Query 015165
Match_columns 412
No_of_seqs 260 out of 638
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:43:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1363 Predicted regulator of 100.0 1.8E-39 3.9E-44 332.0 22.3 242 148-411 139-402 (460)
2 cd02990 UAS_FAF1 UAS family, F 100.0 1.6E-32 3.5E-37 238.8 14.0 116 170-286 1-136 (136)
3 cd02991 UAS_ETEA UAS family, E 100.0 9.1E-32 2E-36 229.6 14.6 116 170-286 1-116 (116)
4 smart00594 UAS UAS domain. 99.9 2.9E-27 6.4E-32 203.5 11.7 119 158-279 2-121 (122)
5 cd02958 UAS UAS family; UAS is 99.9 2.4E-23 5.3E-28 176.6 13.9 113 170-285 1-113 (114)
6 KOG2507 Ubiquitin regulatory p 99.4 4E-11 8.6E-16 119.5 20.2 110 169-283 2-111 (506)
7 KOG1364 Predicted ubiquitin re 99.3 3.5E-12 7.5E-17 124.8 5.9 85 169-292 114-198 (356)
8 PF14555 UBA_4: UBA-like domai 99.2 2.2E-11 4.8E-16 85.7 4.0 41 5-46 1-41 (43)
9 PF13899 Thioredoxin_7: Thiore 99.2 1.5E-10 3.3E-15 92.3 9.1 79 173-254 4-82 (82)
10 cd02960 AGR Anterior Gradient 98.9 4.6E-09 1E-13 91.2 9.7 93 168-269 6-99 (130)
11 cd02951 SoxW SoxW family; SoxW 98.9 3E-08 6.6E-13 84.9 12.6 108 175-285 2-121 (125)
12 cd02955 SSP411 TRX domain, SSP 98.8 7.2E-08 1.6E-12 83.4 12.5 80 176-255 5-90 (124)
13 cd02953 DsbDgamma DsbD gamma f 98.7 1.3E-07 2.9E-12 78.2 9.8 100 177-279 2-103 (104)
14 PF13098 Thioredoxin_2: Thiore 98.4 2.1E-07 4.4E-12 77.8 4.2 94 182-279 1-112 (112)
15 COG2143 Thioredoxin-related pr 98.3 5E-06 1.1E-10 73.6 10.3 106 175-284 31-150 (182)
16 PF03190 Thioredox_DsbH: Prote 98.2 1.1E-05 2.4E-10 72.7 10.8 96 159-255 11-112 (163)
17 PRK00293 dipZ thiol:disulfide 98.2 8.9E-06 1.9E-10 87.4 11.8 107 173-282 461-569 (571)
18 cd02959 ERp19 Endoplasmic reti 98.1 7E-06 1.5E-10 70.1 7.2 110 168-284 3-114 (117)
19 cd02950 TxlA TRX-like protein 98.0 6.5E-05 1.4E-09 66.3 11.2 100 180-286 14-113 (142)
20 PF00085 Thioredoxin: Thioredo 97.6 0.00064 1.4E-08 55.0 10.1 95 174-281 8-102 (103)
21 cd02949 TRX_NTR TRX domain, no 97.6 0.0013 2.8E-08 53.7 11.5 86 184-279 11-96 (97)
22 cd02956 ybbN ybbN protein fami 97.5 0.0012 2.6E-08 53.3 10.6 94 174-279 2-95 (96)
23 PRK10996 thioredoxin 2; Provis 97.5 0.0015 3.2E-08 57.4 11.7 95 178-282 44-138 (139)
24 cd02997 PDI_a_PDIR PDIa family 97.5 0.00078 1.7E-08 54.9 9.4 89 182-278 13-103 (104)
25 TIGR01068 thioredoxin thioredo 97.4 0.0025 5.5E-08 51.2 11.0 89 184-282 12-100 (101)
26 cd02985 TRX_CDSP32 TRX family, 97.3 0.0045 9.7E-08 51.2 11.5 91 175-279 6-99 (103)
27 cd03002 PDI_a_MPD1_like PDI fa 97.3 0.0021 4.5E-08 53.0 9.5 102 172-279 7-108 (109)
28 TIGR00385 dsbE periplasmic pro 97.2 0.0021 4.5E-08 58.3 9.3 92 183-284 60-172 (173)
29 cd02948 TRX_NDPK TRX domain, T 97.1 0.0077 1.7E-07 49.6 11.3 90 179-280 10-100 (102)
30 cd02961 PDI_a_family Protein D 97.1 0.004 8.6E-08 49.5 9.2 91 178-277 7-99 (101)
31 cd02984 TRX_PICOT TRX domain, 97.1 0.0047 1E-07 49.7 9.6 93 174-279 4-96 (97)
32 cd02947 TRX_family TRX family; 97.1 0.0066 1.4E-07 47.1 10.1 83 184-279 8-92 (93)
33 cd02963 TRX_DnaJ TRX domain, D 97.0 0.0079 1.7E-07 50.5 10.7 87 184-280 22-109 (111)
34 TIGR01126 pdi_dom protein disu 96.9 0.0071 1.5E-07 48.8 9.2 94 174-281 5-100 (102)
35 cd02993 PDI_a_APS_reductase PD 96.9 0.0074 1.6E-07 50.3 9.2 92 178-277 13-107 (109)
36 cd02996 PDI_a_ERp44 PDIa famil 96.9 0.011 2.4E-07 49.0 10.0 92 174-278 10-107 (108)
37 PRK09381 trxA thioredoxin; Pro 96.9 0.017 3.6E-07 47.8 11.0 89 184-282 19-107 (109)
38 KOG1363 Predicted regulator of 96.8 0.0053 1.1E-07 64.1 8.9 77 260-336 258-335 (460)
39 COG4232 Thiol:disulfide interc 96.7 0.0064 1.4E-07 64.5 9.3 102 176-282 462-567 (569)
40 PHA02278 thioredoxin-like prot 96.7 0.018 4E-07 48.0 10.3 83 183-276 11-98 (103)
41 TIGR02739 TraF type-F conjugat 96.7 0.02 4.4E-07 55.5 11.9 91 187-286 151-251 (256)
42 cd03000 PDI_a_TMX3 PDIa family 96.7 0.012 2.5E-07 48.5 8.9 96 174-281 4-102 (104)
43 cd03003 PDI_a_ERdj5_N PDIa fam 96.6 0.02 4.3E-07 46.7 9.8 90 174-277 10-99 (101)
44 cd03006 PDI_a_EFP1_N PDIa fami 96.6 0.021 4.6E-07 48.4 10.1 96 171-277 15-111 (113)
45 KOG0910 Thioredoxin-like prote 96.5 0.027 5.8E-07 50.1 10.3 102 169-283 44-148 (150)
46 cd02999 PDI_a_ERp44_like PDIa 96.5 0.015 3.3E-07 47.9 8.2 84 183-277 15-98 (100)
47 PRK15412 thiol:disulfide inter 96.5 0.039 8.4E-07 50.6 11.5 93 184-286 66-179 (185)
48 PTZ00051 thioredoxin; Provisio 96.4 0.039 8.6E-07 44.4 10.2 84 177-274 9-94 (98)
49 PRK13703 conjugal pilus assemb 96.4 0.038 8.3E-07 53.3 11.4 93 187-288 144-246 (248)
50 PF03943 TAP_C: TAP C-terminal 96.4 0.0044 9.6E-08 45.1 3.8 42 5-47 1-42 (51)
51 KOG1029 Endocytic adaptor prot 96.3 0.1 2.3E-06 56.7 15.0 25 9-33 23-47 (1118)
52 PRK03147 thiol-disulfide oxido 96.3 0.025 5.4E-07 50.5 8.9 92 184-281 59-170 (173)
53 cd03004 PDI_a_ERdj5_C PDIa fam 96.2 0.055 1.2E-06 44.2 10.2 92 174-277 10-102 (104)
54 cd02957 Phd_like Phosducin (Ph 96.2 0.031 6.6E-07 46.9 8.6 70 186-269 24-95 (113)
55 cd03005 PDI_a_ERp46 PDIa famil 96.2 0.055 1.2E-06 43.7 9.8 89 174-277 9-100 (102)
56 TIGR02740 TraF-like TraF-like 96.2 0.081 1.7E-06 51.8 12.6 92 184-284 164-265 (271)
57 PTZ00443 Thioredoxin domain-co 96.2 0.18 3.8E-06 48.1 14.5 105 172-286 37-142 (224)
58 PF13728 TraF: F plasmid trans 96.2 0.054 1.2E-06 51.2 11.0 85 186-279 120-214 (215)
59 cd03011 TlpA_like_ScsD_MtbDsbE 96.1 0.018 4E-07 48.4 6.9 93 179-278 13-121 (123)
60 cd02995 PDI_a_PDI_a'_C PDIa fa 96.1 0.043 9.3E-07 44.3 8.6 85 184-277 16-102 (104)
61 cd02998 PDI_a_ERp38 PDIa famil 96.0 0.034 7.4E-07 45.0 7.9 87 183-277 15-103 (105)
62 smart00804 TAP_C C-terminal do 96.0 0.012 2.5E-07 44.8 4.4 39 4-43 12-50 (63)
63 KOG0907 Thioredoxin [Posttrans 96.0 0.08 1.7E-06 44.5 9.9 85 174-271 9-95 (106)
64 PF00627 UBA: UBA/TS-N domain; 96.0 0.013 2.8E-07 39.5 4.1 34 4-39 2-35 (37)
65 TIGR01295 PedC_BrcD bacterioci 96.0 0.06 1.3E-06 46.2 9.4 93 174-278 12-119 (122)
66 cd02975 PfPDO_like_N Pyrococcu 95.9 0.17 3.8E-06 42.5 11.9 93 182-283 18-110 (113)
67 cd03001 PDI_a_P5 PDIa family, 95.9 0.11 2.3E-06 42.1 10.1 85 184-277 16-100 (103)
68 cd02994 PDI_a_TMX PDIa family, 95.8 0.1 2.2E-06 42.4 9.8 92 172-280 8-100 (101)
69 KOG2689 Predicted ubiquitin re 95.7 0.23 4.9E-06 48.2 13.0 19 387-409 209-227 (290)
70 PLN00410 U5 snRNP protein, DIM 95.7 0.15 3.2E-06 45.2 11.0 99 175-283 14-120 (142)
71 cd02954 DIM1 Dim1 family; Dim1 95.7 0.075 1.6E-06 45.3 8.6 69 178-254 4-77 (114)
72 cd02989 Phd_like_TxnDC9 Phosdu 95.6 0.15 3.3E-06 43.0 10.4 77 180-269 16-94 (113)
73 cd03065 PDI_b_Calsequestrin_N 95.6 0.18 4E-06 43.2 10.7 99 172-283 16-119 (120)
74 cd02965 HyaE HyaE family; HyaE 95.5 0.16 3.5E-06 43.1 10.0 93 168-277 13-110 (111)
75 COG1331 Highly conserved prote 95.4 0.16 3.5E-06 55.1 12.1 94 161-255 19-118 (667)
76 KOG0163 Myosin class VI heavy 95.1 0.69 1.5E-05 50.6 15.4 11 21-31 513-523 (1259)
77 cd02992 PDI_a_QSOX PDIa family 95.0 0.19 4.1E-06 42.3 9.0 76 173-254 9-87 (114)
78 cd02986 DLP Dim1 family, Dim1- 94.9 0.38 8.2E-06 41.0 10.5 70 174-253 4-76 (114)
79 KOG1029 Endocytic adaptor prot 94.9 0.63 1.4E-05 50.9 14.3 18 275-292 314-331 (1118)
80 cd03010 TlpA_like_DsbE TlpA-li 94.8 0.15 3.2E-06 43.2 7.8 83 182-274 21-125 (127)
81 cd02982 PDI_b'_family Protein 94.7 0.22 4.8E-06 40.3 8.5 87 186-280 12-100 (103)
82 TIGR00424 APS_reduc 5'-adenyly 94.6 0.27 5.8E-06 51.8 10.7 102 171-280 357-460 (463)
83 PTZ00102 disulphide isomerase; 94.4 0.21 4.4E-06 52.2 9.6 98 172-284 39-139 (477)
84 TIGR01130 ER_PDI_fam protein d 94.4 0.2 4.4E-06 51.6 9.4 98 174-284 10-110 (462)
85 cd02966 TlpA_like_family TlpA- 94.4 0.17 3.6E-06 40.7 7.0 80 179-268 12-116 (116)
86 TIGR02738 TrbB type-F conjugat 94.2 0.44 9.6E-06 42.6 9.8 87 187-282 51-152 (153)
87 cd02987 Phd_like_Phd Phosducin 94.0 0.54 1.2E-05 42.9 10.2 82 173-269 71-154 (175)
88 smart00165 UBA Ubiquitin assoc 93.9 0.1 2.2E-06 34.8 4.0 35 5-41 2-36 (37)
89 cd02962 TMX2 TMX2 family; comp 93.8 0.66 1.4E-05 41.5 10.2 83 174-268 37-126 (152)
90 PTZ00062 glutaredoxin; Provisi 93.8 1.3 2.8E-05 41.6 12.5 81 181-283 12-94 (204)
91 cd03009 TryX_like_TryX_NRX Try 93.6 0.42 9E-06 40.7 8.3 66 184-255 16-109 (131)
92 PRK13728 conjugal transfer pro 93.1 1.1 2.5E-05 41.2 10.7 87 190-285 73-173 (181)
93 cd00194 UBA Ubiquitin Associat 93.1 0.18 3.9E-06 33.8 4.2 36 5-42 2-37 (38)
94 PRK14018 trifunctional thiored 92.6 0.84 1.8E-05 48.8 10.3 86 185-280 55-170 (521)
95 PLN02309 5'-adenylylsulfate re 92.6 1 2.2E-05 47.4 10.8 100 174-281 354-455 (457)
96 PF13905 Thioredoxin_8: Thiore 92.5 0.72 1.6E-05 36.7 7.7 67 186-255 1-92 (95)
97 cd02969 PRX_like1 Peroxiredoxi 92.4 0.9 1.9E-05 40.7 9.0 96 185-287 24-156 (171)
98 KOG4351 Uncharacterized conser 92.3 0.039 8.4E-07 52.0 -0.1 45 3-47 22-68 (244)
99 cd02964 TryX_like_family Trypa 92.2 0.88 1.9E-05 39.0 8.4 72 178-255 9-109 (132)
100 cd02952 TRP14_like Human TRX-r 92.2 0.78 1.7E-05 39.4 7.8 63 185-253 20-98 (119)
101 cd02988 Phd_like_VIAF Phosduci 91.9 3.4 7.4E-05 38.3 12.4 68 186-269 102-171 (192)
102 KOG1144 Translation initiation 91.7 0.99 2.1E-05 49.6 9.5 10 276-285 216-225 (1064)
103 TIGR02187 GlrX_arch Glutaredox 91.6 1.9 4.1E-05 40.4 10.6 91 185-283 19-111 (215)
104 KOG2002 TPR-containing nuclear 91.5 3.2 6.9E-05 46.8 13.4 10 171-180 658-667 (1018)
105 cd03012 TlpA_like_DipZ_like Tl 91.4 1.2 2.6E-05 37.7 8.2 77 182-268 19-124 (126)
106 PRK11509 hydrogenase-1 operon 91.4 2.4 5.2E-05 37.1 10.1 88 188-288 36-129 (132)
107 TIGR00411 redox_disulf_1 small 91.1 2.4 5.3E-05 32.5 9.2 79 190-282 3-81 (82)
108 PTZ00102 disulphide isomerase; 90.8 0.78 1.7E-05 47.9 7.8 100 173-284 365-466 (477)
109 KOG4364 Chromatin assembly fac 90.4 5.3 0.00011 43.4 13.3 29 301-329 283-312 (811)
110 KOG2086 Protein tyrosine phosp 90.4 0.12 2.7E-06 52.3 1.3 44 1-45 1-44 (380)
111 PF07946 DUF1682: Protein of u 90.3 4.8 0.0001 40.4 12.6 20 200-220 168-187 (321)
112 KOG3878 Protein involved in ma 90.2 2.5 5.3E-05 42.2 10.0 60 240-300 72-135 (469)
113 PF02845 CUE: CUE domain; Int 89.8 0.5 1.1E-05 32.6 3.6 39 5-43 2-40 (42)
114 PTZ00121 MAEBL; Provisional 89.7 4.3 9.3E-05 47.7 12.6 10 186-195 855-864 (2084)
115 PLN02919 haloacid dehalogenase 89.6 2.2 4.9E-05 49.6 10.8 94 185-288 419-541 (1057)
116 TIGR01130 ER_PDI_fam protein d 89.4 1.8 3.9E-05 44.6 9.1 97 172-281 353-452 (462)
117 COG3118 Thioredoxin domain-con 89.2 4.1 9E-05 40.3 10.8 87 186-285 43-132 (304)
118 KOG0163 Myosin class VI heavy 89.2 10 0.00022 42.0 14.3 14 177-190 739-752 (1259)
119 cd03008 TryX_like_RdCVF Trypar 88.9 1.4 3E-05 39.1 6.7 71 185-255 24-122 (146)
120 TIGR02661 MauD methylamine deh 88.8 5 0.00011 36.8 10.6 64 184-255 72-156 (189)
121 cd03015 PRX_Typ2cys Peroxiredo 88.2 3.6 7.9E-05 36.9 9.2 52 179-232 22-74 (173)
122 KOG2072 Translation initiation 88.1 11 0.00024 42.0 13.9 23 168-190 458-480 (988)
123 smart00546 CUE Domain that may 87.6 1.8 3.9E-05 29.9 5.3 41 4-44 2-42 (43)
124 cd03007 PDI_a_ERp29_N PDIa fam 87.1 8.2 0.00018 32.9 10.1 92 173-280 9-113 (116)
125 PRK10382 alkyl hydroperoxide r 86.8 6 0.00013 36.5 9.9 94 185-280 30-153 (187)
126 PHA02125 thioredoxin-like prot 86.7 3.1 6.8E-05 32.0 6.8 72 189-279 1-73 (75)
127 cd03017 PRX_BCP Peroxiredoxin 86.7 6.6 0.00014 33.3 9.6 37 236-276 91-136 (140)
128 PF15236 CCDC66: Coiled-coil d 86.2 22 0.00047 32.1 12.6 40 300-341 76-115 (157)
129 PRK00247 putative inner membra 86.1 17 0.00036 38.0 13.6 15 207-221 142-156 (429)
130 PF15236 CCDC66: Coiled-coil d 86.0 26 0.00056 31.6 16.8 6 269-274 40-45 (157)
131 KOG4691 Uncharacterized conser 85.4 31 0.00067 32.0 13.4 7 396-402 211-217 (227)
132 KOG4364 Chromatin assembly fac 85.0 9.2 0.0002 41.6 11.1 8 277-284 250-257 (811)
133 COG4942 Membrane-bound metallo 84.8 29 0.00064 36.1 14.4 25 311-335 212-236 (420)
134 cd02967 mauD Methylamine utili 84.8 6 0.00013 32.3 8.1 61 185-248 20-81 (114)
135 TIGR03137 AhpC peroxiredoxin. 84.7 7.2 0.00016 35.7 9.3 47 185-233 30-77 (187)
136 KOG2002 TPR-containing nuclear 83.9 19 0.00041 41.0 13.4 7 270-276 773-779 (1018)
137 PRK15000 peroxidase; Provision 82.9 10 0.00023 35.2 9.7 90 185-280 33-159 (200)
138 PRK13190 putative peroxiredoxi 82.8 8.4 0.00018 35.8 9.0 95 185-281 26-152 (202)
139 PTZ00056 glutathione peroxidas 81.8 22 0.00048 33.0 11.4 39 185-229 38-80 (199)
140 PRK13189 peroxiredoxin; Provis 80.6 9.9 0.00021 36.0 8.7 47 185-233 34-81 (222)
141 PLN02399 phospholipid hydroper 79.5 14 0.0003 35.5 9.4 34 246-283 201-234 (236)
142 cd01659 TRX_superfamily Thiore 79.2 4.2 9.1E-05 27.8 4.5 61 190-254 1-62 (69)
143 KOG2891 Surface glycoprotein [ 77.6 76 0.0016 31.3 13.6 9 34-42 19-27 (445)
144 PLN02412 probable glutathione 77.1 43 0.00094 29.9 11.5 25 260-284 141-165 (167)
145 PTZ00253 tryparedoxin peroxida 76.4 24 0.00051 32.6 9.8 68 163-233 8-82 (199)
146 PRK00522 tpx lipid hydroperoxi 76.3 17 0.00038 32.5 8.6 42 185-232 43-87 (167)
147 PRK09437 bcp thioredoxin-depen 75.2 25 0.00053 30.6 9.2 23 247-273 121-143 (154)
148 KOG4661 Hsp27-ERE-TATA-binding 74.6 47 0.001 35.8 12.1 7 158-164 424-430 (940)
149 TIGR02187 GlrX_arch Glutaredox 74.6 23 0.0005 33.0 9.3 81 185-281 131-214 (215)
150 PF06637 PV-1: PV-1 protein (P 72.8 1.2E+02 0.0026 31.2 14.2 8 274-281 285-292 (442)
151 PTZ00137 2-Cys peroxiredoxin; 72.3 31 0.00067 33.7 9.8 94 185-280 97-222 (261)
152 PF00578 AhpC-TSA: AhpC/TSA fa 71.0 17 0.00037 29.9 6.8 65 185-255 24-118 (124)
153 KOG4661 Hsp27-ERE-TATA-binding 69.6 66 0.0014 34.7 11.8 9 151-159 459-467 (940)
154 PF08534 Redoxin: Redoxin; In 69.6 23 0.00049 30.3 7.5 33 235-271 95-136 (146)
155 PRK06369 nac nascent polypepti 68.7 7.5 0.00016 33.2 4.0 36 4-40 76-111 (115)
156 KOG0908 Thioredoxin-like prote 68.7 35 0.00077 33.2 8.9 65 182-254 17-83 (288)
157 PF13848 Thioredoxin_6: Thiore 68.5 28 0.0006 30.7 8.1 90 182-279 90-182 (184)
158 TIGR00264 alpha-NAC-related pr 68.3 7.9 0.00017 33.1 4.0 35 5-40 79-113 (116)
159 KOG0191 Thioredoxin/protein di 66.5 31 0.00067 35.2 8.9 93 183-285 44-136 (383)
160 cd02973 TRX_GRX_like Thioredox 65.4 35 0.00075 25.0 6.9 56 190-251 3-58 (67)
161 cd03016 PRX_1cys Peroxiredoxin 65.4 47 0.001 30.8 9.1 45 187-233 26-71 (203)
162 TIGR00116 tsf translation elon 64.0 11 0.00024 37.4 4.8 42 1-43 1-42 (290)
163 PRK13191 putative peroxiredoxi 63.9 44 0.00095 31.4 8.7 48 185-234 32-80 (215)
164 PF07946 DUF1682: Protein of u 63.7 38 0.00081 34.0 8.7 45 273-321 234-278 (321)
165 PRK00247 putative inner membra 60.8 1.8E+02 0.0039 30.6 13.1 6 283-288 273-278 (429)
166 TIGR00412 redox_disulf_2 small 60.3 75 0.0016 24.3 8.5 50 191-251 3-55 (76)
167 KOG1731 FAD-dependent sulfhydr 60.0 7.6 0.00016 41.7 3.0 89 190-285 61-155 (606)
168 PF06098 Radial_spoke_3: Radia 58.2 2E+02 0.0044 28.6 12.9 12 304-316 156-167 (291)
169 PF05262 Borrelia_P83: Borreli 57.6 2.2E+02 0.0048 30.4 13.3 39 151-190 105-143 (489)
170 KOG4848 Extracellular matrix-a 56.9 1.4E+02 0.003 27.9 10.1 50 275-325 140-201 (225)
171 KOG2244 Highly conserved prote 56.8 7.4 0.00016 41.5 2.3 86 169-255 96-187 (786)
172 CHL00098 tsf elongation factor 56.2 19 0.0004 33.8 4.6 38 5-43 2-39 (200)
173 PF05262 Borrelia_P83: Borreli 55.9 96 0.0021 33.1 10.3 9 212-220 130-138 (489)
174 cd02983 P5_C P5 family, C-term 55.7 1.3E+02 0.0029 25.8 9.6 66 213-284 48-116 (130)
175 cd00340 GSH_Peroxidase Glutath 55.6 1E+02 0.0022 26.7 9.2 18 185-203 21-38 (152)
176 KOG2756 Predicted Mg2+-depende 53.7 11 0.00023 37.0 2.7 39 7-45 27-65 (349)
177 KOG2357 Uncharacterized conser 53.7 2.2E+02 0.0048 29.6 12.0 22 313-334 379-400 (440)
178 KOG3915 Transcription regulato 53.6 1.3E+02 0.0028 31.8 10.4 16 268-283 497-512 (641)
179 cd03014 PRX_Atyp2cys Peroxired 53.6 45 0.00097 28.4 6.4 43 185-233 25-70 (143)
180 COG1225 Bcp Peroxiredoxin [Pos 53.6 38 0.00082 30.5 6.0 66 164-235 7-78 (157)
181 cd03018 PRX_AhpE_like Peroxire 53.5 32 0.0007 29.4 5.5 16 187-202 29-45 (149)
182 TIGR02540 gpx7 putative glutat 51.6 1.6E+02 0.0035 25.5 10.4 33 245-281 115-151 (153)
183 PRK12332 tsf elongation factor 51.5 23 0.0005 33.1 4.4 42 1-43 1-42 (198)
184 KOG3634 Troponin [Cytoskeleton 51.2 2.4E+02 0.0053 28.5 11.5 6 387-392 178-183 (361)
185 PRK09377 tsf elongation factor 50.8 22 0.00048 35.3 4.4 39 4-43 5-43 (290)
186 PF06972 DUF1296: Protein of u 50.3 43 0.00094 25.1 4.8 40 5-44 6-45 (60)
187 PF06110 DUF953: Eukaryotic pr 49.3 22 0.00047 30.5 3.6 80 175-254 8-98 (119)
188 PRK13599 putative peroxiredoxi 49.2 1.3E+02 0.0029 28.2 9.3 11 245-255 118-128 (215)
189 PRK10877 protein disulfide iso 48.3 1.2E+02 0.0025 28.9 8.9 74 198-280 150-228 (232)
190 PRK09510 tolA cell envelope in 48.2 3.4E+02 0.0073 28.2 17.0 12 269-280 54-65 (387)
191 cd03026 AhpF_NTD_C TRX-GRX-lik 47.4 1.4E+02 0.0031 23.7 8.2 74 189-277 15-88 (89)
192 PRK09174 F0F1 ATP synthase sub 47.3 2.4E+02 0.0053 26.3 15.0 17 311-327 107-123 (204)
193 PLN02316 synthase/transferase 47.2 1.4E+02 0.003 35.0 10.6 17 263-279 234-250 (1036)
194 PF00769 ERM: Ezrin/radixin/mo 46.0 2.8E+02 0.0061 26.7 11.2 10 304-313 40-49 (246)
195 TIGR01069 mutS2 MutS2 family p 45.7 5E+02 0.011 29.4 15.1 13 273-285 496-508 (771)
196 KOG3654 Uncharacterized CH dom 45.0 73 0.0016 33.9 7.2 7 343-349 432-438 (708)
197 cd02971 PRX_family Peroxiredox 44.7 1.8E+02 0.004 24.1 9.1 20 186-205 22-42 (140)
198 PF06637 PV-1: PV-1 protein (P 44.3 1.1E+02 0.0025 31.3 8.2 14 310-323 307-320 (442)
199 PTZ00256 glutathione peroxidas 43.7 2.5E+02 0.0053 25.3 10.3 37 243-283 142-181 (183)
200 TIGR01626 ytfJ_HI0045 conserve 43.7 2.4E+02 0.0051 26.0 9.8 38 236-277 136-174 (184)
201 PRK11657 dsbG disulfide isomer 43.2 2.4E+02 0.0052 27.1 10.3 76 199-279 160-248 (251)
202 KOG2501 Thioredoxin, nucleored 43.2 75 0.0016 28.7 6.2 20 236-255 106-125 (157)
203 PF01216 Calsequestrin: Calseq 42.4 1.3E+02 0.0029 30.6 8.4 101 171-284 40-145 (383)
204 cd02968 SCO SCO (an acronym fo 41.5 1.2E+02 0.0025 25.5 7.1 43 185-230 21-68 (142)
205 PF11547 E3_UbLigase_EDD: E3 u 40.2 85 0.0018 22.6 4.7 40 4-43 9-48 (53)
206 cd03072 PDI_b'_ERp44 PDIb' fam 39.4 1.9E+02 0.004 24.1 7.8 66 213-283 38-108 (111)
207 PF09726 Macoilin: Transmembra 39.0 6E+02 0.013 28.5 13.8 27 273-299 417-443 (697)
208 KOG1150 Predicted molecular ch 38.9 1.1E+02 0.0024 28.8 6.7 22 180-201 68-89 (250)
209 PF02029 Caldesmon: Caldesmon; 38.7 1.1E+02 0.0023 32.8 7.5 10 304-313 264-273 (492)
210 PF09726 Macoilin: Transmembra 38.2 6.2E+02 0.013 28.4 15.0 11 301-311 492-502 (697)
211 KOG2357 Uncharacterized conser 37.0 5.1E+02 0.011 27.1 14.6 7 213-219 284-290 (440)
212 cd02970 PRX_like2 Peroxiredoxi 36.2 1.8E+02 0.0038 24.4 7.5 64 186-254 24-88 (149)
213 PRK06569 F0F1 ATP synthase sub 36.0 3.3E+02 0.0071 24.5 11.5 22 310-331 63-84 (155)
214 KOG2456 Aldehyde dehydrogenase 35.7 34 0.00074 35.5 3.1 46 160-205 334-379 (477)
215 cd03013 PRX5_like Peroxiredoxi 35.0 99 0.0021 27.3 5.8 62 185-248 28-94 (155)
216 KOG0742 AAA+-type ATPase [Post 33.8 6E+02 0.013 27.0 13.2 15 282-296 151-165 (630)
217 PF09831 DUF2058: Uncharacteri 33.8 3.8E+02 0.0083 24.6 10.2 16 390-409 92-107 (177)
218 COG3122 Uncharacterized protei 33.1 4E+02 0.0087 24.7 9.3 17 390-410 128-144 (215)
219 KOG0190 Protein disulfide isom 32.9 1.2E+02 0.0027 32.3 6.9 97 171-281 31-130 (493)
220 COG1422 Predicted membrane pro 32.2 3.1E+02 0.0068 25.7 8.6 17 301-317 79-95 (201)
221 KOG0912 Thiol-disulfide isomer 31.8 1.4E+02 0.003 30.1 6.5 91 186-283 13-106 (375)
222 PRK00409 recombination and DNA 31.7 8.1E+02 0.018 27.8 15.0 96 272-369 500-595 (782)
223 TIGR02196 GlrX_YruB Glutaredox 31.6 1.8E+02 0.0038 20.8 5.9 52 190-251 2-56 (74)
224 PF06212 GRIM-19: GRIM-19 prot 31.1 3.6E+02 0.0078 23.5 8.9 21 305-325 73-93 (130)
225 KOG2803 Choline phosphate cyti 31.1 72 0.0016 32.0 4.4 72 168-239 17-116 (358)
226 PF03765 CRAL_TRIO_N: CRAL/TRI 30.9 59 0.0013 23.3 3.0 23 19-41 30-52 (55)
227 COG1308 EGD2 Transcription fac 30.3 78 0.0017 27.3 4.0 34 6-40 86-119 (122)
228 KOG1071 Mitochondrial translat 30.3 67 0.0015 32.2 4.1 35 4-39 46-80 (340)
229 PRK05441 murQ N-acetylmuramic 30.0 55 0.0012 32.5 3.6 34 10-44 241-274 (299)
230 cd03073 PDI_b'_ERp72_ERp57 PDI 29.9 3E+02 0.0065 22.9 7.6 84 186-279 15-107 (111)
231 COG0264 Tsf Translation elonga 29.4 90 0.0019 31.0 4.8 41 1-42 1-42 (296)
232 PF13192 Thioredoxin_3: Thiore 28.9 2.6E+02 0.0056 21.2 7.3 69 193-279 5-75 (76)
233 PF00462 Glutaredoxin: Glutare 28.8 1.4E+02 0.0029 21.4 4.7 39 213-251 14-55 (60)
234 KOG2689 Predicted ubiquitin re 28.7 5.8E+02 0.013 25.2 10.3 16 270-285 84-99 (290)
235 PF09756 DDRGK: DDRGK domain; 28.2 19 0.00042 33.4 0.0 6 370-375 75-80 (188)
236 COG3064 TolA Membrane protein 28.0 6.5E+02 0.014 25.5 11.7 9 222-230 28-36 (387)
237 PF13904 DUF4207: Domain of un 27.8 5.7E+02 0.012 24.8 12.8 19 358-376 214-232 (264)
238 PRK00304 hypothetical protein; 27.6 1.7E+02 0.0036 23.1 5.1 55 151-209 12-69 (75)
239 PF12037 DUF3523: Domain of un 27.6 6.1E+02 0.013 25.1 15.3 17 280-296 105-121 (276)
240 PF14943 MRP-S26: Mitochondria 27.5 4.8E+02 0.01 23.8 15.1 52 269-321 20-81 (170)
241 KOG0190 Protein disulfide isom 26.9 1.9E+02 0.0042 30.9 7.1 89 181-279 379-469 (493)
242 PF13712 Glyco_tranf_2_5: Glyc 26.4 32 0.0007 32.3 1.2 31 174-207 45-75 (217)
243 PF04309 G3P_antiterm: Glycero 26.3 92 0.002 28.6 4.0 73 172-253 30-102 (175)
244 COG3437 Response regulator con 25.8 7.4E+02 0.016 25.4 11.4 68 186-254 12-98 (360)
245 KOG0388 SNF2 family DNA-depend 25.7 6.3E+02 0.014 28.7 10.6 18 300-317 381-398 (1185)
246 PF09731 Mitofilin: Mitochondr 25.3 8.7E+02 0.019 26.1 17.0 25 271-295 248-272 (582)
247 cd03419 GRX_GRXh_1_2_like Glut 25.2 2.8E+02 0.006 20.7 6.1 50 191-250 3-58 (82)
248 COG3531 Predicted protein-disu 25.2 1.4E+02 0.003 28.1 5.0 47 234-283 163-209 (212)
249 PF12210 Hrs_helical: Hepatocy 24.8 4E+02 0.0087 22.0 10.1 48 272-330 30-77 (96)
250 KOG1924 RhoA GTPase effector D 24.4 1.7E+02 0.0036 33.1 6.1 41 318-367 990-1030(1102)
251 KOG0345 ATP-dependent RNA heli 24.3 2.9E+02 0.0062 29.6 7.5 38 213-250 413-453 (567)
252 PF06936 Selenoprotein_S: Sele 23.7 6E+02 0.013 23.6 10.2 7 287-293 74-80 (190)
253 PRK13454 F0F1 ATP synthase sub 23.3 5.7E+02 0.012 23.2 14.9 16 309-324 83-98 (181)
254 TIGR02794 tolA_full TolA prote 23.1 8E+02 0.017 24.9 11.1 70 295-366 69-138 (346)
255 KOG0191 Thioredoxin/protein di 22.7 2E+02 0.0044 29.2 6.3 93 184-285 160-254 (383)
256 COG1453 Predicted oxidoreducta 22.6 8.7E+02 0.019 25.1 13.8 63 175-242 132-196 (391)
257 KOG2441 mRNA splicing factor/p 22.3 5.4E+02 0.012 26.8 8.9 13 207-219 185-197 (506)
258 cd03020 DsbA_DsbC_DsbG DsbA fa 21.5 3.8E+02 0.0082 24.3 7.3 83 187-278 105-196 (197)
259 PF13778 DUF4174: Domain of un 21.4 4E+02 0.0087 22.4 6.9 43 235-280 67-109 (118)
260 PLN02316 synthase/transferase 21.3 4.8E+02 0.01 30.7 9.3 7 386-392 328-334 (1036)
261 PF07449 HyaE: Hydrogenase-1 e 20.6 5.1E+02 0.011 21.7 7.7 42 225-271 62-103 (107)
262 PF10044 Ret_tiss: Retinal tis 20.2 1.4E+02 0.0031 24.6 3.6 21 302-322 63-83 (95)
263 TIGR00274 N-acetylmuramic acid 20.0 80 0.0017 31.2 2.5 35 9-44 235-269 (291)
No 1
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-39 Score=332.00 Aligned_cols=242 Identities=32% Similarity=0.508 Sum_probs=198.9
Q ss_pred hhHHHHH-HHHHHHHHhCCCCCCCccCCHHHHHHHHH----hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCe
Q 015165 148 AALEAME-FVAVFERDYGNVKPNFVSEGFMDALQRSR----SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENF 222 (412)
Q Consensus 148 ~~~~~~~-F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak----~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nf 222 (412)
+.+++.+ |++.|.++||..||.||.|++..|...|. ..+|+|++|+|++.++++..||.++|||+.|++||+++|
T Consensus 139 p~~~~~~~f~~~f~~ry~~~~p~F~~d~l~~a~~~A~~~~~~~~~~l~~~~~~~~~~~~~~F~~~iL~~e~v~~~l~~~~ 218 (460)
T KOG1363|consen 139 PQGDSRETFVDNFGDRYGSELPSFYTDVLRNAFLEAFDRESEARKLLAIYLHDDKSDDTNVFCGQILCNEAVVDYLRENF 218 (460)
T ss_pred CcchHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHhhhhhhheeeEEecCCCCcccHHHHHHhhhhhHHHHHHHhhce
Confidence 3456656 99999999999999999999888888775 347999999999999999999999999999999999999
Q ss_pred EEEecccCChhHHHHHhhCCCC----------------CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 223 VSWGGSIRASEGFKMSNSLKAS----------------RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 223 V~w~~dv~~~Eg~~va~~l~~~----------------~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
|+|+|||++++++.+++.+++. +||.+.+|.... +..+++..++|..+.++.+..+..+++.+
T Consensus 219 llw~~dvt~~e~~~~~~~~~~r~~~~~~~~~~~~~~~~~fP~~~iv~~~~-~~~Ell~~l~g~~~~~e~~~~~~~~~~~~ 297 (460)
T KOG1363|consen 219 LLWGWDVTESENLLVFNSLLNRSISSPAAVTNKASKSERFPLVRIVIGSR-SPEELLRYLQGVTGVDEEMTLLLVAFEEE 297 (460)
T ss_pred eeecccccCchhhHHHHHHhhcccchhhhhhcchhhcccCchhhhhhcCC-CHHHHHHHHHhcCCchHHHHHHHhhhhhh
Confidence 9999999999999999998888 799999998765 46889999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 287 NPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAA 366 (412)
Q Consensus 287 ~~~L~~~r~er~er~~~R~lreeQD~aY~~SL~~D~ek~~~r~ee~er~~~~~~e~e~~~~e~ee~~~~~~~e~~~~~~~ 366 (412)
.+.+...+.++.+++.+..+++|||.+|+.||++|+.|+.++ ++ +.+++..+.+++++ ++++ .
