Query 015162
Match_columns 412
No_of_seqs 248 out of 1032
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0627 Heat shock transcripti 100.0 3.1E-44 6.8E-49 355.0 9.8 192 6-197 5-209 (304)
2 smart00415 HSF heat shock fact 100.0 2E-34 4.4E-39 245.0 4.8 94 12-105 1-105 (105)
3 PF00447 HSF_DNA-bind: HSF-typ 100.0 2E-34 4.4E-39 243.5 3.3 93 15-107 1-102 (103)
4 COG5169 HSF1 Heat shock transc 100.0 1.5E-33 3.2E-38 275.8 4.7 155 7-167 4-170 (282)
5 PF00178 Ets: Ets-domain; Int 95.3 0.0057 1.2E-07 50.7 0.5 58 17-75 5-65 (85)
6 smart00413 ETS erythroblast tr 93.3 0.075 1.6E-06 44.4 2.9 57 18-74 6-64 (87)
7 COG3074 Uncharacterized protei 92.8 0.51 1.1E-05 37.9 6.8 53 127-182 23-75 (79)
8 KOG3806 Predicted transcriptio 89.9 0.33 7.2E-06 45.4 3.6 60 15-74 70-131 (177)
9 PRK15422 septal ring assembly 89.8 1.8 4E-05 35.5 7.3 53 127-179 23-75 (79)
10 PF11932 DUF3450: Protein of u 89.0 2.4 5.3E-05 41.2 9.1 63 123-185 50-112 (251)
11 PF06005 DUF904: Protein of un 88.3 5.4 0.00012 32.1 9.0 51 130-180 19-69 (72)
12 PF12325 TMF_TATA_bd: TATA ele 87.0 4.4 9.5E-05 35.8 8.5 61 121-181 29-92 (120)
13 PF04340 DUF484: Protein of un 86.9 2.5 5.4E-05 40.4 7.6 77 87-189 17-93 (225)
14 PF02183 HALZ: Homeobox associ 86.6 2.1 4.4E-05 31.5 5.2 41 127-167 3-43 (45)
15 PF10473 CENP-F_leu_zip: Leuci 86.4 5.1 0.00011 36.3 8.8 60 124-183 54-113 (140)
16 PF06005 DUF904: Protein of un 86.0 9.1 0.0002 30.8 9.2 60 125-184 7-66 (72)
17 PF10168 Nup88: Nuclear pore c 85.1 3.6 7.9E-05 46.3 8.8 62 126-187 562-623 (717)
18 PF08826 DMPK_coil: DMPK coile 82.0 7.9 0.00017 30.3 7.0 46 124-169 13-58 (61)
19 PF06156 DUF972: Protein of un 81.8 5.5 0.00012 34.4 6.8 47 125-171 11-57 (107)
20 TIGR02894 DNA_bind_RsfA transc 81.5 7.3 0.00016 36.1 7.8 52 131-182 99-150 (161)
21 PF10779 XhlA: Haemolysin XhlA 81.4 16 0.00035 28.9 8.8 57 126-182 3-59 (71)
22 PF04111 APG6: Autophagy prote 80.8 12 0.00027 38.0 9.9 57 122-178 43-99 (314)
23 PF10224 DUF2205: Predicted co 77.9 20 0.00044 29.5 8.5 47 138-184 18-64 (80)
24 PRK13169 DNA replication intia 77.5 8.2 0.00018 33.7 6.4 45 125-169 11-55 (110)
25 PF12329 TMF_DNA_bd: TATA elem 76.2 21 0.00045 28.8 8.0 58 124-181 14-71 (74)
26 PRK15422 septal ring assembly 75.8 29 0.00064 28.6 8.8 56 125-180 7-69 (79)
27 PF03310 Cauli_DNA-bind: Cauli 73.6 6.3 0.00014 34.9 4.7 53 140-195 3-55 (121)
28 PF02403 Seryl_tRNA_N: Seryl-t 73.5 35 0.00076 28.6 9.3 63 122-184 36-101 (108)
29 COG3883 Uncharacterized protei 72.1 19 0.00042 36.0 8.3 61 126-190 56-116 (265)
30 PRK10803 tol-pal system protei 71.5 23 0.00051 34.9 8.8 46 138-183 56-101 (263)
31 PF04880 NUDE_C: NUDE protein, 70.8 2.4 5.2E-05 39.5 1.6 37 127-168 19-55 (166)
32 KOG4460 Nuclear pore complex, 70.5 23 0.0005 38.9 8.9 60 130-189 589-648 (741)
33 COG3074 Uncharacterized protei 70.3 30 0.00065 28.0 7.4 51 126-176 8-58 (79)
34 PF08614 ATG16: Autophagy prot 69.8 37 0.0008 31.8 9.4 55 128-182 129-183 (194)
35 PF11932 DUF3450: Protein of u 69.6 32 0.0007 33.4 9.3 59 126-184 46-104 (251)
36 PRK10884 SH3 domain-containing 69.6 24 0.00051 33.9 8.1 29 74-102 65-95 (206)
37 TIGR02449 conserved hypothetic 67.4 62 0.0013 25.8 8.8 47 128-181 13-59 (65)
38 PF11559 ADIP: Afadin- and alp 67.4 39 0.00084 30.2 8.7 50 125-174 55-104 (151)
39 PRK00888 ftsB cell division pr 67.3 10 0.00023 32.5 4.7 35 130-164 28-62 (105)
40 PRK10963 hypothetical protein; 67.2 17 0.00038 34.9 6.8 77 87-189 14-90 (223)
41 COG1579 Zn-ribbon protein, pos 67.0 19 0.00042 35.4 7.1 56 118-173 85-140 (239)
42 PRK09039 hypothetical protein; 66.8 37 0.00079 35.0 9.4 10 13-22 16-25 (343)
43 TIGR02449 conserved hypothetic 66.7 21 0.00046 28.3 5.9 47 125-171 17-63 (65)
44 TIGR03752 conj_TIGR03752 integ 65.1 40 0.00087 36.3 9.5 38 125-162 69-106 (472)
45 KOG4005 Transcription factor X 64.3 31 0.00067 34.1 7.7 43 125-167 93-135 (292)
46 PF07106 TBPIP: Tat binding pr 64.1 33 0.00072 31.3 7.7 35 121-155 71-105 (169)
47 PF10211 Ax_dynein_light: Axon 62.4 41 0.0009 31.7 8.2 33 126-158 124-156 (189)
48 COG4942 Membrane-bound metallo 62.4 42 0.00092 35.7 8.9 63 123-185 60-125 (420)
49 PF07106 TBPIP: Tat binding pr 62.3 42 0.00091 30.6 8.0 57 121-177 78-136 (169)
50 PRK11637 AmiB activator; Provi 62.0 42 0.0009 35.2 9.0 56 127-182 80-135 (428)
51 TIGR02132 phaR_Bmeg polyhydrox 61.0 44 0.00094 31.7 7.8 56 127-182 84-139 (189)
52 PF11559 ADIP: Afadin- and alp 59.8 74 0.0016 28.4 9.0 44 128-171 72-115 (151)
53 PRK10884 SH3 domain-containing 59.1 44 0.00095 32.1 7.8 21 148-168 137-157 (206)
54 TIGR00414 serS seryl-tRNA synt 58.9 54 0.0012 34.6 9.1 63 122-184 37-103 (418)
55 PRK11637 AmiB activator; Provi 58.2 57 0.0012 34.2 9.2 44 127-170 73-116 (428)
56 PF09726 Macoilin: Transmembra 57.8 34 0.00074 38.6 7.8 15 125-139 421-435 (697)
57 PF08317 Spc7: Spc7 kinetochor 57.6 52 0.0011 33.4 8.5 40 133-172 213-252 (325)
58 PF06785 UPF0242: Uncharacteri 57.6 43 0.00094 34.7 7.7 41 127-167 132-172 (401)
59 PF09744 Jnk-SapK_ap_N: JNK_SA 57.2 48 0.001 30.6 7.4 18 165-182 132-149 (158)
60 PF10224 DUF2205: Predicted co 56.9 50 0.0011 27.2 6.7 45 123-167 17-61 (80)
61 PF04156 IncA: IncA protein; 56.7 80 0.0017 29.0 9.0 60 125-184 91-150 (191)
62 PF12718 Tropomyosin_1: Tropom 56.7 78 0.0017 28.5 8.6 40 128-167 20-59 (143)
63 PF00038 Filament: Intermediat 56.5 77 0.0017 31.4 9.4 47 125-171 212-258 (312)
64 PRK05431 seryl-tRNA synthetase 56.5 59 0.0013 34.4 8.9 64 122-185 35-101 (425)
65 PF10473 CENP-F_leu_zip: Leuci 56.4 93 0.002 28.3 9.0 46 128-173 51-96 (140)
66 PF07200 Mod_r: Modifier of ru 56.4 61 0.0013 28.8 7.9 55 124-178 36-90 (150)
67 PLN02678 seryl-tRNA synthetase 56.2 64 0.0014 34.6 9.2 64 122-185 40-106 (448)
68 PRK00295 hypothetical protein; 55.9 52 0.0011 26.1 6.5 41 127-167 10-50 (68)
69 PF04728 LPP: Lipoprotein leuc 55.2 97 0.0021 24.0 7.8 41 127-167 8-48 (56)
70 PF05377 FlaC_arch: Flagella a 54.8 77 0.0017 24.5 6.9 23 160-182 24-46 (55)
71 PF05377 FlaC_arch: Flagella a 54.4 36 0.00079 26.2 5.1 26 141-166 12-37 (55)
72 PF14282 FlxA: FlxA-like prote 53.8 1E+02 0.0022 26.4 8.4 44 128-171 18-65 (106)
73 PF04102 SlyX: SlyX; InterPro 53.8 39 0.00084 26.7 5.4 42 127-168 9-50 (69)
74 COG3159 Uncharacterized protei 52.9 27 0.00059 33.9 5.2 23 84-106 12-34 (218)
75 PF08581 Tup_N: Tup N-terminal 52.8 1.1E+02 0.0023 25.2 7.9 49 131-179 6-61 (79)
76 PF10805 DUF2730: Protein of u 52.6 76 0.0016 27.1 7.5 52 125-176 38-91 (106)
77 PF04420 CHD5: CHD5-like prote 52.5 43 0.00094 30.7 6.4 63 123-185 41-108 (161)
78 PF00170 bZIP_1: bZIP transcri 52.4 39 0.00085 25.9 5.2 25 141-165 31-55 (64)
79 PF04728 LPP: Lipoprotein leuc 52.4 82 0.0018 24.4 6.7 49 129-177 3-51 (56)
80 COG1579 Zn-ribbon protein, pos 52.0 55 0.0012 32.3 7.3 51 123-173 32-82 (239)
81 PRK00736 hypothetical protein; 51.3 70 0.0015 25.3 6.5 41 127-167 10-50 (68)
82 PRK13729 conjugal transfer pil 51.2 66 0.0014 34.8 8.3 52 130-181 70-121 (475)
83 TIGR02894 DNA_bind_RsfA transc 50.4 65 0.0014 30.0 7.1 36 140-175 101-136 (161)
84 KOG4196 bZIP transcription fac 50.1 46 0.001 30.0 5.8 41 134-181 79-119 (135)
85 PF13874 Nup54: Nucleoporin co 50.1 72 0.0016 28.5 7.3 49 129-177 44-92 (141)
86 PRK13923 putative spore coat p 49.8 1.2E+02 0.0025 28.6 8.7 38 142-179 110-147 (170)
87 PF08317 Spc7: Spc7 kinetochor 49.6 1E+02 0.0022 31.2 9.2 7 70-76 69-75 (325)
88 PF04977 DivIC: Septum formati 49.6 39 0.00085 26.3 4.9 32 131-162 19-50 (80)
89 COG4467 Regulator of replicati 47.9 62 0.0013 28.3 6.1 44 125-168 11-54 (114)
90 PRK02793 phi X174 lysis protei 47.6 71 0.0015 25.6 6.1 8 156-163 42-49 (72)
91 PF12709 Kinetocho_Slk19: Cent 47.5 1.2E+02 0.0027 25.4 7.6 52 129-180 34-86 (87)
92 PF04201 TPD52: Tumour protein 47.2 46 0.00099 31.0 5.6 38 129-166 29-66 (162)
93 PF04102 SlyX: SlyX; InterPro 47.2 92 0.002 24.5 6.6 37 128-164 3-39 (69)
94 PRK00846 hypothetical protein; 46.9 77 0.0017 26.0 6.3 11 155-165 46-56 (77)
95 PRK14160 heat shock protein Gr 46.9 1.4E+02 0.0031 28.9 9.1 42 126-167 58-99 (211)
96 PF03904 DUF334: Domain of unk 46.5 1.3E+02 0.0027 29.6 8.7 57 128-184 42-106 (230)
97 PRK06800 fliH flagellar assemb 45.9 1.3E+02 0.0029 28.8 8.5 70 127-196 36-125 (228)
98 KOG0977 Nuclear envelope prote 45.8 69 0.0015 35.2 7.5 48 125-172 165-219 (546)
99 PRK06798 fliD flagellar cappin 45.3 83 0.0018 33.5 8.0 51 125-178 382-432 (440)
100 PF05278 PEARLI-4: Arabidopsis 45.1 1.4E+02 0.003 30.1 8.9 47 127-173 198-244 (269)
101 PF12325 TMF_TATA_bd: TATA ele 45.1 1.8E+02 0.0038 25.7 8.7 48 123-170 17-64 (120)
102 PF10805 DUF2730: Protein of u 45.1 1.1E+02 0.0024 26.1 7.4 49 128-176 48-98 (106)
103 PRK14148 heat shock protein Gr 45.1 1.4E+02 0.003 28.5 8.7 41 127-167 38-78 (195)
104 COG1382 GimC Prefoldin, chaper 44.7 80 0.0017 28.0 6.4 40 128-167 69-108 (119)
105 PF14077 WD40_alt: Alternative 44.6 29 0.00063 25.8 3.1 35 153-187 14-48 (48)
106 smart00787 Spc7 Spc7 kinetocho 43.9 1.2E+02 0.0026 31.0 8.5 7 70-76 64-70 (312)
107 PF02183 HALZ: Homeobox associ 43.7 59 0.0013 23.8 4.6 27 127-153 10-36 (45)
108 COG2433 Uncharacterized conser 43.5 1.2E+02 0.0027 33.7 9.0 43 126-168 426-468 (652)
109 PF00170 bZIP_1: bZIP transcri 43.5 1.1E+02 0.0024 23.4 6.5 33 131-163 28-60 (64)
110 PF12329 TMF_DNA_bd: TATA elem 43.3 55 0.0012 26.3 4.9 37 140-176 16-52 (74)
111 PRK00295 hypothetical protein; 42.8 1.6E+02 0.0034 23.3 7.3 23 128-150 4-26 (68)
112 PF13747 DUF4164: Domain of un 42.4 1.4E+02 0.003 24.9 7.3 44 140-183 36-79 (89)
113 PF13094 CENP-Q: CENP-Q, a CEN 42.4 1.4E+02 0.003 27.0 8.0 50 128-177 33-82 (160)
114 PF15188 CCDC-167: Coiled-coil 42.4 35 0.00076 28.5 3.7 32 119-150 33-64 (85)
115 PRK04325 hypothetical protein; 42.2 1.7E+02 0.0037 23.5 7.6 40 127-166 14-53 (74)
116 PLN02320 seryl-tRNA synthetase 42.0 1.1E+02 0.0024 33.4 8.3 96 86-184 66-164 (502)
117 PRK10803 tol-pal system protei 42.0 84 0.0018 31.0 7.0 50 129-178 40-89 (263)
118 COG4026 Uncharacterized protei 41.8 1.4E+02 0.003 29.5 8.1 37 128-171 141-177 (290)
119 TIGR03752 conj_TIGR03752 integ 41.7 1.2E+02 0.0025 33.0 8.3 42 125-166 62-103 (472)
120 COG5481 Uncharacterized conser 41.4 1.3E+02 0.0029 23.6 6.4 24 141-164 9-32 (67)
121 COG1730 GIM5 Predicted prefold 40.8 1.2E+02 0.0027 27.6 7.3 45 127-171 92-136 (145)
122 PF12718 Tropomyosin_1: Tropom 40.7 1.3E+02 0.0028 27.2 7.4 20 129-148 35-54 (143)
123 PF11853 DUF3373: Protein of u 40.5 22 0.00048 38.5 2.8 28 129-157 25-52 (489)
124 smart00338 BRLZ basic region l 40.1 1.1E+02 0.0024 23.3 6.1 29 139-167 29-57 (65)
125 PRK14143 heat shock protein Gr 39.8 1.8E+02 0.0039 28.7 8.7 39 129-167 67-105 (238)
126 PRK14163 heat shock protein Gr 39.7 1.6E+02 0.0035 28.6 8.3 38 125-162 43-80 (214)
127 COG4942 Membrane-bound metallo 39.5 1.7E+02 0.0037 31.2 9.1 37 128-164 72-108 (420)
128 PF03127 GAT: GAT domain; Int 39.3 1.6E+02 0.0034 24.6 7.3 72 125-198 7-78 (100)
129 PRK14154 heat shock protein Gr 39.3 1.5E+02 0.0033 28.6 8.0 40 125-164 55-94 (208)
130 PF07407 Seadorna_VP6: Seadorn 39.1 1.1E+02 0.0024 31.7 7.3 29 122-150 32-60 (420)
131 PHA02562 46 endonuclease subun 39.1 1.5E+02 0.0033 31.6 9.0 53 138-190 360-418 (562)
132 KOG3863 bZIP transcription fac 39.1 1.3E+02 0.0028 33.6 8.3 76 87-170 477-552 (604)
133 KOG4360 Uncharacterized coiled 39.0 1.4E+02 0.0031 32.7 8.4 55 129-183 226-280 (596)
134 COG1345 FliD Flagellar capping 38.7 1.1E+02 0.0024 33.2 7.7 57 124-183 424-480 (483)
135 PF10234 Cluap1: Clusterin-ass 38.7 2.1E+02 0.0045 28.8 9.1 34 129-162 183-216 (267)
136 cd00632 Prefoldin_beta Prefold 38.5 1.1E+02 0.0024 25.7 6.3 43 127-169 61-103 (105)
137 PHA01750 hypothetical protein 38.3 1.3E+02 0.0028 24.2 6.0 32 135-166 41-72 (75)
138 PF08781 DP: Transcription fac 38.0 1.4E+02 0.003 27.3 7.1 29 130-158 2-30 (142)
139 PF08912 Rho_Binding: Rho Bind 37.8 2.2E+02 0.0047 23.0 8.3 28 129-156 3-30 (69)
140 PF14282 FlxA: FlxA-like prote 37.5 1.4E+02 0.0031 25.5 6.8 53 121-173 18-74 (106)
141 PRK03947 prefoldin subunit alp 37.4 1.2E+02 0.0026 26.6 6.7 45 127-171 92-136 (140)
142 PF04912 Dynamitin: Dynamitin 37.3 1.2E+02 0.0025 31.6 7.5 48 122-169 87-144 (388)
143 PF07888 CALCOCO1: Calcium bin 37.2 1.6E+02 0.0035 32.5 8.6 9 49-57 76-84 (546)
144 PRK00846 hypothetical protein; 36.9 2.3E+02 0.005 23.2 7.6 6 129-134 13-18 (77)
145 PRK14127 cell division protein 36.8 1.1E+02 0.0024 26.7 6.0 37 131-167 32-68 (109)
146 PRK13729 conjugal transfer pil 36.8 1.1E+02 0.0023 33.3 7.1 46 128-173 75-120 (475)
147 PF02388 FemAB: FemAB family; 36.7 1.7E+02 0.0037 30.6 8.7 52 127-182 247-298 (406)
148 PF07716 bZIP_2: Basic region 36.3 90 0.002 23.2 4.8 26 138-163 27-52 (54)
149 PRK00736 hypothetical protein; 36.0 2.2E+02 0.0047 22.5 7.3 9 129-137 5-13 (68)
150 PF10146 zf-C4H2: Zinc finger- 35.9 1.9E+02 0.0042 28.3 8.3 52 131-182 34-85 (230)
151 PF07407 Seadorna_VP6: Seadorn 35.8 1.3E+02 0.0029 31.2 7.3 54 129-182 32-87 (420)
152 KOG2391 Vacuolar sorting prote 35.6 1.8E+02 0.0039 30.4 8.2 23 31-53 71-97 (365)
153 PF13942 Lipoprotein_20: YfhG 35.6 1.4E+02 0.0031 28.2 6.9 14 119-132 74-87 (179)
154 PF14662 CCDC155: Coiled-coil 35.6 2.1E+02 0.0045 27.5 8.1 31 134-164 79-109 (193)
155 PRK14162 heat shock protein Gr 35.3 2.2E+02 0.0047 27.2 8.3 32 126-157 43-74 (194)
156 PF07676 PD40: WD40-like Beta 35.3 16 0.00034 24.8 0.5 23 23-45 4-26 (39)
157 PF06156 DUF972: Protein of un 35.2 2.2E+02 0.0048 24.6 7.6 38 126-163 19-56 (107)
158 PF04849 HAP1_N: HAP1 N-termin 35.1 1.7E+02 0.0037 30.0 7.9 61 125-185 163-245 (306)
159 PF08172 CASP_C: CASP C termin 35.0 86 0.0019 31.0 5.8 38 127-164 84-121 (248)
160 PF04111 APG6: Autophagy prote 34.9 2.6E+02 0.0056 28.5 9.3 24 127-150 62-85 (314)
161 PRK14158 heat shock protein Gr 34.8 2.6E+02 0.0056 26.8 8.7 38 130-167 41-78 (194)
162 PRK13182 racA polar chromosome 34.8 1.4E+02 0.003 28.1 6.8 20 87-106 34-53 (175)
163 PRK05892 nucleoside diphosphat 34.7 1.4E+02 0.003 27.5 6.7 33 117-149 6-38 (158)
164 COG2433 Uncharacterized conser 34.3 1.9E+02 0.0042 32.3 8.7 14 12-25 299-312 (652)
165 PF10146 zf-C4H2: Zinc finger- 34.3 2.1E+02 0.0045 28.0 8.2 53 125-177 35-87 (230)
166 PF06216 RTBV_P46: Rice tungro 34.2 1.1E+02 0.0023 30.8 6.2 39 129-167 71-109 (389)
167 PRK14154 heat shock protein Gr 34.2 2E+02 0.0043 27.8 7.9 39 130-168 53-91 (208)
168 PF10018 Med4: Vitamin-D-recep 34.2 1.9E+02 0.0042 27.0 7.8 30 153-182 25-54 (188)
169 PRK14139 heat shock protein Gr 34.2 2.3E+02 0.0051 26.8 8.3 38 123-160 33-70 (185)
170 PRK14140 heat shock protein Gr 34.1 2.6E+02 0.0056 26.7 8.6 39 129-167 37-75 (191)
171 PRK15396 murein lipoprotein; P 34.0 2.4E+02 0.0051 23.2 7.2 42 126-167 29-70 (78)
172 smart00787 Spc7 Spc7 kinetocho 34.0 2.5E+02 0.0055 28.6 9.1 52 130-181 205-256 (312)
173 PF05266 DUF724: Protein of un 33.9 3.1E+02 0.0067 26.0 9.1 8 71-78 81-88 (190)
174 KOG0804 Cytoplasmic Zn-finger 33.8 1.9E+02 0.0042 31.2 8.3 52 130-181 348-399 (493)
175 KOG2751 Beclin-like protein [S 33.8 2.6E+02 0.0055 30.1 9.2 64 128-191 182-249 (447)
176 PRK06664 fliD flagellar hook-a 33.7 1.8E+02 0.0038 32.9 8.6 51 126-179 604-654 (661)
177 PF07989 Microtub_assoc: Micro 33.7 2.6E+02 0.0056 22.6 8.0 27 127-153 5-31 (75)
178 PF10212 TTKRSYEDQ: Predicted 33.5 1.6E+02 0.0035 32.3 7.8 8 158-165 470-477 (518)
179 KOG0709 CREB/ATF family transc 33.5 18 0.00039 38.8 0.8 31 130-160 280-310 (472)
180 TIGR00219 mreC rod shape-deter 33.5 98 0.0021 31.0 6.0 20 130-149 67-86 (283)
181 PRK14143 heat shock protein Gr 33.4 2.5E+02 0.0053 27.7 8.6 45 123-167 68-112 (238)
182 PRK10722 hypothetical protein; 33.2 1.4E+02 0.003 29.7 6.8 29 142-170 175-203 (247)
183 PF10018 Med4: Vitamin-D-recep 33.2 2.1E+02 0.0047 26.6 7.9 51 126-177 13-63 (188)
184 PF13747 DUF4164: Domain of un 32.9 2.9E+02 0.0063 23.0 8.2 47 125-171 35-81 (89)
185 TIGR02338 gimC_beta prefoldin, 32.8 1.4E+02 0.0031 25.4 6.1 40 128-167 66-105 (110)
