Query 015165
Match_columns 412
No_of_seqs 260 out of 638
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 07:49:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ec4_A FAS-associated factor 1 100.0 6.1E-37 2.1E-41 279.1 16.6 146 145-291 10-175 (178)
2 2dlx_A UBX domain-containing p 99.8 1.2E-18 4.1E-23 154.6 15.6 114 170-287 26-139 (153)
3 3e21_A HFAF1, FAS-associated f 99.4 1.6E-13 5.4E-18 95.8 5.2 43 1-43 2-44 (45)
4 1v92_A NSFL1 cofactor P47; 3-h 99.3 3.4E-12 1.2E-16 90.0 4.1 44 1-45 2-45 (46)
5 2dam_A ETEA protein; KIAA0887, 99.2 1.5E-11 5.3E-16 93.6 5.4 45 3-47 17-61 (67)
6 2dal_A Protein KIAA0794; FAS a 98.9 5.6E-10 1.9E-14 83.7 4.6 42 4-46 15-56 (62)
7 2dzl_A Protein FAM100B; UBA-li 98.9 8.2E-10 2.8E-14 83.7 5.1 45 1-46 12-58 (66)
8 2kuc_A Putative disulphide-iso 98.9 1.2E-08 4E-13 85.5 12.2 116 168-287 9-124 (130)
9 3f9u_A Putative exported cytoc 98.9 1.5E-08 5E-13 89.6 11.5 114 170-287 31-169 (172)
10 2ju5_A Thioredoxin disulfide i 98.8 2.6E-08 8.9E-13 87.0 12.2 113 165-284 28-152 (154)
11 2lst_A Thioredoxin; structural 98.3 5.7E-10 2E-14 93.8 0.0 116 169-287 4-119 (130)
12 3ph9_A Anterior gradient prote 98.7 1.5E-08 5.3E-13 89.1 7.6 114 168-289 27-150 (151)
13 3ira_A Conserved protein; meth 98.5 4.7E-07 1.6E-11 81.4 10.8 88 165-255 19-114 (173)
14 3fk8_A Disulphide isomerase; A 98.5 4.8E-07 1.6E-11 76.0 9.4 103 174-281 17-130 (133)
15 2fwh_A Thiol:disulfide interch 98.4 1.3E-06 4.6E-11 73.9 9.8 109 167-282 10-126 (134)
16 1ep7_A Thioredoxin CH1, H-type 98.0 4.2E-05 1.4E-09 61.5 10.8 100 173-283 11-110 (112)
17 1xfl_A Thioredoxin H1; AT3G510 97.9 7.5E-05 2.6E-09 62.2 11.0 96 173-282 25-122 (124)
18 2vm1_A Thioredoxin, thioredoxi 97.9 0.0001 3.5E-09 59.7 11.0 98 173-284 15-114 (118)
19 1thx_A Thioredoxin, thioredoxi 97.9 0.00012 4.2E-09 58.8 11.3 99 173-284 15-113 (115)
20 3tco_A Thioredoxin (TRXA-1); d 97.9 6.9E-05 2.4E-09 59.6 9.6 99 171-283 10-108 (109)
21 1ti3_A Thioredoxin H, PTTRXH1; 97.9 6.8E-05 2.3E-09 60.3 9.4 97 173-283 13-111 (113)
22 3gnj_A Thioredoxin domain prot 97.9 0.00018 6.1E-09 57.5 11.8 91 184-284 20-110 (111)
23 2vlu_A Thioredoxin, thioredoxi 97.8 0.00012 4E-09 60.0 10.5 99 173-283 21-119 (122)
24 2l57_A Uncharacterized protein 97.8 7.5E-05 2.6E-09 61.7 9.4 95 182-283 22-116 (126)
25 2voc_A Thioredoxin; electron t 97.8 0.00015 5.1E-09 58.8 10.9 97 171-282 7-103 (112)
26 3die_A Thioredoxin, TRX; elect 97.8 8.9E-05 3.1E-09 58.7 9.1 96 171-281 9-104 (106)
27 3d22_A TRXH4, thioredoxin H-ty 97.8 0.00012 4E-09 61.6 10.3 100 172-285 32-133 (139)
28 3dml_A Putative uncharacterize 97.8 3.9E-05 1.3E-09 64.4 6.9 98 185-288 17-114 (116)
29 2yzu_A Thioredoxin; redox prot 97.8 0.00013 4.4E-09 57.9 9.8 98 172-283 8-105 (109)
30 2i4a_A Thioredoxin; acidophIle 97.8 0.00016 5.3E-09 57.4 10.2 96 173-281 10-105 (107)
31 2e0q_A Thioredoxin; electron t 97.8 0.00025 8.4E-09 55.6 11.2 98 172-284 6-103 (104)
32 1w4v_A Thioredoxin, mitochondr 97.8 0.00022 7.5E-09 58.5 11.2 95 179-283 24-118 (119)
33 3ul3_B Thioredoxin, thioredoxi 97.8 3.8E-05 1.3E-09 64.0 6.3 115 154-280 12-126 (128)
34 3qou_A Protein YBBN; thioredox 97.7 0.00031 1.1E-08 66.6 13.3 103 171-285 13-115 (287)
35 3hxs_A Thioredoxin, TRXP; elec 97.7 0.00015 5.2E-09 61.0 9.8 90 185-284 50-139 (141)
36 3zzx_A Thioredoxin; oxidoreduc 97.7 0.00029 9.9E-09 57.4 11.0 90 174-279 10-101 (105)
37 3bq3_A Defective in cullin ned 97.7 1.7E-05 5.9E-10 75.9 4.1 42 3-45 14-55 (270)
38 2trx_A Thioredoxin; electron t 97.7 0.00028 9.7E-09 56.2 10.6 98 173-283 10-107 (108)
39 3qfa_C Thioredoxin; protein-pr 97.7 0.00022 7.5E-09 58.4 10.1 94 173-282 20-115 (116)
40 1nsw_A Thioredoxin, TRX; therm 97.7 0.00011 3.7E-09 58.3 8.0 91 181-281 12-102 (105)
41 3p2a_A Thioredoxin 2, putative 97.7 0.00025 8.7E-09 60.4 10.8 102 171-286 44-145 (148)
42 3d6i_A Monothiol glutaredoxin- 97.7 0.00045 1.5E-08 55.5 11.7 98 174-283 10-108 (112)
43 2ppt_A Thioredoxin-2; thiredox 97.7 0.00036 1.2E-08 60.6 11.7 91 184-284 62-152 (155)
44 1dby_A Chloroplast thioredoxin 97.7 0.00022 7.4E-09 56.8 9.4 92 181-282 14-105 (107)
45 3hz4_A Thioredoxin; NYSGXRC, P 97.7 0.00031 1E-08 59.5 10.6 97 179-285 17-113 (140)
46 2dml_A Protein disulfide-isome 97.7 0.00024 8.3E-09 58.8 9.8 102 172-285 24-125 (130)
47 2f51_A Thioredoxin; electron t 97.6 0.00037 1.3E-08 57.3 10.5 95 171-272 8-102 (118)
48 2o8v_B Thioredoxin 1; disulfid 97.6 0.00022 7.5E-09 59.7 9.2 100 171-283 28-127 (128)
49 3m9j_A Thioredoxin; oxidoreduc 97.6 0.00039 1.3E-08 55.0 10.2 95 174-282 10-104 (105)
50 1t00_A Thioredoxin, TRX; redox 97.6 0.00029 1E-08 56.6 9.6 91 183-283 20-110 (112)
51 1fb6_A Thioredoxin M; electron 97.6 0.0003 1E-08 55.5 9.4 96 174-282 9-104 (105)
52 1xwb_A Thioredoxin; dimerizati 97.6 0.00051 1.7E-08 54.2 10.5 95 174-281 10-104 (106)
53 1syr_A Thioredoxin; SGPP, stru 97.6 0.00043 1.5E-08 55.9 10.2 93 173-281 17-109 (112)
54 4euy_A Uncharacterized protein 97.6 0.0002 6.7E-09 57.3 7.8 86 184-282 16-103 (105)
55 1x5d_A Protein disulfide-isome 97.6 0.0005 1.7E-08 56.9 10.5 93 183-285 22-118 (133)
56 3aps_A DNAJ homolog subfamily 97.6 0.00064 2.2E-08 55.5 11.1 98 180-287 15-116 (122)
57 2j23_A Thioredoxin; immune pro 97.6 0.00043 1.5E-08 57.0 9.9 92 180-282 27-119 (121)
58 3f3q_A Thioredoxin-1; His TAG, 97.5 0.00061 2.1E-08 55.0 10.4 90 177-280 15-106 (109)
59 3uvt_A Thioredoxin domain-cont 97.5 0.0011 3.7E-08 52.8 11.8 95 169-281 9-109 (111)
60 1sen_A Thioredoxin-like protei 97.5 0.00025 8.7E-09 62.2 7.8 109 168-288 30-152 (164)
61 1kng_A Thiol:disulfide interch 97.5 0.00014 4.7E-09 61.8 5.8 98 178-285 34-153 (156)
62 1zma_A Bacterocin transport ac 97.5 0.00065 2.2E-08 55.4 9.7 100 168-279 12-116 (118)
63 1r26_A Thioredoxin; redox-acti 97.5 0.0009 3.1E-08 55.8 10.6 95 174-284 29-123 (125)
64 2i1u_A Thioredoxin, TRX, MPT46 97.5 0.0005 1.7E-08 55.9 8.9 91 181-281 25-115 (121)
65 2xc2_A Thioredoxinn; oxidoredu 97.4 0.0009 3.1E-08 54.3 10.1 93 173-281 22-115 (117)
66 2l5o_A Putative thioredoxin; s 97.4 0.00032 1.1E-08 59.4 7.3 97 183-286 25-143 (153)
67 2b5x_A YKUV protein, TRXY; thi 97.4 0.00061 2.1E-08 56.9 8.9 100 179-285 22-146 (148)
68 1gh2_A Thioredoxin-like protei 97.4 0.0014 4.7E-08 52.3 10.6 96 173-282 10-105 (107)
69 2vim_A Thioredoxin, TRX; thior 97.4 0.0014 4.8E-08 51.4 10.5 91 175-281 10-102 (104)
70 2dj1_A Protein disulfide-isome 97.4 0.0011 3.7E-08 55.4 10.4 99 171-284 23-124 (140)
71 2l5l_A Thioredoxin; structural 97.4 0.00089 3E-08 56.2 9.6 90 185-284 37-126 (136)
72 3apq_A DNAJ homolog subfamily 97.3 0.0012 4.1E-08 59.8 10.9 92 184-285 112-203 (210)
73 2f9s_A Thiol-disulfide oxidore 97.3 0.0008 2.7E-08 57.0 9.1 98 183-287 23-141 (151)
74 1zzo_A RV1677; thioredoxin fol 97.3 0.00077 2.6E-08 55.3 8.5 89 184-283 23-134 (136)
75 2oe3_A Thioredoxin-3; electron 97.3 0.0018 6.2E-08 52.8 10.5 90 176-279 20-111 (114)
76 1wmj_A Thioredoxin H-type; str 97.3 0.00012 4.1E-09 60.5 3.1 98 173-284 23-122 (130)
77 2cr5_A Reproduction 8; UBX dom 97.3 5.6E-05 1.9E-09 62.6 1.0 34 374-411 8-42 (109)
78 1v98_A Thioredoxin; oxidoreduc 97.3 0.0017 5.8E-08 54.6 10.4 99 172-284 40-138 (140)
79 3hcz_A Possible thiol-disulfid 97.3 0.00034 1.2E-08 58.6 5.8 95 182-283 27-145 (148)
80 1faa_A Thioredoxin F; electron 97.3 0.0022 7.7E-08 52.4 10.6 95 172-281 25-121 (124)
81 1lu4_A Soluble secreted antige 97.3 0.0009 3.1E-08 55.1 8.2 89 184-283 22-135 (136)
82 3kh7_A Thiol:disulfide interch 97.2 0.00026 9E-09 62.5 5.1 112 163-285 32-168 (176)
83 2b1k_A Thiol:disulfide interch 97.2 0.00068 2.3E-08 58.6 7.7 93 184-286 49-162 (168)
84 3raz_A Thioredoxin-related pro 97.2 0.002 6.8E-08 54.6 10.4 92 184-285 22-141 (151)
85 2wz9_A Glutaredoxin-3; protein 97.2 0.0022 7.7E-08 55.0 10.8 96 174-285 22-119 (153)
86 2l6c_A Thioredoxin; oxidoreduc 97.2 0.0025 8.7E-08 51.3 10.5 87 184-283 17-105 (110)
87 1oaz_A Thioredoxin 1; immune s 97.2 0.0004 1.4E-08 57.7 5.7 97 172-281 10-120 (123)
88 2pu9_C TRX-F, thioredoxin F-ty 97.2 0.0017 5.8E-08 52.0 8.9 96 172-282 12-109 (111)
89 3lor_A Thiol-disulfide isomera 97.2 0.0023 7.9E-08 54.4 10.2 99 178-286 22-157 (160)
90 3kcm_A Thioredoxin family prot 97.2 0.00045 1.5E-08 58.5 5.7 100 181-287 23-146 (154)
91 3gix_A Thioredoxin-like protei 97.2 0.0021 7.1E-08 55.4 10.0 91 184-284 21-121 (149)
92 3erw_A Sporulation thiol-disul 97.2 0.0011 3.6E-08 55.2 7.9 88 185-279 33-144 (145)
93 2lja_A Putative thiol-disulfid 97.2 0.002 6.8E-08 54.3 9.7 94 185-285 29-144 (152)
94 3gl3_A Putative thiol:disulfid 97.1 0.00086 3E-08 56.6 7.1 99 179-284 21-142 (152)
95 1mek_A Protein disulfide isome 97.1 0.00085 2.9E-08 54.0 6.5 101 170-282 12-115 (120)
96 3cxg_A Putative thioredoxin; m 97.1 0.0012 4.2E-08 55.4 7.6 98 174-283 30-128 (133)
97 3fkf_A Thiol-disulfide oxidore 97.1 0.0026 9.1E-08 53.0 9.5 89 185-283 32-145 (148)
98 3dxb_A Thioredoxin N-terminall 97.1 0.0019 6.4E-08 59.2 9.2 102 171-285 18-119 (222)
99 3emx_A Thioredoxin; structural 97.1 0.003 1E-07 53.0 9.7 87 188-285 33-127 (135)
100 4evm_A Thioredoxin family prot 97.1 0.0025 8.6E-08 51.9 9.0 91 184-281 20-136 (138)
101 3or5_A Thiol:disulfide interch 97.1 0.0009 3.1E-08 57.2 6.5 99 182-287 30-154 (165)
102 2yj7_A LPBCA thioredoxin; oxid 96.1 9.1E-05 3.1E-09 58.3 0.0 90 182-281 15-104 (106)
103 3q6o_A Sulfhydryl oxidase 1; p 97.0 0.0034 1.2E-07 58.1 10.6 108 172-287 19-130 (244)
104 1z96_A DNA-damage, UBA-domain 97.0 0.0008 2.7E-08 45.0 4.4 38 3-42 3-40 (40)
105 2qsi_A Putative hydrogenase ex 96.9 0.014 4.7E-07 50.2 12.7 110 159-283 11-122 (137)
106 2djj_A PDI, protein disulfide- 96.9 0.0027 9.2E-08 51.5 7.7 88 184-282 23-115 (121)
107 1wj7_A Hypothetical protein (R 96.9 0.00076 2.6E-08 55.0 4.1 41 4-45 39-79 (104)
108 2dj3_A Protein disulfide-isome 96.9 0.0019 6.5E-08 53.4 6.8 92 185-284 24-118 (133)
109 3h79_A Thioredoxin-like protei 96.9 0.0068 2.3E-07 49.9 10.1 100 171-281 21-125 (127)
110 3eyt_A Uncharacterized protein 96.9 0.0036 1.2E-07 53.2 8.6 95 181-285 23-153 (158)
111 2dbc_A PDCL2, unnamed protein 96.8 0.0032 1.1E-07 53.0 7.7 80 174-270 19-100 (135)
112 2ggt_A SCO1 protein homolog, m 96.8 0.014 4.6E-07 49.7 11.9 95 185-286 22-163 (164)
113 1qgv_A Spliceosomal protein U5 96.8 0.008 2.7E-07 51.2 10.1 93 185-284 22-121 (142)
114 1jfu_A Thiol:disulfide interch 96.7 0.007 2.4E-07 53.0 9.4 97 182-285 56-181 (186)
115 1a8l_A Protein disulfide oxido 96.7 0.019 6.4E-07 51.9 12.4 95 179-283 126-225 (226)
116 2dj0_A Thioredoxin-related tra 96.6 0.0032 1.1E-07 52.7 6.5 94 171-276 13-113 (137)
117 3lwa_A Secreted thiol-disulfid 96.6 0.014 4.8E-07 51.0 10.5 96 182-284 55-181 (183)
118 1nho_A Probable thioredoxin; b 96.6 0.0069 2.4E-07 45.6 7.4 81 189-283 4-84 (85)
119 3ewl_A Uncharacterized conserv 96.6 0.0026 8.8E-08 53.0 5.3 92 183-281 24-138 (142)
120 3ed3_A Protein disulfide-isome 96.6 0.0079 2.7E-07 57.9 9.5 104 174-283 26-141 (298)
121 2rli_A SCO2 protein homolog, m 96.5 0.037 1.3E-06 47.4 12.8 95 185-286 25-166 (171)
122 3ia1_A THIO-disulfide isomeras 96.5 0.0098 3.4E-07 50.1 8.8 88 187-284 31-144 (154)
123 3hdc_A Thioredoxin family prot 96.5 0.0036 1.2E-07 53.5 6.0 91 183-280 38-148 (158)
124 3ha9_A Uncharacterized thiored 96.5 0.022 7.6E-07 48.6 10.9 88 184-283 35-163 (165)
125 3fw2_A Thiol-disulfide oxidore 96.5 0.025 8.6E-07 47.6 11.1 90 185-284 32-148 (150)
126 3t58_A Sulfhydryl oxidase 1; o 96.5 0.016 5.6E-07 60.3 11.7 109 172-287 19-130 (519)
127 2lrn_A Thiol:disulfide interch 96.4 0.021 7.3E-07 48.1 10.5 90 185-284 28-141 (152)
128 3idv_A Protein disulfide-isome 96.4 0.02 6.9E-07 52.0 10.9 100 171-285 21-123 (241)
129 4gew_A 5'-tyrosyl-DNA phosphod 96.4 0.0018 6.3E-08 64.2 3.9 41 4-45 45-85 (362)
130 2qgv_A Hydrogenase-1 operon pr 96.3 0.035 1.2E-06 47.7 11.0 108 156-283 11-124 (140)
131 1fo5_A Thioredoxin; disulfide 96.3 0.011 3.8E-07 44.4 7.1 82 187-282 3-84 (85)
132 2lrt_A Uncharacterized protein 96.3 0.02 6.8E-07 48.7 9.5 89 185-280 34-144 (152)
133 2dah_A Ubiquilin-3; UBA domain 96.2 0.0052 1.8E-07 44.3 4.2 42 4-46 9-50 (54)
134 2h30_A Thioredoxin, peptide me 96.2 0.0081 2.8E-07 51.1 6.3 97 182-284 34-156 (164)
135 1x5e_A Thioredoxin domain cont 96.1 0.017 5.7E-07 47.2 8.0 96 171-283 13-109 (126)
136 1oai_A Nuclear RNA export fact 96.1 0.0059 2E-07 44.8 4.4 40 3-43 6-45 (59)
137 2bwb_A Ubiquitin-like protein 96.1 0.0084 2.9E-07 41.7 4.8 40 4-44 7-46 (46)
138 1wji_A Tudor domain containing 96.0 0.0084 2.9E-07 44.5 4.7 42 4-47 9-50 (63)
139 1vej_A Riken cDNA 4931431F19; 95.9 0.014 4.9E-07 44.7 6.0 42 4-46 29-70 (74)
140 2av4_A Thioredoxin-like protei 95.9 0.037 1.3E-06 48.6 9.4 100 174-283 31-138 (160)
141 1vdl_A Ubiquitin carboxyl-term 95.9 0.025 8.4E-07 42.9 6.9 44 5-48 25-68 (80)
142 2b5e_A Protein disulfide-isome 95.9 0.033 1.1E-06 57.1 10.6 102 170-283 19-121 (504)
143 2r2j_A Thioredoxin domain-cont 95.9 0.041 1.4E-06 54.4 10.9 101 171-285 11-118 (382)
144 2hyx_A Protein DIPZ; thioredox 95.9 0.027 9.2E-07 55.7 9.4 95 185-286 81-201 (352)
145 3f8u_A Protein disulfide-isome 95.8 0.016 5.5E-07 58.9 7.8 102 172-284 8-109 (481)
146 3idv_A Protein disulfide-isome 95.8 0.081 2.8E-06 47.9 11.6 98 171-283 136-236 (241)
147 1wou_A Thioredoxin -related pr 95.7 0.026 8.7E-07 46.3 7.4 64 185-254 23-101 (123)
148 3eur_A Uncharacterized protein 95.7 0.021 7.3E-07 47.6 6.8 80 185-268 30-132 (142)
149 2es7_A Q8ZP25_salty, putative 95.6 0.035 1.2E-06 47.4 8.0 98 171-285 23-126 (142)
150 2knz_A Ubiquilin-4; cytoplasm, 95.6 0.015 5.1E-07 41.6 4.6 41 4-45 11-51 (53)
151 1vg5_A RSGI RUH-014, rhomboid 95.6 0.012 4E-07 45.1 4.3 42 4-47 29-70 (73)
152 2jy5_A Ubiquilin-1; UBA, alter 95.6 0.018 6.2E-07 41.0 5.0 40 4-44 12-51 (52)
153 3iv4_A Putative oxidoreductase 95.6 0.082 2.8E-06 43.7 9.8 90 179-278 17-110 (112)
154 1wr1_B Ubiquitin-like protein 95.6 0.016 5.3E-07 42.4 4.6 40 4-44 17-56 (58)
155 1ify_A HHR23A, UV excision rep 95.4 0.011 3.9E-07 41.5 3.5 39 4-44 8-46 (49)
156 1o73_A Tryparedoxin; electron 95.3 0.017 5.9E-07 48.0 4.9 71 180-253 22-116 (144)
157 2jp7_A MRNA export factor MEX6 95.3 0.018 6E-07 41.9 4.0 40 4-44 6-45 (57)
158 2l2d_A OTU domain-containing p 95.2 0.024 8.1E-07 41.7 4.6 38 3-41 16-53 (73)
159 2trc_P Phosducin, MEKA, PP33; 95.2 0.073 2.5E-06 48.8 9.2 83 174-271 109-193 (217)
160 2g3q_A Protein YBL047C; endocy 95.2 0.019 6.5E-07 39.0 3.9 39 4-44 4-42 (43)
161 2ywm_A Glutaredoxin-like prote 95.2 0.18 6.2E-06 45.5 11.7 113 153-285 107-221 (229)
162 1a0r_P Phosducin, MEKA, PP33; 95.2 0.056 1.9E-06 50.7 8.4 82 174-270 122-205 (245)
163 1o8x_A Tryparedoxin, TRYX, TXN 95.1 0.066 2.3E-06 44.7 8.1 69 182-253 24-116 (146)
164 1i5g_A Tryparedoxin II; electr 95.1 0.071 2.4E-06 44.3 8.1 71 182-255 24-119 (144)
165 3us3_A Calsequestrin-1; calciu 95.1 0.11 3.9E-06 51.0 10.8 102 170-284 18-124 (367)
166 4fo5_A Thioredoxin-like protei 95.1 0.01 3.6E-07 49.6 2.8 82 185-279 31-140 (143)
167 2ywi_A Hypothetical conserved 95.1 0.044 1.5E-06 48.1 7.0 91 185-285 44-175 (196)
168 3evi_A Phosducin-like protein 95.0 0.053 1.8E-06 44.9 6.8 82 172-270 10-93 (118)
169 3f8u_A Protein disulfide-isome 94.9 0.06 2.1E-06 54.6 8.4 99 173-283 360-460 (481)
170 1a8l_A Protein disulfide oxido 94.9 0.35 1.2E-05 43.3 12.6 92 184-283 20-112 (226)
171 1ilo_A Conserved hypothetical 94.8 0.15 5.1E-06 37.4 8.4 73 189-278 2-75 (77)
172 3s9f_A Tryparedoxin; thioredox 94.8 0.081 2.8E-06 45.7 7.8 70 183-255 45-138 (165)
173 1xvw_A Hypothetical protein RV 94.8 0.075 2.6E-06 45.0 7.5 78 185-272 34-144 (160)
174 2bmx_A Alkyl hydroperoxidase C 94.8 0.16 5.5E-06 44.9 10.0 92 185-283 44-169 (195)
175 3uem_A Protein disulfide-isome 94.7 0.09 3.1E-06 51.1 8.8 95 173-280 257-353 (361)
176 3kp8_A Vkorc1/thioredoxin doma 94.7 0.037 1.3E-06 44.7 5.1 86 177-279 3-90 (106)
177 1zof_A Alkyl hydroperoxide-red 94.6 0.12 4.2E-06 45.7 8.8 90 185-281 32-158 (198)
178 1we0_A Alkyl hydroperoxide red 94.6 0.16 5.6E-06 44.4 9.4 92 185-283 30-156 (187)