T Consensus 298 ~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r~~e~----e~-~~e~~r~e~er~~~----------~ee~--e 360 (460)
T KOG1363|consen 298 ERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVREAEA----EQ-AAEEFRLEKERKEE----------EEER--E 360 (460)
T ss_pred hHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HH-hhHHHHHhhhhhhH----------HHHH--H
Confidence 999998888888998888999999999999999999982111 11 11111111111111 1122 2
Q ss_pred HHHHHHHHHhhCCCCCC-CCCCceeEeecceecCCCCcccccccCC
Q 015165 367 LAKMRQEKALSLGAEPE-KGPNVTQVIFFLIFFPLSSMIFPLTFLQ 411 (412)
Q Consensus 367 ~~~~r~~~~~~lp~EP~-~~~~~~~v~~~~~RlP~G~ri~~~~~~~ 411 (412)
..+++.++.+.||+||+ .+.++++|+ ||+|+|+|. .|||++
T Consensus 361 ~~R~~l~~es~lp~EP~a~~~~~~~l~---iR~P~G~r~-~RrF~~ 402 (460)
T KOG1363|consen 361 TARQLLALESSLPPEPSASEEEAITVA---IRLPSGTRL-ERRFLK 402 (460)
T ss_pred HHHHHHhhhccCCCCCCcCcccceeeE---EECCCCCee-eeeeec
Confidence 23457788999999994 468899999 999999999 667765
No 2
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=100.00 E-value=1.6e-32 Score=238.84 Aligned_cols=116 Identities=24% Similarity=0.472 Sum_probs=110.4
Q ss_pred CccCCHHHHHHHH----HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh------------
Q 015165 170 FVSEGFMDALQRS----RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE------------ 233 (412)
Q Consensus 170 F~~gs~~eAl~~A----k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E------------ 233 (412)
||+|||++|++.| +++.|||+||||+|+|++|+.||+++|||++|++||++|||+|||||++++
T Consensus 1 F~~Gs~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~~~~~~fl~~~~~~ 80 (136)
T cd02990 1 FFIGSLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRH 80 (136)
T ss_pred CccCcHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccchhhhhHHHHhhhhh
Confidence 8999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ----HHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 234 ----GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 234 ----g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
++++++.+++++||++++|+++.+ +++|+++++|.++|+++++.|..+++.|
T Consensus 81 ~g~~a~~~~~~~~~~~fP~~avI~~~~~-~~~vl~~i~G~~~~~ell~~L~~~ve~~ 136 (136)
T cd02990 81 FGSVAAQTIRNIKTDQLPAILIIMGKRS-SNEVLNVIQGNTGVDELLMRLIEAMEMF 136 (136)
T ss_pred hhHHHHHHHHhcCcCCCCeEEEEEecCC-ceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 567788899999999999998766 7999999999999999999999998754
No 3
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.98 E-value=9.1e-32 Score=229.61 Aligned_cols=116 Identities=31% Similarity=0.697 Sum_probs=112.2
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
||+|||+||++.||++.|+|+||||+|.|+++..||++||||++|++|||+|||+|++|++++||+++++.|++.+||++
T Consensus 1 ff~gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~ 80 (116)
T cd02991 1 FYQGTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFL 80 (116)
T ss_pred CCcCcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
++|++.++ +++++.+++|..++++|+..|+.+++++
T Consensus 81 ~~l~~~~~-~~~vv~~i~G~~~~~~ll~~L~~~~~~~ 116 (116)
T cd02991 81 AMIMLKDN-RMTIVGRLEGLIQPEDLINRLTFIMDAN 116 (116)
T ss_pred EEEEecCC-ceEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 99998754 7999999999999999999999998764
No 4
>smart00594 UAS UAS domain.
Probab=99.94 E-value=2.9e-27 Score=203.54 Aligned_cols=119 Identities=37% Similarity=0.673 Sum_probs=112.9
Q ss_pred HHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHH
Q 015165 158 VFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKM 237 (412)
Q Consensus 158 ~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~v 237 (412)
.|+++|| |.||.|||++|++.|++++|+++||||+++|.+|..||++||+|++|+++|++|||+|++|++++||+.+
T Consensus 2 ~~~~~~~---~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l 78 (122)
T smart00594 2 LFRPPYG---PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRV 78 (122)
T ss_pred CCCCCCC---CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHH
Confidence 4678898 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCCceEEEEeCCCCc-cceeeeeeecCCCHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQ-RIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~-~~~vl~ri~G~~s~~~ll~~L 279 (412)
++.|+++.||++++|++.++. .+.++.+++|..++++|+..|
T Consensus 79 ~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 79 SQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999999999999999987643 478999999999999999887
No 5
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.90 E-value=2.4e-23 Score=176.63 Aligned_cols=113 Identities=35% Similarity=0.551 Sum_probs=107.5
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
||.|+|++|++.|++++|||+||+|+++|..|+.|++++|+|++|.++|+++||+|.+|++++||.+++..|++..||++
T Consensus 1 f~~gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~ 80 (114)
T cd02958 1 FFQGSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHI 80 (114)
T ss_pred CccCCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
++|++.+ .+++.++.|..++++|++.|..+++.
T Consensus 81 ~~i~~~~---g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 81 AIIDPRT---GEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred EEEeCcc---CcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 9999843 36788899999999999999998865
No 6
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=99.38 E-value=4e-11 Score=119.51 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
.||.|++.+|+..||..++.++|||.++ ..+++.|.|-+|.+..+.+.+.+.||....+..+..+.+++..|++...|+
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs 80 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPS 80 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccc
Confidence 6999999999999999999999999974 678899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+++|+.+ |+.++|+ .|.+++++|.+.|.++.
T Consensus 81 ~ffIg~s-GtpLevi---tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 81 IFFIGFS-GTPLEVI---TGFVTADELASSIEKVW 111 (506)
T ss_pred eeeecCC-CceeEEe---eccccHHHHHHHHHHHH
Confidence 9999974 6667774 69999999998887654
No 7
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=3.5e-12 Score=124.80 Aligned_cols=85 Identities=22% Similarity=0.256 Sum_probs=75.5
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
-+|.|++.+|...|.++.+|++| +.++.||.++...|++...|+
T Consensus 114 i~~~gsld~ak~~a~sk~~wllV------------------------------------~~Dtseg~~~~~Fy~~~~~P~ 157 (356)
T KOG1364|consen 114 ILSHGSLDAAKSTASSKQRWLLV------------------------------------LDDTSEGQPFSAFYHISSLPH 157 (356)
T ss_pred hhhcCChhhhhhcccccceEEEE------------------------------------eeccCCCCchhhheeccCCce
Confidence 45999999999999999999999 566788999999999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhhHHHHH
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNPALLQ 292 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~~~L~~ 292 (412)
+++|++.+|.+|..++ |...++.|+..|+.+|+.....-++
T Consensus 158 i~iiDp~Tge~v~~ws---~vi~~~~fl~~l~~Fi~~~~~d~va 198 (356)
T KOG1364|consen 158 IAIIDPITGERVKRWS---GVIEPEQFLSDLNEFIDSCPHDEVA 198 (356)
T ss_pred EEEECCchhhhhhhhc---cccCHHHHHHHHHHHHhcCCccccc
Confidence 9999999998887765 7778999999999999988776444
No 8
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=99.17 E-value=2.2e-11 Score=85.66 Aligned_cols=41 Identities=34% Similarity=0.724 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
+++|.+|++|||+++ +.|+++|++|+|||+.||..||+.++
T Consensus 1 ~e~i~~F~~iTg~~~-~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 1 DEKIAQFMSITGADE-DVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHHH-SSH-HHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred CHHHHHHHHHHCcCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 579999999999844 99999999999999999999999654
No 9
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.17 E-value=1.5e-10 Score=92.30 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|++|+..|++++|++||++++++|..|..|.+.++.++.|.++++++||++..|+++.++...... ..+|.++++
T Consensus 4 ~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~---~~~P~~~~l 80 (82)
T PF13899_consen 4 SDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR---QGYPTFFFL 80 (82)
T ss_dssp SSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH---CSSSEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC---ccCCEEEEe
Confidence 58999999999999999999999999999999999999999999999999999999988776442222 449999998
Q ss_pred eC
Q 015165 253 MP 254 (412)
Q Consensus 253 ~~ 254 (412)
++
T Consensus 81 dp 82 (82)
T PF13899_consen 81 DP 82 (82)
T ss_dssp ET
T ss_pred CC
Confidence 75
No 10
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.95 E-value=4.6e-09 Score=91.23 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh-HHHHHhhCCCCCC
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE-GFKMSNSLKASRY 246 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E-g~~va~~l~~~~~ 246 (412)
..|.. +|++|+..|++++|++|||+|+++|..|..+-+.++.+++|.++++++||+...++...+ .... ....+
T Consensus 6 i~W~~-~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~----~g~~v 80 (130)
T cd02960 6 IIWVQ-TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP----DGQYV 80 (130)
T ss_pred ccchh-hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc----cCccc
Confidence 45643 899999999999999999999999999999999999999999999999985554443221 1111 12469
Q ss_pred ceEEEEeCCCCccceeeeeeecC
Q 015165 247 PFCAVVMPAANQRIALLQQVEGP 269 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~ 269 (412)
|.++++++. .+++.++.|.
T Consensus 81 PtivFld~~----g~vi~~i~Gy 99 (130)
T cd02960 81 PRIMFVDPS----LTVRADITGR 99 (130)
T ss_pred CeEEEECCC----CCCccccccc
Confidence 999999985 3556666664
No 11
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.88 E-value=3e-08 Score=84.94 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcC-cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh-----------hHHHHHhhCC
Q 015165 175 FMDALQRSRSVF-KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS-----------EGFKMSNSLK 242 (412)
Q Consensus 175 ~~eAl~~Ak~e~-K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~-----------Eg~~va~~l~ 242 (412)
+-++++.|++++ |+++|++++++|..|..+...++.++.+.+.++++|++...|+.+. ....++..|+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~ 81 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR 81 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC
Confidence 568899999999 9999999999999999999999999999999998999999998754 3457888999
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+..+|++.++.+.. ..++.++.|..+.+.|.+.|..+++.
T Consensus 82 v~~~Pt~~~~~~~g---g~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 82 VRFTPTVIFLDPEG---GKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CccccEEEEEcCCC---CceeEEecCCCCHHHHHHHHHHHHhh
Confidence 99999999998741 25677888999988888888877655
No 12
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.81 E-value=7.2e-08 Score=83.37 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH-H----HH-hhCCCCCCceE
Q 015165 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-K----MS-NSLKASRYPFC 249 (412)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~-~----va-~~l~~~~~P~l 249 (412)
++|++.|++++|++||++++++|..|..|.+.++.+++|.++|+++||+...|+++.... + .+ ..|++..+|++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE
Confidence 478999999999999999999999999999999999999999999999999999753322 1 11 14689999999
Q ss_pred EEEeCC
Q 015165 250 AVVMPA 255 (412)
Q Consensus 250 ~lI~~~ 255 (412)
+++.+.
T Consensus 85 vfl~~~ 90 (124)
T cd02955 85 VFLTPD 90 (124)
T ss_pred EEECCC
Confidence 999985
No 13
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.68 E-value=1.3e-07 Score=78.20 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=83.6
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh--HHHHHhhCCCCCCceEEEEeC
Q 015165 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE--GFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 177 eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E--g~~va~~l~~~~~P~l~lI~~ 254 (412)
+++..|.+++|++||++++++|..|..|...++.++.+.+.+++++++...|++..+ ...+++.|++..+|.+.++.+
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 567788899999999999999999999998888889999999889999999986533 567889999999999999975
Q ss_pred CCCccceeeeeeecCCCHHHHHHHH
Q 015165 255 AANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
.+ ..++.++.|..+.++|.+.|
T Consensus 82 -~~--g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 82 -GG--EPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred -CC--CCCCcccccccCHHHHHHHh
Confidence 11 23456778999998877665
No 14
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.43 E-value=2.1e-07 Score=77.80 Aligned_cols=94 Identities=17% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh------------------HHHHHhhCCC
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE------------------GFKMSNSLKA 243 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E------------------g~~va~~l~~ 243 (412)
|+.++|..+||+++++|..|..+-..++.++++..+++.++.+...++.+.. ...++..|++
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 5788999999999999999999999999988999999888988888887654 2357889999
Q ss_pred CCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 244 ~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
..+|.+++++.. ..++.++.|..++++|.+.|
T Consensus 81 ~gtPt~~~~d~~----G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKD----GKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTT----SCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCC----CCEEEEecCCCCHHHHHhhC
Confidence 999999998853 24667789999999998765
No 15
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5e-06 Score=73.57 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--------------HHHHhh
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------FKMSNS 240 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--------------~~va~~ 240 (412)
.-++.+.|..+.|+|++.+-++.|..|+.|.+++...+.+.++|..||.++-.++++++. ..+|..
T Consensus 31 ~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~k 110 (182)
T COG2143 31 VFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQK 110 (182)
T ss_pred hHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHH
Confidence 345667788899999999999999999999999999999999999999999888876542 267889
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|+++.+|.+.+.+..+ ..+..+.|.++|++|+.-|.-+-+
T Consensus 111 f~vrstPtfvFfdk~G----k~Il~lPGY~ppe~Fl~vlkYVa~ 150 (182)
T COG2143 111 FAVRSTPTFVFFDKTG----KTILELPGYMPPEQFLAVLKYVAD 150 (182)
T ss_pred hccccCceEEEEcCCC----CEEEecCCCCCHHHHHHHHHHHHH
Confidence 9999999999999853 346678899999999988865443
No 16
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.23 E-value=1.1e-05 Score=72.71 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=65.6
Q ss_pred HHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH---
Q 015165 159 FERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF--- 235 (412)
Q Consensus 159 f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~--- 235 (412)
|-.++......|+. =..+|++.|+++.|+++|.+..+.|.-|+.+.++++.|++|.++||++||....|..+....
T Consensus 11 yl~~ha~~~V~W~~-w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~ 89 (163)
T PF03190_consen 11 YLRQHAHNPVNWQP-WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKI 89 (163)
T ss_dssp HHHTTTTSSS--B--SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHH
T ss_pred HHHHhccCCCCccc-CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHH
Confidence 33455555557763 33699999999999999999999999999999999999999999999999999998763322
Q ss_pred -HH-H-hhCCCCCCceEEEEeCC
Q 015165 236 -KM-S-NSLKASRYPFCAVVMPA 255 (412)
Q Consensus 236 -~v-a-~~l~~~~~P~l~lI~~~ 255 (412)
+- + ...+...+|..+++.+.
T Consensus 90 y~~~~~~~~~~gGwPl~vfltPd 112 (163)
T PF03190_consen 90 YMNAVQAMSGSGGWPLTVFLTPD 112 (163)
T ss_dssp HHHHHHHHHS---SSEEEEE-TT
T ss_pred HHHHHHHhcCCCCCCceEEECCC
Confidence 11 1 12277899999999984
No 17
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.21 E-value=8.9e-06 Score=87.43 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh--hHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS--EGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~--Eg~~va~~l~~~~~P~l~ 250 (412)
..++++++.|+.++|+++|+++.++|..|+.+...++.+++|.+.++ ++++...|+++. +...+++.|++..+|.+.
T Consensus 461 ~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~ 539 (571)
T PRK00293 461 AELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLGLPTIL 539 (571)
T ss_pred HHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCCCCEEE
Confidence 45789999999999999999999999999999999999999999886 688889999854 566788999999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
++.+. +..+ -..++.|..++++|.+.|+++
T Consensus 540 ~~~~~-G~~i-~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 540 FFDAQ-GQEI-PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred EECCC-CCCc-ccccccCCCCHHHHHHHHHHh
Confidence 99763 2111 136778999999998888653
No 18
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.13 E-value=7e-06 Score=70.09 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCC--
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR-- 245 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~-- 245 (412)
..|. +|++|++.|++++|++||+++.++|..|..+...+...+.+.. ++.+||....|... +. ....|+...
T Consensus 3 i~w~--~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~-~~--~~~~~~~~g~~ 76 (117)
T cd02959 3 IHWV--TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDE-EP--KDEEFSPDGGY 76 (117)
T ss_pred ccce--eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCC-Cc--hhhhcccCCCc
Confidence 3454 6999999999999999999999999999999988776666555 56788887665432 22 223566654
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+|+++++.+. |..+..+....|....+.|.+.|..+++
T Consensus 77 vPt~~f~~~~-Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 77 IPRILFLDPS-GDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred cceEEEECCC-CCCchhhccCCCCccccccCCCHHHHHh
Confidence 9999999874 3223323345566666777666665553
No 19
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.01 E-value=6.5e-05 Score=66.28 Aligned_cols=100 Identities=8% Similarity=-0.064 Sum_probs=75.8
Q ss_pred HHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcc
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~ 259 (412)
+.|...+|+++||+++++|..|..+...+ ..+.+-+...+-|...|++..+...++..|++..+|.+.++...
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l---~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~---- 86 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDV---AKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE---- 86 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHH---HHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC----
Confidence 44567899999999999999999887432 12333333455666777776665678899999999999999753
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 260 IALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 260 ~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
..++.++.|..+.++|...|...+...
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 357888899999888888888777654
No 20
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.61 E-value=0.00064 Score=55.01 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=71.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|++.+.. ..++++||+++++|..|..|... | ..+.+-+..++.+...|.. +...+++.|+++.+|.+.++.
T Consensus 8 ~f~~~i~~---~~~~vvv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~~ 79 (103)
T PF00085_consen 8 NFEKFINE---SDKPVVVYFYAPWCPPCKAFKPI-L--EKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFFK 79 (103)
T ss_dssp THHHHHTT---TSSEEEEEEESTTSHHHHHHHHH-H--HHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEEE
T ss_pred HHHHHHHc---cCCCEEEEEeCCCCCccccccce-e--cccccccccccccchhhhh--ccchhhhccCCCCCCEEEEEE
Confidence 45555544 47999999999999999998732 2 3455555558888888886 446788999999999999887
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
. | ..+.++.|..+.+.|.+.|.+
T Consensus 80 ~--g---~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 80 N--G---KEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp T--T---EEEEEEESSSSHHHHHHHHHH
T ss_pred C--C---cEEEEEECCCCHHHHHHHHHc
Confidence 5 2 334478899999988877753
No 21
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.59 E-value=0.0013 Score=53.68 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=67.6
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
+..|+++||+++++|..|..+...+ +++.+-++.++.+...|+++.. .++..+++..+|++.++.. + .++
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~~~v~~~~id~d~~~--~l~~~~~v~~vPt~~i~~~--g---~~v 80 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPIL---NKVIDEFDGAVHFVEIDIDEDQ--EIAEAAGIMGTPTVQFFKD--K---ELV 80 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCCCH--HHHHHCCCeeccEEEEEEC--C---eEE
Confidence 4889999999999999999998543 4566666667888888886433 5678899999999999853 3 567
Q ss_pred eeeecCCCHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMIL 279 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L 279 (412)
.++.|..+.++|.+.|
T Consensus 81 ~~~~g~~~~~~~~~~l 96 (97)
T cd02949 81 KEISGVKMKSEYREFI 96 (97)
T ss_pred EEEeCCccHHHHHHhh
Confidence 8899988888876654
No 22
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.52 E-value=0.0012 Score=53.28 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=68.8
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|++.+.. ..+++++|++++++|..|..+...+ +.+.+.++..+.+...|++.. ..++..|++..+|.+.++.
T Consensus 2 ~f~~~i~~--~~~~~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 2 NFQQVLQE--STQVPVVVDFWAPRSPPSKELLPLL---ERLAEEYQGQFVLAKVNCDAQ--PQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred ChHHHHHh--cCCCeEEEEEECCCChHHHHHHHHH---HHHHHHhCCcEEEEEEeccCC--HHHHHHcCCCCCCEEEEEe
Confidence 34555443 3488999999999999999887432 345555555677788887653 4678899999999999996
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
. | .++.+..|..+.+++...|
T Consensus 75 ~--g---~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 75 A--G---QPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred C--C---EEeeeecCCCCHHHHHHHh
Confidence 3 3 3456788988888776554
No 23
>PRK10996 thioredoxin 2; Provisional
Probab=97.52 E-value=0.0015 Score=57.36 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=71.6
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCC
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~ 257 (412)
.++...++.|+++||++.++|..|..+.. +| ..+.+-++.++.+...|+.+. ..++..|++..+|.+.++.. |
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l--~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~V~~~Ptlii~~~--G 116 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IF--EDVAAERSGKVRFVKVNTEAE--RELSARFRIRSIPTIMIFKN--G 116 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCeEEEEEeCCCC--HHHHHhcCCCccCEEEEEEC--C
Confidence 34444567899999999999999999874 44 345555566788888888654 36788999999999877642 3
Q ss_pred ccceeeeeeecCCCHHHHHHHHHHH
Q 015165 258 QRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 258 ~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
.++.++.|..+.+.+.+.|.++
T Consensus 117 ---~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 117 ---QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred ---EEEEEEcCCCCHHHHHHHHHHh
Confidence 4677888999988887777654
No 24
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.51 E-value=0.00078 Score=54.88 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=65.8
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcc
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~ 259 (412)
+.++.++++|++++++|..|..+...+ ..+.+.+. ..+++...|+...+...++..+++..||++.+.-. +
T Consensus 13 ~~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~--g-- 85 (104)
T cd02997 13 FLKKEKHVLVMFYAPWCGHCKKMKPEF---TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFEN--G-- 85 (104)
T ss_pred HHhhCCCEEEEEECCCCHHHHHhCHHH---HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeC--C--
Confidence 334577999999999999999887543 34555555 45778888888766777889999999999766642 3
Q ss_pred ceeeeeeecCCCHHHHHHH
Q 015165 260 IALLQQVEGPKSPEEMLMI 278 (412)
Q Consensus 260 ~~vl~ri~G~~s~~~ll~~ 278 (412)
.++.+..|..+.+.+++.
T Consensus 86 -~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 86 -KFVEKYEGERTAEDIIEF 103 (104)
T ss_pred -CeeEEeCCCCCHHHHHhh
Confidence 235677898888877653
No 25
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.40 E-value=0.0025 Score=51.18 Aligned_cols=89 Identities=12% Similarity=0.041 Sum_probs=66.0
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
...+.++||+++++|..|..+... | ..+.+-++.++.++..|+++.. .+++.|++..+|.+.++.. + .++
T Consensus 12 ~~~~~vvi~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~P~~~~~~~--g---~~~ 81 (101)
T TIGR01068 12 SSDKPVLVDFWAPWCGPCKMIAPI-L--EELAKEYEGKVKFVKLNVDENP--DIAAKYGIRSIPTLLLFKN--G---KEV 81 (101)
T ss_pred hcCCcEEEEEECCCCHHHHHhCHH-H--HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCcCCEEEEEeC--C---cEe
Confidence 456899999999999999988743 3 3455445567888888887654 4578899999999988842 2 345
Q ss_pred eeeecCCCHHHHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ 282 (412)
.+..|..+.+.+...|...
T Consensus 82 ~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 82 DRSVGALPKAALKQLINKN 100 (101)
T ss_pred eeecCCCCHHHHHHHHHhh
Confidence 6677888888877777643
No 26
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.30 E-value=0.0045 Score=51.20 Aligned_cols=91 Identities=11% Similarity=0.139 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh-HHHHHhhCCCCCCceEEE
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE-GFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E-g~~va~~l~~~~~P~l~l 251 (412)
|++++..+ .+|+++|+++.++|..|..+. |.+.++-+ .++.+...|+++.+ ...+++.|++..+|.+.+
T Consensus 6 ~~~~i~~~--~~k~vvv~F~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 6 LDEALKKA--KGRLVVLEFALKHSGPSVKIY------PTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred HHHHHHHc--CCCEEEEEEECCCCHhHHHHh------HHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 45555433 489999999999999999886 44444333 36788888887653 457899999999999776
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
+- .| .++.++.|. .+.++.+.+
T Consensus 78 ~~--~G---~~v~~~~G~-~~~~l~~~~ 99 (103)
T cd02985 78 YK--DG---EKIHEEEGI-GPDELIGDV 99 (103)
T ss_pred Ee--CC---eEEEEEeCC-CHHHHHHHH
Confidence 63 23 457788884 456665554
No 27
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.29 E-value=0.0021 Score=53.01 Aligned_cols=102 Identities=9% Similarity=0.078 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|.+.+. +.+++++|++++++|..|..+... | .++.+-++..+.+...|+...+...++..|++..+|.+.+
T Consensus 7 ~~~~~~~i~---~~~~~~lv~f~a~wC~~C~~~~~~-~--~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 7 PKNFDKVVH---NTNYTTLVEFYAPWCGHCKNLKPE-Y--AKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhhHHHHHh---cCCCeEEEEEECCCCHHHHhhChH-H--HHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEE
Confidence 345665554 457889999999999999988742 2 2344445556677778887766677899999999999999
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
+.........+.....|..+.+.|.+-+
T Consensus 81 ~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 81 FRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EeCCCcccccccccccCccCHHHHHHHh
Confidence 9763210012334567888888776543
No 28
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.20 E-value=0.0021 Score=58.32 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=69.0
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh-H--------------------HHHHhhC
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE-G--------------------FKMSNSL 241 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E-g--------------------~~va~~l 241 (412)
...+|+++||+++++|..|..+. +.+.++-+.++.+++.++.+.. . ..++..|
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~ 133 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDL 133 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhc
Confidence 34689999999999999998875 4455666667777777764321 1 1345567
Q ss_pred CCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 242 KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 242 ~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
++..+|...+|++. ..++.+..|..+.+++.+.|..++.