186 PRK14155 heat shock protein Gr 32.4 2.2E+02 0.0049 27.4 8.0 37 124-160 15-51 (208)
187 KOG4571 Activating transcripti 32.2 1.9E+02 0.0041 29.4 7.7 30 138-167 250-279 (294)
188 PF11853 DUF3373: Protein of u 32.1 34 0.00074 37.1 2.6 26 144-169 32-57 (489)
189 PF07888 CALCOCO1: Calcium bin 32.0 2.5E+02 0.0054 31.1 9.1 10 138-147 173-182 (546)
190 PF09304 Cortex-I_coil: Cortex 31.9 2.5E+02 0.0054 24.5 7.3 51 121-171 22-72 (107)
191 PRK15396 murein lipoprotein; P 31.8 2.1E+02 0.0046 23.5 6.6 49 129-177 25-73 (78)
192 PF07200 Mod_r: Modifier of ru 31.8 3.2E+02 0.007 24.1 8.5 43 128-170 33-75 (150)
193 PRK07857 hypothetical protein; 31.8 2.1E+02 0.0044 24.9 6.9 64 129-192 28-94 (106)
194 PF14817 HAUS5: HAUS augmin-li 31.8 1.9E+02 0.0041 32.5 8.4 50 124-173 81-130 (632)
195 PF13815 Dzip-like_N: Iguana/D 31.7 1.1E+02 0.0025 26.4 5.4 40 131-170 68-107 (118)
196 PRK08032 fliD flagellar cappin 31.5 2E+02 0.0043 30.8 8.2 31 138-168 408-438 (462)
197 KOG4571 Activating transcripti 31.4 1.5E+02 0.0033 30.1 6.9 57 128-184 224-289 (294)
198 PF04899 MbeD_MobD: MbeD/MobD 31.3 2.8E+02 0.006 22.3 7.5 43 127-169 19-61 (70)
199 KOG0977 Nuclear envelope prote 31.3 1.5E+02 0.0032 32.7 7.3 42 126-167 152-193 (546)
200 PF05667 DUF812: Protein of un 31.3 2.5E+02 0.0055 31.3 9.2 61 126-187 332-392 (594)
201 PF15066 CAGE1: Cancer-associa 31.2 1.6E+02 0.0035 31.9 7.2 53 126-182 314-366 (527)
202 PRK07737 fliD flagellar cappin 30.9 1.7E+02 0.0037 31.7 7.7 44 127-173 446-489 (501)
203 PF11414 Suppressor_APC: Adeno 30.8 1.5E+02 0.0033 24.6 5.7 43 127-169 5-47 (84)
204 PRK08032 fliD flagellar cappin 30.8 1.5E+02 0.0033 31.6 7.3 42 126-170 410-451 (462)
205 PRK14145 heat shock protein Gr 30.7 2.9E+02 0.0063 26.5 8.3 40 128-167 44-83 (196)
206 PF02996 Prefoldin: Prefoldin 30.6 1.3E+02 0.0028 25.3 5.6 43 126-168 74-116 (120)
207 PF06160 EzrA: Septation ring 30.5 1.3E+02 0.0029 32.9 6.9 63 125-187 347-409 (560)
208 PRK14155 heat shock protein Gr 30.2 2.1E+02 0.0046 27.6 7.4 41 128-168 12-52 (208)
209 PRK14161 heat shock protein Gr 30.2 3.2E+02 0.0069 25.7 8.5 34 134-167 24-57 (178)
210 PF07334 IFP_35_N: Interferon- 30.0 65 0.0014 26.4 3.3 8 200-207 37-44 (76)
211 PF06419 COG6: Conserved oligo 30.0 2.3E+02 0.005 31.5 8.7 58 126-183 49-106 (618)
212 PRK14157 heat shock protein Gr 29.9 2.7E+02 0.0058 27.4 8.1 41 126-166 81-121 (227)
213 KOG0250 DNA repair protein RAD 29.9 2.2E+02 0.0048 33.8 8.6 44 123-166 395-438 (1074)
214 PRK14153 heat shock protein Gr 29.6 2E+02 0.0044 27.4 7.1 37 131-167 35-71 (194)
215 KOG4057 Uncharacterized conser 29.6 3.8E+02 0.0083 24.9 8.5 61 125-185 15-75 (180)
216 PF13874 Nup54: Nucleoporin co 29.5 2.3E+02 0.005 25.2 7.2 62 124-185 32-93 (141)
217 PF10359 Fmp27_WPPW: RNA pol I 29.5 2.6E+02 0.0057 30.0 8.8 87 67-171 126-214 (475)
218 PF08614 ATG16: Autophagy prot 29.4 2.9E+02 0.0064 25.8 8.2 37 130-166 117-153 (194)
219 PRK14163 heat shock protein Gr 29.4 2.9E+02 0.0063 26.9 8.2 42 128-169 39-80 (214)
220 KOG4010 Coiled-coil protein TP 29.3 1.3E+02 0.0027 28.9 5.5 38 129-166 44-81 (208)
221 TIGR02209 ftsL_broad cell divi 29.2 1.4E+02 0.0031 23.7 5.3 34 130-163 25-58 (85)
222 PF07716 bZIP_2: Basic region 29.0 95 0.0021 23.1 3.9 23 127-149 30-52 (54)
223 PF03962 Mnd1: Mnd1 family; I 29.0 3.5E+02 0.0076 25.4 8.6 24 123-146 104-127 (188)
224 PF02994 Transposase_22: L1 tr 28.9 84 0.0018 32.7 4.8 59 125-183 108-170 (370)
225 PRK09343 prefoldin subunit bet 28.9 1.9E+02 0.0041 25.3 6.3 35 131-165 73-107 (121)
226 COG5613 Uncharacterized conser 28.8 1.9E+02 0.004 30.4 7.0 44 142-185 336-379 (400)
227 PRK13922 rod shape-determining 28.7 1.1E+02 0.0024 29.9 5.5 14 134-147 74-87 (276)
228 KOG0996 Structural maintenance 28.6 2.1E+02 0.0046 34.4 8.2 60 125-184 545-610 (1293)
229 PF08172 CASP_C: CASP C termin 28.5 2.1E+02 0.0046 28.3 7.3 49 122-170 86-134 (248)
230 PF09726 Macoilin: Transmembra 28.2 2.3E+02 0.005 32.2 8.3 33 134-166 543-575 (697)
231 KOG2391 Vacuolar sorting prote 27.9 2.6E+02 0.0057 29.2 7.9 9 158-166 250-258 (365)
232 PF13851 GAS: Growth-arrest sp 27.9 2.9E+02 0.0063 26.2 7.9 50 145-194 95-148 (201)
233 PRK14147 heat shock protein Gr 27.6 3.3E+02 0.0071 25.4 8.0 40 125-164 21-60 (172)
234 PF03961 DUF342: Protein of un 27.5 3E+02 0.0064 29.2 8.7 25 127-151 332-356 (451)
235 PF05103 DivIVA: DivIVA protei 27.4 43 0.00094 28.7 2.0 40 127-166 30-69 (131)
236 PF15619 Lebercilin: Ciliary p 27.4 2.6E+02 0.0057 26.6 7.5 27 130-156 13-39 (194)
237 PF08651 DASH_Duo1: DASH compl 27.4 2.3E+02 0.005 23.1 6.1 22 174-195 42-63 (78)
238 PF12777 MT: Microtubule-bindi 27.2 3.4E+02 0.0074 27.7 8.8 43 128-170 234-276 (344)
239 cd00890 Prefoldin Prefoldin is 27.2 2E+02 0.0044 24.3 6.2 41 127-167 85-125 (129)
240 PF13815 Dzip-like_N: Iguana/D 27.1 2.6E+02 0.0057 24.1 6.9 17 132-148 83-99 (118)
241 COG4026 Uncharacterized protei 27.1 3.8E+02 0.0082 26.6 8.5 45 132-176 131-175 (290)
242 PF10226 DUF2216: Uncharacteri 27.1 3.5E+02 0.0075 26.0 8.0 24 141-164 53-76 (195)
243 PF04849 HAP1_N: HAP1 N-termin 27.1 3.2E+02 0.0069 28.1 8.3 65 130-194 228-292 (306)
244 COG4372 Uncharacterized protei 27.0 3E+02 0.0066 29.4 8.2 47 124-170 118-164 (499)
245 TIGR03495 phage_LysB phage lys 26.8 4E+02 0.0087 24.1 8.1 38 130-167 41-78 (135)
246 KOG1103 Predicted coiled-coil 26.8 1.9E+02 0.0041 30.4 6.7 47 127-173 243-289 (561)
247 PF04012 PspA_IM30: PspA/IM30 26.7 3.5E+02 0.0077 25.4 8.3 31 143-173 105-135 (221)
248 KOG4603 TBP-1 interacting prot 26.6 3.7E+02 0.0081 25.6 8.0 52 127-178 91-144 (201)
249 PF10186 Atg14: UV radiation r 26.5 3.1E+02 0.0066 26.5 8.1 24 141-164 68-91 (302)
250 PF14193 DUF4315: Domain of un 26.5 2.8E+02 0.006 23.1 6.5 26 127-152 6-31 (83)
251 PRK13169 DNA replication intia 26.3 3.8E+02 0.0082 23.4 7.6 38 125-162 18-55 (110)
252 PF02403 Seryl_tRNA_N: Seryl-t 26.2 1.8E+02 0.0039 24.2 5.6 35 129-163 29-63 (108)
253 PRK14162 heat shock protein Gr 26.1 3.9E+02 0.0085 25.5 8.3 43 126-168 36-78 (194)
254 TIGR02977 phageshock_pspA phag 25.8 3.8E+02 0.0082 25.6 8.4 39 140-178 103-141 (219)
255 PF02344 Myc-LZ: Myc leucine z 25.8 1.6E+02 0.0034 20.3 4.0 25 125-149 4-28 (32)
256 KOG4196 bZIP transcription fac 25.8 3.1E+02 0.0066 24.9 7.0 55 128-182 46-113 (135)
257 PF06785 UPF0242: Uncharacteri 25.6 2.3E+02 0.0049 29.6 7.0 50 132-181 123-172 (401)
258 PF01920 Prefoldin_2: Prefoldi 25.6 2.2E+02 0.0048 23.2 6.0 40 128-167 61-100 (106)
259 PF09755 DUF2046: Uncharacteri 25.6 5E+02 0.011 26.8 9.4 45 122-166 20-64 (310)
260 PRK14139 heat shock protein Gr 25.4 4E+02 0.0088 25.2 8.3 43 127-169 30-72 (185)
261 PF09742 Dymeclin: Dyggve-Melc 25.4 49 0.0011 37.1 2.5 19 343-361 27-48 (678)
262 COG3167 PilO Tfp pilus assembl 25.4 2.5E+02 0.0053 27.2 6.7 44 127-170 47-93 (211)
263 smart00340 HALZ homeobox assoc 25.4 1.4E+02 0.0031 21.9 4.0 29 121-149 4-32 (44)
264 KOG0982 Centrosomal protein Nu 25.2 2.8E+02 0.0061 29.9 7.7 84 100-183 185-294 (502)
265 PF03310 Cauli_DNA-bind: Cauli 25.2 1.4E+02 0.003 26.7 4.7 51 123-173 7-61 (121)
266 PF07544 Med9: RNA polymerase 25.2 3.8E+02 0.0082 21.8 7.6 52 125-180 24-78 (83)
267 PF12308 Noelin-1: Neurogenesi 25.1 2.3E+02 0.0051 24.4 5.9 53 125-177 43-95 (101)
268 PRK06342 transcription elongat 25.1 1.6E+02 0.0034 27.2 5.4 20 117-136 29-48 (160)
269 PRK00888 ftsB cell division pr 25.0 1.8E+02 0.0039 24.9 5.4 24 141-164 32-55 (105)
270 PF09744 Jnk-SapK_ap_N: JNK_SA 25.0 4.3E+02 0.0092 24.4 8.1 39 126-164 47-85 (158)
271 TIGR00293 prefoldin, archaeal 24.8 2E+02 0.0044 24.6 5.8 42 126-167 83-124 (126)
272 PF07798 DUF1640: Protein of u 24.7 2.4E+02 0.0051 26.1 6.5 14 66-79 6-19 (177)
273 PF10267 Tmemb_cc2: Predicted 24.7 2.2E+02 0.0048 30.2 7.0 51 128-178 275-327 (395)
274 KOG2196 Nuclear porin [Nuclear 24.6 1.8E+02 0.0039 28.9 5.8 43 126-168 117-159 (254)
275 COG1730 GIM5 Predicted prefold 24.6 2.1E+02 0.0046 26.1 6.0 44 124-167 96-139 (145)
276 PF05384 DegS: Sensor protein 24.4 3.5E+02 0.0075 25.1 7.4 81 122-205 27-107 (159)
277 COG5613 Uncharacterized conser 24.4 3.6E+02 0.0077 28.4 8.1 54 124-184 332-385 (400)
278 KOG2264 Exostosin EXT1L [Signa 24.3 1.5E+02 0.0034 33.0 5.8 13 344-356 375-387 (907)
279 PF05064 Nsp1_C: Nsp1-like C-t 24.1 31 0.00066 30.0 0.5 38 136-180 57-94 (116)
280 PF15556 Zwint: ZW10 interacto 24.0 5.1E+02 0.011 25.3 8.6 61 125-185 101-162 (252)
281 KOG3805 ERG and related ETS tr 24.0 78 0.0017 32.5 3.3 60 16-75 275-337 (361)
282 PF13870 DUF4201: Domain of un 23.9 3.9E+02 0.0085 24.4 7.8 7 143-149 63-69 (177)
283 COG3166 PilN Tfp pilus assembl 23.7 2.1E+02 0.0045 27.6 6.1 13 175-187 103-115 (206)
284 TIGR01843 type_I_hlyD type I s 23.5 3.9E+02 0.0085 27.0 8.5 31 135-165 143-173 (423)
285 PF08537 NBP1: Fungal Nap bind 23.4 1.9E+02 0.0041 29.9 6.0 15 84-98 85-99 (323)
286 PRK14144 heat shock protein Gr 23.4 4.3E+02 0.0093 25.4 8.1 37 123-159 46-82 (199)
287 PF07195 FliD_C: Flagellar hoo 23.3 2.4E+02 0.0053 27.1 6.6 19 33-53 125-144 (239)
288 PRK10093 primosomal replicatio 23.2 3.3E+02 0.0072 25.6 7.1 56 123-179 110-165 (171)
289 PRK04778 septation ring format 23.2 3E+02 0.0066 30.1 8.0 58 128-185 354-411 (569)
290 PF01166 TSC22: TSC-22/dip/bun 23.1 95 0.0021 24.3 2.9 23 129-151 14-36 (59)
291 PRK10698 phage shock protein P 23.1 3.9E+02 0.0084 25.8 7.9 42 139-180 102-143 (222)
292 PTZ00454 26S protease regulato 22.9 2.4E+02 0.0052 29.6 6.9 41 124-164 17-57 (398)
293 PRK08724 fliD flagellar cappin 22.9 3.4E+02 0.0073 30.8 8.3 32 138-169 619-650 (673)
294 PRK14147 heat shock protein Gr 22.9 4E+02 0.0086 24.9 7.6 38 130-167 19-56 (172)
295 PF15188 CCDC-167: Coiled-coil 22.8 4.5E+02 0.0098 22.0 7.1 47 123-169 6-55 (85)
296 PRK14144 heat shock protein Gr 22.7 5.4E+02 0.012 24.7 8.6 41 128-168 44-84 (199)
297 PHA02047 phage lambda Rz1-like 22.7 3.3E+02 0.0071 23.5 6.3 26 140-165 38-63 (101)
298 PF04129 Vps52: Vps52 / Sac2 f 22.7 4.5E+02 0.0097 28.5 9.1 63 134-196 33-95 (508)
299 PRK14153 heat shock protein Gr 22.6 3.8E+02 0.0082 25.6 7.5 44 124-167 35-78 (194)
300 PRK09973 putative outer membra 22.6 3.4E+02 0.0074 22.7 6.3 47 123-169 25-71 (85)
301 PRK14151 heat shock protein Gr 22.4 4.4E+02 0.0095 24.7 7.8 35 126-160 24-58 (176)
302 KOG3758 Uncharacterized conser 22.3 3.4E+02 0.0074 30.5 8.0 59 125-183 81-139 (655)
303 KOG2077 JNK/SAPK-associated pr 22.3 2E+02 0.0043 32.1 6.2 44 126-169 326-369 (832)
304 PF07334 IFP_35_N: Interferon- 22.3 1.4E+02 0.003 24.6 3.9 9 137-145 8-16 (76)
305 PF11544 Spc42p: Spindle pole 22.3 4.4E+02 0.0095 21.7 6.7 29 128-156 18-46 (76)
306 KOG2185 Predicted RNA-processi 22.2 2.7E+02 0.006 29.8 6.9 28 123-150 414-441 (486)
307 PRK14148 heat shock protein Gr 22.1 5.2E+02 0.011 24.7 8.3 46 122-167 40-85 (195)
308 PF09766 FimP: Fms-interacting 21.9 2.4E+02 0.0053 29.1 6.6 32 140-171 105-136 (355)
309 PF04888 SseC: Secretion syste 21.9 4.2E+02 0.0091 26.3 8.2 58 131-188 239-296 (306)
310 PF14817 HAUS5: HAUS augmin-li 21.6 5.7E+02 0.012 28.8 9.7 42 124-165 88-129 (632)
311 cd07619 BAR_Rich2 The Bin/Amph 21.6 3.6E+02 0.0078 26.8 7.4 43 153-195 165-208 (248)
312 PRK06664 fliD flagellar hook-a 21.5 2.6E+02 0.0056 31.6 7.1 42 137-178 601-642 (661)
313 PRK14127 cell division protein 21.5 1.8E+02 0.004 25.3 4.7 37 127-163 35-71 (109)
314 KOG3119 Basic region leucine z 21.5 6.1E+02 0.013 25.2 9.1 49 128-176 193-241 (269)
315 KOG4603 TBP-1 interacting prot 21.5 3.3E+02 0.0071 25.9 6.6 40 128-167 78-117 (201)
316 TIGR03495 phage_LysB phage lys 21.5 5.7E+02 0.012 23.1 8.0 53 130-182 20-72 (135)
317 PRK14141 heat shock protein Gr 21.2 4.6E+02 0.01 25.4 7.9 36 126-161 35-70 (209)
318 PF10481 CENP-F_N: Cenp-F N-te 21.1 5.1E+02 0.011 26.4 8.2 52 127-178 72-123 (307)
319 PF07303 Occludin_ELL: Occludi 21.1 3E+02 0.0065 23.5 5.9 69 121-190 7-76 (101)
320 PF15294 Leu_zip: Leucine zipp 21.1 3.1E+02 0.0067 27.8 6.9 42 127-168 130-171 (278)
321 PRK13922 rod shape-determining 21.0 1.6E+02 0.0035 28.8 5.0 22 145-166 71-92 (276)
322 PF09738 DUF2051: Double stran 21.0 5.6E+02 0.012 26.1 8.8 26 137-162 106-131 (302)
323 PRK03947 prefoldin subunit alp 21.0 2.4E+02 0.0053 24.7 5.6 43 124-166 96-138 (140)
324 PF05149 Flagellar_rod: Parafl 21.0 6.1E+02 0.013 25.8 9.0 40 138-177 47-86 (289)
325 PF07889 DUF1664: Protein of u 20.8 5.2E+02 0.011 23.1 7.6 54 126-182 40-93 (126)
326 PF14723 SSFA2_C: Sperm-specif 20.8 1.6E+02 0.0034 27.9 4.4 22 130-151 146-167 (179)
327 KOG2010 Double stranded RNA bi 20.8 2.9E+02 0.0063 28.8 6.6 53 130-182 148-200 (405)
328 PF07445 priB_priC: Primosomal 20.6 4.9E+02 0.011 24.1 7.8 31 151-181 139-169 (173)
329 KOG3119 Basic region leucine z 20.6 4.4E+02 0.0095 26.2 7.9 37 146-182 218-254 (269)
330 COG3923 PriC Primosomal replic 20.5 6.8E+02 0.015 23.6 8.4 57 125-182 116-172 (175)
331 PLN03223 Polycystin cation cha 20.5 2E+02 0.0044 35.2 6.2 54 131-184 1573-1626(1634)
332 PF01025 GrpE: GrpE; InterPro 20.3 1.4E+02 0.003 26.8 4.0 31 129-159 18-48 (165)
333 PF07889 DUF1664: Protein of u 20.2 6.3E+02 0.014 22.6 8.9 22 145-166 77-98 (126)
334 PF09730 BicD: Microtubule-ass 20.2 3.8E+02 0.0082 30.7 8.0 42 137-178 56-97 (717)
335 KOG2856 Adaptor protein PACSIN 20.1 4.3E+02 0.0093 28.1 7.7 70 117-186 172-242 (472)
336 PF00038 Filament: Intermediat 20.1 6E+02 0.013 25.0 8.8 29 142-170 222-250 (312)
337 PRK14158 heat shock protein Gr 20.1 7E+02 0.015 23.8 8.8 45 123-167 41-85 (194)
338 PRK14151 heat shock protein Gr 20.0 5.7E+02 0.012 23.9 8.1 40 129-168 20-59 (176)
339 PF04201 TPD52: Tumour protein 20.0 5.6E+02 0.012 23.9 7.8 41 118-158 25-65 (162)
No 1
>KOG0627 consensus Heat shock transcription factor [Transcription]
Probab=100.00 E-value=3.1e-44 Score=355.05 Aligned_cols=192 Identities=44% Similarity=0.780 Sum_probs=172.3
Q ss_pred CCCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC--CCC
Q 015162 6 GQGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID--PDQ 83 (412)
Q Consensus 6 ~~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~--~~~ 83 (412)
|+.....+++|+.|||.||+||++++||+|+++|.+|||||+.+|++.+||+||||+||+|||||||+||||||+ +++
T Consensus 5 ~~~~~~~~~~Fl~K~y~~v~Dps~~~iisWs~~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~ 84 (304)
T KOG0627|consen 5 GLSEASGPPPFLEKLYEMVEDPSTDEIISWSPSGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDR 84 (304)
T ss_pred CccccCCCCcHHHHHHHHhcCCCCCCceEECCCCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCc
Confidence 345566899999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cccccccccccccccccccccccCCCCCCC---CC---CCCC-----ChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhcc
Q 015162 84 WEFANEEFIRGQRHLLKNIHRRKPVHSHST---QS---PTPI-----TETERNEFEAKIERLKKENSLLQLELRRRESGN 152 (412)
Q Consensus 84 ~eF~h~~F~Rg~~~lL~~I~Rr~~~~s~~~---~~---~~~~-----t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqq 152 (412)
|||+|++|+||+++||++|+|||+.+.... .. ...+ ....+..+..++.+|+++++.|+.++.+|++++
T Consensus 85 wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~ 164 (304)
T KOG0627|consen 85 WEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQ 164 (304)
T ss_pred eeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999998776543 11 0001 112244578899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhh
Q 015162 153 HEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQA 197 (412)
Q Consensus 153 q~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q~~ 197 (412)
..+..+++.+.+++...+.+|+.|+.|++++++.|+|+.++.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 209 (304)
T KOG0627|consen 165 DALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQRQ 209 (304)
T ss_pred HHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccchh
Confidence 999999999999999999999999999999999999998876544
No 2
>smart00415 HSF heat shock factor.
