Query 015164
Match_columns 412
No_of_seqs 113 out of 256
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:43:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 1E-106 3E-111 784.1 23.4 402 1-412 2-408 (408)
2 PF03547 Mem_trans: Membrane t 100.0 3.5E-51 7.6E-56 415.0 28.4 368 10-404 2-385 (385)
3 COG0679 Predicted permeases [G 100.0 4.5E-28 9.8E-33 240.1 22.4 308 7-409 2-309 (311)
4 TIGR00946 2a69 he Auxin Efflux 100.0 8.9E-27 1.9E-31 231.7 21.8 316 6-406 2-319 (321)
5 PRK09903 putative transporter 99.9 3.8E-24 8.2E-29 212.4 22.9 301 13-406 8-309 (314)
6 TIGR00841 bass bile acid trans 96.9 0.0029 6.4E-08 62.2 8.2 108 295-409 14-122 (286)
7 TIGR00841 bass bile acid trans 94.4 0.48 1E-05 46.6 11.7 135 10-163 137-275 (286)
8 COG0385 Predicted Na+-dependen 91.2 0.99 2.1E-05 45.1 8.5 111 292-409 41-152 (319)
9 PF01758 SBF: Sodium Bile acid 89.7 2 4.3E-05 39.4 8.7 108 295-408 4-112 (187)
10 PF13593 DUF4137: SBF-like CPA 88.1 3.1 6.7E-05 41.6 9.4 142 254-408 4-147 (313)
11 COG0385 Predicted Na+-dependen 84.9 2.6 5.7E-05 42.1 6.8 44 74-117 224-267 (319)
12 TIGR00832 acr3 arsenical-resis 83.8 1.6 3.5E-05 43.9 4.9 101 15-116 182-289 (328)
13 TIGR00832 acr3 arsenical-resis 72.9 29 0.00064 34.8 10.1 137 254-408 13-157 (328)
14 PF05684 DUF819: Protein of un 62.0 11 0.00024 38.7 4.7 87 15-104 26-116 (378)
15 PRK11339 abgT putative aminobe 51.4 65 0.0014 34.5 8.3 79 13-93 89-173 (508)
16 PF03806 ABG_transport: AbgT p 48.3 2.4E+02 0.0052 30.2 11.8 80 13-94 79-164 (502)
17 PF03616 Glt_symporter: Sodium 42.4 2.1E+02 0.0045 29.3 10.1 108 55-172 72-187 (368)
18 PRK12460 2-keto-3-deoxyglucona 40.8 74 0.0016 31.9 6.3 104 13-125 165-269 (312)
19 KOG2262 Sexual differentiation 39.8 8.4 0.00018 42.1 -0.4 101 58-170 432-534 (761)
20 TIGR00783 ccs citrate carrier 38.2 47 0.001 33.8 4.6 84 17-103 207-296 (347)
21 PRK11677 hypothetical protein; 37.7 35 0.00076 29.9 3.2 25 73-100 3-27 (134)
22 TIGR00819 ydaH p-Aminobenzoyl- 37.7 3.4E+02 0.0073 29.2 11.1 106 11-129 84-196 (513)
23 PF03390 2HCT: 2-hydroxycarbox 35.9 4.6E+02 0.0099 27.5 11.4 132 12-153 51-199 (414)
24 TIGR03802 Asp_Ala_antiprt aspa 35.1 43 0.00094 36.3 4.1 150 10-171 8-187 (562)
25 PF03812 KdgT: 2-keto-3-deoxyg 33.6 1.6E+02 0.0034 29.6 7.3 106 11-125 168-275 (314)
26 PF05684 DUF819: Protein of un 32.4 1.4E+02 0.0031 30.6 7.1 103 14-127 240-343 (378)
27 PF10951 DUF2776: Protein of u 30.6 5.6E+02 0.012 25.6 10.3 150 10-172 10-180 (347)
28 PF06295 DUF1043: Protein of u 30.5 49 0.0011 28.6 2.9 22 79-100 2-23 (128)
29 PF06305 DUF1049: Protein of u 29.8 75 0.0016 23.6 3.5 26 73-98 18-43 (68)
30 COG3763 Uncharacterized protei 29.7 83 0.0018 24.4 3.6 25 71-95 2-26 (71)
31 COG2978 AbgT Putative p-aminob 28.4 1.6E+02 0.0035 31.2 6.6 72 11-86 89-161 (516)
32 PRK04972 putative transporter; 27.5 87 0.0019 33.9 4.8 98 11-120 11-133 (558)
33 PF13593 DUF4137: SBF-like CPA 27.5 1.6E+02 0.0034 29.4 6.3 96 12-112 162-265 (313)
34 COG2323 Predicted membrane pro 27.1 1.4E+02 0.0031 28.4 5.6 81 14-101 8-88 (224)
35 PRK03818 putative transporter; 25.3 1.2E+02 0.0026 32.9 5.3 92 73-171 91-185 (552)
36 TIGR00939 2a57 Equilibrative N 24.9 8E+02 0.017 25.5 17.6 21 319-339 339-359 (437)
37 PF03601 Cons_hypoth698: Conse 24.8 62 0.0013 32.3 2.9 86 16-105 28-116 (305)
38 PRK05326 potassium/proton anti 23.9 2.2E+02 0.0048 30.7 7.1 98 21-124 251-350 (562)
39 TIGR00410 lacE PTS system, lac 23.8 3.1E+02 0.0066 28.7 7.9 74 323-408 339-412 (423)
40 TIGR00359 cello_pts_IIC phosph 23.8 3.1E+02 0.0066 28.7 7.9 74 323-408 339-412 (423)
41 COG0475 KefB Kef-type K+ trans 23.2 1.8E+02 0.0038 30.0 5.9 79 21-102 250-329 (397)
42 COG1823 Predicted Na+/dicarbox 22.9 3.4E+02 0.0073 28.2 7.5 63 254-346 35-97 (458)
43 PF12534 DUF3733: Leucine-rich 22.6 82 0.0018 24.1 2.5 44 61-104 12-60 (65)
44 PRK05274 2-keto-3-deoxyglucona 22.5 1.9E+02 0.0042 29.1 5.9 101 15-123 174-275 (326)
45 PRK01844 hypothetical protein; 22.4 1.3E+02 0.0029 23.4 3.6 24 72-95 3-26 (72)
46 PF06376 DUF1070: Protein of u 21.6 1E+02 0.0023 20.5 2.5 21 139-159 11-31 (34)
47 COG3493 CitS Na+/citrate sympo 21.4 3.2E+02 0.007 28.3 7.1 101 21-126 83-194 (438)
48 TIGR03082 Gneg_AbrB_dup membra 20.1 1.7E+02 0.0037 25.8 4.5 47 55-101 55-105 (156)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.4e-106 Score=784.15 Aligned_cols=402 Identities=48% Similarity=0.895 Sum_probs=343.0
Q ss_pred CchhHHHHHHH--HHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHH
Q 015164 1 MGALDLFIASS--IPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFN 78 (412)
Q Consensus 1 m~~~~l~~~a~--~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~ 78 (412)
||+++++-.|. +|++||++++.+|+++|+++.|+|++|+||.+|++||++|+|||+|+|||+++|.|++.+||+||+|
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhH
Q 015164 79 VLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAI 158 (412)
Q Consensus 79 ~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i 158 (412)
+++++++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++|||++|.|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccccC-ccccC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCccccccchhhhH
Q 015164 159 YLWSYVYNIVRASSTG-ISRES--RTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQ 235 (412)
Q Consensus 159 ~~ws~g~~ll~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (412)
++|||+||++.+...+ .++.+ .-|..+++.+....+.+++++++.+.+.+++ +++++.. ..+.+.++
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~e--n~~~~~~--------g~~~~~~~ 231 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKE--NRNNQVV--------GREGKVKR 231 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccc--cCCCcee--------eccccceE
Confidence 9999999977765321 11111 0010000111000011111111112221111 1111110 01111122
Q ss_pred HHHHHHHHhhhhcccChhHHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCCCC
Q 015164 236 QVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGI 315 (412)
Q Consensus 236 ~~~~~~~~~~~~~~~~Pp~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~ 315 (412)
+.+....++.++++++||++|+++|+++|.|||||+++|++++|++++||+++++|+++|||++++||+||++|+++|.+
T Consensus 232 ~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~ 311 (408)
T KOG2722|consen 232 RSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSAL 311 (408)
T ss_pred EEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhccc
Confidence 12222233346999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 015164 316 QKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYAL 395 (412)
Q Consensus 316 ~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~ 395 (412)
+.+++++++++||+++|++|+++|..++|+|.++.|||+|+||++||+++|||||+++|||+||.+|+|||++|||+|++
T Consensus 312 ~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~v 391 (408)
T KOG2722|consen 312 KTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECSVILFWTYAV 391 (408)
T ss_pred CceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999996799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccC
Q 015164 396 ASVSITLWSTFFLWLVS 412 (412)
Q Consensus 396 ~~vslt~w~t~~l~~~~ 412 (412)
+.+++|+|+++|+|++.