179 1sji_A Calsequestrin 2, calseq 94.5 0.17 5.6E-06 49.3 10.2 89 184-283 26-121 (350)
180 3drn_A Peroxiredoxin, bacterio 94.5 0.16 5.4E-06 43.3 8.8 92 185-283 27-144 (161)
181 3cmi_A Peroxiredoxin HYR1; thi 94.3 0.14 4.9E-06 44.0 8.2 92 185-284 31-168 (171)
182 2cvb_A Probable thiol-disulfid 94.2 0.075 2.6E-06 46.5 6.3 91 185-285 32-160 (188)
183 2cwb_A Chimera of immunoglobul 94.2 0.048 1.6E-06 44.8 4.6 42 4-46 66-107 (108)
184 3ga4_A Dolichyl-diphosphooligo 94.0 0.28 9.6E-06 43.7 9.6 108 169-283 22-152 (178)
185 2k6v_A Putative cytochrome C o 93.9 0.17 5.9E-06 43.0 7.9 86 185-281 34-170 (172)
186 2h01_A 2-Cys peroxiredoxin; th 93.8 0.26 9E-06 43.3 9.2 91 185-281 30-156 (192)
187 3apo_A DNAJ homolog subfamily 93.8 0.21 7.3E-06 53.9 10.1 103 174-286 663-769 (780)
188 2c0g_A ERP29 homolog, windbeut 93.8 0.36 1.2E-05 45.2 10.4 98 171-283 22-131 (248)
189 2qc7_A ERP31, ERP28, endoplasm 93.7 0.25 8.5E-06 46.1 9.2 98 171-282 11-117 (240)
190 2vup_A Glutathione peroxidase- 93.7 0.32 1.1E-05 42.7 9.4 94 185-285 47-186 (190)
191 1veg_A NEDD8 ultimate buster-1 93.7 0.052 1.8E-06 42.5 3.6 41 4-46 29-69 (83)
192 2cp8_A NEXT to BRCA1 gene 1 pr 93.4 0.1 3.5E-06 37.4 4.4 43 4-47 9-51 (54)
193 1zye_A Thioredoxin-dependent p 93.3 0.41 1.4E-05 43.4 9.8 92 185-283 55-184 (220)
194 1dv0_A DNA repair protein HHR2 93.0 0.064 2.2E-06 37.3 2.8 41 3-45 3-43 (47)
195 3apo_A DNAJ homolog subfamily 92.9 0.15 5E-06 55.2 7.1 96 174-283 125-220 (780)
196 1uul_A Tryparedoxin peroxidase 92.9 0.32 1.1E-05 43.2 8.3 91 185-282 35-163 (202)
197 2v1m_A Glutathione peroxidase; 92.8 0.76 2.6E-05 38.7 10.2 38 243-284 130-167 (169)
198 2p5q_A Glutathione peroxidase 92.8 0.39 1.3E-05 40.6 8.3 92 185-283 31-167 (170)
199 2i81_A 2-Cys peroxiredoxin; st 92.8 0.45 1.5E-05 43.0 9.2 92 185-282 51-178 (213)
200 1wiv_A UBP14, ubiquitin-specif 92.7 0.13 4.4E-06 39.2 4.5 41 4-46 29-69 (73)
201 2hls_A Protein disulfide oxido 92.7 0.78 2.7E-05 42.3 10.9 117 151-285 107-227 (243)
202 2djk_A PDI, protein disulfide- 92.7 0.86 2.9E-05 37.6 10.1 91 184-284 21-115 (133)
203 2b7k_A SCO1 protein; metalloch 92.6 0.82 2.8E-05 40.5 10.6 95 185-286 40-181 (200)
204 2ls5_A Uncharacterized protein 91.8 0.022 7.4E-07 48.4 0.0 85 179-268 26-133 (159)
205 3qcp_A QSOX from trypanosoma b 92.5 0.62 2.1E-05 47.8 10.7 107 173-286 31-154 (470)
206 1qmv_A Human thioredoxin perox 92.4 0.42 1.4E-05 42.2 8.3 90 185-281 33-160 (197)
207 2dkl_A Trinucleotide repeat co 92.3 0.15 5.3E-06 40.0 4.5 40 4-45 21-60 (85)
208 2ywm_A Glutaredoxin-like prote 92.2 0.64 2.2E-05 41.7 9.5 99 175-283 7-114 (229)
209 2dak_A Ubiquitin carboxyl-term 92.1 0.12 4E-06 38.2 3.5 39 4-44 9-47 (63)
210 2lva_A Ubiquitin carboxyl-term 91.2 0.029 9.9E-07 46.7 0.0 43 5-47 19-61 (129)
211 3dwv_A Glutathione peroxidase- 91.8 0.59 2E-05 40.9 8.5 90 185-284 45-183 (187)
212 3u5r_E Uncharacterized protein 91.8 0.094 3.2E-06 47.6 3.3 91 185-285 57-188 (218)
213 2b5e_A Protein disulfide-isome 91.5 0.33 1.1E-05 49.5 7.4 99 173-284 366-467 (504)
214 4f9z_D Endoplasmic reticulum r 91.5 2.7 9.1E-05 37.9 12.9 111 167-283 112-224 (227)
215 1wj4_A KIAA0794 protein; UBX d 91.4 0.09 3.1E-06 44.2 2.5 23 385-411 40-62 (124)
216 3kij_A Probable glutathione pe 91.4 1.2 4.1E-05 38.5 10.0 94 185-285 37-171 (180)
217 3uem_A Protein disulfide-isome 90.7 1.2 4.2E-05 42.9 10.3 107 169-284 121-230 (361)
218 2cpw_A CBL-interacting protein 90.5 0.28 9.4E-06 36.3 4.1 40 5-46 20-60 (64)
219 3qx1_A FAS-associated factor 1 90.3 0.11 3.8E-06 40.3 1.9 20 385-407 4-23 (84)
220 3ztl_A Thioredoxin peroxidase; 89.3 0.84 2.9E-05 41.3 7.4 77 185-271 68-181 (222)
221 1wgl_A TOLL-interacting protei 89.3 0.58 2E-05 34.0 5.0 44 4-47 9-52 (59)
222 2dna_A Unnamed protein product 89.3 0.77 2.6E-05 34.3 5.7 42 4-46 19-60 (67)
223 2dai_A Ubadc1, ubiquitin assoc 89.3 0.32 1.1E-05 37.9 3.7 40 4-45 29-68 (83)
224 2lus_A Thioredoxion; CR-Trp16, 88.7 0.074 2.5E-06 43.8 0.0 68 185-255 24-118 (143)
225 2obi_A PHGPX, GPX-4, phospholi 88.9 0.49 1.7E-05 41.1 5.2 32 245-280 149-180 (183)
226 3gkn_A Bacterioferritin comigr 88.8 1.4 4.7E-05 37.1 8.0 74 186-269 35-144 (163)
227 2p31_A CL683, glutathione pero 88.7 0.85 2.9E-05 39.5 6.7 90 185-281 48-178 (181)
228 1z6n_A Hypothetical protein PA 88.5 1.7 5.8E-05 37.9 8.4 70 185-266 53-127 (167)
229 1eej_A Thiol:disulfide interch 87.5 1.8 6E-05 39.0 8.2 84 185-283 85-210 (216)
230 2jsy_A Probable thiol peroxida 87.4 1.2 3.9E-05 37.8 6.6 89 185-283 43-166 (167)
231 3a2v_A Probable peroxiredoxin; 87.0 1.7 6E-05 40.5 8.1 88 185-282 32-160 (249)
232 2ekk_A UBA domain from E3 ubiq 87.0 0.69 2.4E-05 31.7 4.0 37 4-43 9-45 (47)
233 2gs3_A PHGPX, GPX-4, phospholi 86.6 1.8 6.2E-05 37.5 7.5 32 246-281 152-183 (185)
234 2cp9_A EF-TS, EF-TSMT, elongat 86.6 0.61 2.1E-05 34.5 3.6 36 5-41 10-45 (64)
235 1s3s_G P47 protein; AAA ATPase 86.2 0.34 1.2E-05 40.7 2.4 23 385-411 49-71 (127)
236 1whc_A RSGI RUH-027, UBA/UBX 3 86.1 0.42 1.4E-05 35.3 2.6 40 4-45 9-49 (64)
237 2f8a_A Glutathione peroxidase 86.0 4.1 0.00014 36.4 9.8 34 246-283 173-206 (208)
238 3keb_A Probable thiol peroxida 85.4 3 0.0001 38.3 8.7 46 236-283 118-175 (224)
239 2dag_A Ubiquitin carboxyl-term 85.2 0.7 2.4E-05 35.1 3.5 40 4-45 9-49 (74)
240 1xzo_A BSSCO, hypothetical pro 85.1 5.5 0.00019 33.4 9.7 38 242-283 132-171 (174)
241 2c0d_A Thioredoxin peroxidase 84.6 7.3 0.00025 35.2 10.9 92 185-282 55-182 (221)
242 2a4v_A Peroxiredoxin DOT5; yea 84.4 7.4 0.00025 32.4 10.2 44 236-284 102-154 (159)
243 1xvq_A Thiol peroxidase; thior 84.0 4.8 0.00016 34.5 8.9 85 186-280 44-164 (175)
244 1n8j_A AHPC, alkyl hydroperoxi 83.5 8 0.00027 33.5 10.3 42 237-282 103-154 (186)
245 1otr_A Protein CUE2; protein-p 82.7 1.8 6E-05 30.3 4.4 42 3-44 3-44 (49)
246 2e7p_A Glutaredoxin; thioredox 82.7 2.3 7.7E-05 33.6 5.9 66 178-253 12-80 (116)
247 2pn8_A Peroxiredoxin-4; thiore 82.5 5.6 0.00019 35.5 9.1 88 185-282 47-175 (211)
248 4gqc_A Thiol peroxidase, perox 82.5 2.4 8.4E-05 36.3 6.4 95 184-284 31-160 (164)
249 2r37_A Glutathione peroxidase 81.9 17 0.00057 32.4 12.1 36 247-286 160-195 (207)
250 1vek_A UBP14, ubiquitin-specif 81.2 1.5 5.1E-05 34.1 4.0 40 4-45 29-69 (84)
251 3ixr_A Bacterioferritin comigr 80.3 5.7 0.00019 34.2 8.1 31 246-280 141-174 (179)
252 4g2e_A Peroxiredoxin; redox pr 78.5 6.2 0.00021 33.2 7.6 48 185-234 29-77 (157)
253 3gyk_A 27KDA outer membrane pr 78.5 13 0.00043 31.5 9.6 39 236-284 135-173 (175)
254 2i3y_A Epididymal secretory gl 78.0 12 0.00042 33.6 9.8 34 247-284 178-211 (215)
255 3qpm_A Peroxiredoxin; oxidored 77.6 12 0.00041 34.2 9.7 41 236-280 152-202 (240)
256 2dhy_A CUE domain-containing p 77.5 2.8 9.5E-05 31.2 4.3 43 3-45 17-59 (67)
257 3tjj_A Peroxiredoxin-4; thiore 77.3 10 0.00035 35.1 9.3 90 185-280 90-216 (254)
258 3me7_A Putative uncharacterize 76.3 17 0.00056 30.9 9.8 47 233-283 105-161 (170)
259 2lbc_A Ubiquitin carboxyl-term 76.2 2.6 8.8E-05 35.1 4.3 41 4-46 78-118 (126)
260 1wjk_A C330018D20RIK protein; 75.9 6.8 0.00023 30.6 6.5 77 187-280 16-92 (100)
261 3sbc_A Peroxiredoxin TSA1; alp 75.4 13 0.00044 33.9 9.1 49 185-235 51-100 (216)
262 1t3b_A Thiol:disulfide interch 71.6 6.1 0.00021 35.3 6.0 81 185-280 85-207 (211)
263 2ooa_A E3 ubiquitin-protein li 71.3 5.2 0.00018 28.2 4.1 34 5-40 12-45 (52)
264 2v2g_A Peroxiredoxin 6; oxidor 68.3 5.2 0.00018 36.7 4.8 41 187-233 30-75 (233)
265 2crn_A Ubash3A protein; compac 68.0 4.2 0.00014 29.8 3.3 41 4-46 9-50 (64)
266 3p7x_A Probable thiol peroxida 67.9 13 0.00043 31.3 6.9 41 236-280 113-164 (166)
267 2k8s_A Thioredoxin; dimer, str 67.9 4.8 0.00016 29.7 3.7 55 190-251 4-61 (80)
268 1v58_A Thiol:disulfide interch 67.9 14 0.00047 33.7 7.6 46 235-285 189-234 (241)
269 3bj5_A Protein disulfide-isome 66.4 38 0.0013 28.3 9.7 93 185-283 31-126 (147)
270 1nm3_A Protein HI0572; hybrid, 64.3 26 0.00088 31.4 8.7 43 185-233 32-81 (241)
271 3kp9_A Vkorc1/thioredoxin doma 63.3 12 0.00042 35.6 6.4 89 172-279 185-275 (291)
272 2d9s_A CBL E3 ubiquitin protei 62.6 10 0.00035 26.8 4.2 37 4-42 9-45 (53)
273 4eo3_A Bacterioferritin comigr 61.5 25 0.00087 33.6 8.4 89 185-285 23-140 (322)
274 1aip_C EF-TS, elongation facto 61.4 10 0.00035 34.1 5.1 37 4-41 3-39 (196)
275 1hyu_A AHPF, alkyl hydroperoxi 61.3 49 0.0017 33.5 11.1 83 185-282 116-198 (521)
276 3tue_A Tryparedoxin peroxidase 61.1 45 0.0015 30.3 9.6 49 185-235 55-104 (219)
277 3oja_B Anopheles plasmodium-re 59.5 1.6E+02 0.0053 30.0 16.3 6 377-382 580-585 (597)
278 2hls_A Protein disulfide oxido 57.8 67 0.0023 28.9 10.3 100 171-283 9-116 (243)
279 1q98_A Thiol peroxidase, TPX; 56.9 20 0.00068 30.0 6.1 17 186-202 43-60 (165)
280 2yzh_A Probable thiol peroxida 56.0 24 0.00082 29.6 6.5 32 246-281 133-169 (171)
281 2q2f_A Selenoprotein S; anti-p 54.6 48 0.0016 25.6 7.1 16 282-297 33-48 (89)
282 1xb2_B EF-TS, elongation facto 53.8 14 0.00048 35.3 4.9 38 5-43 5-42 (291)
283 1xcc_A 1-Cys peroxiredoxin; un 53.7 18 0.00061 32.5 5.6 32 245-280 127-162 (220)
284 1tr8_A Conserved protein (MTH1 52.7 14 0.00049 29.6 4.1 35 5-40 66-100 (102)
285 1ttz_A Conserved hypothetical 52.6 23 0.0008 26.9 5.3 72 190-281 3-74 (87)
286 1prx_A HORF6; peroxiredoxin, h 52.5 78 0.0027 28.2 9.7 32 245-280 130-165 (224)
287 1psq_A Probable thiol peroxida 50.4 28 0.00097 28.9 6.0 41 236-280 110-161 (163)
288 2i1j_A Moesin; FERM, coiled-co 48.6 16 0.00056 38.1 5.0 8 303-310 341-348 (575)
289 1tp9_A Peroxiredoxin, PRX D (t 47.4 27 0.00093 29.2 5.4 17 186-202 35-52 (162)
290 3zrd_A Thiol peroxidase; oxido 47.1 37 0.0013 29.7 6.4 43 185-233 77-122 (200)
291 2fgx_A Putative thioredoxin; N 46.8 44 0.0015 26.6 6.3 76 188-279 30-106 (107)
292 2qho_B E3 ubiquitin-protein li 46.5 45 0.0016 23.0 5.2 41 4-44 9-49 (53)
293 1oqy_A HHR23A, UV excision rep 46.3 17 0.00058 35.8 4.4 39 4-44 168-206 (368)
294 3vkg_A Dynein heavy chain, cyt 45.1 2.9E+02 0.0099 35.0 15.5 20 175-194 1692-1711(3245)
295 2wfc_A Peroxiredoxin 5, PRDX5; 45.0 41 0.0014 28.5 6.3 19 185-203 30-49 (167)
296 3h93_A Thiol:disulfide interch 44.6 72 0.0025 27.1 7.9 43 236-285 143-185 (192)
297 4hde_A SCO1/SENC family lipopr 44.1 1.4E+02 0.0048 24.9 11.3 37 243-283 131-169 (170)
298 2cq9_A GLRX2 protein, glutared 43.4 1E+02 0.0034 24.8 8.2 69 173-250 14-85 (130)
299 4ae4_A Ubiquitin-associated pr 42.4 24 0.00082 29.0 4.0 37 6-44 78-114 (118)
300 1ego_A Glutaredoxin; electron 42.4 31 0.001 24.9 4.4 55 190-250 3-63 (85)
301 1sji_A Calsequestrin 2, calseq 40.5 1.9E+02 0.0064 27.2 10.9 107 169-283 230-345 (350)
302 1p3q_Q VPS9P, vacuolar protein 40.3 16 0.00056 25.9 2.3 40 3-42 11-50 (54)
303 2di0_A Activating signal coint 39.6 63 0.0021 24.1 5.5 43 4-46 13-55 (71)
304 1wgn_A UBAP1, ubiquitin associ 39.3 22 0.00075 25.9 2.9 42 4-47 19-60 (63)
305 3kzq_A Putative uncharacterize 38.1 75 0.0026 27.6 7.1 46 236-286 160-205 (208)
306 3q6o_A Sulfhydryl oxidase 1; p 35.0 1.3E+02 0.0044 26.6 8.3 94 151-255 117-215 (244)
307 1h75_A Glutaredoxin-like prote 34.3 54 0.0018 23.4 4.6 50 190-249 3-54 (81)
308 3kht_A Response regulator; PSI 33.0 1.1E+02 0.0037 24.0 6.8 21 268-288 110-131 (144)
309 2lqo_A Putative glutaredoxin R 32.8 1.6E+02 0.0056 22.4 7.6 72 190-282 7-82 (92)
310 3ipz_A Monothiol glutaredoxin- 32.5 1.7E+02 0.0059 22.6 7.8 69 175-254 7-81 (109)
311 1qkk_A DCTD, C4-dicarboxylate 31.3 1.2E+02 0.0042 24.0 6.9 18 268-285 104-121 (155)
312 2wem_A Glutaredoxin-related pr 30.8 1.4E+02 0.0047 23.9 6.9 70 173-250 7-81 (118)
313 3c1r_A Glutaredoxin-1; oxidize 29.9 75 0.0026 25.2 5.2 72 170-253 9-89 (118)
314 3cg4_A Response regulator rece 29.4 1.9E+02 0.0066 22.2 7.7 22 266-287 108-129 (142)
315 1kte_A Thioltransferase; redox 29.1 1.3E+02 0.0043 22.6 6.2 51 190-250 14-73 (105)
316 3kts_A Glycerol uptake operon 29.0 34 0.0012 30.5 3.1 74 172-254 40-113 (192)
317 3uma_A Hypothetical peroxiredo 28.6 77 0.0026 27.4 5.4 42 186-233 56-104 (184)
318 3rhb_A ATGRXC5, glutaredoxin-C 28.5 2E+02 0.0068 22.0 7.5 65 174-250 7-78 (113)
319 2ht9_A Glutaredoxin-2; thiored 27.8 1.5E+02 0.0051 24.6 6.9 68 174-250 37-107 (146)
320 3mq9_A Bone marrow stromal ant 27.1 4.5E+02 0.015 25.7 16.3 54 266-323 365-418 (471)
321 3mng_A Peroxiredoxin-5, mitoch 26.9 71 0.0024 27.3 4.8 9 245-253 137-145 (173)
322 2q2f_A Selenoprotein S; anti-p 26.5 2.2E+02 0.0076 21.9 8.8 12 315-326 46-57 (89)
323 2zay_A Response regulator rece 26.1 1.7E+02 0.0059 22.7 6.9 20 268-287 111-130 (147)
324 4f82_A Thioredoxin reductase; 26.0 1.5E+02 0.0052 25.6 6.8 15 220-234 81-96 (176)
325 2in3_A Hypothetical protein; D 25.7 1.6E+02 0.0056 25.2 7.1 47 235-286 166-212 (216)
326 3oja_B Anopheles plasmodium-re 25.6 5.2E+02 0.018 25.9 15.5 9 384-392 583-591 (597)
327 3gv1_A Disulfide interchange p 25.3 89 0.003 26.0 5.0 86 187-283 41-138 (147)
328 3us3_A Calsequestrin-1; calciu 24.4 4.3E+02 0.015 24.9 10.5 94 187-285 248-349 (367)
329 2klx_A Glutaredoxin; thioredox 24.3 2E+02 0.0068 20.8 6.4 51 190-250 8-60 (89)
330 1fov_A Glutaredoxin 3, GRX3; a 24.3 1.7E+02 0.0057 20.5 5.8 48 191-250 4-56 (82)
331 2pwj_A Mitochondrial peroxired 24.0 1.8E+02 0.0061 24.3 6.8 59 187-247 45-107 (171)
332 3grc_A Sensor protein, kinase; 23.1 2E+02 0.0068 22.1 6.6 20 268-287 110-129 (140)
333 3cnb_A DNA-binding response re 22.8 2.1E+02 0.0071 21.9 6.7 20 268-287 113-132 (143)
334 2lnd_A De novo designed protei 22.8 38 0.0013 26.0 1.9 31 174-204 39-69 (112)
335 1v95_A Nuclear receptor coacti 22.0 42 0.0014 28.1 2.1 76 212-288 25-110 (130)
336 3gx8_A Monothiol glutaredoxin- 21.9 3E+02 0.01 21.8 8.0 67 176-250 6-79 (121)
337 3nhm_A Response regulator; pro 21.3 2.7E+02 0.0092 21.0 7.1 67 221-287 49-124 (133)
338 1k66_A Phytochrome response re 21.0 2.6E+02 0.009 21.4 6.9 18 269-286 122-139 (149)
339 3q8g_A CRAL-TRIO domain-contai 20.9 92 0.0032 29.5 4.7 39 3-41 38-82 (320)
340 1y0n_A Hypothetical UPF0270 pr 20.5 1.3E+02 0.0043 22.9 4.3 55 151-209 14-71 (78)
341 1aua_A Phosphatidylinositol tr 20.4 97 0.0033 28.6 4.7 39 3-41 29-73 (296)
342 3dwa_A SUBB, subtilase cytotox 20.4 1.6E+02 0.0056 24.1 5.3 43 171-224 53-98 (126)
No 1
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=6.1e-37 Score=279.12 Aligned_cols=146 Identities=23% Similarity=0.475 Sum_probs=138.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCCCCccCCHHHHHHHH----HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc
Q 015165 145 VSAAALEAMEFVAVFERDYGNVKPNFVSEGFMDALQRS----RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE 220 (412)
Q Consensus 145 ~~~~~~~~~~F~~~f~~~yg~~~p~F~~gs~~eAl~~A----k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~ 220 (412)
+.||.+++.+|+++|+++||..||.||.|+|++|++.| |++.|||+||||+++|++|+.||++||||++|++||++
T Consensus 10 ~~dp~~~~~~F~~~f~~~yg~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~ 89 (178)
T 2ec4_A 10 AENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ 89 (178)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc
Confidence 45677889999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred CeEEEecccCChh-------------HHHHHhh---CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 221 NFVSWGGSIRASE-------------GFKMSNS---LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 221 nfV~w~~dv~~~E-------------g~~va~~---l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|||+|+||++++| |+++++. |++++||++++|+++ +++|+++++++|.+++++|++.|+.+++
T Consensus 90 nfV~w~~dv~~~e~~~~~~~~~~~~~g~~~a~~~~~~~~~~~P~l~ii~~~-~~~~~vl~~~~G~~~~~~ll~~L~~~~e 168 (178)
T 2ec4_A 90 NFITWAWDLTKDSNRARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGK-RSSNEVLNVIQGNTTVDELMMRLMAAME 168 (178)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHHHHTCHHHHHHHHHSCSTTCSEEEEECCC-SSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCCchhhhhhhhhhhhhhHHHHHHHHhhcCCCCCCeEEEEEcC-CCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 9999999999999 7788866 899999999999986 5579999999999999999999999999
Q ss_pred hhhHHHH
Q 015165 285 ESNPALL 291 (412)
Q Consensus 285 ~~~~~L~ 291 (412)
+|+++|.
