Query 015164
Match_columns 412
No_of_seqs 113 out of 256
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 07:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015164.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015164hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 14.0 46 0.0034 19.2 1.9 29 247-275 5-33 (34)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 13.7 40 0.0029 30.7 2.5 84 254-342 6-92 (405)
3 d1q90g_ f.23.26.1 (G:) PetG su 8.2 75 0.0054 17.8 1.3 12 257-268 5-16 (30)
4 d2axtt1 f.23.34.1 (T:1-30) Pho 6.5 1.8E+02 0.013 15.9 2.4 21 145-165 3-23 (30)
5 d1q90m_ f.23.25.1 (M:) PetM su 5.9 2E+02 0.015 16.2 2.5 15 82-96 15-29 (34)
6 d1tm9a_ a.225.1.1 (A:) Hypothe 5.3 2E+02 0.014 21.0 2.8 22 332-353 94-115 (137)
7 d1jb0m_ f.23.19.1 (M:) Subunit 3.7 2.5E+02 0.018 15.6 1.7 13 258-270 9-21 (31)
8 d1tbaa_ a.15.1.1 (A:) TAF(II)2 2.7 1.8E+02 0.013 19.4 0.4 14 34-47 37-50 (67)
9 d1v54l_ f.23.6.1 (L:) Mitochon 2.7 6.3E+02 0.046 15.3 3.7 28 69-96 14-41 (46)
10 d1ldda_ a.4.5.34 (A:) Anaphase 2.5 3.2E+02 0.023 18.5 1.6 12 388-399 7-18 (74)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.99 E-value=46 Score=19.20 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=24.5
Q ss_pred hcccChhHHHHHHHHHHhcchhhHhhhcC
Q 015164 247 KSMFAPSTIGALAGFIIGLVPLIRKSMIG 275 (412)
Q Consensus 247 ~~~~~Pp~ia~i~giiVgliPpLr~lff~ 275 (412)
++|||=-+.+.+.|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 66777789999999999999888887763
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=13.66 E-value=40 Score=30.73 Aligned_cols=84 Identities=15% Similarity=0.092 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcchhhHhhhcCC--CCChhhHHHH-HHHhcCcchhhhhhhcccccccCCCCCCCCcchhhhhHHHHHHH
Q 015164 254 TIGALAGFIIGLVPLIRKSMIGD--SAPLRVIQDS-ASLIGDGAIPTVTLVVGGNLLRGLRGSGIQKSIVFGIVVARYVA 330 (412)
Q Consensus 254 ~ia~i~giiVgliPpLr~lff~~--~~pL~~i~~s-~~~lG~a~VPl~llvLGa~L~~g~~~s~~~~~~iv~i~~~Rlii 330 (412)
.+|.++|+++|..=+ .....+ ..-++++.|. ++.+--..+|++..-+=...++ +++++ .+.+..-++.-+++
T Consensus 6 li~lv~Gi~~G~~~~--~~~~~~~~~~~l~~~g~lFi~lL~m~v~PLIf~sii~gi~~-L~~~~--~gkl~~~ti~~~l~ 80 (405)
T d2nwwa1 6 LIGLILGAIVGLILG--HYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAAS-ISPAR--LGRVGVKIVVYYLL 80 (405)
T ss_dssp HHHHHHHHHHHHHHH--TTTTHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTCS-CTTTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchh--cchHHHHHHHHHHH
Confidence 567777777776411 110000 0112333222 2444445778887666555554 44332 34455556666666
Q ss_pred HHHHHHHHHHhh
Q 015164 331 LPLVGIVIVKGA 342 (412)
Q Consensus 331 lP~igi~iv~~~ 342 (412)
.-++...+-..+
T Consensus 81 tt~iA~~igl~~ 92 (405)
T d2nwwa1 81 TSAFAVTLGIIM 92 (405)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665555544433
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.19 E-value=75 Score=17.82 Aligned_cols=12 Identities=50% Similarity=1.115 Sum_probs=8.6
Q ss_pred HHHHHHHhcchh
Q 015164 257 ALAGFIIGLVPL 268 (412)
Q Consensus 257 ~i~giiVgliPp 268 (412)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356788888884
No 4
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.54 E-value=1.8e+02 Score=15.93 Aligned_cols=21 Identities=14% Similarity=0.486 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHhhHhhhhhcc
Q 015164 145 GLAYVSLSMAVGAIYLWSYVY 165 (412)
Q Consensus 145 g~aY~~~~~~~g~i~~ws~g~ 165 (412)
.++|+.+|.-+-.++.+.+-+
T Consensus 3 ~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHHHh
Confidence 468999998887777776644
No 5
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.92 E-value=2e+02 Score=16.20 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHh
Q 015164 82 TFLVGSILGWIVVQF 96 (412)
Q Consensus 82 ~~~ig~~~g~l~~~~ 96 (412)
.+.+|..+|+++-|+
T Consensus 15 ~tl~glaigfvllrv 29 (34)
T d1q90m_ 15 MTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheee
Confidence 467888888887765
No 6
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=5.32 E-value=2e+02 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhHhcCCcCCCCh
Q 015164 332 PLVGIVIVKGAVRFGFVCSDDL 353 (412)
Q Consensus 332 P~igi~iv~~~~k~g~~~~~Dp 353 (412)
|+|...+.+.++++|++..+++
T Consensus 94 ~aiifci~yflyhf~fl~d~nk 115 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKDNNK 115 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCC
T ss_pred ceehhhHHHHHHHhcccccccH
Confidence 5566677888999999975443
No 7
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=3.65 E-value=2.5e+02 Score=15.57 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=8.9
Q ss_pred HHHHHHhcchhhH
Q 015164 258 LAGFIIGLVPLIR 270 (412)
Q Consensus 258 i~giiVgliPpLr 270 (412)
.++++|+++|-+-
T Consensus 9 ~valvial~pg~l 21 (31)
T d1jb0m_ 9 YVALVIALLPAVL 21 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5677777777654
No 8
>d1tbaa_ a.15.1.1 (A:) TAF(II)230 TBP-binding fragment {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=2.72 E-value=1.8e+02 Score=19.37 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=12.8
Q ss_pred CCCHHHHhhccchh
Q 015164 34 ILGEDARKHINNLV 47 (412)
Q Consensus 34 il~~~~~k~ls~l~ 47 (412)
+||++.+|+++.+.
T Consensus 37 ~lD~E~k~~L~~Ls 50 (67)
T d1tbaa_ 37 GFDAELRENIGSLS 50 (67)
T ss_dssp SCCTTTHHHHTTCT
T ss_pred ccCHHHHHHHHHHh
Confidence 79999999999886
No 9
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.69 E-value=6.3e+02 Score=15.28 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=20.4
Q ss_pred chhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 015164 69 MLKLWFMPFNVLITFLVGSILGWIVVQF 96 (412)
Q Consensus 69 l~~~w~ipv~~ll~~~ig~~~g~l~~~~ 96 (412)
+.+=|-+-.-..++++.|+..-++++|-
T Consensus 14 v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 14 VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 3445656666778888899988888763
No 10
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.54 E-value=3.2e+02 Score=18.53 Aligned_cols=12 Identities=0% Similarity=-0.064 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHH
Q 015164 388 IMLWTYALASVS 399 (412)
Q Consensus 388 ilfw~Y~~~~vs 399 (412)
=-||.|++..++
T Consensus 7 q~~w~yI~gMLt 18 (74)
T d1ldda_ 7 QRSLPFIEGMLT 18 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 357999998876
Done!