Probab=100.00 E-value=2e-34 Score=245.00 Aligned_cols=94 Identities=67% Similarity=1.282 Sum_probs=90.8
Q ss_pred CCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccCC----------
Q 015162 12 SPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDP---------- 81 (412)
Q Consensus 12 ~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~---------- 81 (412)
.+|.|+.|||+||+|+++++||+|+++|++|||.|+..|.+.|||+||||+||+||+||||+|||+|+..
T Consensus 1 ~~~~F~~kL~~~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~ 80 (105)
T smart00415 1 QPPPFLTKLYLLVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFT 80 (105)
T ss_pred CCCcHHHHHHHHHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred -CCcccccccccccccccccccccc
Q 015162 82 -DQWEFANEEFIRGQRHLLKNIHRR 105 (412)
Q Consensus 82 -~~~eF~h~~F~Rg~~~lL~~I~Rr 105 (412)
+.|+|+|++|+||+++||.+|+||
T Consensus 81 ~~~~~F~h~~F~Rg~~~lL~~I~Rk 105 (105)
T smart00415 81 SDQWEFANPDFVRGQPELLRNIKRK 105 (105)
T ss_pred CCceEEECcCccCcCHHHHHhCcCC
Confidence 789999999999999999999986
No 3
>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []. Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....
Probab=100.00 E-value=2e-34 Score=243.49 Aligned_cols=93 Identities=55% Similarity=1.042 Sum_probs=81.5
Q ss_pred chHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccCCC---------Ccc
Q 015162 15 PFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKIDPD---------QWE 85 (412)
Q Consensus 15 ~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~~~---------~~e 85 (412)
+||.|||+||+||.+++||+|+++|++|||+|+.+|++.|||+||+|+||+||+||||+|||+|+... .|+
T Consensus 1 ~F~~kL~~~l~~~~~~~~I~W~~~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~ 80 (103)
T PF00447_consen 1 KFLSKLYEMLEDPENSDIIRWSPDGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWE 80 (103)
T ss_dssp HHHHHHHHHHCTTTTTTTCEECTTSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEE
T ss_pred ChHHHHHHHHcCCCCCCEEEEeCCCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeE
Confidence 59999999999999999999999999999999999999999999999999999999999999999653 389
Q ss_pred cccccccccccccccccccccC
Q 015162 86 FANEEFIRGQRHLLKNIHRRKP 107 (412)
Q Consensus 86 F~h~~F~Rg~~~lL~~I~Rr~~ 107 (412)
|+|++|+||++++|..|+|+++
T Consensus 81 f~h~~F~r~~~~lL~~I~r~~~ 102 (103)
T PF00447_consen 81 FYHPNFRRGQPDLLSKIKRRKS 102 (103)
T ss_dssp EEETT-BTTBCCCTTTS---TT
T ss_pred ECCcCccCCCHHHHhhCccCCC
Confidence 9999999999999999999874
No 4
>COG5169 HSF1 Heat shock transcription factor [Transcription]
Probab=99.98 E-value=1.5e-33 Score=275.82 Aligned_cols=155 Identities=33% Similarity=0.601 Sum_probs=118.8
Q ss_pred CCCCCCCCchHHHHHHhhcCCCCCCceEEcCCCCeEEEeCCchhhhhccccccCCCCchhhhhccccccccccC-C----
Q 015162 7 QGSSNSPAPFLIKTYEMVDDPLTNSLVSWSQSGGSFIVWNPPDFAKDLLPLYFKHNNFSSFVRQLNTYGFRKID-P---- 81 (412)
Q Consensus 7 ~~~~~~~~~Fl~KLy~mv~d~~~~~iI~W~~~G~sFiI~d~~~F~~~vLp~~Fkh~nfsSFvRQLN~YGF~Kv~-~---- 81 (412)
|+....++.|+.|||.||++|++.++|+|+++|++|||+|+++|.+.|||+||||+||+|||||||+||||||. .
T Consensus 4 s~~~~~~~~FV~KLy~iLe~~e~~k~I~Ws~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~ 83 (282)
T COG5169 4 SSRWSQPKEFVHKLYQILEEPEYYKLIQWSPDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQR 83 (282)
T ss_pred CcCCCchhHHHHHHHHHhcCcccCCceEECCCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccc
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999996 2
Q ss_pred -----CCcccccccccccccccccccccccCCCCC-CCCC-CCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHH
Q 015162 82 -----DQWEFANEEFIRGQRHLLKNIHRRKPVHSH-STQS-PTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHE 154 (412)
Q Consensus 82 -----~~~eF~h~~F~Rg~~~lL~~I~Rr~~~~s~-~~~~-~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~ 154 (412)
..|||.|++|++|..++|++|+|+|..... ...+ +.+++.. .+++.+-..+..+..++.+|...++.
T Consensus 84 ~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~~~~~s~~~~~~------~~~~~~i~~~~~~~~~~S~l~~~~~~ 157 (282)
T COG5169 84 SYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVDSNNESKDAMMN------IEVENIILPQSELYNSLSSLSNVNQT 157 (282)
T ss_pred cccchhheeecCchhccCcHHHHHHhhhhhcCcccccccCCCCccccc------hhhhhhhchhcccCcchhHHhhhhHH
Confidence 359999999999999999999996643221 1111 1111110 23444444555555666666666666
Q ss_pred HHHHHHHHHHHHH
Q 015162 155 FEYHVQSVRERLR 167 (412)
Q Consensus 155 l~~qvq~L~erL~ 167 (412)
++..+..+++.+.
T Consensus 158 ~~~~~~~lk~~~~ 170 (282)
T COG5169 158 LLLYLNELKEYNY 170 (282)
T ss_pred Hhhhhccccchhh
Confidence 6666666655443
No 5
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=95.30 E-value=0.0057 Score=50.68 Aligned_cols=58 Identities=22% Similarity=0.441 Sum_probs=45.3
Q ss_pred HHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc--cccCCCCchhhhhcccccc
Q 015162 17 LIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP--LYFKHNNFSSFVRQLNTYG 75 (412)
Q Consensus 17 l~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp--~~Fkh~nfsSFvRQLN~YG 75 (412)
..=|.++|.|++..++|+|.. .+..|.|.||+++++. .. +--...+|.++-|-|..|.
T Consensus 5 w~FLl~LL~d~~~~~~I~Wt~~~~~eFki~d~~~vA~l-WG~~k~~~~m~yeklsR~LR~yy 65 (85)
T PF00178_consen 5 WQFLLELLEDPSNSDIIAWTGKRGGEFKIVDPEAVARL-WGKHKNRPNMNYEKLSRALRYYY 65 (85)
T ss_dssp HHHHHHHHHSGGGTTTEEEEETSTTEEEESSHHHHHHH-HHHHTTSTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCCeeEeeccCCCeEEecCHHHHHHH-HHHHcCCccccHHHHHHHHHHHh
Confidence 345788999999999999998 9999999999999864 22 1223457889999887763
No 6
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=93.25 E-value=0.075 Score=44.37 Aligned_cols=57 Identities=21% Similarity=0.425 Sum_probs=42.7
Q ss_pred HHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhccc-cccCCCCchhhhhccccc
Q 015162 18 IKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLP-LYFKHNNFSSFVRQLNTY 74 (412)
Q Consensus 18 ~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp-~~Fkh~nfsSFvRQLN~Y 74 (412)
.=|.++|.||++.++|+|.+ ++.-|.+.|+++.++.=-- +-=..-||..+-|-|..|
T Consensus 6 ~FL~~LL~d~~~~~~I~W~~k~~g~Fkl~~~~~vA~lWG~~Knk~~M~YeklSRaLRyy 64 (87)
T smart00413 6 QFLLDLLLDPENGDIIRWTDRDGGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYY 64 (87)
T ss_pred HHHHHHHcCccCCCeEEeeCCCCCEEEecCHHHHHHHHhhhcCCCCCCHHHHHHHHHHH
Confidence 34678999999999999998 6889999999988774111 112345777788877766
No 7
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.77 E-value=0.51 Score=37.92 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+.-+|+.||..++.|..|.+.+++....+..+-..|++.... +|..+-+.|.+
T Consensus 23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk 75 (79)
T COG3074 23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence 567899999999999999999999999999998888887554 44455444443
No 8
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=89.89 E-value=0.33 Score=45.42 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=43.7
Q ss_pred chHHHHHHhhcCCCCCCceEEcC-CCCeEEEeCCchhhhhcccc-ccCCCCchhhhhccccc
Q 015162 15 PFLIKTYEMVDDPLTNSLVSWSQ-SGGSFIVWNPPDFAKDLLPL-YFKHNNFSSFVRQLNTY 74 (412)
Q Consensus 15 ~Fl~KLy~mv~d~~~~~iI~W~~-~G~sFiI~d~~~F~~~vLp~-~Fkh~nfsSFvRQLN~Y 74 (412)
....-|.++|.|+++.++|+|.. +|--|.+.||++.++.---+ -=..-||.-.-|-|..|
T Consensus 70 qLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVArlWG~rK~kp~MNYdKLSRaLRyy 131 (177)
T KOG3806|consen 70 QLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVARLWGARKNKPNMNYDKLSRALRYY 131 (177)
T ss_pred hHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHHHHhhhhCCCCCCHHHHHHHHHHH
Confidence 44556678899999999999998 78899999999999852221 11244666666666555
No 9
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=89.79 E-value=1.8 Score=35.51 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC 179 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf 179 (412)
+.-||+.||.++..|..+.+.++.....+..+.+.|++....-+.|-+.|+..
T Consensus 23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888888888777777777777777777655544444444443
No 10
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=89.04 E-value=2.4 Score=41.21 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=47.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
+...+..++..|+++.+.|.....+++......+.++..|++++...+...+.|.-+|.+++.
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777777777777777888888888888888888887777665
No 11
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=88.27 E-value=5.4 Score=32.15 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACL 180 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL 180 (412)
.|..|+.++..|..+-..|.+++..+..+.+.|++.......+...++..|
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444555555555544444444444444433
No 12
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=86.99 E-value=4.4 Score=35.77 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=40.8
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRESGNHEF---EYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l---~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
+.|...+..++.+|...+..+..||.+|-.++..+ ..++..|+..+..++.+-+.++..|.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG 92 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG 92 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777777777777777777777766444 35666667777777777666665543
No 13
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=86.85 E-value=2.5 Score=40.44 Aligned_cols=77 Identities=19% Similarity=0.277 Sum_probs=33.6
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 87 ANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 87 ~h~~F~Rg~~~lL~~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
.||.|-..+++||..|+=.-+ .. .-..-...++.+||++++.++.++..|.+.-
T Consensus 17 ~~PdFf~~~~~ll~~l~~ph~-----~~---------------------~avSL~erQ~~~LR~~~~~L~~~l~~Li~~A 70 (225)
T PF04340_consen 17 QHPDFFERHPELLAELRLPHP-----SG---------------------GAVSLVERQLERLRERNRQLEEQLEELIENA 70 (225)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHhCHHHHHHcCCCCC-----CC---------------------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999874221 00 1122334455666666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhcCCch
Q 015162 167 RYLENRQTQMIACLANLLKKPGF 189 (412)
Q Consensus 167 ~~~e~~Qq~mlsfL~~vlq~p~f 189 (412)
+..+..++++..+..+++.-..+
T Consensus 71 r~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 71 RENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCH
Confidence 77777777777777777766543
No 14
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.56 E-value=2.1 Score=31.51 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++.+.+.||+....|..+..+|.++++.|..++..|..+++
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677888888888888888888888888888888887764
No 15
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.40 E-value=5.1 Score=36.34 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
...+..+|..|......|..+|..++.+...+.++++.+.+|+...+..+..+.+.|..+
T Consensus 54 ie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 54 IETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445777888888888889999999999999999999999999998888887777666553
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.04 E-value=9.1 Score=30.84 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
..++..|..+=..+..|..|+.+|++++..+..+...|++......+.+...-..|..++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888888888888888888888888877777666665555555433
No 17
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.09 E-value=3.6 Score=46.33 Aligned_cols=62 Identities=15% Similarity=0.268 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p 187 (412)
.++..+..|+...+.-..+|..++++...+......|.+|+.....+|+.++..+.++++..
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777888888888889999999999999999999999999999999999888877643
No 18
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.00 E-value=7.9 Score=30.34 Aligned_cols=46 Identities=17% Similarity=0.411 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
++.+.+++...|..+..+...|+....++..|..+|..|++++..+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888888888888888888888877543
No 19
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.83 E-value=5.5 Score=34.43 Aligned_cols=47 Identities=26% Similarity=0.359 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
..++..|..|-.+...|..++..|-++|..|..+.+.|++||...++
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888888888888888899999999999999999999987655
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.53 E-value=7.3 Score=36.13 Aligned_cols=52 Identities=25% Similarity=0.354 Sum_probs=38.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
...++.++..|..++..|++++..|+.++..|.+++..++.-=+.|+..+.+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677778888888888888888888888888877777666666665554
No 21
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.38 E-value=16 Score=28.93 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
.+.+++.+++.+...+...+..+++.....+.++..+.++|..++..++=+..++.-
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiG 59 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888999999999999999999999999999888877666655544
No 22
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.80 E-value=12 Score=37.96 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=46.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
.+...+..+++.|+++...|..||..|+++...+..++..+++.+...++...+...
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~ 99 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWR 99 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445668889999999999999999999999999999999999887777655544443
No 23
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=77.92 E-value=20 Score=29.52 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
+..|..++..|+.....|..++..+++....++..-+-+-.+|..++
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556566666666666666666655555555444444444433
No 24
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=77.49 E-value=8.2 Score=33.65 Aligned_cols=45 Identities=27% Similarity=0.334 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
..++..|..|-.+...|..++..+-++|..|..+.+.|++||...
T Consensus 11 ~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 11 DDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888999999999999999999999865
No 25
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=76.18 E-value=21 Score=28.80 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
...+..|.+.|-+....+..-+.+|+.+...++.++..+..++...+..-..+-.++.
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556777788888888888888888888888888888888888877766655555443
No 26
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.80 E-value=29 Score=28.59 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQS-------VRERLRYLENRQTQMIACL 180 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~-------L~erL~~~e~~Qq~mlsfL 180 (412)
..++.+|...=..+..|..|+..|++++..+..+++. |.+..+.+.+.|+.--..|
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777888999999999999999998877 5555555554443333333
No 27
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=73.56 E-value=6.3 Score=34.92 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhh
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQ 195 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q 195 (412)
+...||..+.+.+..+...+.+|.+++...++.+.+|.++-++|+++ +...+.
T Consensus 3 ~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkId 55 (121)
T PF03310_consen 3 TIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKID 55 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHH
Confidence 34566677777777777888888888888888888999999998886 444443
No 28
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.45 E-value=35 Score=28.63 Aligned_cols=63 Identities=25% Similarity=0.439 Sum_probs=50.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRES---GNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~q---qqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
.++..+..+++.|+.+.+.+..++..+.. ..+.+..++..+++.+..++.....+-.-|..++
T Consensus 36 ~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 36 QERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999999888876 4678888888888888888887777776666543
No 29
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.10 E-value=19 Score=35.97 Aligned_cols=61 Identities=13% Similarity=0.296 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFS 190 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~ 190 (412)
.|..+|+.+......+..++.+++++...++.+|..+++++. .++.++.-=+|.++..|-.
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~----~r~~~l~~raRAmq~nG~~ 116 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV----ERQELLKKRARAMQVNGTA 116 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCh
Confidence 344444444444444444455555555555555555555544 3345555555555555433
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=71.49 E-value=23 Score=34.94 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
+..|..+|..|+++...|..++..+.-.|..+.++|+.+..-|.+.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777888888888888888888887766663
No 31
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=70.85 E-value=2.4 Score=39.47 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
|+.|| .+++.|..++|||+.+...|.+++ .+++++..