T Consensus 169 ~~~~~l~ 175 (178)
T 2ec4_A 169 IFTAQQQ 175 (178)
T ss_dssp HHHHHSC
T ss_pred HhhHhhh
Confidence 9998764
No 2
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.79 E-value=1.2e-18 Score=154.60 Aligned_cols=114 Identities=15% Similarity=0.252 Sum_probs=105.1
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
.|.++|++|++.|++++||+|||+|+++|..|+.|+++||+|++|.++|++|||+|.+|++++++..+++.|++..+|++
T Consensus 26 ~~~~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~~~~~~l~~~y~v~~~P~~ 105 (153)
T 2dlx_A 26 MHKGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSEEGQRYIQFYKLGDFPYV 105 (153)
T ss_dssp SCCSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSHHHHHHHHHHTCCSSSEE
T ss_pred hcccCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCCHhHHHHHHHcCCCCCCEE
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++|++.++..+.. +.| +++++|+..|..+++.|.
T Consensus 106 ~fld~~~G~~l~~---~~g-~~~~~fl~~L~~~l~~~~ 139 (153)
T 2dlx_A 106 SILDPRTGQKLVE---WHQ-LDVSSFLDQVTGFLGEHG 139 (153)
T ss_dssp EEECTTTCCCCEE---ESS-CCHHHHHHHHHHHHHHTC
T ss_pred EEEeCCCCcEeee---cCC-CCHHHHHHHHHHHHHhcC
Confidence 9999865544544 446 899999999999998874
No 3
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=99.42 E-value=1.6e-13 Score=95.83 Aligned_cols=43 Identities=37% Similarity=0.530 Sum_probs=38.7
Q ss_pred CccHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 1 m~~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
|.+++++|+||++|||++|.+.|++||++|||||+.||+.||.
T Consensus 2 ~~d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 2 SMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cccHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 3579999999999999999999999999999999999999985
No 4
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=99.25 E-value=3.4e-12 Score=90.00 Aligned_cols=44 Identities=34% Similarity=0.554 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 1 MVDVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 1 m~~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
|++++++|.+|++|||++ .+.|+++|++++|||+.||+.||+++
T Consensus 2 M~~~~~~i~~F~~iTg~~-~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 2 AEERQDALREFVAVTGAE-EDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp TTHHHHHHHHHHHHTCCC-HHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHhCcC-HHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 788999999999999985 58999999999999999999999864
No 5
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.5e-11 Score=93.57 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=41.2
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
+++++|.||++|||+.+.+.|++||++|+||||.||..||+...+
T Consensus 17 ~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 17 EQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 478899999999998888999999999999999999999997653
No 6
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=5.6e-10 Score=83.66 Aligned_cols=42 Identities=24% Similarity=0.438 Sum_probs=38.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
++++|.||++|||++. +.|++||++++||||.||..||+.+.
T Consensus 15 ~~e~i~qF~~iTg~~~-~~A~~~Le~~~WnLe~Av~~ff~~~~ 56 (62)
T 2dal_A 15 LKGLIQQFTTITGASE-SVGKHMLEACNNNLEMAVTMFLDGGG 56 (62)
T ss_dssp HHHHHHHHHHHTCCCH-HHHHHHHHTTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 6789999999999874 89999999999999999999998764
No 7
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=8.2e-10 Score=83.70 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=39.7
Q ss_pred Ccc-HH-HHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 1 MVD-VA-DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 1 m~~-~~-~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
|++ ++ ++|.+|++|||+++ +.|+++|+.++||||.||..||+...
T Consensus 12 m~~~~~q~~i~qF~~iTg~~~-~~A~~~Le~~~WdLe~Al~~ff~~~~ 58 (66)
T 2dzl_A 12 MDELRHQVMINQFVLAAGCAA-DQAKQLLQAAHWQFETALSTFFQETN 58 (66)
T ss_dssp CHHHHHHHHHHHHHHHHCCCH-HHHHHHHHTTTTCHHHHHHHHHTCSC
T ss_pred hhcCccHHHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 566 56 89999999999766 89999999999999999999998543
No 8
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=98.91 E-value=1.2e-08 Score=85.53 Aligned_cols=116 Identities=19% Similarity=0.289 Sum_probs=100.8
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
..|-..+|.+++..++..+|+++|++++++|..|..+...++.++.+.++++.+++++..|+...+...++..|++..+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P 88 (130)
T 2kuc_A 9 IAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP 88 (130)
T ss_dssp CCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred CCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence 45677899999999999999999999999999999999888888899999999999999999877788899999999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
.+.++... | .++.++.|..+.++|...|...+....
T Consensus 89 t~~~~d~~-G---~~~~~~~G~~~~~~l~~~l~~~~~~~~ 124 (130)
T 2kuc_A 89 TLLFINSS-G---EVVYRLVGAEDAPELLKKVKLGVESEG 124 (130)
T ss_dssp EEEEECTT-S---CEEEEEESCCCHHHHHHHHHHHHSCCC
T ss_pred EEEEECCC-C---cEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 99999753 2 456778899999999888887765543
No 9
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=98.86 E-value=1.5e-08 Score=89.56 Aligned_cols=114 Identities=10% Similarity=0.083 Sum_probs=97.1
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH--------------
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-------------- 235 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~-------------- 235 (412)
....+|.+++..|+.++|+++|+++.++|..|..+...+|.++.+.++++++|++...|+++....
T Consensus 31 ~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~ 110 (172)
T 3f9u_A 31 AKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGTERT 110 (172)
T ss_dssp CCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTEEEE
T ss_pred cchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcchhhh
Confidence 344589999999999999999999999999999999999999999999999999999998754411
Q ss_pred ----------HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCC-HHHHHHHHHHHHHhhh
Q 015165 236 ----------KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKS-PEEMLMILQKVIEESN 287 (412)
Q Consensus 236 ----------~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s-~~~ll~~L~~~ie~~~ 287 (412)
..+..|++..+|++++++..+ .++.+..|..+ +++|...|..+++++.
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G----~~~~~~~G~~~~~~~l~~~l~~~l~~~~ 169 (172)
T 3f9u_A 111 LRTVGDKWSYLQRVKFGANAQPFYVLIDNEG----NPLNKSYAYDEDISKYINFLQTGLENYR 169 (172)
T ss_dssp EEEHHHHHHHHHHHHHSCCCSSEEEEECTTS----CBSSCCBCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHcCCCCcceEEEECCCC----CEEeeccCCCCCHHHHHHHHHHHHHHhh
Confidence 116789999999999998742 45667779988 9999999999887753
No 10
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=98.84 E-value=2.6e-08 Score=86.95 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=97.3
Q ss_pred CCCCCCccCCHHHHHHHHHhcCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh---------hH
Q 015165 165 NVKPNFVSEGFMDALQRSRSVFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS---------EG 234 (412)
Q Consensus 165 ~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~---------Eg 234 (412)
...+.| .++.+++..++..+|+++|+++ .++|..|..+...++.++.+.++.+.++++...|+.+. ..
T Consensus 28 ~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~ 105 (154)
T 2ju5_A 28 AANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKN 105 (154)
T ss_dssp CCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHH
T ss_pred cCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhH
Confidence 345678 7899999999999999999999 89999999999999888999999888999999999864 35
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCC--CHHHHHHHHHHHHH
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVIE 284 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~--s~~~ll~~L~~~ie 284 (412)
..++..|++..+|.+.+++.. ..++.++ |.. +.+++++.|...+.
T Consensus 106 ~~l~~~~~v~~~Pt~~~~d~~----G~~~~~~-G~~~~~~~~l~~~l~~~l~ 152 (154)
T 2ju5_A 106 QELKAQYKVTGFPELVFIDAE----GKQLARM-GFEPGGGAAYVSKVKSALK 152 (154)
T ss_dssp HHHHHHTTCCSSSEEEEECTT----CCEEEEE-CCCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCEEEEEcCC----CCEEEEe-cCCCCCHHHHHHHHHHHHh
Confidence 678899999999999999863 3567788 988 89999888877653
No 11
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=98.28 E-value=5.7e-10 Score=93.80 Aligned_cols=116 Identities=18% Similarity=0.281 Sum_probs=98.7
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
.|... .+++..+..++|+++|++++++|..|..+...++.++.+.+.++.+++++.+|+++.+...++..|++..+|.
T Consensus 4 ~w~~~--~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt 81 (130)
T 2lst_A 4 RWYPY--PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPT 81 (130)
Confidence 45544 8999999999999999999999999999999999999999999989999999998888888999999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++++.+..| ++..+.++.|..++++|...|...+.+..
T Consensus 82 ~~~~d~~~G-~~~~~~~~~G~~~~~~l~~~l~~~~~~~~ 119 (130)
T 2lst_A 82 FVFLVPKAG-AWEEVGRLFGSRPRAEFLKELRQVCVKGG 119 (130)
Confidence 999976433 22116678899999999888888776653
No 12
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=98.74 E-value=1.5e-08 Score=89.10 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=92.4
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
..|. .+|++|++.|++++|++||+++.++|..|..+...++.++.+.++++.+||....|.... .++..+++..+|
T Consensus 27 i~W~-~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~---~~~~~~~v~~~P 102 (151)
T 3ph9_A 27 ITWV-QTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETT---DKNLSPDGQYVP 102 (151)
T ss_dssp SCCC-SSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCS---CGGGCTTCCCSS
T ss_pred Ccch-hCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCch---hhHhhcCCCCCC
Confidence 3444 599999999999999999999999999999999999999999999988999988874322 245678999999
Q ss_pred eEEEEeCCCCccceeeeeeecC----------CCHHHHHHHHHHHHHhhhHH
Q 015165 248 FCAVVMPAANQRIALLQQVEGP----------KSPEEMLMILQKVIEESNPA 289 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~----------~s~~~ll~~L~~~ie~~~~~ 289 (412)
.++++.+.+ .++.++.|. .+.+.++..+..++.++...
T Consensus 103 T~~f~~~~G----~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~~ 150 (151)
T 3ph9_A 103 RIMFVDPSL----TVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLIQSE 150 (151)
T ss_dssp EEEEECTTS----CBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCCC--
T ss_pred EEEEECCCC----CEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHHhcc
Confidence 999998642 456677787 45677888888888776654
No 13
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=98.52 E-value=4.7e-07 Score=81.38 Aligned_cols=88 Identities=16% Similarity=0.199 Sum_probs=75.0
Q ss_pred CCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhC---
Q 015165 165 NVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSL--- 241 (412)
Q Consensus 165 ~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l--- 241 (412)
.....|+. .+.+|++.|++++|++||+++.++|..|..+...+|.+++|.++++++||+...|+++.. .++..|
T Consensus 19 ~~~v~W~~-~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~--~l~~~y~~~ 95 (173)
T 3ira_A 19 YNPVDWYP-WGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERP--DIDNIYMTV 95 (173)
T ss_dssp TSSSCCBC-SSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCH--HHHHHHHHH
T ss_pred CCCCCCCC-cCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccC--cHHHHHHHH
Confidence 33346774 468999999999999999999999999999999999999999999999999999997532 333334
Q ss_pred -----CCCCCceEEEEeCC
Q 015165 242 -----KASRYPFCAVVMPA 255 (412)
Q Consensus 242 -----~~~~~P~l~lI~~~ 255 (412)
++..+|+++++.+.
T Consensus 96 ~q~~~gv~g~Pt~v~l~~d 114 (173)
T 3ira_A 96 CQIILGRGGWPLNIIMTPG 114 (173)
T ss_dssp HHHHHSCCCSSEEEEECTT
T ss_pred HHHHcCCCCCcceeeECCC
Confidence 89999999999874
No 14
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=98.49 E-value=4.8e-07 Score=76.05 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=84.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC-hhHHHHHhhCCC---CCCceE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEGFKMSNSLKA---SRYPFC 249 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~-~Eg~~va~~l~~---~~~P~l 249 (412)
.|++++..|+.++|+++|++++++|..|..+.. +|.++.+.+.++.++.+...|+++ .+...++..|++ ..+|.+
T Consensus 17 ~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~ 95 (133)
T 3fk8_A 17 QVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAV 95 (133)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEE
T ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceE
Confidence 578999999999999999999999999999985 688889999888889999999854 345678899999 999999
Q ss_pred EEEeCCCCccceeeeeeec-------CCCHHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEG-------PKSPEEMLMILQK 281 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G-------~~s~~~ll~~L~~ 281 (412)
++++.. ..++.+..| ..+.+++...|..
T Consensus 96 ~~~d~~----G~~~~~~~g~~~~~~~~~~~~~l~~~l~~ 130 (133)
T 3fk8_A 96 VVVNSD----GKVRYTTKGGELANARKMSDQGIYDFFAK 130 (133)
T ss_dssp EEECTT----SCEEEECCSCTTTTGGGSCHHHHHHHHHH
T ss_pred EEECCC----CCEEEEecCCcccccccCCHHHHHHHHHH
Confidence 999764 245666777 5676666655544
No 15
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=98.39 E-value=1.3e-06 Score=73.89 Aligned_cols=109 Identities=15% Similarity=0.103 Sum_probs=85.1
Q ss_pred CCCCc-c---CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC--hhHHHHHhh
Q 015165 167 KPNFV-S---EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNS 240 (412)
Q Consensus 167 ~p~F~-~---gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~--~Eg~~va~~ 240 (412)
.|.|. . .++..++..++ +|+++|++++++|..|..+...++.++.+.+.+. ++.+...|+++ .+...++..
T Consensus 10 ~~~f~~~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l~~~ 86 (134)
T 2fwh_A 10 HLNFTQIKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVALLKH 86 (134)
T ss_dssp CCCCEECCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHHHHH
T ss_pred CCCcEEecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHHHHH
Confidence 45664 2 33555555443 8999999999999999999988889889988776 58888888875 566788999
Q ss_pred CCCCCCceEEEEeCCCCccceee--eeeecCCCHHHHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALL--QQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl--~ri~G~~s~~~ll~~L~~~ 282 (412)
|++..+|.+.+++.. | .++ .+..|..+.++|.+.|..+
T Consensus 87 ~~v~~~Pt~~~~d~~-G---~~v~~~~~~G~~~~~~l~~~l~~~ 126 (134)
T 2fwh_A 87 LNVLGLPTILFFDGQ-G---QEHPQARVTGFMDAETFSAHLRDR 126 (134)
T ss_dssp TTCCSSSEEEEECTT-S---CBCGGGCBCSCCCHHHHHHHHHHC
T ss_pred cCCCCCCEEEEECCC-C---CEeeeeeeeeccCHHHHHHHHHhc
Confidence 999999999999763 2 344 5678999998887777643
No 16
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=98.02 E-value=4.2e-05 Score=61.55 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|.+++..++++.|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++ ...++..|++..+|.+.++
T Consensus 11 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 85 (112)
T 1ep7_A 11 AAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLF---ETLSNDYAGKVIFLKVDVDA--VAAVAEAAGITAMPTFHVY 85 (112)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--THHHHHHHTCCBSSEEEEE
T ss_pred HHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCeEEEEEECCc--hHHHHHHcCCCcccEEEEE
Confidence 468888888888899999999999999999888443 34544444578888888864 3467888999999997766
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
. .| .++.++.|. +++++.+.|...+
T Consensus 86 -~-~G---~~~~~~~G~-~~~~l~~~l~~~l 110 (112)
T 1ep7_A 86 -K-DG---VKADDLVGA-SQDKLKALVAKHA 110 (112)
T ss_dssp -E-TT---EEEEEEESC-CHHHHHHHHHHHH
T ss_pred -E-CC---eEEEEEcCC-CHHHHHHHHHHHh
Confidence 3 22 456678898 8888777776554
No 17
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=97.93 E-value=7.5e-05 Score=62.19 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|.+++..++...|+++|++++++|..|..+.. .+.++.++ ++.+...|+++ ...++..|++..+|.+.