T Consensus 134 ~v~~~P~~~~id~~----G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 134 GVYGAPETFLVDGN----GVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred CCeeCCeEEEEcCC----ceEEEEEeccCCHHHHHHHHHHHhh
Confidence 88889999999874 3577888899999999888887764
No 29
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.14 E-value=0.0077 Score=49.65 Aligned_cols=90 Identities=8% Similarity=-0.036 Sum_probs=62.5
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCC
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~ 257 (412)
+..+.+..++++||+++++|..|..+.. +| +.+.+-... .+.+...|++++ .++..|++..+|.+.++.. |
T Consensus 10 ~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d~~---~~~~~~~v~~~Pt~~~~~~--g 81 (102)
T cd02948 10 WEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEADTI---DTLKRYRGKCEPTFLFYKN--G 81 (102)
T ss_pred HHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCCCH---HHHHHcCCCcCcEEEEEEC--C
Confidence 3334457899999999999999998874 33 334443332 345666676633 5688999999998777742 2
Q ss_pred ccceeeeeeecCCCHHHHHHHHH
Q 015165 258 QRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 258 ~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
..+.++.|. +++.+.+.|.
T Consensus 82 ---~~~~~~~G~-~~~~~~~~i~ 100 (102)
T cd02948 82 ---ELVAVIRGA-NAPLLNKTIT 100 (102)
T ss_pred ---EEEEEEecC-ChHHHHHHHh
Confidence 567778884 7777766654
No 30
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.12 E-value=0.004 Score=49.52 Aligned_cols=91 Identities=16% Similarity=0.132 Sum_probs=66.4
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH--hcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCC
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV--NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l--~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~ 255 (412)
.+..+.++.+.++|++++++|..|..+... | ..+.+-+ +.++.+...|... ...++..|++..+|.+.++.+.
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPE-Y--EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHH-H--HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCC
Confidence 344555666799999999999999988743 3 3455556 4567777777664 5577889999999999999763
Q ss_pred CCccceeeeeeecCCCHHHHHH
Q 015165 256 ANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 256 ~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
. ..+.+..|..+++++++
T Consensus 82 ~----~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 82 S----KEPVKYEGPRTLESLVE 99 (101)
T ss_pred C----cccccCCCCcCHHHHHh
Confidence 2 34455678888887765
No 31
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.11 E-value=0.0047 Score=49.74 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=65.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
.|++++..+. .|+++|+++.++|..|..+.. +| +.+.+-+..++.+...|+.+ ...++..|++..+|.+.++.
T Consensus 4 ~~~~~~~~~~--~~~v~v~f~~~~C~~C~~~~~-~l--~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 4 EFEELLKSDA--SKLLVLHFWAPWAEPCKQMNQ-VF--EELAKEAFPSVLFLSIEAEE--LPEISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHhhCC--CCEEEEEEECCCCHHHHHHhH-HH--HHHHHHhCCceEEEEEcccc--CHHHHHhcCCccccEEEEEE
Confidence 4555555554 699999999999999998874 33 33444345578888888763 34578889999999988885
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
. | .++.++.|. +++++.+.+
T Consensus 77 ~--g---~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 77 N--G---TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred C--C---EEEEEEeCC-CHHHHHHhh
Confidence 3 3 467778885 455555443
No 32
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.10 E-value=0.0066 Score=47.14 Aligned_cols=83 Identities=14% Similarity=0.107 Sum_probs=60.7
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH--hcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV--NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l--~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
.+.++++|++++++|..|..+.. .+.++. ..++.+...|+.. .-.++..|++..+|.+.++.. + .
T Consensus 8 ~~~~~~ll~~~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~--g---~ 74 (93)
T cd02947 8 KSAKPVVVDFWAPWCGPCKAIAP------VLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKN--G---K 74 (93)
T ss_pred hcCCcEEEEEECCCChhHHHhhH------HHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEEC--C---E
Confidence 34499999999999999987774 333333 3578888888775 335677899999999988854 2 3
Q ss_pred eeeeeecCCCHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L 279 (412)
++....|..+.+.|...|
T Consensus 75 ~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 75 EVDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEEecCCCHHHHHHHh
Confidence 566778888877766544
No 33
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.05 E-value=0.0079 Score=50.45 Aligned_cols=87 Identities=7% Similarity=-0.049 Sum_probs=64.1
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
..+|+++|++|+++|..|..+... | +++.+-+.. ++.+...|+... ..++..+++..+|.+.++.. | .+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~d~~--~~l~~~~~V~~~Pt~~i~~~--g---~~ 91 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPV-W--KEVIQELEPLGVGIATVNAGHE--RRLARKLGAHSVPAIVGIIN--G---QV 91 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHH-H--HHHHHHHHhcCceEEEEecccc--HHHHHHcCCccCCEEEEEEC--C---EE
Confidence 468999999999999999988743 3 245555543 577777777643 35688999999999888852 2 45
Q ss_pred eeeeecCCCHHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~ 280 (412)
+.+..|..+.+.+.+.|.
T Consensus 92 ~~~~~G~~~~~~l~~~i~ 109 (111)
T cd02963 92 TFYHDSSFTKQHVVDFVR 109 (111)
T ss_pred EEEecCCCCHHHHHHHHh
Confidence 777889888777665554
No 34
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=96.94 E-value=0.0071 Score=48.76 Aligned_cols=94 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
+|++++ .+.+.++|++++++|..|..|. ..| +.+.+-+.. ++.+...|+ .+...++..|++..+|.+++
T Consensus 5 ~~~~~~----~~~~~~~i~f~~~~C~~c~~~~-~~~--~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 5 NFDDIV----LSNKDVLVEFYAPWCGHCKNLA-PEY--EKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKF 75 (102)
T ss_pred hHHHHh----ccCCcEEEEEECCCCHHHHhhC-hHH--HHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEE
Confidence 455554 3799999999999999999885 333 345555554 455555554 34567788999999999998
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+... + . +.+..|..+.++|...|..
T Consensus 76 ~~~~-~--~--~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 76 FPKG-K--K--PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred ecCC-C--c--ceeecCCCCHHHHHHHHHh
Confidence 8863 2 1 3457788888877665543
No 35
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=96.90 E-value=0.0074 Score=50.31 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=65.2
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHh-hCCCCCCceEEEEeCC
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSN-SLKASRYPFCAVVMPA 255 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~-~l~~~~~P~l~lI~~~ 255 (412)
++..+.+.+|++||.+++++|..|..+... | ..+.+.+.. ++.+...|++.. ...++. .+++..||.+.++...
T Consensus 13 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~--~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~~f~~~ 88 (109)
T cd02993 13 ALAKGERRNQSTLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSNVKVAKFNADGE-QREFAKEELQLKSFPTILFFPKN 88 (109)
T ss_pred HHHhhhhcCCCEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCCcCCEEEEEcCC
Confidence 556667888999999999999999999744 4 356666665 588888887652 234554 5899999999988653
Q ss_pred CCccceeeeeeecC-CCHHHHHH
Q 015165 256 ANQRIALLQQVEGP-KSPEEMLM 277 (412)
Q Consensus 256 ~~~~~~vl~ri~G~-~s~~~ll~ 277 (412)
+. ......|. .+++.|++
T Consensus 89 ~~----~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 89 SR----QPIKYPSEQRDVDSLLM 107 (109)
T ss_pred CC----CceeccCCCCCHHHHHh
Confidence 22 12335564 57777654
No 36
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=96.87 E-value=0.011 Score=48.96 Aligned_cols=92 Identities=15% Similarity=0.132 Sum_probs=62.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc------CeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE------NFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~------nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
+|++++ +..++++|++++++|..|..+... | +++.+.+++ ++.+...|++.. ..++..|++..||
T Consensus 10 ~f~~~i----~~~~~vlv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~P 80 (108)
T cd02996 10 NIDDIL----QSAELVLVNFYADWCRFSQMLHPI-F--EEAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINKYP 80 (108)
T ss_pred hHHHHH----hcCCEEEEEEECCCCHHHHhhHHH-H--HHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCcCC
Confidence 455544 557899999999999999998843 3 233333332 366667777654 3688999999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHH
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMI 278 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~ 278 (412)
.+.+.-. |.. +..+..|..+.++|.+.
T Consensus 81 tl~~~~~--g~~--~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 81 TLKLFRN--GMM--MKREYRGQRSVEALAEF 107 (108)
T ss_pred EEEEEeC--CcC--cceecCCCCCHHHHHhh
Confidence 9888743 321 22456788888777653
No 37
>PRK09381 trxA thioredoxin; Provisional
Probab=96.86 E-value=0.017 Score=47.80 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=63.9
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
+..++++|++++++|..|..+...+ +.+.+-+..++.+...|+.... .++..|++.++|.+.++.. | .++
T Consensus 19 ~~~~~vvv~f~~~~C~~C~~~~p~~---~~l~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~--G---~~~ 88 (109)
T PRK09381 19 KADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLFKN--G---EVA 88 (109)
T ss_pred cCCCeEEEEEECCCCHHHHHHhHHH---HHHHHHhCCCcEEEEEECCCCh--hHHHhCCCCcCCEEEEEeC--C---eEE
Confidence 4578999999999999999887322 2344444446677777876543 4577899999999888842 3 456
Q ss_pred eeeecCCCHHHHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ 282 (412)
.+..|..+.+++...|...
T Consensus 89 ~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 89 ATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred EEecCCCCHHHHHHHHHHh
Confidence 6788988887766666543
No 38
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=96.78 E-value=0.0053 Score=64.14 Aligned_cols=77 Identities=36% Similarity=0.415 Sum_probs=47.1
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 260 IALLQQVEGPKSPEEMLMILQKVIEESNPALLQARLDAEE-RRNNMRLREEQDAAYRAALEADQARERQRREEQERLE 336 (412)
Q Consensus 260 ~~vl~ri~G~~s~~~ll~~L~~~ie~~~~~L~~~r~er~e-r~~~R~lreeQD~aY~~SL~~D~ek~~~r~ee~er~~ 336 (412)
+-.+..+.|..++.+++..|+.+++-++........-+.+ +...+.++++.++++...++++|+.+.+...++.+.+
T Consensus 258 fP~~~iv~~~~~~~Ell~~l~g~~~~~e~~~~~~~~~~~~~~~~q~~~~~~~er~~r~~~~~eQd~eyq~sle~Dr~r 335 (460)
T KOG1363|consen 258 FPLVRIVIGSRSPEELLRYLQGVTGVDEEMTLLLVAFEEEERRLQMRRSEQDEREARLALEQEQDDEYQASLEADRVR 335 (460)
T ss_pred CchhhhhhcCCCHHHHHHHHHhcCCchHHHHHHHhhhhhhhHHHhhcccchhHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4444445566689999999998887776655443333323 3333355555566666666666677777666555543
No 39
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.75 E-value=0.0064 Score=64.52 Aligned_cols=102 Identities=11% Similarity=0.100 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCc--EEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--HHHHhhCCCCCCceEEE
Q 015165 176 MDALQRSRSVFK--LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--FKMSNSLKASRYPFCAV 251 (412)
Q Consensus 176 ~eAl~~Ak~e~K--~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--~~va~~l~~~~~P~l~l 251 (412)
...++.+..+.| +++|.++.|+|..|+.|.+.+++++.|..-+. |+|+...|+|..++ ...-..|++-.-|.+.+
T Consensus 462 ~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~f 540 (569)
T COG4232 462 LAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKRLGVFGVPTYLF 540 (569)
T ss_pred HHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEE
Confidence 336777766666 99999999999999999999999887765544 89999999996554 45567899999999999
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
..+..+ ...+ +.|.++.+.|++.|+++
T Consensus 541 f~~~g~-e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 541 FGPQGS-EPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred ECCCCC-cCcC---CcceecHHHHHHHHHHh
Confidence 987543 3333 56899999999998754
No 40
>PHA02278 thioredoxin-like protein
Probab=96.75 E-value=0.018 Score=47.97 Aligned_cols=83 Identities=12% Similarity=0.044 Sum_probs=61.1
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChh--HHHHHhhCCCCCCceEEEEeCCCC
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASE--GFKMSNSLKASRYPFCAVVMPAAN 257 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~E--g~~va~~l~~~~~P~l~lI~~~~~ 257 (412)
.++.++++||++.++|..|..+. |.+-++-. .+.-+...|++..+ ...++..|++...|.+++.-.
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~------p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~--- 81 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILK------SVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKD--- 81 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHH------HHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEEC---
Confidence 35889999999999999999887 33333322 23346777776432 455899999999999887764
Q ss_pred ccceeeeeeecCCCHHHHH
Q 015165 258 QRIALLQQVEGPKSPEEML 276 (412)
Q Consensus 258 ~~~~vl~ri~G~~s~~~ll 276 (412)
.+.+.++.|..+.+.+.
T Consensus 82 --G~~v~~~~G~~~~~~l~ 98 (103)
T PHA02278 82 --GQLVKKYEDQVTPMQLQ 98 (103)
T ss_pred --CEEEEEEeCCCCHHHHH
Confidence 26778899988877753
No 41
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.72 E-value=0.02 Score=55.50 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=70.3
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh--hH-------HHHHhhCCCCCCceEEEEeCCC
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS--EG-------FKMSNSLKASRYPFCAVVMPAA 256 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~--Eg-------~~va~~l~~~~~P~l~lI~~~~ 256 (412)
+|.|||++...|..|+.|. +-|..|-+. ++-+.+.+++-. .+ -..+..++++.+|.+++|.+.+
T Consensus 151 ~~gL~fFy~~~C~~C~~~a------pil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMA------PVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred ceeEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 5899999999999998887 555566665 677777777532 11 3457789999999999999876
Q ss_pred CccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 257 NQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 257 ~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
+ .+..|+ .|.+|.++|++++..+...|
T Consensus 225 ~-~~~pv~--~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 225 Q-KMSPLA--YGFISQDELKERILNVLTQF 251 (256)
T ss_pred C-cEEEEe--eccCCHHHHHHHHHHHHhcc
Confidence 5 444454 59999999999999888776
No 42
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=96.71 E-value=0.012 Score=48.53 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=67.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.|+++++.+++ .+..+|+++.++|..|..+.. +|. .+.+-++. ++.+...|+... -.+++.+++..+|.+.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAY--SSIASEFGVRGYPTIK 77 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccC--HhHHhhcCCccccEEE
Confidence 46677777654 678999999999999998884 342 44444432 466666777542 2567889999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
++.. +. +.+..|..+.+++...++.
T Consensus 78 l~~~--~~----~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 78 LLKG--DL----AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred EEcC--CC----ceeecCCCCHHHHHHHHHh
Confidence 9843 21 2346788888887766654
No 43
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=96.64 E-value=0.02 Score=46.73 Aligned_cols=90 Identities=17% Similarity=0.130 Sum_probs=64.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|++.+ .+.++.+|++++++|..|..+.. +| ..+.+-++.++.+...|++.. -.++..+++..||.+.++-
T Consensus 10 ~f~~~v----~~~~~~~v~f~a~wC~~C~~~~p-~~--~~~a~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 10 DFDAAV----NSGEIWFVNFYSPRCSHCHDLAP-TW--REFAKEMDGVIRIGAVNCGDD--RMLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred hHHHHh----cCCCeEEEEEECCCChHHHHhHH-HH--HHHHHHhcCceEEEEEeCCcc--HHHHHHcCCCccCEEEEEc
Confidence 455444 35599999999999999998873 33 244555556778888888754 3578899999999988774
Q ss_pred CCCCccceeeeeeecCCCHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
. |. .+.+..|..+.+.|.+
T Consensus 81 ~--g~---~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 81 S--GM---NPEKYYGDRSKESLVK 99 (101)
T ss_pred C--CC---CcccCCCCCCHHHHHh
Confidence 2 32 2456778888776653
No 44
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=96.63 E-value=0.021 Score=48.45 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=69.0
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHH-hhCCCCCCceE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMS-NSLKASRYPFC 249 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va-~~l~~~~~P~l 249 (412)
-..+|.++... .++.+++||.++.++|..|+.+.- +| +++.+.++.++.+...|++... .++ ..|++..||.+
T Consensus 15 ~~~~f~~~~~v-~~~~~~vlV~FyA~WC~~Ck~l~p-~~--~~la~~~~~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl 88 (113)
T cd03006 15 YKGQLDYAEEL-RTDAEVSLVMYYAPWDAQSQAARQ-EF--EQVAQKLSDQVLFVAINCWWPQ--GKCRKQKHFFYFPVI 88 (113)
T ss_pred chhhhHHHHhc-ccCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCeEEEEEECCCCh--HHHHHhcCCcccCEE
Confidence 34566666443 678899999999999999998873 33 3555555667778888887554 355 58999999998
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
.+.-. |. ...+..|..+.+.++.
T Consensus 89 ~lf~~--g~---~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 89 HLYYR--SR---GPIEYKGPMRAPYMEK 111 (113)
T ss_pred EEEEC--Cc---cceEEeCCCCHHHHHh
Confidence 88843 22 1345679888888765
No 45
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.027 Score=50.10 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=75.9
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCCCCC
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASR 245 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~ 245 (412)
.|-.-+..+--+.-.+..++++|-+|.++|..|..+. |-+-++.. +.|-++..|++ +.-.++..|++..
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~------P~l~~~~~~~~g~~k~~kvdtD--~~~ela~~Y~I~a 115 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLG------PILEELVSEYAGKFKLYKVDTD--EHPELAEDYEISA 115 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhh------HHHHHHHHhhcCeEEEEEEccc--cccchHhhcceee
Confidence 3333455555556678889999999999999999766 44444444 36888888876 4457899999999
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+|.++++.. | +...++.|..+.+.+.+.+..++
T Consensus 116 vPtvlvfkn--G---e~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 116 VPTVLVFKN--G---EKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred eeEEEEEEC--C---EEeeeecccCCHHHHHHHHHHHh
Confidence 999998875 2 45577889999888777776655
No 46
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.50 E-value=0.015 Score=47.93 Aligned_cols=84 Identities=7% Similarity=0.032 Sum_probs=59.8
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
...+|.++|+++.++|..|..+.. .| +++.+... ++.+...|..+ +...++..|++..||.+.++.. + .
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p-~l--~~la~~~~-~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~--g----~ 83 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRP-HF--NALSSMFP-QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNS--T----P 83 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhH-HH--HHHHHHhc-cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcC--C----c
Confidence 467999999999999999998872 22 23333333 45566666642 2346788999999999999864 2 3
Q ss_pred eeeeecCCCHHHHHH
Q 015165 263 LQQVEGPKSPEEMLM 277 (412)
Q Consensus 263 l~ri~G~~s~~~ll~ 277 (412)
+.+..|..+.+.+.+
T Consensus 84 ~~~~~G~~~~~~l~~ 98 (100)
T cd02999 84 RVRYNGTRTLDSLAA 98 (100)
T ss_pred eeEecCCCCHHHHHh
Confidence 457889888877654
No 47
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=96.46 E-value=0.039 Score=50.64 Aligned_cols=93 Identities=11% Similarity=0.043 Sum_probs=67.8
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh-h-HH-------------------HHHhhCC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS-E-GF-------------------KMSNSLK 242 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~-E-g~-------------------~va~~l~ 242 (412)
..+|+++|++..++|..|.... +.+.++-+.++.+++.++++. + .. .++..|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~------p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3689999999999999998876 345555555777777776442 2 11 2344678
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
+..+|...+|++. ..|+.+..|..+.+++-..+...+...
T Consensus 140 v~~~P~t~vid~~----G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 140 VYGAPETFLIDGN----GIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred CCcCCeEEEECCC----ceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 8899999999874 357788889999888877777776543
No 48
>PTZ00051 thioredoxin; Provisional
Probab=96.43 E-value=0.039 Score=44.42 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=58.2
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeC
Q 015165 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 177 eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
+.+....++.+.++|++++++|..|..|.. .+.++-++ ++.+...|+. +...++..|++..+|.+.++..
T Consensus 9 ~~~~~~~~~~~~vli~f~~~~C~~C~~~~~------~l~~l~~~~~~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 9 AEFESTLSQNELVIVDFYAEWCGPCKRIAP------FYEECSKEYTKMVFVKVDVD--ELSEVAEKENITSMPTFKVFKN 80 (98)
T ss_pred HHHHHHHhcCCeEEEEEECCCCHHHHHHhH------HHHHHHHHcCCcEEEEEECc--chHHHHHHCCCceeeEEEEEeC
Confidence 445556678899999999999999998873 23333222 4666666665 4457889999999999766632
Q ss_pred CCCccceeeeeeecCCCHHH
Q 015165 255 AANQRIALLQQVEGPKSPEE 274 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ 274 (412)
| .++.++.|. .+++
T Consensus 81 --g---~~~~~~~G~-~~~~ 94 (98)
T PTZ00051 81 --G---SVVDTLLGA-NDEA 94 (98)
T ss_pred --C---eEEEEEeCC-CHHH
Confidence 2 456777785 4444
No 49
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.39 E-value=0.038 Score=53.34 Aligned_cols=93 Identities=13% Similarity=0.199 Sum_probs=69.8
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCC---hh------HHHHHhhCCCCCCceEEEEeCCC
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA---SE------GFKMSNSLKASRYPFCAVVMPAA 256 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~---~E------g~~va~~l~~~~~P~l~lI~~~~ 256 (412)
+|.|||++...|..|+.|. +-|..|-+. ++-+.+.+++- ++ .-..+..+++..+|.++||.+.+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~a------Pil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLA------QVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred cceEEEEECCCCchhHHHH------HHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 4889999999999999998 555666665 67777777752 11 11234679999999999999865
Q ss_pred CccceeeeeeecCCCHHHHHHHHHHHHHhhhH
Q 015165 257 NQRIALLQQVEGPKSPEEMLMILQKVIEESNP 288 (412)
Q Consensus 257 ~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~~ 288 (412)
+ .+..|+ .|.+|.++|.+++..+...+.+
T Consensus 218 ~-~~~pv~--~G~iS~deL~~Ri~~v~t~~~~ 246 (248)
T PRK13703 218 G-SVRPLS--YGFITQDDLAKRFLNVSTDFKP 246 (248)
T ss_pred C-cEEEEe--eccCCHHHHHHHHHHHHhccCC
Confidence 4 344554 6999999999999888776644
No 50
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=96.39 E-value=0.0044 Score=45.11 Aligned_cols=42 Identities=21% Similarity=0.467 Sum_probs=35.5
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
++.|.+|...||..- +=|...|+.++||++.|+..|......
T Consensus 1 q~mv~~~s~~Tgmn~-~~s~~CL~~n~Wd~~~A~~~F~~l~~~ 42 (51)
T PF03943_consen 1 QEMVQQFSQQTGMNL-EWSQKCLEENNWDYERALQNFEELKAQ 42 (51)
T ss_dssp HHHHHHHHHHCSS-C-CHHHHHHHHTTT-CCHHHHHHHHCCCT
T ss_pred CHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 478999999999877 789999999999999999999876543
No 51
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.32 E-value=0.1 Score=56.73 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=15.5
Q ss_pred HHHHhhhCCCChHHHHHHHHhCCCC
Q 015165 9 AYFQAITGLEDPDLCTEILQAHDWD 33 (412)
Q Consensus 9 ~~f~~iT~~~~~~~a~~~L~~~~W~ 33 (412)
.+++.+.|+-+-+.|+.++-+++-.
T Consensus 23 ~~Lkp~~gfitg~qArnfflqS~LP 47 (1118)
T KOG1029|consen 23 GQLKPGQGFITGDQARNFFLQSGLP 47 (1118)
T ss_pred hccCCCCCccchHhhhhhHHhcCCC
Confidence 3344444555557899888777744
No 52
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.27 E-value=0.025 Score=50.55 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh--------------------HHHHHhhCCC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE--------------------GFKMSNSLKA 243 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E--------------------g~~va~~l~~ 243 (412)
-.+|+++||+.+++|..|......+ . ....+|-+.++.+++.+++++. ...+.+.|++
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l-~-~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v 136 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYM-N-ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV 136 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHH-H-HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence 3579999999999888887655221 1 1112233335666666665432 2356778999
Q ss_pred CCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 244 SRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 244 ~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
..+|...+|+.. ..++....|..+.+++.+.|..
T Consensus 137 ~~~P~~~lid~~----g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 137 GPLPTTFLIDKD----GKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred CCcCeEEEECCC----CcEEEEEeCCCCHHHHHHHHHH
Confidence 999999999874 3567777899998888777654
No 53
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=96.24 E-value=0.055 Score=44.18 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=62.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|++.+. ...++++|++++++|..|..+.. +| +.+.+-+..++.+...|++.. ..+++.+++..||.+.++.
T Consensus 10 ~f~~~i~---~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~i~~~Pt~~~~~ 81 (104)
T cd03004 10 DFPELVL---NRKEPWLVDFYAPWCGPCQALLP-EL--RKAARALKGKVKVGSVDCQKY--ESLCQQANIRAYPTIRLYP 81 (104)
T ss_pred HHHHHHh---cCCCeEEEEEECCCCHHHHHHHH-HH--HHHHHHhcCCcEEEEEECCch--HHHHHHcCCCcccEEEEEc
Confidence 4554443 45679999999999999998873 22 233333344566777777653 4578899999999998886
Q ss_pred CCCCccceeeeeeecCCC-HHHHHH
Q 015165 254 PAANQRIALLQQVEGPKS-PEEMLM 277 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s-~~~ll~ 277 (412)
.. + ..+.+..|..+ .++|..
T Consensus 82 ~g-~---~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 82 GN-A---SKYHSYNGWHRDADSILE 102 (104)
T ss_pred CC-C---CCceEccCCCCCHHHHHh
Confidence 52 1 23455778776 777654
No 54
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.21 E-value=0.031 Score=46.93 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=50.8
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
.++++|++++++|..|..+. +.+.++..+ +..|...|+... .+++.|++..+|.+.++-. | ..+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~------~~l~~la~~~~~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f~~--G---~~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILD------SHLEELAAKYPETKFVKINAEKA---FLVNYLDIKVLPTLLVYKN--G---ELI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHH------HHHHHHHHHCCCcEEEEEEchhh---HHHHhcCCCcCCEEEEEEC--C---EEE
Confidence 58999999999999999877 333333333 455667777644 8899999999999877754 2 456
Q ss_pred eeeecC
Q 015165 264 QQVEGP 269 (412)
Q Consensus 264 ~ri~G~ 269 (412)
.++.|.
T Consensus 90 ~~~~G~ 95 (113)
T cd02957 90 DNIVGF 95 (113)
T ss_pred EEEecH
Confidence 666663
No 55
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=96.19 E-value=0.055 Score=43.71 Aligned_cols=89 Identities=13% Similarity=0.143 Sum_probs=61.0
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
+|.+++. +. ..+|++++++|..|..+.. +| ..+.+-+.. ++.+...|.+... .++..|++..+|.+.
T Consensus 9 ~f~~~~~----~~-~~lv~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~ 78 (102)
T cd03005 9 NFDHHIA----EG-NHFVKFFAPWCGHCKRLAP-TW--EQLAKKFNNENPSVKIAKVDCTQHR--ELCSEFQVRGYPTLL 78 (102)
T ss_pred HHHHHhh----cC-CEEEEEECCCCHHHHHhCH-HH--HHHHHHHhccCCcEEEEEEECCCCh--hhHhhcCCCcCCEEE
Confidence 4555553 33 3899999999999998863 23 234444433 6777777776443 678889999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
++-. |. .+.+..|..+.+.+.+
T Consensus 79 ~~~~--g~---~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 79 LFKD--GE---KVDKYKGTRDLDSLKE 100 (102)
T ss_pred EEeC--CC---eeeEeeCCCCHHHHHh
Confidence 8843 31 4566789888776544
No 56
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=96.18 E-value=0.081 Score=51.81 Aligned_cols=92 Identities=16% Similarity=0.138 Sum_probs=66.6
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChh---------HHHHHhhCCCCCCceEEEEe
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE---------GFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~E---------g~~va~~l~~~~~P~l~lI~ 253 (412)
-.+|+.||+++.++|..|..+. +.+.++-++ ++.+.+.+++... ...++..|++..+|.++|+.
T Consensus 164 l~~k~~Lv~F~AswCp~C~~~~------P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 164 LAKKSGLFFFFKSDCPYCHQQA------PILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred hcCCeEEEEEECCCCccHHHHh------HHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 3479999999999999999877 555566554 5556666665321 12467899999999999999
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+.++ .+.....|.++.++|...+..+..
T Consensus 238 ~~~~---~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPN---QFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCC---EEEEEEeCCCCHHHHHHHHHHHhc
Confidence 7433 233335699999999888876543
No 57
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.18 E-value=0.18 Score=48.08 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=72.6
Q ss_pred cCCHHHHHHHHH-hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 172 SEGFMDALQRSR-SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 172 ~gs~~eAl~~Ak-~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..+|++.+...+ ...+..+|+++.++|..|..+... | +++.+-+...+.+...|++. ...++..|++..||.+.
T Consensus 37 ~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~~PTl~ 111 (224)
T PTZ00443 37 DKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATR--ALNLAKRFAIKGYPTLL 111 (224)
T ss_pred HHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCcCCEEE
Confidence 445666555443 246788999999999999999843 3 44555555555555566653 34678899999999998
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
++.. | .++....|..+.+++.+.+..-+...
T Consensus 112 ~f~~--G---~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 112 LFDK--G---KMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEC--C---EEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 8873 2 34556678888888877766555433
No 58
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.17 E-value=0.054 Score=51.25 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=63.7
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh---------hHHHHHhhCCCCCCceEEEEeCC
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS---------EGFKMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~---------Eg~~va~~l~~~~~P~l~lI~~~ 255 (412)
.+|.|||++.+.|..|+.|. +-+..|-++ +|-+.+.+++-. ..-.++..|++..+|.++||.+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~------pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQA------PILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hCeEEEEEEcCCCchhHHHH------HHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 68889999999999998887 455555555 677777777521 12346778999999999999986
Q ss_pred CCccceeeeeeecCCCHHHHHHHH
Q 015165 256 ANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 256 ~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
++ .+..|+ .|.+|.++|++++
T Consensus 194 ~~-~~~pv~--~G~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TK-KWYPVS--QGFMSLDELEDRI 214 (215)
T ss_pred CC-eEEEEe--eecCCHHHHHHhh
Confidence 53 455554 6999999998875
No 59
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.13 E-value=0.018 Score=48.40 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=60.0
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcC----------------CChHHHHHHhcCeEEEecccCChhHHHHHhhCC
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL----------------CNEVLAAFVNENFVSWGGSIRASEGFKMSNSLK 242 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL----------------~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~ 242 (412)
+..+...+|..+|++++++|..|..+...+- ..+.+.++++++-+-|.... + +...+++.|+
T Consensus 13 ~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~-d-~~~~~~~~~~ 90 (123)
T cd03011 13 FDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVIN-D-PDGVISARWG 90 (123)
T ss_pred eeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEE-C-CCcHHHHhCC
Confidence 3334445699999999999998887752221 12334444444222222111 1 2245788899
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMI 278 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~ 278 (412)
+..+|.+.||... - ++.++.|..+.+.+.+.
T Consensus 91 i~~~P~~~vid~~----g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 91 VSVTPAIVIVDPG----G-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcccEEEEEcCC----C-eEEEEeccCCHHHHHhh
Confidence 9999999999973 2 67778899999988765
No 60
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=96.06 E-value=0.043 Score=44.34 Aligned_cols=85 Identities=16% Similarity=0.128 Sum_probs=61.5
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
+..+.++|++++++|..|..|...+ ..+.+.+++ ++.+...|.+.. .++..+++..+|.+.++.... . .
