHcCCcEEEcc-CcchHHHHHHHHHHHccCCCCceecc
Q 015161 300 SLDDVKKIVKGNLADVINIKLAKVG---VLG---ALEIIEVVRASGLNLMIGG-MVETRLAMGFAGHLSAGLGCFKFIDL 372 (412)
Q Consensus 300 ~~~~~~~~i~~~a~d~v~ik~~~~G---it~---~l~i~~~A~~~gi~~~~~~-~~es~i~~~a~~hlaaa~~~~~~~e~ 372 (412)
++..++.+++.-+--+=-+|.++ | +.+ ..+.+++|++|||.+++|+ .+|..+.....-++.-
T Consensus 10 ~~~~~~d~Le~~g~yID~lKfg~-Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~---------- 78 (237)
T TIGR03849 10 PPKFVEDYLKVCGDYITFVKFGW-GTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLN---------- 78 (237)
T ss_pred CHHHHHHHHHHhhhheeeEEecC-ceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHH----------
Q ss_pred cCCcccccCCCCCceeeeCcEEeeCC
Q 015161 373 DTPLLLSEDPVLDGYEVSGAVYKFTN 398 (412)
Q Consensus 373 ~~p~~~~~d~~~~~~~~~~G~~~~p~ 398 (412)
..+++=-+.+++++|.+.+|+
T Consensus 79 -----~~k~lGf~~IEiS~G~~~i~~ 99 (237)
T TIGR03849 79 -----ECDELGFEAVEISDGSMEISL 99 (237)
T ss_pred -----HHHHcCCCEEEEcCCccCCCH
No 395
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=32.46 E-value=2.3e+02 Score=29.35 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHc--CCCEEeEec-CC---ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHH
Q 015161 188 VSPAEAAELASKYRKQ--GFTTLKLKV-GK---NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEV 251 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~--Gf~~~KiKv-G~---~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~ 251 (412)
.+++++.+.+.++.+. +.+.+-+-- |. +++.+.+.++.+++..+++.+.++.|+...++.+.++
T Consensus 60 Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L 129 (442)
T TIGR01290 60 LTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRL 129 (442)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHH
Confidence 4788888887776553 345555543 41 3356788899999888889999999998765544333
No 396
>PRK07695 transcriptional regulator TenI; Provisional
Probab=32.26 E-value=3.7e+02 Score=24.07 Aligned_cols=80 Identities=15% Similarity=0.231 Sum_probs=46.0
Q ss_pred HHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee------cC----CCCCCHHHHHHhHHHhhcccCCeE
Q 015161 223 LRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE------QP----VHRDDWEGLGHVSHIAKDKFGVSV 292 (412)
Q Consensus 223 v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE------eP----~~~~d~~~~~~l~~~~~~~~~ipI 292 (412)
++.+|+..++..+.+..+ +.+++. ++.+.+.. |+= .. .+..+++.++++.+ ..++||
T Consensus 86 ~~~~r~~~~~~~ig~s~~---s~e~a~----~a~~~Gad--yi~~g~v~~t~~k~~~~~~g~~~l~~~~~----~~~ipv 152 (201)
T PRK07695 86 VRSVREKFPYLHVGYSVH---SLEEAI----QAEKNGAD--YVVYGHVFPTDCKKGVPARGLEELSDIAR----ALSIPV 152 (201)
T ss_pred HHHHHHhCCCCEEEEeCC---CHHHHH----HHHHcCCC--EEEECCCCCCCCCCCCCCCCHHHHHHHHH----hCCCCE
Confidence 456666667777777543 566643 34444543 331 11 12224555666543 457888
Q ss_pred EeCCCCCCHHHHHHHHHcCCCCEEE
Q 015161 293 AADESCRSLDDVKKIVKGNLADVIN 317 (412)
Q Consensus 293 a~dEs~~~~~~~~~~i~~~a~d~v~ 317 (412)
.+-=-+ ++.++.++++.| +|++.
T Consensus 153 ia~GGI-~~~~~~~~~~~G-a~gva 175 (201)
T PRK07695 153 IAIGGI-TPENTRDVLAAG-VSGIA 175 (201)
T ss_pred EEEcCC-CHHHHHHHHHcC-CCEEE
Confidence 554444 788888888877 56654
No 397
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=32.25 E-value=1.9e+02 Score=28.14 Aligned_cols=49 Identities=27% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCCh----hHHHHHHHHHHHhCCCcEEE
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFI 236 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~D~~~v~avr~~~~~~~l~ 236 (412)
.+++++.+.+++..+.|++.|-+--|.++ +.=.+.++.|++.++++.+.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~ 88 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIH 88 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 47889999999888899999998755333 22256678888877776654
No 398
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=32.24 E-value=4.6e+02 Score=25.14 Aligned_cols=153 Identities=15% Similarity=0.102 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC----C--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG----K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG----~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
+.+.+.+.++.+.+.|.+.+=+--. . ..++=.+.++.+.+. .+++.+++=.. . +.++++++++..++.|..
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCC
Confidence 5567788889999999988865432 1 223333445666664 45678887664 4 889999999999998764
Q ss_pred CceeecCCC-CCCHHHHHHhHHHhhcccCCeEEeCC---CCCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 262 PVLFEQPVH-RDDWEGLGHVSHIAKDKFGVSVAADE---SCRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 262 ~~~iEeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dE---s~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
-..+=-|.- .-+.+++.+.-+.+.+.+++||..=. ...+++.+.++.+. .-+++-+|-+ +| +....++.+..
T Consensus 97 ~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~-~pnivgiKds-~~d~~~~~~~~~~~- 173 (289)
T cd00951 97 GILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAER-CPNLVGFKDG-VGDIELMRRIVAKL- 173 (289)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhc-CCCEEEEEeC-CCCHHHHHHHHHhc-
Confidence 223333321 11223322211122246789987643 23456677777752 2467778875 46 66666554322
Q ss_pred HcCCcEEEcc
Q 015161 337 ASGLNLMIGG 346 (412)
Q Consensus 337 ~~gi~~~~~~ 346 (412)
..++.+..|.
T Consensus 174 ~~~~~v~~G~ 183 (289)
T cd00951 174 GDRLLYLGGL 183 (289)
T ss_pred CCCeEEEeCC
Confidence 2356666554
No 399
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=31.89 E-value=3.5e+02 Score=24.67 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++.++++++ .+++||..+=-+.+.++++++++.| +|.+.+
T Consensus 61 ~~~~~i~~i~~----~~~~pv~~~GGI~~~ed~~~~~~~G-a~~vil 102 (233)
T PRK00748 61 VNLELIEAIVK----AVDIPVQVGGGIRSLETVEALLDAG-VSRVII 102 (233)
T ss_pred ccHHHHHHHHH----HCCCCEEEcCCcCCHHHHHHHHHcC-CCEEEE
Confidence 45666776654 4678998888889999999988877 566554
No 400
>PF00600 Flu_NS1: Influenza non-structural protein (NS1); InterPro: IPR000256 NS1 is a homodimeric RNA-binding protein found in influenza virus that is required for viral replication. NS1 binds polyA tails of mRNA keeping them in the nucleus. NS1 inhibits pre-mRNA splicing by tightly binding to a specific stem-bulge of U6 snRNA [].; GO: 0003723 RNA binding; PDB: 2Z0A_C 3P39_E 3P38_C 3P31_C 3M8A_H 3M5R_D 3EE9_B 3KWI_A 3KWG_B 2RHK_A ....
Probab=31.51 E-value=1.4e+02 Score=26.55 Aligned_cols=48 Identities=31% Similarity=0.446 Sum_probs=28.8
Q ss_pred ccccceeccCceeeeeeEEEEEEEECCCcEEEEEeccCCcc---CcccHHHHHH
Q 015161 59 PLIAPFTIATSRLDQVENVAIRIELSNGCVGWGEAPVLPHV---TAEDQQTAMV 109 (412)
Q Consensus 59 pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~G~GE~~~~~~~---~~e~~~~~~~ 109 (412)
-|+.-|..-..++. ..+++|--|++|.+ .||..|.|+. +.|++..++.
T Consensus 129 ~lKANFsViF~rLE--tLillRAFTeegai-vgEIsPlpslpGht~EDVKnAig 179 (217)
T PF00600_consen 129 ILKANFSVIFDRLE--TLILLRAFTEEGAI-VGEISPLPSLPGHTNEDVKNAIG 179 (217)
T ss_dssp EEEEEEEEETTEEE--EEEEEEEEETTS-E-EEEEEE-TTSS---HHHHHHHHH
T ss_pred EEEeeeEeeechhh--hhhhhhhhccCCee-EeeeccCCCCCCCCchhHHHhhh
Confidence 34555555555443 45789999999944 6788887655 4455555544
No 401
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.49 E-value=5.4e+02 Score=25.70 Aligned_cols=122 Identities=16% Similarity=0.228 Sum_probs=74.7
Q ss_pred HHHHHHHHH--cCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc---CCCCC--cee
Q 015161 194 AELASKYRK--QGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE---MGVTP--VLF 265 (412)
Q Consensus 194 ~~~~~~~~~--~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~---~~l~~--~~i 265 (412)
.+.+.++.+ .|...+=+.+.. .-+.-++.++.+|+.+|+..++. ..--|.+.|..++..=.+ .++.| ...
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIa--GNV~T~e~a~~Li~aGAD~vKVGIGpGSiCt 187 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICA--GNVVTGEMVEELILSGADIVKVGIGPGSVCT 187 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEE--ecccCHHHHHHHHHcCCCEEEEcccCCcccc
Confidence 455666666 488888888863 34456778999999999987663 334456666554443111 11110 011
Q ss_pred ec---CCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 266 EQ---PVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 266 Ee---P~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
=+ -+-.-++....+.++.. +..++||.+|--+.+..|+.+++..| .|.+.+-
T Consensus 188 Tr~vtGvG~PQltAV~~~a~~a-~~~gvpiIADGGi~~sGDI~KAlaaG-Ad~VMlG 242 (346)
T PRK05096 188 TRVKTGVGYPQLSAVIECADAA-HGLGGQIVSDGGCTVPGDVAKAFGGG-ADFVMLG 242 (346)
T ss_pred CccccccChhHHHHHHHHHHHH-HHcCCCEEecCCcccccHHHHHHHcC-CCEEEeC
Confidence 11 01111344444444332 35789999999999999999999988 4776653
No 402
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=31.47 E-value=3.7e+02 Score=25.83 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=74.7
Q ss_pred eeeeceeecCCC---HHHHHHHHHHHHHcCCCEEeEecC-C------ChhHHHHHHH----HHHHhCCCcEEEEeCCCCC
Q 015161 178 TITTDITIPIVS---PAEAAELASKYRKQGFTTLKLKVG-K------NLKEDIEVLR----AIRAVHPDSSFILDANEGY 243 (412)
Q Consensus 178 ~i~~~~~i~~~~---~~~~~~~~~~~~~~Gf~~~KiKvG-~------~~~~D~~~v~----avr~~~~~~~l~vDaN~~~ 243 (412)
.+|+..++...+ .++..+.++++. .|...+-+-+. + .+..+.+... .+++. .++.+.+=--..+
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKL~p~~ 173 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA-VDIPVFVKLSPNF 173 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH-HSSEEEEEE-STS
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 456666666666 667777777655 77888888876 1 2333444333 33332 3566766655544
Q ss_pred CHHHHHHHHHHHHcCCCCC-c----ee-------e--cCCCCCC----------HHHHHHhHHHhhcccC--CeEEeCCC
Q 015161 244 KPQEAVEVLEKLYEMGVTP-V----LF-------E--QPVHRDD----------WEGLGHVSHIAKDKFG--VSVAADES 297 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~-~----~i-------E--eP~~~~d----------~~~~~~l~~~~~~~~~--ipIa~dEs 297 (412)
+..+....+..+.+.++.- . +. | +|+.... .-.++.+++ +++.++ +||.+-=-
T Consensus 174 ~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~-~~~~~~~~i~Iig~GG 252 (295)
T PF01180_consen 174 TDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRE-LRKALGQDIPIIGVGG 252 (295)
T ss_dssp SCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHH-HHHHTTTSSEEEEESS
T ss_pred CchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHH-HHhccccceEEEEeCC
Confidence 4333344444444333210 0 11 1 1222100 123444332 334555 99999889
Q ss_pred CCCHHHHHHHHHcCCCCEEEec
Q 015161 298 CRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 298 ~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+++.+|+.+++.+| ++.+|+=
T Consensus 253 I~s~~da~e~l~aG-A~~Vqv~ 273 (295)
T PF01180_consen 253 IHSGEDAIEFLMAG-ASAVQVC 273 (295)
T ss_dssp --SHHHHHHHHHHT-ESEEEES
T ss_pred cCCHHHHHHHHHhC-CCHheec
Confidence 99999999999998 5888773
No 403
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=31.46 E-value=4.7e+02 Score=24.99 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecC-------CCC-CCHH-HHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQP-------VHR-DDWE-GLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP-------~~~-~d~~-~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
.++.++-+++++.|.+.|+. .||=- +|. .|.+ -.+.+. ...++.+..= +.+..+++++++.+
T Consensus 16 ~~s~e~K~~i~~~L~~~Gv~--~IEvGs~~~~~~~p~~~d~~~~~~~l~----~~~~~~~~~~--~~~~~dv~~A~~~g- 86 (274)
T cd07938 16 FIPTEDKIELIDALSAAGLR--RIEVTSFVSPKWVPQMADAEEVLAGLP----RRPGVRYSAL--VPNLRGAERALAAG- 86 (274)
T ss_pred CcCHHHHHHHHHHHHHcCCC--EEEeCCCCCcccccccCCHHHHHhhcc----cCCCCEEEEE--CCCHHHHHHHHHcC-
Confidence 47889999999999999985 89974 221 1222 222221 1223333221 25788999999887
Q ss_pred CCEEEecC--C------CCc------HHHHHHHHHHHHHcCCcEE
Q 015161 313 ADVINIKL--A------KVG------VLGALEIIEVVRASGLNLM 343 (412)
Q Consensus 313 ~d~v~ik~--~------~~G------it~~l~i~~~A~~~gi~~~ 343 (412)
++.+.+=. + +.+ +..+.+.+.+|+++|+.+.
T Consensus 87 ~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 87 VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 56554321 1 112 2346678999999999984
No 404
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.43 E-value=4.5e+02 Score=24.77 Aligned_cols=148 Identities=9% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcCCCEEeE-ecC---CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCCCCceeec
Q 015161 193 AAELASKYRKQGFTTLKL-KVG---KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQ 267 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~Ki-KvG---~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l~~~~iEe 267 (412)
..+.++.+.++|++.+=+ .+. ..-..+.+.++.+.+. .++.+.++. +--+.+++.+++.. .+..-+.-..+|+
T Consensus 32 p~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~-~~~pv~~gG-Gi~s~~d~~~l~~~G~~~vvigs~~~~~ 109 (258)
T PRK01033 32 PINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLASE-CFMPLCYGG-GIKTLEQAKKIFSLGVEKVSINTAALED 109 (258)
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHHh-CCCCEEECC-CCCCHHHHHHHHHCCCCEEEEChHHhcC
Confidence 355677788899877764 232 1223567778888775 356777766 44467777666532 1111111123454
Q ss_pred CCCCCCHHHHHHhHHHhhcccCCeEEeC------------------CCCCCHHHHHHHH-HcCCCCEEEecCCCCc-HH-
Q 015161 268 PVHRDDWEGLGHVSHIAKDKFGVSVAAD------------------ESCRSLDDVKKIV-KGNLADVINIKLAKVG-VL- 326 (412)
Q Consensus 268 P~~~~d~~~~~~l~~~~~~~~~ipIa~d------------------Es~~~~~~~~~~i-~~~a~d~v~ik~~~~G-it- 326 (412)
| +-+.++.+.+. ...+.++.| .+-.++.++.+.+ +.++-.++.-+..+.| ..
T Consensus 110 ~------~~~~~~~~~~~-~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G 182 (258)
T PRK01033 110 P------DLITEAAERFG-SQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKG 182 (258)
T ss_pred H------HHHHHHHHHhC-CCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCC
Confidence 4 33555544321 113556665 1233455665544 5565556667777766 32
Q ss_pred -HHHHHHHHHHHcCCcEEEccCcc
Q 015161 327 -GALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 327 -~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
..-.+.++++..++++..++-..