T Consensus 25 ~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~ 96 (124)
T 1xfl_A 25 ETWNEQLQKANESKTLVVVDFTASWCGPCRFIAP------FFADLAKKLPNVLFLKVDTDE--LKSVASDWAIQAMPTFM 96 (124)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHH------HHHHHHHHCSSEEEEEEETTT--SHHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCcEEEEEECcc--CHHHHHHcCCCccCEEE
Confidence 4688889999889999999999999999998874 33444333 78888888864 34678899999999987
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
++ . .| .++.++.| .++++|...|...
T Consensus 97 ~~-~-~G---~~~~~~~G-~~~~~l~~~l~~~ 122 (124)
T 1xfl_A 97 FL-K-EG---KILDKVVG-AKKDELQSTIAKH 122 (124)
T ss_dssp EE-E-TT---EEEEEEES-CCHHHHHHHHHHH
T ss_pred EE-E-CC---EEEEEEeC-CCHHHHHHHHHHh
Confidence 76 3 22 56677888 4777776666543
No 18
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=97.89 E-value=0.0001 Score=59.68 Aligned_cols=98 Identities=8% Similarity=0.135 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..|++++..++..+|+++|++++++|..|..+.. .+.++.+. ++.+...|++. ...++..|++..+|.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~ 86 (118)
T 2vm1_A 15 QEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAP------VFAEYAKKFPGAIFLKVDVDE--LKDVAEAYNVEAMPTFL 86 (118)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCSBSEEE
T ss_pred HHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHCCCcEEEEEEccc--CHHHHHHcCCCcCcEEE
Confidence 5688999999999999999999999999998873 34444443 67888888764 34678899999999987
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
++. .| .++.++.| .+++++...|...+.
T Consensus 87 ~~~--~g---~~~~~~~g-~~~~~l~~~l~~~~~ 114 (118)
T 2vm1_A 87 FIK--DG---EKVDSVVG-GRKDDIHTKIVALMG 114 (118)
T ss_dssp EEE--TT---EEEEEEES-CCHHHHHHHHHHHHC
T ss_pred EEe--CC---eEEEEecC-CCHHHHHHHHHHHhc
Confidence 773 22 45667888 478888877776654
No 19
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=97.89 E-value=0.00012 Score=58.84 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|.+.+ ....|+++|++++++|..|..+...+ +.+.+.+..++.+...|+.+. ..++..|++..+|.+.++
T Consensus 15 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~ 86 (115)
T 1thx_A 15 AEFESEV---LKAEQPVLVYFWASWCGPCQLMSPLI---NLAANTYSDRLKVVKLEIDPN--PTTVKKYKVEGVPALRLV 86 (115)
T ss_dssp GGHHHHT---TTCSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEESTTC--HHHHHHTTCCSSSEEEEE
T ss_pred cchhhHh---hcCCceEEEEEECCCCHHHHHhHHHH---HHHHHHhCCcEEEEEEEcCCC--HHHHHHcCCCceeEEEEE
Confidence 3454443 35789999999999999999998543 455555555788888888754 357889999999999988
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
. .| .++.+..|..+.+.|.+.|...+.
T Consensus 87 -~-~G---~~~~~~~g~~~~~~l~~~l~~~l~ 113 (115)
T 1thx_A 87 -K-GE---QILDSTEGVISKDKLLSFLDTHLN 113 (115)
T ss_dssp -E-TT---EEEEEEESCCCHHHHHHHHHHHHC
T ss_pred -c-CC---EEEEEecCCCCHHHHHHHHHHHhc
Confidence 3 23 466778899999988888876654
No 20
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=97.88 E-value=6.9e-05 Score=59.62 Aligned_cols=99 Identities=12% Similarity=0.096 Sum_probs=73.9
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|++++. +.|+++|++++++|..|..+...+ ..+.+-+..++.+...|+.. ...++..|++..+|.+.
T Consensus 10 ~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~ 80 (109)
T 3tco_A 10 TEENFDEVIR----NNKLVLVDCWAEWCAPCHLYEPIY---KKVAEKYKGKAVFGRLNVDE--NQKIADKYSVLNIPTTL 80 (109)
T ss_dssp CTTTHHHHHH----HSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTT--CHHHHHHTTCCSSSEEE
T ss_pred cHHHHHHHHh----cCCeEEEEEECCCCHHHHhhhHHH---HHHHHHhCCCceEEEEcccc--CHHHHHhcCcccCCEEE
Confidence 4456777663 489999999999999999888322 34444444567888888764 34678899999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++ . .| .++.+..|..+.++|...|...+
T Consensus 81 ~~-~-~g---~~~~~~~g~~~~~~l~~~l~~~l 108 (109)
T 3tco_A 81 IF-V-NG---QLVDSLVGAVDEDTLESTVNKYL 108 (109)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHHHC
T ss_pred EE-c-CC---cEEEeeeccCCHHHHHHHHHHHh
Confidence 88 3 23 46677889999998888877654
No 21
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=97.87 E-value=6.8e-05 Score=60.29 Aligned_cols=97 Identities=10% Similarity=0.181 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|.+++..++..+|+++|++++++|..|..+.. .+.++.+. ++.+...|+++. ..++..|++..+|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 84 (113)
T 1ti3_A 13 DTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAP------IFAELAKKFPNVTFLKVDVDEL--KAVAEEWNVEAMPTFI 84 (113)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHH------HHHHHHHHCSSEEEEEEETTTC--HHHHHHHHCSSTTEEE
T ss_pred HHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHH------HHHHHHHhCCCcEEEEEEcccc--HHHHHhCCCCcccEEE
Confidence 4688888888889999999999999999998873 33444433 688888888643 3577889999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++. . ..++.++.| .+++.|...|...+
T Consensus 85 ~~~--~---G~~~~~~~g-~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 85 FLK--D---GKLVDKTVG-ADKDGLPTLVAKHA 111 (113)
T ss_dssp EEE--T---TEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred EEe--C---CEEEEEEec-CCHHHHHHHHHHhh
Confidence 873 2 246677888 57777777776554
No 22
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=97.86 E-value=0.00018 Score=57.55 Aligned_cols=91 Identities=12% Similarity=0.080 Sum_probs=71.5
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
...|+++|++++++|..|..+...+ +.+.+.+..++.+...|+++.. .++..|++..+|.+.++.. | .++
T Consensus 20 ~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~~--g---~~~ 89 (111)
T 3gnj_A 20 DEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEK--TLFQRFSLKGVPQILYFKD--G---EYK 89 (111)
T ss_dssp TSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCH--HHHHHTTCCSSCEEEEEET--T---EEE
T ss_pred hcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcCh--hHHHhcCCCcCCEEEEEEC--C---EEE
Confidence 5679999999999999999988433 4555555557888888887543 6788999999999988832 2 456
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ie 284 (412)
.+..|..+.+.|...|...+.
T Consensus 90 ~~~~g~~~~~~l~~~l~~~l~ 110 (111)
T 3gnj_A 90 GKMAGDVEDDEVEQMIADVLE 110 (111)
T ss_dssp EEEESSCCHHHHHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHhc
Confidence 778899999998888877654
No 23
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=97.84 E-value=0.00012 Score=59.98 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|.+++..|+...|+++|++++++|..|..+.. +| ..+.+-.. ++.+...|+++ ...++..|++..+|.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l--~~~~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~ 94 (122)
T 2vlu_A 21 EQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAP-VF--ADLAKKFP-NAVFLKVDVDE--LKPIAEQFSVEAMPTFLFM 94 (122)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH-HH--HHHHHHCT-TSEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHCC-CcEEEEEECCC--CHHHHHHcCCCcccEEEEE
Confidence 4688888888889999999999999999998873 22 12333222 47788888765 3457889999999997766
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
. .| .++.++.|.. .++|.+.|...+
T Consensus 95 -~-~G---~~~~~~~G~~-~~~l~~~l~~~l 119 (122)
T 2vlu_A 95 -K-EG---DVKDRVVGAI-KEELTAKVGLHA 119 (122)
T ss_dssp -E-TT---EEEEEEESSC-HHHHHHHHHHHH
T ss_pred -e-CC---EEEEEEeCcC-HHHHHHHHHHHh
Confidence 3 22 4567788988 888777776654
No 24
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=97.84 E-value=7.5e-05 Score=61.74 Aligned_cols=95 Identities=7% Similarity=0.044 Sum_probs=74.0
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
+...+|+++|++++++|..|..+...+ ..+.+-+..++.+...|+...+...++..|++..+|.+.++.+. | .
T Consensus 22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~-G---~ 94 (126)
T 2l57_A 22 EAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKE-G---N 94 (126)
T ss_dssp TCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTT-C---C
T ss_pred HHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCC-C---C
Confidence 456789999999999999999888543 45555555678899998444455678899999999999999863 2 4
Q ss_pred eeeeeecCCCHHHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++.++.|..+.++|.+.|...+
T Consensus 95 ~~~~~~G~~~~~~l~~~l~~~~ 116 (126)
T 2l57_A 95 KFYVHQGLMRKNNIETILNSLG 116 (126)
T ss_dssp EEEEEESCCCHHHHHHHHHHHC
T ss_pred EEEEecCCCCHHHHHHHHHHHh
Confidence 5667889999988887776654
No 25
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=97.83 E-value=0.00015 Score=58.83 Aligned_cols=97 Identities=10% Similarity=0.084 Sum_probs=75.6
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|.+++ ..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+++. ..++..|++..+|.+.
T Consensus 7 ~~~~~~~~~-----~~~~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~ 76 (112)
T 2voc_A 7 TDQSFSAET-----SEGVVLADFWAPWCGPSKMIAPVL---EELDQEMGDKLKIVKIDVDEN--QETAGKYGVMSIPTLL 76 (112)
T ss_dssp CTTTHHHHH-----SSSEEEEEEECTTBGGGGGHHHHH---HHHHHHHTTTCEEEEEETTTC--CSHHHHTTCCSBSEEE
T ss_pred cHHHHHHHh-----CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCcEEEEEECCCC--HHHHHHcCCCcccEEE
Confidence 345677777 789999999999999999998544 456666666788888888753 3578899999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
++ . .| .++.+..|..+.++|.+.|...
T Consensus 77 ~~-~-~G---~~~~~~~G~~~~~~l~~~l~~~ 103 (112)
T 2voc_A 77 VL-K-DG---EVVETSVGFKPKEALQELVNKH 103 (112)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHTT
T ss_pred EE-e-CC---EEEEEEeCCCCHHHHHHHHHHH
Confidence 88 4 23 4677889999988887776543
No 26
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=97.81 E-value=8.9e-05 Score=58.74 Aligned_cols=96 Identities=14% Similarity=0.061 Sum_probs=73.5
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|.+++ ..|+++|++++++|..|..+...+ ..+.+-+.+++.+...|++.. ..++..|++..+|.+.
T Consensus 9 ~~~~~~~~~-----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 78 (106)
T 3die_A 9 TDADFDSKV-----ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDEN--PSTAAKYEVMSIPTLI 78 (106)
T ss_dssp CTTTHHHHS-----CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSBSEEE
T ss_pred CHHHHHHHh-----cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcC--HHHHHhCCCcccCEEE
Confidence 445677776 789999999999999999998443 455555555688888887644 3578899999999998
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
++. .| .++.+..|..+.+++.+.|..
T Consensus 79 ~~~--~G---~~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 3die_A 79 VFK--DG---QPVDKVVGFQPKENLAEVLDK 104 (106)
T ss_dssp EEE--TT---EEEEEEESCCCHHHHHHHHHT
T ss_pred EEe--CC---eEEEEEeCCCCHHHHHHHHHH
Confidence 884 22 456788899998888777654
No 27
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=97.81 E-value=0.00012 Score=61.63 Aligned_cols=100 Identities=8% Similarity=0.072 Sum_probs=76.7
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
..+|.+++..+...+|+++|++++++|..|..+.. .+.++.+ .++.+...|+++ ...++..|++..+|.+
T Consensus 32 ~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~------~l~~l~~~~~~v~~~~v~~~~--~~~~~~~~~v~~~Pt~ 103 (139)
T 3d22_A 32 KERWDQKLSEASRDGKIVLANFSARWCGPSRQIAP------YYIELSENYPSLMFLVIDVDE--LSDFSASWEIKATPTF 103 (139)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--SHHHHHHTTCCEESEE
T ss_pred HHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEeCcc--cHHHHHHcCCCcccEE
Confidence 35788899999889999999999999999998874 3334333 368888888864 3467889999999998
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.++ . .| .++.++.|. ++++|...|...+..
T Consensus 104 ~~~-~-~G---~~~~~~~G~-~~~~l~~~l~~~~~~ 133 (139)
T 3d22_A 104 FFL-R-DG---QQVDKLVGA-NKPELHKKITAILDS 133 (139)
T ss_dssp EEE-E-TT---EEEEEEESC-CHHHHHHHHHHHHHT
T ss_pred EEE-c-CC---eEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 877 3 22 567788898 788877777766643
No 28
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=97.80 E-value=3.9e-05 Score=64.36 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=77.8
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeee
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ 264 (412)
..+..||++..++|..|..|...|+....+.+-+. ++.+...|+++.....++..|++...|.++++.. | ..+.
T Consensus 17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~--G---~ev~ 90 (116)
T 3dml_A 17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELARPVTFTPTFVLMAG--D---VESG 90 (116)
T ss_dssp --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSSCCCSSSEEEEEET--T---EEEE
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHCCCCCCCEEEEEEC--C---EEEe
Confidence 34789999999999999999988887766554433 3566678888766566778899999999999982 3 5677
Q ss_pred eeecCCCHHHHHHHHHHHHHhhhH
Q 015165 265 QVEGPKSPEEMLMILQKVIEESNP 288 (412)
Q Consensus 265 ri~G~~s~~~ll~~L~~~ie~~~~ 288 (412)
|+.|..+++.|...|..++.++.|
T Consensus 91 Ri~G~~~~~~f~~~L~~~l~~~~~ 114 (116)
T 3dml_A 91 RLEGYPGEDFFWPMLARLIGQAEP 114 (116)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHC-
T ss_pred eecCCCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999998877654
No 29
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=97.79 E-value=0.00013 Score=57.89 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|.+++ +..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+++. ..++..|++..+|.+.+
T Consensus 8 ~~~~~~~~----~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 78 (109)
T 2yzu_A 8 DQNFDETL----GQHPLVLVDFWAEWCAPCRMIAPIL---EEIAKEYEGKLLVAKLDVDEN--PKTAMRYRVMSIPTVIL 78 (109)
T ss_dssp TTTHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTC--HHHHHHTTCCSSSEEEE
T ss_pred HhHHHHHh----cCCCeEEEEEECCCCHHHHHhhHHH---HHHHHHhhCceEEEEEECCCC--HhHHHhCCCCcCCEEEE
Confidence 34566544 4689999999999999999988543 455555555788888888754 35788999999999998
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+ . .| .++.+..|..+.+.+.+.|...+
T Consensus 79 ~-~-~g---~~~~~~~g~~~~~~l~~~l~~~l 105 (109)
T 2yzu_A 79 F-K-DG---QPVEVLVGAQPKRNYQAKIEKHL 105 (109)
T ss_dssp E-E-TT---EEEEEEESCCCHHHHHHHHHTTC
T ss_pred E-e-CC---cEeeeEeCCCCHHHHHHHHHHHh
Confidence 8 3 23 45667889999888877776544
No 30
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=97.79 E-value=0.00016 Score=57.41 Aligned_cols=96 Identities=8% Similarity=0.057 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|.+.+ .+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+++.. .++..|++..+|.+.++
T Consensus 10 ~~~~~~~---~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~ 81 (107)
T 2i4a_A 10 SSFDQDV---LKASGLVLVDFWAEWCGPCKMIGPAL---GEIGKEFAGKVTVAKVNIDDNP--ETPNAYQVRSIPTLMLV 81 (107)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTSEEEEEEETTTCC--HHHHHTTCCSSSEEEEE
T ss_pred hhhhHHH---HhCCCEEEEEEECCCChhHHHHhHHH---HHHHHHhCCcEEEEEEECCCCH--HHHHhcCCCccCEEEEE
Confidence 4455444 46789999999999999999988544 4566666667889998887543 57888999999999988
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
. .| .++.+..|..+.+.+.+.|..
T Consensus 82 -~-~G---~~~~~~~G~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 82 -R-DG---KVIDKKVGALPKSQLKAWVES 105 (107)
T ss_dssp -E-TT---EEEEEEESCCCHHHHHHHHHH
T ss_pred -e-CC---EEEEEecCCCCHHHHHHHHHh
Confidence 3 23 456678899998887776653
No 31
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=97.79 E-value=0.00025 Score=55.58 Aligned_cols=98 Identities=11% Similarity=0.049 Sum_probs=71.9
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|++++ +..|+++|++++++|..|..+...+ ..+.+-+.+ +.+...|+++. ..++..|++..+|.+.+
T Consensus 6 ~~~~~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~-~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~ 75 (104)
T 2e0q_A 6 SKNFDSFL----ASHEIAVVDFWAEWCAPCLILAPII---EELAEDYPQ-VGFGKLNSDEN--PDIAARYGVMSLPTVIF 75 (104)
T ss_dssp TTTHHHHH----HHSSEEEEEEECTTCHHHHHHHHHH---HHHHHHCTT-SEEEEEETTTC--HHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHH----hcCCcEEEEEECCCChhHHHHhHHH---HHHHHHcCC-ceEEEEECCCC--HHHHHhCCccccCEEEE
Confidence 34677776 4689999999999999999887432 233333333 77888887643 35788999999999998
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+ . .| .++.+..|..+.+.+.+.|...+.
T Consensus 76 ~-~-~g---~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 76 F-K-DG---EPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp E-E-TT---EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred E-E-CC---eEhhhccCCCCHHHHHHHHHHHhc
Confidence 8 3 23 456778899998888887776653
No 32
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=97.77 E-value=0.00022 Score=58.54 Aligned_cols=95 Identities=15% Similarity=0.112 Sum_probs=70.8
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
.+...+..|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++. ..++..|++..+|.+.++ . .|
T Consensus 24 ~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l---~~~~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~~~-~-~G- 95 (119)
T 1w4v_A 24 QDRVVNSETPVVVDFHAQWCGPCKILGPRL---EKMVAKQHGKVVMAKVDIDDH--TDLAIEYEVSAVPTVLAM-K-NG- 95 (119)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEETTTT--HHHHHHTTCCSSSEEEEE-E-TT-
T ss_pred HHHHHcCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCCCC--HHHHHHcCCCcccEEEEE-e-CC-
Confidence 333445689999999999999999987433 344444445788888888653 367889999999999888 3 23
Q ss_pred cceeeeeeecCCCHHHHHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.++.+..|..+.+.|...|...+
T Consensus 96 --~~~~~~~G~~~~~~l~~~l~~~l 118 (119)
T 1w4v_A 96 --DVVDKFVGIKDEDQLEAFLKKLI 118 (119)
T ss_dssp --EEEEEEESCCCHHHHHHHHHHHH
T ss_pred --cEEEEEcCCCCHHHHHHHHHHHh
Confidence 45677889989888877776554
No 33
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=97.76 E-value=3.8e-05 Score=64.02 Aligned_cols=115 Identities=8% Similarity=0.170 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh
Q 015165 154 EFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE 233 (412)
Q Consensus 154 ~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E 233 (412)
.|...|.+.|+. .|.|-. .-.+.+..+...+|+++|++++++|..|..+...+ +.+.+-+..++.+...|++...
T Consensus 12 ~f~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~ 86 (128)
T 3ul3_B 12 RFDKYYLRMFKK-VPRLQQ-NGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNE 86 (128)
T ss_dssp ---------------CCCC-CCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCH
T ss_pred HHHHHHHHHhcc-CCcccc-CCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCH
Confidence 455555555543 344431 11223445567899999999999999999988543 4566666668888888886543
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 234 GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 234 g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
.++..|++..+|.+.++. .| .++.+..|..+.++|.+.|.
T Consensus 87 --~l~~~~~v~~~Pt~~~~~--~G---~~~~~~~G~~~~~~l~~~l~ 126 (128)
T 3ul3_B 87 --SLARKFSVKSLPTIILLK--NK---TMLARKDHFVSSNDLIALIK 126 (128)
T ss_dssp --HHHHHTTCCSSSEEEEEE--TT---EEEEEESSCCCHHHHHHHHT
T ss_pred --HHHHHcCCCCcCEEEEEE--CC---EEEEEecCCCCHHHHHHHHH
Confidence 678899999999999983 23 46778889999988877664
No 34
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.75 E-value=0.00031 Score=66.58 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=78.0
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|++.+. ...+|+++|+++.++|..|..+...+ +.+.+-...++++...|+++. -.++..|++..+|++.
T Consensus 13 ~~~~f~~~~~--~~~~~~v~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~ 85 (287)
T 3qou_A 13 NESNLQQVLE--QSMTTPVLFYFWSERSQHCLQLTPIL---ESLAAQYNGQFILAKLDCDAE--QMIAAQFGLRAIPTVY 85 (287)
T ss_dssp CTTTHHHHHT--TTTTSCEEEEEECTTCTTTTTTHHHH---HHHHHHHTSSSEEEEEETTTC--HHHHHTTTCCSSSEEE
T ss_pred CHHHHHHHHH--hcCCCeEEEEEECCCChHHHHHHHHH---HHHHHHcCCCeEEEEEeCccC--HHHHHHcCCCCCCeEE
Confidence 4457777552 34589999999999999999887332 344444555799999998754 3778999999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
++.. | .++.+..|..+.+.+...|...+..