T Consensus 19 LE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~~ 55 (166)
T PF04880_consen 19 LESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKLRK 55 (166)
T ss_dssp HHHHH----HHHHHHHHCH-----------------------
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Confidence 45555 456777777777777777777777 66666553
No 32
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.47 E-value=23 Score=38.88 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=48.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGF 189 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f 189 (412)
-+..|++.+..-.++|+.++++...+...-..|.+|+.....+|..++..+.++++.++-
T Consensus 589 H~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 589 HVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 345566666777778888888888888888888999999999999999999998887653
No 33
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.32 E-value=30 Score=28.04 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
.++.+|..--.....|+.|+..|++++..+.++++.+.+.....++.-+++
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655566777888898999888888888887766655555544444
No 34
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=69.80 E-value=37 Score=31.81 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
..+|..|+.+...+..-+..++.+...++.++..+++++..++...+.++.-+.+
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455566666777777777778888887777777765443
No 35
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=69.65 E-value=32 Score=33.42 Aligned_cols=59 Identities=24% Similarity=0.288 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
.+.++-..|..+...|..|+..|+..+..++.++...++++...++++..+-..-..+.
T Consensus 46 ~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 46 QWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566666666666666666666666666665555555444433
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=69.65 E-value=24 Score=33.93 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=17.7
Q ss_pred ccccccC--CCCccccccccccccccccccc
Q 015162 74 YGFRKID--PDQWEFANEEFIRGQRHLLKNI 102 (412)
Q Consensus 74 YGF~Kv~--~~~~eF~h~~F~Rg~~~lL~~I 102 (412)
.||-+|. .+.--|.|..|....|.+-..+
T Consensus 65 ~~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rl 95 (206)
T PRK10884 65 TNYAQIRDSKGRTAWIPLKQLSTTPSLRTRV 95 (206)
T ss_pred CCEEEEEeCCCCEEeEEHHHhcCCccHHHHH
Confidence 3677774 3455677777777666654444
No 37
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=67.42 E-value=62 Score=25.75 Aligned_cols=47 Identities=26% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
....++|+.+|..|..++..++.+. ..|.++......+...|++-|-
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER-------~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREER-------AQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 3344455555555555544444433 3344444444444445555443
No 38
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.37 E-value=39 Score=30.19 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQT 174 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq 174 (412)
..+...+.++..++..|...+.+|+.+...++.++..+..+...++...+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666665555554444333
No 39
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.30 E-value=10 Score=32.47 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=24.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
.+..++++...+..++.+++++++.|..++..|+.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45556666777777777777777777777766665
No 40
>PRK10963 hypothetical protein; Provisional
Probab=67.19 E-value=17 Score=34.88 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=41.6
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 87 ANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 87 ~h~~F~Rg~~~lL~~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
.||.|--.+++||..|+=.-+ .. +.. .....++.+||+++..++.++..|-+.-
T Consensus 14 ~~PdFf~~h~~Ll~~L~lph~---~~----gaV-------------------SL~ErQ~~~LR~r~~~Le~~l~~Li~~A 67 (223)
T PRK10963 14 QNPDFFIRNARLVEQMRVPHP---VR----GTV-------------------SLVEWQMARQRNHIHVLEEEMTLLMEQA 67 (223)
T ss_pred HCchHHhhCHHHHHhccCCCC---CC----Cee-------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998864321 00 111 1111233444444444445555555555
Q ss_pred HHHHHHHHHHHHHHHHHhcCCch
Q 015162 167 RYLENRQTQMIACLANLLKKPGF 189 (412)
Q Consensus 167 ~~~e~~Qq~mlsfL~~vlq~p~f 189 (412)
+..+...+++.....+++.-..|
T Consensus 68 ~~Ne~l~~~~~~l~l~Ll~a~~~ 90 (223)
T PRK10963 68 IANEDLFYRLLPLQSRLAAADSL 90 (223)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCH
Confidence 55555555555555555554443
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=66.97 E-value=19 Score=35.40 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=45.5
Q ss_pred CCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 118 ~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
..+..+...|..++..+++....|..+|..+....+.+..++..+++++..++..-
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677888899999999999999999999888889888888888887776533
No 42
>PRK09039 hypothetical protein; Validated
Probab=66.76 E-value=37 Score=34.95 Aligned_cols=10 Identities=10% Similarity=-0.164 Sum_probs=4.1
Q ss_pred CCchHHHHHH
Q 015162 13 PAPFLIKTYE 22 (412)
Q Consensus 13 ~~~Fl~KLy~ 22 (412)
-|.|+-.|-.
T Consensus 16 wpg~vd~~~~ 25 (343)
T PRK09039 16 WPGFVDALST 25 (343)
T ss_pred CchHHHHHHH
Confidence 3444444333
No 43
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.71 E-value=21 Score=28.33 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
..+..+-..|+.....+..|=..|.+++.....+|..|-.||..||+
T Consensus 17 ~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 17 ERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 34566666677777777777777777777777777777777777664
No 44
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=65.12 E-value=40 Score=36.33 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
..+..+++.|.++|..|..|-.+|++....+..+++.-
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45667778888888888888888887777766665543
No 45
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=64.31 E-value=31 Score=34.12 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..|+.+|..|-.+++.|..|-.+|+.++..|-.+-+.|..+|.
T Consensus 93 ~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3467777778888888888877777776666655555555443
No 46
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.09 E-value=33 Score=31.28 Aligned_cols=35 Identities=26% Similarity=0.346 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHH
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRESGNHEF 155 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l 155 (412)
+.+...|+.+|..|+.+...|..++..|+.+...+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444444444443333
No 47
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.40 E-value=41 Score=31.69 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYH 158 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~q 158 (412)
.+..+|..|+.++..|..++..++.+...+...
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~ 156 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKR 156 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444443
No 48
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=62.35 E-value=42 Score=35.67 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=44.4
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE---NRQTQMIACLANLLK 185 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e---~~Qq~mlsfL~~vlq 185 (412)
++..++.+|..++.++..+..+|.+.......+..++..+..+|...+ ..|+..+..+..+++
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888877777777777777777665544 455566655555544
No 49
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=62.29 E-value=42 Score=30.59 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=36.9
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRESGN--HEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqq--q~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
+.+...+.+++..|+.+...|..||..|...- ..+..++..|++.+..++.+...+-
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888877653 4455556666655555555444433
No 50
>PRK11637 AmiB activator; Provisional
Probab=61.99 E-value=42 Score=35.21 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+..+|..+......+..+|..++++...++.++..++++|...+..-.+++..+.+
T Consensus 80 l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 80 QEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555555555555555444444544444
No 51
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=60.97 E-value=44 Score=31.69 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
++..|+.|......+...|....++.-.+...+..|++||...+.+-.+|+..|..
T Consensus 84 lE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~ 139 (189)
T TIGR02132 84 LEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEG 139 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778888766667777777666778888999999999999999999999988873
No 52
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=59.84 E-value=74 Score=28.37 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
...+++|+.....+..++..++.+...+..++..+...+.....
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ke 115 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKE 115 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 53
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.07 E-value=44 Score=32.10 Aligned_cols=21 Identities=5% Similarity=0.181 Sum_probs=9.8
Q ss_pred HhhccHHHHHHHHHHHHHHHH
Q 015162 148 RESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 148 L~qqqq~l~~qvq~L~erL~~ 168 (412)
|+++++.+..+++.++.++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 54
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=58.94 E-value=54 Score=34.63 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=48.2
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESG----NHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qq----qq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
.++..+..+++.|+.+++.+..++..+... .+.+..++..+++++..++.....+-.-+..++
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKL 103 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678889999999999999999775433 346777888888888888888777776665544
No 55
>PRK11637 AmiB activator; Provisional
Probab=58.21 E-value=57 Score=34.21 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
+..+|+.+.++...+..+|..++++...++.++..++++|...+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555555444
No 56
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=57.75 E-value=34 Score=38.64 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHhH
Q 015162 125 NEFEAKIERLKKENS 139 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~ 139 (412)
..|+.+|++||.|..
T Consensus 421 ~rLE~dvkkLraeLq 435 (697)
T PF09726_consen 421 SRLEADVKKLRAELQ 435 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666665543
No 57
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.64 E-value=52 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=15.8
Q ss_pred HHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q 015162 133 RLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENR 172 (412)
Q Consensus 133 ~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~ 172 (412)
.+|.+...+..+|...+++...++.++..+.+++.....+
T Consensus 213 ~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 213 ALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444433333
No 58
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=57.56 E-value=43 Score=34.67 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
|++=|..++.++..|+.+|+.+.++..+.+.+.+.|.+.|.
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 34444444445555555555554444444444444444333
No 59
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.24 E-value=48 Score=30.62 Aligned_cols=18 Identities=17% Similarity=0.349 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015162 165 RLRYLENRQTQMIACLAN 182 (412)
Q Consensus 165 rL~~~e~~Qq~mlsfL~~ 182 (412)
.+..++.++.+||-.+..
T Consensus 132 e~~~l~er~~e~l~~~~e 149 (158)
T PF09744_consen 132 EYNRLHERERELLRKLKE 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555544433
No 60
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=56.93 E-value=50 Score=27.24 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++..+..+|..|+.....|..++...+.++..|..+-+.|.+-+.
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~ 61 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIG 61 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788899999999999999999888888888888777766444
No 61
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.74 E-value=80 Score=29.03 Aligned_cols=60 Identities=20% Similarity=0.324 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
..+..++..+.+....+..++..++...+......+..++++...+...+.+..-+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888888888888888877777777776666644
No 62
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=56.65 E-value=78 Score=28.55 Aligned_cols=40 Identities=28% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..++..|......+..+|..|...++.++.+|..+.++|.
T Consensus 20 e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~ 59 (143)
T PF12718_consen 20 EAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLK 59 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444443
No 63
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=56.49 E-value=77 Score=31.37 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
.....++..++.....|..+|..|+.++..|+.++..++.++...-.
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~ 258 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888888888877654433
No 64
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=56.45 E-value=59 Score=34.42 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=48.9
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESG---NHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qq---qq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
.++..+..+++.|+++++.+..++..+... .+.+..++..|++++..++.....+-.-+...+.
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999874433 3357778888888888888888777776666443
No 65
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=56.39 E-value=93 Score=28.28 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
..+|..|+.+...|..++.+|..+..++..+-..|.+.++.+..+.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555554444443333
No 66
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=56.37 E-value=61 Score=28.80 Aligned_cols=55 Identities=24% Similarity=0.272 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
+..+..+...|...+-.+..+|..++.+......+++.|+.+....+++++.+..
T Consensus 36 ~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 36 REELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455566666666666667777777777777777777777777777776666643
No 67
>PLN02678 seryl-tRNA synthetase
Probab=56.20 E-value=64 Score=34.60 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=47.7
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRES---GNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~q---qqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
.++..+..+++.|+.+++.+..++..++. +...+..+++.|++++..++...+.+-+-|..++.
T Consensus 40 ~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 40 KEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667888999999999999998875432 33456667888888888888887777777666544
No 68
>PRK00295 hypothetical protein; Provisional
Probab=55.89 E-value=52 Score=26.07 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++..+.-...-...|-..|.+.+++...++.+++.|.+||.
T Consensus 10 LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~ 50 (68)
T PRK00295 10 LESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQE 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555544444445555555555444
No 69
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=55.23 E-value=97 Score=24.00 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
|..+|..|..+...|..++..++.+-+..+.+-..-.+||.
T Consensus 8 Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 8 LSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443444444444444443
No 70
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.81 E-value=77 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015162 160 QSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 160 q~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+.+++.+..+++.-+.+|....-
T Consensus 24 ~~i~~~ve~i~envk~ll~lYE~ 46 (55)
T PF05377_consen 24 EEISESVEKIEENVKDLLSLYEV 46 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444566654433
No 71
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.36 E-value=36 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=11.5
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+...+..++.+++.+...+..+++.+
T Consensus 12 ~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 12 IESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 72
>PF14282 FlxA: FlxA-like protein
Probab=53.81 E-value=1e+02 Score=26.38 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc-c---HHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESG-N---HEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qq-q---q~l~~qvq~L~erL~~~e~ 171 (412)
...|+.|++.+..|..+|..|... - ..-..+++.|...|..++.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~Lqa 65 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQA 65 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888772 1 2333444444444444433
No 73
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.78 E-value=39 Score=26.71 Aligned_cols=42 Identities=19% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
|+..+.-+....+.|...+.+..++...++.+++.|.+||..
T Consensus 9 LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 9 LEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555444444444555555554443
No 74
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.90 E-value=27 Score=33.89 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.1
Q ss_pred ccccccccccccccccccccccc
Q 015162 84 WEFANEEFIRGQRHLLKNIHRRK 106 (412)
Q Consensus 84 ~eF~h~~F~Rg~~~lL~~I~Rr~ 106 (412)
|-+.||.|-+-+++|+..|.=+.
T Consensus 12 yL~~hPeFf~~h~~Ll~~L~lph 34 (218)
T COG3159 12 YLRQHPEFFIQHAELLEELRLPH 34 (218)
T ss_pred HHHhCcHHHHhCHHHHHHcCCCC
Confidence 44689999999999999997543
No 75
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=52.80 E-value=1.1e+02 Score=25.23 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhcc-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGN-------HEFEYHVQSVRERLRYLENRQTQMIAC 179 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqq-------q~l~~qvq~L~erL~~~e~~Qq~mlsf 179 (412)
++.+|.+...+..++..++.+. ..--.+|+.+++.+..+|..+.+|-.-
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~ 61 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333332 233345666777777777777777654
No 76
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=52.58 E-value=76 Score=27.14 Aligned_cols=52 Identities=15% Similarity=0.344 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRR--ESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL--~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
..+.+.+....+....+..++..| +++...++..|..|+.++..++.+-+.|
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334344444444444444444444 3444444444444444444444444333
No 77
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=52.50 E-value=43 Score=30.68 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHhHHH-----HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 123 ERNEFEAKIERLKKENSLL-----QLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L-----~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
+...+..|+.+|++|+..+ .++-.+++++...+..+++.+.+.+...+.....++..+..++.
T Consensus 41 ~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (161)
T PF04420_consen 41 EQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLT 108 (161)
T ss_dssp HHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888887654 34456677777778888888888877777777777777776555
No 78
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=52.39 E-value=39 Score=25.90 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=9.4
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRER 165 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~er 165 (412)
|..++..|..++..|..++..|.+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 79
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=52.38 E-value=82 Score=24.40 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=37.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
.+|+.|-.+...|..++..|.++...+...++..++.-.+.-+|...+.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4688888888888888888888888888888888877666666554443
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=52.02 E-value=55 Score=32.29 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
....+..+++++++....+..++..++.+...++.+++.+++|+...+..+
T Consensus 32 ~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 32 ALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777777777777777766665544
No 81
>PRK00736 hypothetical protein; Provisional
Probab=51.30 E-value=70 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++..+.-...-...|...|.+.+++...+..+++.|.+|+.
T Consensus 10 LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 10 LEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555554444555555555555444
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=51.18 E-value=66 Score=34.77 Aligned_cols=52 Identities=6% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
.+...+.....|..+|..++++.+.+..+.+.++++|..++...+.|-.-+.
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666666666666666777777766666666655543
No 83
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=50.37 E-value=65 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQ 175 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ 175 (412)
.+..|..+|+.+...+..++..|+..+...++++..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444433
No 84
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=50.13 E-value=46 Score=29.98 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=21.0
Q ss_pred HHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 134 LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
|..++..|++||.+|++++..+..++..++. +-.++.+|..
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~-------k~e~l~~~~~ 119 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKS-------KYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhh
Confidence 4445555555555555555555444444444 3345555544
No 85
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=50.08 E-value=72 Score=28.49 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
++++.+......+..++..|+.....+..++..++.|+..+.++.-+++
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666666644444444555555555444444333333
No 86
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=49.84 E-value=1.2e+02 Score=28.61 Aligned_cols=38 Identities=11% Similarity=0.261 Sum_probs=19.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 142 QLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC 179 (412)
Q Consensus 142 ~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf 179 (412)
..++.+++++++.+..++..|++++..++.-.+.++..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~I 147 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVI 147 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444443
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=49.64 E-value=1e+02 Score=31.24 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=3.8
Q ss_pred ccccccc
Q 015162 70 QLNTYGF 76 (412)
Q Consensus 70 QLN~YGF 76 (412)
+|.+|.|
T Consensus 69 ~Lely~~ 75 (325)
T PF08317_consen 69 MLELYQF 75 (325)
T ss_pred HHHHHHH
Confidence 4555555
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=49.58 E-value=39 Score=26.28 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=16.1
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
+..++++...|..++..+++++..+..++..|
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555555555555544444444
No 89
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=47.87 E-value=62 Score=28.33 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
..++..|-.+-++...|.+.|..+-.++..|..+...|++||-.
T Consensus 11 ~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 11 DNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34667777777888888888888888888889999999999875
No 90
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.64 E-value=71 Score=25.58 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 015162 156 EYHVQSVR 163 (412)
Q Consensus 156 ~~qvq~L~ 163 (412)
+.++..|.
T Consensus 42 ~~~l~~L~ 49 (72)
T PRK02793 42 RDHLRLLT 49 (72)
T ss_pred HHHHHHHH
Confidence 33333333
No 91
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=47.55 E-value=1.2e+02 Score=25.44 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSL-LQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACL 180 (412)
Q Consensus 129 ~eI~~LK~d~~~-L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL 180 (412)
..|..||+..+. -..++..|+.++..+..++..|+.+|......-+.++..|
T Consensus 34 ~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 34 TKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666654443 4455677777777777777777777776666556666543
No 92
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=47.19 E-value=46 Score=31.03 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+|-+.|+.+...+..|++.|+|-...-+.+...|+++|
T Consensus 29 eE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 29 EEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455666666677777788777777777777777765
No 93
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=47.17 E-value=92 Score=24.55 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
++.|..|.-...-+..-+..|.+.....+.+|..|++
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333343333333333333333333
No 94
>PRK00846 hypothetical protein; Provisional
Probab=46.91 E-value=77 Score=25.98 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 015162 155 FEYHVQSVRER 165 (412)
Q Consensus 155 l~~qvq~L~er 165 (412)
++.++..|.+|
T Consensus 46 L~~ql~~L~~r 56 (77)
T PRK00846 46 NAELIRHLLED 56 (77)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 95
>PRK14160 heat shock protein GrpE; Provisional
Probab=46.90 E-value=1.4e+02 Score=28.88 Aligned_cols=42 Identities=24% Similarity=0.230 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.++.++..|+.....|..++..++.+...+...+...+.|..
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~ 99 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTA 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666777777776666666677777777654
No 96
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=46.51 E-value=1.3e+02 Score=29.65 Aligned_cols=57 Identities=21% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHh
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL--------ENRQTQMIACLANLL 184 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~--------e~~Qq~mlsfL~~vl 184 (412)
.+|++.|++++..+..+|..+++++...+.+...++-.|..+ ++.++..+.+|..-+
T Consensus 42 nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~L 106 (230)
T PF03904_consen 42 NEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDEL 106 (230)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988888888888887776542 344455555544433
No 97
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=45.95 E-value=1.3e+02 Score=28.83 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSV------------------RERLRYLENRQTQMIACLANLLKKPG 188 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L------------------~erL~~~e~~Qq~mlsfL~~vlq~p~ 188 (412)
+..+.+.|...+..|..++..|+.++|.+..+-+.| +..-+..++.|+++.--+..++=+-.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~fekekqq~~~~~t~~LwdeS 115 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQETAYEWTELLWDQS 115 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777666543222 22223334556667666666665444
Q ss_pred h--hhhhhhh
Q 015162 189 F--SSALNQQ 196 (412)
Q Consensus 189 f--~~~L~q~ 196 (412)
| +...|.|
T Consensus 116 i~LAEkIV~Q 125 (228)
T PRK06800 116 FQLAEKIVNQ 125 (228)
T ss_pred HHHHHHHHHH
Confidence 3 2334444
No 98
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=45.76 E-value=69 Score=35.23 Aligned_cols=48 Identities=33% Similarity=0.488 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESG-------NHEFEYHVQSVRERLRYLENR 172 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qq-------qq~l~~qvq~L~erL~~~e~~ 172 (412)
..+++++..||+++..|..+|.+++.+ ...++.+++.|.++|..+.+.
T Consensus 165 ~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~ 219 (546)
T KOG0977|consen 165 KALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRI 219 (546)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 346677777777777777777777653 234566777888888777633
No 99
>PRK06798 fliD flagellar capping protein; Validated
Probab=45.28 E-value=83 Score=33.52 Aligned_cols=51 Identities=10% Similarity=0.229 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
.+++.+|.+|.+++..+..+|.+.+ +.++.|...|+..+..|..++..|.+
T Consensus 382 ~~l~~~i~~l~~~~~~~e~rl~~~e---~~l~~qf~ale~~ms~lnsQ~s~l~~ 432 (440)
T PRK06798 382 KSIDNRVSKLDLKITDIDTQNKQKQ---DNIVDKYQKLESTLAALDSQLKTIKA 432 (440)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666555433 34555666666665555554444433
No 100
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.14 E-value=1.4e+02 Score=30.09 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
...+|+..+.+...+..+|.+.+++...+..++..++.||..++..-
T Consensus 198 ~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 198 KDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666777777777777777777777777777666443
No 101
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=45.10 E-value=1.8e+02 Score=25.72 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
....|...|.++.-+...|..++.++..+...+..++..|..+....+
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~ 64 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELR 64 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888999999999999988888888888887765543
No 102
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=45.08 E-value=1.1e+02 Score=26.08 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHH--HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLL--QLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 128 ~~eI~~LK~d~~~L--~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
+..+..+..+...| ..++.+|+-....+..++..|+.+++.+.+...-|
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 44444444444555566666666666665544333
No 103
>PRK14148 heat shock protein GrpE; Provisional
Probab=45.07 E-value=1.4e+02 Score=28.54 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+..+++.|+.....|..++..++..+..+...+..+++|..