T Consensus 392 a~l~ltvw~~~f~~lv~ 408 (408)
T KOG2722|consen 392 ASLSLTVWSVFFLWLVV 408 (408)
T ss_pred HHhhHHHHHHHHHHHhC
Confidence 99999999999999873
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.5e-51 Score=414.98 Aligned_cols=368 Identities=32% Similarity=0.488 Sum_probs=289.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHHHHH
Q 015164 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSIL 89 (412)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~ 89 (412)
++++++++++++++||+++ |.|+++++.+|.+|++++++|+|||+|++++++.+.+++.++|++++++.+.+++++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred cHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhhcccccc
Q 015164 90 GWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVR 169 (412)
Q Consensus 90 g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~ 169 (412)
++++.|++|.|+++|+.+..+|+|+|++++|+.++++++.+ +|.+|++++..++.++.|++|+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 80 GFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999643 88899999999999999999999888
Q ss_pred ccccCccccCCCCC--CCCCCCC-------CCCCC-C-CCC---CCCCCCCCCcccCCcc-ccCCCCCCcc-ccccchhh
Q 015164 170 ASSTGISRESRTID--EPFSKSV-------ADGSI-S-GTG---SCSEPLLSSKEFLTPA-DQLALPCTIS-EVKGSYSM 233 (412)
Q Consensus 170 ~~~~~~~~~~~~~~--~~~~~~~-------~~~~~-~-~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 233 (412)
...++.++++++++ ++.+.++ .++++ . .++ ++++.....++.++.. ++.+...+++ ....+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (385)
T PF03547_consen 147 SRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKS 226 (385)
T ss_pred ccccccccccccccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhh
Confidence 66543322111100 0000000 00000 0 000 0000000000000000 0000000000 00111111
Q ss_pred hHHHHHHHHHhhhhcccChhHHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCC
Q 015164 234 KQQVKLFFAKINLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGS 313 (412)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~Pp~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s 313 (412)
.+..++...+...+.++|||++|+++|++++++|++|+++++ ++++++++++|++++|++++++|++|+++++++
T Consensus 227 ~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~ 301 (385)
T PF03547_consen 227 SNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLGAAAVPLALFVLGASLARGPRKS 301 (385)
T ss_pred hhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Confidence 122222222222588999999999999999999999999886 899999999999999999999999999988877
Q ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHH
Q 015164 314 GIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTY 393 (412)
Q Consensus 314 ~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y 393 (412)
+.+.+.....++.|++++|++++++++.+. + |+....+++++.++|||++...+|+.||..+++++..++|+|
T Consensus 302 ~~~~~~~~~~~~~rlii~P~i~~~~~~~~~----l---~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~~~~~~~ 374 (385)
T PF03547_consen 302 ALGWKPSIIAVLVRLIILPLIGIGIVFLLG----L---DGDMARVLILQAAMPTAINSFVIASLYGLDEEEASSIVFWST 374 (385)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888888899999999999999998765 2 666788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 015164 394 ALASVSITLWS 404 (412)
Q Consensus 394 ~~~~vslt~w~ 404 (412)
+++++++++|+
T Consensus 375 ~~~~~~~~~~~ 385 (385)
T PF03547_consen 375 LLSIPTLPLWI 385 (385)
T ss_pred HHHHHHHHHHC
Confidence 99999999995
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.96 E-value=4.5e-28 Score=240.15 Aligned_cols=308 Identities=22% Similarity=0.287 Sum_probs=258.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHH
Q 015164 7 FIASSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVG 86 (412)
Q Consensus 7 ~~~a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig 86 (412)
++..+.++++++++.++||+++ |.|.++++..|.+|++++++++|||+|++++++-..++ +++..+++..+.....+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4667899999999999999999 99999999999999999999999999999999987766 88888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhhccc
Q 015164 87 SILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYN 166 (412)
Q Consensus 87 ~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ 166 (412)
.+..++..|.+|.++++++....+.+|+|++++++.+..++ | .++|++|.++|..+++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999997776544 3 4678899999999999999999987
Q ss_pred cccccccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCccccccchhhhHHHHHHHHHhhh
Q 015164 167 IVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKINL 246 (412)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (412)
.+...+.+. + .. .++.. .
T Consensus 146 ~l~~~~~~~----------------------------------------------------~--~~----~~~~~----~ 163 (311)
T COG0679 146 LLARSGGGT----------------------------------------------------N--KS----LLSVL----K 163 (311)
T ss_pred HHHHhcCCc----------------------------------------------------h--hH----HHHHH----H
Confidence 666442100 0 00 11111 1
Q ss_pred hcccChhHHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCCCCCcchhhhhHHH
Q 015164 247 KSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVA 326 (412)
Q Consensus 247 ~~~~~Pp~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~ 326 (412)
+-+.||+.+|.++|++..... .- .-.++.++++++|++++|+.++++|..|+. .+.++...+.+......
T Consensus 164 ~~~~nP~i~a~i~g~~~~~~~----i~-----lP~~~~~~~~~l~~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~ 233 (311)
T COG0679 164 KLLTNPLIIALILGLLLNLLG----IS-----LPAPLDTAVDLLASAASPLALIALGLSLAF-LKLKGSKPPIILIALSL 233 (311)
T ss_pred HHHhCcHHHHHHHHHHHHHcC----CC-----CcHHHHHHHHHHHHhhhhHHHHHHhhhcch-hhhccccchhHHHHHHH
Confidence 556899999999999988655 11 112899999999999999999999999988 55677778888888888
Q ss_pred HHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 015164 327 RYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITLWSTF 406 (412)
Q Consensus 327 RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~ 406 (412)
|+++.|++...+.+... + ++...-|+.++.++|+|.|--.+++-+|..++..+...+-+=..+.++++.|..+
T Consensus 234 kll~~Pl~~~~~~~~~~----l---~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 234 KLLLAPLVALLVAKLLG----L---SGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHHHHHHHHHHHHHcC----C---ChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999666443 3 4444589999999999999999999999998888888889999999999888877
Q ss_pred hhh
Q 015164 407 FLW 409 (412)
Q Consensus 407 ~l~ 409 (412)
+.+
T Consensus 307 l~~ 309 (311)
T COG0679 307 LLR 309 (311)
T ss_pred Hhc
Confidence 665
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.95 E-value=8.9e-27 Score=231.68 Aligned_cols=316 Identities=16% Similarity=0.141 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHH
Q 015164 6 LFIASSIPVLKVLLITALGSYL-ALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFL 84 (412)
Q Consensus 6 l~~~a~~pv~kVlli~~~G~~l-A~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ 84 (412)
.+|..+..++.++++.++||++ . |.|+++++..|.+|++++++.+|||+|+++++.-..++....+...+.....+.
T Consensus 2 ~~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T TIGR00946 2 ITYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS 79 (321)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999999 7 999999999999999999999999999999985333234444444455556667
Q ss_pred HHHHHHHHHHH-hcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhh
Q 015164 85 VGSILGWIVVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSY 163 (412)
Q Consensus 85 ig~~~g~l~~~-~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~ 163 (412)
..++++|++.| .+|.+++.++....+++++|++.+.+-+++++- |++. . .+..|...+.....+..|+.
T Consensus 80 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~-------G~~~--~-~~~~~~~~~~~~~~~~~~~~ 149 (321)
T TIGR00946 80 GSYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF-------GEEG--A-KILIAALFIDTGAVLMTIAL 149 (321)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHHh-------cccc--h-hhhHHHHHHHhccchhHHHH
Confidence 78899999998 889999999999999999999999999999884 3321 1 13567777777777789999
Q ss_pred ccccccccccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCccccccchhhhHHHHHHHHH
Q 015164 164 VYNIVRASSTGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAK 243 (412)
Q Consensus 164 g~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
|+-+.....++ ++ + +.++.++..+ +.+
T Consensus 150 ~~~~~~~~~~~------~~------------------------------~-----------~~~~~~~~~~----~~~-- 176 (321)
T TIGR00946 150 GLFLVSEDGAG------GE------------------------------G-----------SGESTRLMLI----FVW-- 176 (321)
T ss_pred HHHHhcccccc------cc------------------------------c-----------cchhHHHHHH----HHH--
Confidence 87443211000 00 0 0001111111 111
Q ss_pred hhhhcccChhHHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCCCCCcchhhhh
Q 015164 244 INLKSMFAPSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGI 323 (412)
Q Consensus 244 ~~~~~~~~Pp~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i 323 (412)
.+-+.||+.+|.++|+++...+. + .=.++.++++++|++++|+.++++|..+.. ++.+.+++.+...