T Consensus 86 ~~~~--G---~~~~~~~g~~~~~~l~~~l~~~lp~ 115 (287)
T 3qou_A 86 LFQN--G---QPVDGFQGPQPEEAIRALLDXVLPR 115 (287)
T ss_dssp EEET--T---EEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred EEEC--C---EEEEEeeCCCCHHHHHHHHHHHcCC
Confidence 8842 3 4677888999988888888776643
No 35
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=97.73 E-value=0.00015 Score=61.02 Aligned_cols=90 Identities=12% Similarity=-0.036 Sum_probs=70.2
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeee
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ 264 (412)
.+|+++|++++++|..|..+...+ ..+.+-+..++.++..|++.. ..++..|++..+|.++++... + .++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~~~-g---~~~- 119 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKE--PELARDFGIQSIPTIWFVPMK-G---EPQ- 119 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEECSS-S---CCE-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCC--HHHHHHcCCCCcCEEEEEeCC-C---CEE-
Confidence 579999999999999999998443 455555666788888888654 367889999999999998763 2 233
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q 015165 265 QVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 265 ri~G~~s~~~ll~~L~~~ie 284 (412)
+..|..+.++|...|...+.
T Consensus 120 ~~~G~~~~~~l~~~l~~~l~ 139 (141)
T 3hxs_A 120 VNMGALSKEQLKGYIDKVLL 139 (141)
T ss_dssp EEESCCCHHHHHHHHHHTTC
T ss_pred EEeCCCCHHHHHHHHHHHHc
Confidence 67799999988888876553
No 36
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=97.72 E-value=0.00029 Score=57.36 Aligned_cols=90 Identities=11% Similarity=0.130 Sum_probs=65.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.|++++..+ ..|+++|+++.++|..|..+. |.+.++-+ .++++...|+++ ...++..|++..+|++.+
T Consensus 10 ~f~~~l~~~--~~k~vvv~F~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~V~~~PT~~~ 79 (105)
T 3zzx_A 10 DFTKQLNEA--GNKLVVIDFYATWCGPCKMIA------PKLEELSQSMSDVVFLKVDVDE--CEDIAQDNQIACMPTFLF 79 (105)
T ss_dssp HHHHHHHHT--TTSEEEEEEECTTCHHHHHHH------HHHHHHHHHCTTEEEEEEETTT--CHHHHHHTTCCBSSEEEE
T ss_pred HHHHHHHhc--CCCEEEEEEECCCCCCccCCC------cchhhhhhccCCeEEEEEeccc--CHHHHHHcCCCeecEEEE
Confidence 466666654 468999999999999999887 33333333 368888888864 456899999999999887
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
+-. | .++.++.|. ++++|.+.|
T Consensus 80 ~~~--G---~~v~~~~G~-~~~~l~~~i 101 (105)
T 3zzx_A 80 MKN--G---QKLDSLSGA-NYDKLLELV 101 (105)
T ss_dssp EET--T---EEEEEEESC-CHHHHHHHH
T ss_pred EEC--C---EEEEEEeCc-CHHHHHHHH
Confidence 742 3 567888894 676655444
No 37
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=97.72 E-value=1.7e-05 Score=75.92 Aligned_cols=42 Identities=14% Similarity=0.438 Sum_probs=38.2
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
++.+++.||++|||+++ ..|+++|++|+||||.|+..||+.+
T Consensus 14 ~~~~~i~qF~~iTg~~~-~~A~~~L~~~~WdLe~Al~~ff~~~ 55 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDP-KVSRKYLQRNHWNINYALNDYYDKE 55 (270)
T ss_dssp HHHHHHHHHHHHHCCCH-HHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCH-HHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 36788999999999777 8999999999999999999999754
No 38
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=97.71 E-value=0.00028 Score=56.16 Aligned_cols=98 Identities=8% Similarity=-0.006 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|.+.+ .+..|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++.. .++..|++..+|.+.++
T Consensus 10 ~~f~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~v~~~Pt~~~~ 81 (108)
T 2trx_A 10 DSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLLLF 81 (108)
T ss_dssp TTHHHHT---TTCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTCT--THHHHTTCCSSSEEEEE
T ss_pred hhHHHHH---HhcCCeEEEEEECCCCHhHHHHHHHH---HHHHHHhCCCcEEEEEECCCCH--HHHHHcCCcccCEEEEE
Confidence 3455443 46789999999999999999887443 3455555557888888886533 57788999999999888
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
. .| .++.++.|..+.++|.+.|...+
T Consensus 82 -~-~G---~~~~~~~G~~~~~~l~~~l~~~l 107 (108)
T 2trx_A 82 -K-NG---EVAATKVGALSKGQLKEFLDANL 107 (108)
T ss_dssp -E-TT---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred -e-CC---EEEEEEecCCCHHHHHHHHHHhh
Confidence 3 23 45677889999988887776554
No 39
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=97.70 E-value=0.00022 Score=58.44 Aligned_cols=94 Identities=11% Similarity=0.143 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|++++..+ ..|+++|+++.++|..|..+. +.+.++.++ ++.+...|++. ...++..|++..+|.+.
T Consensus 20 ~~f~~~l~~~--~~k~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~~v~~~~vd~d~--~~~l~~~~~v~~~Pt~~ 89 (116)
T 3qfa_C 20 TAFQEALDAA--GDKLVVVDFSATWCGPSKMIK------PFFHSLSEKYSNVIFLEVDVDD--CQDVASECEVKSMPTFQ 89 (116)
T ss_dssp HHHHHHHHHH--TTSCEEEEEECTTCHHHHHHH------HHHHHHHTTCTTSEEEEEETTT--THHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHhc--CCCEEEEEEECCCCHHHHHHH------HHHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCccccEEE
Confidence 3456655443 689999999999999999887 344444443 47888888864 34678899999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
++ . .| .++.++.|. ++++|.+.|...
T Consensus 90 ~~-~-~G---~~~~~~~G~-~~~~l~~~l~~~ 115 (116)
T 3qfa_C 90 FF-K-KG---QKVGEFSGA-NKEKLEATINEL 115 (116)
T ss_dssp EE-S-SS---SEEEEEESC-CHHHHHHHHHHH
T ss_pred EE-e-CC---eEEEEEcCC-CHHHHHHHHHHh
Confidence 87 3 23 456778898 888887777643
No 40
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=97.70 E-value=0.00011 Score=58.33 Aligned_cols=91 Identities=9% Similarity=-0.003 Sum_probs=68.8
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccc
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~ 260 (412)
.+.+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+++. ..++..|++..+|.+.++ . .|
T Consensus 12 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~-~-~G--- 81 (105)
T 1nsw_A 12 QAIQGDGPVLVDFWAAWCGPCRMMAPVL---EEFAEAHADKVTVAKLNVDEN--PETTSQFGIMSIPTLILF-K-GG--- 81 (105)
T ss_dssp HHHSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHSTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEE-E-TT---
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCcEEEEEECcCC--HHHHHHcCCccccEEEEE-e-CC---
Confidence 3446779999999999999999888543 445555555688888888653 467889999999999988 3 23
Q ss_pred eeeeeeecCCCHHHHHHHHHH
Q 015165 261 ALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 261 ~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.++.+..|..+.+.+.+.|..
T Consensus 82 ~~~~~~~G~~~~~~l~~~l~~ 102 (105)
T 1nsw_A 82 RPVKQLIGYQPKEQLEAQLAD 102 (105)
T ss_dssp EEEEEEESCCCHHHHHHHTTT
T ss_pred eEEEEEecCCCHHHHHHHHHH
Confidence 456778899998887766643
No 41
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=97.70 E-value=0.00025 Score=60.38 Aligned_cols=102 Identities=11% Similarity=0.035 Sum_probs=77.9
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-...|.+++ ...|+++|++++++|..|..+...+ ..+.+-+..++.+...|+.... .++..|++..+|.+.
T Consensus 44 ~~~~~~~~~----~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pt~~ 114 (148)
T 3p2a_A 44 TAETLDKLL----QDDLPMVIDFWAPWCGPCRSFAPIF---AETAAERAGKVRFVKVNTEAEP--ALSTRFRIRSIPTIM 114 (148)
T ss_dssp CTTTHHHHT----TCSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCH--HHHHHTTCCSSSEEE
T ss_pred CHHHHHHHH----hcCCcEEEEEECCCCHHHHHHHHHH---HHHHHHcCCceEEEEEECcCCH--HHHHHCCCCccCEEE
Confidence 344566655 7789999999999999999887433 3455555557888888886543 678899999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
++. .| .++.++.|..+.+.|...|...+.+.
T Consensus 115 ~~~--~G---~~~~~~~G~~~~~~l~~~l~~~l~~~ 145 (148)
T 3p2a_A 115 LYR--NG---KMIDMLNGAVPKAPFDNWLDEQLSRD 145 (148)
T ss_dssp EEE--TT---EEEEEESSCCCHHHHHHHHHHHHHSC
T ss_pred EEE--CC---eEEEEEeCCCCHHHHHHHHHHHhccc
Confidence 884 23 46678899999999999998877653
No 42
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.00045 Score=55.51 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=66.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
+|.+++.. +..+|+++|++++++|..|..+...+ +.+.+-+ ..++.+...|+++. ..++..|++..+|.+.++
T Consensus 10 ~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 83 (112)
T 3d6i_A 10 QFTYLTTT-AAGDKLIVLYFHTSWAEPCKALKQVF---EAISNEPSNSNVSFLSIDADEN--SEISELFEISAVPYFIII 83 (112)
T ss_dssp HHHHHHTT-TTTTCCEEEEEECCC--CHHHHHHHH---HHHHHCGGGTTSEEEEEETTTC--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHhc-ccCCCEEEEEEECCCCHHHHHHHHHH---HHHHHhcCCCCEEEEEEecccC--HHHHHHcCCCcccEEEEE
Confidence 45555554 45689999999999999999988432 2333322 23688888888754 357888999999998877
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
. .| .++.++.|. ++++|.+.|...+
T Consensus 84 ~--~G---~~~~~~~G~-~~~~l~~~l~~~~ 108 (112)
T 3d6i_A 84 H--KG---TILKELSGA-DPKEYVSLLEDCK 108 (112)
T ss_dssp E--TT---EEEEEECSC-CHHHHHHHHHHHH
T ss_pred E--CC---EEEEEecCC-CHHHHHHHHHHHH
Confidence 3 23 466778887 4555666665544
No 43
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=97.69 E-value=0.00036 Score=60.61 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=71.6
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
+..|+++|++++++|..|..|...+ +.+.+-+..++.+...|+.+. ..++..|++..+|.+.++. .| .++
T Consensus 62 ~~~~~vlv~F~a~wC~~C~~~~p~l---~~la~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~G---~~~ 131 (155)
T 2ppt_A 62 RDDLPLLVDFWAPWCGPCRQMAPQF---QAAAATLAGQVRLAKIDTQAH--PAVAGRHRIQGIPAFILFH--KG---REL 131 (155)
T ss_dssp TCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTS--THHHHHTTCCSSSEEEEEE--TT---EEE
T ss_pred hCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHccCCEEEEEEeCCcc--HHHHHHcCCCcCCEEEEEe--CC---eEE
Confidence 6789999999999999999998543 455555665788888888654 3578899999999998883 22 456
Q ss_pred eeeecCCCHHHHHHHHHHHHH
Q 015165 264 QQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ie 284 (412)
.++.|..+.++|.+.|...+.
T Consensus 132 ~~~~G~~~~~~l~~~l~~~l~ 152 (155)
T 2ppt_A 132 ARAAGARPASELVGFVRGKLG 152 (155)
T ss_dssp EEEESCCCHHHHHHHHHHHHC
T ss_pred EEecCCCCHHHHHHHHHHHhc
Confidence 788899999888888876654
No 44
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=97.68 E-value=0.00022 Score=56.76 Aligned_cols=92 Identities=9% Similarity=0.021 Sum_probs=68.8
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccc
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~ 260 (412)
...+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+++. ..++..|++..+|.+.++ . .|
T Consensus 14 ~~~~~~~~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~-~-~G--- 83 (107)
T 1dby_A 14 VVLESSVPVLVDFWAPWCGPCRIIAPVV---DEIAGEYKDKLKCVKLNTDES--PNVASEYGIRSIPTIMVF-K-GG--- 83 (107)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHHTCCSSCEEEEE-S-SS---
T ss_pred HHhcCCCcEEEEEECCCCHhHHHHHHHH---HHHHHHhCCceEEEEEECCCC--HHHHHHCCCCcCCEEEEE-e-CC---
Confidence 3456689999999999999999888443 445555555788888887653 357788999999998776 3 23
Q ss_pred eeeeeeecCCCHHHHHHHHHHH
Q 015165 261 ALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 261 ~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
.++.+..|..+.+++.+.|...
T Consensus 84 ~~~~~~~G~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 84 KKCETIIGAVPKATIVQTVEKY 105 (107)
T ss_dssp SEEEEEESCCCHHHHHHHHHHH
T ss_pred EEEEEEeCCCCHHHHHHHHHHH
Confidence 3566788999988887777654
No 45
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=97.66 E-value=0.00031 Score=59.54 Aligned_cols=97 Identities=14% Similarity=0.029 Sum_probs=76.0
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
.+......|+++|++++++|..|..|...+ +.+.+-+..++.+...|++.. ..++..|++..+|.++++.. |
T Consensus 17 ~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~--G- 88 (140)
T 3hz4_A 17 SQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATN--PWTAEKYGVQGTPTFKFFCH--G- 88 (140)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTC--HHHHHHHTCCEESEEEEEET--T-
T ss_pred HHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcC--HhHHHHCCCCcCCEEEEEeC--C-
Confidence 335556789999999999999999988544 566666666788888888654 46788999999999888732 3
Q ss_pred cceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.++.+..|..+.+.|.+.|...+..
T Consensus 89 --~~~~~~~G~~~~~~l~~~l~~~l~~ 113 (140)
T 3hz4_A 89 --RPVWEQVGQIYPSILKNAVRDMLQH 113 (140)
T ss_dssp --EEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred --cEEEEEcCCCCHHHHHHHHHHHhcc
Confidence 4567888999999998888877754
No 46
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.66 E-value=0.00024 Score=58.76 Aligned_cols=102 Identities=8% Similarity=0.044 Sum_probs=75.9
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|.+.+ .+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|++.. ..++..|++..+|.+.+
T Consensus 24 ~~~f~~~~---~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 95 (130)
T 2dml_A 24 PSNFNREV---IQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKH--QSLGGQYGVQGFPTIKI 95 (130)
T ss_dssp TTTHHHHT---TTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTC--HHHHHHHTCCSSSEEEE
T ss_pred HHHHHHHH---hcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCC--HHHHHHcCCCccCEEEE
Confidence 34555543 35688999999999999999988543 455555555688888887643 45788899999999999
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+... + .++.+..|..+.++|++.|...+..
T Consensus 96 ~~~~-~---~~~~~~~G~~~~~~l~~~l~~~l~~ 125 (130)
T 2dml_A 96 FGAN-K---NKPEDYQGGRTGEAIVDAALSALRS 125 (130)
T ss_dssp ESSC-T---TSCEECCSCCSHHHHHHHHHHHHHH
T ss_pred EeCC-C---CeEEEeecCCCHHHHHHHHHHHHhc
Confidence 8763 2 2455678999999998888877654
No 47
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=97.64 E-value=0.00037 Score=57.32 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=71.9
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..|+..+..+..++..|+++|++++++|..|..+...+ +.+.+-+ .++.+...|+... ..++..|++..+|.+.
T Consensus 8 ~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l---~~l~~~~-~~v~~~~vd~~~~--~~~~~~~~i~~~Pt~~ 81 (118)
T 2f51_A 8 FNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQIL---PSIAEAN-KDVTFIKVDVDKN--GNAADAYGVSSIPALF 81 (118)
T ss_dssp ECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEE
T ss_pred ecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHC-CCeEEEEEECCCC--HHHHHhcCCCCCCEEE
Confidence 46777777766777899999999999999999888443 3444434 5788888888754 4578899999999999
Q ss_pred EEeCCCCccceeeeeeecCCCH
Q 015165 251 VVMPAANQRIALLQQVEGPKSP 272 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~ 272 (412)
++... +....++.++.|..+.
T Consensus 82 ~~~~~-~~~G~~~~~~~G~~~~ 102 (118)
T 2f51_A 82 FVKKE-GNEIKTLDQFVGADVS 102 (118)
T ss_dssp EEEEE-TTEEEEEEEEESCCHH
T ss_pred EEeCC-CCcceEEEeecCCCHH
Confidence 88642 2235778889997653
No 48
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=97.63 E-value=0.00022 Score=59.72 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=74.4
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|.+.+ .+..|+++|++++++|..|..+...+ +.+.+.+..++.+...|+++.. .++..|++..+|.+.
T Consensus 28 ~~~~f~~~~---~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~Pt~~ 99 (128)
T 2o8v_B 28 TDDSFDTDV---LKADGAILVDFWAEWCGPAKMIAPIL---DEIADEYQGKLTVAKLNIDQNP--GTAPKYGIRGIPTLL 99 (128)
T ss_dssp CTTTHHHHT---TTCSSEEEEEEECSSCHHHHHTHHHH---HHHHHHTTTTEEEEEEETTTCC--TTSGGGTCCSSSEEE
T ss_pred ChhhHHHHH---HhcCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHHcCCCccCEEE
Confidence 344565444 46789999999999999999887433 3455555557888888887543 577889999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++ . .| .++.+..|..+.++|.+.|...+
T Consensus 100 ~~-~-~G---~~~~~~~G~~~~~~l~~~l~~~l 127 (128)
T 2o8v_B 100 LF-K-NG---EVAATKVGALSKGQLKEFLDANL 127 (128)
T ss_dssp EE-E-TT---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred EE-e-CC---EEEEEEcCCCCHHHHHHHHHHhh
Confidence 88 3 23 45677889999988888776654
No 49
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=97.63 E-value=0.00039 Score=54.95 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
.|++++..+ .+|+++|++++++|..|..+...+ ..+.+-.. ++.+...|+++. ..++..|++..+|.+.++.
T Consensus 10 ~~~~~l~~~--~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 81 (105)
T 3m9j_A 10 AFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDC--QDVASESEVKSMPTFQFFK 81 (105)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTC--HHHHHHTTCCBSSEEEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhh--HHHHHHcCCCcCcEEEEEE
Confidence 355555433 589999999999999999888432 22333222 477888887643 4678899999999999984
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
. | .++.+..|. +++++.+.|...
T Consensus 82 ~--g---~~~~~~~g~-~~~~l~~~l~~~ 104 (105)
T 3m9j_A 82 K--G---QKVGEFSGA-NKEKLEATINEL 104 (105)
T ss_dssp T--T---EEEEEEESS-CHHHHHHHHHHH
T ss_pred C--C---eEEEEEeCC-CHHHHHHHHHHh
Confidence 3 2 456778898 888877776543
No 50
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=97.62 E-value=0.00029 Score=56.57 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=68.9
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
.+.+|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++. ..++..|++..+|.+.++. .| .+
T Consensus 20 ~~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~--~G---~~ 89 (112)
T 1t00_A 20 LKNDKPVLVDFWAAWCGPCRQIAPSL---EAIAAEYGDKIEIVKLNIDEN--PGTAAKYGVMSIPTLNVYQ--GG---EV 89 (112)
T ss_dssp TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TT---EE
T ss_pred hhCCCeEEEEEECCCCHhHHhcCHHH---HHHHHHhcCCeEEEEEEcCCC--HHHHHhCCCCcccEEEEEe--CC---EE
Confidence 35689999999999999999887433 344444545688888888653 3578899999999987763 23 45
Q ss_pred eeeeecCCCHHHHHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~i 283 (412)
+.++.|..+.+.+.+.|...+
T Consensus 90 ~~~~~G~~~~~~l~~~l~~~l 110 (112)
T 1t00_A 90 AKTIVGAKPKAAIVRDLEDFI 110 (112)
T ss_dssp EEEEESCCCHHHHHHHTHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 678889999988888777654
No 51
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=97.62 E-value=0.0003 Score=55.47 Aligned_cols=96 Identities=7% Similarity=0.017 Sum_probs=70.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|.+.+ .+..|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++. ..++..|++..+|.+.++.
T Consensus 9 ~~~~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~ 80 (105)
T 1fb6_A 9 SWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVI---DELAKEYSGKIAVYKLNTDEA--PGIATQYNIRSIPTVLFFK 80 (105)
T ss_dssp THHHHT---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE
T ss_pred hHHHHH---hcCCCcEEEEEECCCChHHHHHHHHH---HHHHHHhcCceEEEEEcCcch--HHHHHhCCCCcccEEEEEe
Confidence 455443 34589999999999999999988543 455555556788888887643 4578899999999987763
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
.| .++.++.|..+.+.+...|...
T Consensus 81 --~g---~~~~~~~G~~~~~~l~~~l~~~ 104 (105)
T 1fb6_A 81 --NG---ERKESIIGAVPKSTLTDSIEKY 104 (105)
T ss_dssp --TT---EEEEEEEECCCHHHHHHHHHHH
T ss_pred --CC---eEEEEEecCCCHHHHHHHHHhh
Confidence 22 4567788999988887776543
No 52
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=97.59 E-value=0.00051 Score=54.22 Aligned_cols=95 Identities=9% Similarity=0.098 Sum_probs=68.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
.|.+++.. ...|+++|++++++|..|..+...+ ..+.+-+..++.+...|+++. ..++..|++..+|.+.++.