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~ 206 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAG 206 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCC
Confidence 23334566777899998877553
No 405
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=31.37 E-value=4.4e+02 Score=24.61 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHcCCCCCceeecCCCCCC-------HH--------------HHHHhHHHhhcccCCeEEe-CC-C-C-
Q 015161 244 KPQEAVEVLEKLYEMGVTPVLFEQPVHRDD-------WE--------------GLGHVSHIAKDKFGVSVAA-DE-S-C- 298 (412)
Q Consensus 244 ~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d-------~~--------------~~~~l~~~~~~~~~ipIa~-dE-s-~- 298 (412)
+.+...++++.+++.|+. ++|==+|..| .+ ..-++.+.+|+...+|+.+ .. + +
T Consensus 12 ~~~~~~~~~~~l~~~Gad--~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~ 89 (242)
T cd04724 12 DLETTLEILKALVEAGAD--IIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPIL 89 (242)
T ss_pred CHHHHHHHHHHHHHCCCC--EEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHH
Confidence 456667777777777653 6664433211 11 1112222334455778543 11 1 1
Q ss_pred -CCHHHHHH-HHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 299 -RSLDDVKK-IVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 299 -~~~~~~~~-~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
++.+.|.+ +.+.|+-.++.+|+. +.+..++...++++|+...+-....|+
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~---~ee~~~~~~~~~~~g~~~i~~i~P~T~ 141 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLP---PEEAEEFREAAKEYGLDLIFLVAPTTP 141 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCC---HHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 12355544 455664445666764 357778999999999987764433443
No 406
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=31.36 E-value=4e+02 Score=26.98 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=51.3
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc---H---HHHHH-HHHHHHH--cCCcEE
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG---V---LGALE-IIEVVRA--SGLNLM 343 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G---i---t~~l~-i~~~A~~--~gi~~~ 343 (412)
+|+.+++|++ .++.||...+- .+.++.+++++.| +|+|.+-- .| + ..+.. +.+++++ .+++++
T Consensus 233 tW~di~~lr~----~~~~pvivKgV-~s~~dA~~a~~~G-vd~I~Vs~--hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi 304 (381)
T PRK11197 233 SWKDLEWIRD----FWDGPMVIKGI-LDPEDARDAVRFG-ADGIVVSN--HGGRQLDGVLSSARALPAIADAVKGDITIL 304 (381)
T ss_pred CHHHHHHHHH----hCCCCEEEEec-CCHHHHHHHHhCC-CCEEEECC--CCCCCCCCcccHHHHHHHHHHHhcCCCeEE
Confidence 5777888764 68899999987 8889999999987 78875442 22 1 12233 2223333 368888
Q ss_pred EccCcchHHHHHHHHHH
Q 015161 344 IGGMVETRLAMGFAGHL 360 (412)
Q Consensus 344 ~~~~~es~i~~~a~~hl 360 (412)
..+-+-++.-..-++.|
T Consensus 305 ~dGGIr~g~Di~KALaL 321 (381)
T PRK11197 305 ADSGIRNGLDVVRMIAL 321 (381)
T ss_pred eeCCcCcHHHHHHHHHc
Confidence 87766555444444444
No 407
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=31.24 E-value=2.2e+02 Score=28.44 Aligned_cols=85 Identities=19% Similarity=0.266 Sum_probs=50.5
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecC-----CCCcHHHHHHHHHHHHH--cCCcEEE
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKL-----AKVGVLGALEIIEVVRA--SGLNLMI 344 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~-----~~~Git~~l~i~~~A~~--~gi~~~~ 344 (412)
..|+.++++++ ..++||..=|- .+.+|++++.+.| +|.+.+-- ...|+.....+.++.++ ..++++.
T Consensus 212 ~~w~~i~~~~~----~~~~pvivKgv-~~~~da~~~~~~G-~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~ 285 (356)
T PF01070_consen 212 LTWDDIEWIRK----QWKLPVIVKGV-LSPEDAKRAVDAG-VDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIA 285 (356)
T ss_dssp -SHHHHHHHHH----HCSSEEEEEEE--SHHHHHHHHHTT--SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEE
T ss_pred CCHHHHHHHhc----ccCCceEEEec-ccHHHHHHHHhcC-CCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEE
Confidence 35777888775 68999999888 8899999999988 67764431 01233333333333333 4699998
Q ss_pred ccCcchHHHHHHHHHHHc
Q 015161 345 GGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 345 ~~~~es~i~~~a~~hlaa 362 (412)
++-+-++.=..-++.|.|
T Consensus 286 dgGir~g~Dv~kalaLGA 303 (356)
T PF01070_consen 286 DGGIRRGLDVAKALALGA 303 (356)
T ss_dssp ESS--SHHHHHHHHHTT-
T ss_pred eCCCCCHHHHHHHHHcCC
Confidence 887766554444444433
No 408
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.05 E-value=4.8e+02 Score=25.00 Aligned_cols=62 Identities=23% Similarity=0.387 Sum_probs=34.5
Q ss_pred HHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 275 EGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 275 ~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
+|++.|.+ .++++++||..| +.+..++....+ .+|++|+-.-.+ +-..+...+.+.|.++.+
T Consensus 68 eGL~~L~~-vk~~~GlpvvTe--V~~~~~~~~v~~--~~DilQIgArn~---rn~~LL~a~g~t~kpV~l 129 (264)
T PRK05198 68 EGLKILQE-VKETFGVPVLTD--VHEPEQAAPVAE--VVDVLQIPAFLC---RQTDLLVAAAKTGKVVNI 129 (264)
T ss_pred HHHHHHHH-HHHHHCCceEEE--eCCHHHHHHHHh--hCcEEEECchhc---chHHHHHHHhccCCeEEe
Confidence 44544543 345678888775 456666665554 478887643211 222344445556777765
No 409
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=30.91 E-value=1.6e+02 Score=23.49 Aligned_cols=106 Identities=22% Similarity=0.334 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCcEEE--EeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCC
Q 015161 219 DIEVLRAIRAVHPDSSFI--LDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADE 296 (412)
Q Consensus 219 D~~~v~avr~~~~~~~l~--vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dE 296 (412)
-...+.++++..++..+. +|.+ ++.+.++ .+++++. .+ .|++.+-.- ...++=+....
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~----~~~~~~~---~~~~~~~--~~------~~~~~ll~~-----~~~D~V~I~tp 71 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPD----PERAEAF---AEKYGIP--VY------TDLEELLAD-----EDVDAVIIATP 71 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSS----HHHHHHH---HHHTTSE--EE------SSHHHHHHH-----TTESEEEEESS
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCC----HHHHHHH---HHHhccc--ch------hHHHHHHHh-----hcCCEEEEecC
Confidence 344566777766666553 4544 4444334 4455652 22 234333221 23444444444
Q ss_pred CCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015161 297 SCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 297 s~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~ 345 (412)
.-...+-+..+++.| .+++.=||.-..+.++.++.++|+++|..++++
T Consensus 72 ~~~h~~~~~~~l~~g-~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 72 PSSHAEIAKKALEAG-KHVLVEKPLALTLEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp GGGHHHHHHHHHHTT-SEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE
T ss_pred CcchHHHHHHHHHcC-CEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEe
Confidence 444556678888887 489988887666999999999999999999875
No 410
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=30.83 E-value=5.4e+02 Score=25.45 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCC--CEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCce------
Q 015161 194 AELASKYRKQGF--TTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVL------ 264 (412)
Q Consensus 194 ~~~~~~~~~~Gf--~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~------ 264 (412)
.+.+..+++.|. ..+=+... ..-+.-++.++.+|+..|...++. .|-. +.+.|.... +.|..-..
T Consensus 96 ~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~-GnV~-t~e~a~~l~----~aGad~I~V~~G~G 169 (321)
T TIGR01306 96 YEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIA-GNVG-TPEAVRELE----NAGADATKVGIGPG 169 (321)
T ss_pred HHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEE-ecCC-CHHHHHHHH----HcCcCEEEECCCCC
Confidence 456667777774 55555553 222455667888888877654443 4432 666665444 34432111
Q ss_pred ------ee--cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 265 ------FE--QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 265 ------iE--eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
++ ...+...+..+.++++ ...+||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 170 ~~~~tr~~~g~g~~~~~l~ai~ev~~----a~~~pVIadGGIr~~~Di~KALa~G-Ad~Vmig 227 (321)
T TIGR01306 170 KVCITKIKTGFGTGGWQLAALRWCAK----AARKPIIADGGIRTHGDIAKSIRFG-ASMVMIG 227 (321)
T ss_pred ccccceeeeccCCCchHHHHHHHHHH----hcCCeEEEECCcCcHHHHHHHHHcC-CCEEeec
Confidence 12 1222223445565553 4579999999999999999999987 5777654
No 411
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.74 E-value=5.6e+02 Score=25.67 Aligned_cols=144 Identities=15% Similarity=0.156 Sum_probs=73.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCEEe---EecC------CCh-hHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH
Q 015161 186 PIVSPAEAAELASKYRKQGFTTLK---LKVG------KNL-KEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL 255 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~Gf~~~K---iKvG------~~~-~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l 255 (412)
.+.+.+++.+.|+.+.+.|.+.++ +|-- ..+ ++-++.++++++.. ++.+.-+....-+.+. +..+
T Consensus 110 sIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~-Gl~~~tev~d~~~v~~----~~~~ 184 (352)
T PRK13396 110 SVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREAT-GLGIITEVMDAADLEK----IAEV 184 (352)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHc-CCcEEEeeCCHHHHHH----HHhh
Confidence 356788888999998888887776 1110 011 23344444444432 3445554443333332 2222
Q ss_pred HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCC-CHHHHHHHHH----cCCCCEEEecCCC---C-c--
Q 015161 256 YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCR-SLDDVKKIVK----GNLADVINIKLAK---V-G-- 324 (412)
Q Consensus 256 ~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~-~~~~~~~~i~----~~a~d~v~ik~~~---~-G-- 324 (412)
- ++ ++|=- ..-.+++-+.++. +++.||.+---.. +.+++..+++ .|.-+++.+.-.- . +
T Consensus 185 ~--d~--lqIga-~~~~n~~LL~~va-----~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~ 254 (352)
T PRK13396 185 A--DV--IQVGA-RNMQNFSLLKKVG-----AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT 254 (352)
T ss_pred C--Ce--EEECc-ccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC
Confidence 1 11 12211 1123455555554 5788998876655 7777655443 4544565554311 1 2
Q ss_pred --HHHHHHHHHHHHHcCCcEEE
Q 015161 325 --VLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 325 --it~~l~i~~~A~~~gi~~~~ 344 (412)
......+..+-+..++++++
T Consensus 255 ~~~~dl~ai~~lk~~~~lPVi~ 276 (352)
T PRK13396 255 RNTLDLSVIPVLRSLTHLPIMI 276 (352)
T ss_pred CCCcCHHHHHHHHHhhCCCEEE
Confidence 11233455555556888865
No 412
>PRK08444 hypothetical protein; Provisional
Probab=30.40 E-value=3.9e+02 Score=26.73 Aligned_cols=29 Identities=21% Similarity=-0.001 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHHHHHcCCcEEEccCc
Q 015161 320 LAKVGVLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 320 ~~~~Git~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+.|.--.+++++...|++.|+++..+.++
T Consensus 183 p~k~~~~~~~~i~~~a~~~Gi~~~sg~l~ 211 (353)
T PRK08444 183 KGKVSSERWLEIHKYWHKKGKMSNATMLF 211 (353)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 33443567899999999999998655443
No 413
>PLN02591 tryptophan synthase
Probab=30.34 E-value=4.8e+02 Score=24.72 Aligned_cols=57 Identities=9% Similarity=0.205 Sum_probs=35.9
Q ss_pred hcccCCeEE--eCCC---CCCHHHHHHHH-HcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 285 KDKFGVSVA--ADES---CRSLDDVKKIV-KGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 285 ~~~~~ipIa--~dEs---~~~~~~~~~~i-~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
|++..+|+. .--+ -++.+.|.+.. +.|.-.++.+|+. +.+.-++...|+++|+..++
T Consensus 74 r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP---~ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 74 APQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLP---LEETEALRAEAAKNGIELVL 136 (250)
T ss_pred hcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCC---HHHHHHHHHHHHHcCCeEEE
Confidence 345667743 2222 12455554444 5565555667764 47788899999999999865
No 414
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=30.06 E-value=5.2e+02 Score=25.03 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEEe-----CCCCCC-HHHH-HHHHHHHHcCCCCC
Q 015161 191 AEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFILD-----ANEGYK-PQEA-VEVLEKLYEMGVTP 262 (412)
Q Consensus 191 ~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~vD-----aN~~~~-~~~A-~~~~~~l~~~~l~~ 262 (412)
+...+.+..+.+.||+.|..-.--. .....=++|++.+ +.-.|.+. .|.+++ ...| -+-+++|.---+.+
T Consensus 28 ~~~~~av~~Al~~Gyr~IDTA~~Yg--nE~~VG~aI~~s~v~ReelFittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDL 105 (280)
T COG0656 28 EWAVRAVRAALELGYRLIDTAEIYG--NEEEVGEAIKESGVPREELFITTKVWPSDLGYDETLKALEASLKRLGLDYVDL 105 (280)
T ss_pred hhHHHHHHHHHHhCcceEecHhHhc--CHHHHHHHHHhcCCCHHHeEEEeecCCccCCcchHHHHHHHHHHHhCCCceeE
Confidence 3367777888889999998543211 1222225666643 33334333 333443 2222 22333333211223
Q ss_pred ceeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC--CCEEEecCCCCcHHHHHHHHHH
Q 015161 263 VLFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL--ADVINIKLAKVGVLGALEIIEV 334 (412)
Q Consensus 263 ~~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a--~d~v~ik~~~~Git~~l~i~~~ 334 (412)
+.|=.|.+. +-|..|.++.+ .|.-=+.|=|-++..++.++++... ..+-|+...- ...-.++..+
T Consensus 106 yLiHwP~~~~~~~~~etw~alE~l~~-----~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp--~~~q~el~~~ 178 (280)
T COG0656 106 YLIHWPVPNKYVVIEETWKALEELVD-----EGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHP--YLRQPELLPF 178 (280)
T ss_pred EEECCCCCccCccHHHHHHHHHHHHh-----cCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEecc--CCCcHHHHHH
Confidence 577888763 44555555543 3544466778899999999997532 3445554332 2334458999
Q ss_pred HHHcCCcEEEccCcc
Q 015161 335 VRASGLNLMIGGMVE 349 (412)
Q Consensus 335 A~~~gi~~~~~~~~e 349 (412)
|+++||.+...+.++
T Consensus 179 ~~~~gI~v~AysPL~ 193 (280)
T COG0656 179 CQRHGIAVEAYSPLA 193 (280)
T ss_pred HHHcCCEEEEECCcc
Confidence 999999999877664
No 415
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.91 E-value=4.3e+02 Score=24.04 Aligned_cols=145 Identities=20% Similarity=0.301 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEE----EeCCC--CC-CHHHHHHHHHHHHcCC
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFI----LDANE--GY-KPQEAVEVLEKLYEMG 259 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~----vDaN~--~~-~~~~A~~~~~~l~~~~ 259 (412)
+.+.....+.++.+.+.|.+.+-+ +. .+.++.+|+. .++.+. -|... -+ ++ ..+.++.+.+.|
T Consensus 23 ~~~~~~i~~~a~~~~~~G~~~~~~--~~-----~~~~~~i~~~-~~iPil~~~~~~~~~~~~~ig~--~~~~~~~a~~aG 92 (219)
T cd04729 23 LHSPEIMAAMALAAVQGGAVGIRA--NG-----VEDIRAIRAR-VDLPIIGLIKRDYPDSEVYITP--TIEEVDALAAAG 92 (219)
T ss_pred cCcHHHHHHHHHHHHHCCCeEEEc--CC-----HHHHHHHHHh-CCCCEEEEEecCCCCCCceeCC--CHHHHHHHHHcC
Confidence 456677788888899999987653 21 2344455543 233332 13211 00 11 123455666666
Q ss_pred CCCceeecCC---CC-CCHHH-HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC--------CCcHH
Q 015161 260 VTPVLFEQPV---HR-DDWEG-LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLA--------KVGVL 326 (412)
Q Consensus 260 l~~~~iEeP~---~~-~d~~~-~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~--------~~Git 326 (412)
.....+--+. +. +..+. .++++ +..++|+.. .+.+..+...+.+.| +|++.+... ..+ .
T Consensus 93 ad~I~~~~~~~~~p~~~~~~~~i~~~~----~~g~~~iiv--~v~t~~ea~~a~~~G-~d~i~~~~~g~t~~~~~~~~-~ 164 (219)
T cd04729 93 ADIIALDATDRPRPDGETLAELIKRIH----EEYNCLLMA--DISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTED-P 164 (219)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHH----HHhCCeEEE--ECCCHHHHHHHHHcC-CCEEEccCccccccccCCCC-C
Confidence 5312222222 11 12322 22333 222488776 457888888888877 788854321 111 1
Q ss_pred HHHHHHHHHHHcCCcEEEccCcc
Q 015161 327 GALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
..--+.++.+..+++++..+-+.
T Consensus 165 ~~~~l~~i~~~~~ipvia~GGI~ 187 (219)
T cd04729 165 DFELLKELRKALGIPVIAEGRIN 187 (219)
T ss_pred CHHHHHHHHHhcCCCEEEeCCCC
Confidence 11223344455589998866543
No 416
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=29.91 E-value=4.8e+02 Score=24.66 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=35.2
Q ss_pred cCCeEEeCCCCCCH------HHH-HHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 288 FGVSVAADESCRSL------DDV-KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 288 ~~ipIa~dEs~~~~------~~~-~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
..+|+. --+.+|+ +.| .++.+.|.-.++.+|.. +.+..++...|+++|+...+=....|+
T Consensus 86 ~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp---~ee~~~~~~~~~~~gl~~i~lv~P~T~ 152 (256)
T TIGR00262 86 PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP---LEESGDLVEAAKKHGVKPIFLVAPNAD 152 (256)
T ss_pred CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC---hHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 567764 3334444 554 34445564444666653 356778888999999886643333343
No 417
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=29.90 E-value=5.6e+02 Score=25.38 Aligned_cols=124 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred eeecCCCHHHHHHHHHHHHHc-CCCEEeEecCCC----hhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 015161 183 ITIPIVSPAEAAELASKYRKQ-GFTTLKLKVGKN----LKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLY 256 (412)
Q Consensus 183 ~~i~~~~~~~~~~~~~~~~~~-Gf~~~KiKvG~~----~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~ 256 (412)
.|.+..+.+|+...++-.++. |-.-+|+.|-.+ +.+..+.+++.++. -.++..+.=++ =++. .+++++
T Consensus 142 NTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~--~d~~----~a~~l~ 215 (326)
T PRK11840 142 NTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCS--DDPI----AAKRLE 215 (326)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeC--CCHH----HHHHHH
Confidence 356778888876665555554 678899987521 22345566676665 23444432111 1344 445566
Q ss_pred cCCCCCceeec---CCC----CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 257 EMGVTPVLFEQ---PVH----RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 257 ~~~l~~~~iEe---P~~----~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+.+. .-+|- |+- -.+.+.++.+.+ ..++||..|=-+.+..|...+++.| +|.+-+-
T Consensus 216 ~~g~--~avmPl~~pIGsg~gv~~p~~i~~~~e----~~~vpVivdAGIg~~sda~~AmelG-adgVL~n 278 (326)
T PRK11840 216 DAGA--VAVMPLGAPIGSGLGIQNPYTIRLIVE----GATVPVLVDAGVGTASDAAVAMELG-CDGVLMN 278 (326)
T ss_pred hcCC--EEEeeccccccCCCCCCCHHHHHHHHH----cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEc
Confidence 6664 24442 111 125666666654 4679999999999999999999998 5776543
No 418
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=29.79 E-value=3.6e+02 Score=25.65 Aligned_cols=71 Identities=27% Similarity=0.337 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCC-CCC--CHHHHHHHHHHH-HcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDAN-EGY--KPQEAVEVLEKL-YEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN-~~~--~~~~A~~~~~~l-~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 291 (412)
+++-+..+++|++.-+..-+.+|.- ++| +++++++...++ ++.|..-.-||+-. +...+++. ++ +.++|
T Consensus 57 l~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~~-----~~~~~I~a-l~-~agip 129 (254)
T cd06557 57 LDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGGA-----EVAETIRA-LV-DAGIP 129 (254)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCcH-----HHHHHHHH-HH-HcCCC
Confidence 4555667777777655445889997 667 488988876554 54776545888841 22333332 22 45788
Q ss_pred EE
Q 015161 292 VA 293 (412)
Q Consensus 292 Ia 293 (412)
++
T Consensus 130 V~ 131 (254)
T cd06557 130 VM 131 (254)
T ss_pred ee
Confidence 87
No 419
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=29.69 E-value=5e+02 Score=24.80 Aligned_cols=148 Identities=10% Similarity=0.121 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHc-CCCEEeEecC----C--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 189 SPAEAAELASKYRKQ-GFTTLKLKVG----K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~-Gf~~~KiKvG----~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
+.+.+.+.++.+.+. |.+.+=+--. . ..++=.+.++.+.+. ...+.+++=+. ..+.++++++++..++.|.