T Consensus 177 --~~~~~nP~iia~i~Gl~~~~~~i-~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~ 243 (321)
T TIGR00946 177 --KKLIKFPPLWAPLLSVILSLVGF-K--------MPGLILKSISILSGATTPMALFSLGLALSP--RKIKLGVRDAILA 243 (321)
T ss_pred --HHHHhCCChHHHHHHHHHHHHhh-c--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhCh--hhhccChHHHHHH
Confidence 13457899999999999998752 1 115899999999999999999999999864 3333455778888
Q ss_pred HHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 015164 324 VVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITLW 403 (412)
Q Consensus 324 ~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~w 403 (412)
+..|+++.|++...+.+. ++. |+...-+++++.++|||.+-..+++-||..+++.+...+++-.++.+++++|
T Consensus 244 ~~~klil~P~i~~~~~~~------~~l-~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~ 316 (321)
T TIGR00946 244 LIVRFLVQPAVMAGISKL------IGL-RGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLF 316 (321)
T ss_pred HHHHHHHHHHHHHHHHHH------hCC-ChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999776653 234 7778899999999999999999999999999999999999999999999999
Q ss_pred HHh
Q 015164 404 STF 406 (412)
Q Consensus 404 ~t~ 406 (412)
+.+
T Consensus 317 ~~l 319 (321)
T TIGR00946 317 IIL 319 (321)
T ss_pred HHH
Confidence 865
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.93 E-value=3.8e-24 Score=212.36 Aligned_cols=301 Identities=15% Similarity=0.154 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHHHHHHHH
Q 015164 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (412)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (412)
.++-+.++.++||++. |+|+++++..|.+|++++++.+||++|+++.+. +.++..+-|.+.+...+.+...++++|+
T Consensus 8 ~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (314)
T PRK09903 8 DLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFSWF 84 (314)
T ss_pred HHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3555668889999999 999999999999999999999999999999864 5566553455667777888888888888
Q ss_pred HHH-hcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhhcccccccc
Q 015164 93 VVQ-FTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRAS 171 (412)
Q Consensus 93 ~~~-~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~ 171 (412)
+.| .+|-+++.++....+++++|++.+-+-+++++ ||++. . -|+.|..++ .+.+++.|++|.-+++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~--~-~~~~~a~~~-~~~~~~~~~~g~~~~~~~ 153 (314)
T PRK09903 85 GCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSV--S-TGLVVAIIS-IIVNAITIPIGLYLLNPS 153 (314)
T ss_pred HHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchh--h-hhhHHHHHH-HHHHHHHHHHHHHHHccc
Confidence 875 66777777778888889999999999999987 44331 1 145555544 357889999987666532
Q ss_pred ccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCCCccccccchhhhHHHHHHHHHhhhhcccC
Q 015164 172 STGISRESRTIDEPFSKSVADGSISGTGSCSEPLLSSKEFLTPADQLALPCTISEVKGSYSMKQQVKLFFAKINLKSMFA 251 (412)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (412)
+.. + + + ++..++.++ +-+.|
T Consensus 154 ~~~----~--~---------------------------------------------~-~~~~~~~l~--------~~~~n 173 (314)
T PRK09903 154 SGA----D--G---------------------------------------------K-KNSNLSALI--------SAAKE 173 (314)
T ss_pred ccc----c--c---------------------------------------------c-cchHHHHHH--------HHHhc
Confidence 100 0 0 0 000011121 33678
Q ss_pred hhHHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCCCCCcchhhhhHHHHHHHH
Q 015164 252 PSTIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARYVAL 331 (412)
Q Consensus 252 Pp~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~Rliil 331 (412)
|+.+|.++|+++.+.. = +.=.++.++++++|++++|+.++.+|++|++...+ .. +......+.|+++.
T Consensus 174 P~iia~~~gl~~~l~~--------i-~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~--~~-~~~~~~~~~Kli~~ 241 (314)
T PRK09903 174 PVVWAPVLATILVLVG--------V-KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFE--FS-AEIAYNTFLKLILM 241 (314)
T ss_pred hHHHHHHHHHHHHHcC--------C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--cc-HHHHHHHHHHHHHH
Confidence 9999999999976421 1 11159999999999999999999999999874322 22 34456678899999
Q ss_pred HHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 015164 332 PLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITLWSTF 406 (412)
Q Consensus 332 P~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~ 406 (412)
|++...+.... +- |+...=+++++.++|+|.+-..+++-||..++..+...+.+-.++++++|+|+.+
T Consensus 242 P~i~~~~~~~~------~l-~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 242 PLALLLVGMAC------HL-NSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred HHHHHHHHHHc------CC-CcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99886655432 33 6667779999999999999999999999888888999999999999999999875
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.94 E-value=0.0029 Score=62.24 Aligned_cols=108 Identities=16% Similarity=0.081 Sum_probs=87.8
Q ss_pred hhhhhhhcccccccC-CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHH
Q 015164 295 IPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGT 373 (412)
Q Consensus 295 VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~ 373 (412)
+..+++.+|.++... .++....++.+...++.|++++|++...+.+.. +. ||.+...+++..++|+|.+-..
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l-~~~~~~glvL~~~~P~~~~s~v 86 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KL-PPELAVGVLIVGCCPGGTASNV 86 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CC-CHHHHHHHHheeeCCCchHHHH
Confidence 677889999999752 222223556788888899999999998876533 33 8999999999999999999999
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015164 374 ITQLFGAGESECSVIMLWTYALASVSITLWSTFFLW 409 (412)
Q Consensus 374 itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~~l~ 409 (412)
+|+.+|...+-.+.....+=+.+++++|+|+.++..
T Consensus 87 ~t~~~~gn~~la~~~~~~stlls~vt~Pl~l~~~~~ 122 (286)
T TIGR00841 87 FTYLLKGDMALSISMTTCSTLLALGMMPLLLYIYAK 122 (286)
T ss_pred HHHHhCCCHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999997766667777789999999999999988764
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.45 E-value=0.48 Score=46.61 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCHHHHhh---ccchhheehhhhHHHHhhccccccccc-hhhhHHhHHHHHHHHH
Q 015164 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKH---INNLVFYVFNPALVASNLANTITYESM-LKLWFMPFNVLITFLV 85 (412)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~---ls~l~~~~FlP~LiFs~la~~lt~~~l-~~~w~ipv~~ll~~~i 85 (412)
..+ ..-+++-...|..+. +. .+ +.+|. ++.+... ++=++++.-++.+. +++ .+.|.+-+-.++...+
T Consensus 137 ~~~-~~~v~vPl~lG~~~r--~~--~p-~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 137 GLS-LVAVLIPVSIGMLVK--HK--LP-QIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHH-HHHHHHHHHHHHHHH--HH--hH-HHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHH
Confidence 344 677888899999877 33 12 22222 3333222 12234444443332 112 2234444456777899
Q ss_pred HHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhh
Q 015164 86 GSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSY 163 (412)
Q Consensus 86 g~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~ 163 (412)
|+.+||++.|.+|.+++.+.-+.-.++.+|++ +-+.+..+. |++ + ...-...|...+...+.++.+-+
T Consensus 208 ~~~~g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~~-~-~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FSP-E-VAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cCh-H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 555444332 332 1 23334567777777777665443
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=91.23 E-value=0.99 Score=45.10 Aligned_cols=111 Identities=16% Similarity=0.072 Sum_probs=83.2
Q ss_pred CcchhhhhhhcccccccCC-CCCCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHH
Q 015164 292 DGAIPTVTLVVGGNLLRGL-RGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMN 370 (412)
Q Consensus 292 ~a~VPl~llvLGa~L~~g~-~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~ 370 (412)
..++-++++..|.+|.+.- +..-.+||..+...+.-++++|++++++.+... - ||-..-=+++..|.|..++
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l-~~~l~~Gl~ll~~~Pggv~ 113 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------L-PPELAVGLLLLGCCPGGVA 113 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------C-CHHHHHhHHheeeCCCchh
Confidence 3456778889999997622 223356788888999999999999999887543 3 8888888899999999999
Q ss_pred HHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015164 371 IGTITQLFGAGESECSVIMLWTYALASVSITLWSTFFLW 409 (412)
Q Consensus 371 l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~~l~ 409 (412)
.-.+|++.+-.-.-+-..-.-+=+++++.+|+++..|+.
T Consensus 114 S~~~t~lAkGnValsV~~tsvStll~~f~tPllv~l~~~ 152 (319)
T COG0385 114 SNAMTYLAKGNVALSVCSTSVSTLLGPFLTPLLVGLLAG 152 (319)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 988998884333222233336777888888888887753
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=89.71 E-value=2 Score=39.35 Aligned_cols=108 Identities=18% Similarity=0.129 Sum_probs=71.5
Q ss_pred hhhhhhhcccccccC-CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHH
Q 015164 295 IPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGT 373 (412)
Q Consensus 295 VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~ 373 (412)
+-.+++.+|.++... .++..-.+|.++...+..++++|+++.++.+..- + +||-+..-+++..+.|.+...-.
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~-----~-~~~~~~~Gl~l~~~~P~~~~s~~ 77 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLL-----P-LSPALALGLLLVAACPGGPASNV 77 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHT-----T---HHHHHHHHHHHHS-B-THHHH
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHh-----c-CCHHHHHHHHHHhcCCcHHHHHH
Confidence 345566667666431 2222234677888889999999999999884332 2 48889999999999999999888
Q ss_pred HHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015164 374 ITQLFGAGESECSVIMLWTYALASVSITLWSTFFL 408 (412)
Q Consensus 374 itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~~l 408 (412)
+|.+.+....-........=..+.+.+|+|..++.