T Consensus 10 ~~~~~l~~--~~~~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~~ 82 (106)
T 1xwb_A 10 DLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKL---VELSTQFADNVVVLKVDVDEC--EDIAMEYNISSMPTFVFLK 82 (106)
T ss_dssp HHHHHHHH--HTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--HHHHHHTTCCSSSEEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCcCHHHHHhhHHH---HHHHHHhCCCeEEEEEeccch--HHHHHHcCCCcccEEEEEc
Confidence 45555543 3689999999999999999888433 345554545788888888643 4578899999999977663
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.| .++.+..| .+++++.+.|..
T Consensus 83 --~G---~~~~~~~g-~~~~~l~~~i~~ 104 (106)
T 1xwb_A 83 --NG---VKVEEFAG-ANAKRLEDVIKA 104 (106)
T ss_dssp --TT---EEEEEEES-CCHHHHHHHHHH
T ss_pred --CC---cEEEEEcC-CCHHHHHHHHHH
Confidence 22 45677889 677776665543
No 53
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=97.59 E-value=0.00043 Score=55.95 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.+|++++ +.+|+++|++++++|..|..+...+ ..+.+-.. ++.+...|+++. ..++..|++..+|.+.++
T Consensus 17 ~~f~~~~----~~~k~vlv~f~a~~C~~C~~~~~~l---~~l~~~~~-~v~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 86 (112)
T 1syr_A 17 AEFDSII----SQNELVIVDFFAEWCGPCKRIAPFY---EECSKTYT-KMVFIKVDVDEV--SEVTEKENITSMPTFKVY 86 (112)
T ss_dssp HHHHHHH----HHCSEEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTT--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHH----ccCCeEEEEEECCCCHHHHHHHHHH---HHHHHHcC-CCEEEEEECCCC--HHHHHHcCCCcccEEEEE
Confidence 3455555 3789999999999999999888433 23333222 688888888754 367889999999997766
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
. .| .++.+..|. +.++|.+.|..
T Consensus 87 ~--~G---~~~~~~~G~-~~~~l~~~l~~ 109 (112)
T 1syr_A 87 K--NG---SSVDTLLGA-NDSALKQLIEK 109 (112)
T ss_dssp E--TT---EEEEEEESC-CHHHHHHHHHT
T ss_pred E--CC---cEEEEEeCC-CHHHHHHHHHH
Confidence 3 23 456678898 88877766654
No 54
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=97.57 E-value=0.0002 Score=57.30 Aligned_cols=86 Identities=6% Similarity=0.022 Sum_probs=59.8
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
++.|+++|++++++|..|..+. +.+.++.++ ++.+...|++... .++..|++..+|.+.++.. | .
T Consensus 16 ~~~~~vlv~f~a~wC~~C~~~~------p~~~~~~~~~~~~~~~~vd~~~~~--~l~~~~~v~~~Pt~~~~~~--G---~ 82 (105)
T 4euy_A 16 EEQQLVLLFIKTENCGVCDVML------RKVNYVLENYNYVEKIEILLQDMQ--EIAGRYAVFTGPTVLLFYN--G---K 82 (105)
T ss_dssp TCSSEEEEEEEESSCHHHHHHH------HHHHHHHHTCTTEEEEEEEECCC-----------CCCCEEEEEET--T---E
T ss_pred hcCCCEEEEEeCCCCcchHHHH------HHHHHHHHHcCCceEEEEECCCCH--HHHHhcCCCCCCEEEEEeC--C---e
Confidence 5789999999999999999887 334444443 6888888887543 6788899999999998852 3 4
Q ss_pred eeeeeecCCCHHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~ 282 (412)
++.++.|..+.++|.+.|...
T Consensus 83 ~~~~~~g~~~~~~l~~~l~~~ 103 (105)
T 4euy_A 83 EILRESRFISLENLERTIQLF 103 (105)
T ss_dssp EEEEEESSCCHHHHHHHHHTT
T ss_pred EEEEEeCCcCHHHHHHHHHHh
Confidence 677888999999888777644
No 55
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0005 Score=56.85 Aligned_cols=93 Identities=6% Similarity=0.017 Sum_probs=72.9
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
.+..|+++|++++++|..|..+...+ ..+.+-+. .++.+...|++.. ..++..|++..+|.+.++.. +
T Consensus 22 ~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~--g- 93 (133)
T 1x5d_A 22 LDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVN--QVLASRYGIRGFPTIKIFQK--G- 93 (133)
T ss_dssp TTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTC--CHHHHHHTCCSSSEEEEEET--T-
T ss_pred hcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCC--HHHHHhCCCCeeCeEEEEeC--C-
Confidence 34679999999999999999888544 35555555 5788888888643 35778899999999999976 3
Q ss_pred cceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.++.+..|..+.+.|...|...+..
T Consensus 94 --~~~~~~~G~~~~~~l~~~l~~~~~~ 118 (133)
T 1x5d_A 94 --ESPVDYDGGRTRSDIVSRALDLFSD 118 (133)
T ss_dssp --EEEEEECSCCSHHHHHHHHHHHHHH
T ss_pred --CceEEecCCCCHHHHHHHHHHHhhc
Confidence 2566788999999998888877754
No 56
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=97.57 E-value=0.00064 Score=55.47 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=72.8
Q ss_pred HHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcc
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQR 259 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~ 259 (412)
....+..|+++|++++++|..|..+...+ ..+.+.+..++.+...|+.+.. .++..|++..+|.+.++... +.
T Consensus 15 ~~~~~~~~~~lv~f~a~~C~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~~-~~- 87 (122)
T 3aps_A 15 EKVLQGKTHWVVDFYAPWCGPCQNFAPEF---ELLARMIKGKVRAGKVDCQAYP--QTCQKAGIKAYPSVKLYQYE-RA- 87 (122)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTCH--HHHHHTTCCSSSEEEEEEEE-GG-
T ss_pred HHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEeCcCCH--HHHHHcCCCccceEEEEeCC-Cc-
Confidence 44556789999999999999999988543 4566666668889888887543 57888999999999998652 21
Q ss_pred ceeeeeeecC----CCHHHHHHHHHHHHHhhh
Q 015165 260 IALLQQVEGP----KSPEEMLMILQKVIEESN 287 (412)
Q Consensus 260 ~~vl~ri~G~----~s~~~ll~~L~~~ie~~~ 287 (412)
+.++.|. .+++.|.+.|...++...
T Consensus 88 ---~~~~~g~~~~~~~~~~l~~~l~~~l~~~~ 116 (122)
T 3aps_A 88 ---KKSIWEEQINSRDAKTIAALIYGKLETLQ 116 (122)
T ss_dssp ---GTEEEEEEECCSCHHHHHHHHHHHHHCC-
T ss_pred ---cceeeccccCcCCHHHHHHHHHHHHHhhh
Confidence 2334454 789999888888776543
No 57
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=97.56 E-value=0.00043 Score=56.97 Aligned_cols=92 Identities=7% Similarity=0.045 Sum_probs=66.4
Q ss_pred HHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
+.+.+..|+++|++++++|..|..+...+ ..+.+-+.. ++.+...|+++. ..++..|++..+|.+.++. .|
T Consensus 27 ~~~l~~~k~vvv~f~a~~C~~C~~~~~~l---~~l~~~~~~~~v~~~~vd~d~~--~~~~~~~~v~~~Pt~~~~~--~G- 98 (121)
T 2j23_A 27 KQVTGGDKVVVIDFWATWCGPCKMIGPVF---EKISDTPAGDKVGFYKVDVDEQ--SQIAQEVGIRAMPTFVFFK--NG- 98 (121)
T ss_dssp HHHHSSSSCEEEEEECTTCSTHHHHHHHH---HHHHTSTHHHHSEEEEEETTTC--HHHHHHHTCCSSSEEEEEE--TT-
T ss_pred HHHHcCCCEEEEEEECCCCHhHHHHHHHH---HHHHHHCcCCcEEEEEEECcCC--HHHHHHcCCCcccEEEEEE--CC-
Confidence 33337789999999999999999988433 233333333 488888888753 3577889999999988774 22
Q ss_pred cceeeeeeecCCCHHHHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
.++.+..|. ++++|.+.|...
T Consensus 99 --~~~~~~~G~-~~~~l~~~l~~~ 119 (121)
T 2j23_A 99 --QKIDTVVGA-DPSKLQAAITQH 119 (121)
T ss_dssp --EEEEEEESS-CHHHHHHHHHHH
T ss_pred --eEEeeEcCC-CHHHHHHHHHHh
Confidence 456678898 888777666543
No 58
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=97.55 E-value=0.00061 Score=55.00 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=65.3
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeC
Q 015165 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 177 eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
+-++.+.++.|+++|++++++|..|..+.. .+.++.+. ++.+...|++. ...++..|++..+|.+.++..
T Consensus 15 ~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p------~l~~l~~~~~~~~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~ 86 (109)
T 3f3q_A 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAP------MIEKFSEQYPQADFYKLDVDE--LGDVAQKNEVSAMPTLLLFKN 86 (109)
T ss_dssp HHHHHHTTSSSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTT--CHHHHHHTTCCSSSEEEEEET
T ss_pred HHHHHHHhcCCEEEEEEECCcCHhHHHHHH------HHHHHHHHCCCCEEEEEECCC--CHHHHHHcCCCccCEEEEEEC
Confidence 344556677999999999999999998883 33444332 46677777754 345788999999999988862
Q ss_pred CCCccceeeeeeecCCCHHHHHHHHH
Q 015165 255 AANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
| .++.++.|. ++++|.+.|.
T Consensus 87 --G---~~~~~~~G~-~~~~l~~~i~ 106 (109)
T 3f3q_A 87 --G---KEVAKVVGA-NPAAIKQAIA 106 (109)
T ss_dssp --T---EEEEEEESS-CHHHHHHHHH
T ss_pred --C---EEEEEEeCC-CHHHHHHHHH
Confidence 2 467788898 6666665554
No 59
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=97.54 E-value=0.0011 Score=52.77 Aligned_cols=95 Identities=8% Similarity=0.120 Sum_probs=72.0
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc------CeEEEecccCChhHHHHHhhCC
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE------NFVSWGGSIRASEGFKMSNSLK 242 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~------nfV~w~~dv~~~Eg~~va~~l~ 242 (412)
.+-..+|.+++. .|+++|++++++|..|..+. +.+.++.+. ++.+...|+.+. ..++..|+
T Consensus 9 ~l~~~~~~~~~~-----~~~~lv~f~~~~C~~C~~~~------~~~~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~ 75 (111)
T 3uvt_A 9 ALTENNFDDTIA-----EGITFIKFYAPWCGHCKTLA------PTWEELSKKEFPGLAGVKIAEVDCTAE--RNICSKYS 75 (111)
T ss_dssp ECCTTTHHHHHH-----SSEEEEEEECSSCHHHHHHH------HHHHHHHTCCCCC-CCEEEEEEETTTC--HHHHHHTT
T ss_pred EcChhhHHHHhc-----CCcEEEEEECCCChhHHHhh------HHHHHHHHHhhccCCceEEEEEecccc--HhHHHhcC
Confidence 445567888776 78999999999999999887 455555543 577778887643 45788999
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+..+|.+.++.. | .++.+..|..+.+.|.+.|..
T Consensus 76 v~~~Pt~~~~~~--g---~~~~~~~g~~~~~~l~~~l~~ 109 (111)
T 3uvt_A 76 VRGYPTLLLFRG--G---KKVSEHSGGRDLDSLHRFVLS 109 (111)
T ss_dssp CCSSSEEEEEET--T---EEEEEECSCCSHHHHHHHHHH
T ss_pred CCcccEEEEEeC--C---cEEEeccCCcCHHHHHHHHHh
Confidence 999999888732 2 456778899999888877653
No 60
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=97.47 E-value=0.00025 Score=62.15 Aligned_cols=109 Identities=12% Similarity=0.105 Sum_probs=76.4
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCC--
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKA-- 243 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~-- 243 (412)
..| .+|+++++.+...+|+++|+++.++|..|..+.. +|.. +.++.. -+|+...+|....+ ++..|++
T Consensus 30 i~w--~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~--~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~ 101 (164)
T 1sen_A 30 IHW--RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAE--STEISELSHNFVMVNLEDEEEP---KDEDFSPDG 101 (164)
T ss_dssp SCB--CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHT--CHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTC
T ss_pred ccc--cCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHH--HHHHhhcCCeEEEEEecCCchH---HHHHhcccC
Confidence 455 6899999999999999999999999999999985 4433 233333 35555444433221 4455666
Q ss_pred CCCceEEEEeCCCCccceeeeeeecC----------CCHHHHHHHHHHHHHhhhH
Q 015165 244 SRYPFCAVVMPAANQRIALLQQVEGP----------KSPEEMLMILQKVIEESNP 288 (412)
Q Consensus 244 ~~~P~l~lI~~~~~~~~~vl~ri~G~----------~s~~~ll~~L~~~ie~~~~ 288 (412)
..+|.+.+++... .++.++.|. .++++|+..|...++...+
T Consensus 102 ~~~Pt~~~~d~~G----~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 152 (164)
T 1sen_A 102 GYIPRILFLDPSG----KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTG 152 (164)
T ss_dssp SCSSEEEEECTTS----CBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHHHHGG
T ss_pred CcCCeEEEECCCC----CEEEEEeCCCCccchhcccCCHHHHHHHHHHHHHhccH
Confidence 6699999997632 345556674 7889999999888766543
No 61
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=97.47 E-value=0.00014 Score=61.84 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh---------------------hHH
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS---------------------EGF 235 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~---------------------Eg~ 235 (412)
.+..+.-.+|+++|++++++|..|..+. +.+.++.++ ++.+++.++.+. +..
T Consensus 34 ~~~l~~~~gk~~ll~f~~~~C~~C~~~~------~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (156)
T 1kng_A 34 GLDPAAFKGKVSLVNVWASWCVPCHDEA------PLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANG 107 (156)
T ss_dssp CBCGGGGTTSCEEEEEECTTCHHHHHHH------HHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTS
T ss_pred eechHHhCCCEEEEEEEcccCHhHHHHH------HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchh
Confidence 3444444589999999999998887766 445555554 477777665432 223
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.+++.|++..+|.+++|++. ..++.+..|..+.+.+...|...+++
T Consensus 108 ~~~~~~~v~~~P~~~~id~~----G~i~~~~~g~~~~~~l~~~l~~~l~~ 153 (156)
T 1kng_A 108 RASIEWGVYGVPETFVVGRE----GTIVYKLVGPITPDNLRSVLLPQMEK 153 (156)
T ss_dssp HHHHHTTCCSSCEEEEECTT----SBEEEEEESCCCHHHHHHTHHHHHHH
T ss_pred HHHHhcCcCccCeEEEEcCC----CCEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999874 25677788999999888888776654
No 62
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=97.47 E-value=0.00065 Score=55.37 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=66.5
Q ss_pred CCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCC--hhHHHHHhhCC
Q 015165 168 PNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRA--SEGFKMSNSLK 242 (412)
Q Consensus 168 p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~--~Eg~~va~~l~ 242 (412)
..|-.-+..+ +..+.+.+|+++||+++++|..|..+.. .+.++.++ .+++...|... .+...++..|+
T Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~v~f~a~wC~~C~~~~p------~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 1zma_A 12 KDLEVTTVVR-AQEALDKKETATFFIGRKTCPYCRKFAG------TLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG 84 (118)
T ss_dssp TTSEECCHHH-HHHHHHTTCCEEEEEECTTCHHHHHHHH------HHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT
T ss_pred hhhhcCCHHH-HHHHHhCCCeEEEEEECCCCccHHHHHH------HHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcC
Confidence 4444444443 3334456789999999999999999883 34444432 44444333222 33456788999
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
+..+|.+.++.. | .++.++.|..+.++|.+.|
T Consensus 85 i~~~Pt~~~~~~--G---~~~~~~~G~~~~~~l~~~l 116 (118)
T 1zma_A 85 IPTVPGFVHITD--G---QINVRCDSSMSAQEIKDFA 116 (118)
T ss_dssp CCSSCEEEEEET--T---EEEEECCTTCCHHHHHHHH
T ss_pred CCCCCeEEEEEC--C---EEEEEecCCCCHHHHHHHh
Confidence 999999988742 3 4567788999988876655
No 63
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=97.45 E-value=0.0009 Score=55.77 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=68.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|.+++ ...|+++|++++++|..|..+...+ ..+.+-. .++.+...|+++. ..++..|++..+|.+.++
T Consensus 29 ~f~~~~----~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~-~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~i~- 97 (125)
T 1r26_A 29 QFRNIM----SEDILTVAWFTAVWCGPCKTIERPM---EKIAYEF-PTVKFAKVDADNN--SEIVSKCRVLQLPTFIIA- 97 (125)
T ss_dssp HHHHHH----HSSSCEEEEEECTTCHHHHHTHHHH---HHHHHHC-TTSEEEEEETTTC--HHHHHHTTCCSSSEEEEE-
T ss_pred HHHHHH----ccCCEEEEEEECCcCHhHHHHHHHH---HHHHHHC-CCCEEEEEECCCC--HHHHHHcCCCcccEEEEE-
Confidence 455555 6789999999999999999887432 2233222 3688888888643 457889999999997776
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
. .| .++.++.| .++++|...|...+.
T Consensus 98 ~-~G---~~~~~~~G-~~~~~l~~~l~~~l~ 123 (125)
T 1r26_A 98 R-SG---KMLGHVIG-ANPGMLRQKLRDIIK 123 (125)
T ss_dssp E-TT---EEEEEEES-SCHHHHHHHHHHHHH
T ss_pred e-CC---eEEEEEeC-CCHHHHHHHHHHHhc
Confidence 3 23 45677889 688887777766654
No 64
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=97.45 E-value=0.0005 Score=55.85 Aligned_cols=91 Identities=11% Similarity=0.047 Sum_probs=69.1
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccc
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRI 260 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~ 260 (412)
.+.+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+.+. ..++..|++..+|.+.++. .|
T Consensus 25 ~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~i~~~Pt~~~~~--~g--- 94 (121)
T 2i1u_A 25 DVLSSNKPVLVDFWATWCGPCKMVAPVL---EEIATERATDLTVAKLDVDTN--PETARNFQVVSIPTLILFK--DG--- 94 (121)
T ss_dssp HTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE--TT---
T ss_pred HHHhCCCcEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCeEEEEEECCCC--HHHHHhcCCCcCCEEEEEE--CC---
Confidence 3345689999999999999999998543 455555555788888888753 3578899999999988774 23
Q ss_pred eeeeeeecCCCHHHHHHHHHH
Q 015165 261 ALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 261 ~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.++.+..|..+.+.|.+.|..
T Consensus 95 ~~~~~~~G~~~~~~l~~~l~~ 115 (121)
T 2i1u_A 95 QPVKRIVGAKGKAALLRELSD 115 (121)
T ss_dssp EEEEEEESCCCHHHHHHHTCS
T ss_pred EEEEEecCCCCHHHHHHHHHH
Confidence 456778899998887766643
No 65
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=97.43 E-value=0.0009 Score=54.35 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.+|.+++.. ..+|+++|++++++|..|..+.. .+.++.++ ++.+...|++. ...++..|++..+|.+.+
T Consensus 22 ~~~~~~l~~--~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~ 91 (117)
T 2xc2_A 22 GDLESLLEQ--HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDK--LEETARKYNISAMPTFIA 91 (117)
T ss_dssp THHHHHHHH--TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTT--SHHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCc--cHHHHHHcCCCccceEEE
Confidence 566676653 36899999999999999998873 34444444 67888888764 346788999999999777
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+. .| .++.++.| .+++++.+.|..
T Consensus 92 ~~--~G---~~~~~~~G-~~~~~l~~~l~~ 115 (117)
T 2xc2_A 92 IK--NG---EKVGDVVG-ASIAKVEDMIKK 115 (117)
T ss_dssp EE--TT---EEEEEEES-SCHHHHHHHHHH
T ss_pred Ee--CC---cEEEEEeC-CCHHHHHHHHHH
Confidence 63 22 45677889 577776666654
No 66
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.40 E-value=0.00032 Score=59.41 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=68.3
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccC--Ch-------------------hHHHHHhh
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIR--AS-------------------EGFKMSNS 240 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~--~~-------------------Eg~~va~~ 240 (412)
.-.+|+++|++.+++|..|..+...+ ..+.+-+. .++.+.+.++. +. ....++..
T Consensus 25 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 101 (153)
T 2l5o_A 25 DLQGKVTLINFWFPSCPGCVSEMPKI---IKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQA 101 (153)
T ss_dssp HHTTCEEEEEEECTTCTTHHHHHHHH---HHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHH
T ss_pred HhCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHH
Confidence 34689999999999999998877432 12333333 35666655432 21 12356788
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
|++..+|.+.+|++.+ .++.+..|..+.+++...|...+...
T Consensus 102 ~~i~~~P~~~lid~~G----~i~~~~~g~~~~~~l~~~l~~ll~~~ 143 (153)
T 2l5o_A 102 FGTQVYPTSVLIGKKG----EILKTYVGEPDFGKLYQEIDTAWRNS 143 (153)
T ss_dssp HTCCSSSEEEEECSSS----CCCEEEESSCCHHHHHHHHHHHHHCC
T ss_pred cCCCccCeEEEECCCC----cEEEEEcCCCCHHHHHHHHHHHHHhh
Confidence 9999999999998742 45667789999999999998877654
No 67
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=97.40 E-value=0.00061 Score=56.88 Aligned_cols=100 Identities=8% Similarity=-0.017 Sum_probs=70.8
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC-------------------------hh
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-------------------------SE 233 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~-------------------------~E 233 (412)
+..+.-.+|+++|++.+++|..|..+...+ ..+.+-+.+++.+.+.+++. ..
T Consensus 22 ~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 98 (148)
T 2b5x_A 22 TREQLIGEKPTLIHFWSISCHLCKEAMPQV---NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDS 98 (148)
T ss_dssp CHHHHTTTSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECS
T ss_pred cchhhcCCCEEEEEEEcCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECC
Confidence 334445679999999999998888776332 23343333447777776643 22
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 234 GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 234 g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
...++..|++..+|.+++|++. ..++.+..|..+.+++.+.|...++.