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~-~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVG-SLNLKESQELAKHAEELGY 97 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccC-CCCHHHHHHHHHHHHHcCC
Confidence 456677788888888 8887654322 1 222333345555554 45677777433 3677889999998888764
Q ss_pred CCceeecCCC--CCC---HHHHHHhHHHhhccc-CCeEEeCCC------CCCHHHHHHHHHcCCCCEEEecCCCCc-HHH
Q 015161 261 TPVLFEQPVH--RDD---WEGLGHVSHIAKDKF-GVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLG 327 (412)
Q Consensus 261 ~~~~iEeP~~--~~d---~~~~~~l~~~~~~~~-~ipIa~dEs------~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~ 327 (412)
.-..+=-|.- +.+ .+-++++. +.+ ++||..=.. ..+++.+.++.+ .-+++-+|-+- | +..
T Consensus 98 d~v~~~~P~y~~~~~~~i~~~~~~v~----~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~~--~pnivgiK~s~-~d~~~ 170 (288)
T cd00954 98 DAISAITPFYYKFSFEEIKDYYREII----AAAASLPMIIYHIPALTGVNLTLEQFLELFE--IPNVIGVKFTA-TDLYD 170 (288)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHH----HhcCCCCEEEEeCccccCCCCCHHHHHHHhc--CCCEEEEEeCC-CCHHH
Confidence 3111112211 111 22233343 356 688875321 224556677764 35778888763 5 555
Q ss_pred HHHHHHHHHHcCCcEEEc
Q 015161 328 ALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 328 ~l~i~~~A~~~gi~~~~~ 345 (412)
..++.+... .++.+..|
T Consensus 171 ~~~~~~~~~-~~~~v~~G 187 (288)
T cd00954 171 LERIRAASP-EDKLVLNG 187 (288)
T ss_pred HHHHHHhCC-CCcEEEEe
Confidence 544432221 24555544
No 420
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.65 E-value=5.8e+02 Score=25.47 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=78.2
Q ss_pred HHHHHHHHHcC--CCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceee----
Q 015161 194 AELASKYRKQG--FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFE---- 266 (412)
Q Consensus 194 ~~~~~~~~~~G--f~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iE---- 266 (412)
.+.++.+.+.| ...+=+.+. ..-+.-++.++.+|+.+|+..++ +..--|+++|...+.. +..-.++=
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~vi--aGNV~T~e~a~~Li~a----GAD~ikVgiGpG 182 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIM--AGNVVTGEMVEELILS----GADIVKVGIGPG 182 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEE--EecccCHHHHHHHHHc----CCCEEEEcccCC
Confidence 46666777764 888888876 33345677788999988886655 3335677877655543 32211221
Q ss_pred --------cCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 267 --------QPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 267 --------eP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
..+..-.+..+.+.++..+ ..++||.+|--+.+..|+.+++..| +|.+.+-
T Consensus 183 SicttR~~~Gvg~pqltAv~~~a~aa~-~~~v~VIaDGGIr~~gDI~KALA~G-Ad~VMlG 241 (343)
T TIGR01305 183 SVCTTRTKTGVGYPQLSAVIECADAAH-GLKGHIISDGGCTCPGDVAKAFGAG-ADFVMLG 241 (343)
T ss_pred CcccCceeCCCCcCHHHHHHHHHHHhc-cCCCeEEEcCCcCchhHHHHHHHcC-CCEEEEC
Confidence 2222235666777665433 4589999999999999999999988 4777654
No 421
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.61 E-value=4.7e+02 Score=24.41 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCCceeecCCC
Q 015161 245 PQEAVEVLEKLYEMGVTPVLFEQPVH 270 (412)
Q Consensus 245 ~~~A~~~~~~l~~~~l~~~~iEeP~~ 270 (412)
.++..++++.+.++++.+.++=-|..
T Consensus 115 ~ee~~~~~~~~~~~g~~~i~~i~P~T 140 (242)
T cd04724 115 PEEAEEFREAAKEYGLDLIFLVAPTT 140 (242)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45666777777777765455555544
No 422
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.59 E-value=2.1e+02 Score=26.66 Aligned_cols=63 Identities=3% Similarity=0.035 Sum_probs=38.9
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcE
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNL 342 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~ 342 (412)
+++-++++++ .+.+||..|=-+.+.+++++++..|+ +-+.+.... +...--+.++++.+|=++
T Consensus 64 n~~~I~~i~~----~~~~pi~vGGGIrs~e~v~~~l~~Ga-~kvvigt~a--~~~~~~l~~~~~~fg~~i 126 (234)
T PRK13587 64 EFDYIKSLRR----LTTKDIEVGGGIRTKSQIMDYFAAGI-NYCIVGTKG--IQDTDWLKEMAHTFPGRI 126 (234)
T ss_pred hHHHHHHHHh----hcCCeEEEcCCcCCHHHHHHHHHCCC-CEEEECchH--hcCHHHHHHHHHHcCCCE
Confidence 3555666653 56789999888999999999998874 444332211 223333556666665443
No 423
>PRK14057 epimerase; Provisional
Probab=29.44 E-value=4.8e+02 Score=24.83 Aligned_cols=158 Identities=9% Similarity=0.030 Sum_probs=88.2
Q ss_pred eecCCCHHHHHHHHHHHHHcCCCEEeEecC-----CChhHHHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 184 TIPIVSPAEAAELASKYRKQGFTTLKLKVG-----KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 184 ~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG-----~~~~~D~~~v~avr~~~~-~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
|+-..+...+.++++++.+.|...+-+.|- +++.--...++++|+..| |+.||+. ++++ +++.+.+
T Consensus 25 Sil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~~~p~DvHLMV~-----~P~~---~i~~~~~ 96 (254)
T PRK14057 25 GILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVA-----DQWT---AAQACVK 96 (254)
T ss_pred ehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhccCCCeeEEeeeC-----CHHH---HHHHHHH
Confidence 443446677888889988889888888774 344444566777766544 8888886 3554 5555655
Q ss_pred CCCCC--ceeecCCCCCCH-HHHHHhHHHhhcccCC-----------eEEeCCCCCCHHHHHHHHHcCCCC---EEEecC
Q 015161 258 MGVTP--VLFEQPVHRDDW-EGLGHVSHIAKDKFGV-----------SVAADESCRSLDDVKKIVKGNLAD---VINIKL 320 (412)
Q Consensus 258 ~~l~~--~~iEeP~~~~d~-~~~~~l~~~~~~~~~i-----------pIa~dEs~~~~~~~~~~i~~~a~d---~v~ik~ 320 (412)
.+... .-+|-. .+. ..+.++++ .++ =|+..=. +..+.+..++. .+| +..+.|
T Consensus 97 aGad~It~H~Ea~---~~~~~~l~~Ir~-----~G~k~~~~~~~~kaGlAlnP~-Tp~e~i~~~l~--~vD~VLvMtV~P 165 (254)
T PRK14057 97 AGAHCITLQAEGD---IHLHHTLSWLGQ-----QTVPVIGGEMPVIRGISLCPA-TPLDVIIPILS--DVEVIQLLAVNP 165 (254)
T ss_pred hCCCEEEEeeccc---cCHHHHHHHHHH-----cCCCcccccccceeEEEECCC-CCHHHHHHHHH--hCCEEEEEEECC
Confidence 55321 234532 222 33444442 233 3344322 56677777775 355 456788
Q ss_pred CCCc---HHHHH-H---HHHHHHHcCCcEEEccCcchHHHHHHHHHHHc
Q 015161 321 AKVG---VLGAL-E---IIEVVRASGLNLMIGGMVETRLAMGFAGHLSA 362 (412)
Q Consensus 321 ~~~G---it~~l-~---i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaa 362 (412)
...| +..++ | +.++-.++|..+.+. ++++|+......+..
T Consensus 166 GfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI~~~ti~~l~~ 212 (254)
T PRK14057 166 GYGSKMRSSDLHERVAQLLCLLGDKREGKIIV--IDGSLTQDQLPSLIA 212 (254)
T ss_pred CCCchhccHHHHHHHHHHHHHHHhcCCCceEE--EECCCCHHHHHHHHH
Confidence 8877 33332 3 334445666553221 134444444444443
No 424
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=29.42 E-value=4e+02 Score=25.47 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHhCCCcEEEEeCC-CCC--CHHHHHHHHHH-HHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCe
Q 015161 216 LKEDIEVLRAIRAVHPDSSFILDAN-EGY--KPQEAVEVLEK-LYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVS 291 (412)
Q Consensus 216 ~~~D~~~v~avr~~~~~~~l~vDaN-~~~--~~~~A~~~~~~-l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ip 291 (412)
+++-+..+++|++.-+...+.+|.- ++| +++++++...+ +++.|..-.-||+- .+-.+-.+.++ +.++|
T Consensus 60 l~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg--~~~~~~I~al~-----~agIp 132 (264)
T PRK00311 60 LDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG--EEVAETIKRLV-----ERGIP 132 (264)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc--HHHHHHHHHHH-----HCCCC
Confidence 4555667777777655545889986 667 67887776544 45466544588873 11122233333 35899
Q ss_pred EE
Q 015161 292 VA 293 (412)
Q Consensus 292 Ia 293 (412)
|+
T Consensus 133 V~ 134 (264)
T PRK00311 133 VM 134 (264)
T ss_pred Ee
Confidence 97
No 425
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.27 E-value=5.1e+02 Score=24.67 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-CCcEEEE--eCC-CCCC-HHHHHHHHHHHHcCCCCCc
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-PDSSFIL--DAN-EGYK-PQEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~~~~l~v--DaN-~~~~-~~~A~~~~~~l~~~~l~~~ 263 (412)
+.++..+.++.+.+.|++.+-+-.+..-..|.+.++.+++.. ++.++.. .++ ..+. +++ +-++.+.+.++...
T Consensus 18 s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~a~~~g~~~i 95 (273)
T cd07941 18 SVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEED--PNLQALLEAGTPVV 95 (273)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccch--HHHHHHHhCCCCEE
Confidence 567778888888999999998854322356778888888763 3444433 222 1122 111 23444555665433
Q ss_pred eeecCCCC------------CCHHHHHHhHHHhhcccCCeEEe-CC-----CCCCHHHHHHH----HHcCCCCEEEecCC
Q 015161 264 LFEQPVHR------------DDWEGLGHVSHIAKDKFGVSVAA-DE-----SCRSLDDVKKI----VKGNLADVINIKLA 321 (412)
Q Consensus 264 ~iEeP~~~------------~d~~~~~~l~~~~~~~~~ipIa~-dE-----s~~~~~~~~~~----i~~~a~d~v~ik~~ 321 (412)
.+--|.+. +.++...++.+..+ ..+..+.. -| +-.+++.+.++ .+.| ++.+.+.=+
T Consensus 96 ~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak-~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g-~~~i~l~DT 173 (273)
T cd07941 96 TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLK-SHGREVIFDAEHFFDGYKANPEYALATLKAAAEAG-ADWLVLCDT 173 (273)
T ss_pred EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHH-HcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCC-CCEEEEecC
Confidence 44444331 12233333333333 34666644 12 23445544433 4455 455544322
Q ss_pred CCc---HHHHHHHHHHHH-HcC-CcEEEccCcchHHHHHHHHHHHccCCCCceec
Q 015161 322 KVG---VLGALEIIEVVR-ASG-LNLMIGGMVETRLAMGFAGHLSAGLGCFKFID 371 (412)
Q Consensus 322 ~~G---it~~l~i~~~A~-~~g-i~~~~~~~~es~i~~~a~~hlaaa~~~~~~~e 371 (412)
+| .....++....+ ..+ +++.+|+... .|++.+-.++|-...+.++|
T Consensus 174 -~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd--~Gla~An~laA~~aGa~~id 225 (273)
T cd07941 174 -NGGTLPHEIAEIVKEVRERLPGVPLGIHAHND--SGLAVANSLAAVEAGATQVQ 225 (273)
T ss_pred -CCCCCHHHHHHHHHHHHHhCCCCeeEEEecCC--CCcHHHHHHHHHHcCCCEEE
Confidence 35 334555555444 345 7777777533 34444444544333445555
No 426
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=29.14 E-value=2.9e+02 Score=27.11 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHcCCCCCcee---ecCCCCCCHHHHHHhHHHhhccc-CCe-----------EEeCCCCCCHHHHHHH
Q 015161 243 YKPQEAVEVLEKLYEMGVTPVLF---EQPVHRDDWEGLGHVSHIAKDKF-GVS-----------VAADESCRSLDDVKKI 307 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~l~~~~i---EeP~~~~d~~~~~~l~~~~~~~~-~ip-----------Ia~dEs~~~~~~~~~~ 307 (412)
.++++.++.++.+.+.++.-..+ ++| ..+.+.+.++.+.++++. ++. ++....+.+.+.++++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p--~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~~L 149 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNP--DLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLERL 149 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCC--CCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHHHH
Q ss_pred HHcCCCCEEEec--------------CCCCcHHHHHHHHHHHHHcCCcEEEccCcc
Q 015161 308 VKGNLADVINIK--------------LAKVGVLGALEIIEVVRASGLNLMIGGMVE 349 (412)
Q Consensus 308 i~~~a~d~v~ik--------------~~~~Git~~l~i~~~A~~~gi~~~~~~~~e 349 (412)
-++| ++.+.-. +.++.....++.++.|++.|+++..+.+++
T Consensus 150 k~aG-~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiG 204 (340)
T TIGR03699 150 KEAG-LDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFG 204 (340)
T ss_pred HHcC-CCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEee
No 427
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=28.87 E-value=2.9e+02 Score=26.31 Aligned_cols=95 Identities=16% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHcCC---CCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 243 YKPQEAVEVLEKLYEMG---VTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 243 ~~~~~A~~~~~~l~~~~---l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
+++.+ +++..+++| +. +.-|++.=...++.++.+++ .+.+||---+-+.++.++...-..| .|.+.+=
T Consensus 66 ~dp~~---ia~~Ye~~GAa~iS-VLTd~~~F~Gs~e~L~~v~~----~v~~PvL~KDFiiD~yQI~~Ar~~G-ADavLLI 136 (254)
T COG0134 66 FDPVE---IAKAYEEGGAAAIS-VLTDPKYFQGSFEDLRAVRA----AVDLPVLRKDFIIDPYQIYEARAAG-ADAVLLI 136 (254)
T ss_pred CCHHH---HHHHHHHhCCeEEE-EecCccccCCCHHHHHHHHH----hcCCCeeeccCCCCHHHHHHHHHcC-cccHHHH
Confidence 44554 555566654 32 34566665677888877764 6899999988999999998887776 5776553
Q ss_pred CCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015161 320 LAKVGVLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 320 ~~~~Git~~l~i~~~A~~~gi~~~~~~ 346 (412)
+.-.+=.+..++.+.|+++|+.+.+-.
T Consensus 137 ~~~L~~~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 137 VAALDDEQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHhcCHHHHHHHHHHHHHcCCeeEEEE
Confidence 333333457889999999999986643
No 428
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.71 E-value=2.6e+02 Score=27.54 Aligned_cols=60 Identities=20% Similarity=0.219 Sum_probs=43.9
Q ss_pred HHHHHHHHHcCCCEEeEecCC-----ChhHHHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHHHHHH
Q 015161 194 AELASKYRKQGFTTLKLKVGK-----NLKEDIEVLRAIRAVHPDSSFILDANEG-YKPQEAVEVLEKL 255 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-----~~~~D~~~v~avr~~~~~~~l~vDaN~~-~~~~~A~~~~~~l 255 (412)
.+.++...+.|-..+=++.-. .-..|.+.|..+++..++ +-|-+|+. +++++|.+.++.-
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~NGdI~s~~~a~~~l~~t 220 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIANGDIKSLEDAKEMLEYT 220 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeCCCcCCHHHHHHHHHhh
Confidence 445555566788888887531 112688899999998766 77778988 7899999888763
No 429
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=28.11 E-value=5.3e+02 Score=24.54 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEec--CC----ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKV--GK----NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKv--G~----~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
+.+.+.+.++.+.+.|.+.+=+-- |. ..++=.+.++.+.+. .+++.+++= -++.+.++++++++..++.|..