T Consensus 38 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 38 VEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666667777777654
No 104
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=44.66 E-value=80 Score=28.02 Aligned_cols=40 Identities=13% Similarity=0.400 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..-++.|+...+.|..++.+|+.+...++.++..|+..|+
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~ 108 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777666666555555555444
No 105
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=44.57 E-value=29 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015162 153 HEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187 (412)
Q Consensus 153 q~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p 187 (412)
..+.-++..|++.++...+..+.+..|=.+++.+|
T Consensus 14 e~l~vrv~eLEeEV~~LrKINrdLfdFSt~iiTkp 48 (48)
T PF14077_consen 14 EQLRVRVSELEEEVRTLRKINRDLFDFSTRIITKP 48 (48)
T ss_pred chheeeHHHHHHHHHHHHHHhHHHHhhhhhhccCC
Confidence 34555666666777777777788888888877665
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.85 E-value=1.2e+02 Score=30.97 Aligned_cols=7 Identities=43% Similarity=0.752 Sum_probs=3.8
Q ss_pred ccccccc
Q 015162 70 QLNTYGF 76 (412)
Q Consensus 70 QLN~YGF 76 (412)
+|.+|-|
T Consensus 64 ~LElY~~ 70 (312)
T smart00787 64 LLELYQF 70 (312)
T ss_pred HHHHHHH
Confidence 3555555
No 107
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=43.68 E-value=59 Score=23.85 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNH 153 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq 153 (412)
+....+.|+.+...|..|...|+.+..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433333
No 108
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=43.50 E-value=1.2e+02 Score=33.74 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
.+...+++|+.++..|..++.+++.+...|..++..++.++..
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~ 468 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD 468 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888888888888888877653
No 109
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.49 E-value=1.1e+02 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
|+.|......|..+...|+.+...+..++..|.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444443
No 110
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=43.33 E-value=55 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
.|+.|-.+|..+...+...|..|+..+...+.....+
T Consensus 16 ~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l 52 (74)
T PF12329_consen 16 QLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL 52 (74)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 111
>PRK00295 hypothetical protein; Provisional
Probab=42.83 E-value=1.6e+02 Score=23.33 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhh
Q 015162 128 EAKIERLKKENSLLQLELRRRES 150 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~q 150 (412)
++.|..|.-...-...-+..|.+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444333333333333
No 112
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.40 E-value=1.4e+02 Score=24.88 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
.+..++++|......|.+++-....|....+..|..+..-|..+
T Consensus 36 ~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 36 ELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555554443
No 113
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.38 E-value=1.4e+02 Score=27.00 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
+..+....+....|..|+.+.+...+....+++.|++..+..+..-....
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555555554444444333333
No 114
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.36 E-value=35 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=18.3
Q ss_pred CChhhhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 015162 119 ITETERNEFEAKIERLKKENSLLQLELRRRES 150 (412)
Q Consensus 119 ~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~q 150 (412)
+++..|.+++.|+..|+........+|..|++
T Consensus 33 Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 33 LSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred CChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 44455556666666666655555555555554
No 115
>PRK04325 hypothetical protein; Provisional
Probab=42.20 E-value=1.7e+02 Score=23.53 Aligned_cols=40 Identities=8% Similarity=0.107 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
|+..+.-...-.+.|-..|.+.+++...++.+++.|.+||
T Consensus 14 LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433333444444444333
No 116
>PLN02320 seryl-tRNA synthetase
Probab=42.04 E-value=1.1e+02 Score=33.38 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=58.3
Q ss_pred ccccccccccccccc-ccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhh--ccHHHHHHHHHH
Q 015162 86 FANEEFIRGQRHLLK-NIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRES--GNHEFEYHVQSV 162 (412)
Q Consensus 86 F~h~~F~Rg~~~lL~-~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~q--qqq~l~~qvq~L 162 (412)
.-.-.|.|.+++.++ +|++|. .... . ..-...+.++..+..+++.|+.+++.+..++...+. +.+.+..++..|
T Consensus 66 mlD~k~ir~n~~~v~~~l~~R~-~~~~-v-d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~l 142 (502)
T PLN02320 66 AIDFKWIRDNKEAVAINIRNRN-SNAN-L-ELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNL 142 (502)
T ss_pred ccCHHHHHhCHHHHHHHHHhcC-CCcC-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHH
Confidence 344577888887654 455543 1100 0 000001234566778889999998888888865211 345666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 015162 163 RERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 163 ~erL~~~e~~Qq~mlsfL~~vl 184 (412)
++++..+|...+.+-.-|...+
T Consensus 143 k~~i~~le~~~~~~~~~l~~~~ 164 (502)
T PLN02320 143 KEGLVTLEEDLVKLTDELQLEA 164 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877777766555544
No 117
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.98 E-value=84 Score=31.04 Aligned_cols=50 Identities=10% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
..+.+|.+....-..-+..|.++...++.+|..|+-.++.+....++|..
T Consensus 40 ~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 40 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34443333333333333344445555555555555555544444444443
No 118
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=41.84 E-value=1.4e+02 Score=29.53 Aligned_cols=37 Identities=41% Similarity=0.490 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
..+++.+.+++..|..++.+++ .++..+++||...+.
T Consensus 141 kekl~E~~~EkeeL~~eleele-------~e~ee~~erlk~le~ 177 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELE-------AEYEEVQERLKRLEV 177 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 3344444445555555544444 444445555544443
No 119
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.72 E-value=1.2e+02 Score=32.97 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
..+..++..++++...|..+=.+|+.+++.|.++-..+.+|+
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 345556666666666666666666666665555555555554
No 120
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=41.37 E-value=1.3e+02 Score=23.64 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=11.3
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
+...|.+|+|+...+..-+.+|.+
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~ 32 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIA 32 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 444455555554444444444443
No 121
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=1.2e+02 Score=27.63 Aligned_cols=45 Identities=18% Similarity=0.257 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
+++-|+.|++....|..-+..+++..+.+..++..+.+.++...+
T Consensus 92 ~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q 136 (145)
T COG1730 92 ADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQ 136 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777776666666666666666666666665554433
No 122
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=40.70 E-value=1.3e+02 Score=27.19 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=8.1
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRR 148 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL 148 (412)
.+|..|.+.+..|..+|.++
T Consensus 35 ~EI~sL~~K~~~lE~eld~~ 54 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKL 54 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 123
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=40.48 E-value=22 Score=38.47 Aligned_cols=28 Identities=14% Similarity=0.246 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEY 157 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~ 157 (412)
++++.+| +.+.|.+||++|++|+..+..
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhccccc
Confidence 3444444 445555555555544443333
No 124
>smart00338 BRLZ basic region leucin zipper.
Probab=40.06 E-value=1.1e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 139 SLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 139 ~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..|..++..|..++..|..++..|+..+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445444444443
No 125
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.80 E-value=1.8e+02 Score=28.68 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=19.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.++..|+.+...|..++..++.++..+...+..+++|..
T Consensus 67 ~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 67 ARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555543
No 126
>PRK14163 heat shock protein GrpE; Provisional
Probab=39.66 E-value=1.6e+02 Score=28.62 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
..+..+|..|+.+...|...+.|++-+.+++..++..=
T Consensus 43 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 43 AGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666555555555444433
No 127
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=39.53 E-value=1.7e+02 Score=31.23 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
+.+|..+.+.......++.+++++...+...+..|+.
T Consensus 72 e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 72 ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 128
>PF03127 GAT: GAT domain; InterPro: IPR004152 The GAT domain is responsible for binding of GGA proteins to several members of the ARF family including ARF1 [] and ARF3. The GAT domain stabilises membrane bound ARF1 in its GTP bound state, by interfering with GAP proteins [].; GO: 0006886 intracellular protein transport, 0005622 intracellular; PDB: 1YD8_H 1WR6_C 1WRD_A 1O3X_A 1J2J_B 1NWM_X 1X79_A 1OXZ_A 1NAF_A.
Probab=39.29 E-value=1.6e+02 Score=24.55 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAE 198 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q~~~ 198 (412)
..+..+|+..+.....|..-|..+. ...........+.+-+..|+.-|.+|+.++..+-. ..++..|++-++
T Consensus 7 ~k~~~~l~~v~~~~~lL~emL~~~~-~~~~~~~~~el~~eL~~~ck~~r~~i~~li~~~~d-ee~l~~lL~~ND 78 (100)
T PF03127_consen 7 SKRRSELEKVKNNAKLLNEMLDNYD-PGEESSSDNELIQELYESCKSMRPRIQRLIEEVED-EELLGELLQAND 78 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-TTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcCc-HHHHHHHHHHHH
Confidence 3456788888775544444444444 44444555556667777788888888888766444 447777777665
No 129
>PRK14154 heat shock protein GrpE; Provisional
Probab=39.29 E-value=1.5e+02 Score=28.61 Aligned_cols=40 Identities=8% Similarity=0.266 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
..+..+|+.|+++...|...+.|++-+.+++..+++.-++
T Consensus 55 ~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e 94 (208)
T PRK14154 55 EKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKA 94 (208)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777776666666666655555555444333
No 130
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.15 E-value=1.1e+02 Score=31.73 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRES 150 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~q 150 (412)
.|...+..|-.+||++++.|..||.+|+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~ 60 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLEN 60 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888888888888888744
No 131
>PHA02562 46 endonuclease subunit; Provisional
Probab=39.14 E-value=1.5e+02 Score=31.60 Aligned_cols=53 Identities=9% Similarity=0.169 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhcCCchh
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ------TQMIACLANLLKKPGFS 190 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q------q~mlsfL~~vlq~p~f~ 190 (412)
...|..++.+|+.....+..++..+.++|..+...+ ......+...++++||-
T Consensus 360 ~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~~~~g~~ 418 (562)
T PHA02562 360 AKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKDSGIK 418 (562)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334444444444444444444444444444333222 22334455555555554
No 132
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=39.07 E-value=1.3e+02 Score=33.61 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred ccccccccccccccccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 87 ANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 87 ~h~~F~Rg~~~lL~~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
....|..-+..|.+.|+||-. .+-..|+ + |..-.+.|..|..+...|..|=.+|.+++-++...+..|+++|
T Consensus 477 s~~~lte~QLslIrDIRRRgK-NkvAAQn---C----RKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqql 548 (604)
T KOG3863|consen 477 SKYKLTEEQLSLIRDIRRRGK-NKVAAQN---C----RKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQL 548 (604)
T ss_pred HhcccCHHHHHHhhccccccc-cchhccc---h----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566678899999998732 2222222 2 1112234444555555555555555555555556666666555
Q ss_pred HHHH
Q 015162 167 RYLE 170 (412)
Q Consensus 167 ~~~e 170 (412)
..+.
T Consensus 549 s~L~ 552 (604)
T KOG3863|consen 549 SELY 552 (604)
T ss_pred HHHH
Confidence 5443
No 133
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=39.05 E-value=1.4e+02 Score=32.66 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
.++.++..++..|+.+|..++.+...+..+...|.+.|+.+.+.|.+|..-+..+
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~El 280 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEEL 280 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3445555566667777777777777777777777777777777777777665553
No 134
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=38.70 E-value=1.1e+02 Score=33.17 Aligned_cols=57 Identities=11% Similarity=0.286 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
...|..+|..|.+++..+..+|... ++.++.|...|.+.+..|..++..|.+||..+
T Consensus 424 ~~~l~~~i~~l~~~i~~~~~rl~~~---e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 424 TDSLNKQIKSLDKDIKSLDKRLEAA---EERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567788888888888888877764 45678888899999998988888888887653
No 135
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=38.68 E-value=2.1e+02 Score=28.80 Aligned_cols=34 Identities=12% Similarity=0.286 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
..+..++.|...|..++.+-+++.+..+++++.|
T Consensus 183 ~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sL 216 (267)
T PF10234_consen 183 QQLNNLASDEANLEAKIEKKKQELERNQKRLQSL 216 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444
No 136
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.51 E-value=1.1e+02 Score=25.74 Aligned_cols=43 Identities=16% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
..+-+..|......|..++.++..+...+..++..++.+|..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888888888888888888888877654
No 137
>PHA01750 hypothetical protein
Probab=38.32 E-value=1.3e+02 Score=24.19 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 135 KKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 135 K~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+++...|..|++.++-.+-++++|+..++.++
T Consensus 41 ~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 41 NSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 34444455555555544555555555555443
No 138
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=37.97 E-value=1.4e+02 Score=27.33 Aligned_cols=29 Identities=14% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYH 158 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~q 158 (412)
++++|+.++..+...+.+-+++.+.|..|
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q 30 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQ 30 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665554444444444
No 139
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=37.81 E-value=2.2e+02 Score=23.02 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=16.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFE 156 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~ 156 (412)
.++..|..+++.|..++..++++.+.+.
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~~~k 30 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQKLK 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666555544333
No 140
>PF14282 FlxA: FlxA-like protein
Probab=37.50 E-value=1.4e+02 Score=25.48 Aligned_cols=53 Identities=11% Similarity=0.318 Sum_probs=35.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHH----HHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 121 ETERNEFEAKIERLKKENSLLQL----ELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~----EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
+.....|...|..|+.....|.. --..-+++.+.|..||..|...|..+...+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888777777766 122334566777788888888877554443
No 141
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=37.44 E-value=1.2e+02 Score=26.62 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
+.+-++.|++....|...+.++.++...+..++..+.+.+..+..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677777777777776666666666666666666554443
No 142
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=37.28 E-value=1.2e+02 Score=31.60 Aligned_cols=48 Identities=27% Similarity=0.487 Sum_probs=34.5
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccH----------HHHHHHHHHHHHHHHH
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNH----------EFEYHVQSVRERLRYL 169 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq----------~l~~qvq~L~erL~~~ 169 (412)
.+...+..++.+|+++...|..||.+.+.... .+..++..|++.|..+
T Consensus 87 ~e~Es~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l 144 (388)
T PF04912_consen 87 SEKESPEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSL 144 (388)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHh
Confidence 34567889999999999999999998754322 2345666666666555
No 143
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.20 E-value=1.6e+02 Score=32.52 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=4.6
Q ss_pred hhhhhcccc
Q 015162 49 DFAKDLLPL 57 (412)
Q Consensus 49 ~F~~~vLp~ 57 (412)
.|...-||+
T Consensus 76 ~F~ayyLPk 84 (546)
T PF07888_consen 76 QFQAYYLPK 84 (546)
T ss_pred EECcccCCC
Confidence 355555554
No 144
>PRK00846 hypothetical protein; Provisional
Probab=36.93 E-value=2.3e+02 Score=23.23 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.3
Q ss_pred HHHHHH
Q 015162 129 AKIERL 134 (412)
Q Consensus 129 ~eI~~L 134 (412)
..|..|
T Consensus 13 ~Ri~~L 18 (77)
T PRK00846 13 ARLVEL 18 (77)
T ss_pred HHHHHH
Confidence 333333
No 145
>PRK14127 cell division protein GpsB; Provisional
Probab=36.81 E-value=1.1e+02 Score=26.70 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++.+-.+...|..|+.+|+.++..++.++..++.++.
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444456777777777777776666666666666555
No 146
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=36.79 E-value=1.1e+02 Score=33.26 Aligned_cols=46 Identities=9% Similarity=0.124 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
+...+.|+++...|..|+..+..+.+.++.+|..|+..+..++.++
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666555555566666666666666555544
No 147
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=36.72 E-value=1.7e+02 Score=30.58 Aligned_cols=52 Identities=25% Similarity=0.379 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
++.+++.+..+...|..+|.+.. ....++..+++++...+++...+-.++..
T Consensus 247 l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 247 LQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444443332 55677778888888888877777766554
No 148
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=36.33 E-value=90 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
...|..++..|..++..|..++..|+
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 149
>PRK00736 hypothetical protein; Provisional
Probab=35.96 E-value=2.2e+02 Score=22.51 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 015162 129 AKIERLKKE 137 (412)
Q Consensus 129 ~eI~~LK~d 137 (412)
..|..|.-.
T Consensus 5 ~Ri~~LE~k 13 (68)
T PRK00736 5 ERLTELEIR 13 (68)
T ss_pred HHHHHHHHH
Confidence 334444333
No 150
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=35.95 E-value=1.9e+02 Score=28.28 Aligned_cols=52 Identities=12% Similarity=0.149 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
|+.++++.+.|..|-..+-++.+.+.+.+..|+.-+...+....++...+.+
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r 85 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQR 85 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444555555444444444444444444
No 151
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=35.80 E-value=1.3e+02 Score=31.20 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQS--VRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~--L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+|.-.|+.++..|.+|...|+.+...|+.++.. +.++...++-.-.+++..+.+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d~i~Kimnk 87 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCEDVETNDVIYDKIVKIMNK 87 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 466667777777777777777777777666654 555655555444444444444
No 152
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.61 E-value=1.8e+02 Score=30.36 Aligned_cols=23 Identities=13% Similarity=0.128 Sum_probs=11.2
Q ss_pred CceEEcCC----CCeEEEeCCchhhhh
Q 015162 31 SLVSWSQS----GGSFIVWNPPDFAKD 53 (412)
Q Consensus 31 ~iI~W~~~----G~sFiI~d~~~F~~~ 53 (412)
+||=|-.| .--|+-.||..+...
T Consensus 71 PV~iWlldtyP~~pP~c~VnPT~~M~i 97 (365)
T KOG2391|consen 71 PVIIWLLDTYPYYPPICYVNPTSTMII 97 (365)
T ss_pred eEEEEecccCCCCCCeEEecCCchhhh
Confidence 34556433 233455566665544
No 153
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=35.57 E-value=1.4e+02 Score=28.18 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=6.8
Q ss_pred CChhhhhhHHHHHH
Q 015162 119 ITETERNEFEAKIE 132 (412)
Q Consensus 119 ~t~~e~~~l~~eI~ 132 (412)
.+..||..|.+.++
T Consensus 74 ~T~~ERR~~~~~l~ 87 (179)
T PF13942_consen 74 PTPAERRQMVDRLN 87 (179)
T ss_pred CCHHHHHHHHHHHH
Confidence 44555555444443
No 154
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=35.57 E-value=2.1e+02 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 134 LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
|...+..|.++-..++.+++.|..+|+.|.+
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqe 109 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQE 109 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444433
No 155
>PRK14162 heat shock protein GrpE; Provisional
Probab=35.33 E-value=2.2e+02 Score=27.24 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEY 157 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~ 157 (412)
.+..+++.|+.+...|...+.|++-+.+++..
T Consensus 43 ~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rk 74 (194)
T PRK14162 43 DLEKEIADLKAKNKDLEDKYLRSQAEIQNMQN 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444444444333
No 156
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=35.27 E-value=16 Score=24.76 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=16.3
Q ss_pred hhcCCCCCCceEEcCCCCeEEEe
Q 015162 23 MVDDPLTNSLVSWSQSGGSFIVW 45 (412)
Q Consensus 23 mv~d~~~~~iI~W~~~G~sFiI~ 45 (412)
+++.+..+....|++||+.++..
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~ 26 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFT 26 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEE
Confidence 55666667778999999998765
No 157
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.17 E-value=2.2e+02 Score=24.59 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
.+..+|..||.....|..|=.+|+-+++.|...+..+.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555544443
No 158
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.10 E-value=1.7e+02 Score=30.01 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhh------------------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRES------------------GNHEFEYHVQSVRERL----RYLENRQTQMIACLAN 182 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~q------------------qqq~l~~qvq~L~erL----~~~e~~Qq~mlsfL~~ 182 (412)
..+..++..|..+|..|..|..+|+. +......+|..|.+-| .....+|..|.+.+++
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsq 242 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQ 242 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888777772 2223334444444433 3345777888888888
Q ss_pred Hhc
Q 015162 183 LLK 185 (412)
Q Consensus 183 vlq 185 (412)
++.
T Consensus 243 ivd 245 (306)
T PF04849_consen 243 IVD 245 (306)
T ss_pred HHH
Confidence 765
No 159
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.97 E-value=86 Score=30.98 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
+..+=+++|..+..|..|+.+++++...++.++..|+.
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777777666666666666554
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.94 E-value=2.6e+02 Score=28.48 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhh
Q 015162 127 FEAKIERLKKENSLLQLELRRRES 150 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~q 150 (412)
+..+++.|.++...|..|+..++.
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 161
>PRK14158 heat shock protein GrpE; Provisional
Probab=34.82 E-value=2.6e+02 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
++..|+.+...|..++..++.++..+...+...+.|..
