BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015162
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna
Binding Domain From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr3023c
Length = 125
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 71/109 (65%), Gaps = 12/109 (11%)
Query: 8 GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
G SN PA FL K + +V DP T++L+ WS SG SF V++ FAK++LP YFKHNN +SF
Sbjct: 13 GPSNVPA-FLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASF 71
Query: 68 VRQLNTYGFRKI-----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
VRQLN YGFRK+ + D EF + F+RGQ LL+NI R+
Sbjct: 72 VRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRK 120
>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
pdb|1HKT|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila
Heat Shock Transcription Factor
Length = 106
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 10 SNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVR 69
S PA FL K + +VDD TN L+ W++ G SF++ N FAK+LLPL +KHNN +SF+R
Sbjct: 2 SGVPA-FLAKLWRLVDDADTNRLICWTKDGQSFVIQNQAQFAKELLPLNYKHNNMASFIR 60
Query: 70 QLNTYGFRKI----------DPDQWEFANEEFIRGQRHLLKNIHRR 105
QLN YGF KI D D+ EF++ F R LL I R+
Sbjct: 61 QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106
>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX
Length = 102
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 54/93 (58%), Gaps = 12/93 (12%)
Query: 8 GSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSF 67
GS PA F+ K + MV+D + WS SG S +V N F +++LP YFKH+NF+SF
Sbjct: 8 GSMARPA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASF 66
Query: 68 VRQLNTYGFRKI-----------DPDQWEFANE 89
VRQLN YG+ K+ + +WEF NE
Sbjct: 67 VRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99
>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|1FYM|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Tail-To-Tail Orientation
pdb|2HTS|A Chain A, Crystal Structure Of The Dna Binding Domain Of The Heat
Shock Transcription Factor
pdb|3HSF|A Chain A, Heat Shock Transcription Factor (Hsf)
Length = 92
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
PA F+ K + MV+D + WS SG S +V N F +++LP YFKH+NF+SFVRQLN
Sbjct: 3 PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61
Query: 73 TYGFRKI-----------DPDQWEFANE 89
YG+ K+ + +WEF NE
Sbjct: 62 MYGWHKVQDVKSGSMLSNNDSRWEFENE 89
>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
pdb|1FBU|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Length = 90
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
PA F+ K + MV+D + WS SG S +V N F +++LP YFKH+NF+SFVRQLN
Sbjct: 1 PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
YG+ K+ + +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
pdb|1FBS|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237a Mutation
Length = 90
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
PA F+ K + MV+D + WS SG S +V N F +++L YFKH+NF+SFVRQLN
Sbjct: 1 PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLAKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
YG+ K+ + +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
pdb|1FBQ|B Chain B, Heat Shock Transcription Factor Dna Binding Domain
Containing The P237k Mutation
Length = 90
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
PA F+ K + MV+D + WS SG S +V N F +++L YFKH+NF+SFVRQLN
Sbjct: 1 PA-FVNKLWSMVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLKKYFKHSNFASFVRQLN 59
Query: 73 TYGFRKI-----------DPDQWEFANE 89
YG+ K+ + +WEF NE
Sbjct: 60 MYGWHKVQDVKSGSMLSNNDSRWEFENE 87
>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna That Is Translationally Disordered
pdb|1FYL|A Chain A, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
pdb|1FYL|B Chain B, Serendipitous Crystal Structure Containing The Heat
Shock Transcription Factor's Dna Binding Domain And
Cognate Dna In A Head-To-Head Orientation
Length = 92
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 12/88 (13%)
Query: 13 PAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLN 72
PA F+ K + V+D + WS SG S +V N F +++LP YFKH+NF+SFVRQLN
Sbjct: 3 PA-FVNKLWSXVNDKSNEKFIHWSTSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLN 61
Query: 73 TYGFRKI-----------DPDQWEFANE 89
YG+ K+ + +WEF NE
Sbjct: 62 XYGWHKVQDVKSGSXLSNNDSRWEFENE 89
>pdb|4AIP|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|B Chain B, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
pdb|4AIP|C Chain C, The Frpb Iron Transporter From Neisseria Meningitidis
(f3-3 Variant)
Length = 742
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 89 EEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERN 125
EEF G + NI R+ P + +TQS T + T +N
Sbjct: 283 EEFTVGDKSSRINIDRQAPAYRETTQSNTNLAYTGKN 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,668,984
Number of Sequences: 62578
Number of extensions: 455749
Number of successful extensions: 821
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 15
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)