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~g-v~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAG-VGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEE-EESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEec-CcchhHHHHHHHHHHHhhcCce
Confidence 456678888889999998876543 21 122333445666664 567888773 3455799999999999998875
Q ss_pred CceeecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCC------CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHH
Q 015161 262 PVLFEQPVH-RDDWEGLGHVSHIAKDKFGVSVAADES------CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIE 333 (412)
Q Consensus 262 ~~~iEeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs------~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~ 333 (412)
-..+--|.- .-+.+++.+.-+.+...+++||..--. ..+.+.+.++.+ .-+++-+|.+- | +....++..
T Consensus 99 ~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~--~~nv~giK~s~-~~~~~~~~~~~ 175 (289)
T PF00701_consen 99 AVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK--IPNVVGIKDSS-GDLERLIQLLR 175 (289)
T ss_dssp EEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT--STTEEEEEESS-SBHHHHHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc--CCcEEEEEcCc-hhHHHHHHHhh
Confidence 445666643 122233322222223468899976432 234556777776 45788888654 5 655554443
Q ss_pred HHHHcCCcEEEc
Q 015161 334 VVRASGLNLMIG 345 (412)
Q Consensus 334 ~A~~~gi~~~~~ 345 (412)
.. ..++.++.|
T Consensus 176 ~~-~~~~~v~~G 186 (289)
T PF00701_consen 176 AV-GPDFSVFCG 186 (289)
T ss_dssp HS-STTSEEEES
T ss_pred hc-ccCeeeecc
Confidence 32 246666665
No 430
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.08 E-value=4.6e+02 Score=25.91 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEeEecCC-------------ChhHHHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHHHcCC
Q 015161 194 AELASKYRKQGFTTLKLKVGK-------------NLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYEMG 259 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~KiKvG~-------------~~~~D~~~v~avr~~~~-~~~l~vDaN~~~~~~~A~~~~~~l~~~~ 259 (412)
...+.++++.|++.+-+-+.. .+++-++-+++..++|- .++|=...-.+.+.+|...+++-..+.+
T Consensus 101 ~~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~ 180 (322)
T COG2896 101 ARRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERG 180 (322)
T ss_pred HHHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcC
Confidence 445555666666666655540 11222233344444432 3555555555666666666666666655
Q ss_pred CCCceee
Q 015161 260 VTPVLFE 266 (412)
Q Consensus 260 l~~~~iE 266 (412)
..+.+||
T Consensus 181 ~~lrfIE 187 (322)
T COG2896 181 AQLRFIE 187 (322)
T ss_pred CceEEEE
Confidence 4444666
No 431
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=28.04 E-value=3.9e+02 Score=26.33 Aligned_cols=71 Identities=28% Similarity=0.346 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCCh----hHHHHHHHHHHHhCCCcEEEEeC---------CCCCCHHHHHHHHHH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFILDA---------NEGYKPQEAVEVLEK 254 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~D~~~v~avr~~~~~~~l~vDa---------N~~~~~~~A~~~~~~ 254 (412)
.+++++.+.++++.+.|.+.|-+--|.++ +.-.+.++.|++.++++.+..-. +.+...+ +.+++
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~---e~l~~ 146 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVE---EALKR 146 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHH---HHHHH
Confidence 48899999999999999999998855322 22346678888888877654321 2223223 35556
Q ss_pred HHcCCCC
Q 015161 255 LYEMGVT 261 (412)
Q Consensus 255 l~~~~l~ 261 (412)
|.+.|+.
T Consensus 147 LkeAGl~ 153 (343)
T TIGR03551 147 LKEAGLD 153 (343)
T ss_pred HHHhCcc
Confidence 6666764
No 432
>COG2403 Predicted GTPase [General function prediction only]
Probab=27.96 E-value=1.7e+02 Score=29.72 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=50.9
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcch
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVET 350 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es 350 (412)
..++||-.+++ .+++.++++...+|.+.++.+-+-...-.+++...-+.|..++..+..++
T Consensus 60 p~Gvpi~~~k~---~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et 120 (449)
T COG2403 60 PLGVPILPEKD---YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKET 120 (449)
T ss_pred cCCcccccccc---HHHHHHHHHHcCCCeEEEEcccCCHHHHHHHHHHHHhCCceeEEeCccHH
Confidence 45899998887 78899999999999999999887777788999999999999887655443
No 433
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=27.85 E-value=2.2e+02 Score=28.00 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHcCCCEEeEecCC--------ChhHHHHHHHHHHHhC--CCcEEEEeCCCCCCHHHHHHHHH
Q 015161 190 PAEAAELASKYRKQGFTTLKLKVGK--------NLKEDIEVLRAIRAVH--PDSSFILDANEGYKPQEAVEVLE 253 (412)
Q Consensus 190 ~~~~~~~~~~~~~~Gf~~~KiKvG~--------~~~~D~~~v~avr~~~--~~~~l~vDaN~~~~~~~A~~~~~ 253 (412)
.+.+....+++...||+ +..|. .-..|.+|.+.+.+++ +++++++.+-++|...+-+.++.
T Consensus 25 ~~~~~~a~~~L~~~G~~---v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs~rlLp~ld 95 (313)
T COG1619 25 TDALKRAIQRLENLGFE---VVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGSNRLLPYLD 95 (313)
T ss_pred HHHHHHHHHHHHHcCCE---EEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCChhhhhhhcc
Confidence 44455555667778864 44441 2246789999999984 78999999999999888776665
No 434
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=27.72 E-value=5.9e+02 Score=26.27 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCEEeEecC-CChhHHHHHHHHHHHhC-CCc-EEEEeCCCCCC-HHHHHHHHHHHH-----cCCCCCcee
Q 015161 195 ELASKYRKQGFTTLKLKVG-KNLKEDIEVLRAIRAVH-PDS-SFILDANEGYK-PQEAVEVLEKLY-----EMGVTPVLF 265 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-~~~~~D~~~v~avr~~~-~~~-~l~vDaN~~~~-~~~A~~~~~~l~-----~~~l~~~~i 265 (412)
...++..++|-..+.=+.| +.+++-++.++.+++.+ .|+ .+.+|.|.+-+ .++|.+.++.-. .+|
T Consensus 5 ~~l~~a~~~~~~~~Qpr~G~~~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~ln------ 78 (428)
T cd00245 5 KKLEKADKEGKLVVQPRAGFPLLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLN------ 78 (428)
T ss_pred HHHHHHHhcCCEeecCCCCCCCHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccC------
Confidence 3455667788888887778 57788899999999985 664 78999998765 566666655542 222
Q ss_pred ecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCC-------EEEecCCCC-c----HHHH---HH
Q 015161 266 EQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLAD-------VINIKLAKV-G----VLGA---LE 330 (412)
Q Consensus 266 EeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d-------~v~ik~~~~-G----it~~---l~ 330 (412)
==|+....++.+++|.. .++.||-.-=.-.+...+.+++-+...+ .+++...|. . |..+ -+
T Consensus 79 G~P~v~~g~~~~R~l~~----~~~~PlqvRhGt~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~wqy~~r 154 (428)
T cd00245 79 GFPIVNHGVKTCRKLLE----GVDFPVQVRHGTPDARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIENWQYCDR 154 (428)
T ss_pred CCCcccccHHHHHHHHH----hCCCCEeeccCCccHHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHHHHHHHH
Confidence 11777788888999875 5688884432334444444444322222 234444453 3 3444 34
Q ss_pred HHHHHHHcCCcEE
Q 015161 331 IIEVVRASGLNLM 343 (412)
Q Consensus 331 i~~~A~~~gi~~~ 343 (412)
++..=.++|+++-
T Consensus 155 l~~~y~e~gv~in 167 (428)
T cd00245 155 LVGFYEENGVPIN 167 (428)
T ss_pred HHHHHHhcCceec
Confidence 4555567888863
No 435
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=27.65 E-value=3.3e+02 Score=26.09 Aligned_cols=75 Identities=25% Similarity=0.325 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHHHHhCCCcEEEEeC-CCCC--CHHHHHHHHHHHH-cCCCCCceeecCCCCCCHHHHHHhHHHhhcccCC
Q 015161 215 NLKEDIEVLRAIRAVHPDSSFILDA-NEGY--KPQEAVEVLEKLY-EMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGV 290 (412)
Q Consensus 215 ~~~~D~~~v~avr~~~~~~~l~vDa-N~~~--~~~~A~~~~~~l~-~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~i 290 (412)
.+++-+...++||+.-++.-++.|- .++| +.++|++.+.++- +.+..-.-+|=-. +-.+-.+.|. +.+|
T Consensus 60 tld~mi~h~~aV~Rga~~~~vv~DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~--~~~~~i~~l~-----~~GI 132 (261)
T PF02548_consen 60 TLDEMIYHTKAVRRGAPNAFVVADMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGA--EIAETIKALV-----DAGI 132 (261)
T ss_dssp -HHHHHHHHHHHHHH-TSSEEEEE--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG--GGHHHHHHHH-----HTT-
T ss_pred CHHHHHHHHHHHHhcCCCceEEecCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccch--hHHHHHHHHH-----HCCC
Confidence 3566677789999988889999995 4777 7999999888864 4776556788533 3345566665 3599
Q ss_pred eEEeCC
Q 015161 291 SVAADE 296 (412)
Q Consensus 291 pIa~dE 296 (412)
||++.=
T Consensus 133 PV~gHi 138 (261)
T PF02548_consen 133 PVMGHI 138 (261)
T ss_dssp -EEEEE
T ss_pred cEEEEe
Confidence 999853
No 436
>PRK07360 FO synthase subunit 2; Reviewed
Probab=27.64 E-value=5.1e+02 Score=25.95 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=20.8
Q ss_pred CCcHHHHHHHHHHHHHcCCcEEEccCc
Q 015161 322 KVGVLGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 322 ~~Git~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
++-....+++++.|++.|+++..+.++
T Consensus 197 ~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 197 KIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred CCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 344567899999999999998666544
No 437
>PRK08444 hypothetical protein; Provisional
Probab=27.24 E-value=3.5e+02 Score=27.04 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCCh----hHHHHHHHHHHHhCCCcEEE
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNL----KEDIEVLRAIRAVHPDSSFI 236 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~----~~D~~~v~avr~~~~~~~l~ 236 (412)
.+++++.+.+++..+.|.+.|=+--|.++ +.=.+.++.|++.+|++.+-
T Consensus 80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~ 132 (353)
T PRK08444 80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVK 132 (353)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEe
Confidence 37899999999999999999999877333 33345678888778876553
No 438
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=27.18 E-value=4.3e+02 Score=25.87 Aligned_cols=75 Identities=17% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCCEEeEecC-------------CChhHHHHHHHHHHHhCC-CcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 195 ELASKYRKQGFTTLKLKVG-------------KNLKEDIEVLRAIRAVHP-DSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG-------------~~~~~D~~~v~avr~~~~-~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
+.++++.+.|...+-+-+. .++++-++.++.+++.+- .+.+..=...+.+.++..++++.+.+.++
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 3455666677777776654 123344445566666543 45443223445677888888888888887
Q ss_pred CCceeecCCC
Q 015161 261 TPVLFEQPVH 270 (412)
Q Consensus 261 ~~~~iEeP~~ 270 (412)
.+.++| .+|
T Consensus 185 ~~~~ie-~mP 193 (329)
T PRK13361 185 DIAFIE-EMP 193 (329)
T ss_pred eEEEEe-ccc
Confidence 644555 344
No 439
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=27.08 E-value=5.7e+02 Score=24.52 Aligned_cols=92 Identities=18% Similarity=0.230 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHH-cCCCEEeEecCCChhHHHHHHHHHHHhCCCcE---------EEEeCCCCC-----C---HHHHHH
Q 015161 189 SPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSS---------FILDANEGY-----K---PQEAVE 250 (412)
Q Consensus 189 ~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~---------l~vDaN~~~-----~---~~~A~~ 250 (412)
++++..+-+.++.+ .|-..+|+--| .+-.++++++.+.+-.+. .+.| ++| + .+++++
T Consensus 90 ~~e~a~~na~rl~~eaGa~aVkiEgg---~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~--ggy~~qgrt~~~a~~~i~ 164 (263)
T TIGR00222 90 TPEQALKNAARVMQETGANAVKLEGG---EWLVETVQMLTERGVPVVGHLGLTPQSVNIL--GGYKVQGKDEEAAKKLLE 164 (263)
T ss_pred CHHHHHHHHHHHHHHhCCeEEEEcCc---HhHHHHHHHHHHCCCCEEEecCCCceeEeec--CCeeecCCCHHHHHHHHH
Confidence 57887777777666 79999999866 344577788877642221 2333 323 3 346677
Q ss_pred HHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEE
Q 015161 251 VLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA 293 (412)
Q Consensus 251 ~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa 293 (412)
.++++++.|....++|-. +. +-.+++++ +.++|+.
T Consensus 165 ~A~a~e~AGA~~ivlE~v--p~--~~a~~It~----~l~iP~i 199 (263)
T TIGR00222 165 DALALEEAGAQLLVLECV--PV--ELAAKITE----ALAIPVI 199 (263)
T ss_pred HHHHHHHcCCCEEEEcCC--cH--HHHHHHHH----hCCCCEE
Confidence 888888988764466643 22 44566764 6778874
No 440
>PRK15108 biotin synthase; Provisional
Probab=26.59 E-value=6.4e+02 Score=24.98 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecC-CCh-hHHHH----HHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVG-KNL-KEDIE----VLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGV 260 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG-~~~-~~D~~----~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l 260 (412)
.+++++.+.++...+.|++.|=+-.+ .++ ..+.+ .++.+++.+ +.+. -.|+..+.+++.++-+. ++.+++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~--i~v~-~s~G~ls~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--LETC-MTLGTLSESQAQRLANAGLDYYNH 152 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCC--CEEE-EeCCcCCHHHHHHHHHcCCCEEee
Confidence 47899999999998999999855433 232 33333 455555433 4443 46888886655444333 332222
Q ss_pred C----CceeecCCCCCCHHHHHHhHHHhhc-----ccCCeEEeCCCCCCHHHH
Q 015161 261 T----PVLFEQPVHRDDWEGLGHVSHIAKD-----KFGVSVAADESCRSLDDV 304 (412)
Q Consensus 261 ~----~~~iEeP~~~~d~~~~~~l~~~~~~-----~~~ipIa~dEs~~~~~~~ 304 (412)
. +..+.+-++.++++..-+..+.+++ .+++-+..+|+..+.-+.
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~ 205 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGL 205 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHH
Confidence 1 1344555555565543333222221 123344557766554443
No 441
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.58 E-value=3.6e+02 Score=24.21 Aligned_cols=63 Identities=24% Similarity=0.343 Sum_probs=41.9
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-H-------HHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-V-------LGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-i-------t~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+.|+.|+.|.--.+...+..+... .+|++.+|...+- + .-...+..+|+..|+.++..+. |+.
T Consensus 144 ~~G~~ialddfg~~~~~~~~l~~l-~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV-e~~ 214 (241)
T smart00052 144 ELGVRIALDDFGTGYSSLSYLKRL-PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGV-ETP 214 (241)
T ss_pred HCCCEEEEeCCCCcHHHHHHHHhC-CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecC-CCH
Confidence 357788887755556666555544 4888888865442 2 1244578999999999988764 554
No 442
>PRK07360 FO synthase subunit 2; Reviewed
Probab=26.52 E-value=1.9e+02 Score=29.01 Aligned_cols=71 Identities=28% Similarity=0.368 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChh-----HHHHHHHHHHHhCCCcEEEE-eC--------CCCCCHHHHHHHHH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLK-----EDIEVLRAIRAVHPDSSFIL-DA--------NEGYKPQEAVEVLE 253 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~-----~D~~~v~avr~~~~~~~l~v-Da--------N~~~~~~~A~~~~~ 253 (412)
.+++++.+.++++.+.|.+.|-+--|.++. .=.+.++.+++.+|++.+-. -+ +.+...++ .++
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~e---~l~ 167 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYEE---VLK 167 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHHH---HHH
Confidence 378899999999999999999998663332 23456777777667655431 11 34455444 445
Q ss_pred HHHcCCCC
Q 015161 254 KLYEMGVT 261 (412)
Q Consensus 254 ~l~~~~l~ 261 (412)
+|.+.|+.
T Consensus 168 ~LkeAGld 175 (371)
T PRK07360 168 ALKDAGLD 175 (371)
T ss_pred HHHHcCCC
Confidence 56667764
No 443
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=26.46 E-value=5.3e+02 Score=24.00 Aligned_cols=113 Identities=15% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhC-C-CcEEEEeC-CC------CCCH--HHHHHHHHHHHcCCCCCc
Q 015161 195 ELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVH-P-DSSFILDA-NE------GYKP--QEAVEVLEKLYEMGVTPV 263 (412)
Q Consensus 195 ~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~-~-~~~l~vDa-N~------~~~~--~~A~~~~~~l~~~~l~~~ 263 (412)
+.++++.+.|...+ =+|...-.|.+.++.+.+.+ + .+-+.+|+ .+ +|.. ....+++++++++++. .