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~ 78 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQ 78 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444555555555543
No 162
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.80 E-value=1.4e+02 Score=28.05 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=11.1
Q ss_pred cccccccccccccccccccc
Q 015162 87 ANEEFIRGQRHLLKNIHRRK 106 (412)
Q Consensus 87 ~h~~F~Rg~~~lL~~I~Rr~ 106 (412)
.|-.|...+...|..|+|-+
T Consensus 34 G~R~y~~~dl~~L~~I~~l~ 53 (175)
T PRK13182 34 GHYIFTEEDLQLLEYVKSQI 53 (175)
T ss_pred CCEEECHHHHHHHHHHHHHH
Confidence 34444455556666666544
No 163
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=34.70 E-value=1.4e+02 Score=27.45 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=23.2
Q ss_pred CCCChhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 015162 117 TPITETERNEFEAKIERLKKENSLLQLELRRRE 149 (412)
Q Consensus 117 ~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~ 149 (412)
.++|......|+.|++.|+.....+..++..-+
T Consensus 6 ~~lT~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar 38 (158)
T PRK05892 6 KGLAPAARDHLEAELARLRARRDRLAVEVNDRG 38 (158)
T ss_pred CccCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 346777788888999999876666666654433
No 164
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=1.9e+02 Score=32.30 Aligned_cols=14 Identities=7% Similarity=-0.014 Sum_probs=7.4
Q ss_pred CCCchHHHHHHhhc
Q 015162 12 SPAPFLIKTYEMVD 25 (412)
Q Consensus 12 ~~~~Fl~KLy~mv~ 25 (412)
.+|-|+.|+-.+++
T Consensus 299 p~P~~V~KiAasf~ 312 (652)
T COG2433 299 PAPETVKKIAASFN 312 (652)
T ss_pred CChHHHHHHHHHcC
Confidence 34456666555544
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.29 E-value=2.1e+02 Score=28.02 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
..+..+++.|..++.....+|+...++...|+..+...+..........+++.
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ 87 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLY 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777766665444443333333
No 166
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=34.21 E-value=1.1e+02 Score=30.79 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.|++.-+.+-..|..++..|+.++..+.+++..+++.|.
T Consensus 71 ~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~e 109 (389)
T PF06216_consen 71 FERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIE 109 (389)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555443
No 167
>PRK14154 heat shock protein GrpE; Provisional
Probab=34.20 E-value=2e+02 Score=27.84 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
+++.|+.+...|..++..++.++..+...+...++|...
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~k 91 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIER 91 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888889999999988888888888888888663
No 168
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.19 E-value=1.9e+02 Score=26.97 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 153 HEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 153 q~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+.+..+|..|+..+.....+.+.++.-|..
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444444
No 169
>PRK14139 heat shock protein GrpE; Provisional
Probab=34.16 E-value=2.3e+02 Score=26.84 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQ 160 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq 160 (412)
+...+..+|+.|+.+...|...+.|+.-+.+++..++.
T Consensus 33 e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~ 70 (185)
T PRK14139 33 AAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQ 70 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666655555555555544444444433
No 170
>PRK14140 heat shock protein GrpE; Provisional
Probab=34.11 E-value=2.6e+02 Score=26.68 Aligned_cols=39 Identities=10% Similarity=0.189 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..|+.++.....|..++..++.++..+...+...+.|..
T Consensus 37 ~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~ 75 (191)
T PRK14140 37 ELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQ 75 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666555555666666666654
No 171
>PRK15396 murein lipoprotein; Provisional
Probab=34.05 E-value=2.4e+02 Score=23.21 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+..+++.|+.+...|..++..++..-+..+.+-..-.+||.
T Consensus 29 ~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 29 QLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554444444444444444444443
No 172
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.03 E-value=2.5e+02 Score=28.61 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
++.++|.+...+..++...+.+...++.+++.++.++.....+.+.+..-|.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~ 256 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555555555555555444444444333
No 173
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=33.86 E-value=3.1e+02 Score=25.99 Aligned_cols=8 Identities=38% Similarity=0.617 Sum_probs=3.7
Q ss_pred cccccccc
Q 015162 71 LNTYGFRK 78 (412)
Q Consensus 71 LN~YGF~K 78 (412)
|-.+||..
T Consensus 81 LE~~GFnV 88 (190)
T PF05266_consen 81 LEEHGFNV 88 (190)
T ss_pred HHHcCCcc
Confidence 34455543
No 174
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.78 E-value=1.9e+02 Score=31.21 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=40.5
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
+++.+|.....+..|+..+++++..++...+.++.+++....+++++..-|.
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~ 399 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELK 399 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777888888888888888888888888888888777766666655443
No 175
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.77 E-value=2.6e+02 Score=30.08 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCchhh
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL----RYLENRQTQMIACLANLLKKPGFSS 191 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL----~~~e~~Qq~mlsfL~~vlq~p~f~~ 191 (412)
..+.+.++.+...|.++|.++..+++.+..+++.++.+- +.+.+..+.--.+..+++...+-+.
T Consensus 182 ~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~ 249 (447)
T KOG2751|consen 182 LKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELD 249 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 345555666666666666666666666666666655542 2222333333444444444444333
No 176
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=33.75 E-value=1.8e+02 Score=32.86 Aligned_cols=51 Identities=8% Similarity=0.191 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC 179 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf 179 (412)
.+..+|.++.+++..+..+|..++ +.++.|...|+..|..|..++.-|.++
T Consensus 604 ~l~~~i~~l~~~i~~~e~rl~~~e---~rl~~QFtaME~~msqmnsqss~L~~~ 654 (661)
T PRK06664 604 GLDERIADNNKKIEEYEKKLESKE---RKLKGKYLTMDQTVKKMKEQSNYLKNF 654 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444332 234444444444444444444333333
No 177
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=33.67 E-value=2.6e+02 Score=22.63 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNH 153 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq 153 (412)
++..|+.|++++-.|..++.-|++..+
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456777777777777777666655433
No 178
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=33.52 E-value=1.6e+02 Score=32.28 Aligned_cols=8 Identities=0% Similarity=0.447 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 015162 158 HVQSVRER 165 (412)
Q Consensus 158 qvq~L~er 165 (412)
.+..|++.
T Consensus 470 ~i~~LqDE 477 (518)
T PF10212_consen 470 NISRLQDE 477 (518)
T ss_pred HHHHHHHH
Confidence 33333333
No 179
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=33.49 E-value=18 Score=38.78 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQ 160 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq 160 (412)
.+...-.+++.|+.++.+|+.+|+.|..|++
T Consensus 280 rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~ 310 (472)
T KOG0709|consen 280 RVSAFTAENQELQKKVEELELSNRSLLAQLK 310 (472)
T ss_pred hhhhcccCcHHHHHHHHHHhhccHHHHHHHH
Confidence 3333334444445555554444444444443
No 180
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=33.48 E-value=98 Score=30.96 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=11.1
Q ss_pred HHHHHHHHhHHHHHHHHHHh
Q 015162 130 KIERLKKENSLLQLELRRRE 149 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~ 149 (412)
.+..|+++|..|..|+..++
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~ 86 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKN 86 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655553
No 181
>PRK14143 heat shock protein GrpE; Provisional
Probab=33.37 E-value=2.5e+02 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=37.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+...+..+|+.|+.+...|..++.|+.-+..++..++..-++.+.
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356688899999999999999999999999999988877666554
No 182
>PRK10722 hypothetical protein; Provisional
Probab=33.22 E-value=1.4e+02 Score=29.66 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=16.9
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 142 QLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 142 ~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
..+|.+|+|++..++.++....++|..+.
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLT 203 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLT 203 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666655555443
No 183
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=33.21 E-value=2.1e+02 Score=26.64 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
.|..-|+.|. ....+..+|..|+++...+..++..+-..|..+++.-..++
T Consensus 13 ~L~~~L~~l~-~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 13 ELSSALEELQ-EHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566664 34566888888998888888888888888888877555555
No 184
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=32.90 E-value=2.9e+02 Score=22.99 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
..++.+|+.|..+...|-.+|.........++.-...+..||...-.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888887776666666666666666664433
No 185
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=32.79 E-value=1.4e+02 Score=25.37 Aligned_cols=40 Identities=18% Similarity=0.429 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+-+..|+.....+...+..+..+...+..++..++.+|+
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666555555544
No 186
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.37 E-value=2.2e+02 Score=27.43 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQ 160 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq 160 (412)
...+..+|+.|+.+...|..++.|++-+.+++..+++
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~ 51 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAE 51 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776666666655555555444
No 187
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.20 E-value=1.9e+02 Score=29.43 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+.|+.|+.-|...|+.|..|+..|+..++
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 188
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=32.14 E-value=34 Score=37.07 Aligned_cols=26 Identities=8% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 144 ELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 144 EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
+|..|++|.+.|+.|+..|.+|+...
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 55555555555555544444444433
No 189
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=31.98 E-value=2.5e+02 Score=31.08 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 015162 138 NSLLQLELRR 147 (412)
Q Consensus 138 ~~~L~~EL~r 147 (412)
+..|..+|..
T Consensus 173 v~~l~~eL~~ 182 (546)
T PF07888_consen 173 VERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 190
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=31.87 E-value=2.5e+02 Score=24.55 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
+.+..++...+..|.+++..|..-++.|++++....+.+..|+.+|.-...
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 191
>PRK15396 murein lipoprotein; Provisional
Probab=31.84 E-value=2.1e+02 Score=23.46 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
.+++.|..+...|..++..+.+..+.+...++.-++.-.+.-+|...+.
T Consensus 25 ~kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 25 AKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788899999999999999988888888888888877666666655554
No 192
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=31.83 E-value=3.2e+02 Score=24.10 Aligned_cols=43 Identities=28% Similarity=0.249 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
...++.+...+..|......++.+...+..++..+-+.+...+
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~ 75 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELE 75 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433333333333333333333333333
No 193
>PRK07857 hypothetical protein; Provisional
Probab=31.82 E-value=2.1e+02 Score=24.92 Aligned_cols=64 Identities=20% Similarity=0.210 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcCCchhhh
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR---YLENRQTQMIACLANLLKKPGFSSA 192 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~---~~e~~Qq~mlsfL~~vlq~p~f~~~ 192 (412)
.+++.|+.++..+-.+|.+|=.+...+-.+|..++.... ....+-++++..+...+..+|-...
T Consensus 28 ~~L~~lR~eID~ID~eIl~LL~eR~~la~eIg~~K~~~g~pI~dp~RE~eVl~rl~~~lg~~g~~~a 94 (106)
T PRK07857 28 AEIDELREEIDRLDAEILALVKRRTEVSQAIGKARMASGGTRLVHSREMKVIERYREELGPEGKDLA 94 (106)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccChHHHHHHHHHHHHHhCCccHHHH
Confidence 456666677777777777777777777777777776432 2245667888888888988886554
No 194
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.79 E-value=1.9e+02 Score=32.49 Aligned_cols=50 Identities=26% Similarity=0.359 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
+..+..+|++|+.++..|..+|..+..+...-+..+..+-+++....++|
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~ 130 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQ 130 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777666666666555555555555555444444
No 195
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.70 E-value=1.1e+02 Score=26.37 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
|+-|=+-+..|...+..++++.+.+..+++.+++.+...+
T Consensus 68 ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~ 107 (118)
T PF13815_consen 68 IEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQK 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555554444333
No 196
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=31.48 E-value=2e+02 Score=30.77 Aligned_cols=31 Identities=6% Similarity=0.089 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
...|..++.++..+...++.+|..+++||..
T Consensus 408 ~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~ 438 (462)
T PRK08032 408 TDGVNKTLKKLTKQYNAVSDSIDATIARYKA 438 (462)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555543
No 197
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=31.43 E-value=1.5e+02 Score=30.11 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHHH---------HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 128 EAKIERLKKENSLL---------QLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 128 ~~eI~~LK~d~~~L---------~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
..++.+.|++++.+ .+|...+.-+.+.|+.+-..|++++..+|+..+-|-.+|..+.
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666665554 2223333344556666667777777777777766666655543
No 198
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.32 E-value=2.8e+02 Score=22.31 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
+.......+...+.|...+...++++..|..++..|.+++..+
T Consensus 19 y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~L 61 (70)
T PF04899_consen 19 YEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRL 61 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555555444
No 199
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=31.30 E-value=1.5e+02 Score=32.74 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.++.++..+|+....|..++.+|+.++..|+.+++.++..|.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999997653
No 200
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.29 E-value=2.5e+02 Score=31.26 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p 187 (412)
.+..+|+.|+.+...+..++..++.+...+..++..++......+ .+..+...+..++.++
T Consensus 332 ~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le-~~~~l~~k~~~lL~d~ 392 (594)
T PF05667_consen 332 ELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE-EELKLKKKTVELLPDA 392 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCc
Confidence 344444444444444444444444444444444443333333222 2344566666677776
No 201
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=31.15 E-value=1.6e+02 Score=31.93 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
.+.+-|.+||+++..-+..++.|+-.+-.|+..+..|.=++. +|+.++..+.+
T Consensus 314 aLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~----kQqvfvDiink 366 (527)
T PF15066_consen 314 ALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT----KQQVFVDIINK 366 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh----hhhHHHHHHHH
Confidence 356778899999998888999998888888888877765544 56666665555
No 202
>PRK07737 fliD flagellar capping protein; Validated
Probab=30.88 E-value=1.7e+02 Score=31.69 Aligned_cols=44 Identities=7% Similarity=0.211 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
+..+|.+|.+++..|..+|..++. .++.|...|+.-+.+|..++
T Consensus 446 l~~~i~~l~~~i~~~~~rl~~~e~---ry~~qf~ale~~~s~mnsq~ 489 (501)
T PRK07737 446 IGKDLNQIETQIDRFQDRLKQIED---RYYKKFSAMEKAIQKANEQS 489 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443322 23344444444444443333
No 203
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=30.77 E-value=1.5e+02 Score=24.61 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
+...++.|.+++..|+.+|..++....=...+++.+.+|+...
T Consensus 5 ~lk~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~L 47 (84)
T PF11414_consen 5 MLKRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQERQRHL 47 (84)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457788889999999999998887777777888888875433
No 204
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=30.77 E-value=1.5e+02 Score=31.62 Aligned_cols=42 Identities=7% Similarity=0.180 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
.+..+|.+|.+++..|..+|.+++ +.++.|...|+..+..|.
T Consensus 410 ~l~~~i~~l~~~i~~~~~rl~~~e---~rl~~qF~ame~~~s~mn 451 (462)
T PRK08032 410 GVNKTLKKLTKQYNAVSDSIDATI---ARYKAQFTQLDKLMTSLN 451 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444433 233444444444444333
No 205
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.72 E-value=2.9e+02 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
..++..|+.+...|..++..++.....+..++...+.|..
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~ 83 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTE 83 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666654
No 206
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=30.64 E-value=1.3e+02 Score=25.34 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
++.+-++.+++....|...+.+++++...+..++..+...++.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777666666666666655543
No 207
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.48 E-value=1.3e+02 Score=32.92 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKP 187 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p 187 (412)
..+..+|+.|.+....+...+..-..-+..+...+..+.++|..++..|..|...|..+-++-
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE 409 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDE 409 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777776667777788888888888888999988888887766543
No 208
>PRK14155 heat shock protein GrpE; Provisional
Probab=30.16 E-value=2.1e+02 Score=27.62 Aligned_cols=41 Identities=10% Similarity=0.133 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
..+.+.|+.+...|..++..++.++..+..++...++|...
T Consensus 12 ~~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~k 52 (208)
T PRK14155 12 PFEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAER 52 (208)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888887653
No 209
>PRK14161 heat shock protein GrpE; Provisional
Probab=30.16 E-value=3.2e+02 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=15.1
Q ss_pred HHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 134 LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+..+...|..++..++.++..+..++...+.|..
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444445555555543
No 210
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=30.03 E-value=65 Score=26.44 Aligned_cols=8 Identities=25% Similarity=0.289 Sum_probs=3.5
Q ss_pred hhcccccc
Q 015162 200 HSKKRRLL 207 (412)
Q Consensus 200 ~~kKRRl~ 207 (412)
..+|=.++
T Consensus 37 Pe~kvkFt 44 (76)
T PF07334_consen 37 PEKKVKFT 44 (76)
T ss_pred ccccCcCC
Confidence 33444444
No 211
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=29.96 E-value=2.3e+02 Score=31.51 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
.+...|+.|..--..+..+|..-+.+-..+-.++..|+++.+..+.+++-+..|+.+.
T Consensus 49 ~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 49 RLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455566666666666777777777777777888889999999999999999998883
No 212
>PRK14157 heat shock protein GrpE; Provisional
Probab=29.90 E-value=2.7e+02 Score=27.37 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
.+..+|..|+.+...+..++.|++-+.+++..++..-++++
T Consensus 81 ~~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 81 DTLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888888887777777776665555443
No 213
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.88 E-value=2.2e+02 Score=33.84 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=28.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
++..++.+++.|+++++.|...+.+|+++.+.+...+...++++
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455666677777777777777777766666666655555544
No 214
>PRK14153 heat shock protein GrpE; Provisional
Probab=29.62 E-value=2e+02 Score=27.43 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+..+..+...|..++..++.++..+..++...++|..
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555555544
No 215
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.57 E-value=3.8e+02 Score=24.92 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
..++.+|..+-+---....||-+-++-..+++.+-+....-|...|..--.-+.||.+|-.
T Consensus 15 ~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~t 75 (180)
T KOG4057|consen 15 VTIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCT 75 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677776666667778888888888889999999999999999888888889988864
No 216
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=29.50 E-value=2.3e+02 Score=25.23 Aligned_cols=62 Identities=16% Similarity=0.230 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
..++...++.=+.....+...|..+......+...-.....|+..+.+++..|..-+.+|+.
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~ 93 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLR 93 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554555555666666666666666666666777777777777777776666443
No 217
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=29.49 E-value=2.6e+02 Score=29.98 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=41.4
Q ss_pred hhhccccccccccCCCCcccccccccccccccccccccccCCCCCCCCCCCCCChhhhhhHHHHHHHHHHHhHHHHHHHH
Q 015162 67 FVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPITETERNEFEAKIERLKKENSLLQLELR 146 (412)
Q Consensus 67 FvRQLN~YGF~Kv~~~~~eF~h~~F~Rg~~~lL~~I~Rr~~~~s~~~~~~~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~ 146 (412)
+.||-+.=|-.-..|+...|.|+. -|-+- |....|. ..+..-+++.+..|+.+...+...|.
T Consensus 126 YfR~~~~~~~~~~~p~~~~FG~E~-----tH~C~-m~~~~p~------------~vQ~~L~~~Rl~~L~~qi~~~~~~l~ 187 (475)
T PF10359_consen 126 YFRQTDYGDKYQGDPKRSSFGNEP-----THDCL-MGDNDPR------------RVQIELIQERLDELEEQIEKHEEKLG 187 (475)
T ss_pred EEeecCCCCcCCCCCCcCcCCCCC-----ceeeE-eecCCcc------------hHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445544444444555555566654 44333 3332221 12233455666677766666666666
Q ss_pred HHhh--ccHHHHHHHHHHHHHHHHHHH
Q 015162 147 RRES--GNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 147 rL~q--qqq~l~~qvq~L~erL~~~e~ 171 (412)
.++- ....+..++..+.+++..+..
T Consensus 188 ~~~~~~~~~~~~~~~~~l~~~~~~l~~ 214 (475)
T PF10359_consen 188 ELELNPDDPELKSDIEELERHISSLKE 214 (475)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHH
Confidence 5431 233334444444444443333
No 218
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=29.43 E-value=2.9e+02 Score=25.75 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
.|..|+.++..|..++..+..+......-++.+.+.+
T Consensus 117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333333333333
No 219
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.40 E-value=2.9e+02 Score=26.86 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
..++..|+.....|..++..++.++..+..++...++|...-
T Consensus 39 ~~~~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE 80 (214)
T PRK14163 39 AAATAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERD 80 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999997643
No 220
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=29.31 E-value=1.3e+02 Score=28.91 Aligned_cols=38 Identities=18% Similarity=0.194 Sum_probs=27.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+|-+.|+.+...+..|+..|||-...-+..+..|+++|
T Consensus 44 ~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 44 EEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556777777777888888877777677777777765
No 221
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.24 E-value=1.4e+02 Score=23.67 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
.+..+..+...+..++..++.++..|..++..|.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444445555555555555555555555444433
No 222
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.00 E-value=95 Score=23.05 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHh
Q 015162 127 FEAKIERLKKENSLLQLELRRRE 149 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~ 149 (412)
++.++..|..++..|..++..|+
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444443
No 223
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.96 E-value=3.5e+02 Score=25.44 Aligned_cols=24 Identities=46% Similarity=0.552 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELR 146 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~ 146 (412)
+|..+..+++.|+.++..|..+|.
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444
No 224
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=28.91 E-value=84 Score=32.67 Aligned_cols=59 Identities=24% Similarity=0.427 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGN----HEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqq----q~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
..+..+|+.||+.+..+..++..+.... ..+..+|..+++|+..++.+...|..-+...
T Consensus 108 ~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 108 KELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ----------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
No 225
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.86 E-value=1.9e+02 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=17.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRER 165 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~er 165 (412)
+..|+...+.+..++.+|..+...+..++..++..
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~ 107 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAK 107 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555544444444444443
No 226
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=28.75 E-value=1.9e+02 Score=30.40 Aligned_cols=44 Identities=9% Similarity=0.215 Sum_probs=20.6
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 142 QLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 142 ~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
+..++.++-+++.|+..++.|++.+..+..+-+.++.-+..+++
T Consensus 336 qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLq 379 (400)
T COG5613 336 QADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQ 379 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444455555555555544444455544444444
No 227
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=28.72 E-value=1.1e+02 Score=29.91 Aligned_cols=14 Identities=43% Similarity=0.522 Sum_probs=5.2
Q ss_pred HHHHhHHHHHHHHH
Q 015162 134 LKKENSLLQLELRR 147 (412)
Q Consensus 134 LK~d~~~L~~EL~r 147 (412)
+++++..|..|+.+
T Consensus 74 l~~en~~L~~e~~~ 87 (276)
T PRK13922 74 LREENEELKKELLE 87 (276)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 228
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.62 E-value=2.1e+02 Score=34.37 Aligned_cols=60 Identities=15% Similarity=0.316 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLEN------RQTQMIACLANLL 184 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~------~Qq~mlsfL~~vl 184 (412)
..+..+|..+|.+......+|.+++.+.+++..++..+++|+..+.. .+.+++.+|.++-
T Consensus 545 ~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~k 610 (1293)
T KOG0996|consen 545 DDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLK 610 (1293)
T ss_pred HHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888765432 3456666666543
No 229
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.52 E-value=2.1e+02 Score=28.28 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
.+|+.+...+..|..+...+..++..|+++...++..-..|-||++.+.
