BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015164
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O14197|YDQ4_SCHPO Uncharacterized transporter C5D6.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC5D6.04 PE=3 SV=1
Length = 452
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 83/410 (20%), Positives = 171/410 (41%), Gaps = 36/410 (8%)
Query: 18 LLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPF 77
+++ ALG Y+ L L DA+K I++L Y F P LV + N + + ++ L +P
Sbjct: 26 VIVIALGGYV-LAKKGFLPRDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLLPV 84
Query: 78 NVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGS---- 133
+I ++ +++ + R R C N ++PL ++ ++
Sbjct: 85 FYVIISAASILISFLLAKLFRLTPRQRNFATACITFQNSNSLPLALVSSLATTVKDLLWD 144
Query: 134 --PFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIV--------------RASSTGISR 177
P +PD + G+ Y+ + +G WSY Y I+ R+ S
Sbjct: 145 KIPDDTPDKVASRGIMYLLIFSQLGQALRWSYGYRILLSPNQPEDPLPIGNRSWSHSDVN 204
Query: 178 ESRTIDEPFSKSVADGSISGTGSCSE--PLLSSKEFLTPADQLALPCTISEVKGSYSMKQ 235
E + S + DG + + +E + + ++ D + + + EV G +
Sbjct: 205 EEEIQNLLASSANVDG-VQNSVQANEGSTVQTDSSAISKNDNVQVETSNEEVGGFGAASS 263
Query: 236 QVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLR-VIQDSASLIGDGA 294
++ F + L F+P I +VP +++ + + + I + G A
Sbjct: 264 KISKFI--VLLLDFFSPPLYSLFIALFIAVVPPLQRFFFEEGSFVEGSITSGIRMAGQVA 321
Query: 295 IPTVTLVVGGNLLRGLRGS----GIQKS----IVFGIVVARYVALPLVGIVIVKGAVRFG 346
+P + +V+G +L + + ++K+ ++ ++ R V +PL + F
Sbjct: 322 VPMILVVLGASLATDISKTEPTQEVRKNNDTRVIIVCLLGRMVVVPLALLPAFSLLSYFS 381
Query: 347 FVCS-DDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYAL 395
+ + DD ++ ++ L P A+ + I QL G E EC+ ++ W+YA+
Sbjct: 382 EISTVDDPVFVVVIFLLVGSPTAIQLTQICQLNGVFERECAKVLWWSYAV 431
>sp|P38355|YB8B_YEAST Uncharacterized transporter YBR287W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YBR287W PE=1 SV=1
Length = 427
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 267 PLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLR---GSGIQKSIVFGI 323
PL R+ + D ++ + +G +IP + +V+G NL + ++ G
Sbjct: 272 PLQRELFMEDGFINNTFAEAVTQLGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGS 331
Query: 324 VVARYVALPLVGIVIVKGAVRFGFVCS-DDLLYQFILLLQFAMPPAMNIGTITQLFGAGE 382
++ R + + I+ AV++ V DD ++ + L PPA+ + ITQL E
Sbjct: 332 IIGRMILPSCFLLPIIAIAVKYINVSILDDPIFLVVGFLLTVSPPAIQLTQITQLNEFFE 391
Query: 383 SECSVIMLWTYALASVSITL 402
+E + I+ W YA+ S+ +++
Sbjct: 392 AEMADILFWGYAVLSLPVSI 411
>sp|Q99252|ECM3_YEAST Protein ECM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=ECM3 PE=1 SV=1
Length = 613
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 9 ASSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYES 68
AS P++K+ LI +G L +NIL A + I+++V + P L + + I
Sbjct: 12 ASVRPIIKIYLIIGVG--FGLCKMNILTVQATRSISDIVLTILLPCLSFNKIVANIEDND 69
Query: 69 MLKLWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPL 121
