Query 015164
Match_columns 412
No_of_seqs 113 out of 256
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 96.7 0.0035 1.2E-07 61.6 8.6 135 254-408 21-156 (332)
2 3zux_A Transporter, ASBTNM; tr 89.1 0.61 2.1E-05 45.4 6.6 79 77-163 232-310 (332)
3 2k1a_A Integrin alpha-IIB; sin 12.0 3.4E+02 0.012 17.9 4.5 36 311-350 4-39 (42)
4 1zcd_A Na(+)/H(+) antiporter 1 9.1 2.1E+02 0.0073 28.1 3.6 96 36-131 248-352 (388)
5 1q90_G Cytochrome B6F complex 8.7 1.4E+02 0.0048 19.2 1.3 11 258-268 6-16 (37)
6 4f4l_A ION transport protein; 7.8 4.1E+02 0.014 20.8 4.2 20 144-163 69-88 (112)
7 2knc_A Integrin alpha-IIB; tra 7.2 5.4E+02 0.018 17.9 4.0 36 310-349 5-40 (54)
8 1q90_M Cytochrome B6F complex 7.2 5.4E+02 0.018 16.7 3.9 23 75-97 9-31 (39)
9 1vf5_F Protein PET M; photosyn 6.7 5.4E+02 0.018 16.3 3.7 23 76-98 9-31 (35)
10 2l8s_A Integrin alpha-1; trans 5.4 7.7E+02 0.026 17.1 3.9 33 313-349 5-37 (54)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=96.75 E-value=0.0035 Score=61.61 Aligned_cols=135 Identities=9% Similarity=-0.064 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcchhhHhhhcCCCCChhhHHHHHHHhcCcchhhhhhhcccccccC-CCCCCCCcchhhhhHHHHHHHHH
Q 015164 254 TIGALAGFIIGLVPLIRKSMIGDSAPLRVIQDSASLIGDGAIPTVTLVVGGNLLRG-LRGSGIQKSIVFGIVVARYVALP 332 (412)
Q Consensus 254 ~ia~i~giiVgliPpLr~lff~~~~pL~~i~~s~~~lG~a~VPl~llvLGa~L~~g-~~~s~~~~~~iv~i~~~RliilP 332 (412)
++..+++.++|..-|=. ..++... -...+.++++..|.++... .++.--.+|.+....+.+++++|
T Consensus 21 ~l~i~~~~~lg~~~P~~---------~~~~~~~----i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~P 87 (332)
T 3zux_A 21 SLWAALFAAAAFFAPDT---------FKWAGPY----IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMP 87 (332)
T ss_dssp HHHHHHHHHHHHHCGGG---------TGGGGGG----HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcchh---------hhhhHHH----HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 66677777777653321 1111112 2246889999999999652 11112346777788999999999
Q ss_pred HHHHHHHHhhHhcCCcCCCChhhhHHHhhccCCchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015164 333 LVGIVIVKGAVRFGFVCSDDLLYQFILLLQFAMPPAMNIGTITQLFGAGESECSVIMLWTYALASVSITLWSTFFL 408 (412)
Q Consensus 333 ~igi~iv~~~~k~g~~~~~Dpv~~fvl~l~~~~PpA~~l~~itql~~~~e~e~s~ilfw~Y~~~~vslt~w~t~~l 408 (412)
+++..+.+.. + +||.+...+++..+.|++.+-..+|++.+....-.......+-.++++.+|+|..+++
T Consensus 88 ll~~~l~~~~------~-l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~ 156 (332)
T 3zux_A 88 ATAWCLSKLL------N-LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA 156 (332)
T ss_dssp HHHHHHHHHT------T-CCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------C-CChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999987643 3 4999999999999999999988899988766555666667888999999999988765
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=89.09 E-value=0.61 Score=45.44 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCceeEEeecCCCCchHHHHHHHhhhcCCCCCCChhhhhhhhHHHHHHHHHHh
Q 015164 77 FNVLITFLVGSILGWIVVQFTRPPSHFRGLIVGCCAAGNLGNMPLIIIPAVCKEKGSPFGSPDTCQTYGLAYVSLSMAVG 156 (412)
Q Consensus 77 v~~ll~~~ig~~~g~l~~~~~~~p~~~~~~v~~~~~fgN~~~LPl~li~sl~~~~~~pf~~~~~~~~rg~aY~~~~~~~g 156 (412)
+..++.+.+++.+||.+.|.+|.+++.+.-+.-.|+.+|+ .+-+.+..+. |+++....--...|-..-+..+
T Consensus 232 ~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 232 AVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHHHH
Confidence 3466777999999999999999999888777777889998 3544444333 3211123333344655555566
Q ss_pred hHhhhhh
Q 015164 157 AIYLWSY 163 (412)
Q Consensus 157 ~i~~ws~ 163 (412)
.++.+-|
T Consensus 304 ~~la~~~ 310 (332)
T 3zux_A 304 SLLATYW 310 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=11.99 E-value=3.4e+02 Score=17.88 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCCCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcCC
Q 015164 311 RGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVCS 350 (412)
Q Consensus 311 ~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~~ 350 (412)
+..++|++.++..+++=++++.++ +..++|.|+.+.