T Consensus 86 e~~~~~l~~Ga~kv--vigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~-~ 162 (232)
T PRK13586 86 EKAKRLLSLDVNAL--VFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELL-G 162 (232)
T ss_pred HHHHHHHHCCCCEE--EECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCC-E
Confidence 34566777787665 45643346778888888874 4 46788999 22 4632 2345677778877753 3
Q ss_pred eeecCCCC------CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEE
Q 015161 264 LFEQPVHR------DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVI 316 (412)
Q Consensus 264 ~iEeP~~~------~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v 316 (412)
+|=.-+.. .|++.++++++ ... |+.+.=-+.+.+|+.++.+.| ++.+
T Consensus 163 ii~tdI~~dGt~~G~d~el~~~~~~----~~~-~viasGGv~s~~Dl~~l~~~G-~~gv 215 (232)
T PRK13586 163 IIFTYISNEGTTKGIDYNVKDYARL----IRG-LKEYAGGVSSDADLEYLKNVG-FDYI 215 (232)
T ss_pred EEEecccccccCcCcCHHHHHHHHh----CCC-CEEEECCCCCHHHHHHHHHCC-CCEE
Confidence 33333332 35666666653 223 344444678888888887665 4443
No 444
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=26.42 E-value=1e+02 Score=31.18 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHcCCCCEEEecCCC-Cc--HH--HHHHHHHHHHHcCCcEEE
Q 015161 299 RSLDDVKKIVKGNLADVINIKLAK-VG--VL--GALEIIEVVRASGLNLMI 344 (412)
Q Consensus 299 ~~~~~~~~~i~~~a~d~v~ik~~~-~G--it--~~l~i~~~A~~~gi~~~~ 344 (412)
.++..++.+++++.+-++.+.++. || .+ ...+++++|+++|+.+.-
T Consensus 187 IDL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 187 IDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred echHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 467788889999988899999888 78 44 588999999999999854
No 445
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=26.40 E-value=4.5e+02 Score=25.64 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=42.6
Q ss_pred HHHHHHHcCCCEEeEecC--------------CChhHHHHHHHHHHHhCCC-cEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 196 LASKYRKQGFTTLKLKVG--------------KNLKEDIEVLRAIRAVHPD-SSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG--------------~~~~~D~~~v~avr~~~~~-~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
.++.+.+.|...+-+.+. .+.++-++.++.+++.+-. +.+.+-.-.+.+.++..++++.+.+.++
T Consensus 104 ~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv 183 (334)
T TIGR02666 104 HAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGV 183 (334)
T ss_pred HHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 345555667666665443 1334445566666666543 5554433345677777778887878777
Q ss_pred CCceeec
Q 015161 261 TPVLFEQ 267 (412)
Q Consensus 261 ~~~~iEe 267 (412)
.+.++|-
T Consensus 184 ~~~~ie~ 190 (334)
T TIGR02666 184 TLRFIEL 190 (334)
T ss_pred eEEEEec
Confidence 6556664
No 446
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.38 E-value=3.4e+02 Score=25.35 Aligned_cols=61 Identities=20% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcC
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 339 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~g 339 (412)
.+++-.+++++ ..++||..+=-+.+.+++++++..+ ++.+.+..... ...-.+.++++.+|
T Consensus 61 ~~~~~i~~i~~----~~~ipv~~~GGi~s~~~~~~~l~~G-a~~Viigt~~l--~~p~~~~ei~~~~g 121 (253)
T PRK02083 61 TMLDVVERVAE----QVFIPLTVGGGIRSVEDARRLLRAG-ADKVSINSAAV--ANPELISEAADRFG 121 (253)
T ss_pred chHHHHHHHHH----hCCCCEEeeCCCCCHHHHHHHHHcC-CCEEEEChhHh--hCcHHHHHHHHHcC
Confidence 35666777764 5679999999999999999999976 77776653322 22223344555554
No 447
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=26.37 E-value=4e+02 Score=26.52 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHcCCCC--CceeecCCCCCCHHHHHHhHHHhhcc-cCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 242 GYKPQEAVEVLEKLYEMGVT--PVLFEQPVHRDDWEGLGHVSHIAKDK-FGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~--~~~iEeP~~~~d~~~~~~l~~~~~~~-~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
.+++. ++++..++.|.. .+.-|+.+=...++.++++++ . +++||---+-+.+++++.+.-..| +|.+.+
T Consensus 138 ~~dp~---~iA~~Ye~~GA~aISVLTd~~~F~Gs~e~L~~vr~----~~v~lPvLrKDFIID~yQI~eAr~~G-ADAVLL 209 (338)
T PLN02460 138 NFDPV---EIAQAYEKGGAACLSVLTDEKYFQGSFENLEAIRN----AGVKCPLLCKEFIVDAWQIYYARSKG-ADAILL 209 (338)
T ss_pred CCCHH---HHHHHHHhCCCcEEEEecCcCcCCCCHHHHHHHHH----cCCCCCEeeccccCCHHHHHHHHHcC-CCcHHH
Confidence 34544 355555555421 135566666677888888764 4 789999999999999998888777 577755
Q ss_pred cCCCCcHHHHHHHHHHHHHcCCcEEEcc
Q 015161 319 KLAKVGVLGALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 319 k~~~~Git~~l~i~~~A~~~gi~~~~~~ 346 (412)
=..-.+-.....+.++|+..|+.+.+-.
T Consensus 210 IaaiL~~~~L~~l~~~A~~LGme~LVEV 237 (338)
T PLN02460 210 IAAVLPDLDIKYMLKICKSLGMAALIEV 237 (338)
T ss_pred HHHhCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 4433343357889999999999987643
No 448
>PRK09389 (R)-citramalate synthase; Provisional
Probab=26.15 E-value=7.8e+02 Score=25.80 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEE
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFIL 237 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~v 237 (412)
+.++-.+.++.+.+.|+..+-+-.-...+.|.+.++.+.+...+..+..
T Consensus 22 s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a 70 (488)
T PRK09389 22 TPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICS 70 (488)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEe
Confidence 5677778888888899998887543334678888998887654555543
No 449
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=26.06 E-value=4.5e+02 Score=25.08 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=13.2
Q ss_pred cccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 286 DKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 286 ~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
+++++||..| +.+..++....+ .+|++|+
T Consensus 70 ~~~glpvvTe--V~~~~~~~~vae--~vDilQI 98 (258)
T TIGR01362 70 EEFGVPILTD--VHESSQCEPVAE--VVDIIQI 98 (258)
T ss_pred HHhCCceEEE--eCCHHHHHHHHh--hCcEEEe
Confidence 3455555553 334444443332 2555554
No 450
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=26.01 E-value=4.8e+02 Score=23.68 Aligned_cols=18 Identities=11% Similarity=0.355 Sum_probs=8.4
Q ss_pred HHHHHHHHcC--CcEEEccC
Q 015161 330 EIIEVVRASG--LNLMIGGM 347 (412)
Q Consensus 330 ~i~~~A~~~g--i~~~~~~~ 347 (412)
.+.+++++++ ..++.|+.
T Consensus 134 ~~~~l~~~~~~~~~~i~H~~ 153 (251)
T cd01310 134 DVLEILKEYGPPKRGVFHCF 153 (251)
T ss_pred HHHHHHHhcCCCCCEEEEcc
Confidence 3445555553 44444443
No 451
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.95 E-value=6.7e+02 Score=25.00 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred HHHHHHhhCCCcHHHHhCCCCCeeeeceeecCCCHHHHHHHHHHHHHcC-----------CCEEeEecC-CChhHHHHHH
Q 015161 156 LIDAVAKSVSMPLWRLFGGVSNTITTDITIPIVSPAEAAELASKYRKQG-----------FTTLKLKVG-KNLKEDIEVL 223 (412)
Q Consensus 156 l~Dl~gk~~g~Pl~~LLGg~~~~i~~~~~i~~~~~~~~~~~~~~~~~~G-----------f~~~KiKvG-~~~~~D~~~v 223 (412)
+....++..++|+.-.|..... .+ .+.+.++.+.| |+.+=+... .++++.++.-
T Consensus 76 ~~~~~A~~~~VPV~lHLDH~~~----------~~----~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T 141 (340)
T cd00453 76 HVHQMAEHYGVPVILHTDHCAK----------KL----LPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEIC 141 (340)
T ss_pred HHHHHHHHCCCCEEEEcCCCCC----------CC----HHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHH
Confidence 3345577777776544432210 01 35567778899 888877766 4667777776
Q ss_pred HHHHHh----CC--CcEE----------E---EeCCCCCC-HHHHHHHHHHHH--------------cCCCCCceee-cC
Q 015161 224 RAIRAV----HP--DSSF----------I---LDANEGYK-PQEAVEVLEKLY--------------EMGVTPVLFE-QP 268 (412)
Q Consensus 224 ~avr~~----~~--~~~l----------~---vDaN~~~~-~~~A~~~~~~l~--------------~~~l~~~~iE-eP 268 (412)
+.+.+. +- +.+| . .|.+..|| +++|.+|.++.. -.|+ |-. +|
T Consensus 142 ~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~---Yk~g~p 218 (340)
T cd00453 142 SKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGV---YKKGNV 218 (340)
T ss_pred HHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccC---CCCCCC
Confidence 666542 10 1111 1 12223365 999999999876 2333 333 33
Q ss_pred CCCCCHHHHHHhHHHhhcc-----cCCeEEe-CCCCCCHHHHHHHHHcCCCCEEEecC
Q 015161 269 VHRDDWEGLGHVSHIAKDK-----FGVSVAA-DESCRSLDDVKKIVKGNLADVINIKL 320 (412)
Q Consensus 269 ~~~~d~~~~~~l~~~~~~~-----~~ipIa~-dEs~~~~~~~~~~i~~~a~d~v~ik~ 320 (412)
.-|++-++++++....+ .++|+.+ |=|=...++++++++.|.+ =+|++.
T Consensus 219 --~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgSG~~~e~~~~ai~~Gi~-KiNi~T 273 (340)
T cd00453 219 --VLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVV-KMNIDT 273 (340)
T ss_pred --ccCHHHHHHHHHHHHhhcccCCCCCceEEeCCCCCCHHHHHHHHHcCCe-EEEccc
Confidence 45788888887643211 1677765 5677777889999988743 345553
No 452
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=25.80 E-value=3.3e+02 Score=25.60 Aligned_cols=72 Identities=18% Similarity=0.262 Sum_probs=51.5
Q ss_pred HHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCc-HHH-------HHHHHHHHHHcCCcEEEccCc
Q 015161 277 LGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVG-VLG-------ALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 277 ~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~-------~l~i~~~A~~~gi~~~~~~~~ 348 (412)
.+++.+.+| ..|+.|+.|.-=++...+..+.+. .+|++-+|...+. +.. ...++.+|+..|+.++.-+-
T Consensus 138 ~~~~l~~L~-~~G~~ialDDFGtG~ssl~~L~~l-~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGV- 214 (256)
T COG2200 138 ALALLRQLR-ELGVRIALDDFGTGYSSLSYLKRL-PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGV- 214 (256)
T ss_pred HHHHHHHHH-HCCCeEEEECCCCCHHHHHHHhhC-CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeec-
Confidence 333333344 468999999888888888776664 5899999877664 331 34589999999999998764
Q ss_pred chH
Q 015161 349 ETR 351 (412)
Q Consensus 349 es~ 351 (412)
||.
T Consensus 215 Et~ 217 (256)
T COG2200 215 ETE 217 (256)
T ss_pred CCH
Confidence 654
No 453
>PLN02334 ribulose-phosphate 3-epimerase
Probab=25.46 E-value=5.3e+02 Score=23.67 Aligned_cols=122 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEecCC-ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHH-HcC-CC---
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKVGK-NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKL-YEM-GV--- 260 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKvG~-~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l-~~~-~l--- 260 (412)
+.+|.+..+.+ .+.|...+=+.++. ..+...+.++.+++ .+..+.+..|..-..+.+.++++.- .+| .+
T Consensus 74 v~~p~d~~~~~---~~~gad~v~vH~~q~~~d~~~~~~~~i~~--~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v 148 (229)
T PLN02334 74 VTNPEDYVPDF---AKAGASIFTFHIEQASTIHLHRLIQQIKS--AGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSV 148 (229)
T ss_pred cCCHHHHHHHH---HHcCCCEEEEeeccccchhHHHHHHHHHH--CCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEE
Confidence 44676665554 55788888888873 22233344555554 4556777776332233333333320 221 11
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 261 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++-.=.|.+++..++.++++++ ...++||..+=.+ +.+.+..+.+.| +|++.+
T Consensus 149 ~pg~~~~~~~~~~~~~i~~~~~---~~~~~~I~a~GGI-~~e~i~~l~~aG-ad~vvv 201 (229)
T PLN02334 149 EPGFGGQSFIPSMMDKVRALRK---KYPELDIEVDGGV-GPSTIDKAAEAG-ANVIVA 201 (229)
T ss_pred ecCCCccccCHHHHHHHHHHHH---hCCCCcEEEeCCC-CHHHHHHHHHcC-CCEEEE
Confidence 0001123333333444555443 1235788776554 678888888888 466644
No 454
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=25.26 E-value=5.2e+02 Score=24.02 Aligned_cols=106 Identities=20% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHH--HHHHHH
Q 015161 231 PDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLD--DVKKIV 308 (412)
Q Consensus 231 ~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~--~~~~~i 308 (412)
|-..+.+|. .+.++|++.++.+.++ + .|||=-+|----+|++.++.......+-+|.+|--..+.. ..+.+.
T Consensus 4 p~LQvALD~---~~l~~Ai~~a~~v~~~-~--diiEvGTpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~ 77 (217)
T COG0269 4 PLLQVALDL---LDLEEAIEIAEEVADY-V--DIIEVGTPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAF 77 (217)
T ss_pred cceEeeecc---cCHHHHHHHHHHhhhc-c--eEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHH
Confidence 344566663 5689999999999998 5 4999887743334444433211123567888887666554 455566
Q ss_pred HcCCCCEEEecCCCCc---HHHHHHHHHHHHHcCCcEEEccC
Q 015161 309 KGNLADVINIKLAKVG---VLGALEIIEVVRASGLNLMIGGM 347 (412)
Q Consensus 309 ~~~a~d~v~ik~~~~G---it~~l~i~~~A~~~gi~~~~~~~ 347 (412)
+.| .|++.+ +| ..-..+.++.|+++|+.+++--+
T Consensus 78 ~aG-Ad~~tV----~g~A~~~TI~~~i~~A~~~~~~v~iDl~ 114 (217)
T COG0269 78 EAG-ADWVTV----LGAADDATIKKAIKVAKEYGKEVQIDLI 114 (217)
T ss_pred HcC-CCEEEE----EecCCHHHHHHHHHHHHHcCCeEEEEee
Confidence 666 577644 34 34456778999999999987443
No 455
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=25.22 E-value=6.1e+02 Score=24.63 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=16.9
Q ss_pred CEEEecCCCCc-HHHHHHHHHHHHHcCCc
Q 015161 314 DVINIKLAKVG-VLGALEIIEVVRASGLN 341 (412)
Q Consensus 314 d~v~ik~~~~G-it~~l~i~~~A~~~gi~ 341 (412)
..|++|-...- +.+++-+++...+.|-+
T Consensus 131 kpV~lKkGq~~t~~e~~~aaeki~~~GN~ 159 (290)
T PLN03033 131 KIINIKKGQFCAPSVMRNSAEKVRLAGNP 159 (290)
T ss_pred CeEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 45666665554 66666666666666544
No 456
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=24.88 E-value=8e+02 Score=25.51 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHcCC
Q 015161 325 VLGALEIIEVVRASGL 340 (412)
Q Consensus 325 it~~l~i~~~A~~~gi 340 (412)
+..+.++...|.++|+
T Consensus 211 l~~L~~lv~~~~~~GI 226 (450)
T PRK04165 211 LEELKELVEKLQAAGI 226 (450)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3445555566666655
No 457
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=24.75 E-value=2.6e+02 Score=26.47 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=46.4
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
.+.+..+++.+ .+.+||-.|=-+.+.+++.++++.+. +.+.+-.. -+...-.+.++++++|-++++
T Consensus 62 ~n~~~i~~i~~----~~~~~vQvGGGIRs~~~v~~ll~~G~-~rViiGt~--av~~p~~v~~~~~~~g~rivv 127 (241)
T COG0106 62 RNLEAIKEILE----ATDVPVQVGGGIRSLEDVEALLDAGV-ARVIIGTA--AVKNPDLVKELCEEYGDRIVV 127 (241)
T ss_pred ccHHHHHHHHH----hCCCCEEeeCCcCCHHHHHHHHHCCC-CEEEEecc--eecCHHHHHHHHHHcCCcEEE
Confidence 34555666654 56889988889999999999999874 44433211 145566778999999866655
No 458
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=24.71 E-value=6.7e+02 Score=24.59 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 289 GVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 289 ~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
++||.++=-+.+..|+.+++..| +|.+++
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lG-Ad~V~i 283 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALG-ADLVGM 283 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhC-CCEEEE
Confidence 79999999999999999999988 788765
No 459
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=24.69 E-value=2.5e+02 Score=24.81 Aligned_cols=46 Identities=15% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCEEEecCCCCc---H-HHHHHHHHHHHHcCCcEEEccCc
Q 015161 302 DDVKKIVKGNLADVINIKLAKVG---V-LGALEIIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 302 ~~~~~~i~~~a~d~v~ik~~~~G---i-t~~l~i~~~A~~~gi~~~~~~~~ 348 (412)
+.+.++++.| ++.+|+...... + ..+.++..+|+++++++++++..
T Consensus 16 ~~l~~~~~~g-v~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~~ 65 (180)
T PF02581_consen 16 EQLEAALAAG-VDLVQLREKDLSDEELLELARRLAELCQKYGVPLIINDRV 65 (180)
T ss_dssp HHHHHHHHTT--SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-H
T ss_pred HHHHHHHHCC-CcEEEEcCCCCCccHHHHHHHHHHHHhhcceEEEEecCCH
Confidence 4567778877 999999877653 3 35778999999999999998853
No 460
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=24.36 E-value=6.9e+02 Score=24.66 Aligned_cols=127 Identities=13% Similarity=0.194 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC----------CChhHHHHHHHHHHHhCC------CcEEEEeCCCCCCHHHHHHHH
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG----------KNLKEDIEVLRAIRAVHP------DSSFILDANEGYKPQEAVEVL 252 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG----------~~~~~D~~~v~avr~~~~------~~~l~vDaN~~~~~~~A~~~~ 252 (412)
+.++..+.++++.+ .-..+-+.+. .+.+.-.+.+++|++... .+.+++----.++.++...++
T Consensus 152 ~~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia 230 (335)
T TIGR01036 152 AKEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIA 230 (335)
T ss_pred CHHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHH
Confidence 45666666666533 3567777654 122333445666666421 256666655555555556666
Q ss_pred HHHHcCCCCC-ce---------eecCCCCCC----------HHHHHHhHHHhhccc--CCeEEeCCCCCCHHHHHHHHHc
Q 015161 253 EKLYEMGVTP-VL---------FEQPVHRDD----------WEGLGHVSHIAKDKF--GVSVAADESCRSLDDVKKIVKG 310 (412)
Q Consensus 253 ~~l~~~~l~~-~~---------iEeP~~~~d----------~~~~~~l~~~~~~~~--~ipIa~dEs~~~~~~~~~~i~~ 310 (412)
+.+.+.++.= .. ++-|..... .-.++.+.. +++.. .+||.+-=.+.+.+|+.+++..