T Consensus 16 ~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~---~~~~~~~~~~~Pt~~~~~~~~--~-~ 86 (104)
T cd02995 16 DSDKDVLVEFYAPWCGHCKALAPIY---EELAEKLKGDDNVVIAKMDATAN---DVPSEFVVDGFPTILFFPAGD--K-S 86 (104)
T ss_pred CCCCcEEEEEECCCCHHHHHHhhHH---HHHHHHhcCCCCEEEEEEeCcch---hhhhhccCCCCCEEEEEcCCC--c-C
Confidence 4468999999999999999987444 466666665 688888887654 466778889999998886521 1 1
Q ss_pred eeeeeecCCCHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLM 277 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~ 277 (412)
...+..|..+.+.|++
T Consensus 87 ~~~~~~g~~~~~~l~~ 102 (104)
T cd02995 87 NPIKYEGDRTLEDLIK 102 (104)
T ss_pred CceEccCCcCHHHHHh
Confidence 2334678888777664
No 61
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=96.03 E-value=0.034 Score=44.97 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=60.7
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccc
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~ 260 (412)
.+..|+++|++++++|..|..|.. .| ..+.+.+. .++.+...|.... .-.++..|++..+|.+.++....
T Consensus 15 ~~~~~~~~v~f~a~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~---- 86 (105)
T cd02998 15 GDDKKDVLVEFYAPWCGHCKNLAP-EY--EKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGS---- 86 (105)
T ss_pred cCCCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCC----
Confidence 345679999999999999998853 22 24444444 3578888887653 44678889999999999987532
Q ss_pred eeeeeeecCCCHHHHHH
Q 015165 261 ALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 261 ~vl~ri~G~~s~~~ll~ 277 (412)
.......|..+.++|.+
T Consensus 87 ~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 87 TEPVKYEGGRDLEDLVK 103 (105)
T ss_pred CCccccCCccCHHHHHh
Confidence 12234567777777654
No 62
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=95.99 E-value=0.012 Score=44.84 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
+.++|..|+..||... +=|...|+.+|||++.|+..|-.
T Consensus 12 q~~~v~~~~~~Tgmn~-~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 12 QQEMVQAFSAQTGMNA-EYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 6789999999999777 78999999999999999999976
No 63
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.08 Score=44.46 Aligned_cols=85 Identities=11% Similarity=0.056 Sum_probs=65.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
++......+....|+++|++.+++|..|...- |-+.++-.+ +.+|...|+++ ...+++.+++...|++.+
T Consensus 9 ~~~~~~~~~~~~~kliVvdF~a~wCgPCk~i~------P~~~~La~~y~~v~Flkvdvde--~~~~~~~~~V~~~PTf~f 80 (106)
T KOG0907|consen 9 DLDLVLSAAEAGDKLVVVDFYATWCGPCKAIA------PKFEKLAEKYPDVVFLKVDVDE--LEEVAKEFNVKAMPTFVF 80 (106)
T ss_pred hHHHHHHHhhCCCCeEEEEEECCCCcchhhhh------hHHHHHHHHCCCCEEEEEeccc--CHhHHHhcCceEeeEEEE
Confidence 45566666677789999999999999998665 555565554 68899999998 888899999999999998
Q ss_pred EeCCCCccceeeeeeecCCC
Q 015165 252 VMPAANQRIALLQQVEGPKS 271 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s 271 (412)
+-. | ..+.++.|...
T Consensus 81 ~k~--g---~~~~~~vGa~~ 95 (106)
T KOG0907|consen 81 YKG--G---EEVDEVVGANK 95 (106)
T ss_pred EEC--C---EEEEEEecCCH
Confidence 854 2 34555666443
No 64
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=95.96 E-value=0.013 Score=39.52 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHh
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS 39 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~ 39 (412)
.+++|.+.+++ |++. +.|+..|..++||++.|+.
T Consensus 2 ~~~~v~~L~~m-Gf~~-~~~~~AL~~~~~nve~A~~ 35 (37)
T PF00627_consen 2 DEEKVQQLMEM-GFSR-EQAREALRACNGNVERAVD 35 (37)
T ss_dssp HHHHHHHHHHH-TS-H-HHHHHHHHHTTTSHHHHHH
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHH
Confidence 46889999999 9988 7999999999999999986
No 65
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.96 E-value=0.06 Score=46.20 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=61.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChh---------HHHHHhhCC-
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE---------GFKMSNSLK- 242 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~E---------g~~va~~l~- 242 (412)
+..+..+ .-+.++..+||++.++|++|..|. |.+.++.++ +.-++..|++... -..+...++
T Consensus 12 t~~~~~~-~i~~~~~~iv~f~~~~Cp~C~~~~------P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 12 TVVRALE-ALDKKETATFFIGRKTCPYCRKFS------GTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred CHHHHHH-HHHcCCcEEEEEECCCChhHHHHh------HHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4444333 335678899999999999999988 666777765 4557777776322 123345554
Q ss_pred ---CCCCceEEEEeCCCCccceeeeeeecC-CCHHHHHHH
Q 015165 243 ---ASRYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMI 278 (412)
Q Consensus 243 ---~~~~P~l~lI~~~~~~~~~vl~ri~G~-~s~~~ll~~ 278 (412)
+...|.++++-. .+.+.++.|. .+.++|.+-
T Consensus 85 ~~~i~~~PT~v~~k~-----Gk~v~~~~G~~~~~~~l~~~ 119 (122)
T TIGR01295 85 PTSFMGTPTFVHITD-----GKQVSVRCGSSTTAQELQDI 119 (122)
T ss_pred cccCCCCCEEEEEeC-----CeEEEEEeCCCCCHHHHHHH
Confidence 445999997764 2466778884 456665443
No 66
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.92 E-value=0.17 Score=42.55 Aligned_cols=93 Identities=10% Similarity=0.030 Sum_probs=62.3
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
+-+..+.++||++.++|..|..+- .+| +++.+.. ..+-+...|+.. ...++..|++.+.|.+.+.... +....
T Consensus 18 ~l~~~~~vvv~f~a~wC~~C~~~~-~~l--~~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g-~~~~~ 90 (113)
T cd02975 18 EMKNPVDLVVFSSKEGCQYCEVTK-QLL--EELSELS-DKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDG-GKDGG 90 (113)
T ss_pred HhCCCeEEEEEeCCCCCCChHHHH-HHH--HHHHHhc-CceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCC-eecce
Confidence 345667799999999999999666 233 2233222 345566677664 4578899999999999988642 11112
Q ss_pred eeeeeecCCCHHHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+ +..|..+..+|.+.|..++
T Consensus 91 ~--~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 91 I--RYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred E--EEEecCchHHHHHHHHHHH
Confidence 2 5678888888777776655
No 67
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=95.87 E-value=0.11 Score=42.08 Aligned_cols=85 Identities=8% Similarity=0.033 Sum_probs=58.1
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
+..++++|++++++|..|..|... | ..+.+-+...+.+...|+.+ .-.++..|++..+|.+.++.... ...
T Consensus 16 ~~~~~vlv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~~----~~~ 86 (103)
T cd03001 16 NSDDVWLVEFYAPWCGHCKNLAPE-W--KKAAKALKGIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAGK----NSP 86 (103)
T ss_pred cCCCcEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCceEEEEECcc--hHHHHHHCCCCccCEEEEECCCC----cce
Confidence 456789999999999999988632 2 23333344456666666653 34678899999999999886531 123
Q ss_pred eeeecCCCHHHHHH
Q 015165 264 QQVEGPKSPEEMLM 277 (412)
Q Consensus 264 ~ri~G~~s~~~ll~ 277 (412)
....|..+.+.|.+
T Consensus 87 ~~~~g~~~~~~l~~ 100 (103)
T cd03001 87 QDYQGGRTAKAIVS 100 (103)
T ss_pred eecCCCCCHHHHHH
Confidence 34668888777654
No 68
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=95.82 E-value=0.1 Score=42.39 Aligned_cols=92 Identities=11% Similarity=0.190 Sum_probs=62.6
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..+|++++ .+++ +|+++.++|..|..+... | +.+.+..+. ++.+...|+.+.. .++..|++..||.+.
T Consensus 8 ~~~f~~~~-----~~~~-lv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~v~~~~vd~~~~~--~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 8 DSNWTLVL-----EGEW-MIEFYAPWCPACQQLQPE-W--EEFADWSDDLGINVAKVDVTQEP--GLSGRFFVTALPTIY 76 (101)
T ss_pred hhhHHHHh-----CCCE-EEEEECCCCHHHHHHhHH-H--HHHHHhhccCCeEEEEEEccCCH--hHHHHcCCcccCEEE
Confidence 34566654 2344 699999999999988743 3 234443433 5778888877544 467899999999998
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
++ . .| . + .+..|..+.++|.+.|.
T Consensus 77 ~~-~-~g-~--~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HA-K-DG-V--F-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred Ee-C-CC-C--E-EEecCCCCHHHHHHHHh
Confidence 76 3 23 2 2 56789888887766553
No 69
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.23 Score=48.16 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.5
Q ss_pred CceeEeecceecCCCCccccccc
Q 015165 387 NVTQVIFFLIFFPLSSMIFPLTF 409 (412)
Q Consensus 387 ~~~~v~~~~~RlP~G~ri~~~~~ 409 (412)
..|++. ||||||..+ +-||
T Consensus 209 s~crlQ---iRl~DG~Tl-~~tF 227 (290)
T KOG2689|consen 209 SQCRLQ---IRLPDGQTL-TQTF 227 (290)
T ss_pred cceEEE---EEcCCCCee-eeec
Confidence 568888 999999866 6666
No 70
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.73 E-value=0.15 Score=45.16 Aligned_cols=99 Identities=12% Similarity=0.066 Sum_probs=66.9
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeC
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
|.+++.. .+.|+++|.++.++|..|..+- .+| +++.+-+.+...++.+||++. -.++..|++...|.++++..
T Consensus 14 ~d~~I~~--~~~~lVVvdF~A~WCgpCk~m~-p~l--~~la~~~~~~~~~~kVDVDe~--~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 14 VDQAILA--EEERLVVIRFGHDWDETCMQMD-EVL--ASVAETIKNFAVIYLVDITEV--PDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred HHHHHHh--cCCCEEEEEEECCCChhHHHHH-HHH--HHHHHHcCCceEEEEEECCCC--HHHHHHcCccCCCcEEEEEE
Confidence 4444443 3689999999999999998766 333 234443444466799999844 47889999997766665554
Q ss_pred CCCccceeeeeeec--------CCCHHHHHHHHHHHH
Q 015165 255 AANQRIALLQQVEG--------PKSPEEMLMILQKVI 283 (412)
Q Consensus 255 ~~~~~~~vl~ri~G--------~~s~~~ll~~L~~~i 283 (412)
. + .+ .+.+..| ..+.++|+..+..++
T Consensus 87 ~-g-~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 87 N-K-HI-MIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred C-C-eE-EEEEecccccccccccCCHHHHHHHHHHHH
Confidence 2 2 23 5667777 567777777776554
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=95.68 E-value=0.075 Score=45.30 Aligned_cols=69 Identities=14% Similarity=0.056 Sum_probs=51.4
Q ss_pred HHHHHHh--cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 178 ALQRSRS--VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 178 Al~~Ak~--e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
+++.+-. ..++++|+++.++|..|..+. |.+-++-. +...|+.+|+... -.++..|++...|.++++
T Consensus 4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~------P~le~la~~~~~~v~f~kVDvD~~--~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMD------EVLAKIAEDVSNFAVIYLVDIDEV--PDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHhccCCCEEEEEEECCCChhHHHHH------HHHHHHHHHccCceEEEEEECCCC--HHHHHHcCCCCCCEEEEE
Confidence 3444433 688999999999999999776 33334433 3356888898754 478899999999999888
Q ss_pred eC
Q 015165 253 MP 254 (412)
Q Consensus 253 ~~ 254 (412)
-.
T Consensus 76 k~ 77 (114)
T cd02954 76 FR 77 (114)
T ss_pred EC
Confidence 64
No 72
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=95.64 E-value=0.15 Score=42.96 Aligned_cols=77 Identities=6% Similarity=-0.018 Sum_probs=54.3
Q ss_pred HHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCC
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~ 257 (412)
..+.++.+.++||+++++|..|..+. +.+.++.++ ++.++..|++. ...+++.|++...|.++++-. |
T Consensus 16 ~~~i~~~~~vvV~f~a~~c~~C~~~~------p~l~~la~~~~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~--G 85 (113)
T cd02989 16 FEIVKSSERVVCHFYHPEFFRCKIMD------KHLEILAKKHLETKFIKVNAEK--APFLVEKLNIKVLPTVILFKN--G 85 (113)
T ss_pred HHHHhCCCcEEEEEECCCCccHHHHH------HHHHHHHHHcCCCEEEEEEccc--CHHHHHHCCCccCCEEEEEEC--C
Confidence 33334568999999999999999776 333344433 56777777765 336889999999999887764 2
Q ss_pred ccceeeeeeecC
Q 015165 258 QRIALLQQVEGP 269 (412)
Q Consensus 258 ~~~~vl~ri~G~ 269 (412)
.++.++.|.
T Consensus 86 ---~~v~~~~g~ 94 (113)
T cd02989 86 ---KTVDRIVGF 94 (113)
T ss_pred ---EEEEEEECc
Confidence 455566664
No 73
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=95.56 E-value=0.18 Score=43.25 Aligned_cols=99 Identities=12% Similarity=0.125 Sum_probs=67.1
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCCh---HH-HHHHh-cCeEEEecccCChhHHHHHhhCCCCCC
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNE---VL-AAFVN-ENFVSWGGSIRASEGFKMSNSLKASRY 246 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~---~v-~~~l~-~nfV~w~~dv~~~Eg~~va~~l~~~~~ 246 (412)
..+|++.+ ++..++++|+....+|.. .-|+.....| ++ .+++. .++.+...|++.. ..+|..|++..+
T Consensus 16 ~~nF~~~v---~~~~~~vvv~f~a~wc~p--~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~--~~La~~~~I~~i 88 (120)
T cd03065 16 EKNYKQVL---KKYDVLCLLYHEPVESDK--EAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD--AKVAKKLGLDEE 88 (120)
T ss_pred hhhHHHHH---HhCCceEEEEECCCcCCh--hhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC--HHHHHHcCCccc
Confidence 34555443 345567888888777633 2343333442 33 34553 4688999999844 688999999999
Q ss_pred ceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
|.+.++-. | .++. ..|..+.+.+.+.|...+
T Consensus 89 PTl~lfk~--G---~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 89 DSIYVFKD--D---EVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cEEEEEEC--C---EEEE-eeCCCCHHHHHHHHHHHh
Confidence 99988863 3 2455 789999999988887665
No 74
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=95.52 E-value=0.16 Score=43.07 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=67.7
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCC--CCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCC
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLK 242 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~--~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~ 242 (412)
|..-..+|.+-+ +.+..++|.+|.++ |++|..+. |.+-++.+ +.+.+...|+.+.. .++..|+
T Consensus 13 ~~~~~~~~~~~~----~~~~~~v~~f~~~~~~cp~c~~i~------P~leela~e~~~~v~f~kVdid~~~--~la~~f~ 80 (111)
T cd02965 13 PRVDAATLDDWL----AAGGDLVLLLAGDPVRFPEVLDVA------VVLPELLKAFPGRFRAAVVGRADEQ--ALAARFG 80 (111)
T ss_pred cccccccHHHHH----hCCCCEEEEecCCcccCcchhhhH------hHHHHHHHHCCCcEEEEEEECCCCH--HHHHHcC
Confidence 555667788666 45566788888884 99999766 44444444 34567778877654 8999999
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
+.+.|.++++-. ..++.++.|..+-+++..
T Consensus 81 V~sIPTli~fkd-----Gk~v~~~~G~~~~~e~~~ 110 (111)
T cd02965 81 VLRTPALLFFRD-----GRYVGVLAGIRDWDEYVA 110 (111)
T ss_pred CCcCCEEEEEEC-----CEEEEEEeCccCHHHHhh
Confidence 999999988764 257788889888887653
No 75
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.16 Score=55.08 Aligned_cols=94 Identities=14% Similarity=0.218 Sum_probs=74.3
Q ss_pred HHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC-h--hHH--
Q 015165 161 RDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-S--EGF-- 235 (412)
Q Consensus 161 ~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~-~--Eg~-- 235 (412)
.++-.+-.+||.=+ ++|+..|+++.|++|+=|-...|-=|+.+.+..+.||+|.++||+|||...+|-.+ | +.+
T Consensus 19 ~~ha~nPV~W~pW~-~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym 97 (667)
T COG1331 19 LQHAHNPVDWYPWG-EEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYM 97 (667)
T ss_pred HhccCCCccccccC-HHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHH
Confidence 44434433777544 79999999999999999999999999999999999999999999999999999763 2 222
Q ss_pred HHHhhC-CCCCCceEEEEeCC
Q 015165 236 KMSNSL-KASRYPFCAVVMPA 255 (412)
Q Consensus 236 ~va~~l-~~~~~P~l~lI~~~ 255 (412)
.+++.+ +-...|.-+++.|.
T Consensus 98 ~~~q~~tG~GGWPLtVfLTPd 118 (667)
T COG1331 98 NASQAITGQGGWPLTVFLTPD 118 (667)
T ss_pred HHHHHhccCCCCceeEEECCC
Confidence 233333 45689998888874
No 76
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=95.13 E-value=0.69 Score=50.57 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=7.3
Q ss_pred HHHHHHHHhCC
Q 015165 21 DLCTEILQAHD 31 (412)
Q Consensus 21 ~~a~~~L~~~~ 31 (412)
..|+.+.+.-.
T Consensus 513 qDcIeL~E~K~ 523 (1259)
T KOG0163|consen 513 QDCIELIEAKS 523 (1259)
T ss_pred hhHHHHHHHhc
Confidence 56888776543
No 77
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=94.97 E-value=0.19 Score=42.34 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
.+|++.+. +..|+++|++|+++|..|..|.. +| +.+.+-+.+ .+.+-..|........+++.|++..||.+
T Consensus 9 ~~f~~~i~---~~~~~vvV~f~a~wC~~C~~~~~-~~--~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 9 ASFNSALL---GSPSAWLVEFYASWCGHCRAFAP-TW--KKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTL 82 (114)
T ss_pred HhHHHHHh---cCCCeEEEEEECCCCHHHHHHhH-HH--HHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEE
Confidence 35565554 33589999999999999999874 34 245554543 25555566655566778999999999999
Q ss_pred EEEeC
Q 015165 250 AVVMP 254 (412)
Q Consensus 250 ~lI~~ 254 (412)
.++..
T Consensus 83 ~lf~~ 87 (114)
T cd02992 83 RYFPP 87 (114)
T ss_pred EEECC
Confidence 88865
No 78
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=94.94 E-value=0.38 Score=41.01 Aligned_cols=70 Identities=9% Similarity=0.049 Sum_probs=54.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cC-eEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--EN-FVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~n-fV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+.+++..+ +.|+++|.++.++|..|..+- |-+.++-+ .+ .+|+.+|++ |...++..|++..-|+..
T Consensus 4 ~~d~~i~~~--~~klVVVdF~a~WC~pCk~md------p~l~ela~~~~~~~~f~kVDVD--ev~dva~~y~I~amPtfv 73 (114)
T cd02986 4 EVDQAIKST--AEKVLVLRFGRDEDAVCLQLD------DILSKTSHDLSKMASIYLVDVD--KVPVYTQYFDISYIPSTI 73 (114)
T ss_pred HHHHHHHhc--CCCEEEEEEeCCCChhHHHHH------HHHHHHHHHccCceEEEEEecc--ccHHHHHhcCceeCcEEE
Confidence 466777776 799999999999999998665 33333333 25 889999998 455689999999999988
Q ss_pred EEe
Q 015165 251 VVM 253 (412)
Q Consensus 251 lI~ 253 (412)
++-
T Consensus 74 ffk 76 (114)
T cd02986 74 FFF 76 (114)
T ss_pred EEE
Confidence 775
No 79
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.88 E-value=0.63 Score=50.94 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 015165 275 MLMILQKVIEESNPALLQ 292 (412)
Q Consensus 275 ll~~L~~~ie~~~~~L~~ 292 (412)
|=.+=+.-+++-+.+|..
T Consensus 314 FEDKrkeNy~kGqaELer 331 (1118)
T KOG1029|consen 314 FEDKRKENYEKGQAELER 331 (1118)
T ss_pred hhhhhHHhHhhhhHHHHH
Confidence 333333344444444443
No 80
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=94.76 E-value=0.15 Score=43.24 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=55.1
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh---------------------hHHHHHh
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS---------------------EGFKMSN 239 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~---------------------Eg~~va~ 239 (412)
+.-.+|+++|++.+++|..|..... .+.++-+. ++.+++.++.+. +...++.
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 94 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGI 94 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHH
Confidence 3334899999999999998887663 33333332 244554443211 2235677
Q ss_pred hCCCCCCceEEEEeCCCCccceeeeeeecCCCHHH
Q 015165 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEE 274 (412)
Q Consensus 240 ~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ 274 (412)
.|++..+|...+|+.. ..++.+..|..+.+.
T Consensus 95 ~~~v~~~P~~~~ld~~----G~v~~~~~G~~~~~~ 125 (127)
T cd03010 95 DLGVYGVPETFLIDGD----GIIRYKHVGPLTPEV 125 (127)
T ss_pred hcCCCCCCeEEEECCC----ceEEEEEeccCChHh
Confidence 8999999998888874 257778889887654
No 81
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=94.71 E-value=0.22 Score=40.27 Aligned_cols=87 Identities=11% Similarity=0.068 Sum_probs=58.3
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCC--CCceEEEEeCCCCccceee
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS--RYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~--~~P~l~lI~~~~~~~~~vl 263 (412)
.++++|+++++++.+|..+... | .++.+-.+..+.|...|+.+ ...++..|++. .+|.++++....+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~-~--~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~--- 83 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRER-F--KEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKY--- 83 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHH-H--HHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEeccccccc---
Confidence 6789999999998888877732 2 24555555567676677654 44688899999 9999999987433222
Q ss_pred eeeecCCCHHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~ 280 (412)
....|..+.+.+.+-+.
T Consensus 84 ~~~~~~~~~~~l~~fi~ 100 (103)
T cd02982 84 LMPEEELTAESLEEFVE 100 (103)
T ss_pred CCCccccCHHHHHHHHH
Confidence 23344556666554443
No 82
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=94.60 E-value=0.27 Score=51.76 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=69.0
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
-..+|++.++. ++..+++||+++.++|..|+.+... | +++.+-+.. ++.+...|++..+...+++.|++..||.+
T Consensus 357 ~~~nf~~~v~~-~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi 432 (463)
T TIGR00424 357 SRPGIENLLKL-EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432 (463)
T ss_pred CHHHHHHHHhh-hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence 34457776643 5789999999999999999988743 3 445544443 46677777765443344578999999999
Q ss_pred EEEeCCCCccceeeeeee-cCCCHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVE-GPKSPEEMLMILQ 280 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~-G~~s~~~ll~~L~ 280 (412)
.++-.... . .+ ... |.-+++.|++.++
T Consensus 433 i~Fk~g~~-~-~~--~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 433 LFFPKHSS-R-PI--KYPSEKRDVDSLMSFVN 460 (463)
T ss_pred EEEECCCC-C-ce--eCCCCCCCHHHHHHHHH
Confidence 88875321 1 12 233 4678888776654
No 83
>PTZ00102 disulphide isomerase; Provisional
Probab=94.44 E-value=0.21 Score=52.20 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
..+|++++ ++.++++|++++++|..|..+...+. .+.+.++. ++.+...|.+. ...++..|++..||.
T Consensus 39 ~~~f~~~i----~~~~~~lv~f~a~wC~~Ck~~~p~~~---~~a~~~~~~~~~i~~~~vd~~~--~~~l~~~~~i~~~Pt 109 (477)
T PTZ00102 39 DSTFDKFI----TENEIVLVKFYAPWCGHCKRLAPEYK---KAAKMLKEKKSEIVLASVDATE--EMELAQEFGVRGYPT 109 (477)
T ss_pred hhhHHHHH----hcCCcEEEEEECCCCHHHHHhhHHHH---HHHHHHHhcCCcEEEEEEECCC--CHHHHHhcCCCcccE
Confidence 34455544 45688999999999999998874432 33434432 46676677653 346888999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+.++... + . + +..|..+++.|+..|.....
T Consensus 110 ~~~~~~g-~-~---~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 110 IKFFNKG-N-P---V-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EEEEECC-c-e---E-EecCCCCHHHHHHHHHHhhC
Confidence 9888752 2 2 2 57799999988888876654
No 84
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.42 E-value=0.2 Score=51.64 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=68.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
+|++++ ++.++++|++++++|..|..+.... ..+.+.++. ++.+...|.+. ...++..|++..||.+.
T Consensus 10 ~~~~~i----~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 10 NFDDFI----KSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSGYPTLK 80 (462)
T ss_pred HHHHHH----hcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCccccEEE
Confidence 444444 4688999999999999999888443 334444443 36666666654 35788999999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
++-. |. .. +.+..|..+.+.+.+.+...+.
T Consensus 81 ~~~~--g~-~~-~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 81 IFRN--GE-DS-VSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred EEeC--Cc-cc-eeEecCCCCHHHHHHHHHHhcC
Confidence 8753 21 11 3456788888888777766553
No 85
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=94.39 E-value=0.17 Score=40.68 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=52.6
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCC--hhH------------------
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRA--SEG------------------ 234 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~--~Eg------------------ 234 (412)
+..+.-.+|+++|++++++|..|..+. +.+.++.+ .++.++..+++. .+.
T Consensus 12 ~~~~~~~~k~~ll~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 12 VSLSDLKGKVVLVNFWASWCPPCRAEM------PELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred eehHHcCCCEEEEEeecccChhHHHHh------HHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 344444589999999999998877654 33333332 356677766655 222
Q ss_pred -HHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 235 -FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 235 -~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
..++..|++..+|.+.|+++. ..++.+..|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~----g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRD----GRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECCC----CcEEEEecC
Confidence 456778899999999998874 245554443
No 86
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=94.18 E-value=0.44 Score=42.60 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=57.1
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChh-----------HHHHHhhC---CCCCCceEEE
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE-----------GFKMSNSL---KASRYPFCAV 251 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~E-----------g~~va~~l---~~~~~P~l~l 251 (412)
++.+|++..++|..|.... |.+.++-++ ++.+.+.++++.. +..+...+ ++..+|...+
T Consensus 51 ~~~lvnFWAsWCppCr~e~------P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L 124 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFA------PVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL 124 (153)
T ss_pred CCEEEEEECCCChhHHHHH------HHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence 4459999999999999886 556655544 4444444444321 11123344 7889999999
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
|++.++ .+..+..|.++.+++...+...
T Consensus 125 ID~~G~---~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 125 VNVNTR---KAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EeCCCC---EEEEEeecccCHHHHHHHHHHh
Confidence 998543 3345678999988876666543
No 87
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=94.00 E-value=0.54 Score=42.93 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..|.+++..+. ..++++|+++.++|..|..+. +.+.++..+ ++.|...|+... .++..|++...|.++
T Consensus 71 ~~f~~~v~~~~-~~~~VVV~Fya~wc~~Ck~m~------~~l~~LA~~~~~vkF~kVd~d~~---~l~~~f~v~~vPTll 140 (175)
T cd02987 71 EQFLDAIDKEG-KDTTVVVHIYEPGIPGCAALN------SSLLCLAAEYPAVKFCKIRASAT---GASDEFDTDALPALL 140 (175)
T ss_pred HHHHHHHHhcC-CCcEEEEEEECCCCchHHHHH------HHHHHHHHHCCCeEEEEEeccch---hhHHhCCCCCCCEEE
Confidence 34444443221 235999999999999999776 233333333 577888888753 788999999999988
Q ss_pred EEeCCCCccceeeeeeecC
Q 015165 251 VVMPAANQRIALLQQVEGP 269 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~ 269 (412)
++-. | .++.++.|.
T Consensus 141 lyk~--G---~~v~~~vG~ 154 (175)
T cd02987 141 VYKG--G---ELIGNFVRV 154 (175)
T ss_pred EEEC--C---EEEEEEech
Confidence 7764 2 455555554
No 88
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=93.94 E-value=0.1 Score=34.82 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
.++|+++.++ |++. +.|+..|..++||++.|+.-.
T Consensus 2 ~~~v~~L~~m-Gf~~-~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 2 EEKIDQLLEM-GFSR-EEALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHH
Confidence 4678888887 8888 799999999999999998754
No 89
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=93.83 E-value=0.66 Score=41.48 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=55.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhHHHHHhhCCCCC------C
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSNSLKASR------Y 246 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg~~va~~l~~~~------~ 246 (412)
.|++.+.. ...++++|++++++|..|..+.. +| +++.+-.+ .++.+...|++... .++..|++.. +
T Consensus 37 ~f~~~l~~--~~~~~vvV~Fya~wC~~Ck~l~p-~l--~~la~~~~~~~v~f~~VDvd~~~--~la~~~~V~~~~~v~~~ 109 (152)
T cd02962 37 TLEEELER--DKRVTWLVEFFTTWSPECVNFAP-VF--AELSLKYNNNNLKFGKIDIGRFP--NVAEKFRVSTSPLSKQL 109 (152)
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHcccCCeEEEEEECCCCH--HHHHHcCceecCCcCCC
Confidence 44444432 34689999999999999998873 22 23333333 35888899987654 6788888877 9
Q ss_pred ceEEEEeCCCCccceeeeeeec
Q 015165 247 PFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G 268 (412)
|.+.+... | +.+.++.|
T Consensus 110 PT~ilf~~--G---k~v~r~~G 126 (152)
T cd02962 110 PTIILFQG--G---KEVARRPY 126 (152)
T ss_pred CEEEEEEC--C---EEEEEEec
Confidence 99887753 2 34455554
No 90
>PTZ00062 glutaredoxin; Provisional
Probab=93.79 E-value=1.3 Score=41.64 Aligned_cols=81 Identities=14% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
..+.+....++|+|.++|.+|..+. .+| .++..+ ++.|+..|.. |++...|+++++-.
T Consensus 12 ~i~~~~g~~vl~f~a~w~~~C~~m~-~vl-----~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~---- 71 (204)
T PTZ00062 12 LIESNTGKLVLYVKSSKEPEYEQLM-DVC-----NALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQN---- 71 (204)
T ss_pred HHhcCCCcEEEEEeCCCCcchHHHH-HHH-----HHHHHHCCCcEEEEEccc----------cCcccceEEEEEEC----
Confidence 3343447789999999999999665 333 233332 6777777765 99999999888864
Q ss_pred cceeeeeeecCCCHHHHHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
-+++.++.|. ++.++.+.+....
T Consensus 72 -g~~i~r~~G~-~~~~~~~~~~~~~ 94 (204)
T PTZ00062 72 -SQLINSLEGC-NTSTLVSFIRGWA 94 (204)
T ss_pred -CEEEeeeeCC-CHHHHHHHHHHHc
Confidence 2568888875 4677777665544
No 91
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=93.60 E-value=0.42 Score=40.71 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=45.3
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----c--CeEEEecccCChh----------------------HH
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----E--NFVSWGGSIRASE----------------------GF 235 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~--nfV~w~~dv~~~E----------------------g~ 235 (412)
-.+|++|||+..++|..|.... +.+.++.+ . ++.+++.+++..+ ..
T Consensus 16 ~~gk~vll~Fwa~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T cd03009 16 LEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRS 89 (131)
T ss_pred hCCcEEEEEEECCCChHHHHHh------HHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHH
Confidence 3579999999999999888765 33443322 1 4555555554322 13
Q ss_pred HHHhhCCCCCCceEEEEeCC
Q 015165 236 KMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~ 255 (412)
.++..|++..+|.+.||.+.