+ + + +I F G +IV P +RG I+ N+ ++P+
Sbjct: 70 IKDVGIICLTSVILFATGLGFAFIVRSVLPVPKRWRGGILAGGMFPNISDLPI 122
>sp|Q87FD5|PTYBC_VIBPA PTS system N-acetylmuramic acid-specific EIIBC component OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=murP PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 18/159 (11%)
Query: 183 DEPFSKSVADGSISGTGSCSEPLLSSKEFLTPAD-------QLALPCTISEVKGSYSMKQ 235
DE F + G L+ S LT D Q L +E K KQ
Sbjct: 60 DEQFQIILGPGKAQQAAEMMNQLIDS---LTSGDSEEPDMPQQDLSAVAAEQKKQMKSKQ 116
Query: 236 Q--VKLFFAKINLKSMFAPSTIGALA-GFIIGLVPLIRKSMIGDSAPLRVIQD---SASL 289
V+ F +K ++F P G +A G ++G L+ + + D P + + D +
Sbjct: 117 TSAVQRFLSK--FATIFTPLIPGFIAAGLLLGFATLLEQMFVLDQTPSQFMLDLIAYMKV 174
Query: 290 IGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARY 328
G G +++++G N + GSG+ +I+ + V Y
Sbjct: 175 FGKGLFAFLSILIGYNAQQAFGGSGVNGAILASLFVLGY 213
>sp|P54072|YL152_YEAST Uncharacterized transporter YLR152C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YLR152C PE=1 SV=1
Length = 576
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 39/221 (17%)
Query: 168 VRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEV 227
+R +SR +E S++ + G++ TG E + + CT
Sbjct: 323 IRQGELDLSRPLSLTEEVGSRNASIGNVH-TGYTDESSIEEEN-----------CTNMAT 370
Query: 228 KGSYSMKQQVKLFFAKINLK-------SMFAPSTIGALAGFIIGLVPLIRKSMIG----- 275
G + + F + NLK + P+++GA+ G I L+P ++ +
Sbjct: 371 DG----RGSLSFFIERHNLKWLQYFIINCLRPASLGAILGIICALIPWVKACFVTTYVHV 426
Query: 276 ----DSAP-LRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGS---GIQKSIVFGIVVAR 327
D P L + D IG+ +P L++GG L R S G KS + + R
Sbjct: 427 HKAPDGEPVLNFLMDFTEYIGNACVPLGLLLLGGTLARLEIKSLPPGFIKSALL-MTCFR 485
Query: 328 YVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPA 368
+ +P++G++ V ++ D + +F ++L ++MP A
Sbjct: 486 LIVIPIIGVLWVNKLYSIDWL--DTGIGKFDMILTWSMPSA 524
>sp|Q7MBS2|PTYBC_VIBVY PTS system N-acetylmuramic acid-specific EIIBC component OS=Vibrio
vulnificus (strain YJ016) GN=murP PE=3 SV=1
Length = 486
Score = 32.3 bits (72), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 14/158 (8%)
Query: 183 DEPFSKSVADGSISGTGSCSEPLLSS------KEFLTPADQLALPCTISEVKGSYSMKQQ 236
DE F + G L+ S +E +D L +E K KQ
Sbjct: 60 DEQFQIILGPGKAQQAAELMNKLIESVINGDVQEQAMASDTNDLSSVAAEQKKQMKSKQT 119
Query: 237 --VKLFFAKINLKSMFAPSTIGALA-GFIIGLVPLIRKSMIGDSAPLRVIQD---SASLI 290
V+ F +K ++F P G +A G ++G L+ + + + P + I D +
Sbjct: 120 SAVQRFLSK--FATIFTPLIPGFIAAGLLLGFATLLEQMFVLEQTPSQFILDLIAYMKVF 177
Query: 291 GDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARY 328
G G +++++G N + GSG+ +I+ + V Y
Sbjct: 178 GKGLFAFLSILIGYNAQQAFGGSGVNGAILASLFVLGY 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,570,750
Number of Sequences: 539616
Number of extensions: 5921294
Number of successful extensions: 18665
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 18657
Number of HSP's gapped (non-prelim): 17
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)