T Consensus 4 ~~~~vp~wiIi~s~l~GLllL~li----~~~LwK~GFFkR 39 (42)
T 2k1a_A 4 EERAIPIWWVLVGVLGGLLLLTIL----VLAMWKVGFFKR 39 (42)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHH----HHHHHHTTTTCC
T ss_pred CcCCcchHHHHHHHHHHHHHHHHH----HHHHHHcCcccC
Confidence 345688888888888877776654 445678888763
No 4
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=9.09 E-value=2.1e+02 Score=28.08 Aligned_cols=96 Identities=15% Similarity=0.257 Sum_probs=60.8
Q ss_pred CHHHHhhccchhheehhhhHHHHhhccccccccchhh-hHHhHHHHHHH----HHH-HHHHHHHHHhc--CCCCCCcC-c
Q 015164 36 GEDARKHINNLVFYVFNPALVASNLANTITYESMLKL-WFMPFNVLITF----LVG-SILGWIVVQFT--RPPSHFRG-L 106 (412)
Q Consensus 36 ~~~~~k~ls~l~~~~FlP~LiFs~la~~lt~~~l~~~-w~ipv~~ll~~----~ig-~~~g~l~~~~~--~~p~~~~~-~ 106 (412)
.++-++.+...+..+++|---|.|.|=+++.+..... -+.++.+.+.- .+| +..+|+..|+. |+|+..+. .
T Consensus 248 ~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~ 327 (388)
T 1zcd_A 248 AKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQ 327 (388)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHH
Confidence 4667888899999999999999999999987432222 01111111111 333 22355665555 67776433 4
Q ss_pred eeEEeecCCCCchHHHHHHHhhhcC
Q 015164 107 IVGCCAAGNLGNMPLIIIPAVCKEK 131 (412)
Q Consensus 107 v~~~~~fgN~~~LPl~li~sl~~~~ 131 (412)
..+.+.-.|++-..=.++..++-++
T Consensus 328 ~~~vg~L~gigftmsL~Ia~laf~~ 352 (388)
T 1zcd_A 328 IMVVGILCGIGFTMSIFIASLAFGS 352 (388)
T ss_dssp GTTHHHHTTCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhccchHHHHHHHHHhccC
Confidence 5676777888887777777777653
No 5
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=8.70 E-value=1.4e+02 Score=19.22 Aligned_cols=11 Identities=55% Similarity=1.253 Sum_probs=7.5
Q ss_pred HHHHHHhcchh
Q 015164 258 LAGFIIGLVPL 268 (412)
Q Consensus 258 i~giiVgliPp 268 (412)
+.|++.|+||-
T Consensus 6 L~GIVlGlipv 16 (37)
T 1q90_G 6 LCGIVLGLVPV 16 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhHHHhhHHH
Confidence 56777777773
No 6
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.82 E-value=4.1e+02 Score=20.79 Aligned_cols=20 Identities=0% Similarity=0.019 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHhhHhhhhh
Q 015164 144 YGLAYVSLSMAVGAIYLWSY 163 (412)
Q Consensus 144 rg~aY~~~~~~~g~i~~ws~ 163 (412)
.+..|+..+..+++.+.-..
T Consensus 69 ~a~iyFi~fi~i~~fi~lNL 88 (112)
T 4f4l_A 69 NAWVFFIPFIMLTTFTVLNL 88 (112)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35578888888887766554
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.23 E-value=5.4e+02 Score=17.90 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=24.7
Q ss_pred CCCCCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcC
Q 015164 310 LRGSGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVC 349 (412)
Q Consensus 310 ~~~s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~ 349 (412)
.+..++|++.++..+++=++++.++... ++|.|+.+
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~----LwK~GFFk 40 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLA----MWKVGFFK 40 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHTT
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHH----HHHcCccc
Confidence 3456789999998888888777765544 44555543
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=7.17 E-value=5.4e+02 Score=16.73 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=16.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhc
Q 015164 75 MPFNVLITFLVGSILGWIVVQFT 97 (412)
Q Consensus 75 ipv~~ll~~~ig~~~g~l~~~~~ 97 (412)
+..-....+.+|..+|+++-|+-
T Consensus 9 ~A~i~~~L~LvGla~Gf~LLkiq 31 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFVLLRVE 31 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 33445566788999999988874
No 9
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=6.71 E-value=5.4e+02 Score=16.31 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q 015164 76 PFNVLITFLVGSILGWIVVQFTR 98 (412)
Q Consensus 76 pv~~ll~~~ig~~~g~l~~~~~~ 98 (412)
.+-....+.+|..+|+++-|+-+
T Consensus 9 A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 9 ALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhheeec
Confidence 34455567889999999888753
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=5.44 E-value=7.7e+02 Score=17.11 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHHhhHhcCCcC
Q 015164 313 SGIQKSIVFGIVVARYVALPLVGIVIVKGAVRFGFVC 349 (412)
Q Consensus 313 s~~~~~~iv~i~~~RliilP~igi~iv~~~~k~g~~~ 349 (412)
.++|++.++..+++=++++.++... ++|.|+.+
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~----LwK~GFFK 37 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILA----LWKIGFFK 37 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHH----HHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHH----HHHcCccc
Confidence 4688888888888888777665444 45556554
Done!