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666666666666666666666666666665443
No 230
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=28.16 E-value=2.3e+02 Score=32.21 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=17.7
Q ss_pred HHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 134 LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+|.....|..|+.+|+.+....+.++..|++.+
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555544
No 231
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.91 E-value=2.6e+02 Score=29.19 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 015162 158 HVQSVRERL 166 (412)
Q Consensus 158 qvq~L~erL 166 (412)
+|..++++|
T Consensus 250 kL~~~~etL 258 (365)
T KOG2391|consen 250 KLVAMKETL 258 (365)
T ss_pred HHHHHHHHH
Confidence 333333333
No 232
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=27.85 E-value=2.9e+02 Score=26.23 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=21.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCchhhhhh
Q 015162 145 LRRRESGNHEFEYHVQSVRERLRYLENRQTQ----MIACLANLLKKPGFSSALN 194 (412)
Q Consensus 145 L~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~----mlsfL~~vlq~p~f~~~L~ 194 (412)
+..++++...+..+-..|.+|+..++..-.. ....+..|.++-||-..++
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lL 148 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLL 148 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444433222 2233444445555544444
No 233
>PRK14147 heat shock protein GrpE; Provisional
Probab=27.55 E-value=3.3e+02 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
..+..+|+.|+.+...|..++.|+.-+.+++..+++.=++
T Consensus 21 ~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e 60 (172)
T PRK14147 21 DPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVE 60 (172)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777776666665555544443
No 234
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.53 E-value=3e+02 Score=29.17 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhc
Q 015162 127 FEAKIERLKKENSLLQLELRRRESG 151 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qq 151 (412)
+..+++.|+++...+..++.++++.
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444444444433
No 235
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=27.41 E-value=43 Score=28.72 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
+..++..|.+++..|..++..|+.+...+......|++.|
T Consensus 30 l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 30 LAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 3445555666666666666555555554444444444433
No 236
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=27.40 E-value=2.6e+02 Score=26.56 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=12.4
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFE 156 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~ 156 (412)
.|..|+.+...|..++..++.++..|.
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 237
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=27.39 E-value=2.3e+02 Score=23.09 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCchhhhhhh
Q 015162 174 TQMIACLANLLKKPGFSSALNQ 195 (412)
Q Consensus 174 q~mlsfL~~vlq~p~f~~~L~q 195 (412)
..|++.-.+++...++..+|+.
T Consensus 42 ~~LLd~w~~IlSQte~~~~Ll~ 63 (78)
T PF08651_consen 42 NTLLDKWIRILSQTEHTQRLLL 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 5677777888877777777764
No 238
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.22 E-value=3.4e+02 Score=27.71 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
..++...+.+...+..+|..|+.+++....+.+.|++.+..++
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~ 276 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETE 276 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555444444444444444444333
No 239
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.18 E-value=2e+02 Score=24.32 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+.+-++.+++....|..++.+++.+...+..++..++..++
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666554
No 240
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=27.12 E-value=2.6e+02 Score=24.11 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=6.1
Q ss_pred HHHHHHhHHHHHHHHHH
Q 015162 132 ERLKKENSLLQLELRRR 148 (412)
Q Consensus 132 ~~LK~d~~~L~~EL~rL 148 (412)
..|+.....+..+..++
T Consensus 83 ~~l~~~~~~~~~~~~~l 99 (118)
T PF13815_consen 83 EQLEERLQELQQEIEKL 99 (118)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 241
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.08 E-value=3.8e+02 Score=26.60 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 132 ERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 132 ~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
..||.+...+...|+.+..++..|-.++..++-.+.....+.+.+
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666666666666666655555555444444443
No 242
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=27.07 E-value=3.5e+02 Score=26.01 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=11.7
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
...|+..|++.|+.|+...+.|++
T Consensus 53 hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 53 HLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555444444
No 243
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.05 E-value=3.2e+02 Score=28.06 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=44.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhh
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALN 194 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~ 194 (412)
+..+.+.++..|..++..+++..+.+-.+...|..+|......|++|.+-|..+-.+-.-...++
T Consensus 228 e~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 228 ENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667777777777777777777778888888888888888877776554433333444
No 244
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=26.95 E-value=3e+02 Score=29.36 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
+.....+...+++++..-..+|.++..+.+.++.++..|-+..+..+
T Consensus 118 ~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~ 164 (499)
T COG4372 118 REAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLE 164 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566666666666667777777777777777766665544433
No 245
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=26.84 E-value=4e+02 Score=24.09 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=15.3
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+..++.....|.....+.++.|..|..+.......+.
T Consensus 41 ~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~ 78 (135)
T TIGR03495 41 ELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLA 78 (135)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444433333
No 246
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=26.80 E-value=1.9e+02 Score=30.41 Aligned_cols=47 Identities=28% Similarity=0.406 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
++..|+.++.+...|.+++.+....+..+..++..|++-++.+|--.
T Consensus 243 vek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~h 289 (561)
T KOG1103|consen 243 VEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADH 289 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 45578888889999999999999888999999999998887777544
No 247
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.70 E-value=3.5e+02 Score=25.40 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=12.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Q 015162 143 LELRRRESGNHEFEYHVQSVRERLRYLENRQ 173 (412)
Q Consensus 143 ~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Q 173 (412)
..+..+..+...|..++..|+.+|..++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 105 QQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444333
No 248
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.62 E-value=3.7e+02 Score=25.57 Aligned_cols=52 Identities=17% Similarity=0.337 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESG--NHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qq--qq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
+.+.+..|++.-..+.+||..|..- ...++..++.|++.+..++.+...+-+
T Consensus 91 l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555444332 233444555555555555555444443
No 249
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.51 E-value=3.1e+02 Score=26.48 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=8.6
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
+..++..++...+.+..++...++
T Consensus 68 ~~~r~~~l~~~i~~~~~~i~~~r~ 91 (302)
T PF10186_consen 68 LRERLERLRERIERLRKRIEQKRE 91 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 250
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=26.48 E-value=2.8e+02 Score=23.05 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhcc
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGN 152 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqq 152 (412)
+..+|+..+.....++..|..|..+.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 251
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.33 E-value=3.8e+02 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
..+..++..||.....|..|=.+|+-+|+.|...+..+
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666666666666655
No 252
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.19 E-value=1.8e+02 Score=24.25 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
++|-.|-.+...+..++..|+.+...+..++..+.
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44555555555555555555555555555554444
No 253
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.07 E-value=3.9e+02 Score=25.53 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
....++..|+.+...|..++..++.++..+..++...+.|...
T Consensus 36 ~~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~k 78 (194)
T PRK14162 36 EKQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAK 78 (194)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999988653
No 254
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=25.84 E-value=3.8e+02 Score=25.55 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
.|..++..++.....+..++..|+.++..++.++..|+.
T Consensus 103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~a 141 (219)
T TIGR02977 103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAI 141 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444455555555544444444443
No 255
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=25.81 E-value=1.6e+02 Score=20.33 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHh
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRE 149 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~ 149 (412)
+.+..+.+.|++..+.|...|..|+
T Consensus 4 qkL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 4 QKLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777777777666654
No 256
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=25.80 E-value=3.1e+02 Score=24.87 Aligned_cols=55 Identities=16% Similarity=0.234 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhHHHHHH-------HH------HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLE-------LR------RRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~E-------L~------rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
.+||-+||+....|... +. .|+.++..|++||..|++.+..+...-.-......+
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666665555432 22 233345556666666666655555544444444444
No 257
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.61 E-value=2.3e+02 Score=29.63 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=26.7
Q ss_pred HHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 132 ERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 132 ~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
.+.|.+...|..-+.+++++++.++.+++.+.+....++.+-+++-.-|+
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 33444445555555556666666666666666555555555445443333
No 258
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.59 E-value=2.2e+02 Score=23.15 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+-+..|+.+...+..++.+++.+...+..++..++..|.
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666777777777777666666666666666554
No 259
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=25.59 E-value=5e+02 Score=26.76 Aligned_cols=45 Identities=24% Similarity=0.424 Sum_probs=35.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
.....+...|..|++++..|..+|...+.....|..++..|++.-
T Consensus 20 ~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 20 ATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567788888888888888888888888888888877777753
No 260
>PRK14139 heat shock protein GrpE; Provisional
Probab=25.44 E-value=4e+02 Score=25.24 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
-..++..|+.+...|..++..++.++..+..++...+.|+..-
T Consensus 30 ~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE 72 (185)
T PRK14139 30 AEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQED 72 (185)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999987643
No 261
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=25.44 E-value=49 Score=37.10 Aligned_cols=19 Identities=32% Similarity=0.835 Sum_probs=14.6
Q ss_pred CCCchHHHhhhhc---CCCccc
Q 015162 343 NRANDQFWEQFLT---ETPAAA 361 (412)
Q Consensus 343 ~~~ND~FWEqFLt---e~P~~~ 361 (412)
++.||.||+|||. .-|.++
T Consensus 27 ~~~~d~FW~qLlsf~~~~p~~s 48 (678)
T PF09742_consen 27 PPDDDPFWNQLLSFSISPPTSS 48 (678)
T ss_pred CCcchHHHHHHHcccCCCCCCh
Confidence 4589999999998 445553
No 262
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.38 E-value=2.5e+02 Score=27.17 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESG---NHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qq---qq~l~~qvq~L~erL~~~e 170 (412)
..++++.++.+.+.|..+++.-..+ .+.++.|+..|++|+..+.
T Consensus 47 k~eel~~~~~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 47 KLEELEELEAEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777776653332 3445567777777666554
No 263
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.37 E-value=1.4e+02 Score=21.90 Aligned_cols=29 Identities=28% Similarity=0.286 Sum_probs=17.1
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHh
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRE 149 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~ 149 (412)
+.+-.-+..=.+.|..++..|+.||+.|+
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455666667777777766665
No 264
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.25 E-value=2.8e+02 Score=29.89 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCCC--------CCCCChhhhhhHHHHHHHHHHHhHHHHH-------HHHHHhhccHHHHHHHHHHHH
Q 015162 100 KNIHRRKPVHSHSTQS--------PTPITETERNEFEAKIERLKKENSLLQL-------ELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 100 ~~I~Rr~~~~s~~~~~--------~~~~t~~e~~~l~~eI~~LK~d~~~L~~-------EL~rL~qqqq~l~~qvq~L~e 164 (412)
+.|.+++.-++..... -....+.++..|..++..|++....|.. .-.++++++-.|..+...|++
T Consensus 185 kriss~~~~nssg~ssn~~~tedl~~e~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEE 264 (502)
T KOG0982|consen 185 KRISSSSSFNSSGKSSNKLETEDLLVEGMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEE 264 (502)
T ss_pred hhhhhhhhcccccccccccchhhhhhhhhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-----------HHHHHHHHHHHHH
Q 015162 165 RLRYLE-----------NRQTQMIACLANL 183 (412)
Q Consensus 165 rL~~~e-----------~~Qq~mlsfL~~v 183 (412)
.++..+ .+++.|+..+.+.
T Consensus 265 q~reqElraeE~l~Ee~rrhrEil~k~eRe 294 (502)
T KOG0982|consen 265 QRREQELRAEESLSEEERRHREILIKKERE 294 (502)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
No 265
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=25.23 E-value=1.4e+02 Score=26.66 Aligned_cols=51 Identities=12% Similarity=0.287 Sum_probs=28.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHH----HHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEY----HVQSVRERLRYLENRQ 173 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~----qvq~L~erL~~~e~~Q 173 (412)
|...+.+++..++.+..+|..++....+.++.++. =|+.|.+++..+++..
T Consensus 7 Ei~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkDisdkIdkCeC~K 61 (121)
T PF03310_consen 7 EISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKDISDKIDKCECNK 61 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHT-TTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 44455666666666766676666655554555553 2555666666666543
No 266
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.23 E-value=3.8e+02 Score=21.84 Aligned_cols=52 Identities=13% Similarity=0.309 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRR---ESGNHEFEYHVQSVRERLRYLENRQTQMIACL 180 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL---~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL 180 (412)
..+...+..||+.......-|..+ ....+.-+.+|+.|++++. +++.++..+
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~----~k~~~L~~~ 78 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIR----KKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 345566667777666666666653 3334444556667777665 444455443
No 267
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=25.14 E-value=2.3e+02 Score=24.41 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
..+.+++..|-...+.|...-++=-|-.+.++.+|..|+.+++..|.-.+.++
T Consensus 43 rqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~ 95 (101)
T PF12308_consen 43 RQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLS 95 (101)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhh
Confidence 44566677776666666665555444446677788888888877776665555
No 268
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=25.05 E-value=1.6e+02 Score=27.17 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=14.1
Q ss_pred CCCChhhhhhHHHHHHHHHH
Q 015162 117 TPITETERNEFEAKIERLKK 136 (412)
Q Consensus 117 ~~~t~~e~~~l~~eI~~LK~ 136 (412)
..+|......|++|++.|+.
T Consensus 29 ~~lT~~G~~~L~~El~~L~~ 48 (160)
T PRK06342 29 NLVTEAGLKALEDQLAQARA 48 (160)
T ss_pred ceECHHHHHHHHHHHHHHHH
Confidence 45777777777777777763
No 269
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.00 E-value=1.8e+02 Score=24.89 Aligned_cols=24 Identities=4% Similarity=0.091 Sum_probs=8.9
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHH
Q 015162 141 LQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 141 L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
+..++..++++++.++.+.+.|++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 270
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.97 E-value=4.3e+02 Score=24.43 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
....++..|+.++..|..+..+-++.....+.++..+++
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed 85 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELED 85 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577778888887777776655554444444444443
No 271
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=24.78 E-value=2e+02 Score=24.64 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+++-++.|++....|...+..+.+....+..++..+.++++
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777666666666666666554
No 272
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.75 E-value=2.4e+02 Score=26.08 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=9.7
Q ss_pred hhhhcccccccccc
Q 015162 66 SFVRQLNTYGFRKI 79 (412)
Q Consensus 66 SFvRQLN~YGF~Kv 79 (412)
.||++|..-||..-
T Consensus 6 ~~v~~Le~~Gft~~ 19 (177)
T PF07798_consen 6 KFVKRLEAAGFTEE 19 (177)
T ss_pred HHHHHHHHCCCCHH
Confidence 47777777777554
No 273
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.74 E-value=2.2e+02 Score=30.19 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESG-NHEFEYHVQSVRERLRYLE-NRQTQMIA 178 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qq-qq~l~~qvq~L~erL~~~e-~~Qq~mls 178 (412)
..||..||++...+..++..+-.+ ...+|.-|.....|+..+| +.||+.+.
T Consensus 275 q~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q 327 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQ 327 (395)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhh
No 274
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.59 E-value=1.8e+02 Score=28.94 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
++-.|+..++.++..|..+|..+..+|+.|+.-+-.++.++..
T Consensus 117 ~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 117 GLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777777777777777777777777777777776543
No 275
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=24.56 E-value=2.1e+02 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
...++.+++.|.+-...|...|.+|-+....+.++++.+..+..
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999999999988888888888877654
No 276
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=24.43 E-value=3.5e+02 Score=25.09 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhhh
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHS 201 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q~~~~~~ 201 (412)
.|...+..+++.+|.+......++.+|.........++..+............+=.--=++-++ .-+.+++..+..-
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ---~~L~~~re~E~qL 103 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQ---VRLAMLREREKQL 103 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q ss_pred cccc
Q 015162 202 KKRR 205 (412)
Q Consensus 202 kKRR 205 (412)
++||
T Consensus 104 r~rR 107 (159)
T PF05384_consen 104 RERR 107 (159)
T ss_pred HHHH
No 277
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=24.38 E-value=3.6e+02 Score=28.40 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
...++.+++.++-+...|..-+.+ |+.++..+-++++..-+.+-.|+.-+...+
T Consensus 332 ~a~~qad~q~~~ad~~~Lq~iier-------lkeelk~e~e~~qe~me~ifamLqavgdtl 385 (400)
T COG5613 332 AAQLQADSQLAAADVQNLQRIIER-------LKEELKLELEKAQEEMENIFAMLQAVGDTL 385 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445455555455444444 445555555555555555556665555533
No 278
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.31 E-value=1.5e+02 Score=32.98 Aligned_cols=13 Identities=15% Similarity=-0.048 Sum_probs=9.3
Q ss_pred CCchHHHhhhhcC
Q 015162 344 RANDQFWEQFLTE 356 (412)
Q Consensus 344 ~~ND~FWEqFLte 356 (412)
.+.|.|--||+-+
T Consensus 375 a~qds~i~qv~c~ 387 (907)
T KOG2264|consen 375 AVQDSPIVQVKCS 387 (907)
T ss_pred ccccCceEEEEEe
Confidence 5678887777754
No 279
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=24.08 E-value=31 Score=30.01 Aligned_cols=38 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 136 KENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACL 180 (412)
Q Consensus 136 ~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL 180 (412)
.....|..++.+++..|..+.++ |..++.+|..+-..|
T Consensus 57 ~~I~~L~~~v~~~~~~Q~~ld~~-------L~~ie~qQ~eLe~~L 94 (116)
T PF05064_consen 57 EKISKLYSEVQKAESEQKRLDQE-------LDFIEAQQKELEELL 94 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34444555555555544444444 333444554444443
No 280
>PF15556 Zwint: ZW10 interactor
Probab=23.97 E-value=5.1e+02 Score=25.33 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFE-YHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~-~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
..+.+-++.|+..+...+..+..-+.+++.-+ ..++.|.+....+..+|.....-|.++.+
T Consensus 101 ~qLqeA~eqlqaKKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~q 162 (252)
T PF15556_consen 101 TQLQEALEQLQAKKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQ 162 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777666666555444433332 34555555444444444444444444433
No 281
>KOG3805 consensus ERG and related ETS transcription factors [Transcription]
Probab=23.95 E-value=78 Score=32.53 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=40.4
Q ss_pred hHHHHHHhhcCCC-CCCceEEcC-CCCeEEEeCCchhhhhcc-ccccCCCCchhhhhcccccc
Q 015162 16 FLIKTYEMVDDPL-TNSLVSWSQ-SGGSFIVWNPPDFAKDLL-PLYFKHNNFSSFVRQLNTYG 75 (412)
Q Consensus 16 Fl~KLy~mv~d~~-~~~iI~W~~-~G~sFiI~d~~~F~~~vL-p~~Fkh~nfsSFvRQLN~YG 75 (412)
.-.-|.++|..|. +..+|+|-+ +-..|-|.+...+++.-- -|.=+.-||.-.-|-|..||
T Consensus 275 LwQFLkELL~sP~~~~~~IrWVDkdKGiFkiess~~lArlWG~RKNR~~MnYdKlsRslRqYy 337 (361)
T KOG3805|consen 275 LWQFLKELLYSPEQMGSCIRWVDKDKGIFKIESSEKLARLWGIRKNRKAMNYDKLSRSLRQYY 337 (361)
T ss_pred HHHHHHHHHhChhhhchheEeeccCCceEEeecHHHHHHHhhhhcccccccHHHHHHHHHHHh
Confidence 3344667788887 899999965 667788888855554311 12234557777888887776
No 282
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=23.89 E-value=3.9e+02 Score=24.39 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=2.5
Q ss_pred HHHHHHh
Q 015162 143 LELRRRE 149 (412)
Q Consensus 143 ~EL~rL~ 149 (412)
.||.+|+
T Consensus 63 ~eL~~Lk 69 (177)
T PF13870_consen 63 KELLKLK 69 (177)
T ss_pred HHHHHHH
Confidence 3333333
No 283
>COG3166 PilN Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.71 E-value=2.1e+02 Score=27.64 Aligned_cols=13 Identities=38% Similarity=0.537 Sum_probs=6.1
Q ss_pred HHHHHHHHHhcCC
Q 015162 175 QMIACLANLLKKP 187 (412)
Q Consensus 175 ~mlsfL~~vlq~p 187 (412)
.++.-|+.++..-
T Consensus 103 ~~le~L~~~lP~~ 115 (206)
T COG3166 103 VLLEQLANLLPES 115 (206)
T ss_pred HHHHHHHHhCCCc
Confidence 3455555544433
No 284
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.53 E-value=3.9e+02 Score=27.04 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 015162 135 KKENSLLQLELRRRESGNHEFEYHVQSVRER 165 (412)
Q Consensus 135 K~d~~~L~~EL~rL~qqqq~l~~qvq~L~er 165 (412)
+.....+..++..++.+...++.++..++++
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 285
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=23.43 E-value=1.9e+02 Score=29.86 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=8.3
Q ss_pred ccccccccccccccc
Q 015162 84 WEFANEEFIRGQRHL 98 (412)
Q Consensus 84 ~eF~h~~F~Rg~~~l 98 (412)
|.|--.-|.....+|
T Consensus 85 ~~~iKsvFSne~qdl 99 (323)
T PF08537_consen 85 WSSIKSVFSNEEQDL 99 (323)
T ss_pred HHHHHHHhCccHHHH
Confidence 555555555555554
No 286
>PRK14144 heat shock protein GrpE; Provisional
Probab=23.42 E-value=4.3e+02 Score=25.41 Aligned_cols=37 Identities=5% Similarity=-0.040 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHV 159 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qv 159 (412)
+...+..+++.|+.+...|...+.|+.-+.+++..++
T Consensus 46 ~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~ 82 (199)
T PRK14144 46 SYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRM 82 (199)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666555444444443
No 287
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.29 E-value=2.4e+02 Score=27.08 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=9.9
Q ss_pred eEEcCC-CCeEEEeCCchhhhh
Q 015162 33 VSWSQS-GGSFIVWNPPDFAKD 53 (412)
Q Consensus 33 I~W~~~-G~sFiI~d~~~F~~~ 53 (412)
|.-..+ |. +..|...|.+.