T Consensus 90 ~~~~~~~v~~~P~~~lid~~ 109 (131)
T cd03009 90 RLNRTFKIEGIPTLIILDAD 109 (131)
T ss_pred HHHHHcCCCCCCEEEEECCC
Confidence 46778999999999999874
No 92
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.11 E-value=1.1 Score=41.20 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=61.8
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh-----------hHHHHHhhCCC--CCCceEEEEeCC
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS-----------EGFKMSNSLKA--SRYPFCAVVMPA 255 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~-----------Eg~~va~~l~~--~~~P~l~lI~~~ 255 (412)
+|++...+|..|..+. +.+.++-++ +|.+++.+++.. .+..+...|+. ..+|..+||+..
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~ 146 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN 146 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence 6678889999999887 566666655 677777776533 12335667884 699999999985
Q ss_pred CCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 256 ANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 256 ~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+. .+...+.|.++.+++...+...+..
T Consensus 147 G~---i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 147 TL---EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred Cc---EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 32 1223467999999888888776644
No 93
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=93.10 E-value=0.18 Score=33.78 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~ 42 (412)
+++|++++++ |++. +.|+..|..++||++.|+.-.|
T Consensus 2 ~~~v~~L~~m-Gf~~-~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 2 EEKLEQLLEM-GFSR-EEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHh
Confidence 4678888884 8885 8999999999999999997665
No 94
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=92.59 E-value=0.84 Score=48.79 Aligned_cols=86 Identities=15% Similarity=0.089 Sum_probs=59.7
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEeccc--------------------------CChhH
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSI--------------------------RASEG 234 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv--------------------------~~~Eg 234 (412)
.+|+++|++..++|..|.... |.+.++-+ +++.+.+..+ .-...
T Consensus 55 kGKpVvV~FWATWCppCk~em------P~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~ 128 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSEL------GETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG 128 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHH------HHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc
Confidence 689999999999999998876 23333322 1233322211 00123
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
..+++.|++..+|..+||.+. ..++.++.|.++.++|...|.
T Consensus 129 ~~lak~fgV~giPTt~IIDkd----GkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKD----GDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCC----CeEEEEEeCCCCHHHHHHHHH
Confidence 357788999999999999874 367888999999888877776
No 95
>PLN02309 5'-adenylylsulfate reductase
Probab=92.58 E-value=1 Score=47.43 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhHHHHHh-hCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSN-SLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg~~va~-~l~~~~~P~l~l 251 (412)
+|++.+. .+...|.+||+++.++|..|+.+... | +.+.+-+. .++.|...|++..+ ..++. .|++..||.+.+
T Consensus 354 nfe~ll~-~~~~~k~vlV~FyApWC~~Cq~m~p~-~--e~LA~~~~~~~V~f~kVD~d~~~-~~la~~~~~I~~~PTil~ 428 (457)
T PLN02309 354 GIENLLK-LENRKEPWLVVLYAPWCPFCQAMEAS-Y--EELAEKLAGSGVKVAKFRADGDQ-KEFAKQELQLGSFPTILL 428 (457)
T ss_pred HHHHHHH-hhcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCeEEEEEECCCcc-hHHHHhhCCCceeeEEEE
Confidence 4444443 34679999999999999999988743 3 24544444 36888888877222 24554 699999999998
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+..... . . +..-.|.-+.+.|++-+..
T Consensus 429 f~~g~~-~-~-v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 429 FPKNSS-R-P-IKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EeCCCC-C-e-eecCCCCcCHHHHHHHHHH
Confidence 875322 1 1 2111235677777766543
No 96
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=92.49 E-value=0.72 Score=36.74 Aligned_cols=67 Identities=12% Similarity=0.033 Sum_probs=38.4
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCe--EEEecccCChh---------------------HHHHHhh
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENF--VSWGGSIRASE---------------------GFKMSNS 240 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nf--V~w~~dv~~~E---------------------g~~va~~ 240 (412)
+|+++||+.+++|..|..+...+- ++.+-+. .++ |....|-+..+ ...+.+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~---~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLK---ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHH---HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHH---HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 577888888888877777763331 2333344 333 33333321111 2245677
Q ss_pred CCCCCCceEEEEeCC
Q 015165 241 LKASRYPFCAVVMPA 255 (412)
Q Consensus 241 l~~~~~P~l~lI~~~ 255 (412)
|++..+|.++||++.
T Consensus 78 ~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 78 YGINGIPTLVLLDPD 92 (95)
T ss_dssp TT-TSSSEEEEEETT
T ss_pred CCCCcCCEEEEECCC
Confidence 899999999999974
No 97
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=92.40 E-value=0.9 Score=40.69 Aligned_cols=96 Identities=15% Similarity=0.115 Sum_probs=59.8
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccCC--------hhHH-------------------H
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRA--------SEGF-------------------K 236 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~~--------~Eg~-------------------~ 236 (412)
.+|++|||++.++|..|......+ ..+.+-+ +.++.+++.++++ .+.+ .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l---~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRL---NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHH---HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 579999999999998876544322 1223222 2467788877653 2222 3
Q ss_pred HHhhCCCCCCceEEEEeCCCCccceeeeee---------ecCCCHHHHHHHHHHHHHhhh
Q 015165 237 MSNSLKASRYPFCAVVMPAANQRIALLQQV---------EGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 237 va~~l~~~~~P~l~lI~~~~~~~~~vl~ri---------~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++..|++...|.+.||++. | .|+.+. .+..+.+++.+.|..++...+
T Consensus 101 ~~~~~~v~~~P~~~lid~~-G---~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPD-G---KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHHHcCCCcCCcEEEECCC-C---eEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 4567888889999988874 2 233221 123466778888877776543
No 98
>KOG4351 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.27 E-value=0.039 Score=51.99 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhhhCCCCh--HHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 3 DVADKLAYFQAITGLEDP--DLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~--~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
++++.+.+|+.++|..-. +.|+|+|+..+|+|..|++-|||.+.+
T Consensus 22 dr~~Li~qf~~lm~~qm~P~~~aaF~Ld~knW~lqna~sv~~d~~t~ 68 (244)
T KOG4351|consen 22 DRPELIHQFQRLMNTQMNPMLSAAFVLDMKNWNLQNAGSVYWDQDTK 68 (244)
T ss_pred CcHHHHHHHHHHhhhccCcccccceeeeccceeccccccEEEcCCCc
Confidence 578999999999996432 579999999999999999999997753
No 99
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=92.21 E-value=0.88 Score=38.95 Aligned_cols=72 Identities=25% Similarity=0.188 Sum_probs=47.6
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH---hc---CeEEEecccCChh------------------
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV---NE---NFVSWGGSIRASE------------------ 233 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l---~~---nfV~w~~dv~~~E------------------ 233 (412)
-+..+.-.+|.++||+.+++|..|.... +.+.++. .+ ++.+.+.++....
T Consensus 9 ~v~l~~~~Gk~vll~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~ 82 (132)
T cd02964 9 VVPVSALEGKTVGLYFSASWCPPCRAFT------PKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPF 82 (132)
T ss_pred cccHHHhCCCEEEEEEECCCCchHHHHH------HHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeecc
Confidence 3444444689999999999999998765 3333332 22 4544444443321
Q ss_pred -----HHHHHhhCCCCCCceEEEEeCC
Q 015165 234 -----GFKMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 234 -----g~~va~~l~~~~~P~l~lI~~~ 255 (412)
...+++.|++..+|.+.||...
T Consensus 83 ~d~~~~~~~~~~~~v~~iPt~~lid~~ 109 (132)
T cd02964 83 EDEELRELLEKQFKVEGIPTLVVLKPD 109 (132)
T ss_pred CcHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 2345678999999999999864
No 100
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=92.17 E-value=0.78 Score=39.35 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=48.1
Q ss_pred cCcEEEEEEeC-------CCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChh-----HHHHHhhCCCC-CCce
Q 015165 185 VFKLLFVYLHS-------PDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASE-----GFKMSNSLKAS-RYPF 248 (412)
Q Consensus 185 e~K~LlVyLh~-------~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~E-----g~~va~~l~~~-~~P~ 248 (412)
.+++++|+++. ++|.+|..+. |.|.++.++ +..++.+|+.+.. ...++..+++. ..|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~------P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT 93 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAE------PVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPT 93 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhc------hhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCE
Confidence 47899999999 8999988665 444455443 6788999997643 34667788887 9999
Q ss_pred EEEEe
Q 015165 249 CAVVM 253 (412)
Q Consensus 249 l~lI~ 253 (412)
++++.
T Consensus 94 ~~~~~ 98 (119)
T cd02952 94 LLRWK 98 (119)
T ss_pred EEEEc
Confidence 99884
No 101
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.89 E-value=3.4 Score=38.34 Aligned_cols=68 Identities=12% Similarity=-0.020 Sum_probs=47.3
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
.++++|+++.++|..|..+. +.+.++-.+ +..|..+|++. .+..|++...|++++.-. ..++
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~------~~l~~LA~k~~~vkFvkI~ad~-----~~~~~~i~~lPTlliyk~-----G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLN------QHLSELARKFPDTKFVKIISTQ-----CIPNYPDKNLPTILVYRN-----GDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHH------HHHHHHHHHCCCCEEEEEEhHH-----hHhhCCCCCCCEEEEEEC-----CEEE
Confidence 46999999999999999776 223333222 45566777653 257899999999888764 2456
Q ss_pred eeeecC
Q 015165 264 QQVEGP 269 (412)
Q Consensus 264 ~ri~G~ 269 (412)
.++.|.
T Consensus 166 ~~ivG~ 171 (192)
T cd02988 166 KQFIGL 171 (192)
T ss_pred EEEeCc
Confidence 666663
No 102
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=91.67 E-value=0.99 Score=49.62 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.8
Q ss_pred HHHHHHHHHh
Q 015165 276 LMILQKVIEE 285 (412)
Q Consensus 276 l~~L~~~ie~ 285 (412)
+..++.++.+
T Consensus 216 v~~~qe~La~ 225 (1064)
T KOG1144|consen 216 VRAMQEALAK 225 (1064)
T ss_pred HHHHHHHHHH
Confidence 4455555543
No 103
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=91.58 E-value=1.9 Score=40.37 Aligned_cols=91 Identities=10% Similarity=0.027 Sum_probs=58.4
Q ss_pred cCcEEEEEEe--CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 185 VFKLLFVYLH--SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 185 e~K~LlVyLh--~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
..+-+++|.+ .++|..|..+.. +| +++.+... ++-+-..+++..+...++..|++..+|.++++.. |. .+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p-~l--~~la~~~~-~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~--g~--~~ 90 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQ-LL--EELSEVSP-KLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEE--GK--DG 90 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHH-HH--HHHHhhCC-CceEEEEecCCcccHHHHHHcCCCccCEEEEEeC--Ce--ee
Confidence 3455666555 288999997662 32 23332222 3334456666667889999999999999988764 21 22
Q ss_pred eeeeecCCCHHHHHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~i 283 (412)
-.+..|..+.+++.+.|...+
T Consensus 91 ~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 91 GIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred EEEEeecCCHHHHHHHHHHHH
Confidence 236789888887766665443
No 104
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.53 E-value=3.2 Score=46.84 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=7.1
Q ss_pred ccCCHHHHHH
Q 015165 171 VSEGFMDALQ 180 (412)
Q Consensus 171 ~~gs~~eAl~ 180 (412)
..|.|.+|+.
T Consensus 658 ~kg~~~~A~d 667 (1018)
T KOG2002|consen 658 EKGRFSEARD 667 (1018)
T ss_pred hccCchHHHH
Confidence 5677777765
No 105
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=91.41 E-value=1.2 Score=37.74 Aligned_cols=77 Identities=9% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccC------ChhH-----------------
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIR------ASEG----------------- 234 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~------~~Eg----------------- 234 (412)
+.-.+|+++||+.+.+|..|.... +.+.++.+ .++.+++.+.. +.+.
T Consensus 19 ~~~~gk~vvl~F~a~~C~~C~~~~------p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D 92 (126)
T cd03012 19 AQLRGKVVLLDFWTYCCINCLHTL------PYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAND 92 (126)
T ss_pred HHhCCCEEEEEEECCCCccHHHHH------HHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEEC
Confidence 333578999999999998888665 33333333 35667766542 1221
Q ss_pred --HHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 235 --FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 235 --~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
..++..|++..+|...||+.. ..|+.+..|
T Consensus 93 ~~~~~~~~~~v~~~P~~~vid~~----G~v~~~~~G 124 (126)
T cd03012 93 NDYATWRAYGNQYWPALYLIDPT----GNVRHVHFG 124 (126)
T ss_pred CchHHHHHhCCCcCCeEEEECCC----CcEEEEEec
Confidence 134456788889988888864 245555555
No 106
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=91.36 E-value=2.4 Score=37.07 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=62.0
Q ss_pred EEEEEEeCCC-----CCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 188 LLFVYLHSPD-----HPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 188 ~LlVyLh~~~-----~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
..+|+|-++- ..|....+ +++.+-+.. ++.+...|+... -.++..|++..+|.++++-. ..
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvl------eELa~e~~~~~v~~akVDiD~~--~~LA~~fgV~siPTLl~Fkd-----Gk 102 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMI------GELLREFPDYTWQVAIADLEQS--EAIGDRFGVFRFPATLVFTG-----GN 102 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHH------HHHHHHhcCCceEEEEEECCCC--HHHHHHcCCccCCEEEEEEC-----CE
Confidence 4567776633 23333222 344444442 477888888744 57889999999999888765 36
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHhhhH
Q 015165 262 LLQQVEGPKSPEEMLMILQKVIEESNP 288 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~ie~~~~ 288 (412)
.++++.|..+-+++++.|...+++-.+
T Consensus 103 ~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 103 YRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 788899999999999999998877544
No 107
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=91.14 E-value=2.4 Score=32.47 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=51.8
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecC
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGP 269 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~ 269 (412)
++.+++++|..|..... .| +.+.+-.+.++-+...|+++. ...+..+++..+|.+.+ .+ . .++.|.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l--~~l~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~vPt~~~-~g----~----~~~~G~ 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR-VV--EEVAKEMGDAVEVEYINVMEN--PQKAMEYGIMAVPAIVI-NG----D----VEFIGA 68 (82)
T ss_pred EEEEECCCCcchHHHHH-HH--HHHHHHhcCceEEEEEeCccC--HHHHHHcCCccCCEEEE-CC----E----EEEecC
Confidence 45677899999987772 22 122222334566777777543 35677899999999874 22 1 156798
Q ss_pred CCHHHHHHHHHHH
Q 015165 270 KSPEEMLMILQKV 282 (412)
Q Consensus 270 ~s~~~ll~~L~~~ 282 (412)
.+.+++.+.|..+
T Consensus 69 ~~~~~l~~~l~~~ 81 (82)
T TIGR00411 69 PTKEELVEAIKKR 81 (82)
T ss_pred CCHHHHHHHHHhh
Confidence 8998888777653
No 108
>PTZ00102 disulphide isomerase; Provisional
Probab=90.80 E-value=0.78 Score=47.87 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|.+.+ .+.+|.+||++++++|..|..+. .+|. .+.+.... ++++...|++..+ ..+..+++..||.+.
T Consensus 365 ~~f~~~v---~~~~k~vlv~f~a~wC~~C~~~~-p~~~--~~a~~~~~~~~v~~~~id~~~~~--~~~~~~~v~~~Pt~~ 436 (477)
T PTZ00102 365 NTFEEIV---FKSDKDVLLEIYAPWCGHCKNLE-PVYN--ELGEKYKDNDSIIVAKMNGTANE--TPLEEFSWSAFPTIL 436 (477)
T ss_pred cchHHHH---hcCCCCEEEEEECCCCHHHHHHH-HHHH--HHHHHhccCCcEEEEEEECCCCc--cchhcCCCcccCeEE
Confidence 4455543 46689999999999999999886 3442 33333432 5667667765433 346678999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
++... + . +..+..|..+.+.+.+.|.....
T Consensus 437 ~~~~~-~-~--~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 437 FVKAG-E-R--TPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EEECC-C-c--ceeEecCcCCHHHHHHHHHHcCC
Confidence 88752 2 2 33457899999888888876554
No 109
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=90.42 E-value=5.3 Score=43.36 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 015165 301 RNNMRLREEQDAAYRAA-LEADQARERQRR 329 (412)
Q Consensus 301 ~~~R~lreeQD~aY~~S-L~~D~ek~~~r~ 329 (412)
+..+.++++-+.+-++. |+.|+.|+.++.
T Consensus 283 eek~~~keE~~kekee~Klekd~KKqqkek 312 (811)
T KOG4364|consen 283 EEKKAIKEENNKEKEETKLEKDIKKQQKEK 312 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544443 555655544433
No 110
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.39 E-value=0.12 Score=52.26 Aligned_cols=44 Identities=27% Similarity=0.256 Sum_probs=39.6
Q ss_pred CccHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 1 m~~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
|+...+.|.+|+.+||.+. ..|++||...+||++.|...++...
T Consensus 1 ~~~p~~~ls~f~~~t~~se-~~~~~~l~s~~~d~~~a~~~~~~~~ 44 (380)
T KOG2086|consen 1 AAIPLDSLSEFRAVTGPSE-SRARFYLESIYWDREAAHRSELEAF 44 (380)
T ss_pred CCCchhHHHHHhccCCCCc-cccccccccCCCchhhhhhhhcccc
Confidence 6677899999999999777 8999999999999999999987643
No 111
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=90.30 E-value=4.8 Score=40.38 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=14.3
Q ss_pred ChhHHHhhcCCChHHHHHHhc
Q 015165 200 DTPAFCEGTLCNEVLAAFVNE 220 (412)
Q Consensus 200 ~s~~F~r~vL~~~~v~~~l~~ 220 (412)
++..+...+|+ +.++++|+.
T Consensus 168 Es~e~~~~il~-~~~~~~l~~ 187 (321)
T PF07946_consen 168 ESNEVTDFILT-PELIKALNK 187 (321)
T ss_pred ccHhHHHHHhC-hHHHHHHHh
Confidence 45556655666 889999986
No 112
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=2.5 Score=42.21 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=39.1
Q ss_pred hCCCCCCceEEEEeCCCCccceeeeeeecCCCHHH----HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 015165 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEE----MLMILQKVIEESNPALLQARLDAEER 300 (412)
Q Consensus 240 ~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~----ll~~L~~~ie~~~~~L~~~r~er~er 300 (412)
-|+.+++|.+.+++-.+|-+-.-+. .-|.++-++ |+..|..++.-|.+...+.+.++.|.
T Consensus 72 p~n~d~~p~~G~lDv~GnDr~~~W~-~LG~~sre~AM~~FV~Lldr~C~~F~~yia~~k~~kde~ 135 (469)
T KOG3878|consen 72 PFNTDRAPALGVLDVIGNDRQQHWQ-LLGEISREQAMEGFVDLLDRMCSAFRPYIAAVKQDKDET 135 (469)
T ss_pred CCCcccCcccceeecccChHHHHHH-HHhcccHHHHHHHHHHHHHhcchhhhhHHHHhhhhhhhH
Confidence 3667889999988865443222221 226666554 55556777778889888887776654
No 113
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=89.76 E-value=0.5 Score=32.63 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
+++|.+.+++.--=+.+.....|+.++||+|.||...+.
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 578899999988777788999999999999999998764
No 114
>PTZ00121 MAEBL; Provisional
Probab=89.68 E-value=4.3 Score=47.70 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=6.1
Q ss_pred CcEEEEEEeC
Q 015165 186 FKLLFVYLHS 195 (412)
Q Consensus 186 ~K~LlVyLh~ 195 (412)
....++|+|-
T Consensus 855 kECvILGtHe 864 (2084)
T PTZ00121 855 NECVILGTHE 864 (2084)
T ss_pred CeEEEEeecc
Confidence 3456667775
No 115
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.62 E-value=2.2 Score=49.56 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=67.9
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEeccc---C---Chh-------------------HH
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSI---R---ASE-------------------GF 235 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv---~---~~E-------------------g~ 235 (412)
.+|+++|++..++|..|.... |.+.++-+ .+|++.+... + +.+ ..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~------P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~ 492 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVL------PDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDM 492 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHh------HHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCch
Confidence 489999999999999998755 44444433 2477766631 1 111 12
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhhH
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESNP 288 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~~ 288 (412)
.+...|++..+|..+||++. -.++.++.|....+++...|..++..|..
T Consensus 493 ~~~~~~~V~~iPt~ilid~~----G~iv~~~~G~~~~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 493 YLWRELGVSSWPTFAVVSPN----GKLIAQLSGEGHRKDLDDLVEAALQYYGE 541 (1057)
T ss_pred HHHHhcCCCccceEEEECCC----CeEEEEEecccCHHHHHHHHHHHHHhhcc
Confidence 45678899999999999874 25778889988888888888888877654
No 116
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=89.37 E-value=1.8 Score=44.59 Aligned_cols=97 Identities=14% Similarity=0.171 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
..+|++.+. +..+..||+++.++|..|..|.. +| ..+.+.++. ++.+...|++..+ +.. +++..+|.
T Consensus 353 ~~~f~~~v~---~~~~~vlv~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~i~~~~id~~~n~---~~~-~~i~~~Pt 422 (462)
T TIGR01130 353 GKNFDEIVL---DETKDVLVEFYAPWCGHCKNLAP-IY--EELAEKYKDAESDVVIAKMDATAND---VPP-FEVEGFPT 422 (462)
T ss_pred CcCHHHHhc---cCCCeEEEEEECCCCHhHHHHHH-HH--HHHHHHhhcCCCcEEEEEEECCCCc---cCC-CCccccCE
Confidence 456776653 45899999999999999998874 33 456666665 6888888887654 333 88999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+.+..... . .......|..+.+.++..|..
T Consensus 423 ~~~~~~~~--~-~~~~~~~g~~~~~~l~~~l~~ 452 (462)
T TIGR01130 423 IKFVPAGK--K-SEPVPYDGDRTLEDFSKFIAK 452 (462)
T ss_pred EEEEeCCC--C-cCceEecCcCCHHHHHHHHHh
Confidence 99986421 1 112245688888887776654
No 117
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.24 E-value=4.1 Score=40.30 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=60.9
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
.+++|||+.+|+|..|..+. |.+-++..+ .|++-..|++.. -.|+..|++.+.|.+.++.- |. -
T Consensus 43 ~~PVlV~fWap~~~~c~qL~------p~Lekla~~~~G~f~LakvN~D~~--p~vAaqfgiqsIPtV~af~d--Gq---p 109 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLT------PTLEKLAAEYKGKFKLAKVNCDAE--PMVAAQFGVQSIPTVYAFKD--GQ---P 109 (304)
T ss_pred CCCeEEEecCCCCchHHHHH------HHHHHHHHHhCCceEEEEecCCcc--hhHHHHhCcCcCCeEEEeeC--Cc---C
Confidence 46899999999999999888 455555554 688888887643 36788999999999887763 21 1
Q ss_pred eeeeecCCCHHHHHHHHHHHHHh
Q 015165 263 LQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
|.-..|..+-+.+-..|..++..
T Consensus 110 VdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 110 VDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ccccCCCCcHHHHHHHHHHhcCh
Confidence 33345666655555555555544
No 118
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=89.20 E-value=10 Score=42.05 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=7.7
Q ss_pred HHHHHHHhcCcEEE
Q 015165 177 DALQRSRSVFKLLF 190 (412)
Q Consensus 177 eAl~~Ak~e~K~Ll 190 (412)
.||..-.+++||.+
T Consensus 739 ~aLgL~q~DfkFGl 752 (1259)
T KOG0163|consen 739 QALGLDQNDFKFGL 752 (1259)
T ss_pred HHhCCCcccccccc
Confidence 34444456777765
No 119
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=88.90 E-value=1.4 Score=39.14 Aligned_cols=71 Identities=11% Similarity=0.216 Sum_probs=42.2
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcC------C--------------------C-hHHHHHHhcCeEEEe-cccCChhHHH
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTL------C--------------------N-EVLAAFVNENFVSWG-GSIRASEGFK 236 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL------~--------------------~-~~v~~~l~~nfV~w~-~dv~~~Eg~~ 236 (412)
.+|+++||+-.++|..|..+.-.+- . + +.+.+|+++.-+-|. ....+..+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4688888888888888887762221 0 0 124444444221120 0111122235
Q ss_pred HHhhCCCCCCceEEEEeCC
Q 015165 237 MSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 237 va~~l~~~~~P~l~lI~~~ 255 (412)
++..|++..+|++.||++.
T Consensus 104 l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred HHHHcCCCCCCEEEEECCC
Confidence 6778999999999999985
No 120
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=88.76 E-value=5 Score=36.80 Aligned_cols=64 Identities=6% Similarity=0.206 Sum_probs=41.4
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChh------------------HHHHHhhCC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASE------------------GFKMSNSLK 242 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~E------------------g~~va~~l~ 242 (412)
..+|+++||+.+++|..|.... +.+.++-++ ++++... .+.+ ...++..|+
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~l------p~l~~~~~~~~~~vv~Is~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~ 143 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLF------PIIKSIARAEETDVVMISD--GTPAEHRRFLKDHELGGERYVVSAEIGMAFQ 143 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHH------HHHHHHHHhcCCcEEEEeC--CCHHHHHHHHHhcCCCcceeechhHHHHhcc
Confidence 3679999999999999888765 233333332 3333321 1111 124567789
Q ss_pred CCCCceEEEEeCC
Q 015165 243 ASRYPFCAVVMPA 255 (412)
Q Consensus 243 ~~~~P~l~lI~~~ 255 (412)
+...|+..+|++.
T Consensus 144 v~~~P~~~lID~~ 156 (189)
T TIGR02661 144 VGKIPYGVLLDQD 156 (189)
T ss_pred CCccceEEEECCC
Confidence 9999999999974
No 121
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=88.19 E-value=3.6 Score=36.92 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=29.2
Q ss_pred HHHHHhcCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh
Q 015165 179 LQRSRSVFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS 232 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~ 232 (412)
+..+.-.+|+++||++ ..+|..|..-...+ +...-+|=+.++.+++.++++.
T Consensus 22 ~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l--~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 22 ISLSDYKGKWVVLFFYPLDFTFVCPTEIIAF--SDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred EehHHhCCCEEEEEEECCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEecCCH
Confidence 3333335799999998 56677777654322 1112223234676777666543
No 122
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=88.09 E-value=11 Score=42.02 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=12.8
Q ss_pred CCCccCCHHHHHHHHHhcCcEEE
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLF 190 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~Ll 190 (412)
|-|-.+.++-.+-.|-+++=+-+
T Consensus 458 ~F~~~~~lEk~~v~a~k~~~v~i 480 (988)
T KOG2072|consen 458 PFFSAFELEKLLVEAAKHNDVSI 480 (988)
T ss_pred hhcCHHHHHHHHHHHHhccceeE
Confidence 33344556677777766554433
No 123
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=87.56 E-value=1.8 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.++.+.+.+++.-.=+.+.++..|+.+++|+|.||...+.+
T Consensus 2 ~~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 2 NDEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35677888888665565789999999999999999998764
No 124
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=87.15 E-value=8.2 Score=32.95 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeC--CCCC---ChhHHHhhcCCChHHHHHHh--cCeEEEecccCC---hhHHHHHhhCC
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHS--PDHP---DTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRA---SEGFKMSNSLK 242 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~--~~~~---~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~---~Eg~~va~~l~ 242 (412)
.+|++++ ++.+++||=++. |+|. .|..+.. +|-. .++++=..|+++ .+...++..|+
T Consensus 9 ~nF~~~v----~~~~~vlV~F~A~~Pwc~k~~~~~~LA~---------e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 9 VTFYKVI----PKFKYSLVKFDTAYPYGEKHEAFTRLAE---------SSASATDDLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred hhHHHHH----hcCCcEEEEEeCCCCCCCChHHHHHHHH---------HHHhhcCceEEEEEecccccchhhHHHHHHhC
Confidence 3455544 567899999999 8777 3333331 2211 147788888865 55678999999
Q ss_pred CC--CCceEEEEeCCCCccceeeeeeecC-CCHHHHHHHHH
Q 015165 243 AS--RYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMILQ 280 (412)
Q Consensus 243 ~~--~~P~l~lI~~~~~~~~~vl~ri~G~-~s~~~ll~~L~ 280 (412)
+. .||.+.+......... ....|. -+++.|++.+.
T Consensus 76 I~~~gyPTl~lF~~g~~~~~---~~Y~G~~r~~~~lv~~v~ 113 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENP---VPYSGADVTVDALQRFLK 113 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCC---ccCCCCcccHHHHHHHHH
Confidence 99 9999988875211111 134686 88888887664
No 125
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=86.76 E-value=6 Score=36.48 Aligned_cols=94 Identities=6% Similarity=-0.023 Sum_probs=53.3
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH-----------------------HHHhh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-----------------------KMSNS 240 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~-----------------------~va~~ 240 (412)
.+||+++|++ .+.+.-|..=...+ ++...+|-+.++.+++.++++.+.. .+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l--~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDV--ADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH--HHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5789999999 77777766543221 1233344445788888888776541 34455
Q ss_pred CCC----CCC--ceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 241 LKA----SRY--PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 241 l~~----~~~--P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
|++ ... |...||++...-+...+.......+.++++..|.
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 665 233 7778887643211111111111236788877764
No 126
>PHA02125 thioredoxin-like protein
Probab=86.75 E-value=3.1 Score=32.02 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=47.1
Q ss_pred EEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 189 LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
++|++++++|..|..+.. +|. .+ .+.+. +|+..+...++..|++..+|.+. . + ..+.+..|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~-~l~--~~------~~~~~--~vd~~~~~~l~~~~~v~~~PT~~--~---g---~~~~~~~G 61 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKP-MLA--NV------EYTYV--DVDTDEGVELTAKHHIRSLPTLV--N---T---STLDRFTG 61 (75)
T ss_pred CEEEEECCCCHhHHHHHH-HHH--HH------hheEE--eeeCCCCHHHHHHcCCceeCeEE--C---C---EEEEEEeC
Confidence 478999999999998764 332 11 23333 44445566889999999999975 1 2 44556778
Q ss_pred C-CCHHHHHHHH
Q 015165 269 P-KSPEEMLMIL 279 (412)
Q Consensus 269 ~-~s~~~ll~~L 279 (412)
. .+..+|...|
T Consensus 62 ~~~~~~~l~~~~ 73 (75)
T PHA02125 62 VPRNVAELKEKL 73 (75)
T ss_pred CCCcHHHHHHHh
Confidence 5 3345655554
No 127
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=86.73 E-value=6.6 Score=33.33 Aligned_cols=37 Identities=8% Similarity=-0.021 Sum_probs=25.8
Q ss_pred HHHhhCCCCCC---------ceEEEEeCCCCccceeeeeeecCCCHHHHH
Q 015165 236 KMSNSLKASRY---------PFCAVVMPAANQRIALLQQVEGPKSPEEML 276 (412)
Q Consensus 236 ~va~~l~~~~~---------P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll 276 (412)
.+++.|++..+ |...||++. ..|+....|..+...+-
T Consensus 91 ~~~~~~gv~~~~~~~~~~~~p~~~lid~~----G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 91 KLAKAYGVWGEKKKKYMGIERSTFLIDPD----GKIVKVWRKVKPKGHAE 136 (140)
T ss_pred HHHHHhCCccccccccCCcceeEEEECCC----CEEEEEEecCCccchHH
Confidence 56677887777 888888863 36777778877554443
No 128
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=86.18 E-value=22 Score=32.07 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 300 RRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAE 341 (412)
Q Consensus 300 r~~~R~lreeQD~aY~~SL~~D~ek~~~r~ee~er~~~~~~e 341 (412)
.+..|+++++++++ .-|+..+++.+++=+++-+++++.++
T Consensus 76 ~E~err~~EE~~EE--~Rl~rere~~q~~~E~E~~~~~~KEe 115 (157)
T PF15236_consen 76 EEEERRRREEEEEE--ERLAREREELQRQFEEEQRKQREKEE 115 (157)
T ss_pred HHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666543 34666666555543333333333333
No 129
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=86.09 E-value=17 Score=38.05 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=8.8
Q ss_pred hcCCChHHHHHHhcC
Q 015165 207 GTLCNEVLAAFVNEN 221 (412)
Q Consensus 207 ~vL~~~~v~~~l~~n 221 (412)
..|+.++|.+|++.+
T Consensus 142 g~l~~~~v~sfl~a~ 156 (429)
T PRK00247 142 GFLTSEEVESFLQGR 156 (429)
T ss_pred ccCCHHHHHHHHhcc
Confidence 455566666666554
No 130
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=86.02 E-value=26 Score=31.60 Aligned_cols=6 Identities=17% Similarity=0.302 Sum_probs=2.5
Q ss_pred CCCHHH
Q 015165 269 PKSPEE 274 (412)
Q Consensus 269 ~~s~~~ 274 (412)
+++|..