T Consensus 78 ~t~l~~Gd~~ls~~lt~istll~~~~~P~~~~l~~ 112 (187)
T PF01758_consen 78 FTYLAGGDVALSVSLTLISTLLAPFLMPLLLYLLS 112 (187)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccccceeeHHHHHHHHHHHHHHHHHh
Confidence 88777533333334444777889999999987764
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.13 E-value=3.1 Score=41.58 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccC-CCCCCCCcchhhhhHHHHHHHHH
Q 015164 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALP 332 (412)
Q Consensus 254 ~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP 332 (412)
.++.++++..|..=|-. +...+++.. +......|..+.++-|.+|.+. .+..-..+|....+...=+++.|
T Consensus 4 l~~l~~ai~la~~~P~~------g~~~~~~~~--~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 4 LLGLLLAILLAYLFPAP------GAAGGVIKP--EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred HHHHHHHHHHHHHcCcc------cccCCccch--hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 45666666666543322 122223321 1222333888999999888642 22234566888888999999999
Q ss_pred HHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHH-HHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015164 333 LVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIG-TITQLFGAGESECSVIMLWTYALASVSITLWSTFFL 408 (412)
Q Consensus 333 ~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~-~itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~~l 408 (412)
+++.++...... +. |+-+..=+++..|+||.++.+ .+|+..|-.+.-.-..-.-+-.+.++.+|+|+..++
T Consensus 76 ll~~~~~~l~~~--~~---~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~Al~~~~~snllgv~ltP~ll~l~l 147 (313)
T PF13593_consen 76 LLGFGLSRLFPA--FL---PPELALGLLILACLPTTVSSSVVLTRLAGGNVALALFNAVLSNLLGVFLTPLLLLLLL 147 (313)
T ss_pred HHHHHHHHHhhc--cC---CHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHHHHHHHHHhhhhHhHHHHHHHHHh
Confidence 999998876653 23 566899999999999998864 577766443332222223678889999999998876
No 11
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=84.85 E-value=2.6 Score=42.12 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCC
Q 015164 74 FMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLG 117 (412)
Q Consensus 74 ~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~ 117 (412)
.+-+..+++..+|+..||...|.+|.+++.|.-+.-|++-+|++
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~ 267 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLG 267 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHH
Confidence 56677788889999999999999999999999999999999986
No 12
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=83.78 E-value=1.6 Score=43.90 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhcc-----CCCCHHHHhhccchhheehhhhHHHHhhccccc--cccchhhhHHhHHHHHHHHHHH
Q 015164 15 LKVLLITALGSYLALDHV-----NILGEDARKHINNLVFYVFNPALVASNLANTIT--YESMLKLWFMPFNVLITFLVGS 87 (412)
Q Consensus 15 ~kVlli~~~G~~lA~~~~-----gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt--~~~l~~~w~ipv~~ll~~~ig~ 87 (412)
.-+++-...|..+.+... +...++.++.++.+.. +++=..++...+.+-. .++..+.+.+-+-.++.+.+++
T Consensus 182 ~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~-l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~ 260 (328)
T TIGR00832 182 IYLGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSL-IALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMF 260 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHH-HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 344555667776653111 1111233344555444 2333444444444421 1222233333334667889999
Q ss_pred HHHHHHHHhcCCCCCCcCceeEEeecCCC
Q 015164 88 ILGWIVVQFTRPPSHFRGLIVGCCAAGNL 116 (412)
Q Consensus 88 ~~g~l~~~~~~~p~~~~~~v~~~~~fgN~ 116 (412)
.+||.++|.+|.+++.|.-+.-+++-+|+
T Consensus 261 ~lg~~~~r~~~l~~~~~~a~~~e~g~qN~ 289 (328)
T TIGR00832 261 FLTFALAKKLGLPYSITAPAAFTGASNNF 289 (328)
T ss_pred HHHHHHHHHhCcChhhhhhheehhhhhhH
Confidence 99999999999999999999999999885
No 13
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=72.88 E-value=29 Score=34.82 Aligned_cols=137 Identities=12% Similarity=0.026 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchh------hhhhhccccccc-CCCCCCCCcchhhhhHHH
Q 015164 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIP------TVTLVVGGNLLR-GLRGSGIQKSIVFGIVVA 326 (412)
Q Consensus 254 ~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VP------l~llvLGa~L~~-g~~~s~~~~~~iv~i~~~ 326 (412)
..++++|+++|..-|-.. .+... . .+.....| .+++.+|.++.. ..++.--.+|.+....+.
T Consensus 13 ~~~~i~~~~~g~~~P~~~---------~~~~~-~-~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~ 81 (328)
T TIGR00832 13 FLAIAAGVGLGVLFPSVF---------QALAA-L-EVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFI 81 (328)
T ss_pred HHHHHHHHHHHHhccccH---------HHHHH-H-HhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHH
Confidence 566777888887544311 11111 0 11233444 366777787753 122233456788889999
Q ss_pred HHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHH-HHHHHHHHHHHHHHHH
Q 015164 327 RYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIM-LWTYALASVSITLWST 405 (412)
Q Consensus 327 RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~il-fw~Y~~~~vslt~w~t 405 (412)
-++++|+++.++.+..- + ++|-+..=+++..|.|.+..-..+|.+.+ |+-..|..+ -..=.++.+.+|.+..
T Consensus 82 qfvi~Plla~~l~~l~~-----~-~~p~l~~GliLv~~~Pgg~~S~v~T~lAk-Gnvalsv~lt~~stLl~~~~~P~l~~ 154 (328)
T TIGR00832 82 NWIIGPFLMFLLAWLFL-----R-DLFEYIAGLILLGLARCIAMVFVWNQLAK-GDPEYTLVLVAVNSLFQVFLYAPLAW 154 (328)
T ss_pred HHHHHHHHHHHHHHHHc-----C-CCHHHHHHHHHHHhcchHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876542 2 37779999999999999988777777763 333444433 3555566666667665
Q ss_pred hhh
Q 015164 406 FFL 408 (412)
Q Consensus 406 ~~l 408 (412)
+|+
T Consensus 155 ll~ 157 (328)
T TIGR00832 155 LLL 157 (328)
T ss_pred HHH
Confidence 554
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=62.02 E-value=11 Score=38.65 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhH----HhHHHHHHHHHHHHHH
Q 015164 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF----MPFNVLITFLVGSILG 90 (412)
Q Consensus 15 ~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~----ipv~~ll~~~ig~~~g 90 (412)
--++++...|.+++ ..|++|.+....+.+.+.+.++|.-++==| -+.+++++.+... +-+...+.+++|..++
T Consensus 26 ~~~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va 102 (378)
T PF05684_consen 26 PGAVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVA 102 (378)
T ss_pred CHHHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888999999 999996666667888888888887666544 4455555555543 3333444556666666
Q ss_pred HHHHHhcCCCCCCc
Q 015164 91 WIVVQFTRPPSHFR 104 (412)
Q Consensus 91 ~l~~~~~~~p~~~~ 104 (412)
+.+.+..--|..|+
T Consensus 103 ~~l~~~~l~~~~wk 116 (378)
T PF05684_consen 103 FLLFGGFLGPEGWK 116 (378)
T ss_pred HHHHhhcccchHHH
Confidence 66555442343333
No 15
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=51.38 E-value=65 Score=34.46 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHH------HHH
Q 015164 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------LVG 86 (412)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------~ig 86 (412)
|-+.+.+++..|.-.|. |.|.++.-.||.+.+.-=...+|..+|.-+-+++- .|.--+-++|+.+.+.. +.|
T Consensus 89 ~pLG~vlv~mlgvgvae-~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~Gr~PlaG 166 (508)
T PRK11339 89 APLGAILALVLGAGLAE-RVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVGRHPVAG 166 (508)
T ss_pred CcHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCChHHH
Confidence 34566667777765553 99999999999999999999999888766655553 23333778898888776 556
Q ss_pred HHHHHHH
Q 015164 87 SILGWIV 93 (412)
Q Consensus 87 ~~~g~l~ 93 (412)
.+.+++.
T Consensus 167 ia~~fag 173 (508)
T PRK11339 167 LLAAIAG 173 (508)
T ss_pred HHHHHHH
Confidence 6666553
No 16
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=48.30 E-value=2.4e+02 Score=30.23 Aligned_cols=80 Identities=23% Similarity=0.287 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHH------HHH
Q 015164 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------LVG 86 (412)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------~ig 86 (412)
|-+.+.+++..|.=.| .|.|+++.-.||.+++.-=.+.+|.++|.-+-+++-.| ..-.-.+|+.+++.. ..|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCChHHH
Confidence 3445566666665555 39999999999999999999999999999998888544 344456888777766 677
Q ss_pred HHHHHHHH
Q 015164 87 SILGWIVV 94 (412)
Q Consensus 87 ~~~g~l~~ 94 (412)
...|+..+
T Consensus 157 i~~afa~v 164 (502)
T PF03806_consen 157 IAAAFAGV 164 (502)
T ss_pred HHHHHHHH
Confidence 77777654
No 17
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=42.37 E-value=2.1e+02 Score=29.32 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=58.4
Q ss_pred HHHHhhccccccccchhhhH--HhHH--HHHHHHHHHHHHHHHHHhcCCCCCCcCceeEE----eecCCCCchHHHHHHH
Q 015164 55 LVASNLANTITYESMLKLWF--MPFN--VLITFLVGSILGWIVVQFTRPPSHFRGLIVGC----CAAGNLGNMPLIIIPA 126 (412)
Q Consensus 55 LiFs~la~~lt~~~l~~~w~--ipv~--~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~----~~fgN~~~LPl~li~s 126 (412)
..|+.++-.-+.+++++-|- .+.+ ..+...+..++|..+.+++..++. .+..... ++.|..... =+.
T Consensus 72 ~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~-~Gll~Gsi~f~GGhGTAaa~----g~~ 146 (368)
T PF03616_consen 72 IFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPL-FGLLAGSIGFTGGHGTAAAF----GPT 146 (368)
T ss_pred HHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-HHHHhccccccCCccHHHHH----HHH
Confidence 44777887777787777652 1111 112345677888888888888763 2332221 112222111 122
Q ss_pred hhhcCCCCCCChhhhhhhhHHHHHHHHHHhhHhhhhhccccccccc
Q 015164 127 VCKEKGSPFGSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRASS 172 (412)
Q Consensus 127 l~~~~~~pf~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~~~ 172 (412)
+.+. +|- +.+.+-|+++.-+....|.++-=-++-+++|+..