T Consensus 99 ~~~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~l~~ 146 (148)
T 2b5x_A 99 DHALTDAFENEYVPAYYVFDKT----GQLRHFQAGGSGMKMLEKRVNRVLAE 146 (148)
T ss_dssp SCHHHHHTCCCCSSEEEEECTT----CBEEEEEESCSTTHHHHHHHHHHHTT
T ss_pred chhHHHHhCCCCCCEEEEECCC----CcEEEEecCCCCHHHHHHHHHHHHhc
Confidence 3467888999999999999874 25677788988989988888777653
No 68
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=97.39 E-value=0.0014 Score=52.26 Aligned_cols=96 Identities=9% Similarity=0.022 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
..|.+++.. ...|+++|++++++|..|..+...+ +.+.+-. .++.+...|++.. ..++..|++..+|.+.++
T Consensus 10 ~~~~~~~~~--~~~~~v~v~f~a~wC~~C~~~~~~~---~~~~~~~-~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~ 81 (107)
T 1gh2_A 10 PDFQPELSG--AGSRLAVVKFTMRGCGPCLRIAPAF---SSMSNKY-PQAVFLEVDVHQC--QGTAATNNISATPTFQFF 81 (107)
T ss_dssp GGHHHHHHH--TTTSCEEEEEECSSCHHHHHHHHHH---HHHHHHC-TTSEEEEEETTTS--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHh--CCCCEEEEEEECCCChhhHHHHHHH---HHHHHHC-CCcEEEEEECccC--HHHHHhcCCCcccEEEEE
Confidence 356666654 5689999999999999999887432 2233222 3688888888753 457889999999998887
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
. .| .++.++.|.. +++|.+.|...
T Consensus 82 ~--~G---~~~~~~~G~~-~~~l~~~l~~~ 105 (107)
T 1gh2_A 82 R--NK---VRIDQYQGAD-AVGLEEKIKQH 105 (107)
T ss_dssp E--TT---EEEEEEESSC-HHHHHHHHHHH
T ss_pred E--CC---eEEEEEeCCC-HHHHHHHHHHh
Confidence 3 23 4567788854 45565555543
No 69
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=97.39 E-value=0.0014 Score=51.40 Aligned_cols=91 Identities=7% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 175 FMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
|++++.. ..+|+++|++++++|..|..+... +.++.+. ++.+...|+++. ..++..|++..+|.+.++
T Consensus 10 ~~~~l~~--~~~~~~~v~f~~~~C~~C~~~~~~------l~~~~~~~~~~~~~~v~~~~~--~~~~~~~~v~~~Pt~~~~ 79 (104)
T 2vim_A 10 LEKLINE--NKGRLIVVDFFAQWCGPCRNIAPK------VEALAKEIPEVEFAKVDVDQN--EEAAAKYSVTAMPTFVFI 79 (104)
T ss_dssp HHHHHHT--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHh--cCCCeEEEEEECCCCHHHHHhhHH------HHHHHHHCCCCEEEEEeccCC--HHHHHHcCCccccEEEEE
Confidence 4454432 368999999999999999988843 3333332 688888888643 357889999999997776
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
. .| .++.+..| .++++|.+.|..
T Consensus 80 ~--~g---~~~~~~~G-~~~~~l~~~l~~ 102 (104)
T 2vim_A 80 K--DG---KEVDRFSG-ANETKLRETITR 102 (104)
T ss_dssp E--TT---EEEEEEES-SCHHHHHHHHHH
T ss_pred e--CC---cEEEEEeC-CCHHHHHHHHHh
Confidence 4 23 45677889 577776666654
No 70
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.39 E-value=0.0011 Score=55.44 Aligned_cols=99 Identities=12% Similarity=0.189 Sum_probs=72.9
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
-...|.+++ .+.|+++|++++++|..|..+...+ ..+.+-+.. ++.+...|+.+. ..++..|++..+|
T Consensus 23 ~~~~~~~~~----~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~P 93 (140)
T 2dj1_A 23 NDGNFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIASTLKDNDPPIAVAKIDATSA--SMLASKFDVSGYP 93 (140)
T ss_dssp CTTTHHHHH----TTCSEEEEEECCTTCHHHHTTHHHH---HHHHHHHHSSSSCCEEEEECTTTC--HHHHHHTTCCSSS
T ss_pred ChHhHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCceEEEEEeCccc--HHHHHHCCCCccC
Confidence 445676655 3579999999999999998887433 244444444 388888888654 5678899999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.+.++.. | + +.+..|..+.+.|...|...+.
T Consensus 94 t~~~~~~--G-~---~~~~~g~~~~~~l~~~l~~~~~ 124 (140)
T 2dj1_A 94 TIKILKK--G-Q---AVDYDGSRTQEEIVAKVREVSQ 124 (140)
T ss_dssp EEEEEET--T-E---EEECCSCCCHHHHHHHHHHHHS
T ss_pred eEEEEEC--C-c---EEEcCCCCCHHHHHHHHHHhcC
Confidence 9998832 3 2 3467799999998888877664
No 71
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=97.36 E-value=0.00089 Score=56.23 Aligned_cols=90 Identities=8% Similarity=-0.030 Sum_probs=68.6
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeee
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ 264 (412)
..|+++|++++++|..|..+...+ ..+.+-+..++.+...|++.. ..++..|++..+|.+.++... | .++
T Consensus 37 ~~k~~lv~f~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~~~-G---~~~- 106 (136)
T 2l5l_A 37 GDKPAIVDFYADWCGPCKMVAPIL---DELAKEYDGQIVIYKVDTEKE--QELAGAFGIRSIPSILFIPME-G---KPE- 106 (136)
T ss_dssp CSSCEEEEEECTTSHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--HHHHHHTTCCSSCEEEEECSS-S---CCE-
T ss_pred CCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCEEEEEEeCCCC--HHHHHHcCCCCCCEEEEECCC-C---cEE-
Confidence 578999999999999999988433 345555556788888888654 367889999999999998653 3 223
Q ss_pred eeecCCCHHHHHHHHHHHHH
Q 015165 265 QVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 265 ri~G~~s~~~ll~~L~~~ie 284 (412)
+..|..+.++|...|...+.
T Consensus 107 ~~~G~~~~~~l~~~l~~~~~ 126 (136)
T 2l5l_A 107 MAQGAMPKASFKKAIDEFLL 126 (136)
T ss_dssp EEESCCCHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHhh
Confidence 46799999888888776654
No 72
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=97.35 E-value=0.0012 Score=59.83 Aligned_cols=92 Identities=13% Similarity=0.103 Sum_probs=71.7
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
..+|+++|++++++|..|..+...+ ..+.+-+..++.+...|++.. ..++..|++..+|.+.++ . .| .++
T Consensus 112 ~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~-~-~G---~~~ 181 (210)
T 3apq_A 112 NSGELWFVNFYSPGCSHCHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIF-R-SG---MAA 181 (210)
T ss_dssp HHSCCEEEEEECTTCHHHHHHHHHH---HHHHHHTBTTBEEEEEETTTC--HHHHHHTTCCSSSEEEEE-C-TT---SCC
T ss_pred ccCCcEEEEEeCCCChhHHHHHHHH---HHHHHHhcCceEEEEEECCcc--HHHHHHcCCCcCCeEEEE-E-CC---Cce
Confidence 6789999999999999999988433 455555556788888888654 367889999999999888 3 23 336
Q ss_pred eeeecCCCHHHHHHHHHHHHHh
Q 015165 264 QQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 264 ~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.+..|..+.+.|.+.|...+..
T Consensus 182 ~~~~G~~~~~~l~~~i~~~l~~ 203 (210)
T 3apq_A 182 VKYNGDRSKESLVAFAMQHVRS 203 (210)
T ss_dssp EECCSCCCHHHHHHHHHHHHHC
T ss_pred eEecCCCCHHHHHHHHHHhCcc
Confidence 6788999999988888777654
No 73
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=97.34 E-value=0.0008 Score=56.98 Aligned_cols=98 Identities=8% Similarity=-0.009 Sum_probs=69.5
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChh--------------------HHHHHhhC
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE--------------------GFKMSNSL 241 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~E--------------------g~~va~~l 241 (412)
.-.+|+++|++.+++|..|..+...+ ..+.+-+. .++.+.+.++++.. ...++..|
T Consensus 23 ~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (151)
T 2f9s_A 23 DLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY 99 (151)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHT
T ss_pred HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhc
Confidence 34579999999999998777766332 12333333 36777777775432 23577889
Q ss_pred CCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 242 KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 242 ~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++..+|.++||++. ..++.+..|..+.+++...|...+....
T Consensus 100 ~v~~~P~~~lid~~----G~i~~~~~G~~~~~~l~~~l~~ll~~~~ 141 (151)
T 2f9s_A 100 DVSPLPTTFLINPE----GKVVKVVTGTMTESMIHDYMNLIKPGET 141 (151)
T ss_dssp TCCSSCEEEEECTT----SEEEEEEESCCCHHHHHHHHHHHSCC--
T ss_pred CCCCCCeEEEECCC----CcEEEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999874 3567778899999999888887775543
No 74
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=97.31 E-value=0.00077 Score=55.26 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=64.4
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCC---------------------hhHHHHHhh
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRA---------------------SEGFKMSNS 240 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~---------------------~Eg~~va~~ 240 (412)
-.+|+++|++++++|..|..+.. .+.++.++ ++.+...++.+ .....++..
T Consensus 23 ~~~k~~ll~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 23 LLGKPAVLWFWAPWCPTCQGEAP------VVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred hCCCeEEEEEEcCCChhHHHHHH------HHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 35789999999999988887763 33343332 67777777654 123456788
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
|++..+|.+.+|++. | .++ +..|..+.+++...|...+
T Consensus 97 ~~i~~~P~~~~id~~-g---~i~-~~~g~~~~~~l~~~l~~~l 134 (136)
T 1zzo_A 97 FGVTQQPAYAFVDPH-G---NVD-VVRGRMSQDELTRRVTALT 134 (136)
T ss_dssp TTCCSSSEEEEECTT-C---CEE-EEESCCCHHHHHHHHHHHC
T ss_pred cCCCCCceEEEECCC-C---CEE-EEecCCCHHHHHHHHHHHh
Confidence 999999999999874 2 355 7789999988888877654
No 75
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=97.30 E-value=0.0018 Score=52.77 Aligned_cols=90 Identities=8% Similarity=0.072 Sum_probs=64.6
Q ss_pred HHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 176 MDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
.+.++.+.+.+|+++|++++++|..|..+.. .+.++.++ ++.+...|+++. ..++..|++..+|.+.++
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p------~l~~~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~- 90 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQP------HLTKLIQAYPDVRFVKCDVDES--PDIAKECEVTAMPTFVLG- 90 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHH------HHHHHHHHCTTSEEEEEETTTC--HHHHHHTTCCSBSEEEEE-
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHCCCCEEEEEECCCC--HHHHHHCCCCcccEEEEE-
Confidence 4445556667899999999999999998873 33344332 477888888653 357889999999998776
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
. .| .++.++.|.. +++|.+.|
T Consensus 91 ~-~G---~~~~~~~G~~-~~~l~~~l 111 (114)
T 2oe3_A 91 K-DG---QLIGKIIGAN-PTALEKGI 111 (114)
T ss_dssp E-TT---EEEEEEESSC-HHHHHHHH
T ss_pred e-CC---eEEEEEeCCC-HHHHHHHH
Confidence 3 22 4667788987 77665554
No 76
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=97.29 E-value=0.00012 Score=60.47 Aligned_cols=98 Identities=10% Similarity=0.151 Sum_probs=72.2
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
..|.+++..++..+|+++|++++++|..|..+.. .+.++.++ ++.+...|+++. ..++..|++..+|.+.
T Consensus 23 ~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~------~l~~~~~~~~~v~~~~v~~~~~--~~~~~~~~v~~~Pt~~ 94 (130)
T 1wmj_A 23 DEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAP------VFAEYAKKFPGAVFLKVDVDEL--KEVAEKYNVEAMPTFL 94 (130)
T ss_dssp HHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHH------HHHHHHHHCTTBCCEECCTTTS--GGGHHHHTCCSSCCCC
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHH------HHHHHHHHCCCCEEEEEeccch--HHHHHHcCCCccceEE
Confidence 5589999999999999999999999999998773 34444443 677778887643 3578889999999977
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
++ . .| .++.++.| .+++++...|...+.
T Consensus 95 ~~-~-~g---~~~~~~~g-~~~~~l~~~l~~~~~ 122 (130)
T 1wmj_A 95 FI-K-DG---AEADKVVG-ARKDDLQNTIVKHVG 122 (130)
T ss_dssp BC-T-TT---TCCBCCCT-TCTTTHHHHHHHHTS
T ss_pred EE-e-CC---eEEEEEeC-CCHHHHHHHHHHHHh
Confidence 66 3 23 34566778 467777766665543
No 77
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.28 E-value=5.6e-05 Score=62.61 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=28.0
Q ss_pred HHhhCCCCCCCC-CCceeEeecceecCCCCcccccccCC
Q 015165 374 KALSLGAEPEKG-PNVTQVIFFLIFFPLSSMIFPLTFLQ 411 (412)
Q Consensus 374 ~~~~lp~EP~~~-~~~~~v~~~~~RlP~G~ri~~~~~~~ 411 (412)
++..||+||+.+ .++++|. ||||||+|+ .|||..
T Consensus 8 ~~~~lp~EP~~~~~~~~~Iq---iRlpdG~r~-~rrF~~ 42 (109)
T 2cr5_A 8 EVPDLPEEPSETAEEVVTVA---LRCPNGRVL-RRRFFK 42 (109)
T ss_dssp CCCCCCCCCCSSCSSEEEEE---EECTTSCEE-EEEEES
T ss_pred ccccCCCCCCCCCCCcEEEE---EECCCCCEE-EEEeCC
Confidence 356899999875 6889999 999999998 567754
No 78
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=97.28 E-value=0.0017 Score=54.59 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=68.6
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|.+++. +..+ ++|++++++|..|..+...+ +.+.+.+..++.+...|+.+. ..++..|++..+|.+.+
T Consensus 40 ~~~~~~~~~---~~~~-vvv~f~~~~C~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 110 (140)
T 1v98_A 40 EKGFAQEVA---GAPL-TLVDFFAPWCGPCRLVSPIL---EELARDHAGRLKVVKVNVDEH--PGLAARYGVRSVPTLVL 110 (140)
T ss_dssp ------------CCCE-EEEEEECTTCHHHHHHHHHH---HHHHHHTTTTEEEEEEETTTC--HHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHHH---cCCC-EEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCCC--HHHHHHCCCCccCEEEE
Confidence 334444443 3445 99999999999999988443 355555555788888888754 35788999999999988
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+. .| .++.++.|..+.+.|.+.|...++
T Consensus 111 ~~--~G---~~~~~~~G~~~~~~l~~~i~~~l~ 138 (140)
T 1v98_A 111 FR--RG---APVATWVGASPRRVLEERLRPYLE 138 (140)
T ss_dssp EE--TT---EEEEEEESCCCHHHHHHHHHHHHT
T ss_pred Ee--CC---cEEEEEeCCCCHHHHHHHHHHHHc
Confidence 83 23 456778899998888888876653
No 79
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=97.27 E-value=0.00034 Score=58.61 Aligned_cols=95 Identities=7% Similarity=0.042 Sum_probs=66.5
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhH----------HH-------------H
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEG----------FK-------------M 237 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg----------~~-------------v 237 (412)
+.-.+|+++|++++++|..|..+...+ ..+.+-+.+ ++.+.+.++++... +. +
T Consensus 27 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 103 (148)
T 3hcz_A 27 YDVQAKYTILFFWDSQCGHCQQETPKL---YDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDF 103 (148)
T ss_dssp GGCCCSEEEEEEECGGGCTTCSHHHHH---HHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCH
T ss_pred HHcCCCEEEEEEECCCCccHHHHHHHH---HHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhH
Confidence 334689999999999999988777322 123333333 58888887774322 11 7
Q ss_pred HhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+..|++..+|.+.+|++. ..++.+..|..+.++++..|...+
T Consensus 104 ~~~~~i~~~P~~~lid~~----G~i~~~~~g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 104 KITYDIYATPVLYVLDKN----KVIIAKRIGYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHHHCCCSSCEEEEECTT----CBEEEESCCGGGHHHHHHHHHHHH
T ss_pred HHhcCcCCCCEEEEECCC----CcEEEecCCHHHHHHHHHHHHHHh
Confidence 788999999999999874 246667778777777777776554
No 80
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=97.26 E-value=0.0022 Score=52.39 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
..+|.+.+.. ..+|+++|++++++|..|..+... +.++.++ ++.+...|+.+ +...++..|++..+|.+
T Consensus 25 ~~~~~~~~~~--~~~~~~vv~f~a~wC~~C~~~~~~------l~~~~~~~~~~~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 95 (124)
T 1faa_A 25 KDTFWPIVKA--AGDKPVVLDMFTQWCGPCKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 95 (124)
T ss_dssp TTTHHHHHHH--TTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSSSSEE
T ss_pred chhHHHHHHh--cCCCEEEEEEECCcCHhHHHHhHH------HHHHHHHCCCCEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 3567666653 367899999999999999988843 3333332 57888888763 34567889999999996
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.+. . .| .++.++.|.. ++++.+.|..
T Consensus 96 ~~~-~-~G---~~~~~~~G~~-~~~l~~~i~~ 121 (124)
T 1faa_A 96 KIL-K-EN---SVVGEVTGAK-YDKLLEAIQA 121 (124)
T ss_dssp EEE-E-TT---EEEEEEESSC-HHHHHHHHHH
T ss_pred EEE-e-CC---cEEEEEcCCC-HHHHHHHHHH
Confidence 655 3 22 4667788875 7776666654
No 81
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.25 E-value=0.0009 Score=55.08 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=64.4
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCCh--------------------hHHHHHhhC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRAS--------------------EGFKMSNSL 241 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~--------------------Eg~~va~~l 241 (412)
-.+|+++|++++++|..|..+.. .+.++.++ ++.+++.++.+. ....+++.|
T Consensus 22 ~~~k~~lv~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 22 LQGKPAVLWFWTPWCPFCNAEAP------SLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp GTTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred hCCCEEEEEEECCcChhHHHHHH------HHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 35789999999999988877663 34444333 677777777652 134577889
Q ss_pred CCCCCceEEEEeCCCCccceeeeeee---cCCCHHHHHHHHHHHH
Q 015165 242 KASRYPFCAVVMPAANQRIALLQQVE---GPKSPEEMLMILQKVI 283 (412)
Q Consensus 242 ~~~~~P~l~lI~~~~~~~~~vl~ri~---G~~s~~~ll~~L~~~i 283 (412)
++..+|.+.+|++. | .++ +.. |..+++++.+.|...+
T Consensus 96 ~i~~~P~~~lid~~-G---~i~-~~~~~~g~~~~~~l~~~l~~ll 135 (136)
T 1lu4_A 96 NVPWQPAFVFYRAD-G---TST-FVNNPTAAMSQDELSGRVAALT 135 (136)
T ss_dssp TCCSSSEEEEECTT-S---CEE-EECCSSSCCCHHHHHHHHHHC-
T ss_pred CCCCCCEEEEECCC-C---cEE-EEEcCCCccCHHHHHHHHHHHh
Confidence 99999999999874 2 355 777 9899988888776543
No 82
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=97.25 E-value=0.00026 Score=62.45 Aligned_cols=112 Identities=13% Similarity=0.098 Sum_probs=79.1
Q ss_pred hCCCCCCC----ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChh-----
Q 015165 163 YGNVKPNF----VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASE----- 233 (412)
Q Consensus 163 yg~~~p~F----~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~E----- 233 (412)
-|...|.| ..|. ...+..+.-.+|+++|++.+++|..|.... +.+.++.++++.+++.++++..
T Consensus 32 ~G~~~P~f~l~~~~g~-~~~~~l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~ 104 (176)
T 3kh7_A 32 IGKPFPAFDLPSVQDP-ARRLTEADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIK 104 (176)
T ss_dssp TTSBCCCCEEEBSSCT-TSEEEGGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHH
T ss_pred cCCcCCCcEecccCCC-CceecHHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHH
Confidence 35556666 2221 022334445589999999999988877665 5677777777877777753322
Q ss_pred ----------------HHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 234 ----------------GFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 234 ----------------g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
...++..|++..+|.++||++. ..++.+..|..+.+.+...|...+++
T Consensus 105 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 105 WLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQ----GIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp HHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTT----CBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred HHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCC----CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 2256678899999999999874 35677888999999988888877754
No 83
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=97.24 E-value=0.00068 Score=58.60 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=69.4
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh---------------------hHHHHHhhCC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS---------------------EGFKMSNSLK 242 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~---------------------Eg~~va~~l~ 242 (412)
..+|+++|++.+++|..|..+. +.+.++.++++.+++.++.+. +...++..|+
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEH------QYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 3689999999999998888766 456666666776766664321 2235677899
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
+..+|...+|++. ..++.+..|..+++.+...|...+++.