T Consensus 40 llDpa~ 45 (157)
T PF15236_consen 40 LLDPAQ 45 (157)
T ss_pred cCCHHH
Confidence 344443
No 131
>KOG4691 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.44 E-value=31 Score=32.03 Aligned_cols=7 Identities=0% Similarity=-0.501 Sum_probs=4.1
Q ss_pred eecCCCC
Q 015165 396 IFFPLSS 402 (412)
Q Consensus 396 ~RlP~G~ 402 (412)
.|+|+|+
T Consensus 211 ~~~~egT 217 (227)
T KOG4691|consen 211 RRDSEGT 217 (227)
T ss_pred ccCCCCC
Confidence 4566665
No 132
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=85.00 E-value=9.2 Score=41.60 Aligned_cols=8 Identities=38% Similarity=0.389 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 015165 277 MILQKVIE 284 (412)
Q Consensus 277 ~~L~~~ie 284 (412)
..+...++
T Consensus 250 KQ~rk~me 257 (811)
T KOG4364|consen 250 KQLRKNME 257 (811)
T ss_pred HHHHHhHH
Confidence 33554443
No 133
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=84.80 E-value=29 Score=36.08 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 311 DAAYRAALEADQARERQRREEQERL 335 (412)
Q Consensus 311 D~aY~~SL~~D~ek~~~r~ee~er~ 335 (412)
...++.+|..|+.|..+.+..+.+.
T Consensus 212 ~~~l~~~l~~~q~~l~eL~~~~~~L 236 (420)
T COG4942 212 LAQLNSELSADQKKLEELRANESRL 236 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3667777777777666555444443
No 134
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=84.78 E-value=6 Score=32.34 Aligned_cols=61 Identities=10% Similarity=0.087 Sum_probs=33.3
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEec-ccCChhHHHHHhhCCCCCCce
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGG-SIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~-dv~~~Eg~~va~~l~~~~~P~ 248 (412)
++|+++|++.+++|..|...... | ..+.+....++.++.. |.+..+...++..++...||.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l--~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~ 81 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-I--RSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPY 81 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-H--HHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcE
Confidence 57899999999999988876633 2 1233333334433333 222223334455555444554
No 135
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=84.74 E-value=7.2 Score=35.71 Aligned_cols=47 Identities=11% Similarity=-0.067 Sum_probs=28.7
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E 233 (412)
.+|+++||++ ..+|..|..=+..+ ++..-+|-+.++.+++.++++.+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l--~~~~~~~~~~gv~vi~VS~D~~~ 77 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDL--ADKYAELKKLGVEVYSVSTDTHF 77 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHH--HHHHHHHHhcCCcEEEEeCCCHH
Confidence 5789999998 77787766533221 11122333347778888776643
No 136
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=83.89 E-value=19 Score=40.96 Aligned_cols=7 Identities=43% Similarity=0.700 Sum_probs=3.3
Q ss_pred CCHHHHH
Q 015165 270 KSPEEML 276 (412)
Q Consensus 270 ~s~~~ll 276 (412)
.+.+++.
T Consensus 773 ~t~eev~ 779 (1018)
T KOG2002|consen 773 RTLEEVL 779 (1018)
T ss_pred ccHHHHH
Confidence 4555543
No 137
>PRK15000 peroxidase; Provisional
Probab=82.94 E-value=10 Score=35.20 Aligned_cols=90 Identities=11% Similarity=0.022 Sum_probs=51.1
Q ss_pred cCcEEEEEEeCC-CCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH--------------------------HH
Q 015165 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF--------------------------KM 237 (412)
Q Consensus 185 e~K~LlVyLh~~-~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~--------------------------~v 237 (412)
.+||++|++|.. .+.-|..=+..+ +....+|-+.++.+++.++++.+.. .+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l--~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAF--DKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 578999999973 556665533221 1222333345788888888865432 23
Q ss_pred HhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHH
Q 015165 238 SNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQ 280 (412)
Q Consensus 238 a~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~ 280 (412)
++.|++. .+|..+||++.. .|.....|.. +.++++..|.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G----~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANG----IVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCC----EEEEEEecCCCCCCCHHHHHHHHH
Confidence 3445554 467777777642 3333333432 5677776664
No 138
>PRK13190 putative peroxiredoxin; Provisional
Probab=82.85 E-value=8.4 Score=35.82 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=47.3
Q ss_pred cCcEEEEEE-eCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH-------------------------HHHH
Q 015165 185 VFKLLFVYL-HSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG-------------------------FKMS 238 (412)
Q Consensus 185 e~K~LlVyL-h~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg-------------------------~~va 238 (412)
.+||++|+. -.+.|.-|..=...+ +...-+|=+.++.+++.++++.+. ..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l--~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAF--SRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 578877754 445565554322111 011112223467777777765432 1344
Q ss_pred hhCCCC------CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 239 NSLKAS------RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 239 ~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+.|++. .+|..+||++...-+...+.-..+..+.++++..|..
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 556653 4778888876421111122222333577887776653
No 139
>PTZ00056 glutathione peroxidase; Provisional
Probab=81.76 E-value=22 Score=32.96 Aligned_cols=39 Identities=8% Similarity=-0.043 Sum_probs=25.5
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEeccc
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSI 229 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv 229 (412)
.+|++||++...+|..|..-. +.+.++-+ .++.+++.++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~------p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHV------DQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHH------HHHHHHHHHHhcCceEEEEecc
Confidence 478999999998888876433 33333332 3577777764
No 140
>PRK13189 peroxiredoxin; Provisional
Probab=80.58 E-value=9.9 Score=35.99 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=25.2
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E 233 (412)
.+||++++.| .+.++.|..-...+ +...-+|=+.|+.+++.++++..
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l--~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAF--QKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHH
Confidence 4677776555 45566666433221 12222333346777777776544
No 141
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=79.53 E-value=14 Score=35.49 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=24.2
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.|...||++. ..|+.++.|..+++++...|...+
T Consensus 201 ~PttfLIDk~----GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 201 NFEKFLVDKN----GKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CceEEEECCC----CcEEEEECCCCCHHHHHHHHHHHh
Confidence 4666666653 467788889999888777676554
No 142
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=79.16 E-value=4.2 Score=27.77 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=41.6
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHH-HhhCCCCCCceEEEEeC
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKM-SNSLKASRYPFCAVVMP 254 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~v-a~~l~~~~~P~l~lI~~ 254 (412)
++++++++|..|..+.. ++... ++.+.++.+...|++....... ...++...+|.+.++..
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeC
Confidence 46677777777766552 22211 4566788888888887665443 25788899999888875
No 143
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.60 E-value=76 Score=31.25 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=3.6
Q ss_pred HHHHHhhhh
Q 015165 34 LELAISSFT 42 (412)
Q Consensus 34 le~Ai~~~~ 42 (412)
+-.|-..|+
T Consensus 19 f~kaq~lyl 27 (445)
T KOG2891|consen 19 FCKAQGLYL 27 (445)
T ss_pred hhhhcceee
Confidence 333444443
No 144
>PLN02412 probable glutathione peroxidase
Probab=77.11 E-value=43 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=18.8
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 260 IALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 260 ~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.+|+.+..|..+++++...|...++
T Consensus 141 G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 141 GKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHh
Confidence 4667788899998888777776654
No 145
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=76.35 E-value=24 Score=32.57 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=34.9
Q ss_pred hCCCCCCCc------cCCHHHHHHHHHhcCcEEEEEEeC-CCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh
Q 015165 163 YGNVKPNFV------SEGFMDALQRSRSVFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (412)
Q Consensus 163 yg~~~p~F~------~gs~~eAl~~Ak~e~K~LlVyLh~-~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E 233 (412)
.|+..|+|- .|+.. .+..+.=.+||++||++. +.+.-|..=... | +....+|=+.++-+++.++++.+
T Consensus 8 ~G~~aPdF~~~~~~~~~~~~-~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~-l-~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 8 INHPAPSFEEVALMPNGSFK-KISLSSYKGKWVVLFFYPLDFTFVCPTEIIQ-F-SDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred cCCcCCCCEeeccccCCCCc-EEeHHHHCCCEEEEEEEcCCCCCcCHHHHHH-H-HHHHHHHHHcCCEEEEEeCCCHH
Confidence 466667774 22211 122232347899999994 345555532211 1 12223333347777777776554
No 146
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=76.28 E-value=17 Score=32.46 Aligned_cols=42 Identities=10% Similarity=-0.134 Sum_probs=24.2
Q ss_pred cCcEEEEEEeCCC-CCChhHHHhhcCCChHHHHHHh--cCeEEEecccCCh
Q 015165 185 VFKLLFVYLHSPD-HPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRAS 232 (412)
Q Consensus 185 e~K~LlVyLh~~~-~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~ 232 (412)
.+|+++|+++..+ |..|..-.. .+.++.+ .++.+++.+++++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~------~l~~~~~~~~~~~vv~vs~D~~ 87 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVR------KFNQEAAELDNTVVLCISADLP 87 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHH------HHHHHHHHcCCcEEEEEeCCCH
Confidence 4778888888766 666665332 2233222 2566666666554
No 147
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=75.24 E-value=25 Score=30.59 Aligned_cols=23 Identities=4% Similarity=-0.019 Sum_probs=12.4
Q ss_pred ceEEEEeCCCCccceeeeeeecCCCHH
Q 015165 247 PFCAVVMPAANQRIALLQQVEGPKSPE 273 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~~s~~ 273 (412)
|...||++. ..|+....|....+
T Consensus 121 ~~~~lid~~----G~i~~~~~g~~~~~ 143 (154)
T PRK09437 121 RISFLIDAD----GKIEHVFDKFKTSN 143 (154)
T ss_pred eEEEEECCC----CEEEEEEcCCCcch
Confidence 555566653 24555666654443
No 148
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=74.65 E-value=47 Score=35.78 Aligned_cols=7 Identities=29% Similarity=0.505 Sum_probs=3.1
Q ss_pred HHHHHhC
Q 015165 158 VFERDYG 164 (412)
Q Consensus 158 ~f~~~yg 164 (412)
++..+||
T Consensus 424 nlFSKyG 430 (940)
T KOG4661|consen 424 NLFSKYG 430 (940)
T ss_pred HHHHHhc
Confidence 3344454
No 149
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=74.63 E-value=23 Score=33.03 Aligned_cols=81 Identities=10% Similarity=0.070 Sum_probs=52.3
Q ss_pred cCcEEEEE-EeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 185 VFKLLFVY-LHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 185 e~K~LlVy-Lh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
-.+++.|. +++++|..|..+. +.+.++-. .++.+...|+.. .-.++..|++..+|.+.+... +. .
T Consensus 131 ~~~pv~I~~F~a~~C~~C~~~~------~~l~~l~~~~~~i~~~~vD~~~--~~~~~~~~~V~~vPtl~i~~~--~~--~ 198 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPYCPYAV------LMAHKFALANDKILGEMIEANE--NPDLAEKYGVMSVPKIVINKG--VE--E 198 (215)
T ss_pred cCCCcEEEEEECCCCCCcHHHH------HHHHHHHHhcCceEEEEEeCCC--CHHHHHHhCCccCCEEEEecC--CE--E
Confidence 34444444 7899999999765 22333332 345555666654 345778899999999887532 21 1
Q ss_pred eeeeeecCCCHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~ 281 (412)
+.|..+.++|.+.|..
T Consensus 199 ----~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 199 ----FVGAYPEEQFLEYILS 214 (215)
T ss_pred ----EECCCCHHHHHHHHHh
Confidence 5688888888777653
No 150
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=72.81 E-value=1.2e+02 Score=31.22 Aligned_cols=8 Identities=25% Similarity=0.285 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 015165 274 EMLMILQK 281 (412)
Q Consensus 274 ~ll~~L~~ 281 (412)
++...|..
T Consensus 285 elar~Lr~ 292 (442)
T PF06637_consen 285 ELARSLRA 292 (442)
T ss_pred HHHHHHhh
Confidence 33333333
No 151
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=72.31 E-value=31 Score=33.67 Aligned_cols=94 Identities=15% Similarity=0.031 Sum_probs=51.3
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--------------------------~~v 237 (412)
.+|++++|+| .+.+..|..=+..+ ++...+|-+.++.+++.++++++. ..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l--~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGF--SERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4688888888 57777766533221 122233333577788888776531 134
Q ss_pred HhhCCCC-----CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 238 SNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 238 a~~l~~~-----~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
++.|++. ..|..+||++...-+...+.-.....+.++++..|.
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~ 222 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFD 222 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 4566653 468888887642111111111222236777777664
No 152
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=71.01 E-value=17 Score=29.88 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=40.7
Q ss_pred cCcEEEEEEeCC-CCCChhHHHhhcCCChHHHHHH---h-cCeEEEecccCChhHH-------------------HHHhh
Q 015165 185 VFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFV---N-ENFVSWGGSIRASEGF-------------------KMSNS 240 (412)
Q Consensus 185 e~K~LlVyLh~~-~~~~s~~F~r~vL~~~~v~~~l---~-~nfV~w~~dv~~~Eg~-------------------~va~~ 240 (412)
.+|+++|++... +|..|..-.. .+.++. . .++-+++.+.++.+.. .+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~------~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 97 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELP------ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKA 97 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHH------HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHH
T ss_pred CCCcEEEEEeCccCccccccchh------HHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHH
Confidence 568999999887 7777665553 333333 3 3677777777666521 34445
Q ss_pred CCCC------CCceEEEEeCC
Q 015165 241 LKAS------RYPFCAVVMPA 255 (412)
Q Consensus 241 l~~~------~~P~l~lI~~~ 255 (412)
|++. .+|...||++.
T Consensus 98 ~~~~~~~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 98 FGIEDEKDTLALPAVFLIDPD 118 (124)
T ss_dssp TTCEETTTSEESEEEEEEETT
T ss_pred cCCccccCCceEeEEEEECCC
Confidence 5555 67777777663
No 153
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=69.64 E-value=66 Score=34.74 Aligned_cols=9 Identities=22% Similarity=0.331 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 015165 151 EAMEFVAVF 159 (412)
Q Consensus 151 ~~~~F~~~f 159 (412)
+|.+-|..+
T Consensus 459 eAtkCI~hL 467 (940)
T KOG4661|consen 459 EATKCIEHL 467 (940)
T ss_pred HHHHHHHHh
Confidence 333344433
No 154
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=69.57 E-value=23 Score=30.34 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=24.7
Q ss_pred HHHHhhCCCC---------CCceEEEEeCCCCccceeeeeeecCCC
Q 015165 235 FKMSNSLKAS---------RYPFCAVVMPAANQRIALLQQVEGPKS 271 (412)
Q Consensus 235 ~~va~~l~~~---------~~P~l~lI~~~~~~~~~vl~ri~G~~s 271 (412)
..++..|++. .+|..+||+... .|+....|..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G----~V~~~~~g~~~ 136 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDG----KVVYRHVGPDP 136 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTS----BEEEEEESSBT
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCC----EEEEEEeCCCC
Confidence 3566778888 999999999842 56666677655
No 155
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=68.73 E-value=7.5 Score=33.18 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhh
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~ 40 (412)
.++.|.--++=||++. +.|+..|+.+||||-.||-.
T Consensus 76 ~~edI~lv~~q~gvs~-~~A~~AL~~~~gDl~~AI~~ 111 (115)
T PRK06369 76 PEEDIELVAEQTGVSE-EEARKALEEANGDLAEAILK 111 (115)
T ss_pred CHHHHHHHHHHHCcCH-HHHHHHHHHcCCcHHHHHHH
Confidence 3566777889999888 89999999999999999864
No 156
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.66 E-value=35 Score=33.16 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=53.7
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeC
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
++...|.++|-+...||..|.... |-|.++-|+ .+||...||+ |+...|..+++...|..++.-.
T Consensus 17 s~ag~k~v~Vdfta~wCGPCk~Ia------P~Fs~lankYp~aVFlkVdVd--~c~~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGPCKRIA------PIFSDLANKYPGAVFLKVDVD--ECRGTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred hccCceEEEEEEEecccchHHhhh------hHHHHhhhhCcccEEEEEeHH--HhhchhhhcCcccCceEEEEec
Confidence 455689999999999999999765 777777776 6899999996 6667788999999998776654
No 157
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=68.54 E-value=28 Score=30.75 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=48.9
Q ss_pred HHhcCcE-EEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCC--CCceEEEEeCCCCc
Q 015165 182 SRSVFKL-LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS--RYPFCAVVMPAANQ 258 (412)
Q Consensus 182 Ak~e~K~-LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~--~~P~l~lI~~~~~~ 258 (412)
-....+. +++++...+....+.+...+ ..+..=...+++|--.|.. ..-++...|+++ .+|.++++....+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~a~~~~~~~~f~~~d~~--~~~~~~~~~~i~~~~~P~~vi~~~~~~- 163 (184)
T PF13848_consen 90 LFSSPKPPVLILFDNKDNESTEAFKKEL---QDIAKKFKGKINFVYVDAD--DFPRLLKYFGIDEDDLPALVIFDSNKG- 163 (184)
T ss_dssp HHSTSSEEEEEEEETTTHHHHHHHHHHH---HHHHHCTTTTSEEEEEETT--TTHHHHHHTTTTTSSSSEEEEEETTTS-
T ss_pred HhcCCCceEEEEEEcCCchhHHHHHHHH---HHHHHhcCCeEEEEEeehH--HhHHHHHHcCCCCccCCEEEEEECCCC-
Confidence 3344545 55555444344455555322 2333333345555555555 223466678776 9999999997654
Q ss_pred cceeeeeeecCCCHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L 279 (412)
+.... . .|..+++.+..-|
T Consensus 164 ~~~~~-~-~~~~~~~~i~~Fl 182 (184)
T PF13848_consen 164 KYYYL-P-EGEITPESIEKFL 182 (184)
T ss_dssp EEEE----SSCGCHHHHHHHH
T ss_pred cEEcC-C-CCCCCHHHHHHHh
Confidence 22222 2 6778877665544
No 158
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=68.30 E-value=7.9 Score=33.05 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~ 40 (412)
++.|.--++=||++. +.|+..|+.+||||-.||-.
T Consensus 79 ~eDI~lV~eq~gvs~-e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 79 EDDIELVMKQCNVSK-EEARRALEECGGDLAEAIMK 113 (116)
T ss_pred HHHHHHHHHHhCcCH-HHHHHHHHHcCCCHHHHHHH
Confidence 456666788899888 89999999999999999853
No 159
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.46 E-value=31 Score=35.24 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=66.7
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
....+..+|-+..++|..|..+..... .+...++. ++-.+.|+-.+...+++.|++..||.+.+..+. . .+
T Consensus 44 ~~~~~~~~v~fyapwc~~c~~l~~~~~---~~~~~l~~--~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~---~~ 114 (383)
T KOG0191|consen 44 LKDDSPWLVEFYAPWCGHCKKLAPTYK---KLAKALKG--KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-K---KP 114 (383)
T ss_pred hccCCceEEEEECCCCcchhhhchHHH---HHHHHhcC--ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-C---ce
Confidence 345667788888899999999984443 44444555 777788888888899999999999999999874 1 12
Q ss_pred eeeeecCCCHHHHHHHHHHHHHh
Q 015165 263 LQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+ ...|..+.+.+...+..-++.
T Consensus 115 ~-~~~~~~~~~~~~~~~~~~~~~ 136 (383)
T KOG0191|consen 115 I-DYSGPRNAESLAEFLIKELEP 136 (383)
T ss_pred e-eccCcccHHHHHHHHHHhhcc
Confidence 2 234667777776666555443
No 160
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=65.39 E-value=35 Score=25.00 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=36.2
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
++++++++|..|.... .+| +++.+ ...++-+...|+.+.. .++..+++.+.|.+.+
T Consensus 3 v~~f~~~~C~~C~~~~-~~l--~~l~~-~~~~i~~~~id~~~~~--~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAV-QAA--NRIAA-LNPNISAEMIDAAEFP--DLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHH-HHH--HHHHH-hCCceEEEEEEcccCH--hHHHHcCCcccCEEEE
Confidence 4566788999998665 222 12222 1235666677776543 4677899999999754
No 161
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=65.35 E-value=47 Score=30.75 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=22.1
Q ss_pred cEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh
Q 015165 187 KLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (412)
Q Consensus 187 K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E 233 (412)
||++++.| .+.|+.|..-...+ +...-+|=+.++.+++.++++.+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l--~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAF--AKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHH--HHHHHHHHHcCCEEEEEECCCHH
Confidence 77766555 34455554433111 01111222346777777777643
No 162
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=63.96 E-value=11 Score=37.38 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=35.0
Q ss_pred CccHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 1 m~~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
|+-..+.|.++.+.||..= -.|+..|+.++||++.|+.--=.
T Consensus 1 m~isa~~IK~LRe~Tgagm-~dCKkAL~e~~gDiekAi~~LRk 42 (290)
T TIGR00116 1 MAITAQLVKELRERTGAGM-MDCKKALTEANGDFEKAIKNLRE 42 (290)
T ss_pred CCCCHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 4445678999999999655 79999999999999999986533
No 163
>PRK13191 putative peroxiredoxin; Provisional
Probab=63.90 E-value=44 Score=31.42 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=26.4
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG 234 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg 234 (412)
.+||++||.| .+.+.-|..=...+ ++..-+|-+.|+.+++.++++...
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l--~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSF--AKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHH--HHHHHHHHHCCCEEEEEECCCHHH
Confidence 4678777555 34455555433221 122223444578888888876653
No 164
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=63.73 E-value=38 Score=33.98 Aligned_cols=45 Identities=18% Similarity=0.331 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 273 EEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEAD 321 (412)
Q Consensus 273 ~~ll~~L~~~ie~~~~~L~~~r~er~er~~~R~lreeQD~aY~~SL~~D 321 (412)
..|++.+-..+|... ..+--.+.+.-....|++..+++.....+.
T Consensus 234 ~~l~~~v~~l~D~~~----~~~l~~e~~~K~~k~R~~~~~~~~K~~~~~ 278 (321)
T PF07946_consen 234 EPLLKLVFYLIDKLA----RFKLSPEAKKKAKKNREEEEEKILKEAHQE 278 (321)
T ss_pred HHHHHHHHHHHHHhh----eeeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555444554433 222223333444566666666555544433
No 165
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=60.76 E-value=1.8e+02 Score=30.57 Aligned_cols=6 Identities=33% Similarity=0.728 Sum_probs=2.6
Q ss_pred HHhhhH
Q 015165 283 IEESNP 288 (412)
Q Consensus 283 ie~~~~ 288 (412)
++++.|
T Consensus 273 l~~~~P 278 (429)
T PRK00247 273 LERKYP 278 (429)
T ss_pred HHHhcC
Confidence 454433
No 166
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=60.31 E-value=75 Score=24.33 Aligned_cols=50 Identities=10% Similarity=-0.012 Sum_probs=34.1
Q ss_pred EEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 191 VYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 191 VyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
|.+++++|..|+..- +.+.++.++ .+.+ .++++.+ .+..|++...|.+++
T Consensus 3 i~~~a~~C~~C~~~~------~~~~~~~~e~~~~~~~--~~v~~~~---~a~~~~v~~vPti~i 55 (76)
T TIGR00412 3 IQIYGTGCANCQMTE------KNVKKAVEELGIDAEF--EKVTDMN---EILEAGVTATPGVAV 55 (76)
T ss_pred EEEECCCCcCHHHHH------HHHHHHHHHcCCCeEE--EEeCCHH---HHHHcCCCcCCEEEE
Confidence 667889999999776 445555554 3444 3443333 256799999998887
No 167
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=59.96 E-value=7.6 Score=41.67 Aligned_cols=89 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc-----C-eEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-----N-FVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-----n-fV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
||=+.+++|..|..|. |.+.+|=+. . ..+...|.-+.++-.+++.++++.||.+-...+.+- +...=
T Consensus 61 lVEFy~swCGhCr~FA------Ptfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~-~~~~G 133 (606)
T KOG1731|consen 61 LVEFYNSWCGHCRAFA------PTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQ-NKTDG 133 (606)
T ss_pred HHHHHHhhhhhhhhcc------hHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccc-cCcCC
Confidence 5556678999999998 566655432 3 357889999999999999999999999988876431 22222
Q ss_pred eeeecCCCHHHHHHHHHHHHHh
Q 015165 264 QQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
..++|...+.++...|...+..
T Consensus 134 ~~~~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 134 SDVSGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred CcccCCcchhhHHHHHHHHHHH
Confidence 3355777777777777665543
No 168
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=58.15 E-value=2e+02 Score=28.57 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 015165 304 MRLREEQDAAYRA 316 (412)
Q Consensus 304 R~lreeQD~aY~~ 316 (412)
..||.+|+ +|++
T Consensus 156 ~~lr~~q~-~fe~ 167 (291)
T PF06098_consen 156 AALRRQQR-AFEE 167 (291)
T ss_pred HHHHHHHH-HHHH
Confidence 45565554 3443
No 169
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=57.59 E-value=2.2e+02 Score=30.44 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEE
Q 015165 151 EAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLF 190 (412)
Q Consensus 151 ~~~~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~Ll 190 (412)
.-..||-.|..-|-.. +.||...|..++-.--...|..|
T Consensus 105 ~lA~fit~YNAv~R~~-~~~~~~~Y~~~v~~~l~~~k~Gl 143 (489)
T PF05262_consen 105 TLATFITIYNAVYRGD-LDYFKKKYKNVVIKNLTPEKAGL 143 (489)
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHhhHHHHhhcChhhccc
Confidence 3467888888888333 68888888887765544444433
No 170
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=56.88 E-value=1.4e+02 Score=27.86 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 015165 275 MLMILQKVIEESNPALLQARLDA--EERRNNMRLREEQD----------AAYRAALEADQARE 325 (412)
Q Consensus 275 ll~~L~~~ie~~~~~L~~~r~er--~er~~~R~lreeQD----------~aY~~SL~~D~ek~ 325 (412)
-|.++-..+..|+..++..-++. .+...+|.+++-|+ ..|++-|+ |.||+
T Consensus 140 ~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~fGy~vDprd~RF~emLq-qkEke 201 (225)
T KOG4848|consen 140 NMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEYFGYWVDPRDPRFEEMLQ-QKEKE 201 (225)
T ss_pred HHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHhCccCCCCCHHHHHHHH-HHHHH
Confidence 34445555555555554322222 22334556666663 55666554 33443
No 171
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=56.81 E-value=7.4 Score=41.52 Aligned_cols=86 Identities=17% Similarity=0.189 Sum_probs=66.7
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC-hhHHH-----HHhhCC
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEGFK-----MSNSLK 242 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~-~Eg~~-----va~~l~ 242 (412)
.||.- =++|.+.|+.+.|++++-+-...|.=|..+.+.-|.|++..+.+++|||-..+|-.+ |+--+ |-...+
T Consensus 96 dwypw-gqeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg 174 (786)
T KOG2244|consen 96 DWYPW-GQEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSG 174 (786)
T ss_pred ccCcc-hHHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccC
Confidence 77753 379999999999999988777778889999999999999999999999988777543 22111 223456
Q ss_pred CCCCceEEEEeCC
Q 015165 243 ASRYPFCAVVMPA 255 (412)
Q Consensus 243 ~~~~P~l~lI~~~ 255 (412)
-...|..+.+.|.
T Consensus 175 ~GGWPmsV~LTPd 187 (786)
T KOG2244|consen 175 GGGWPMSVFLTPD 187 (786)
T ss_pred CCCCceeEEeCCC
Confidence 6778888887763
No 172
>CHL00098 tsf elongation factor Ts
Probab=56.20 E-value=19 Score=33.81 Aligned_cols=38 Identities=26% Similarity=0.298 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
.++|.++.+.||..= -.|...|+.++||++.|+.-.=.
T Consensus 2 a~~ik~LR~~Tgag~-~dck~AL~e~~gd~~~A~~~Lr~ 39 (200)
T CHL00098 2 AELVKELRDKTGAGM-MDCKKALQEANGDFEKALESLRQ 39 (200)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 367889999999554 79999999999999999976533
No 173
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.86 E-value=96 Score=33.10 Aligned_cols=9 Identities=11% Similarity=0.135 Sum_probs=5.4
Q ss_pred hHHHHHHhc
Q 015165 212 EVLAAFVNE 220 (412)
Q Consensus 212 ~~v~~~l~~ 220 (412)
+.|+..|+.
T Consensus 130 ~~v~~~l~~ 138 (489)
T PF05262_consen 130 NVVIKNLTP 138 (489)
T ss_pred HHHHhhcCh
Confidence 456666664
No 174
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=55.65 E-value=1.3e+02 Score=25.82 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHHHHHhcC-eEEEecccCChhHHHHHhhCCCC--CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 213 VLAAFVNEN-FVSWGGSIRASEGFKMSNSLKAS--RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 213 ~v~~~l~~n-fV~w~~dv~~~Eg~~va~~l~~~--~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.|.+-.+.. +.|--.|...... +...|++. .||.++++....+ +..+ ..|..+.+.+..-+..+++
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~~--~~~~fgl~~~~~P~v~i~~~~~~-KY~~---~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQLD--LEEALNIGGFGYPAMVAINFRKM-KFAT---LKGSFSEDGINEFLRELSY 116 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccHH--HHHHcCCCccCCCEEEEEecccC-cccc---ccCccCHHHHHHHHHHHHc
Confidence 455545556 5555566665444 77788874 5999999988533 4432 4578888777666665554
No 175
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=55.58 E-value=1e+02 Score=26.72 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=12.4
Q ss_pred cCcEEEEEEeCCCCCChhH
Q 015165 185 VFKLLFVYLHSPDHPDTPA 203 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~ 203 (412)
.+|+++|++...+|. |..
T Consensus 21 ~Gk~vvl~fwatwC~-C~~ 38 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTP 38 (152)
T ss_pred CCCEEEEEEEcCCCC-chH
Confidence 367777777777776 543
No 176
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=53.68 E-value=11 Score=37.01 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 7 KLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 7 ~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
.+..|+++|...|...|..+|+.++|+++.|+..||...