T Consensus 147 fe~~----~G~-~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~ 187 (368)
T PF03616_consen 147 FEEL----YGW-EGATSVGMAAATFGLVVGGLIGGPIANWLIRKGK 187 (368)
T ss_pred HHHh----cCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 2111 221 3478889999888887776653333344556554
No 18
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=40.84 E-value=74 Score=31.88 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhH-HhHHHHHHHHHHHHHHH
Q 015164 13 PVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGW 91 (412)
Q Consensus 13 pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~-ipv~~ll~~~ig~~~g~ 91 (412)
+++..++-..+|.++. . ++++.|+.+++-.-. ..|-.. --+|.+++++++.+.++ .-+..++...+...+++
T Consensus 165 ~lv~lilpILiGmilG--N---ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~ 237 (312)
T PRK12460 165 ALVAALLPLVLGMILG--N---LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNI 237 (312)
T ss_pred HHHHHHHHHHHHHHHh--c---cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4466888899999887 3 677777777766332 344333 35899999999999864 44445556678888899
Q ss_pred HHHHhcCCCCCCcCceeEEeecCCCCchHHHHHH
Q 015164 92 IVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIP 125 (412)
Q Consensus 92 l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~ 125 (412)
.+.|.+|.+++. ....+...||.--=|-++.+
T Consensus 238 ~i~rllg~~~~~--g~li~stAGnAIcgpAAVaA 269 (312)
T PRK12460 238 FADRLVGGTGIA--GAAASSTAGNAVATPLAIAA 269 (312)
T ss_pred HHHHHhCCChhH--HHHHHHHhhHHHHHHHHHHH
Confidence 999999887743 23333347887666666653
No 19
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=39.81 E-value=8.4 Score=42.05 Aligned_cols=101 Identities=18% Similarity=0.336 Sum_probs=67.5
Q ss_pred HhhccccccccchhhhHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCc-eeEEeecCCCCchHHHHHHHhhhcC-CCCC
Q 015164 58 SNLANTITYESMLKLWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGL-IVGCCAAGNLGNMPLIIIPAVCKEK-GSPF 135 (412)
Q Consensus 58 s~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~~~~-v~~~~~fgN~~~LPl~li~sl~~~~-~~pf 135 (412)
+||=+. .+++-+||+..+. +++.++|...+...+---+...| ++.||+++=...+|+.++||..++. |.
T Consensus 432 trlMkk--YKeVP~WWf~~il-----i~s~~l~~~~~~~~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GL-- 502 (761)
T KOG2262|consen 432 TRLMKK--YKEVPDWWFLAIL-----IVSLGLGLAACEGYKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGL-- 502 (761)
T ss_pred HHHHHH--hccCcHHHHHHHH-----HHHHHHHhhheeeecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccH--
Confidence 344444 6788889886653 33555666666555542233333 6677888889999999999997643 22
Q ss_pred CChhhhhhhhHHHHHHHHHHhhHhhhhhccccccc
Q 015164 136 GSPDTCQTYGLAYVSLSMAVGAIYLWSYVYNIVRA 170 (412)
Q Consensus 136 ~~~~~~~~rg~aY~~~~~~~g~i~~ws~g~~ll~~ 170 (412)
+...|.=..|+.=...+.+++.-+|||.-++.
T Consensus 503 ---NiitE~i~Gy~~PgrPiAn~~FK~yGyism~Q 534 (761)
T KOG2262|consen 503 ---NIITEYIIGYIYPGRPIANLCFKTYGYISMTQ 534 (761)
T ss_pred ---HHHHHHHHHhhcCCchHHHHHHHHhchhhHHH
Confidence 23455555666666688999999999976653
No 20
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=38.16 E-value=47 Score=33.79 Aligned_cols=84 Identities=7% Similarity=0.104 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhhccCCCCHHHHhhccc---hhheehhhhHHHHhhc-cccccccchhhhHHhH-HHHHHHHHHH-HHH
Q 015164 17 VLLITALGSYLALDHVNILGEDARKHINN---LVFYVFNPALVASNLA-NTITYESMLKLWFMPF-NVLITFLVGS-ILG 90 (412)
Q Consensus 17 Vlli~~~G~~lA~~~~gil~~~~~k~ls~---l~~~~FlP~LiFs~la-~~lt~~~l~~~w~ipv-~~ll~~~ig~-~~g 90 (412)
-..+...|+++. ..|+++++.....++ .+...+++.+++. ++ ...+++++.+.-=.|. ..++...+|+ +.+
T Consensus 207 ~v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 207 YAFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGG 283 (347)
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHH
Confidence 345677788888 999999987665444 4455577766662 22 4578888888641122 2233334444 445
Q ss_pred HHHHHhcCCCCCC
Q 015164 91 WIVVQFTRPPSHF 103 (412)
Q Consensus 91 ~l~~~~~~~p~~~ 103 (412)
+++.|+++.=+-+
T Consensus 284 ~lvGKllG~YPiE 296 (347)
T TIGR00783 284 AFLGKLMGMYPVE 296 (347)
T ss_pred HHHHHHhCCChHH
Confidence 6888999876633
No 21
>PRK11677 hypothetical protein; Provisional
Probab=37.73 E-value=35 Score=29.87 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=19.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCC
Q 015164 73 WFMPFNVLITFLVGSILGWIVVQFTRPP 100 (412)
Q Consensus 73 w~ipv~~ll~~~ig~~~g~l~~~~~~~p 100 (412)
|.+++ +.+++|.++|+++.|.+...
T Consensus 3 W~~a~---i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 3 WEYAL---IGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhccch
Confidence 55444 77789999999999976544
No 22
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=37.69 E-value=3.4e+02 Score=29.23 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=66.1
Q ss_pred HHHHHHH-HHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHH------
Q 015164 11 SIPVLKV-LLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITF------ 83 (412)
Q Consensus 11 ~~pv~kV-lli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~------ 83 (412)
+-|+.=| .++.++|+ | .|.|.++.-.||.++|.-=...+|..+|.-+=+++- .|.--+-++|+.+.+..
T Consensus 84 f~pLg~vlv~mlGvGv--a-e~tG~i~a~i~~~v~~~p~~~~t~ivv~~gv~s~~a-sdaG~vvl~PL~a~if~a~Gr~P 159 (513)
T TIGR00819 84 FAPLGAILALLLGAGI--A-EKSGLIPALMRKLASHSNAKLASFMVLFIAFFSHIA-SDAALVILIPLGALIFHALGRHP 159 (513)
T ss_pred CccHHHHHHHHHHHHH--H-HHhcHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcCCCh
Confidence 4455545 44444554 3 399999999999999999998899887765544443 23333778899888877
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhh
Q 015164 84 LVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCK 129 (412)
Q Consensus 84 ~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~ 129 (412)
+.|.+.+++.+- ++..++-.-+=++.+-..+-|..++
T Consensus 160 laGia~~fagvs---------~GFsAnl~~~~~Dpll~Git~~aA~ 196 (513)
T TIGR00819 160 LAGLAAAFAGVG---------CGFSANLFIGTIDPLLAGISQEAAA 196 (513)
T ss_pred HHHHHHHHHHHh---------hhhhcccccccccHHHHHHHHHHHH
Confidence 566666665431 1222222223344455556666655
No 23
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=35.90 E-value=4.6e+02 Score=27.45 Aligned_cols=132 Identities=20% Similarity=0.287 Sum_probs=84.0
Q ss_pred HHHHHH------HHHHHHHHHHhhhccCCCCHHHHhhccchh-----heehhhhHHHHhhc---cccccccchhhhHHhH
Q 015164 12 IPVLKV------LLITALGSYLALDHVNILGEDARKHINNLV-----FYVFNPALVASNLA---NTITYESMLKLWFMPF 77 (412)
Q Consensus 12 ~pv~kV------lli~~~G~~lA~~~~gil~~~~~k~ls~l~-----~~~FlP~LiFs~la---~~lt~~~l~~~w~ipv 77 (412)
-|++|= +++.....++. +.|+++++..+.+.+.. .++|.-||+-.++= +.+=.+...++ +|.
T Consensus 51 iPi~k~yiGGg~il~~f~ps~Lv--~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~--~p~ 126 (414)
T PF03390_consen 51 IPILKDYIGGGAILCIFVPSALV--YFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARF--IPP 126 (414)
T ss_pred ChhhhccCChHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHH--HHH
Confidence 366665 56666678888 99999999999887765 35677777766551 12222333444 555
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC--CcCceeEEeecCC-CCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHH
Q 015164 78 NVLITFLVGSILGWIVVQFTRPPSH--FRGLIVGCCAAGN-LGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSM 153 (412)
Q Consensus 78 ~~ll~~~ig~~~g~l~~~~~~~p~~--~~~~v~~~~~fgN-~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~ 153 (412)
.+...+.+.++|-++..+++...+ ..+.+++..+=|| -|.+|++.+-+=.- + .+.++-.++-+..+.+.+
T Consensus 127 -il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~--g---~~~~~~~s~~ipa~~lgN 199 (414)
T PF03390_consen 127 -ILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEAL--G---QDAEEYFSQLIPALTLGN 199 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHh--C---CCHHHHHHHHHHHHHHHH
Confidence 556667777888888888887653 4455666666666 79999999754322 1 234445555555554433
No 24
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=35.11 E-value=43 Score=36.27 Aligned_cols=150 Identities=15% Similarity=0.082 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccch-hheehhhhHHHHhhcccccc----------------------
Q 015164 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNL-VFYVFNPALVASNLANTITY---------------------- 66 (412)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l-~~~~FlP~LiFs~la~~lt~---------------------- 66 (412)
.-+|++-+.+++++|+++. |.++ |.+|-= +--++.=+|++.+++.++..
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 4589999999999999998 5443 222222 12233334555555444322
Q ss_pred -ccchh-hhHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCC----CChhh
Q 015164 67 -ESMLK-LWFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPF----GSPDT 140 (412)
Q Consensus 67 -~~l~~-~w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf----~~~~~ 140 (412)
+++++ =|..-+.+++...+|.++.+.+.|++++|...-.++. |++--|+-.|=-+ .+++.+-+..+- ...+.