T Consensus 231 ~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~-~~~~~~~~ipiig~GGI~~~~da~e~l~a 309 (335)
T TIGR01036 231 DSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRR-LYAELQGRLPIIGVGGISSAQDALEKIRA 309 (335)
T ss_pred HHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHH-HHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 6666654210 01 121110000 011222221 12223 5899888889999999999988
Q ss_pred CCCCEEEe
Q 015161 311 NLADVINI 318 (412)
Q Consensus 311 ~a~d~v~i 318 (412)
| +|.+|+
T Consensus 310 G-A~~Vqv 316 (335)
T TIGR01036 310 G-ASLLQI 316 (335)
T ss_pred C-CcHHHh
Confidence 7 566654
No 461
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=24.35 E-value=5.9e+02 Score=24.71 Aligned_cols=77 Identities=12% Similarity=0.251 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 233 SSFILDANEGYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 233 ~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
-.+.+|.+ ..+++++.++.+.++..++. |++-|+.-.....- +-..-|+.+=+-...+..+.+++.=.
T Consensus 88 G~i~IDmS-Tisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~~A~---------~GtLtimvGG~~~~f~r~~pvl~~~g 155 (286)
T COG2084 88 GAIVIDMS-TISPETARELAAALAAKGLE--FLDAPVSGGVPGAA---------AGTLTIMVGGDAEAFERAKPVLEAMG 155 (286)
T ss_pred CCEEEECC-CCCHHHHHHHHHHHHhcCCc--EEecCccCCchhhh---------hCceEEEeCCCHHHHHHHHHHHHHhc
Confidence 46788865 56899999999999999985 99999997653111 22345555544444555556666544
Q ss_pred CCEEEecCC
Q 015161 313 ADVINIKLA 321 (412)
Q Consensus 313 ~d~v~ik~~ 321 (412)
-.++.+-..
T Consensus 156 ~~i~~~G~~ 164 (286)
T COG2084 156 KNIVHVGPV 164 (286)
T ss_pred CceEEECCC
Confidence 556655444
No 462
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=24.03 E-value=6.6e+02 Score=24.27 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=54.2
Q ss_pred eCCCCCCHHHHHHHHHHHHcCCCCCceee----------cCCCCCCHHHHHH---hHHHhhcccCCeEEeCCCCCCHHHH
Q 015161 238 DANEGYKPQEAVEVLEKLYEMGVTPVLFE----------QPVHRDDWEGLGH---VSHIAKDKFGVSVAADESCRSLDDV 304 (412)
Q Consensus 238 DaN~~~~~~~A~~~~~~l~~~~l~~~~iE----------eP~~~~d~~~~~~---l~~~~~~~~~ipIa~dEs~~~~~~~ 304 (412)
|...-.++++|++.+.++-+.|.. +|. +|++.+ +.+.+ +-+.++...++||..|= +.++-+
T Consensus 30 dgg~~~~~~~a~~~a~~~~~~GAd--IIDIGgeSTrPg~~~v~~e--eE~~Rv~pvI~~l~~~~~~~ISIDT--~~~~va 103 (282)
T PRK11613 30 DGGTHNSLIDAVKHANLMINAGAT--IIDVGGESTRPGAAEVSVE--EELDRVIPVVEAIAQRFEVWISVDT--SKPEVI 103 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCc--EEEECCCCCCCCCCCCCHH--HHHHHHHHHHHHHHhcCCCeEEEEC--CCHHHH
Confidence 333345677777777776554432 333 222221 22333 22333444579998883 456667
Q ss_pred HHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEE
Q 015161 305 KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMI 344 (412)
Q Consensus 305 ~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~ 344 (412)
+.+++.| +|++| |+ .|+.. -+++..++++|.++++
T Consensus 104 ~~AL~~G-adiIN-DI--~g~~d-~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 104 RESAKAG-AHIIN-DI--RSLSE-PGALEAAAETGLPVCL 138 (282)
T ss_pred HHHHHcC-CCEEE-EC--CCCCC-HHHHHHHHHcCCCEEE
Confidence 8888887 78875 22 24321 1445567788888876
No 463
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.28 E-value=8.1e+02 Score=25.04 Aligned_cols=60 Identities=13% Similarity=0.324 Sum_probs=37.8
Q ss_pred CeEEeCCCCCCHHHHHHHHHcCCCCEEEecCC-----------CCc---HHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 290 VSVAADESCRSLDDVKKIVKGNLADVINIKLA-----------KVG---VLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 290 ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~-----------~~G---it~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
++|..+ .+.+.++.+.+++.| +|++.+-.. -+| ++....+.+++++.+++++..+-+.++
T Consensus 195 ~~vi~g-~V~T~e~a~~l~~aG-aD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~ 268 (404)
T PRK06843 195 LDLIAG-NIVTKEAALDLISVG-ADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFS 268 (404)
T ss_pred CcEEEE-ecCCHHHHHHHHHcC-CCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCH
Confidence 455443 346788888888877 677654321 123 334446777788889999887655444
No 464
>PLN02389 biotin synthase
Probab=23.27 E-value=7.8e+02 Score=24.83 Aligned_cols=147 Identities=14% Similarity=0.201 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCEEeEec----CCC----hhHHHHHHHHHHHhCCCcEEEEeCCCCCC-HHHHHHHHHH-HH
Q 015161 187 IVSPAEAAELASKYRKQGFTTLKLKV----GKN----LKEDIEVLRAIRAVHPDSSFILDANEGYK-PQEAVEVLEK-LY 256 (412)
Q Consensus 187 ~~~~~~~~~~~~~~~~~Gf~~~KiKv----G~~----~~~D~~~v~avr~~~~~~~l~vDaN~~~~-~~~A~~~~~~-l~ 256 (412)
..+++++.+.++++.+.|++.|=+-. +.+ ++.=.+.++.+++.+. . +-++.+.. .+++.++-+. +.
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l--~--i~~s~G~l~~E~l~~LkeAGld 190 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGM--E--VCCTLGMLEKEQAAQLKEAGLT 190 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCc--E--EEECCCCCCHHHHHHHHHcCCC
Confidence 34889999999999999999886531 111 2223344555554332 3 33454444 4443333222 23
Q ss_pred cCCCC----CceeecCCCCCCHHHHHHhHHHhhcccCCeEE------eCCCCCCHHHHHHHHHcC--CCCEEEe-----c
Q 015161 257 EMGVT----PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVA------ADESCRSLDDVKKIVKGN--LADVINI-----K 319 (412)
Q Consensus 257 ~~~l~----~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa------~dEs~~~~~~~~~~i~~~--a~d~v~i-----k 319 (412)
.++.. +.++.+=++..+++..-+..+.++ +.+++++ .+|+..+..+....++.- ..+.+.+ -
T Consensus 191 ~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~-~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~ 269 (379)
T PLN02389 191 AYNHNLDTSREYYPNVITTRSYDDRLETLEAVR-EAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAV 269 (379)
T ss_pred EEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH-HcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceec
Confidence 22221 113334344456654433332222 3456653 356655544444444321 2343321 1
Q ss_pred ----CCC---CcHHHHHHHHHHHHHc
Q 015161 320 ----LAK---VGVLGALEIIEVVRAS 338 (412)
Q Consensus 320 ----~~~---~Git~~l~i~~~A~~~ 338 (412)
... ....+.++++++++-.
T Consensus 270 ~GTpL~~~~~~s~~e~lr~iAi~Rl~ 295 (379)
T PLN02389 270 KGTPLEDQKPVEIWEMVRMIATARIV 295 (379)
T ss_pred CCCcCCCCCCCCHHHHHHHHHHHHHH
Confidence 111 1255678888887754
No 465
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=23.23 E-value=1.7e+02 Score=29.28 Aligned_cols=142 Identities=14% Similarity=0.210 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEecC---CChhHHHHHHHHHHH-h-CCCcEEEEeCCCC------CCHHHHHHHHHHHHc
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKVG---KNLKEDIEVLRAIRA-V-HPDSSFILDANEG------YKPQEAVEVLEKLYE 257 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKvG---~~~~~D~~~v~avr~-~-~~~~~l~vDaN~~------~~~~~A~~~~~~l~~ 257 (412)
+.++..+..+++.+.||+.+=.-+. .+.+.-.++++.+-+ + --++.+++|.|.. ++.++. ..++ +
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~~dl-~~~~---~ 87 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISYDDL-SFFK---E 87 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BTTBT-HHHH---H
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHH-HHHH---H
Confidence 4566777788888999988765554 122333455555544 2 3579999999974 344332 3333 3
Q ss_pred CCCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC-------CCEEEecCCCCc--HHHH
Q 015161 258 MGVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL-------ADVINIKLAKVG--VLGA 328 (412)
Q Consensus 258 ~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a-------~d~v~ik~~~~G--it~~ 328 (412)
.|+...=+-+-+.. +..+++++ + ++.|.+.=|..+..++..+++.++ |+=+=|.+- .| ..-.
T Consensus 88 lGi~~lRlD~Gf~~---~~ia~ls~----n-g~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~-TGLs~~~f 158 (357)
T PF05913_consen 88 LGIDGLRLDYGFSG---EEIAKLSK----N-GIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPY-TGLSEEFF 158 (357)
T ss_dssp HT-SEEEESSS-SC---HHHHHHTT----T--SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT--SB-HHHH
T ss_pred cCCCEEEECCCCCH---HHHHHHHh----C-CCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCC-CCCCHHHH
Confidence 33322234455543 44566653 3 799999988877788888877663 111224432 47 3457
Q ss_pred HHHHHHHHHcCCcEE
Q 015161 329 LEIIEVVRASGLNLM 343 (412)
Q Consensus 329 l~i~~~A~~~gi~~~ 343 (412)
.+.-++-+++|++++
T Consensus 159 ~~~n~~~k~~gi~~~ 173 (357)
T PF05913_consen 159 IEKNQLLKEYGIKTA 173 (357)
T ss_dssp HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHCCCcEE
Confidence 788899999999975
No 466
>PRK12928 lipoyl synthase; Provisional
Probab=23.15 E-value=5.8e+02 Score=24.68 Aligned_cols=107 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHcCCCCCcee----ecCCCCCCHHHHHHhHHHhhcc---cCCeEEeCCCCC-CHHHHHHHHHcCCC
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLF----EQPVHRDDWEGLGHVSHIAKDK---FGVSVAADESCR-SLDDVKKIVKGNLA 313 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~i----EeP~~~~d~~~~~~l~~~~~~~---~~ipIa~dEs~~-~~~~~~~~i~~~a~ 313 (412)
..++++..+.++.+.+.|+.-..| .+.++....+.+.++.+.+++. ..+-+..-+-.. ..+.++++.+++ +
T Consensus 86 ~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag-~ 164 (290)
T PRK12928 86 PLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK-P 164 (290)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC-c
Q ss_pred CEEE----------ecCCCCc-HHHHHHHHHHHHHcC--CcEEEccCcc
Q 015161 314 DVIN----------IKLAKVG-VLGALEIIEVVRASG--LNLMIGGMVE 349 (412)
Q Consensus 314 d~v~----------ik~~~~G-it~~l~i~~~A~~~g--i~~~~~~~~e 349 (412)
++++ -++.+-. ..+.++++..|++.| +.+..+-+++
T Consensus 165 ~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG 213 (290)
T PRK12928 165 DVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLG 213 (290)
T ss_pred hhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEe
No 467
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=23.11 E-value=6.1e+02 Score=23.55 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCCCcee-----ecC-
Q 015161 196 LASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVTPVLF-----EQP- 268 (412)
Q Consensus 196 ~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~~~i-----EeP- 268 (412)
+++-..+.|-..+-+-.-.+. .-.-.+++.+ -.+..+++|--+.|+++++.++++.+ ++....+ +|-
T Consensus 72 e~~ma~~aGAd~~tV~g~A~~---~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~---gvd~~~~H~g~D~q~~ 145 (217)
T COG0269 72 EARMAFEAGADWVTVLGAADD---ATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKEL---GVDQVILHRGRDAQAA 145 (217)
T ss_pred HHHHHHHcCCCEEEEEecCCH---HHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHh---CCCEEEEEecccHhhc
Confidence 344455677776665432222 1222333333 24589999999999999988887753 3220111 111
Q ss_pred -CC--CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHH
Q 015161 269 -VH--RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVR 336 (412)
Q Consensus 269 -~~--~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~ 336 (412)
.. .+|++..+++.. ....+-|++| -+++++..+...+ ++++.+--. +|.+....+.|+
T Consensus 146 G~~~~~~~l~~ik~~~~---~g~~vAVaGG---I~~~~i~~~~~~~-~~ivIvGra---It~a~dp~~~a~ 206 (217)
T COG0269 146 GKSWGEDDLEKIKKLSD---LGAKVAVAGG---ITPEDIPLFKGIG-ADIVIVGRA---ITGAKDPAEAAR 206 (217)
T ss_pred CCCccHHHHHHHHHhhc---cCceEEEecC---CCHHHHHHHhcCC-CCEEEECch---hcCCCCHHHHHH
Confidence 11 123344444431 1245677777 5677777777766 677654211 665554444444
No 468
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=22.95 E-value=9e+02 Score=27.54 Aligned_cols=86 Identities=23% Similarity=0.349 Sum_probs=59.8
Q ss_pred EEEeCCC------CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHh----hc-ccCCeEEe-CCCCCCHH
Q 015161 235 FILDANE------GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIA----KD-KFGVSVAA-DESCRSLD 302 (412)
Q Consensus 235 l~vDaN~------~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~----~~-~~~ipIa~-dEs~~~~~ 302 (412)
+.++.|. +++.+++..|+..+-+.++ +=.+|++.-|.++..+|-+.. |+ +-+++|.. ||...++.
T Consensus 764 fSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i---~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICGE~ggdp~ 840 (879)
T PRK09279 764 FSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGI---LEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICGEHGGDPA 840 (879)
T ss_pred EEEcccHHHHHHhccCccchhhhHHHHHhcCc---ccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECCCCccCHH
Confidence 5667773 6677777778877767676 668899877766666554331 11 13566655 68888888
Q ss_pred HHHHHHHcCCCCEEEecCCCCc
Q 015161 303 DVKKIVKGNLADVINIKLAKVG 324 (412)
Q Consensus 303 ~~~~~i~~~a~d~v~ik~~~~G 324 (412)
.+.-++..| +|.+.+.+.++-
T Consensus 841 ~i~~l~~lG-ld~vS~sP~~Vp 861 (879)
T PRK09279 841 SIEFCHKVG-LDYVSCSPYRVP 861 (879)
T ss_pred HHHHHHHCC-CCEEEECHHHHH
Confidence 888787776 899988887764
No 469
>PRK14847 hypothetical protein; Provisional
Probab=22.53 E-value=6.9e+02 Score=24.83 Aligned_cols=102 Identities=14% Similarity=0.163 Sum_probs=61.0
Q ss_pred CcEEEEeCCC----CCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhccc---CCeEEeCCCCCCH
Q 015161 232 DSSFILDANE----GYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKF---GVSVAADESCRSL 301 (412)
Q Consensus 232 ~~~l~vDaN~----~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~---~ipIa~dEs~~~~ 301 (412)
|..|| |.+| .|+.+|=+++++.|.+.|+. .||=-+| .++++..+++.+. .. ++.|+. =+-...
T Consensus 37 DTTLR-DGeQ~pGv~fs~eeKl~IA~~L~~lGVd--~IEvG~Pa~s~~e~e~ir~I~~~---~~~~~~~~i~~-~~r~~~ 109 (333)
T PRK14847 37 STDLR-DGNQALIEPMDGARKLRLFEQLVAVGLK--EIEVAFPSASQTDFDFVRKLIDE---RRIPDDVTIEA-LTQSRP 109 (333)
T ss_pred cCCCC-ccCCCCCCCCCHHHHHHHHHHHHHcCCC--EEEeeCCCCCHHHHHHHHHHHHh---CCCCCCcEEEE-EecCcH
Confidence 44555 6676 47899999999999999985 9998665 4566777777531 11 233322 122335
Q ss_pred HHHHHHHHcCC---CCEEEe-----------cCCCC--c-HHHHHHHHHHHHHcCC
Q 015161 302 DDVKKIVKGNL---ADVINI-----------KLAKV--G-VLGALEIIEVVRASGL 340 (412)
Q Consensus 302 ~~~~~~i~~~a---~d~v~i-----------k~~~~--G-it~~l~i~~~A~~~gi 340 (412)
.|+...++.+. .+.+.+ |..+. - +..+.+.+.+|++++.
T Consensus 110 ~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~ 165 (333)
T PRK14847 110 DLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALAD 165 (333)
T ss_pred HHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc
Confidence 66666666532 122322 12221 1 2345678889999944
No 470
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=22.38 E-value=7e+02 Score=23.94 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=89.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEeEec--C--C--ChhHHHHHHHHHHHh-CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 189 SPAEAAELASKYRKQGFTTLKLKV--G--K--NLKEDIEVLRAIRAV-HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 189 ~~~~~~~~~~~~~~~Gf~~~KiKv--G--~--~~~~D~~~v~avr~~-~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
+.+.+.+.++.+.+.|.+.+=+-- | . +.++=.+.++.+.+. ..++.+++=.. . +.+++++.++..++.|..