T Consensus 27 ~ll~efa~~~s~dea~aq~~l~~~dw~~~ral~~~~~se 65 (349)
T KOG2756|consen 27 LLCVEFASVASCDAAVAQCFLAENDWEMERALNSYFEPE 65 (349)
T ss_pred HHHHHHHHhhhhHHHhHHHHhhcchhHHHHHHHhhcCce
Confidence 456778888777767899999999999999999999844
No 177
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=2.2e+02 Score=29.65 Aligned_cols=22 Identities=14% Similarity=0.300 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015165 313 AYRAALEADQARERQRREEQER 334 (412)
Q Consensus 313 aY~~SL~~D~ek~~~r~ee~er 334 (412)
.|..-=++-+|-+.+|++|.++
T Consensus 379 ~~K~th~~rqEaaQ~kk~Ek~K 400 (440)
T KOG2357|consen 379 FLKLTHAARQEAAQEKKAEKKK 400 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444333
No 178
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=53.61 E-value=1.3e+02 Score=31.76 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=9.6
Q ss_pred cCCCHHHHHHHHHHHH
Q 015165 268 GPKSPEEMLMILQKVI 283 (412)
Q Consensus 268 G~~s~~~ll~~L~~~i 283 (412)
+..+.+.+++.++..+
T Consensus 497 a~SS~eTll~niq~ll 512 (641)
T KOG3915|consen 497 ALSSIETLLTNIQGLL 512 (641)
T ss_pred cchhHHHHHHHHHHHH
Confidence 3456677777765444
No 179
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=53.60 E-value=45 Score=28.41 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=26.5
Q ss_pred cCcEEEEEEeCCC-CCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChh
Q 015165 185 VFKLLFVYLHSPD-HPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASE 233 (412)
Q Consensus 185 e~K~LlVyLh~~~-~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~E 233 (412)
.+|+++||++..+ |..|..-. +.+.++.++ ++.+++.++++.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~------~~l~~~~~~~~~~~vi~Is~d~~~ 70 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQT------KRFNKEAAKLDNTVVLTISADLPF 70 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHH------HHHHHHHHhcCCCEEEEEECCCHH
Confidence 4788999988766 46665443 233333332 6777787776553
No 180
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=38 Score=30.55 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCCCCCC----ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCC--hHHHHHHhcCeEEEecccCChhHH
Q 015165 164 GNVKPNF----VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCN--EVLAAFVNENFVSWGGSIRASEGF 235 (412)
Q Consensus 164 g~~~p~F----~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~--~~v~~~l~~nfV~w~~dv~~~Eg~ 235 (412)
|..-|.| -.|.. +..+.-.+|++++|++- .. +|.- |..=.|+ +..-+|=+-|.+++|.+.++++..
T Consensus 7 G~~aPdF~Lp~~~g~~---v~Lsd~~Gk~VVLyFYP-k~-~Tpg-CT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 7 GDKAPDFELPDQDGET---VSLSDLRGKPVVLYFYP-KD-FTPG-CTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CCcCCCeEeecCCCCE---EehHHhcCCcEEEEECC-CC-CCCc-chHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 4555666 23322 55566678899999994 32 1111 1111111 122223334899999999988765
No 181
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=53.50 E-value=32 Score=29.38 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=8.8
Q ss_pred cEEEEEEe-CCCCCChh
Q 015165 187 KLLFVYLH-SPDHPDTP 202 (412)
Q Consensus 187 K~LlVyLh-~~~~~~s~ 202 (412)
|+++|++. ..+|..|.
T Consensus 29 k~~vl~f~~~~~c~~C~ 45 (149)
T cd03018 29 KPVVLVFFPLAFTPVCT 45 (149)
T ss_pred CeEEEEEeCCCCCccHH
Confidence 66655555 45555554
No 182
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=51.55 E-value=1.6e+02 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=22.3
Q ss_pred CCce----EEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 245 RYPF----CAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 245 ~~P~----l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.+|. ..||++. ..|+.+..|..+++++...|..
T Consensus 115 ~~p~~~~~tflID~~----G~v~~~~~g~~~~~~l~~~i~~ 151 (153)
T TIGR02540 115 KEPRWNFWKYLVNPE----GQVVKFWRPEEPVEEIRPEITA 151 (153)
T ss_pred CCCCCccEEEEEcCC----CcEEEEECCCCCHHHHHHHHHH
Confidence 4565 6666653 3566777888888887776654
No 183
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=51.46 E-value=23 Score=33.14 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=34.7
Q ss_pred CccHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 1 m~~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
|+-..+.|.++.+.||..= -.|...|..++||++.|+.-.=.
T Consensus 1 ~~i~a~~ik~LR~~tga~~-~~ck~AL~~~~gd~~~A~~~lr~ 42 (198)
T PRK12332 1 MAITAKLVKELREKTGAGM-MDCKKALEEANGDMEKAIEWLRE 42 (198)
T ss_pred CCCCHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 3445678999999999655 79999999999999999986543
No 184
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=51.16 E-value=2.4e+02 Score=28.49 Aligned_cols=6 Identities=17% Similarity=-0.053 Sum_probs=2.7
Q ss_pred CceeEe
Q 015165 387 NVTQVI 392 (412)
Q Consensus 387 ~~~~v~ 392 (412)
...+|+
T Consensus 178 knftva 183 (361)
T KOG3634|consen 178 KNFTVA 183 (361)
T ss_pred Ccceee
Confidence 334554
No 185
>PRK09377 tsf elongation factor Ts; Provisional
Probab=50.78 E-value=22 Score=35.27 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
..++|.++.+.||..= -.|+..|+.++||++.|+.--=.
T Consensus 5 s~~~IK~LR~~Tgagm-~dCKkAL~e~~gD~ekAi~~Lrk 43 (290)
T PRK09377 5 TAALVKELRERTGAGM-MDCKKALTEADGDIEKAIEWLRK 43 (290)
T ss_pred CHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 5678999999999554 79999999999999999987643
No 186
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=50.25 E-value=43 Score=25.14 Aligned_cols=40 Identities=15% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
...|+...+|||+..++.....|..+|-|-..|+++.+..
T Consensus 6 rk~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 6 RKTVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3568899999999454889999999999999999998774
No 187
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=49.33 E-value=22 Score=30.52 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHH-HHHh---cCeEEEecccCChhHH-------HHHhhCCC
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLA-AFVN---ENFVSWGGSIRASEGF-------KMSNSLKA 243 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~-~~l~---~nfV~w~~dv~~~Eg~-------~va~~l~~ 243 (412)
|.++++...+..+.++||+.++.+.+-+.+|-+.-..+.++ +.+. .+.++.-+.|.+...| +..-.+++
T Consensus 8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l 87 (119)
T PF06110_consen 8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL 87 (119)
T ss_dssp HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence 34445544567799999999876555555665544443333 3444 3666666666655544 33335899
Q ss_pred CCCceEEEEeC
Q 015165 244 SRYPFCAVVMP 254 (412)
Q Consensus 244 ~~~P~l~lI~~ 254 (412)
+..|.++-...
T Consensus 88 ~~IPTLi~~~~ 98 (119)
T PF06110_consen 88 KGIPTLIRWET 98 (119)
T ss_dssp -SSSEEEECTS
T ss_pred eecceEEEECC
Confidence 99999876654
No 188
>PRK13599 putative peroxiredoxin; Provisional
Probab=49.23 E-value=1.3e+02 Score=28.18 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=7.9
Q ss_pred CCceEEEEeCC
Q 015165 245 RYPFCAVVMPA 255 (412)
Q Consensus 245 ~~P~l~lI~~~ 255 (412)
..|.+.||++.
T Consensus 118 ~~R~tfIID~d 128 (215)
T PRK13599 118 TVRAVFIVDDK 128 (215)
T ss_pred eeeEEEEECCC
Confidence 56777888764
No 189
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=48.28 E-value=1.2e+02 Score=28.92 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=43.3
Q ss_pred CCChhHHHhhcCCChH----HHHHHhcCeEEE-ecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCH
Q 015165 198 HPDTPAFCEGTLCNEV----LAAFVNENFVSW-GGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSP 272 (412)
Q Consensus 198 ~~~s~~F~r~vL~~~~----v~~~l~~nfV~w-~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~ 272 (412)
|..+..-...+||+.+ +.+.+...-+-- .|+..=.+..+++..+++..+|.+.+-++ .+ +.|..++
T Consensus 150 ~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~~~G------~~---~~G~~~~ 220 (232)
T PRK10877 150 DSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIADHYALGVQFGVQGTPAIVLSNG------TL---VPGYQGP 220 (232)
T ss_pred CchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHHHhHHHHHHcCCccccEEEEcCC------eE---eeCCCCH
Confidence 4455666667888752 223333221111 22222244567788999999998774333 12 3588899
Q ss_pred HHHHHHHH
Q 015165 273 EEMLMILQ 280 (412)
Q Consensus 273 ~~ll~~L~ 280 (412)
+.|...|.
T Consensus 221 ~~L~~~l~ 228 (232)
T PRK10877 221 KEMKAFLD 228 (232)
T ss_pred HHHHHHHH
Confidence 88877665
No 190
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=48.16 E-value=3.4e+02 Score=28.17 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=5.8
Q ss_pred CCCHHHHHHHHH
Q 015165 269 PKSPEEMLMILQ 280 (412)
Q Consensus 269 ~~s~~~ll~~L~ 280 (412)
.++|..+.....
T Consensus 54 mvD~~~v~~q~~ 65 (387)
T PRK09510 54 MVDPGAVVEQYN 65 (387)
T ss_pred ecChHHHHHHHH
Confidence 345555544443
No 191
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=47.38 E-value=1.4e+02 Score=23.70 Aligned_cols=74 Identities=18% Similarity=0.051 Sum_probs=45.7
Q ss_pred EEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 189 LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
=+..+++++|..|.... .++ +++.+. +.++-+-..|+++. -.++..|++.+.|.+++ .+ +++. .|
T Consensus 15 ~i~~F~~~~C~~C~~~~-~~~--~~l~~~-~~~i~~~~vd~~~~--~e~a~~~~V~~vPt~vi-dG------~~~~--~G 79 (89)
T cd03026 15 NFETYVSLSCHNCPDVV-QAL--NLMAVL-NPNIEHEMIDGALF--QDEVEERGIMSVPAIFL-NG------ELFG--FG 79 (89)
T ss_pred EEEEEECCCCCCcHHHH-HHH--HHHHHH-CCCceEEEEEhHhC--HHHHHHcCCccCCEEEE-CC------EEEE--eC
Confidence 35556668899988544 333 344432 23566666676533 45788999999999964 32 2232 37
Q ss_pred CCCHHHHHH
Q 015165 269 PKSPEEMLM 277 (412)
Q Consensus 269 ~~s~~~ll~ 277 (412)
..+.++++.
T Consensus 80 ~~~~~e~~~ 88 (89)
T cd03026 80 RMTLEEILA 88 (89)
T ss_pred CCCHHHHhh
Confidence 677777653
No 192
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=47.28 E-value=2.4e+02 Score=26.32 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015165 311 DAAYRAALEADQARERQ 327 (412)
Q Consensus 311 D~aY~~SL~~D~ek~~~ 327 (412)
-..|++.|..-+.+..+
T Consensus 107 ~~~ye~~L~~Ar~eA~~ 123 (204)
T PRK09174 107 VAAYEQELAQARAKAHS 123 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777666554443
No 193
>PLN02316 synthase/transferase
Probab=47.19 E-value=1.4e+02 Score=34.96 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=9.8
Q ss_pred eeeeecCCCHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L 279 (412)
..-+.|.++.++|-..|
T Consensus 234 ~~~V~~~~~~~~~~~~l 250 (1036)
T PLN02316 234 CVEIEGGMDEHSFEDFL 250 (1036)
T ss_pred EEEeCCCCCHHHHHHHH
Confidence 33456667766665554
No 194
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=45.97 E-value=2.8e+02 Score=26.67 Aligned_cols=10 Identities=20% Similarity=0.531 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 015165 304 MRLREEQDAA 313 (412)
Q Consensus 304 R~lreeQD~a 313 (412)
..++..|.++
T Consensus 40 ek~k~aeeea 49 (246)
T PF00769_consen 40 EKLKQAEEEA 49 (246)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 195
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=45.70 E-value=5e+02 Score=29.45 Aligned_cols=13 Identities=8% Similarity=0.015 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHh
Q 015165 273 EEMLMILQKVIEE 285 (412)
Q Consensus 273 ~~ll~~L~~~ie~ 285 (412)
++++..-...+..
T Consensus 496 ~~ii~~A~~~~~~ 508 (771)
T TIGR01069 496 HFIIEQAKTFYGE 508 (771)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444433
No 196
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=44.97 E-value=73 Score=33.91 Aligned_cols=7 Identities=71% Similarity=0.819 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 015165 343 ERKHKEE 349 (412)
Q Consensus 343 e~~~~e~ 349 (412)
+|..+|+
T Consensus 432 er~~kee 438 (708)
T KOG3654|consen 432 ERAPKEE 438 (708)
T ss_pred hhcchhh
Confidence 3433333
No 197
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=44.67 E-value=1.8e+02 Score=24.14 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=9.7
Q ss_pred CcEEEEEEe-CCCCCChhHHH
Q 015165 186 FKLLFVYLH-SPDHPDTPAFC 205 (412)
Q Consensus 186 ~K~LlVyLh-~~~~~~s~~F~ 205 (412)
+|+++||+. +.+|..|..-.
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~ 42 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTEL 42 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHH
Confidence 455555544 44555554433
No 198
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=44.29 E-value=1.1e+02 Score=31.34 Aligned_cols=14 Identities=29% Similarity=0.283 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 015165 310 QDAAYRAALEADQA 323 (412)
Q Consensus 310 QD~aY~~SL~~D~e 323 (412)
|..+-+.+|++-+|
T Consensus 307 QKle~e~~l~a~qe 320 (442)
T PF06637_consen 307 QKLEAEQGLQASQE 320 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555666554
No 199
>PTZ00256 glutathione peroxidase; Provisional
Probab=43.72 E-value=2.5e+02 Score=25.34 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=23.7
Q ss_pred CCCCce---EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 243 ASRYPF---CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 243 ~~~~P~---l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+..+|. ..||+.. ..|+.+..|..+.+.+...|...+
T Consensus 142 ~~~iP~~~~tflID~~----G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 142 ARQIPWNFAKFLIDGQ----GKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CcccCcceEEEEECCC----CCEEEEECCCCCHHHHHHHHHHHh
Confidence 445663 3556553 356777888888887766665544
No 200
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=43.69 E-value=2.4e+02 Score=26.03 Aligned_cols=38 Identities=13% Similarity=0.040 Sum_probs=28.6
Q ss_pred HHHhhCCCCCCceE-EEEeCCCCccceeeeeeecCCCHHHHHH
Q 015165 236 KMSNSLKASRYPFC-AVVMPAANQRIALLQQVEGPKSPEEMLM 277 (412)
Q Consensus 236 ~va~~l~~~~~P~l-~lI~~~~~~~~~vl~ri~G~~s~~~ll~ 277 (412)
.++..|++...|.- .||+.. ..|+.+..|..+.+++-.
T Consensus 136 ~v~~~~gv~~~P~T~fVIDk~----GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 136 AVKNAWQLNSEDSAIIVLDKT----GKVKFVKEGALSDSDIQT 174 (184)
T ss_pred hHHHhcCCCCCCceEEEECCC----CcEEEEEeCCCCHHHHHH
Confidence 35667888999887 677774 367888999998877644
No 201
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=43.23 E-value=2.4e+02 Score=27.13 Aligned_cols=76 Identities=25% Similarity=0.277 Sum_probs=45.8
Q ss_pred CChhHHHhhcCCChHHHHHHhcCeEEEec------ccCCh-------hHHHHHhhCCCCCCceEEEEeCCCCccceeeee
Q 015165 199 PDTPAFCEGTLCNEVLAAFVNENFVSWGG------SIRAS-------EGFKMSNSLKASRYPFCAVVMPAANQRIALLQQ 265 (412)
Q Consensus 199 ~~s~~F~r~vL~~~~v~~~l~~nfV~w~~------dv~~~-------Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~r 265 (412)
.++..-...+||..+=...++.+...... ...+. +.++++..++++.+|.+++.+.. + . +..
T Consensus 160 ~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~-G-~---~~~ 234 (251)
T PRK11657 160 PDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKD-G-T---LQQ 234 (251)
T ss_pred cchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC-C-C---EEE
Confidence 35555566788887655555542211110 00111 24567889999999999888753 2 1 223
Q ss_pred eecCCCHHHHHHHH
Q 015165 266 VEGPKSPEEMLMIL 279 (412)
Q Consensus 266 i~G~~s~~~ll~~L 279 (412)
+.|..++++|...|
T Consensus 235 v~G~~~~~~L~~~l 248 (251)
T PRK11657 235 VVGLPDPAQLAEIM 248 (251)
T ss_pred ecCCCCHHHHHHHh
Confidence 56999988877665
No 202
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=43.20 E-value=75 Score=28.67 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=16.6
Q ss_pred HHHhhCCCCCCceEEEEeCC
Q 015165 236 KMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~ 255 (412)
.+...|.+...|.+.+|.+.
T Consensus 106 ~l~~ky~v~~iP~l~i~~~d 125 (157)
T KOG2501|consen 106 KLSEKYEVKGIPALVILKPD 125 (157)
T ss_pred HHHHhcccCcCceeEEecCC
Confidence 45568999999999999874
No 203
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=42.37 E-value=1.3e+02 Score=30.62 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=58.6
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHH----HHhc-CeEEEecccCChhHHHHHhhCCCCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAA----FVNE-NFVSWGGSIRASEGFKMSNSLKASR 245 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~----~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~ 245 (412)
-..+|+. +.+..+.|+||+|.|-..+ ..-.++.-..+-|.+ .+.. .+-|...|.. .-..+|+.+++..
T Consensus 40 neKNfk~----~lKkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~--Kd~klAKKLgv~E 112 (383)
T PF01216_consen 40 NEKNFKR----ALKKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK--KDAKLAKKLGVEE 112 (383)
T ss_dssp -TTTHHH----HHHH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT--TTHHHHHHHT--S
T ss_pred chhHHHH----HHHhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccccCcceEEeccH--HHHHHHHhcCccc
Confidence 3445555 4456889999999876433 333333323333333 3333 5556666654 4467899999999
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
-+.+.+... +..++ ..|..+++.|+.-|...++
T Consensus 113 ~~SiyVfkd--~~~IE----ydG~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 113 EGSIYVFKD--GEVIE----YDGERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTEEEEEET--TEEEE----E-S--SHHHHHHHHHHHHS
T ss_pred cCcEEEEEC--CcEEE----ecCccCHHHHHHHHHHhcc
Confidence 999888765 32232 3489999999999998887
No 204
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=41.51 E-value=1.2e+02 Score=25.51 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=26.0
Q ss_pred cCcEEEEEEeCCCCCC-hhHHHhhcCCChHHHHHHhc----CeEEEecccC
Q 015165 185 VFKLLFVYLHSPDHPD-TPAFCEGTLCNEVLAAFVNE----NFVSWGGSIR 230 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~-s~~F~r~vL~~~~v~~~l~~----nfV~w~~dv~ 230 (412)
.+|+++|++...+|.. |......+ ..+.+-+.+ ++.+++.+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l---~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANL---AQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHH---HHHHHHhhHhhcCceEEEEEEEC
Confidence 5788889988888876 77665332 223332322 3666666553
No 205
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=40.23 E-value=85 Score=22.61 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
-++.|.|-|.+.....-+..+.=|++.|-|+-.||...+.
T Consensus 9 PedlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T PF11547_consen 9 PEDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp -HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhc
Confidence 4578899999998888789999999999999999988654
No 206
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=39.42 E-value=1.9e+02 Score=24.06 Aligned_cols=66 Identities=9% Similarity=-0.087 Sum_probs=40.5
Q ss_pred HHHHH---HhcCeEEEecccCChhHHHHHhhCCCCC--CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 213 VLAAF---VNENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 213 ~v~~~---l~~nfV~w~~dv~~~Eg~~va~~l~~~~--~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.|.+- .+..+.|-.+|.....+ +...++.+. +|.++++....+.+... ..+..+++.+.+-+...+
T Consensus 38 ~vAk~~~~~kgki~Fv~~d~~~~~~--~~~~fgl~~~~~P~i~i~~~~~~~Ky~~---~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 38 AVARQLISEKGAINFLTADGDKFRH--PLLHLGKTPADLPVIAIDSFRHMYLFPD---FEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred HHHHHHHhcCceEEEEEEechHhhh--HHHHcCCCHhHCCEEEEEcchhcCcCCC---CccccCHHHHHHHHHHHh
Confidence 45555 44567777777766555 777788776 99999998743222211 345567666555554443
No 207
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.00 E-value=6e+02 Score=28.49 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 015165 273 EEMLMILQKVIEESNPALLQARLDAEE 299 (412)
Q Consensus 273 ~~ll~~L~~~ie~~~~~L~~~r~er~e 299 (412)
.+.+.+|..-+.+...+|.+.|..++|
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~E 443 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQE 443 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 345567888888888888777765554
No 208
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=38.94 E-value=1.1e+02 Score=28.80 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=12.9
Q ss_pred HHHHhcCcEEEEEEeCCCCCCh
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDT 201 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s 201 (412)
..+++.+|=|-+.+|-+.++|-
T Consensus 68 edikkryRklSilVHPDKN~Dd 89 (250)
T KOG1150|consen 68 EDIKKRYRKLSILVHPDKNPDD 89 (250)
T ss_pred HHHHHHHHhhheeecCCCCccc
Confidence 3455556666666776665543
No 209
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=38.71 E-value=1.1e+02 Score=32.81 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=5.6
Q ss_pred HHHHHHHHHH
Q 015165 304 MRLREEQDAA 313 (412)
Q Consensus 304 R~lreeQD~a 313 (412)
..+++.|.+|
T Consensus 264 e~~~~~q~ea 273 (492)
T PF02029_consen 264 EKLQERQQEA 273 (492)
T ss_pred HHHHHHHHHh
Confidence 3566666544
No 210
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.17 E-value=6.2e+02 Score=28.39 Aligned_cols=11 Identities=36% Similarity=0.440 Sum_probs=6.7
Q ss_pred HHHHHHHHHHH
Q 015165 301 RNNMRLREEQD 311 (412)
Q Consensus 301 ~~~R~lreeQD 311 (412)
...|+|++||+
T Consensus 492 ~LEkrL~eE~~ 502 (697)
T PF09726_consen 492 QLEKRLAEERR 502 (697)
T ss_pred HHHHHHHHHHH
Confidence 34566777665
No 211
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.96 E-value=5.1e+02 Score=27.08 Aligned_cols=7 Identities=14% Similarity=0.207 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 015165 213 VLAAFVN 219 (412)
Q Consensus 213 ~v~~~l~ 219 (412)
.|++.|+
T Consensus 284 ~v~~~l~ 290 (440)
T KOG2357|consen 284 KVVSQLN 290 (440)
T ss_pred HHHHHHH
Confidence 4444444
No 212
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=36.23 E-value=1.8e+02 Score=24.44 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=36.1
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHH-HHhhCCCCCCceEEEEeC
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFK-MSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~-va~~l~~~~~P~l~lI~~ 254 (412)
.+.+++++.+.+|..|..-...+- .-..+|-+.++.+++.+..+.+... ....++ +|+-.+.++
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~--~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~---~~~p~~~D~ 88 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALS--KLLPELDALGVELVAVGPESPEKLEAFDKGKF---LPFPVYADP 88 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHH--HHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC---CCCeEEECC
Confidence 455666666788888887663321 1122233357888888887766543 333333 344444554
No 213
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.98 E-value=3.3e+02 Score=24.52 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015165 310 QDAAYRAALEADQARERQRREE 331 (412)
Q Consensus 310 QD~aY~~SL~~D~ek~~~r~ee 331 (412)
...+|++-|+.-+.+..+-+.|
T Consensus 63 l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 63 LNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888887776665554443
No 214
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=35.65 E-value=34 Score=35.49 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHH
Q 015165 160 ERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFC 205 (412)
Q Consensus 160 ~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~ 205 (412)
++-||...|-+---++.||++.-.+.-|+|..|+-+.++.--+.|.
T Consensus 334 eEIFGPiLPIi~v~~l~Eai~~In~~eKPLa~Y~Fs~n~~~vkr~l 379 (477)
T KOG2456|consen 334 EEIFGPILPIITVQSLDEAINFINEREKPLALYIFSNNEKLVKRFL 379 (477)
T ss_pred hhhccCccceeEhhhHHHHHHHHhcCCCceEEEEecCCHHHHHHHH
Confidence 5678999998877899999999999999999999986544444444
No 215
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=35.05 E-value=99 Score=27.26 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=34.8
Q ss_pred cCcEEEEEEeC-CCCCChhHH-HhhcCCChHHHHHHhcCe-EEEecccCChhHHH-HHhhCCC-CCCce
Q 015165 185 VFKLLFVYLHS-PDHPDTPAF-CEGTLCNEVLAAFVNENF-VSWGGSIRASEGFK-MSNSLKA-SRYPF 248 (412)
Q Consensus 185 e~K~LlVyLh~-~~~~~s~~F-~r~vL~~~~v~~~l~~nf-V~w~~dv~~~Eg~~-va~~l~~-~~~P~ 248 (412)
.+|++++|++- ..++-|..= .... ++..-+|-+.++ .+++.+.++.+..+ .+..++. ..||+
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~--~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~~~~f~l 94 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGY--VENADELKAKGVDEVICVSVNDPFVMKAWGKALGAKDKIRF 94 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHH--HHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCCCCcEEE
Confidence 45777777773 233443321 2111 122334444577 59999999888765 5666665 35553
No 216
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=6e+02 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=8.9
Q ss_pred HHHhhhHHHHHHHHH
Q 015165 282 VIEESNPALLQARLD 296 (412)
Q Consensus 282 ~ie~~~~~L~~~r~e 296 (412)
...+|+-+|.+.|.+
T Consensus 151 q~arYqD~larkr~~ 165 (630)
T KOG0742|consen 151 QRARYQDKLARKRYE 165 (630)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666654
No 217
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=33.78 E-value=3.8e+02 Score=24.65 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=11.9
Q ss_pred eEeecceecCCCCccccccc
Q 015165 390 QVIFFLIFFPLSSMIFPLTF 409 (412)
Q Consensus 390 ~v~~~~~RlP~G~ri~~~~~ 409 (412)
.|. +.|.+|++| ++-+
T Consensus 92 di~---ynFtdg~kI-K~iy 107 (177)
T PF09831_consen 92 DIA---YNFTDGNKI-KRIY 107 (177)
T ss_pred cee---EecCCCCEE-EEEE
Confidence 467 999999987 5433
No 218
>COG3122 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.05 E-value=4e+02 Score=24.67 Aligned_cols=17 Identities=12% Similarity=0.157 Sum_probs=12.5
Q ss_pred eEeecceecCCCCcccccccC
Q 015165 390 QVIFFLIFFPLSSMIFPLTFL 410 (412)
Q Consensus 390 ~v~~~~~RlP~G~ri~~~~~~ 410 (412)
.|. +-||+|..| +|-+.
T Consensus 128 Di~---~nF~d~~kI-KrI~V 144 (215)
T COG3122 128 DIG---FNFTDGNKI-KRIYV 144 (215)
T ss_pred cce---eeccCCCEe-EEEEe
Confidence 566 999999877 66543
No 219
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=32.90 E-value=1.2e+02 Score=32.28 Aligned_cols=97 Identities=14% Similarity=0.195 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
-..+|++.+. ...++||=++.|||..|+...-..-. --+-|.+ ..-+-..|.+.. ..+++.|.+..||
T Consensus 31 t~dnf~~~i~----~~~~vlVeFYAPWCghck~LaPey~k---AA~~Lke~~s~i~LakVDat~~--~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 31 TKDNFKETIN----GHEFVLVEFYAPWCGHCKALAPEYEK---AATELKEEGSPVKLAKVDATEE--SDLASKYEVRGYP 101 (493)
T ss_pred ecccHHHHhc----cCceEEEEEEchhhhhhhhhCcHHHH---HHHHhhccCCCceeEEeecchh--hhhHhhhcCCCCC
Confidence 4455555554 57889999999999999877632211 1123333 455666666544 8899999999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.+-|.-. | ++ .....|.-+++.++..|+.
T Consensus 102 TlkiFrn--G-~~--~~~Y~G~r~adgIv~wl~k 130 (493)
T KOG0190|consen 102 TLKIFRN--G-RS--AQDYNGPREADGIVKWLKK 130 (493)
T ss_pred eEEEEec--C-Cc--ceeccCcccHHHHHHHHHh
Confidence 9988764 2 22 3345688888888887763
No 220
>COG1422 Predicted membrane protein [Function unknown]
Probab=32.25 E-value=3.1e+02 Score=25.73 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015165 301 RNNMRLREEQDAAYRAA 317 (412)
Q Consensus 301 ~~~R~lreeQD~aY~~S 317 (412)
++.+...+++.+|+++-
T Consensus 79 k~m~efq~e~~eA~~~~ 95 (201)
T COG1422 79 KMMKEFQKEFREAQESG 95 (201)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34445555555555543
No 221
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=31.83 E-value=1.4e+02 Score=30.09 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=58.6
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
.-.++|.++.+||.-|+.+. -++. +.-..|.. ++=|+||.--.+.+. .+++.|.+++||.+=|+-. |.-|+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~-piF~-EAa~~~~~e~P~~kvvwg~VDcd~e~-~ia~ky~I~KyPTlKvfrn--G~~~~- 86 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLK-PIFE-EAAAKFKQEFPEGKVVWGKVDCDKED-DIADKYHINKYPTLKVFRN--GEMMK- 86 (375)
T ss_pred ceEEeeeeehhhchHHHHHh-HHHH-HHHHHHHHhCCCcceEEEEcccchhh-HHhhhhccccCceeeeeec--cchhh-
Confidence 56789999999998887554 4442 22222333 266899855444444 3688999999999988764 21111
Q ss_pred eeeeecCCCHHHHHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~i 283 (412)
.-..|.-+++.|++.+..-+
T Consensus 87 -rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 87 -REYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred -hhhccchhHHHHHHHHHHHh
Confidence 12457778888777765544
No 222
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=31.72 E-value=8.1e+02 Score=27.82 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 272 PEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVE 351 (412)
Q Consensus 272 ~~~ll~~L~~~ie~~~~~L~~~r~er~er~~~R~lreeQD~aY~~SL~~D~ek~~~r~ee~er~~~~~~e~e~~~~e~ee 351 (412)
|+++++.-...+......+...-.+-++. .+.+.++.+++=+.--+.++.+.+-.++.++-+++.+...++.+++.++
T Consensus 500 p~~ii~~A~~~~~~~~~~~~~li~~l~~~--~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~ 577 (782)
T PRK00409 500 PENIIEEAKKLIGEDKEKLNELIASLEEL--ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQ 577 (782)
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015165 352 AREREAREAAEREAALAK 369 (412)
Q Consensus 352 ~~~~~~~e~~~~~~~~~~ 369 (412)
.-+++.++.++-.+.+.+
T Consensus 578 ~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 578 AIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHH
No 223
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=31.57 E-value=1.8e+02 Score=20.83 Aligned_cols=52 Identities=8% Similarity=0.061 Sum_probs=32.1
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChh--HHHHHhhCCCCCCceEEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASE--GFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~E--g~~va~~l~~~~~P~l~l 251 (412)
+..+++++|..|... ..++++ ++-+...|+++.. ...+...++...+|.+.+
T Consensus 2 i~lf~~~~C~~C~~~----------~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKA----------KEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHH----------HHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 345566777777643 333443 4555667776533 334567789999998765
No 224
>PF06212 GRIM-19: GRIM-19 protein; InterPro: IPR009346 This family consists of several eukaryotic gene associated with retinoic-interferon-induced mortality 19 (GRIM-19) proteins. GRIM-19, was reported to encode a small protein primarily distributed in the nucleus and was able to promote cell death induced by IFN-beta and RA. A bovine homologue of GRIM-19 was co-purified with mitochondrial NADH:ubiquinone oxidoreductase (complex I) in bovine heart. Therefore, its exact cellular localisation and function are unclear. It has now been discovered that GRIM-19 is a specific interacting protein which negatively regulates Stat3 activity [].