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~~~~~~~~~~~~~~~ 157 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKLGLSPEQKTAYQGNV 157 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhcCCCcchhhcccccc
Confidence 23443 2455566677778899999999999999984333322 3333444444333 455533211100 00123
Q ss_pred hhhhhHHHHHHHHHHhhHhhhh-hcccccccc
Q 015164 141 CQTYGLAYVSLSMAVGAIYLWS-YVYNIVRAS 171 (412)
Q Consensus 141 ~~~rg~aY~~~~~~~g~i~~ws-~g~~ll~~~ 171 (412)
....+++|.. -.+|.++.-. ...+++|.+
T Consensus 158 avgYav~Ypf--Gvig~i~~~~~~~p~l~~~~ 187 (562)
T TIGR03802 158 AVAYAVTYIF--GTIGVIIVLVNILPWLMGID 187 (562)
T ss_pred ceeeehhhhh--HHHHHHHHHHHHHHHHhCCC
Confidence 4556666652 3466665433 345566654
No 25
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=33.57 E-value=1.6e+02 Score=29.57 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHH-hHHHHHHHHHHHHH
Q 015164 11 SIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFM-PFNVLITFLVGSIL 89 (412)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~i-pv~~ll~~~ig~~~ 89 (412)
.++.+.+++-..+|.++. . +|+|.||-+++-. .+..|-+-| .++..++++++.+=..- -+..++.+.+....
T Consensus 168 ~~~lv~~llP~iiG~iLG--N---LD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG--N---LDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh--c---CCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 678888999999999998 3 7999999999865 566787777 48999999999887632 22344445555566
Q ss_pred HHHHHHhc-CCCCCCcCceeEEeecCCCCchHHHHHH
Q 015164 90 GWIVVQFT-RPPSHFRGLIVGCCAAGNLGNMPLIIIP 125 (412)
Q Consensus 90 g~l~~~~~-~~p~~~~~~v~~~~~fgN~~~LPl~li~ 125 (412)
.++.-|.. |=+ =....-..+..||.-.-|-++-+
T Consensus 241 ~~~~dr~i~~~~--g~aG~A~sstAGnavatPaaiA~ 275 (314)
T PF03812_consen 241 LYLADRLILKGN--GVAGAAISSTAGNAVATPAAIAA 275 (314)
T ss_pred HHHHHHHHcCCC--CceeehHHhhhhhhhhhhHHHHH
Confidence 66777764 321 11234446778999999988854
No 26
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=32.36 E-value=1.4e+02 Score=30.63 Aligned_cols=103 Identities=12% Similarity=0.113 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCH-HHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHHHHHHHH
Q 015164 14 VLKVLLITALGSYLALDHVNILGE-DARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (412)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~-~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (412)
..-+++++.+|...+ +...... .+...++....++ .|.-+|..-+++++.+-..+.+..++...+-.++=+.
T Consensus 240 ~~~il~~tt~~l~~~--~~~~~~~l~g~~~lg~~lly~-----ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATS--FPPFRKLLRGASELGTFLLYL-----FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHh--ccchhhcCCchHHHHHHHHHH-----HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345667777887776 3222222 4455555555554 5788999999999999545566666666777888888
Q ss_pred HHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHh
Q 015164 93 VVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAV 127 (412)
Q Consensus 93 ~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl 127 (412)
+.|++|.|. ..+.-++=.|+|.=+.+-..|-
T Consensus 313 ~~kl~k~~l----~~~~vAS~AnIGGpaTA~a~A~ 343 (378)
T PF05684_consen 313 LGKLFKIDL----FELLVASNANIGGPATAPAVAA 343 (378)
T ss_pred HHHHHCCCH----HHHHHHhhcccCCcchHHHHHH
Confidence 999999988 5555556666666666644433
No 27
>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function.
Probab=30.59 E-value=5.6e+02 Score=25.61 Aligned_cols=150 Identities=18% Similarity=0.253 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchh-----hhHHhHHHHHHHH
Q 015164 10 SSIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLK-----LWFMPFNVLITFL 84 (412)
Q Consensus 10 a~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~-----~w~ipv~~ll~~~ 84 (412)
=.-|.+--+++.++|.+.- ..| ++.+|-.-+.+++.+-.=|+-----|.++=-|-++. -+.+|+..-+..+
T Consensus 10 RaIPL~M~~~Cf~yG~fv~--~~g--~d~~~~vAG~Vv~sL~~ICiALf~TAatIIrQli~ty~~~~k~~lP~iGY~~a~ 85 (347)
T PF10951_consen 10 RAIPLLMALICFGYGAFVL--DYG--TDSNRFVAGPVVFSLGAICIALFTTAATIIRQLIHTYNTFAKYLLPIIGYLAAA 85 (347)
T ss_pred HHHHHHHHHHHHHhhHHHc--ccC--CCcCceeecceeehHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHH
Confidence 3567777788889996655 333 444454455555555555554433333332222222 2367877766677
Q ss_pred HHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHH----hhhc-----------CCCCCCChhhhhhhhHHHH
Q 015164 85 VGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPA----VCKE-----------KGSPFGSPDTCQTYGLAYV 149 (412)
Q Consensus 85 ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~s----l~~~-----------~~~pf~~~~~~~~rg~aY~ 149 (412)
+.++-||....--..|.++-.+=+. || +.++.+ .+.+ ++.+.+.++++.+++..|+
T Consensus 86 ~T~i~G~~~~~~~~~~~~fVaGhVi---~G------vGlItaCVaT~AtSStrF~LIP~Ns~~~~~~~p~~afs~~~~~~ 156 (347)
T PF10951_consen 86 ITIIGGIYIFSSGPNAAYFVAGHVI---FG------VGLITACVATVATSSTRFTLIPKNSKGTSHEVPKGAFSRGQGNI 156 (347)
T ss_pred HHHHHHHHHhcCCCChhhhccCcee---ec------hhHHHHHHHHhhhccccEEEeecCCCCCCCCCChhhcchHHHHH
Confidence 7778887774433445543322222 21 122222 2111 1223445778999999999
Q ss_pred HHHHH-HhhHhhhhhccccccccc
Q 015164 150 SLSMA-VGAIYLWSYVYNIVRASS 172 (412)
Q Consensus 150 ~~~~~-~g~i~~ws~g~~ll~~~~ 172 (412)
++... +-.+..|-|.+.++++.+
T Consensus 157 Liav~~~~~li~~iw~~~Ll~~~~ 180 (347)
T PF10951_consen 157 LIAVPILCALIGWIWAIVLLSSSD 180 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99885 556688999999998653
No 28
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.51 E-value=49 Score=28.56 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 015164 79 VLITFLVGSILGWIVVQFTRPP 100 (412)
Q Consensus 79 ~ll~~~ig~~~g~l~~~~~~~p 100 (412)
+++.+++|+++|+++.|.+.-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678889999999999987655
No 29
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.78 E-value=75 Score=23.63 Aligned_cols=26 Identities=35% Similarity=0.768 Sum_probs=20.3
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcC
Q 015164 73 WFMPFNVLITFLVGSILGWIVVQFTR 98 (412)
Q Consensus 73 w~ipv~~ll~~~ig~~~g~l~~~~~~ 98 (412)
++..+..++++++|+++||++....+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999998875443
No 30
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.65 E-value=83 Score=24.42 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=19.5
Q ss_pred hhhHHhHHHHHHHHHHHHHHHHHHH
Q 015164 71 KLWFMPFNVLITFLVGSILGWIVVQ 95 (412)
Q Consensus 71 ~~w~ipv~~ll~~~ig~~~g~l~~~ 95 (412)
+.|...+++.+..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565558888888999999988774
No 31
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=28.39 E-value=1.6e+02 Score=31.21 Aligned_cols=72 Identities=18% Similarity=0.245 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHH-HHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHH
Q 015164 11 SIPVLKVLLITA-LGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVG 86 (412)
Q Consensus 11 ~~pv~kVlli~~-~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig 86 (412)
+-|...|+.... +|. +- |.|+++.-.||.+++.-=.+.+|..+|.-+.++. .+|..-.-.+|+.+++...+|
T Consensus 89 FpPLG~VLv~mLGigv-AE--~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~G 161 (516)
T COG2978 89 FPPLGTVLVVMLGIGV-AE--RSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIALG 161 (516)
T ss_pred CCchHHHHHHHHhhhh-hh--hcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHhC
Confidence 456666665544 555 33 9999999999999999999999999999987775 455566667889888776443
No 32
>PRK04972 putative transporter; Provisional
Probab=27.55 E-value=87 Score=33.93 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhh-eehhhhHHHHhhccccc-----------------------c
Q 015164 11 SIPVLKVLLITALGSYLALDHVNILGEDARKHINNLVF-YVFNPALVASNLANTIT-----------------------Y 66 (412)
Q Consensus 11 ~~pv~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~-~~FlP~LiFs~la~~lt-----------------------~ 66 (412)
-.|++-+.+++++|+++. |..+ |.+|-=.. -.+.=.|++..++.++. .
T Consensus 11 ~~~~~~lf~~i~lG~~lG--~i~~------~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F~ 82 (558)
T PRK04972 11 GNYILLLFVVLALGLCLG--KLRL------GSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFF 82 (558)
T ss_pred cCChHHHHHHHHHHHhhh--ceEE------eeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHHH
Confidence 368888899999999888 5433 22221111 22222333333333321 1
Q ss_pred ccchhh-hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchH
Q 015164 67 ESMLKL-WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMP 120 (412)
Q Consensus 67 ~~l~~~-w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LP 120 (412)
+++++- |-.-+..++.++++.++++.+.|+++++. ...+....|-.+|=|
T Consensus 83 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~aGa~T~tp 133 (558)
T PRK04972 83 SIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI----GLTAGMLAGSMTSTP 133 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhhccccCcH
Confidence 233332 44555677778899999999999999998 444433344444433
No 33
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=27.50 E-value=1.6e+02 Score=29.42 Aligned_cols=96 Identities=23% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCHHH---HhhccchhheehhhhHHHHhhccccccc---cc--hhhhHHhHHHHHHH
Q 015164 12 IPVLKVLLITALGSYLALDHVNILGEDA---RKHINNLVFYVFNPALVASNLANTITYE---SM--LKLWFMPFNVLITF 83 (412)
Q Consensus 12 ~pv~kVlli~~~G~~lA~~~~gil~~~~---~k~ls~l~~~~FlP~LiFs~la~~lt~~---~l--~~~w~ipv~~ll~~ 83 (412)
+=+.++++-..+|-.+. |. +.+.. +|.++++ =...+-.++++...++..-+ ++ .+...+-+..+...