T Consensus 125 I~~~~~~G~--L~iD~~kl~~A 144 (239)
T PF07195_consen 125 ISTDRDNGT--LSIDETKLDKA 144 (239)
T ss_pred eeecCCCCe--EEEeHHHHHHH
Confidence 444444 32 44566666664
No 288
>PRK10093 primosomal replication protein N''; Provisional
Probab=23.25 E-value=3.3e+02 Score=25.64 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIAC 179 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsf 179 (412)
+.++++-.+..|-+|.+.....-..+. +++.+..++..++.||..|.+--.+|=.-
T Consensus 110 qHQd~ERRL~~Mv~dre~~L~~a~~~~-~qq~lq~el~alegRL~RCrqAl~~IE~~ 165 (171)
T PRK10093 110 QHQEFERRLLEMVAERRARLARATDLV-EQQTLHREVEAYEGRLARCRHALEKIENV 165 (171)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888777666555543 45778899999999999776654444433
No 289
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=23.16 E-value=3e+02 Score=30.14 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLK 185 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq 185 (412)
..+++.|......+...+......+..+..++..+.+++..++..|..|...|..+-+
T Consensus 354 ekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 354 EKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443444443333344445555666666666666666666666655433
No 290
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=23.13 E-value=95 Score=24.30 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=10.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhc
Q 015162 129 AKIERLKKENSLLQLELRRRESG 151 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qq 151 (412)
+|++.||..+..|..+...|+.+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444444433
No 291
>PRK10698 phage shock protein PspA; Provisional
Probab=23.06 E-value=3.9e+02 Score=25.79 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 139 SLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACL 180 (412)
Q Consensus 139 ~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL 180 (412)
..|..++...+.....|..++..|+.+|..++.++..|+...
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555566666666666666666665443
No 292
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=22.94 E-value=2.4e+02 Score=29.63 Aligned_cols=41 Identities=15% Similarity=0.286 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRE 164 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~e 164 (412)
...+...+..|++.+..|..+...++.++..++.++..+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (398)
T PTZ00454 17 ERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKE 57 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555444444444444433
No 293
>PRK08724 fliD flagellar capping protein; Validated
Probab=22.91 E-value=3.4e+02 Score=30.84 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
...|..++.++..++..++.+|..+++||..+
T Consensus 619 ~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~Q 650 (673)
T PRK08724 619 EKSLREQNYRLNDDQVALDRRMESLEKRTHAK 650 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666666533
No 294
>PRK14147 heat shock protein GrpE; Provisional
Probab=22.88 E-value=4e+02 Score=24.88 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+...|+.+...|..++..++.+...+..++...+.|+.
T Consensus 19 ~~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~ 56 (172)
T PRK14147 19 ETDPLKAEVESLRSEIALVKADALRERADLENQRKRIA 56 (172)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777777777655
No 295
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.78 E-value=4.5e+02 Score=21.98 Aligned_cols=47 Identities=23% Similarity=0.417 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRE---SGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~---qqqq~l~~qvq~L~erL~~~ 169 (412)
|.+++++.|...+++.+.+...|.+-+ +....++.++..+.+++...
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~ 55 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENN 55 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhcc
Confidence 455667777777777776666654311 12334444444444444333
No 296
>PRK14144 heat shock protein GrpE; Provisional
Probab=22.74 E-value=5.4e+02 Score=24.73 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
+.++..++.+...|..++..++.+...+...+...+.|...
T Consensus 44 ~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~k 84 (199)
T PRK14144 44 HPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMER 84 (199)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888889999999999999888888899999888763
No 297
>PHA02047 phage lambda Rz1-like protein
Probab=22.73 E-value=3.3e+02 Score=23.49 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRER 165 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~er 165 (412)
.|..+|..++.+...+++++..|+.|
T Consensus 38 ~la~qLE~a~~r~~~~Q~~V~~l~~k 63 (101)
T PHA02047 38 RQTARLEALEVRYATLQRHVQAVEAR 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455556666655
No 298
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=22.72 E-value=4.5e+02 Score=28.49 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=40.3
Q ss_pred HHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhhh
Q 015162 134 LKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQ 196 (412)
Q Consensus 134 LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~f~~~L~q~ 196 (412)
|..-......+|..+-.+...++.+-..|..+|.........+-.|+..++=.|.++..++..
T Consensus 33 le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I~~~ 95 (508)
T PF04129_consen 33 LEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSICEG 95 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhHhcC
Confidence 333333444444444444455555566666667777777888888999988888887776653
No 299
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.65 E-value=3.8e+02 Score=25.65 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
...+..+|+.|+.+...|...+.|+.-+.+++..++..=++.+.
T Consensus 35 ~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~ 78 (194)
T PRK14153 35 DSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENR 78 (194)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888877766555443
No 300
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=22.59 E-value=3.4e+02 Score=22.75 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
+...+..+++.|+.+...+..+++.++..-+....+-..-.+||..+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34456667777777777777777777666666666666666666543
No 301
>PRK14151 heat shock protein GrpE; Provisional
Probab=22.35 E-value=4.4e+02 Score=24.72 Aligned_cols=35 Identities=9% Similarity=0.184 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQ 160 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq 160 (412)
.+..+|+.|+.+...+...+.|++-+.+++..++.
T Consensus 24 ~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 24 DLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555444444433
No 302
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.35 E-value=3.4e+02 Score=30.50 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL 183 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v 183 (412)
..+.+++.+|+.--..|..++..-+-..+.+-++...+++.....|.+++-+-.|+.+.
T Consensus 81 ~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~r~kii~~Fl~~f 139 (655)
T KOG3758|consen 81 DRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLELRKKIINAFLDNF 139 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667788888888888888888888888888999999999999999999999999874
No 303
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=22.34 E-value=2e+02 Score=32.14 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYL 169 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~ 169 (412)
.|..+++.|-.++..|..||...+|-...|+.++..|+|.|+..
T Consensus 326 DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 326 DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788888888777766666777777777665543
No 304
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=22.32 E-value=1.4e+02 Score=24.56 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=3.2
Q ss_pred HhHHHHHHH
Q 015162 137 ENSLLQLEL 145 (412)
Q Consensus 137 d~~~L~~EL 145 (412)
++..|..||
T Consensus 8 En~~Lk~ei 16 (76)
T PF07334_consen 8 ENARLKEEI 16 (76)
T ss_pred HHHHHHHHH
Confidence 333333333
No 305
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.30 E-value=4.4e+02 Score=21.70 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFE 156 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~ 156 (412)
++||++|+.-...|..+|.++-+-+..|+
T Consensus 18 ~eEI~rLn~lv~sLR~KLiKYt~LnkkLq 46 (76)
T PF11544_consen 18 QEEIDRLNILVGSLRGKLIKYTELNKKLQ 46 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555444333333
No 306
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=22.18 E-value=2.7e+02 Score=29.78 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=22.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhh
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRES 150 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~q 150 (412)
....++.+|.++|++...|..-|+|.+-
T Consensus 414 ~lv~~edeirrlkrdm~klkq~l~RN~g 441 (486)
T KOG2185|consen 414 ALVEYEDEIRRLKRDMLKLKQMLNRNKG 441 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3456788999999999999988888665
No 307
>PRK14148 heat shock protein GrpE; Provisional
Probab=22.07 E-value=5.2e+02 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.097 Sum_probs=35.6
Q ss_pred hhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 122 TERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 122 ~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+...+..+|+.|+.+...|...+.|++-+.+++..++..=++.+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~ 85 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR 85 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888889888888888888888888888887776665443
No 308
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=21.93 E-value=2.4e+02 Score=29.13 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q 015162 140 LLQLELRRRESGNHEFEYHVQSVRERLRYLEN 171 (412)
Q Consensus 140 ~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~ 171 (412)
.|..++..|+++...+..++...+++|.....
T Consensus 105 ~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~ 136 (355)
T PF09766_consen 105 RLEEQLKELEQRKKKLQQENKKKKKFLDSLPP 136 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444444444444444433
No 309
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=21.87 E-value=4.2e+02 Score=26.29 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG 188 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~p~ 188 (412)
...+.++...+..++..++...+.++.-+..+.+.+...-+..++++.-+.+++++-+
T Consensus 239 ~A~~~~~~~~~~A~~~~~~a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~ 296 (306)
T PF04888_consen 239 SADLQKEAEKLQADQMELQAMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQQSG 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444445555555555565556666677777777666544
No 310
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=21.63 E-value=5.7e+02 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRER 165 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~er 165 (412)
...+..+|..|+.+...++.|+.+.....+.++.++...+.|
T Consensus 88 verLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 88 VERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555545454444444444
No 311
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.61 E-value=3.6e+02 Score=26.79 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCchhhhhhh
Q 015162 153 HEFEYHVQSVRERLRYLE-NRQTQMIACLANLLKKPGFSSALNQ 195 (412)
Q Consensus 153 q~l~~qvq~L~erL~~~e-~~Qq~mlsfL~~vlq~p~f~~~L~q 195 (412)
..+..++...++++..+. +.-..|++||.+.+..+..+..|+.
T Consensus 165 e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~ 208 (248)
T cd07619 165 DALREEMEEAANRMEICRDQLSADMYSFVAKEIDYANYFQTLIE 208 (248)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666442 3446899999999999999888886
No 312
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=21.53 E-value=2.6e+02 Score=31.62 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 137 ENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 137 d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
....|..++.++..+...++.++..+++||..+-..-..+|+
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~ms 642 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVK 642 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777776644443333333
No 313
>PRK14127 cell division protein GpsB; Provisional
Probab=21.53 E-value=1.8e+02 Score=25.31 Aligned_cols=37 Identities=24% Similarity=0.138 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVR 163 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~ 163 (412)
+..+++.|.+++..|..++.+|+.+...++.++...+
T Consensus 35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445556666666666666666666666666655544
No 314
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=21.50 E-value=6.1e+02 Score=25.21 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQM 176 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~m 176 (412)
.+..++.++.+.++.....+-++.+..++.++..|+........+-.+|
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666666666555444444333333
No 315
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.48 E-value=3.3e+02 Score=25.95 Aligned_cols=40 Identities=10% Similarity=0.145 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 128 EAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 128 ~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
.+++..|+.++..|..+++.|++....++.++..|..-|.
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt 117 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALT 117 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567777777777888888888777777777777766543
No 316
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=21.46 E-value=5.7e+02 Score=23.10 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
++..|+.+.+.....+..++........++..|....+..++.|.++-.-+.+
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~ 72 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQ 72 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666667777777777666666666666544444
No 317
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.21 E-value=4.6e+02 Score=25.35 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQS 161 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~ 161 (412)
.+..+|+.|+.+...|...+.|++-+.+++..+++.
T Consensus 35 ~~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~k 70 (209)
T PRK14141 35 PEPDPLEALKAENAELKDRMLRLAAEMENLRKRTQR 70 (209)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777766665555555443
No 318
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.10 E-value=5.1e+02 Score=26.42 Aligned_cols=52 Identities=21% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
+.+..+.|.+.+..|..+|+--..+...++.|+...+..|...++..+.+-+
T Consensus 72 l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~Ks 123 (307)
T PF10481_consen 72 LMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKS 123 (307)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333334444444444444444444333333
No 319
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=21.08 E-value=3e+02 Score=23.45 Aligned_cols=69 Identities=12% Similarity=0.191 Sum_probs=36.7
Q ss_pred hhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchh
Q 015162 121 ETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANL-LKKPGFS 190 (412)
Q Consensus 121 ~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~v-lq~p~f~ 190 (412)
..++..+..+...--.+...|.++|....+.-..|..+|..+..--..-.... +|+.-..+. -.+|+|.
T Consensus 7 ~eqR~~Yk~eF~~~y~EYk~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey~~i~-~I~~eY~k~Kk~~p~y~ 76 (101)
T PF07303_consen 7 SEQRQRYKAEFNDDYDEYKELHAEVDAVSRRFQELDSELKRLPPGSQEYKRIA-QILQEYNKKKKRDPNYQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHH----HHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHH-HHHHHHHHHHhcCccHH
Confidence 34566666666665556666666666666655566666655555333333333 555555555 3566664
No 320
>PF15294 Leu_zip: Leucine zipper
Probab=21.07 E-value=3.1e+02 Score=27.77 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 127 FEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 127 l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
+..+|.+|+.++..|...|..++.+....-.+-..+...|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~ 171 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKE 171 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888776544444444444444433
No 321
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.05 E-value=1.6e+02 Score=28.75 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=9.1
Q ss_pred HHHHhhccHHHHHHHHHHHHHH
Q 015162 145 LRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 145 L~rL~qqqq~l~~qvq~L~erL 166 (412)
+..++++++.|+.|+..|+.++
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 322
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=21.03 E-value=5.6e+02 Score=26.14 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=10.3
Q ss_pred HhHHHHHHHHHHhhccHHHHHHHHHH
Q 015162 137 ENSLLQLELRRRESGNHEFEYHVQSV 162 (412)
Q Consensus 137 d~~~L~~EL~rL~qqqq~l~~qvq~L 162 (412)
++..|.-++..|+.....++..+..+
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~ 131 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQL 131 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333
No 323
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=21.00 E-value=2.4e+02 Score=24.67 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q 015162 124 RNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 124 ~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL 166 (412)
...++..++.|......|..++..++++...+..+++.+..+.
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 138 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEA 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4557788888888888888888888888888888888877653
No 324
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=20.98 E-value=6.1e+02 Score=25.84 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 138 NSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMI 177 (412)
Q Consensus 138 ~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~ml 177 (412)
......-|..+.++++.+|..|..|.++|+..-..+..++
T Consensus 47 ~~~~~~~l~~n~e~q~~lw~~i~el~~~L~~l~~er~~~v 86 (289)
T PF05149_consen 47 RKESEKFLQKNEEQQQELWREIQELERELQDLAEERREEV 86 (289)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555666666666666665555444443333
No 325
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.83 E-value=5.2e+02 Score=23.07 Aligned_cols=54 Identities=9% Similarity=0.172 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 126 EFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 126 ~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
.|.+-+..+-+....+...|..-| .+|.++++.|-.+|..+...++.|-.-+..
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tK---khLsqRId~vd~klDe~~ei~~~i~~eV~~ 93 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTK---KHLSQRIDRVDDKLDEQKEISKQIKDEVTE 93 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444432 234455555555555554444444444433
No 326
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.81 E-value=1.6e+02 Score=27.87 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=12.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhhc
Q 015162 130 KIERLKKENSLLQLELRRRESG 151 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qq 151 (412)
|++.|+.=.+++..||+.|+.|
T Consensus 146 EaeQLQsLR~avRqElqELE~Q 167 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELEFQ 167 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666665543
No 327
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=20.77 E-value=2.9e+02 Score=28.79 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=31.2
Q ss_pred HHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 130 KIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 130 eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+++.||.....+...|..-..++..+..++..++.-+..++..|+++-.-|.+
T Consensus 148 qVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 148 QVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666555555555555544443
No 328
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=20.64 E-value=4.9e+02 Score=24.12 Aligned_cols=31 Identities=6% Similarity=0.202 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 151 GNHEFEYHVQSVRERLRYLENRQTQMIACLA 181 (412)
Q Consensus 151 qqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~ 181 (412)
+++.+.+++..++.||..|.+-...|=..|.
T Consensus 139 ~~~~lq~ei~a~e~RL~RCr~Ai~~iE~~I~ 169 (173)
T PF07445_consen 139 EQQQLQQEILALEQRLQRCRQAIEKIEEQIQ 169 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999977766655554444
No 329
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=20.57 E-value=4.4e+02 Score=26.22 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=15.6
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 146 RRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 146 ~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
.++++....|+.+...|+.++..+++.-.++-..+.+
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333444444444444444444444444444444
No 330
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=20.51 E-value=6.8e+02 Score=23.63 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 125 NEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLAN 182 (412)
Q Consensus 125 ~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~ 182 (412)
+.++..+-.|-++......+...+- +++.+.+++...+.|+..|..--.+|-+.|++
T Consensus 116 qd~Errl~~m~~~r~l~l~q~s~~v-Eqq~lqqel~~~e~RlarCr~AlekiE~~l~~ 172 (175)
T COG3923 116 QDYERRLLAMVQDRRLQLAQQSDLV-EQQKLQQELEAYEQRLARCRHALEKIENRLAR 172 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666655555544343 45668889999999998887776777666654
No 331
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.46 E-value=2e+02 Score=35.24 Aligned_cols=54 Identities=24% Similarity=0.217 Sum_probs=33.4
Q ss_pred HHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015162 131 IERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLL 184 (412)
Q Consensus 131 I~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vl 184 (412)
...|.++...|.+-|.||-+-|+.+-.--..|.++..+|..+|.+|+..+.+++
T Consensus 1573 ~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~ 1626 (1634)
T PLN03223 1573 GDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKIL 1626 (1634)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhc
Confidence 566677777777777776655544443333455566667777777777666644
No 332
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=20.29 E-value=1.4e+02 Score=26.81 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=13.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHV 159 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qv 159 (412)
.+|..|+.+...|..++.++..+.+++..++
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~ 48 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRL 48 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444434333333
No 333
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.24 E-value=6.3e+02 Score=22.56 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=9.0
Q ss_pred HHHHhhccHHHHHHHHHHHHHH
Q 015162 145 LRRRESGNHEFEYHVQSVRERL 166 (412)
Q Consensus 145 L~rL~qqqq~l~~qvq~L~erL 166 (412)
|.+..+-++.+..++..+++-+
T Consensus 77 lDe~~ei~~~i~~eV~~v~~dv 98 (126)
T PF07889_consen 77 LDEQKEISKQIKDEVTEVREDV 98 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3333333344444444444433
No 334
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=20.18 E-value=3.8e+02 Score=30.71 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015162 137 ENSLLQLELRRRESGNHEFEYHVQSVRERLRYLENRQTQMIA 178 (412)
Q Consensus 137 d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~~e~~Qq~mls 178 (412)
++..|......++...+.++.+...|++-++.+..+.+.+++
T Consensus 56 e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 56 ENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444445555555555555555555555544443
No 335
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.10 E-value=4.3e+02 Score=28.11 Aligned_cols=70 Identities=9% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCCChhhhhhHHHHHHHHHHHhHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 015162 117 TPITETERNEFEAKIERLKKENSLLQLELRR-RESGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKK 186 (412)
Q Consensus 117 ~~~t~~e~~~l~~eI~~LK~d~~~L~~EL~r-L~qqqq~l~~qvq~L~erL~~~e~~Qq~mlsfL~~vlq~ 186 (412)
..+++.....|.+.++++|++.+.-..+..+ |.+-.+..-..|..|++-...|++.-.+=+.|+..||.+
T Consensus 172 sSvspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~ 242 (472)
T KOG2856|consen 172 SSVSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLK 242 (472)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777665544433322 222223333457777777777777777777888776653
No 336
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.09 E-value=6e+02 Score=25.00 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=10.8
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Q 015162 142 QLELRRRESGNHEFEYHVQSVRERLRYLE 170 (412)
Q Consensus 142 ~~EL~rL~qqqq~l~~qvq~L~erL~~~e 170 (412)
...++.|+.+...+..+...|+.+|..++
T Consensus 222 r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 222 RRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33333333333333333333333333333
No 337
>PRK14158 heat shock protein GrpE; Provisional
Probab=20.09 E-value=7e+02 Score=23.83 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Q 015162 123 ERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLR 167 (412)
Q Consensus 123 e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~ 167 (412)
+...++.+++.|+.+...|..++.|++-+.+++..++..=++.+.
T Consensus 41 ~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 41 RIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999998888888777666554
No 338
>PRK14151 heat shock protein GrpE; Provisional
Probab=20.04 E-value=5.7e+02 Score=23.94 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 015162 129 AKIERLKKENSLLQLELRRRESGNHEFEYHVQSVRERLRY 168 (412)
Q Consensus 129 ~eI~~LK~d~~~L~~EL~rL~qqqq~l~~qvq~L~erL~~ 168 (412)
.....|+.+...|..++..++.+...+..++...+.|...
T Consensus 20 ~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~k 59 (176)
T PRK14151 20 AAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQ 59 (176)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888888888888888888887653
No 339
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.01 E-value=5.6e+02 Score=23.95 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=24.5
Q ss_pred CCChhhhhhHHHHHHHHHHHhHHHHHHHHHHhhccHHHHHH
Q 015162 118 PITETERNEFEAKIERLKKENSLLQLELRRRESGNHEFEYH 158 (412)
Q Consensus 118 ~~t~~e~~~l~~eI~~LK~d~~~L~~EL~rL~qqqq~l~~q 158 (412)
.+++.|+..+..||.++..++..|.+-|..-+.....|...
T Consensus 25 ~LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 25 GLSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45666666666666666666666665555555455555544
Done!