Probab=31.08 E-value=3.6e+02 Score=23.51 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015165 305 RLREEQDAAYRAALEADQARE 325 (412)
Q Consensus 305 ~lreeQD~aY~~SL~~D~ek~ 325 (412)
.|-.|+|+.|-+.+++++++|
T Consensus 73 lLqAE~DR~~lr~~~~~~~~E 93 (130)
T PF06212_consen 73 LLQAEEDRRYLRRLKANREEE 93 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666543
No 225
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=31.07 E-value=72 Score=32.02 Aligned_cols=72 Identities=15% Similarity=0.336 Sum_probs=47.8
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCC------------------ChhHHHhhcCCChHH---HHHHhc---CeE
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHP------------------DTPAFCEGTLCNEVL---AAFVNE---NFV 223 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~------------------~s~~F~r~vL~~~~v---~~~l~~---nfV 223 (412)
-.|+.-+...||.+||.-+..|+|=+|+++.. .+-.+|.+|..+-.. .+++++ +||
T Consensus 17 fDm~HyGHanaLrQAkalGdkLivGVHsDeeI~~nKGpPV~t~eERy~~v~~ikWVDEVV~~APyvtt~~~md~y~cd~v 96 (358)
T KOG2803|consen 17 FDMVHYGHANALRQAKALGDKLIVGVHSDEEITLNKGPPVFTDEERYEMVKAIKWVDEVVEGAPYVTTLEWMDKYGCDYV 96 (358)
T ss_pred hhhhhhhhhHHHHHHHHhCCeEEEEecchHHHHhcCCCCcccHHHHHHHHhhcchhhhhhcCCCeeccHHHHHHhCCeEE
Confidence 45666677899999999999999999997642 333455555544322 245554 678
Q ss_pred EEecccC-Ch---hHHHHHh
Q 015165 224 SWGGSIR-AS---EGFKMSN 239 (412)
Q Consensus 224 ~w~~dv~-~~---Eg~~va~ 239 (412)
+=|-|++ ++ ++|.+++
T Consensus 97 vHGdDit~~a~G~D~Y~~vK 116 (358)
T KOG2803|consen 97 VHGDDITLDADGLDCYRLVK 116 (358)
T ss_pred EeCCcceecCCCccHHHHHH
Confidence 8888865 33 4455554
No 226
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=30.87 E-value=59 Score=23.28 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=18.7
Q ss_pred ChHHHHHHHHhCCCCHHHHHhhh
Q 015165 19 DPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 19 ~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
++.....||.+-+||++.|+..+
T Consensus 30 ~d~~llRFLRARkf~v~~A~~mL 52 (55)
T PF03765_consen 30 DDNFLLRFLRARKFDVEKAFKML 52 (55)
T ss_dssp SHHHHHHHHHHTTT-HHHHHHHH
T ss_pred CHHHHHHHHHHccCCHHHHHHHH
Confidence 33579999999999999999865
No 227
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=30.33 E-value=78 Score=27.30 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=28.1
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhh
Q 015165 6 DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (412)
Q Consensus 6 ~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~ 40 (412)
+.|.=-++=||.+. +.|+..|+.+|.||-.||=+
T Consensus 86 eDIkLV~eQa~Vsr-eeA~kAL~e~~GDlaeAIm~ 119 (122)
T COG1308 86 EDIKLVMEQAGVSR-EEAIKALEEAGGDLAEAIMK 119 (122)
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHcCCcHHHHHHH
Confidence 44555567789888 89999999999999999854
No 228
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=67 Score=32.22 Aligned_cols=35 Identities=26% Similarity=0.212 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHh
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAIS 39 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~ 39 (412)
..+.|.++.+=||.+ +..|+.-|+.|||||..|..
T Consensus 46 ~~allk~LR~kTgas-~~ncKkALee~~gDl~~A~~ 80 (340)
T KOG1071|consen 46 SKALLKKLREKTGAS-MVNCKKALEECGGDLVLAEE 80 (340)
T ss_pred cHHHHHHHHHHcCCc-HHHHHHHHHHhCCcHHHHHH
Confidence 457889999999955 48999999999999998754
No 229
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.98 E-value=55 Score=32.45 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=30.3
Q ss_pred HHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 10 YFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 10 ~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
=.+++||++. +.|..+|+.++|++-.||-....+
T Consensus 241 i~~~~~~~~~-~~a~~~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 241 IVMEATGVSR-EEAEAALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHHHCcCH-HHHHHHHHHhCCCcHHHHHHHHhC
Confidence 3889999888 899999999999999999887654
No 230
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=29.92 E-value=3e+02 Score=22.89 Aligned_cols=84 Identities=10% Similarity=0.021 Sum_probs=48.1
Q ss_pred CcEEEEEEeCC---CCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhHHHHHhhCCCC--C--CceEEEEeCCCC
Q 015165 186 FKLLFVYLHSP---DHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEGFKMSNSLKAS--R--YPFCAVVMPAAN 257 (412)
Q Consensus 186 ~K~LlVyLh~~---~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg~~va~~l~~~--~--~P~l~lI~~~~~ 257 (412)
..++++|+--+ ...+.+.+...+ .+|.+-.+ ..++|-..|+.+..+ +...|+.+ . +|.++|+... +
T Consensus 15 ~~l~~~~~~~~~~~~~~~~~~~~~~~---~~vAk~fk~gki~Fv~~D~~~~~~--~l~~fgl~~~~~~~P~~~i~~~~-~ 88 (111)
T cd03073 15 KPLVVAYYNVDYSKNPKGTNYWRNRV---LKVAKDFPDRKLNFAVADKEDFSH--ELEEFGLDFSGGEKPVVAIRTAK-G 88 (111)
T ss_pred CCeEEEEEeccccCChhHHHHHHHHH---HHHHHHCcCCeEEEEEEcHHHHHH--HHHHcCCCcccCCCCEEEEEeCC-C
Confidence 44577776442 334445555333 25666666 466666677765544 66778776 4 9999998752 3
Q ss_pred ccceeeeeeecCC-CHHHHHHHH
Q 015165 258 QRIALLQQVEGPK-SPEEMLMIL 279 (412)
Q Consensus 258 ~~~~vl~ri~G~~-s~~~ll~~L 279 (412)
.+.. ..+.. +++.+..-+
T Consensus 89 ~KY~----~~~~~~t~e~i~~F~ 107 (111)
T cd03073 89 KKYV----MEEEFSDVDALEEFL 107 (111)
T ss_pred CccC----CCcccCCHHHHHHHH
Confidence 2332 33445 655554433
No 231
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=29.42 E-value=90 Score=31.02 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=34.1
Q ss_pred Ccc-HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhh
Q 015165 1 MVD-VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (412)
Q Consensus 1 m~~-~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~ 42 (412)
|++ -.+.|..+.+.|| -.+-.|...|+.++.|+|.||.--=
T Consensus 1 m~~ita~~VKeLRe~Tg-AGMmdCKkAL~E~~Gd~EkAie~LR 42 (296)
T COG0264 1 MAEITAALVKELREKTG-AGMMDCKKALEEANGDIEKAIEWLR 42 (296)
T ss_pred CCcccHHHHHHHHHHhC-CcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 444 5678889999999 4557999999999999999997653
No 232
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=28.86 E-value=2.6e+02 Score=21.20 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=36.7
Q ss_pred EeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeec-CC
Q 015165 193 LHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG-PK 270 (412)
Q Consensus 193 Lh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G-~~ 270 (412)
+.+++|..|..... .+.+.+++ ++-+ ++.+.+...-...|++.+.|.+ +|++ ++ +..| ..
T Consensus 5 v~~~~C~~C~~~~~------~~~~~~~~~~i~~---ei~~~~~~~~~~~ygv~~vPal-vIng----~~----~~~G~~p 66 (76)
T PF13192_consen 5 VFSPGCPYCPELVQ------LLKEAAEELGIEV---EIIDIEDFEEIEKYGVMSVPAL-VING----KV----VFVGRVP 66 (76)
T ss_dssp EECSSCTTHHHHHH------HHHHHHHHTTEEE---EEEETTTHHHHHHTT-SSSSEE-EETT----EE----EEESS--
T ss_pred EeCCCCCCcHHHHH------HHHHHHHhcCCeE---EEEEccCHHHHHHcCCCCCCEE-EECC----EE----EEEecCC
Confidence 35777998886552 23333433 3222 3333333333489999999998 5554 22 2457 55
Q ss_pred CHHHHHHHH
Q 015165 271 SPEEMLMIL 279 (412)
Q Consensus 271 s~~~ll~~L 279 (412)
+.++|.+.|
T Consensus 67 ~~~el~~~l 75 (76)
T PF13192_consen 67 SKEELKELL 75 (76)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHh
Confidence 666655444
No 233
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.77 E-value=1.4e+02 Score=21.39 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=22.3
Q ss_pred HHHHHHhc-CeEEEecccCCh-hHHH-HHhhCCCCCCceEEE
Q 015165 213 VLAAFVNE-NFVSWGGSIRAS-EGFK-MSNSLKASRYPFCAV 251 (412)
Q Consensus 213 ~v~~~l~~-nfV~w~~dv~~~-Eg~~-va~~l~~~~~P~l~l 251 (412)
.+.++|++ ++=+=..|+++. +..+ +....+..++|.+.+
T Consensus 14 ~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred HHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 45667775 333334455443 3333 334449999998874
No 234
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=5.8e+02 Score=25.20 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHHHHHh
Q 015165 270 KSPEEMLMILQKVIEE 285 (412)
Q Consensus 270 ~s~~~ll~~L~~~ie~ 285 (412)
.+.++.-..+..+++.
T Consensus 84 ls~eE~~~~~~~i~ek 99 (290)
T KOG2689|consen 84 LSEEEKKAQTKRILEK 99 (290)
T ss_pred cChHHHHHHHHHHHHH
Confidence 4555655555555544
No 235
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=28.17 E-value=19 Score=33.35 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHH
Q 015165 370 MRQEKA 375 (412)
Q Consensus 370 ~r~~~~ 375 (412)
+..|+.
T Consensus 75 y~k~K~ 80 (188)
T PF09756_consen 75 YEKWKS 80 (188)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 333444
No 236
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=27.97 E-value=6.5e+02 Score=25.48 Aligned_cols=9 Identities=22% Similarity=0.656 Sum_probs=4.6
Q ss_pred eEEEecccC
Q 015165 222 FVSWGGSIR 230 (412)
Q Consensus 222 fV~w~~dv~ 230 (412)
+++|+.+-+
T Consensus 28 lLIwgS~~~ 36 (387)
T COG3064 28 LLIWGSLDE 36 (387)
T ss_pred HHHHhhhhh
Confidence 345665544
No 237
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=27.81 E-value=5.7e+02 Score=24.81 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015165 358 REAAEREAALAKMRQEKAL 376 (412)
Q Consensus 358 ~e~~~~~~~~~~~r~~~~~ 376 (412)
+++++++..-..+..|+..
T Consensus 214 e~~eRk~~ae~A~~~Wl~~ 232 (264)
T PF13904_consen 214 EEQERKEQAEEAFQKWLKN 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444566667653
No 238
>PRK00304 hypothetical protein; Provisional
Probab=27.65 E-value=1.7e+02 Score=23.13 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH---hcCcEEEEEEeCCCCCChhHHHhhcC
Q 015165 151 EAMEFVAVFERDYGNVKPNFVSEGFMDALQRSR---SVFKLLFVYLHSPDHPDTPAFCEGTL 209 (412)
Q Consensus 151 ~~~~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak---~e~K~LlVyLh~~~~~~s~~F~r~vL 209 (412)
+-.+-+.+|-.+.|..--. ..++.+.+..++ +.++.++| +|+.|..|+.+.++-+
T Consensus 12 TL~nLIeefv~ReGTDyg~--E~sL~~kv~qv~~qL~~G~~vIv--fse~~es~~i~~k~~~ 69 (75)
T PRK00304 12 TLTRLIEDFVTRDGTDNGD--ETPLETRVLRVRQALTKGQAVIL--FDPESQQCQLMLKHDV 69 (75)
T ss_pred HHHHHHHHHHhccCccCcc--cccHHHHHHHHHHHHHcCCEEEE--ECCCcceeeeeeHhhc
Confidence 4477899999999875333 778999988887 55665554 5677877776665544
No 239
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=27.62 E-value=6.1e+02 Score=25.06 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=8.7
Q ss_pred HHHHHhhhHHHHHHHHH
Q 015165 280 QKVIEESNPALLQARLD 296 (412)
Q Consensus 280 ~~~ie~~~~~L~~~r~e 296 (412)
.....+|...|.+.|.+
T Consensus 105 ~~q~aqY~D~LaRkR~~ 121 (276)
T PF12037_consen 105 KQQRAQYEDELARKRYQ 121 (276)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 240
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=27.45 E-value=4.8e+02 Score=23.79 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHH
Q 015165 269 PKSPEEMLMILQKVIEESNPALLQARLDAEE-------RRNNMRL---REEQDAAYRAALEAD 321 (412)
Q Consensus 269 ~~s~~~ll~~L~~~ie~~~~~L~~~r~er~e-------r~~~R~l---reeQD~aY~~SL~~D 321 (412)
.++++++. .|......|...+.+.|..=.+ ....-.+ ++++++.+++.++.-
T Consensus 20 ~~~~~E~~-el~~~~~~Yr~~m~alR~~f~ee~~~~~~~~~~~~~~~~~~~ee~E~~~l~a~N 81 (170)
T PF14943_consen 20 PVDPEEVK-ELKRRYNNYRTQMRALRSEFREEVLRKKYEEEAGSLAETKEEEEEEHRRLMAWN 81 (170)
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 45677653 4555666677667666543111 0111223 556666666666543
No 241
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1.9e+02 Score=30.86 Aligned_cols=89 Identities=18% Similarity=0.096 Sum_probs=59.8
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
.+..+.|=+||=+|.|||..|..+. -++ +++.+.+.+ |.|+-.+|++.-|-- .++++.||.|++.-....
T Consensus 379 iv~de~KdVLvEfyAPWCgHCk~la-P~~--eeLAe~~~~~~~vviAKmDaTaNd~~----~~~~~~fPTI~~~pag~k- 450 (493)
T KOG0190|consen 379 IVLDEGKDVLVEFYAPWCGHCKALA-PIY--EELAEKYKDDENVVIAKMDATANDVP----SLKVDGFPTILFFPAGHK- 450 (493)
T ss_pred HhhccccceEEEEcCcccchhhhhh-hHH--HHHHHHhcCCCCcEEEEeccccccCc----cccccccceEEEecCCCC-
Confidence 4567888899999999999999988 333 466666654 788888999855432 245677999987754322
Q ss_pred cceeeeeeecCCCHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L 279 (412)
-.++ ...|.-+.+.|...+
T Consensus 451 -~~pv-~y~g~R~le~~~~fi 469 (493)
T KOG0190|consen 451 -SNPV-IYNGDRTLEDLKKFI 469 (493)
T ss_pred -CCCc-ccCCCcchHHHHhhh
Confidence 1121 125666766665554
No 242
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=26.40 E-value=32 Score=32.32 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhh
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEG 207 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~ 207 (412)
.|++|++.|+.+ .+||+|.|-......|..+
T Consensus 45 ~yN~a~~~a~~~---ylvflHqDv~i~~~~~l~~ 75 (217)
T PF13712_consen 45 AYNEAMEKAKAK---YLVFLHQDVFIINENWLED 75 (217)
T ss_dssp HHHHHGGG--SS---EEEEEETTEE-SSHHHHHH
T ss_pred HHHHHHHhCCCC---EEEEEeCCeEEcchhHHHH
Confidence 466666665544 8999998776666777743
No 243
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=26.26 E-value=92 Score=28.57 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
-+++.+.++.+++.+|.+ |+|-| ++..+=.|+.-++||.+.+=..|.-.+.+.-.+.|+.++..+.=-+++
T Consensus 30 I~~l~~~v~~~~~~gK~v--fVHiD-------li~Gl~~D~~~i~~L~~~~~~dGIISTk~~~i~~Ak~~gl~tIqRiFl 100 (175)
T PF04309_consen 30 IGNLKDIVKRLKAAGKKV--FVHID-------LIEGLSRDEAGIEYLKEYGKPDGIISTKSNLIKRAKKLGLLTIQRIFL 100 (175)
T ss_dssp CCCHHHHHHHHHHTT-EE--EEECC-------GEETB-SSHHHHHHHHHTT--SEEEESSHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHcCCEE--EEEeh-------hcCCCCCCHHHHHHHHHcCCCcEEEeCCHHHHHHHHHcCCEEEEEeee
Confidence 467999999999999965 45654 666666777888888877766666666777777777766554444444
Q ss_pred Ee
Q 015165 252 VM 253 (412)
Q Consensus 252 I~ 253 (412)
++
T Consensus 101 iD 102 (175)
T PF04309_consen 101 ID 102 (175)
T ss_dssp SS
T ss_pred ec
Confidence 44
No 244
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=25.81 E-value=7.4e+02 Score=25.43 Aligned_cols=68 Identities=24% Similarity=0.226 Sum_probs=42.4
Q ss_pred CcEEEEEEeCCCCCChhHHHhhcCCCh--HHH---------HHHhc---CeEEEecccCChhHHHHHhhCCC-----CCC
Q 015165 186 FKLLFVYLHSPDHPDTPAFCEGTLCNE--VLA---------AFVNE---NFVSWGGSIRASEGFKMSNSLKA-----SRY 246 (412)
Q Consensus 186 ~K~LlVyLh~~~~~~s~~F~r~vL~~~--~v~---------~~l~~---nfV~w~~dv~~~Eg~~va~~l~~-----~~~ 246 (412)
.+-+.||+.+ +++++..+.+.+|.+. .|+ ++..+ +.|+.-..+-..+|+.|++.++. ...
T Consensus 12 ~~~~~vl~vD-D~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 12 DEKLTVLLVD-DEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred cccceEEEec-CchhHHHHHHHHHHhcccceeeecCchHHHHHhcccCCceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 3456777774 5677777887877665 121 22222 44555555556679999887653 457
Q ss_pred ceEEEEeC
Q 015165 247 PFCAVVMP 254 (412)
Q Consensus 247 P~l~lI~~ 254 (412)
|++++.+.
T Consensus 91 p~i~lT~~ 98 (360)
T COG3437 91 PVILLTAY 98 (360)
T ss_pred ceEEEeec
Confidence 87777664
No 245
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=25.74 E-value=6.3e+02 Score=28.71 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015165 300 RRNNMRLREEQDAAYRAA 317 (412)
Q Consensus 300 r~~~R~lreeQD~aY~~S 317 (412)
.-.+|+.|.-|-+-|..+
T Consensus 381 ~lC~REarr~~~rs~K~~ 398 (1185)
T KOG0388|consen 381 ILCAREARRWQSRSYKTS 398 (1185)
T ss_pred HHHHHHHHHhhhccccCc
Confidence 345677777777666544
No 246
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=25.34 E-value=8.7e+02 Score=26.12 Aligned_cols=25 Identities=8% Similarity=0.128 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHhhhHHHHHHHH
Q 015165 271 SPEEMLMILQKVIEESNPALLQARL 295 (412)
Q Consensus 271 s~~~ll~~L~~~ie~~~~~L~~~r~ 295 (412)
..+.++..+..-+......|...+.
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAELKE 272 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666555555554433
No 247
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=25.17 E-value=2.8e+02 Score=20.73 Aligned_cols=50 Identities=8% Similarity=-0.014 Sum_probs=29.5
Q ss_pred EEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCCh-hHH--HHHhhCCCCCCceEE
Q 015165 191 VYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRAS-EGF--KMSNSLKASRYPFCA 250 (412)
Q Consensus 191 VyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~-Eg~--~va~~l~~~~~P~l~ 250 (412)
+.++.++|+.|.. +..+|++ .|-++-.+..+. +.. .+.+..+..++|.+.
T Consensus 3 ~~y~~~~Cp~C~~----------~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 3 VVFSKSYCPYCKR----------AKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEcCCCHHHHH----------HHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 4455567776663 3344443 566666666543 222 345667889999973
No 248
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.15 E-value=1.4e+02 Score=28.08 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=35.9
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 234 GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 234 g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+..+.+.+++..||.+++... .+|.+|..-.=.-+++.++..|.+.+
T Consensus 163 ~r~l~~rlg~~GfPTl~le~n---g~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 163 SRRLMQRLGAAGFPTLALERN---GTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHHhccCCCCeeeeeeC---CceEeccCCcccCCcHHHHHHHHHHH
Confidence 467788999999999998873 36888865222668899999887654
No 249
>PF12210 Hrs_helical: Hepatocyte growth factor-regulated tyrosine kinase substrate; InterPro: IPR024641 This domain comprises the helical region of hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). It is approximately 100 amino acids in length. Hrs, together with signal transducing adaptor molecule (STAM), forms the ESCRT-0 complex, which sorts ubiquitinated cell surface receptors to lysosomes for degradation []. ; PDB: 3F1I_H.
Probab=24.75 E-value=4e+02 Score=22.02 Aligned_cols=48 Identities=19% Similarity=0.312 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 272 PEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQARERQRRE 330 (412)
Q Consensus 272 ~~~ll~~L~~~ie~~~~~L~~~r~er~er~~~R~lreeQD~aY~~SL~~D~ek~~~r~e 330 (412)
.|.-+..|-..+....|.|..--.+. +..+.|.++|+-+-...++.|+
T Consensus 30 nDsaVqsLF~~lt~mH~~LL~~i~~~-----------ee~R~~~E~lQdkL~qi~eAR~ 77 (96)
T PF12210_consen 30 NDSAVQSLFQTLTAMHPQLLKYIQEQ-----------EEKRVYYEGLQDKLAQIKEARA 77 (96)
T ss_dssp G-HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555445555556565432222 3457799999877666555443
No 250
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=24.37 E-value=1.7e+02 Score=33.13 Aligned_cols=41 Identities=44% Similarity=0.528 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 318 LEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAAL 367 (412)
Q Consensus 318 L~~D~ek~~~r~ee~er~~~~~~e~e~~~~e~ee~~~~~~~e~~~~~~~~ 367 (412)
++++.|.++.|+++ |.+++.+++.|..++++.|..+|.+++
T Consensus 990 ~ea~~en~krRee~---------Ek~rr~k~a~eqseqEr~erQqrk~al 1030 (1102)
T KOG1924|consen 990 LEAVAENEKRREEE---------EKERRAKLAKEQSEQERLERQQRKKAL 1030 (1102)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHhhhhHHH
No 251
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.30 E-value=2.9e+02 Score=29.58 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=28.3
Q ss_pred HHHHHHh---cCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 213 VLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 213 ~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.|++|+. +++..+.++..+-+--.+|+.|+.-.+|.+.
T Consensus 413 AFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~YgLl~lP~M~ 453 (567)
T KOG0345|consen 413 AFVSHVRAYKKHHCSYIFRLKDLDLGKLATLYGLLRLPKMP 453 (567)
T ss_pred HHHHHHHHHhhcceeEEEeecCCcHHHHHHHHHHHhCCCcH
Confidence 4556665 3777888888888888889988888888643
No 252
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.74 E-value=6e+02 Score=23.63 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=2.8
Q ss_pred hHHHHHH
Q 015165 287 NPALLQA 293 (412)
Q Consensus 287 ~~~L~~~ 293 (412)
++..+..
T Consensus 74 dpd~v~~ 80 (190)
T PF06936_consen 74 DPDVVVR 80 (190)
T ss_dssp SHHHHHH
T ss_pred ChhHHHH
Confidence 3444433
No 253
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=23.27 E-value=5.7e+02 Score=23.22 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 015165 309 EQDAAYRAALEADQAR 324 (412)
Q Consensus 309 eQD~aY~~SL~~D~ek 324 (412)
+....|++.|..-+..
T Consensus 83 ~~~~eye~~L~~Ar~E 98 (181)
T PRK13454 83 EAEKAYNKALADARAE 98 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456677776655443
No 254
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=23.12 E-value=8e+02 Score=24.91 Aligned_cols=70 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 295 LDAEERRNNMRLREEQDAAYRAALEADQARERQRREEQERLEREAAEAERKHKEEVEAREREAREAAEREAA 366 (412)
Q Consensus 295 ~er~er~~~R~lreeQD~aY~~SL~~D~ek~~~r~ee~er~~~~~~e~e~~~~e~ee~~~~~~~e~~~~~~~ 366 (412)
...+.......++++|..+=++--.. ++|.....+.. ..+......+.++++.+|.+.+++.|...+.+.
T Consensus 69 r~~~~~~~a~~~~~~~~~eq~r~~~l-~~~~~~~~~~k-~ae~a~k~~~~~~kqa~e~~~k~~~e~~~kaea 138 (346)
T TIGR02794 69 RQKKLEQQAEEAEKQRAAEQARQKEL-EQRAAAEKAAK-QAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEA 138 (346)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 255
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.71 E-value=2e+02 Score=29.19 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=60.8
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
......||-++.|+|..|+.+. ..| ..+...+. .++-++..|.+ -...+++.+.+..||.+.+..+. + .
T Consensus 160 ~~~~~~lv~f~aPwc~~ck~l~-~~~--~~~a~~~~~~~~v~~~~~d~~--~~~~~~~~~~v~~~Pt~~~f~~~-~-~-- 230 (383)
T KOG0191|consen 160 DSDADWLVEFYAPWCGHCKKLA-PEW--EKLAKLLKSKENVELGKIDAT--VHKSLASRLEVRGYPTLKLFPPG-E-E-- 230 (383)
T ss_pred ccCcceEEEEeccccHHhhhcC-hHH--HHHHHHhccCcceEEEeeccc--hHHHHhhhhcccCCceEEEecCC-C-c--
Confidence 4455566777999999777663 222 23444444 46667777776 56677889999999999666553 2 1
Q ss_pred eeeeeecCCCHHHHHHHHHHHHHh
Q 015165 262 LLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
....-.|.-+.+.+++.+......
T Consensus 231 ~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 231 DIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred ccccccccccHHHHHHHHHhhcCC
Confidence 233345667788888777766655
No 256
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=22.65 E-value=8.7e+02 Score=25.15 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCC
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLK 242 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~ 242 (412)
.-++++.||.++|.-.|=+ +-|+.+..|.+-+...+ .+|++- ||+.|---.. .+|+.+|.+.+
T Consensus 132 ~~df~~kak~eGkIr~~GF--SfHgs~e~~~~iv~a~~--~dfvqlq~ny~d~~n~~~-~~~l~~A~~~~ 196 (391)
T COG1453 132 VFDFLEKAKAEGKIRNAGF--SFHGSTEVFKEIVDAYP--WDFVQLQYNYIDQKNQAG-TEGLKYAASKG 196 (391)
T ss_pred hHHHHHHHHhcCcEEEeee--cCCCCHHHHHHHHhcCC--cceEEeeeeeeccchhcc-cHHHHHHHhCC
Confidence 6789999999998655443 34667777776555555 566553 5665533222 58888887654
No 257
>KOG2441 consensus mRNA splicing factor/probable chromatin binding snw family nuclear protein [RNA processing and modification; Chromatin structure and dynamics]
Probab=22.34 E-value=5.4e+02 Score=26.80 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=6.7
Q ss_pred hcCCChHHHHHHh
Q 015165 207 GTLCNEVLAAFVN 219 (412)
Q Consensus 207 ~vL~~~~v~~~l~ 219 (412)
+.+.+..++..+.
T Consensus 185 ~sg~kqriIrmVe 197 (506)
T KOG2441|consen 185 NSGSKQRIIRMVE 197 (506)
T ss_pred hhcchhhhhhhhh
Confidence 4445555555554
No 258
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=21.50 E-value=3.8e+02 Score=24.26 Aligned_cols=83 Identities=14% Similarity=0.163 Sum_probs=48.9
Q ss_pred cEEEEEEeCCC--CCChhHHHhhcCCChHHHHHHhc---Ce-E---EEecccCChhHHHHHhhCCCCCCceEEEEeCCCC
Q 015165 187 KLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVNE---NF-V---SWGGSIRASEGFKMSNSLKASRYPFCAVVMPAAN 257 (412)
Q Consensus 187 K~LlVyLh~~~--~~~s~~F~r~vL~~~~v~~~l~~---nf-V---~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~ 257 (412)
+.=+.|++-+- |.++..-...+||..+-.+.+.+ +. . .=.|+..-.+...++..+++...|.+.+-.+
T Consensus 105 ~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~~~G--- 181 (197)
T cd03020 105 GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPVAANLALGRQLGVNGTPTIVLADG--- 181 (197)
T ss_pred ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchHHHHHHHHHHcCCCcccEEEECCC---
Confidence 34444444433 35677778889998765444442 11 1 1123333345667889999999999863222
Q ss_pred ccceeeeeeecCCCHHHHHHH
Q 015165 258 QRIALLQQVEGPKSPEEMLMI 278 (412)
Q Consensus 258 ~~~~vl~ri~G~~s~~~ll~~ 278 (412)
. + +.|..++++|...
T Consensus 182 -~--~---~~G~~~~~~l~~~ 196 (197)
T cd03020 182 -R--V---VPGAPPAAQLEAL 196 (197)
T ss_pred -e--E---ecCCCCHHHHHhh
Confidence 1 1 4588887776543
No 259
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=21.43 E-value=4e+02 Score=22.40 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
..+.+.|++..-.|-+++.+..| .+-.+..++.+++++...+.
T Consensus 67 ~~lr~~l~~~~~~f~~vLiGKDG---~vK~r~~~p~~~~~lf~~ID 109 (118)
T PF13778_consen 67 QALRKRLRIPPGGFTVVLIGKDG---GVKLRWPEPIDPEELFDTID 109 (118)
T ss_pred HHHHHHhCCCCCceEEEEEeCCC---cEEEecCCCCCHHHHHHHHh
Confidence 36677888776666666665544 23334556788888877664
No 260
>PLN02316 synthase/transferase
Probab=21.33 E-value=4.8e+02 Score=30.74 Aligned_cols=7 Identities=0% Similarity=0.154 Sum_probs=3.6
Q ss_pred CCceeEe
Q 015165 386 PNVTQVI 392 (412)
Q Consensus 386 ~~~~~v~ 392 (412)
.+.++|-
T Consensus 328 G~~v~ly 334 (1036)
T PLN02316 328 GDTVKLY 334 (1036)
T ss_pred CCEEEEE
Confidence 3445655
No 261
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=20.60 E-value=5.1e+02 Score=21.72 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=27.9
Q ss_pred EecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCC
Q 015165 225 WGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKS 271 (412)
Q Consensus 225 w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s 271 (412)
+++-+.....-.++..|++..+|.++++-. + ..++.+.|..+
T Consensus 62 ~~avv~~~~e~~L~~r~gv~~~PaLvf~R~--g---~~lG~i~gi~d 103 (107)
T PF07449_consen 62 RGAVVARAAERALAARFGVRRWPALVFFRD--G---RYLGAIEGIRD 103 (107)
T ss_dssp EEEEEEHHHHHHHHHHHT-TSSSEEEEEET--T---EEEEEEESSST
T ss_pred ceEEECchhHHHHHHHhCCccCCeEEEEEC--C---EEEEEecCeec
Confidence 444444556667889999999999988875 2 34555666543
No 262
>PF10044 Ret_tiss: Retinal tissue protein; InterPro: IPR018737 Rtp is a family of proteins of approximately 112 amino acids in length which is conserved from nematodes to humans. The proposed tertiary structure is of almost entirely alpha helix interrupted only by loops located at proline residues. Three sites in the protein sequence reveal two types of possible post-translation modification. A serine residue, at position 41, is a candidate for protein kinase C phosphorylation. Glycine residues at position 69 and 91 are probable sites for acetylation by covalent amide linkage of myristate via N-myristoyl transferase. Rtp is differentially expressed in the trout retina between parr and smolt developmental stages (smoltification). It is likely to be a house-keeping protein [].
Probab=20.24 E-value=1.4e+02 Score=24.56 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 015165 302 NNMRLREEQDAAYRAALEADQ 322 (412)
Q Consensus 302 ~~R~lreeQD~aY~~SL~~D~ 322 (412)
....||.-||.||+-+|+.-+
T Consensus 63 L~~~Ik~L~~~aYqLGl~EaK 83 (95)
T PF10044_consen 63 LIEKIKKLQDEAYQLGLEEAK 83 (95)
T ss_pred HHHHHHHHHHHHHHHhHHHHH
Confidence 345889999999999987554
No 263
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.00 E-value=80 Score=31.25 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=30.2
Q ss_pred HHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 9 AYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 9 ~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.=.+++||++. +.|..+|..++|++-.||-....+
T Consensus 235 ~i~~~~~~~~~-~~a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 235 RIVRQATDCNK-ELAEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHhCcCH-HHHHHHHHHhCCCcHHHHHHHHhC
Confidence 34789999887 899999999999999999877653
Done!