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~-~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG-G-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC-c-cHHHHHHHHHHHHHhCCC
Confidence 556788889999999998886532 2 1 223333445666664 55677887665 3 689999999999988764
Q ss_pred CceeecCCC-CCCHHHHHHhHHHhhcccCCeEEeCCC---CCCHHHHHHHHHcCCCCEEEecCCCCc-HHHHHHHHHHHH
Q 015161 262 PVLFEQPVH-RDDWEGLGHVSHIAKDKFGVSVAADES---CRSLDDVKKIVKGNLADVINIKLAKVG-VLGALEIIEVVR 336 (412)
Q Consensus 262 ~~~iEeP~~-~~d~~~~~~l~~~~~~~~~ipIa~dEs---~~~~~~~~~~i~~~a~d~v~ik~~~~G-it~~l~i~~~A~ 336 (412)
-..+=-|.- +-..+++.+.-+.+.+.+++||..=.. -.+++.+.++.+.. -.++-+|-+ .| +....++.+...
T Consensus 102 av~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~-~nvvgiKds-~~d~~~~~~~~~~~~ 179 (296)
T TIGR03249 102 GYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRC-PNLVGFKDG-IGDMEQMIEITQRLG 179 (296)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhC-CCEEEEEeC-CCCHHHHHHHHHHcC
Confidence 334444422 111233222111222457789865331 23566677776522 477888876 46 777666654332
Q ss_pred HcCCcEEEc
Q 015161 337 ASGLNLMIG 345 (412)
Q Consensus 337 ~~gi~~~~~ 345 (412)
.++.+..|
T Consensus 180 -~~~~v~~G 187 (296)
T TIGR03249 180 -DRLGYLGG 187 (296)
T ss_pred -CCeEEEeC
Confidence 24555444
No 471
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=22.34 E-value=3.3e+02 Score=26.31 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEe-----cCC---ChhHHHHHH----HHHHHhCCCcEEEEeCCCC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLK-----VGK---NLKEDIEVL----RAIRAVHPDSSFILDANEG 242 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiK-----vG~---~~~~D~~~v----~avr~~~~~~~l~vDaN~~ 242 (412)
.+++.+.+.+.++.++|-..+-+- .|. +.+++++|+ +++++.. ++.|.||....
T Consensus 35 ~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~-~~~ISIDT~~~ 100 (282)
T PRK11613 35 NSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF-EVWISVDTSKP 100 (282)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEECCCH
Confidence 367889999999999999998876 331 345566664 3444333 68899997543
No 472
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=22.24 E-value=6e+02 Score=25.67 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=62.9
Q ss_pred CeEEeCCCCCC---HHHHHHHHHcCCCCEEEecCCC--CcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHHHccC
Q 015161 290 VSVAADESCRS---LDDVKKIVKGNLADVINIKLAK--VGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHLSAGL 364 (412)
Q Consensus 290 ipIa~dEs~~~---~~~~~~~i~~~a~d~v~ik~~~--~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hlaaa~ 364 (412)
+-|..|.++.. .+++...++...+.+...+-.. .-+....+.++++++++..++++---+|.+-.+=++.+.+.-
T Consensus 52 ~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~~~ 131 (395)
T PRK15454 52 LFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLVTN 131 (395)
T ss_pred EEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHHhC
Confidence 44566777654 3667777766556655443222 125567889999999999998865445555444333333333
Q ss_pred CCCceecccCCcccccCCCCCceeeeCcEEeeCCCCCcccccCCCC
Q 015161 365 GCFKFIDLDTPLLLSEDPVLDGYEVSGAVYKFTNARGHGGFLHWDN 410 (412)
Q Consensus 365 ~~~~~~e~~~p~~~~~d~~~~~~~~~~G~~~~p~~pGlG~~ld~~~ 410 (412)
+...+-++.+. ....+ .=..+.+|+.+|-|-|++.-+
T Consensus 132 ~~~~~~~~~~~------~~~~~---~~P~iaIPTtaGTGSE~t~~a 168 (395)
T PRK15454 132 PDSTLAEMSET------SVLQP---RLPLIAIPTTAGTGSETTNVT 168 (395)
T ss_pred CCccHHHHhcc------cccCC---CCCEEEECCCCcchhhhCCeE
Confidence 32111112111 01110 013578899999999887643
No 473
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=22.06 E-value=7.9e+02 Score=24.45 Aligned_cols=149 Identities=17% Similarity=0.184 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCEEeEecCCC----hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCC-
Q 015161 188 VSPAEAAELASKYRKQG-FTTLKLKVGKN----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGV- 260 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~G-f~~~KiKvG~~----~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l- 260 (412)
.+++++.+.|+.+.+.| ++..=+--|.+ +++=.+.++.|++..+ +.+.+ ..+-++.+++.++.+. +..|+-
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~-le~c~-slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG-LEVCA-SLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC-cHHhh-ccCCCCHHHHHHHHHcChhheecc
Confidence 36788999999999999 44444444443 3333445555664322 44443 2347888888766554 444443
Q ss_pred ---CCceeecCCCCCCHHH----HHHhHHH-hhcccCCeEEeCCCCCCHHH-HHHHHHcCCCCEEEec-----C------
Q 015161 261 ---TPVLFEQPVHRDDWEG----LGHVSHI-AKDKFGVSVAADESCRSLDD-VKKIVKGNLADVINIK-----L------ 320 (412)
Q Consensus 261 ---~~~~iEeP~~~~d~~~----~~~l~~~-~~~~~~ipIa~dEs~~~~~~-~~~~i~~~a~d~v~ik-----~------ 320 (412)
.+.+++.=++..-|++ +..+++. +.--+|.=+.+||+..+.-+ +..+.+....|-|-+- +
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~ 241 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLEN 241 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCcccc
Confidence 2346666666554544 3333221 00023456677899887544 4444444434544221 1
Q ss_pred CCCc-HHHHHHHHHHHHHc
Q 015161 321 AKVG-VLGALEIIEVVRAS 338 (412)
Q Consensus 321 ~~~G-it~~l~i~~~A~~~ 338 (412)
.+-. ..+.+|++++++-.
T Consensus 242 ~~~~~~~e~lk~IA~~Ri~ 260 (335)
T COG0502 242 AKPLDPFEFLKTIAVARII 260 (335)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 1112 66789999998854
No 474
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.04 E-value=8e+02 Score=24.49 Aligned_cols=37 Identities=16% Similarity=0.053 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 221 EVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 221 ~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
+.++.+.+.|.+.--.-|..+..+|.+..++++.+.+
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~ 237 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMA 237 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHH
Confidence 3344444445444444577777777666666666643
No 475
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=21.95 E-value=3.6e+02 Score=26.71 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChh----HHHHHHHHHHHhCCCcEEE
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLK----EDIEVLRAIRAVHPDSSFI 236 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~----~D~~~v~avr~~~~~~~l~ 236 (412)
.+++++.+.++++.+.|++.+=+--|.+++ .=.+.++.|++.+|++.+-
T Consensus 79 l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~ 131 (351)
T TIGR03700 79 MSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVK 131 (351)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 378999999999999999999988664433 3346678888888877654
No 476
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=21.67 E-value=4e+02 Score=26.63 Aligned_cols=66 Identities=20% Similarity=0.322 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCC-----hhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcCCC
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKN-----LKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~-----~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l 260 (412)
.+++++.+.++.+.+.|.+.+-+--|.+ ++.=.+.++.+++.+|.+.+ ..+ ..+.+++ +.|.+.|+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~-~lt~e~~----~~Lk~aGv 173 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQ-PLNEEEY----KKLVEAGL 173 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--ccc-cCCHHHH----HHHHHcCC
Confidence 3788999999999999999998775632 23335567777777776554 333 4676665 44555554
No 477
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=21.67 E-value=3.8e+02 Score=24.46 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=36.1
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASG 339 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~g 339 (412)
+++-++++++ .+.+||..|--+.+.++++++++.|+ |.+.+-... +.....+.++++++|
T Consensus 60 ~~~~i~~i~~----~~~~pi~~ggGI~~~ed~~~~~~~Ga-~~vvlgs~~--l~d~~~~~~~~~~~g 119 (230)
T TIGR00007 60 NLPVIKKIVR----ETGVPVQVGGGIRSLEDVEKLLDLGV-DRVIIGTAA--VENPDLVKELLKEYG 119 (230)
T ss_pred cHHHHHHHHH----hcCCCEEEeCCcCCHHHHHHHHHcCC-CEEEEChHH--hhCHHHHHHHHHHhC
Confidence 3444555543 45678888778888888888888763 444321111 233445667777776
No 478
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=21.66 E-value=9.2e+02 Score=25.06 Aligned_cols=143 Identities=12% Similarity=0.241 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHH-----HHcC----CCEEeEecC-CChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHcC
Q 015161 189 SPAEAAELASKY-----RKQG----FTTLKLKVG-KNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYEM 258 (412)
Q Consensus 189 ~~~~~~~~~~~~-----~~~G----f~~~KiKvG-~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~ 258 (412)
+.+++.+.++.+ ...| -..+-++.. .+++.-...|+++++.. ++.|.+|. ++++.+.+-++...+.
T Consensus 103 ~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~-dvPLSIDT---~dpevleaAleagad~ 178 (450)
T PRK04165 103 DDEEIDARLKKINNFQFERVGEILKLDMVALRNASGDPEKFAKAVKKVAETT-DLPLILCS---EDPAVLKAALEVVADR 178 (450)
T ss_pred ChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCCCHHHHHHHHHHHHHhc-CCCEEEeC---CCHHHHHHHHHhcCCC
Confidence 345566666666 3334 344444443 23443445566666643 78899997 7788776666666543
Q ss_pred CCCCceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHH----HHHcCCCCEEEecCCCCcHHHHH----H
Q 015161 259 GVTPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKK----IVKGNLADVINIKLAKVGVLGAL----E 330 (412)
Q Consensus 259 ~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~----~i~~~a~d~v~ik~~~~Git~~l----~ 330 (412)
..- .+ .+..++++.+.++.+ ..++|+.+.-. +...+.+ +.+.|. .=+.+|+.--|+..++ +
T Consensus 179 ~pl-I~---Sat~dN~~~m~~la~----~yg~pvVv~~~--dl~~L~~lv~~~~~~GI-~dIILDPg~ggf~ksl~~~~~ 247 (450)
T PRK04165 179 KPL-LY---AATKENYEEMAELAK----EYNCPLVVKAP--NLEELKELVEKLQAAGI-KDLVLDPGTENIKETLDDFVQ 247 (450)
T ss_pred Cce-EE---ecCcchHHHHHHHHH----HcCCcEEEEch--hHHHHHHHHHHHHHcCC-CcEEECCCCchhhhhHHHHHH
Confidence 210 11 244577888877764 46778766321 2333333 334555 5566998764444333 3
Q ss_pred HHHHH-----HHcCCcEEEcc
Q 015161 331 IIEVV-----RASGLNLMIGG 346 (412)
Q Consensus 331 i~~~A-----~~~gi~~~~~~ 346 (412)
+.++| +..|.|+..+.
T Consensus 248 iRr~Al~~~~~~lgyPil~~~ 268 (450)
T PRK04165 248 IRRAAIKKGDRPLGYPIIAFP 268 (450)
T ss_pred HHhhhhhcccccCCCCEEEcc
Confidence 33332 23466766543
No 479
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=21.59 E-value=7.2e+02 Score=23.79 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=85.0
Q ss_pred HHHHHHHHHcCCCEEeE-ecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHH-HHcCCCCCceeecCCCC
Q 015161 194 AELASKYRKQGFTTLKL-KVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEK-LYEMGVTPVLFEQPVHR 271 (412)
Q Consensus 194 ~~~~~~~~~~Gf~~~Ki-KvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~-l~~~~l~~~~iEeP~~~ 271 (412)
.+.|+.+.+.|++.+-+ .++..-..+.+.++++++ .+ +-+..-++...+++.++++. .++.-+...-+++| .
T Consensus 46 ~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~~---~~vqvGGGIR~e~i~~~l~~Ga~rViigT~Av~~~--~ 119 (262)
T PLN02446 46 AEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-YP---GGLQVGGGVNSENAMSYLDAGASHVIVTSYVFRDG--Q 119 (262)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-CC---CCEEEeCCccHHHHHHHHHcCCCEEEEchHHHhCC--C
Confidence 45567788889877653 444323345777888877 32 55667777776666666554 33322222345553 2
Q ss_pred CCHHHHHHhHHHhhcccCCeEEeC----------------C-CCCCHHHH-HHHHHcCCCCEEEecCCCCc-HHH--HHH
Q 015161 272 DDWEGLGHVSHIAKDKFGVSVAAD----------------E-SCRSLDDV-KKIVKGNLADVINIKLAKVG-VLG--ALE 330 (412)
Q Consensus 272 ~d~~~~~~l~~~~~~~~~ipIa~d----------------E-s~~~~~~~-~~~i~~~a~d~v~ik~~~~G-it~--~l~ 330 (412)
-|.+-++++.+... .-.+=++.| | +-.++.++ .++.+.++-.++.-++.+=| +.+ .--
T Consensus 120 ~~p~~v~~~~~~~G-~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~d~el 198 (262)
T PLN02446 120 IDLERLKDLVRLVG-KQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGIDEEL 198 (262)
T ss_pred CCHHHHHHHHHHhC-CCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCCCHHH
Confidence 23445666654331 001222222 1 34466774 77777786677777777766 432 223
Q ss_pred HHHHHHHcCCcEEEccCc
Q 015161 331 IIEVVRASGLNLMIGGMV 348 (412)
Q Consensus 331 i~~~A~~~gi~~~~~~~~ 348 (412)
+..+++..++++..++-.
T Consensus 199 ~~~l~~~~~ipVIASGGv 216 (262)
T PLN02446 199 VALLGEHSPIPVTYAGGV 216 (262)
T ss_pred HHHHHhhCCCCEEEECCC
Confidence 457778889999887654
No 480
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=21.48 E-value=7e+02 Score=23.58 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCCEEeEe--cCCCh-hHHHHHHHHHHHh--CCCcEEEEe-------CCCCCCHHHHHHHHHHHHcCCC
Q 015161 193 AAELASKYRKQGFTTLKLK--VGKNL-KEDIEVLRAIRAV--HPDSSFILD-------ANEGYKPQEAVEVLEKLYEMGV 260 (412)
Q Consensus 193 ~~~~~~~~~~~Gf~~~KiK--vG~~~-~~D~~~v~avr~~--~~~~~l~vD-------aN~~~~~~~A~~~~~~l~~~~l 260 (412)
...+++++.+.|-..+++. +|... +.-.+.++++++. -.++.+.+- .-..++.++-....+...+.+.
T Consensus 95 ~~~~ve~A~~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GA 174 (267)
T PRK07226 95 LVGTVEEAIKLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGA 174 (267)
T ss_pred eeecHHHHHHcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCC
Confidence 3556677888999988876 44321 2223345555553 134555443 1233566554444555667776
Q ss_pred CCceeecCCCCCCHHHHHHhHHHhhcccCCeE--EeCCCCCCHHHHHHHH----HcCCC
Q 015161 261 TPVLFEQPVHRDDWEGLGHVSHIAKDKFGVSV--AADESCRSLDDVKKIV----KGNLA 313 (412)
Q Consensus 261 ~~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipI--a~dEs~~~~~~~~~~i----~~~a~ 313 (412)
. |+--.++ .+.+.++++.+ ...+|| ++|=+..+.+++.+.+ +.|+-
T Consensus 175 D--~vKt~~~-~~~~~l~~~~~----~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 175 D--IVKTNYT-GDPESFREVVE----GCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred C--EEeeCCC-CCHHHHHHHHH----hCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 4 8877654 35677777753 335666 4455555777766665 77754
No 481
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=21.37 E-value=3.1e+02 Score=25.62 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=23.6
Q ss_pred CHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCC
Q 015161 273 DWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNL 312 (412)
Q Consensus 273 d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a 312 (412)
+.+-++++++ ...+||..|=-+.+.+++++++..|+
T Consensus 63 n~~~i~~i~~----~~~~pv~vgGGirs~edv~~~l~~Ga 98 (241)
T PRK14024 63 NRELLAEVVG----KLDVKVELSGGIRDDESLEAALATGC 98 (241)
T ss_pred cHHHHHHHHH----HcCCCEEEcCCCCCHHHHHHHHHCCC
Confidence 3455566553 45677777777777777777777664
No 482
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=21.28 E-value=7.6e+02 Score=27.26 Aligned_cols=93 Identities=11% Similarity=0.151 Sum_probs=66.0
Q ss_pred HHHHHHHHcCCCC--CceeecCCCCCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHH
Q 015161 249 VEVLEKLYEMGVT--PVLFEQPVHRDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVL 326 (412)
Q Consensus 249 ~~~~~~l~~~~l~--~~~iEeP~~~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git 326 (412)
.++++..++.|.. .+.-|+.+=...++.++++++ .+.+||---+-+.+..++.+....| +|.+.+=..-.+-.
T Consensus 73 ~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~vr~----~v~~PvLrKDFIid~~QI~ea~~~G-ADavLLI~~~L~~~ 147 (695)
T PRK13802 73 AALAREYEQGGASAISVLTEGRRFLGSLDDFDKVRA----AVHIPVLRKDFIVTDYQIWEARAHG-ADLVLLIVAALDDA 147 (695)
T ss_pred HHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHHHHH----hCCCCEEeccccCCHHHHHHHHHcC-CCEeehhHhhcCHH
Confidence 3455555554421 124565555667888888764 6789999988899999998888877 58877654444434
Q ss_pred HHHHHHHHHHHcCCcEEEcc
Q 015161 327 GALEIIEVVRASGLNLMIGG 346 (412)
Q Consensus 327 ~~l~i~~~A~~~gi~~~~~~ 346 (412)
...++.++|+..|+.+.+-.