T Consensus 162 ~L~~~vllP~~~Gq~~r--~~--~~~~~~~~~~~~~~~-~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (313)
T PF13593_consen 162 KLVLTVLLPLVLGQLLR--RW--VPKWVARHKKPLSLL-SQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLL 236 (313)
T ss_pred HHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHH
Confidence 34566777777787665 21 22322 2222222 23334556666665553222 22 23333444455566
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCceeEEee
Q 015164 84 LVGSILGWIVVQFTRPPSHFRGLIVGCCA 112 (412)
Q Consensus 84 ~ig~~~g~l~~~~~~~p~~~~~~v~~~~~ 112 (412)
.+.+.++|...|.+|.+++.|--++.|++
T Consensus 237 ~~~l~~~~~~~r~~~~~~~d~iA~~F~gs 265 (313)
T PF13593_consen 237 LVVLVLGWLAARLLGFSRPDRIAVLFCGS 265 (313)
T ss_pred HHHHHHHHHHHhhcCCChhhEEEEEEEcC
Confidence 78889999999999999988766666655
No 34
>COG2323 Predicted membrane protein [Function unknown]
Probab=27.09 E-value=1.4e+02 Score=28.42 Aligned_cols=81 Identities=9% Similarity=0.184 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHHHHHHHHHHHHHHHHH
Q 015164 14 VLKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFNVLITFLVGSILGWIV 93 (412)
Q Consensus 14 v~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l~ 93 (412)
++|-+++..+++++. | --+||++|.+...=|.=.+.+..++.....++=...|...+.+++..++..++.|+.
T Consensus 8 ~ir~vi~~~~l~l~~--r-----i~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~ 80 (224)
T COG2323 8 AIRSVIGYLILLLLL--R-----IMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLS 80 (224)
T ss_pred HHHHHHHHHHHHHHH--H-----HhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777666 4 467999999999999999999999999988886777766666666777788888887
Q ss_pred HHhcCCCC
Q 015164 94 VQFTRPPS 101 (412)
Q Consensus 94 ~~~~~~p~ 101 (412)
.|--|+-+
T Consensus 81 ~ks~~~r~ 88 (224)
T COG2323 81 LKSRKLRK 88 (224)
T ss_pred hccHHHHH
Confidence 76555444
No 35
>PRK03818 putative transporter; Validated
Probab=25.26 E-value=1.2e+02 Score=32.88 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=51.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHH-HH-HHHhhhcCCCC-CCChhhhhhhhHHHH
Q 015164 73 WFMPFNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPL-II-IPAVCKEKGSP-FGSPDTCQTYGLAYV 149 (412)
Q Consensus 73 w~ipv~~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl-~l-i~sl~~~~~~p-f~~~~~~~~rg~aY~ 149 (412)
|-..+..++.++++.+++|+..+++|.|. ...+....|-.+|=|- +- .+++. +.+.. -..++-....+++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~aGa~T~tp~l~aa~~~~~-~~~~~~~~~~~~a~gYa~~Yp 165 (552)
T PRK03818 91 LRLNLFAVLIVILGGLVTAILHKLFGIPL----PVMLGIFSGAVTNTPALGAGQQILR-DLGTPGDLVDQMGMGYAMAYP 165 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhhccccccHHHHHHHHHHh-ccCCCccccCCcchhhHhHhH
Confidence 45556677888899999999999999998 4444444454455443 22 22231 11110 011223455666665
Q ss_pred HHHHHHhhHhhhhhcccccccc
Q 015164 150 SLSMAVGAIYLWSYVYNIVRAS 171 (412)
Q Consensus 150 ~~~~~~g~i~~ws~g~~ll~~~ 171 (412)
. -.++.++.-.+..++++.+
T Consensus 166 ~--g~i~~il~~~~~~~~~~~~ 185 (552)
T PRK03818 166 F--GICGILLSMWLIRLIFRIN 185 (552)
T ss_pred H--HHHHHHHHHHHHHHHhCCC
Confidence 3 2355554333566666654
No 36
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=24.86 E-value=8e+02 Score=25.54 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 015164 319 IVFGIVVARYVALPLVGIVIV 339 (412)
Q Consensus 319 ~iv~i~~~RliilP~igi~iv 339 (412)
.+....+.|++..|++.+..+
T Consensus 339 ~l~i~s~~R~iFIPlf~lcn~ 359 (437)
T TIGR00939 339 WLPILSFLRVLFIPLFLLCNY 359 (437)
T ss_pred chHHHHHHHHHHHHHHHHhcC
Confidence 677788999999999865533
No 37
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=24.82 E-value=62 Score=32.25 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhc-cCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhH-HhHHHHHHHHHHHHHHHHH
Q 015164 16 KVLLITALGSYLALDH-VNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWF-MPFNVLITFLVGSILGWIV 93 (412)
Q Consensus 16 kVlli~~~G~~lA~~~-~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~-ipv~~ll~~~ig~~~g~l~ 93 (412)
-+.+-..+|..++ + .--.++..++.++. .-..+++ +=..=+|-+++++++.+.++ .-+...+.......+++.+
T Consensus 28 ~~~~AillG~~i~--n~~~~~~~~~~~Gi~~-~~k~~Lr-~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~l 103 (305)
T PF03601_consen 28 ALLIAILLGMLIG--NLFFGLPARFKPGIKF-SSKKLLR-LGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWL 103 (305)
T ss_pred HHHHHHHHHHHHh--hhccCCcHHHHhHHHH-HHHHHHH-HHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 3456667777776 3 11123333333321 1111111 11223789999999999987 3333556667788888888
Q ss_pred H-HhcCCCCCCcC
Q 015164 94 V-QFTRPPSHFRG 105 (412)
Q Consensus 94 ~-~~~~~p~~~~~ 105 (412)
. |.+|+|+++.-
T Consensus 104 g~r~~~l~~~~~~ 116 (305)
T PF03601_consen 104 GRRLFGLDRKLAI 116 (305)
T ss_pred HHHHhCCCHHHHH
Confidence 8 99999986554
No 38
>PRK05326 potassium/proton antiporter; Reviewed
Probab=23.90 E-value=2.2e+02 Score=30.67 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=55.5
Q ss_pred HHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHhHH-HHHHHHHH-HHHHHHHHHhcC
Q 015164 21 TALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMPFN-VLITFLVG-SILGWIVVQFTR 98 (412)
Q Consensus 21 ~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ipv~-~ll~~~ig-~~~g~l~~~~~~ 98 (412)
...|..++ +......+..++..+..-.++.|. .|..+|-.++++++.+.++.-+. +++...++ .+..++..+.+|
T Consensus 251 ~iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~ 327 (562)
T PRK05326 251 YLAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFR 327 (562)
T ss_pred HHHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 35566665 333333343444444445567755 79999999999988776542221 11222233 333345556777
Q ss_pred CCCCCcCceeEEeecCCCCchHHHHH
Q 015164 99 PPSHFRGLIVGCCAAGNLGNMPLIII 124 (412)
Q Consensus 99 ~p~~~~~~v~~~~~fgN~~~LPl~li 124 (412)
.|.+++-++--+ |-=|..|+++-
T Consensus 328 ~~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 328 FNLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CCHhhhheeeee---cchhHHHHHHH
Confidence 777655444332 45778887664
No 39
>TIGR00410 lacE PTS system, lactose/cellobiose family IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. This family of proteins consists of both the cellobiose specific and the lactose specific forms of the phosphotransferase system (PTS) IIC component. The IIC domain catalyzes the transfer of a phosphoryl group from the IIB domain to the substrate. When the IIC component and IIB components are in the same polypeptide chain they are designated IIBC.
Probab=23.78 E-value=3.1e+02 Score=28.66 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 015164 323 IVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITL 402 (412)
Q Consensus 323 i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~ 402 (412)
+.++-|++.|++...+.+.+.+.|+++. . .+...-+++|+-++ +.++. ..+..+. +||-++.+++.-+
T Consensus 339 il~IPFil~P~v~~~iay~a~~~g~vp~---~--~~~~vpwttP~~l~-~~l~T-----gg~~~a~-il~~v~lvi~~lI 406 (423)
T TIGR00410 339 ILIIPFVLAPLVTITVTYIAMSTGLVPP---P--VGIAVPWTMPPGIS-GFFAT-----GGSVSGA-VMQLINLLISFVI 406 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCc---c--ccccCCCCCCHHHH-HHHHc-----CCcHHHH-HHHHHHHHHHHHH
Confidence 4678999999999999999999999974 0 23556889998887 66532 1233333 4788888888888
Q ss_pred HHHhhh
Q 015164 403 WSTFFL 408 (412)
Q Consensus 403 w~t~~l 408 (412)
|.=|+-
T Consensus 407 Y~PFvk 412 (423)
T TIGR00410 407 YLPFFK 412 (423)
T ss_pred HHHHHH
Confidence 876654
No 40
>TIGR00359 cello_pts_IIC phosphotransferase system, cellobiose specific, IIC component. The family consists of the cellobiose specific form of the phosphotransferase system (PTS), IIC component.
