BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015165
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EC4|A Chain A, Solution Structure Of The Uas Domain From Human Fas-
Associated Factor 1
Length = 178
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 131 NSGRSGESSTRLASVSAAALEAMEFVAVFERDYGNVKPNF----VSEGFMDALQRSRSVF 186
+SG SGE+ A AL ++F A F YG+ P F + F +A
Sbjct: 2 SSGSSGEN----AENEGDAL--LQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDR 55
Query: 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG----FKMSN--- 239
KLL +YLH + T FC LC E + +++++NF++W + M N
Sbjct: 56 KLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSNRARFLTMCNRHF 115
Query: 240 ---------SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284
+ K ++P ++M + +L ++G + +E++M L +E
Sbjct: 116 GSVVAQTIRTQKTDQFPLFLIIMGKRSSN-EVLNVIQGNTTVDELMMRLMAAME 168
>pdb|2DAM|A Chain A, Solution Structure Of The Novel Identified Uba-Like
Domain In The N-Terminal Of Human Etea Protein
Length = 67
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAI 38
+KL FQ +TG+E D C L+ H+W++E A+
Sbjct: 19 TEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAV 52
>pdb|4G1E|A Chain A, Crystal Structure Of Integrin Alpha V Beta 3 With
Coil-Coiled Tag
Length = 998
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL--CNEVLAAFVNEN 221
K NF E +D L++ ++ + LF+Y SP H G L C E++A +E+
Sbjct: 490 KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDES 546
>pdb|3IJE|A Chain A, Crystal Structure Of The Complete Integrin Alhavbeta3
Ectodomain Plus An Alpha/beta Transmembrane Fragment
Length = 967
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL--CNEVLAAFVNEN 221
K NF E +D L++ ++ + LF+Y SP H G L C E++A +E+
Sbjct: 490 KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDES 546
>pdb|4G1M|A Chain A, Re-Refinement Of Alpha V Beta 3 Structure
Length = 959
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL--CNEVLAAFVNEN 221
K NF E +D L++ ++ + LF+Y SP H G L C E++A +E+
Sbjct: 490 KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDES 546
>pdb|1JV2|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alphavbeta3
pdb|1L5G|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Avb3 In Complex With An Arg-Gly-Asp Ligand
pdb|1M1X|A Chain A, Crystal Structure Of The Extracellular Segment Of Integrin
Alpha Vbeta3 Bound To Mn2+
pdb|1U8C|A Chain A, A Novel Adaptation Of The Integrin Psi Domain Revealed
From Its Crystal Structure
Length = 957
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL--CNEVLAAFVNEN 221
K NF E +D L++ ++ + LF+Y SP H G L C E++A +E+
Sbjct: 490 KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDES 546
>pdb|3E21|A Chain A, Crystal Structure Of Faf-1 Uba Domain
Length = 45
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 8 LAYFQAITGLEDPDLCTEILQAHDWDLELAIS 39
LA FQA TG+E+ D +L+ ++WDL AI+
Sbjct: 9 LADFQACTGIENIDEAITLLEQNNWDLVAAIN 40
>pdb|2DLX|A Chain A, Solution Structure Of The Uas Domain Of Human Ubx Domain-
Containing Protein 7
Length = 153
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 211 NEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVE 267
NE + + E+F+ W + EG + K +P+ +++ P Q++ Q++
Sbjct: 67 NEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLD 123
>pdb|1VDL|A Chain A, Solution Structure Of Rsgi Ruh-013, A Uba Domain In
Mouse Cdna
Length = 80
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 8 LAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN--PPPERQEQTPNT 57
L + ITG+ D + + L+ + +LELA++ T+ N PP+ + P++
Sbjct: 28 LNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKTPPQEETSGPSS 79
>pdb|2LVA|A Chain A, Nmr Solution Structure Of The N-Terminal Domain Of Human
Usp28, Northeast Structural Genomics Consortium Target
Ht8470a
Length = 129
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
Query: 8 LAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS-----------SNPPPERQEQTPN 56
L + ITG++DP E L+A + D+ A+S T + P E + N
Sbjct: 22 LNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKEPSQDTVATEPSEVEGSAAN 81
Query: 57 TQVTANLLSRDGQNRVD 73
+V A ++ N+ D
Sbjct: 82 KEVLAKVIDLTHDNKDD 98
>pdb|1V92|A Chain A, Solution Structure Of The Uba Domain From P47, A Major
Cofactor Of The Aaa Atpase P97
Length = 46
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 6 DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41
D L F A+TG E+ D L++ WDL++A++SF
Sbjct: 7 DALREFVAVTGAEE-DRARFFLESAGWDLQIALASF 41
>pdb|2C46|A Chain A, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|B Chain B, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|C Chain C, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
pdb|2C46|D Chain D, Crystal Structure Of The Human Rna Guanylyltransferase And
5'-Phosphatase
Length = 241
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 22 LCTEILQAHDWDLELAISSFTSSNPP 47
+C +++ DW +E A+++F + PP
Sbjct: 159 ICAFLVEKMDWSIEAAVATFAQARPP 184
>pdb|1I9T|A Chain A, Crystal Structure Of The Oxidized Rna Triphosphatase
Domain Of Mouse Mrna Capping Enzyme
Length = 210
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 22 LCTEILQAHDWDLELAISSFTSSNPP 47
+C +++ DW +E A+++F + PP
Sbjct: 137 ICAFLVEKMDWSIEAAVATFAQARPP 162
>pdb|1I9S|A Chain A, Crystal Structure Of The Rna Triphosphatase Domain Of
Mouse Mrna Capping Enzyme
Length = 210
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 22 LCTEILQAHDWDLELAISSFTSSNPP 47
+C +++ DW +E A+++F + PP
Sbjct: 137 ICAFLVEKMDWSIEAAVATFAQARPP 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,827,755
Number of Sequences: 62578
Number of extensions: 295270
Number of successful extensions: 568
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 14
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)