T Consensus 148 ~l~~l~~~a~~lGme~LvEv 167 (695)
T PRK13802 148 QLKHLLDLAHELGMTVLVET 167 (695)
T ss_pred HHHHHHHHHHHcCCeEEEEe
Confidence 67889999999999987644
No 483
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=21.20 E-value=7.7e+02 Score=25.86 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=66.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeecCCC---CCCHHHHHHhHHHhhcccCCeEEeCCCCCCHHHHHHHHHcC--C--
Q 015161 240 NEGYKPQEAVEVLEKLYEMGVTPVLFEQPVH---RDDWEGLGHVSHIAKDKFGVSVAADESCRSLDDVKKIVKGN--L-- 312 (412)
Q Consensus 240 N~~~~~~~A~~~~~~l~~~~l~~~~iEeP~~---~~d~~~~~~l~~~~~~~~~ipIa~dEs~~~~~~~~~~i~~~--a-- 312 (412)
|..+++++-++++++|..+++. +||=-+| .++++..+.+++. .--.|....-.-+...++++.+++. +
T Consensus 73 ga~~~~~qK~eiar~L~~~gvd--~IEv~fP~aSe~~~~~~~~i~k~---~g~~~~I~~l~rc~~~di~~tvEAl~~aKr 147 (560)
T KOG2367|consen 73 GAFLTTEQKLEIARQLAKLGVD--IIEVGFPVASEQDFEDCKTIAKT---LGYVPVICTLIRCHMDDIERTVEALKYAKR 147 (560)
T ss_pred CCcCCcHHHHHHHHHHHhcCcC--EEEecCcccCcchHHHHHHHHHh---CCCCceEEEeeccchHHHHHHHHHhhccCc
Confidence 3457899999999999999985 8886665 3567777777642 2235555555555667888877753 3
Q ss_pred --CCEEE--------ecCCCC--c-HHHHHHHHHHHHHcC-CcEEEcc
Q 015161 313 --ADVIN--------IKLAKV--G-VLGALEIIEVVRASG-LNLMIGG 346 (412)
Q Consensus 313 --~d~v~--------ik~~~~--G-it~~l~i~~~A~~~g-i~~~~~~ 346 (412)
++.+. .+..+. = +.-+.+++.+++..| +.+-.++
T Consensus 148 ~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSp 195 (560)
T KOG2367|consen 148 PRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSP 195 (560)
T ss_pred ceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECc
Confidence 44443 222222 2 445778889999988 5555544
No 484
>PRK05443 polyphosphate kinase; Provisional
Probab=21.08 E-value=2.1e+02 Score=31.52 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHH-cCCCEEeEecCCChhHHHHHHHHHHHh---CCCcEEEEeCCCCCCHHHHHHHHHHHHcCCCC
Q 015161 186 PIVSPAEAAELASKYRK-QGFTTLKLKVGKNLKEDIEVLRAIRAV---HPDSSFILDANEGYKPQEAVEVLEKLYEMGVT 261 (412)
Q Consensus 186 ~~~~~~~~~~~~~~~~~-~Gf~~~KiKvG~~~~~D~~~v~avr~~---~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~ 261 (412)
|..+.+.+.+..+++.. ---..||+-+-+ +..|-..++++.++ |-++.++|+...+++.+..+.+++.|++.|+.
T Consensus 346 PY~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr-~~~~s~iv~aL~~Aa~~Gk~V~vlve~karfde~~n~~~~~~L~~aGv~ 424 (691)
T PRK05443 346 PYESFDPVVEFLRQAAADPDVLAIKQTLYR-TSKDSPIVDALIEAAENGKQVTVLVELKARFDEEANIRWARRLEEAGVH 424 (691)
T ss_pred CccCchHHHHHHHHhccCCCeeEEEEEEEE-ecCCHHHHHHHHHHHHcCCEEEEEEccCccccHHHHHHHHHHHHHcCCE
Confidence 34444445555444322 122345554321 23345566666653 77899999999999988889999999999986
Q ss_pred C
Q 015161 262 P 262 (412)
Q Consensus 262 ~ 262 (412)
+
T Consensus 425 V 425 (691)
T PRK05443 425 V 425 (691)
T ss_pred E
Confidence 4
No 485
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=21.02 E-value=5.8e+02 Score=28.33 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred cccCCeEEeCCCCCCHHHH-HHHHHc-CCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchHHHHHHHHHH
Q 015161 286 DKFGVSVAADESCRSLDDV-KKIVKG-NLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETRLAMGFAGHL 360 (412)
Q Consensus 286 ~~~~ipIa~dEs~~~~~~~-~~~i~~-~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~i~~~a~~hl 360 (412)
....+||+.|.|.+..-+. .+++.. ..++-+++| -|-....+.+.+++++|..++..++-|.+.+.-.--++
T Consensus 95 ~~~~vPlMIDSs~~eviEagLk~~qGk~ivNSis~e---ege~~f~~~~~LvkkYGaaVVvma~DE~GqA~t~eRK~ 168 (842)
T COG1410 95 NEPTVPLMIDSSEWEVIEAGLKCAQGKCIVNSINYE---EGEERFEKVAELVKKYGAAVVVMTIDEEGQARTAERKF 168 (842)
T ss_pred cCCCCceEEehhHHHHHHHHHhhccCceeeeeeeec---ccHHHHHHHHHHHHHhCCcEEEEeeccccccccHHHHH
Confidence 3456899999887654332 222221 223333333 35567888999999999999998877776544444333
No 486
>PRK05927 hypothetical protein; Provisional
Probab=20.94 E-value=2.8e+02 Score=27.69 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEecCCChhHHH----HHHHHHHHhCCCcEE---------EEeCCCCCCHHHHHHH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKVGKNLKEDI----EVLRAIRAVHPDSSF---------ILDANEGYKPQEAVEV 251 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~----~~v~avr~~~~~~~l---------~vDaN~~~~~~~A~~~ 251 (412)
.+++++.+.+++..+.|++.+=+--|.+++.++ +.++.|++.+|++.+ .+-.+.+...++.++.
T Consensus 76 ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 76 LSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 478999999999999999999986554444344 456777777777654 1234456666554443
No 487
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=20.92 E-value=6.7e+02 Score=23.40 Aligned_cols=131 Identities=11% Similarity=0.046 Sum_probs=73.1
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCC--CcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHP--DSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~--~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
|....+-+.+|+... +.+.+.|...+-+.+-.. ..-.+.++.+|+.|- ...+.+..+. ..+....++..++-
T Consensus 70 ~~DvHLMv~~P~~~i---~~~~~aGad~It~H~Ea~-~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~ 143 (228)
T PRK08091 70 FKDVHLMVRDQFEVA---KACVAAGADIVTLQVEQT-HDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDL 143 (228)
T ss_pred CEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc-ccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCE
Confidence 444455556777654 456677999999888631 122356788888876 6667766554 44555556665543
Q ss_pred C---CCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEe
Q 015161 258 M---GVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINI 318 (412)
Q Consensus 258 ~---~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~i 318 (412)
. .+.|-+=-|.+.+.-++-.+++++...+ ...+.|..|=.+. .+.+.++.++| +|++..
T Consensus 144 VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aG-aD~~V~ 206 (228)
T PRK08091 144 IQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQ-IDWVVS 206 (228)
T ss_pred EEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCC-CCEEEE
Confidence 1 1122234455544444445555432222 2245566665543 55666666666 566644
No 488
>KOG4141 consensus DNA repair and recombination protein RAD52/RAD22 [Replication, recombination and repair]
Probab=20.91 E-value=1.4e+02 Score=27.56 Aligned_cols=50 Identities=14% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCCcccccccccceeeEEeEEEEEEEEeccccceeccCceeeeeeEEEEEEEECCCcE----EEEE
Q 015161 31 APTSFSFKNLTQTFTVDVQRAENRPLNVPLIAPFTIATSRLDQVENVAIRIELSNGCV----GWGE 92 (412)
Q Consensus 31 ~~~~~~~~~~~~~~~mkI~~i~~~~~~~pl~~pf~~a~~~~~~~~~~lV~v~t~~G~~----G~GE 92 (412)
|-..|+|.- -++.|+++.+..+.. ..+.+.-.-.++|||+..||.. |||+
T Consensus 75 ANeiFGyNG----Ws~sI~~~~vd~~d~--------~~~k~~vg~~a~VrVtLkDGtyhEDiGyG~ 128 (222)
T KOG4141|consen 75 ANEIFGYNG----WSSSITSVNVDFVDE--------EEGKFSVGVSAIVRVTLKDGTYHEDIGYGS 128 (222)
T ss_pred HHHHhCcCc----ccccceeeecceecc--------ccCeEEEeEEEEEEEEEecCcccccccccc
Confidence 344555433 356888888877764 2233333457899999999954 8883
No 489
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.80 E-value=7.4e+02 Score=23.62 Aligned_cols=79 Identities=13% Similarity=0.239 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHcCCCCCceeecCCCCCCHHHHHHhHHHhhccc-CCeEEeCCC-CCC--HHHHHHHHHcCCCCEEE
Q 015161 242 GYKPQEAVEVLEKLYEMGVTPVLFEQPVHRDDWEGLGHVSHIAKDKF-GVSVAADES-CRS--LDDVKKIVKGNLADVIN 317 (412)
Q Consensus 242 ~~~~~~A~~~~~~l~~~~l~~~~iEeP~~~~d~~~~~~l~~~~~~~~-~ipIa~dEs-~~~--~~~~~~~i~~~a~d~v~ 317 (412)
.++++..+++++.+.+.+.....+-+-+-.-......++.+.++++. ++||...=. -.+ ......+++.| ++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aG-a~~id 223 (274)
T cd07938 145 EVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAG-VRRFD 223 (274)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhC-CCEEE
Confidence 56778888888888877765456677666655666666555555544 366654321 112 22334455666 46554
Q ss_pred ecCC
Q 015161 318 IKLA 321 (412)
Q Consensus 318 ik~~ 321 (412)
.-+.
T Consensus 224 ~t~~ 227 (274)
T cd07938 224 SSVG 227 (274)
T ss_pred Eecc
Confidence 4333
No 490
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.74 E-value=2.7e+02 Score=23.18 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCEE-EecCCCCc--HHHHHHHHHHHHHcCCcEEEc
Q 015161 302 DDVKKIVKGNLADVI-NIKLAKVG--VLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 302 ~~~~~~i~~~a~d~v-~ik~~~~G--it~~l~i~~~A~~~gi~~~~~ 345 (412)
..+.+.+..+.+|++ .-++.++| ..++.++...+..+|+.++.-
T Consensus 55 ~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~ 101 (148)
T smart00857 55 QRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKGVRLVSV 101 (148)
T ss_pred HHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCCCEEEEC
Confidence 344444556666664 45688888 778999999999999998764
No 491
>PF00608 Adeno_shaft: Adenoviral fibre protein (repeat/shaft region); InterPro: IPR000939 Adenoviruses are responsible for diseases such as pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. Viral infection commences with recognition of host cell receptors by means of specialised proteins on viral surfaces. Specific attachment of adenovirus is achieved through interactions between host-cell receptors and the adenovirus fibre protein and is mediated by the globular carboxy-terminal domain of the adenovirus fibre protein, rather than the 'shaft' region represented by this family. The alignment of this family contains two copies of a fifteen residue repeat found in the 'shaft' region of adenoviral fibre proteins.; GO: 0007155 cell adhesion, 0009405 pathogenesis, 0019062 virion attachment to host cell surface receptor; PDB: 1V1H_A 1QIU_D 1V1I_B.
Probab=20.72 E-value=76 Score=19.49 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=14.1
Q ss_pred CCceeeeCcEEeeCCCCCcccc
Q 015161 384 LDGYEVSGAVYKFTNARGHGGF 405 (412)
Q Consensus 384 ~~~~~~~~G~~~~p~~pGlG~~ 405 (412)
..|++++++.+.+.-++||-++
T Consensus 9 g~pL~v~n~~L~l~~g~gL~~~ 30 (30)
T PF00608_consen 9 GPPLTVSNNALTLKLGSGLTVD 30 (30)
T ss_dssp -TTEEE-TS-EEE-B-TTEEEE
T ss_pred CCCEEEeCCeEEEeeCCCeecC
Confidence 3578999999999999998763
No 492
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=20.62 E-value=7.3e+02 Score=23.48 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHcCCCEEeEec-----C---CChhHHHHHH----HHHHHhCCCcEEEEeCCCCCCHHHHHH
Q 015161 188 VSPAEAAELASKYRKQGFTTLKLKV-----G---KNLKEDIEVL----RAIRAVHPDSSFILDANEGYKPQEAVE 250 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~~Gf~~~KiKv-----G---~~~~~D~~~v----~avr~~~~~~~l~vDaN~~~~~~~A~~ 250 (412)
.+.+++.+.+.++.+.|-..+-+-. | .+.+++++++ +.+++.. ++.|.+|....=-.+.|++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~-~~plSIDT~~~~v~e~al~ 94 (257)
T cd00739 21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL-DVLISVDTFRAEVARAALE 94 (257)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCcEEEeCCCHHHHHHHHH
Confidence 3678889999999999999998852 2 1445666664 4454433 6789999755433444443
No 493
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=20.62 E-value=7.1e+02 Score=23.88 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=42.5
Q ss_pred CHHHH----HHHHHHHHHcCCCEEeEecC---C----ChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc
Q 015161 189 SPAEA----AELASKYRKQGFTTLKLKVG---K----NLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE 257 (412)
Q Consensus 189 ~~~~~----~~~~~~~~~~Gf~~~KiKvG---~----~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~ 257 (412)
++++. .+.++.+++.|+. +-+-+. . +++.=.+.++++.+.|.+.--..|..+..+|.+..++++.+.+
T Consensus 109 t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 109 TPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred CHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHh
Confidence 55554 3444555667752 222221 1 2333344556666667776566799999999999999998865
No 494
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=20.38 E-value=6.9e+02 Score=23.14 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=76.8
Q ss_pred eeceeecCCCHHHHHHHHHHHHHcCCCEEeEecCCChhHHHHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHHHHHHHc--
Q 015161 180 TTDITIPIVSPAEAAELASKYRKQGFTTLKLKVGKNLKEDIEVLRAIRAVHPDSSFILDANEGYKPQEAVEVLEKLYE-- 257 (412)
Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~D~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~-- 257 (412)
|....+-+.+|+... +.+.+.|...+-++.-.. ..-.+.++.+|+.|-...|.+..... .+....++..++-
T Consensus 64 ~~dvHLMv~~P~~~i---~~~~~~gad~I~~H~Ea~-~~~~~~l~~Ir~~g~k~GlalnP~T~--~~~i~~~l~~vD~Vl 137 (223)
T PRK08745 64 PIDVHLMVEPVDRIV---PDFADAGATTISFHPEAS-RHVHRTIQLIKSHGCQAGLVLNPATP--VDILDWVLPELDLVL 137 (223)
T ss_pred CEEEEeccCCHHHHH---HHHHHhCCCEEEEcccCc-ccHHHHHHHHHHCCCceeEEeCCCCC--HHHHHHHHhhcCEEE
Confidence 334444455676654 445667999999888631 12235678888887677777766643 3444456555542
Q ss_pred -CCCCCceeecCCCCCCHHHHHHhHHHhhc-ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEec
Q 015161 258 -MGVTPVLFEQPVHRDDWEGLGHVSHIAKD-KFGVSVAADESCRSLDDVKKIVKGNLADVINIK 319 (412)
Q Consensus 258 -~~l~~~~iEeP~~~~d~~~~~~l~~~~~~-~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik 319 (412)
..++|-+--|.+-++-++..+++++...+ ...+.|..|=.+ +.+.+..+.+.| +|++..-
T Consensus 138 vMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aG-aDi~V~G 199 (223)
T PRK08745 138 VMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAG-ADTFVAG 199 (223)
T ss_pred EEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcC-CCEEEEC
Confidence 11222345666666556666666543222 224556666553 466777777777 4777553
No 495
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=20.28 E-value=8.2e+02 Score=23.95 Aligned_cols=22 Identities=18% Similarity=0.055 Sum_probs=12.9
Q ss_pred HHHHHHHcCCcEEEccCcchHH
Q 015161 331 IIEVVRASGLNLMIGGMVETRL 352 (412)
Q Consensus 331 i~~~A~~~gi~~~~~~~~es~i 352 (412)
+..+.++.++++.-.+-+.++-
T Consensus 231 v~~~~~~~~ipIig~GGI~s~~ 252 (334)
T PRK07565 231 IAILSGRVGADLAATTGVHDAE 252 (334)
T ss_pred HHHHHhhcCCCEEEECCCCCHH
Confidence 3444455688887655555543
No 496
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=20.22 E-value=7.4e+02 Score=23.43 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=42.6
Q ss_pred ccCCeEEeCCCCCCHHHHHHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEc
Q 015161 287 KFGVSVAADESCRSLDDVKKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIG 345 (412)
Q Consensus 287 ~~~ipIa~dEs~~~~~~~~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~ 345 (412)
..-+|++.+--+.+++|+++++..| +|=+.+...- +...--+.+.|+.+|..|++-
T Consensus 72 ~vfiPltVGGGI~s~eD~~~ll~aG-ADKVSINsaA--v~~p~lI~~~a~~FGsQciVv 127 (256)
T COG0107 72 QVFIPLTVGGGIRSVEDARKLLRAG-ADKVSINSAA--VKDPELITEAADRFGSQCIVV 127 (256)
T ss_pred hceeeeEecCCcCCHHHHHHHHHcC-CCeeeeChhH--hcChHHHHHHHHHhCCceEEE
Confidence 5679999999999999999999998 4655554221 343445788899999998763
No 497
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.12 E-value=7.6e+02 Score=23.51 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=33.0
Q ss_pred CHHHH-HHHHHcCCCCEEEecCCCCcHHHHHHHHHHHHHcCCcEEEccCcchH
Q 015161 300 SLDDV-KKIVKGNLADVINIKLAKVGVLGALEIIEVVRASGLNLMIGGMVETR 351 (412)
Q Consensus 300 ~~~~~-~~~i~~~a~d~v~ik~~~~Git~~l~i~~~A~~~gi~~~~~~~~es~ 351 (412)
+.+.| +++.+.|.-.++.+|+. +.+..++...|+++|+..++=....|+
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP---~ee~~~~~~~~~~~gi~~I~lv~PtT~ 156 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP---YEESDYLISVCNLYNIELILLIAPTSS 156 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC---HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 45554 44555665555667765 467888999999999998765444443
Done!