Probab=23.78 E-value=3.1e+02 Score=28.66 Aligned_cols=74 Identities=23% Similarity=0.377 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 015164 323 IVVARYVALPLVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITL 402 (412)
Q Consensus 323 i~~~RliilP~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~ 402 (412)
+.++-|++.|++...+.+.+.+.|+++. . .+...-+++|+-++ +.++. ..+..+. +||-++.+++.-+
T Consensus 339 il~IPFil~P~v~~~iay~a~~~g~vp~---~--~~~~vpwttP~~l~-~~l~T-----gg~~~a~-il~~v~lvi~~lI 406 (423)
T TIGR00359 339 ILIIPFVLAPLVTITVTYIAMSTGLVPP---P--VGIAVPWTMPPGIS-GFFAT-----GGSVSGA-VMQLINLLISFVI 406 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCc---c--ccccCCCCCCHHHH-HHHHc-----CCcHHHH-HHHHHHHHHHHHH
Confidence 4678999999999999999999999974 0 23556889998887 66532 1233333 4788888888888
Q ss_pred HHHhhh
Q 015164 403 WSTFFL 408 (412)
Q Consensus 403 w~t~~l 408 (412)
|.=|+-
T Consensus 407 Y~PFvk 412 (423)
T TIGR00359 407 YLPFFK 412 (423)
T ss_pred HHHHHH
Confidence 876654
No 41
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=23.19 E-value=1.8e+02 Score=30.04 Aligned_cols=79 Identities=11% Similarity=0.133 Sum_probs=55.6
Q ss_pred HHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhhhHHh-HHHHHHHHHHHHHHHHHHHhcCC
Q 015164 21 TALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKLWFMP-FNVLITFLVGSILGWIVVQFTRP 99 (412)
Q Consensus 21 ~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~w~ip-v~~ll~~~ig~~~g~l~~~~~~~ 99 (412)
...|..++ +...-.++..+++..+...+|.| +-|.++|-+++++.+.+.|..- +...+....=.+..++..|.+|.
T Consensus 250 FlaGl~ls--~~~~~~~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~ 326 (397)
T COG0475 250 FLAGLLLS--ESEYRKHELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGF 326 (397)
T ss_pred HHHHHHhc--ccccchHHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566555 43211258888999988888887 7799999999999999988773 33333334445557888999996
Q ss_pred CCC
Q 015164 100 PSH 102 (412)
Q Consensus 100 p~~ 102 (412)
+++
T Consensus 327 ~~~ 329 (397)
T COG0475 327 SKR 329 (397)
T ss_pred cHH
Confidence 653
No 42
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=22.88 E-value=3.4e+02 Score=28.17 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccCCCCCCCCcchhhhhHHHHHHHHHH
Q 015164 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARYVALPL 333 (412)
Q Consensus 254 ~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~RliilP~ 333 (412)
.+|..+|+++|+. ||...=.+++...--.|=.+..|++.| -+.+|+++|+
T Consensus 35 ~~aL~lG~vfG~~--Lq~~~g~~~~~~~~t~~W~nivgnGYV----------------------------~LLqMivmPL 84 (458)
T COG1823 35 LIALVLGVVFGLA--LQYIYGTDSPVLKETIDWFNIVGNGYV----------------------------RLLQMIVMPL 84 (458)
T ss_pred HHHHHHHHHHHHH--HHHHhcCCchHHHhHhHHHHHhhhHHH----------------------------HHHHHHHHHH
Confidence 7888899999885 454432333322333333456666654 2456788888
Q ss_pred HHHHHHHhhHhcC
Q 015164 334 VGIVIVKGAVRFG 346 (412)
Q Consensus 334 igi~iv~~~~k~g 346 (412)
+-+.++....|..
T Consensus 85 VfiSIlsAi~kl~ 97 (458)
T COG1823 85 VFISILSAIAKLD 97 (458)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877666643
No 43
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=22.60 E-value=82 Score=24.11 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=32.8
Q ss_pred ccccccccchhhh--HHhHHHHHHHHHHHHHHHHHH---HhcCCCCCCc
Q 015164 61 ANTITYESMLKLW--FMPFNVLITFLVGSILGWIVV---QFTRPPSHFR 104 (412)
Q Consensus 61 a~~lt~~~l~~~w--~ipv~~ll~~~ig~~~g~l~~---~~~~~p~~~~ 104 (412)
..+.+.+.+|-|| ++|=..++++.++.+.|-.-. |+.++|.+..
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~~ 60 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTSS 60 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCccc
Confidence 3566788999999 888888888888888775544 6667777543
No 44
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=22.50 E-value=1.9e+02 Score=29.10 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCHHHHhhccchhheehhhhHHHHhhccccccccchhh-hHHhHHHHHHHHHHHHHHHHH
Q 015164 15 LKVLLITALGSYLALDHVNILGEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITFLVGSILGWIV 93 (412)
Q Consensus 15 ~kVlli~~~G~~lA~~~~gil~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~-w~ipv~~ll~~~ig~~~g~l~ 93 (412)
+++++...+|..+. . ++++-++..++- .++.+|+-.|. +|.+++.+++.+- +.-++..+...++....++..
T Consensus 174 i~allplliG~~lg--n---l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG--N---LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH--h---HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668999999887 2 677666666554 45599999998 9999999999777 455555555555566667788
Q ss_pred HHhcCCCCCCcCceeEEeecCCCCchHHHH
Q 015164 94 VQFTRPPSHFRGLIVGCCAAGNLGNMPLII 123 (412)
Q Consensus 94 ~~~~~~p~~~~~~v~~~~~fgN~~~LPl~l 123 (412)
-|+++..+... ++-...+.||.--=|-++
T Consensus 247 ~Rl~~~~~g~~-g~a~~ttaG~aic~pAAv 275 (326)
T PRK05274 247 DRLIGGGNGVA-GAAAGSTAGNAVATPAAV 275 (326)
T ss_pred hheeecCCCcc-hHHHHHHHHHHHHHHHHH
Confidence 89886544322 233334556655555553
No 45
>PRK01844 hypothetical protein; Provisional
Probab=22.39 E-value=1.3e+02 Score=23.43 Aligned_cols=24 Identities=17% Similarity=0.605 Sum_probs=17.6
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHH
Q 015164 72 LWFMPFNVLITFLVGSILGWIVVQ 95 (412)
Q Consensus 72 ~w~ipv~~ll~~~ig~~~g~l~~~ 95 (412)
.|+..+..++..++|.+.|+.++|
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455455566788899999988875
No 46
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=21.58 E-value=1e+02 Score=20.46 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=15.5
Q ss_pred hhhhhhhHHHHHHHHHHhhHh
Q 015164 139 DTCQTYGLAYVSLSMAVGAIY 159 (412)
Q Consensus 139 ~~~~~rg~aY~~~~~~~g~i~ 159 (412)
.+..++|++|++...++...+
T Consensus 11 g~aiDqgiay~Lm~~Al~~ty 31 (34)
T PF06376_consen 11 GKAIDQGIAYMLMLVALVVTY 31 (34)
T ss_pred cchhhHHHHHHHHHHHHHHHh
Confidence 346899999999877655443
No 47
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=21.36 E-value=3.2e+02 Score=28.33 Aligned_cols=101 Identities=18% Similarity=0.292 Sum_probs=67.1
Q ss_pred HHHHHHHhhhccCCCCHHHHhhccchh-----heehhhhHHHHhhc---cccccccchhhhHHhHHHHHHHHHHHHHHHH
Q 015164 21 TALGSYLALDHVNILGEDARKHINNLV-----FYVFNPALVASNLA---NTITYESMLKLWFMPFNVLITFLVGSILGWI 92 (412)
Q Consensus 21 ~~~G~~lA~~~~gil~~~~~k~ls~l~-----~~~FlP~LiFs~la---~~lt~~~l~~~w~ipv~~ll~~~ig~~~g~l 92 (412)
..+-.++. +.|+++++.-|..+... .++|.+||+.-++= +.+=.+.++++ +|. .++....+.+.|-+
T Consensus 83 ~fvaa~~v--~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~--i~~-il~g~v~A~~~g~l 157 (438)
T COG3493 83 LFVAAYLV--FYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRY--IPP-ILAGMVGAAAVGIL 157 (438)
T ss_pred HHHHHHHH--HhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhh--hHH-HHHHHHHHHHHHHH
Confidence 33344556 78999999999988764 57899999987652 22234445555 333 33444556677777
Q ss_pred HHHhcCCCCC--CcCceeEEeecCCC-CchHHHHHHH
Q 015164 93 VVQFTRPPSH--FRGLIVGCCAAGNL-GNMPLIIIPA 126 (412)
Q Consensus 93 ~~~~~~~p~~--~~~~v~~~~~fgN~-~~LPl~li~s 126 (412)
+..+++.+.+ .-+.+++..+=||- |.+|++.+-|
T Consensus 158 VG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs 194 (438)
T COG3493 158 VGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYS 194 (438)
T ss_pred HHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHH
Confidence 7788887664 45556666666654 8899999854
No 48
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=20.10 E-value=1.7e+02 Score=25.85 Aligned_cols=47 Identities=15% Similarity=0.444 Sum_probs=34.5
Q ss_pred HHHHhhccccccccchh---hhH-HhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 015164 55 LVASNLANTITYESMLK---LWF-MPFNVLITFLVGSILGWIVVQFTRPPS 101 (412)
Q Consensus 55 LiFs~la~~lt~~~l~~---~w~-ipv~~ll~~~ig~~~g~l~~~~~~~p~ 101 (412)
++-..+|.++|.+++++ +|. .-+..+++.+++.+.+|++.|..+.|.
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~~ 105 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVDP 105 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 34577888888776555 443 344455566889999999999999887
Done!