T Consensus 123 v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~l~~~ 162 (168)
T 2b1k_A 123 VYGAPETFLIDGN----GIIRYRHAGDLNPRVWEEEIKPLWEKY 162 (168)
T ss_dssp CCSSSEEEEECTT----SBEEEEEESCCCHHHHHHTTHHHHHHH
T ss_pred ccccCEEEEECCC----CeEEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999874 356777889999999888888777543
No 84
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=97.23 E-value=0.002 Score=54.62 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=68.9
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCChh----------------------HHHH
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASE----------------------GFKM 237 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~E----------------------g~~v 237 (412)
-.+|++||++..++|..|..+.. .+.++.+ .++.+.+.++++.+ ...+
T Consensus 22 ~~gk~vlv~F~a~wC~~C~~~~~------~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (151)
T 3raz_A 22 LKAPVRIVNLWATWCGPCRKEMP------AMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNF 95 (151)
T ss_dssp CCSSEEEEEEECTTCHHHHHHHH------HHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHH
Confidence 36899999999999988887763 3444332 36888888876443 3446
Q ss_pred HhhCC--CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 238 SNSLK--ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 238 a~~l~--~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+..|+ +..+|.+.||++. ..++.+..|..+.+++.+.|..+...
T Consensus 96 ~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~l~~~ 141 (151)
T 3raz_A 96 MKTYGNTVGVLPFTVVEAPK----CGYRQTITGEVNEKSLTDAVKLAHSK 141 (151)
T ss_dssp HHTTTCCSCCSSEEEEEETT----TTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred HHHhCCccCCCCEEEEECCC----CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 67788 8999999999974 24677888999999888888776644
No 85
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=97.23 E-value=0.0022 Score=54.99 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.|.+++..+ ..|+++|++++++|..|..+.. .+.++.+ .++.+...|+++. ..++..|++..+|.+.+
T Consensus 22 ~~~~~~~~~--~~~~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~ 91 (153)
T 2wz9_A 22 QFEELLRLK--AKSLLVVHFWAPWAPQCAQMNE------VMAELAKELPQVSFVKLEAEGV--PEVSEKYEISSVPTFLF 91 (153)
T ss_dssp HHHHHHHHT--TTSCEEEEEECTTCHHHHHHHH------HHHHHHHHCTTSEEEEEETTTS--HHHHHHTTCCSSSEEEE
T ss_pred HHHHHHHhc--CCCeEEEEEECCCCHhHHHHHH------HHHHHHHHcCCeEEEEEECCCC--HHHHHHcCCCCCCEEEE
Confidence 455555432 3899999999999999998873 3334433 3688888888753 35788999999999999
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+. . | .++.++.|. ++++|...|...+..
T Consensus 92 ~~-~-G---~~~~~~~G~-~~~~l~~~i~~~l~~ 119 (153)
T 2wz9_A 92 FK-N-S---QKIDRLDGA-HAPELTKKVQRHASS 119 (153)
T ss_dssp EE-T-T---EEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred EE-C-C---EEEEEEeCC-CHHHHHHHHHHHhcc
Confidence 87 2 3 456677885 677777777766543
No 86
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=97.23 E-value=0.0025 Score=51.30 Aligned_cols=87 Identities=15% Similarity=0.177 Sum_probs=63.9
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
.+.|.++|++++++|..|..+.. .+.++... ++.+...|+.. ...++..|++..+|.+.++ . .| .
T Consensus 17 ~~~~~~vv~f~a~wC~~C~~~~~------~l~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~-~-~G---~ 83 (110)
T 2l6c_A 17 EGLSDAIVFFHKNLCPHCKNMEK------VLDKFGARAPQVAISSVDSEA--RPELMKELGFERVPTLVFI-R-DG---K 83 (110)
T ss_dssp TTCSEEEEEEECSSCSTHHHHHH------HHHHHHTTCTTSCEEEEEGGG--CHHHHHHTTCCSSCEEEEE-E-SS---S
T ss_pred HcCCCEEEEEECCCCHhHHHHHH------HHHHHHHHCCCcEEEEEcCcC--CHHHHHHcCCcccCEEEEE-E-CC---E
Confidence 45689999999999999999863 33444333 56677777653 4457889999999999988 3 23 4
Q ss_pred eeeeeecCCCHHHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++.++.|..++++|...|....
T Consensus 84 ~v~~~~G~~~~~~l~~~~~~~~ 105 (110)
T 2l6c_A 84 VAKVFSGIMNPRELQALYASIH 105 (110)
T ss_dssp EEEEEESCCCHHHHHHHHHTC-
T ss_pred EEEEEcCCCCHHHHHHHHHHHh
Confidence 5778889999988777665443
No 87
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=97.22 E-value=0.0004 Score=57.72 Aligned_cols=97 Identities=9% Similarity=0.000 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCC--------------ChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHH
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHP--------------DTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKM 237 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~--------------~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~v 237 (412)
..+|.+.+ .+.+|+++|++++++|. .|..+... | +.+.+-+..++.+...|+++. ..+
T Consensus 10 ~~~f~~~~---~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~-~--~~l~~~~~~~~~~~~vd~d~~--~~l 81 (123)
T 1oaz_A 10 DDSFDTDV---LKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQN--PGT 81 (123)
T ss_dssp STTHHHHT---TSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHH-H--TTC-------CEEEEEETTSC--TTT
T ss_pred hhhHHHHH---HhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHH-H--HHHHHHhcCCeEEEEEECCCC--HHH
Confidence 34555443 46789999999999999 77766632 2 223333444688888888754 357
Q ss_pred HhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+..|++..+|.+.++ . .| .++.+..|..+.++|.+.|..
T Consensus 82 ~~~~~v~~~Pt~~~~-~-~G---~~~~~~~G~~~~~~l~~~l~~ 120 (123)
T 1oaz_A 82 APKYGIRGIPTLLLF-K-NG---EVAATKVGALSKGQLKEFLDA 120 (123)
T ss_dssp GGGGTCCBSSEEEEE-E-SS---SEEEEEESCCCHHHHHHHHTT
T ss_pred HHHcCCCccCEEEEE-E-CC---EEEEEEeCCCCHHHHHHHHHH
Confidence 889999999999988 3 23 456778899998888776653
No 88
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=97.18 E-value=0.0017 Score=52.03 Aligned_cols=96 Identities=14% Similarity=0.181 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
..+|.+++.. ..+|+++|++++++|..|..+... +.++.+. ++.+...|+++ +...++..|++..+|.+
T Consensus 12 ~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~------l~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~v~~~Pt~ 82 (111)
T 2pu9_C 12 KDTFWPIVKA--AGDKPVVLDMFTQWCGPSKAMAPK------YEKLAEEYLDVIFLKLDCNQ-ENKTLAKELGIRVVPTF 82 (111)
T ss_dssp TTTHHHHHTT--CTTSCEEEEEECTTCHHHHHHHHH------HHHHHHHCTTSEEEEEECSS-TTHHHHHHHCCSBSSEE
T ss_pred hHHHHHHHHh--cCCCEEEEEEECCcCHhHHHHCHH------HHHHHHHCCCeEEEEEecCc-chHHHHHHcCCCeeeEE
Confidence 3466666643 247899999999999999988743 3333332 58888888863 33467889999999995
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
. +.. .| .++.++.|.. +++|.+.|..+
T Consensus 83 ~-~~~-~G---~~~~~~~G~~-~~~l~~~l~~~ 109 (111)
T 2pu9_C 83 K-ILK-EN---SVVGEVTGAK-YDKLLEAIQAA 109 (111)
T ss_dssp E-EES-SS---SEEEEEESSC-HHHHHHHHHHH
T ss_pred E-EEe-CC---cEEEEEcCCC-HHHHHHHHHHh
Confidence 4 443 23 4566788874 77766666543
No 89
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=97.17 E-value=0.0023 Score=54.42 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=69.7
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhH-HHhhcCCChHHHHHHh----cCeEEEecccC-------ChhHH----------
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPA-FCEGTLCNEVLAAFVN----ENFVSWGGSIR-------ASEGF---------- 235 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~-F~r~vL~~~~v~~~l~----~nfV~w~~dv~-------~~Eg~---------- 235 (412)
.+..+.-.+|+++|++..++|..|.. .. +.+.++.+ .++.+.+.++. +.+.+
T Consensus 22 ~~~l~~~~gk~vlv~F~a~~C~~C~~e~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (160)
T 3lor_A 22 GLSNEDLRGKVVVVEVFQMLCPGCVNHGV------PQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIK 95 (160)
T ss_dssp CCCHHHHTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCC
T ss_pred ccCHHHhCCCEEEEEEEcCCCcchhhhhh------HHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCC
Confidence 34444456899999999999988876 24 33433333 35777777652 22211
Q ss_pred ---------------HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 236 ---------------KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 236 ---------------~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
.++..|++..+|.++||++. ..++.+..|..+.+++...|...+.+.
T Consensus 96 ~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll~~~ 157 (160)
T 3lor_A 96 FPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRK----GRIRQVQFGQVDDFVLGLLLGSLLSET 157 (160)
T ss_dssp SCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTT----SBEEEEEESCCCHHHHHHHHHHHHTCC
T ss_pred CcEEECCccccchhhhHHHhcccCccceEEEECCC----CcEEEEecCcCCHHHHHHHHHHHHhcc
Confidence 27888999999999999874 256778889999998888888777543
No 90
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=97.17 E-value=0.00045 Score=58.53 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=66.6
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh--hHH-------------------HHH
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS--EGF-------------------KMS 238 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~--Eg~-------------------~va 238 (412)
.+.-.+|+++|++.+++|..|......+ ..+.+-+.+ ++.+.+.+++.. +.+ .++
T Consensus 23 l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 99 (154)
T 3kcm_A 23 LSDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVG 99 (154)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHH
T ss_pred hhhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHH
Confidence 3444679999999999998888776433 233333333 677777777653 322 377
Q ss_pred hhCCCCCCceEEEEeCCCCccceeeeeeecCC--CHHHHHHHHHHHHHhhh
Q 015165 239 NSLKASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVIEESN 287 (412)
Q Consensus 239 ~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~--s~~~ll~~L~~~ie~~~ 287 (412)
..|++..+|.++||+.. ..++.++.|.. +.+++...|........
T Consensus 100 ~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~ 146 (154)
T 3kcm_A 100 KLYGTTGVPETFVIDRH----GVILKKVVGAMEWDHPEVIAFLNNELSKAR 146 (154)
T ss_dssp HHHTCCSBCEEEEECTT----SBEEEEEESCCCTTSHHHHHHHHTC-----
T ss_pred HHhCCCCCCeEEEECCC----CcEEEEEcCCCccccHHHHHHHHHHHHHhh
Confidence 88999999999999874 35677788876 56677777766555443
No 91
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=97.17 E-value=0.0021 Score=55.35 Aligned_cols=91 Identities=8% Similarity=0.085 Sum_probs=67.7
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceee
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALL 263 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl 263 (412)
...|+++|+++.++|..|..+...+ ..+.+-+..++.++..|+++ .-.++..|++..+|.+.+... | .++
T Consensus 21 ~~~k~vlv~F~a~WC~~C~~~~p~l---~~l~~~~~~~~~~~~vd~d~--~~~l~~~~~v~~~Pt~~~~~~--G---~~v 90 (149)
T 3gix_A 21 TAEKVLVLRFGRDEDPVCLQLDDIL---SKTSSDLSKMAAIYLVDVDQ--TAVYTQYFDISYIPSTVFFFN--G---QHM 90 (149)
T ss_dssp CCSSEEEEEEECTTSHHHHHHHHHH---HHHHTTTTTTEEEEEEETTT--CCHHHHHTTCCSSSEEEEEET--T---EEE
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHccCceEEEEEECCc--CHHHHHHcCCCccCeEEEEEC--C---eEE
Confidence 5689999999999999999887322 22333333458899999864 345788999999999985432 2 355
Q ss_pred ---------eeeec-CCCHHHHHHHHHHHHH
Q 015165 264 ---------QQVEG-PKSPEEMLMILQKVIE 284 (412)
Q Consensus 264 ---------~ri~G-~~s~~~ll~~L~~~ie 284 (412)
.++.| ..+.++|...|..++.
T Consensus 91 ~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~ 121 (149)
T 3gix_A 91 KVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR 121 (149)
T ss_dssp EEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred EeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence 67889 8899998888877653
No 92
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=97.17 E-value=0.0011 Score=55.16 Aligned_cols=88 Identities=7% Similarity=-0.063 Sum_probs=64.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCCh-----------------------hHHHHHhh
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS-----------------------EGFKMSNS 240 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~-----------------------Eg~~va~~ 240 (412)
.+|+++|++++++|..|..+...+ ..+.+-+. .++.+.+.++... ....++..
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 789999999999999888877332 22333333 3677777777531 13367889
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
|++..+|.+.+|++. ..++.+..|..+.++|...|
T Consensus 110 ~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 110 YHIITIPTSFLLNEK----GEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp TTCCEESEEEEECTT----CCEEEEEESCCCHHHHHHHH
T ss_pred cCcCccCeEEEEcCC----CcEEEEEcCCcCHHHHHHhh
Confidence 999999999999874 35677888999988877655
No 93
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=97.17 E-value=0.002 Score=54.30 Aligned_cols=94 Identities=5% Similarity=-0.078 Sum_probs=67.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhH---------------------HHHHhhCC
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEG---------------------FKMSNSLK 242 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg---------------------~~va~~l~ 242 (412)
.+|+++|++++++|..|..+...+ ..+.+-+. .++.+.+.+++.... ..++..|+
T Consensus 29 ~gk~~lv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 105 (152)
T 2lja_A 29 KGKYIYIDVWATWCGPCRGELPAL---KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL 105 (152)
T ss_dssp TTSEEEEEECCSSCCGGGGTHHHH---HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT
T ss_pred CCCEEEEEEECCcCHhHHHHhHHH---HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC
Confidence 479999999999999887666322 12332222 357777777765431 25778899
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+..+|.+.||.+. ..++.+..|..+.+++...|......
T Consensus 106 v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~~~~ 144 (152)
T 2lja_A 106 INGIPRFILLDRD----GKIISANMTRPSDPKTAEKFNELLGL 144 (152)
T ss_dssp CCSSCCEEEECTT----SCEEESSCCCTTCHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCC----CeEEEccCCCCCHHHHHHHHHHHhcc
Confidence 9999999999874 24677778888888888888776654
No 94
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=97.14 E-value=0.00086 Score=56.62 Aligned_cols=99 Identities=9% Similarity=0.009 Sum_probs=67.6
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCCh-hHH-------------------HH
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS-EGF-------------------KM 237 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~-Eg~-------------------~v 237 (412)
+..+.-.+|+++|++.+++|..|..+...+ ..+.+-+. .++.+.+.++... +.+ .+
T Consensus 21 ~~l~~~~gk~vll~f~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 97 (152)
T 3gl3_A 21 VKLSDKTGSVVYLDFWASWCGPCRQSFPWM---NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQT 97 (152)
T ss_dssp EEGGGGTTSEEEEEEECTTCTHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHH
T ss_pred EeHHHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchh
Confidence 334445689999999999999998887543 23333333 3577777777643 222 57
Q ss_pred HhhCCCCCCceEEEEeCCCCccceeeeeeecCCC--HHHHHHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQKVIE 284 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s--~~~ll~~L~~~ie 284 (412)
+..|++..+|.++||++. ..++.+..|..+ .+++...|.....
T Consensus 98 ~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~~~l~~~i~~~~~ 142 (152)
T 3gl3_A 98 PRLYGVKGMPTSFLIDRN----GKVLLQHVGFRPADKEALEQQILAALG 142 (152)
T ss_dssp HHHTTCCSSSEEEEECTT----SBEEEEEESCCTTTHHHHHHHHHHHTC
T ss_pred HHHcCCCCCCeEEEECCC----CCEEEEEccCCCcCHHHHHHHHHHHHc
Confidence 788999999999999874 356777778654 3566666655543
No 95
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=97.11 E-value=0.00085 Score=53.95 Aligned_cols=101 Identities=13% Similarity=0.128 Sum_probs=69.2
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCCCCCC
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRY 246 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~~ 246 (412)
+-..+|++++. ..|+++|++++++|..|..+...+ ..+.+-+. .++++...|+.+. ..++..|++..+
T Consensus 12 l~~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~ 82 (120)
T 1mek_A 12 LRKSNFAEALA----AHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEE--SDLAQQYGVRGY 82 (120)
T ss_dssp CCTTTHHHHHH----HCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTC--CSSHHHHTCCSS
T ss_pred echhhHHHHHc----cCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCC--HHHHHHCCCCcc
Confidence 34566777653 579999999999999999887433 23333333 2577777777643 257788999999
Q ss_pred ceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
|.+.++.. |..+ ...+..|..+.+.|.+.|...
T Consensus 83 Pt~~~~~~--g~~~-~~~~~~g~~~~~~l~~~l~~~ 115 (120)
T 1mek_A 83 PTIKFFRN--GDTA-SPKEYTAGREADDIVNWLKKR 115 (120)
T ss_dssp SEEEEEES--SCSS-SCEECCCCSSHHHHHHHHHTT
T ss_pred cEEEEEeC--CCcC-CcccccCccCHHHHHHHHHhc
Confidence 99999842 3211 114567888888887777543
No 96
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=97.10 E-value=0.0012 Score=55.43 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=67.7
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVV 252 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI 252 (412)
.|.+++.. ..+|+++|+++.++|..|..+. +.+.++.++ ++++...|++. ...++..|++..+|.+.++
T Consensus 30 ~~~~~l~~--~~~k~vvv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~ 99 (133)
T 3cxg_A 30 SLNQVFSS--TQNSSIVIKFGAVWCKPCNKIK------EYFKNQLNYYYVTLVDIDVDI--HPKLNDQHNIKALPTFEFY 99 (133)
T ss_dssp HHHHHHTC---CCSEEEEEEECTTCHHHHHTH------HHHHGGGGTEECEEEEEETTT--CHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCCCHHHHHHH------HHHHHHHHhcCEEEEEEeccc--hHHHHHhcCCCCCCEEEEE
Confidence 45555532 3478999999999999998864 333443333 56778888764 3467889999999999988
Q ss_pred eCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 253 MPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 253 ~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
....+ ...++.++.|. ++++|...|...+
T Consensus 100 ~~~~g-~g~~~~~~~G~-~~~~l~~~l~~~l 128 (133)
T 3cxg_A 100 FNLNN-EWVLVHTVEGA-NQNDIEKAFQKYC 128 (133)
T ss_dssp EEETT-EEEEEEEEESC-CHHHHHHHHHHHS
T ss_pred EecCC-CeEEEEEEcCC-CHHHHHHHHHHHH
Confidence 31112 23467788898 7888777776554
No 97
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=97.07 E-value=0.0026 Score=52.98 Aligned_cols=89 Identities=13% Similarity=0.141 Sum_probs=64.3
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hc-CeEEEecccCChh-----------------------HHHHHh
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NE-NFVSWGGSIRASE-----------------------GFKMSN 239 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~-nfV~w~~dv~~~E-----------------------g~~va~ 239 (412)
.+|+++|++++++|..|..+...+ ..+.+-+ .. ++.+.+.+++... ...++.
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAEL---KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHHH---HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 679999999999999999887433 2343333 33 5888888877654 447788
Q ss_pred hCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 240 ~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.|++..+|.+.+|++.+ .++.+.. +.+++...|...+
T Consensus 109 ~~~v~~~P~~~lid~~G----~i~~~~~---~~~~l~~~l~~ll 145 (148)
T 3fkf_A 109 QYAILTLPTNILLSPTG----KILARDI---QGEALTGKLKELL 145 (148)
T ss_dssp HTTCCSSSEEEEECTTS----BEEEESC---CHHHHHHHHHHHC
T ss_pred hcCCCCcCEEEEECCCC----eEEEecC---CHHHHHHHHHHHH
Confidence 99999999999998742 3444432 7777777776655
No 98
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.07 E-value=0.0019 Score=59.18 Aligned_cols=102 Identities=8% Similarity=-0.022 Sum_probs=76.7
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
-..+|.+.+ .+..|+++|++++++|..|..+...+ +.+.+-+..++.+...|+... ..++..|++..+|.+.
T Consensus 18 t~~~f~~~v---~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~--~~l~~~~~v~~~Pt~~ 89 (222)
T 3dxb_A 18 TDDSFDTDV---LKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQN--PGTAPKYGIRGIPTLL 89 (222)
T ss_dssp CTTTHHHHH---TTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTC--TTTGGGGTCCSBSEEE
T ss_pred CHHHHHHHH---HhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCC--HHHHHHcCCCcCCEEE
Confidence 445666654 45689999999999999999988433 455555555677877787643 3467889999999988
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
++.. | .++.++.|..+.+.|...|...+..
T Consensus 90 ~~~~--G---~~~~~~~G~~~~~~l~~~l~~~l~~ 119 (222)
T 3dxb_A 90 LFKN--G---EVAATKVGALSKGQLKEFLDANLAG 119 (222)
T ss_dssp EEET--T---EEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred EEEC--C---eEEEEeccccChHHHHHHHHhhccc
Confidence 8852 2 4567888999999999888877754
No 99
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=97.06 E-value=0.003 Score=53.02 Aligned_cols=87 Identities=9% Similarity=-0.071 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCC-------hhHHHHHhhCCCCCCceEEEEeCCCCcc
Q 015165 188 LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA-------SEGFKMSNSLKASRYPFCAVVMPAANQR 259 (412)
Q Consensus 188 ~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~-------~Eg~~va~~l~~~~~P~l~lI~~~~~~~ 259 (412)
+++|++++++|..|..+. +.+.++.++ ++.+...|+.+ .+...++..|++..+|.++++.. |
T Consensus 33 ~vlv~F~a~wC~~C~~~~------p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~--G-- 102 (135)
T 3emx_A 33 DAILAVYSKTCPHCHRDW------PQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKE--G-- 102 (135)
T ss_dssp SEEEEEEETTCHHHHHHH------HHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEET--T--
T ss_pred cEEEEEECCcCHhhhHhC------hhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcC--C--
Confidence 799999999999999887 555666554 46777777754 45667889999999998777762 3
Q ss_pred ceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 260 IALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 260 ~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.++.++.|..+.+.+...+...++.
T Consensus 103 -~~v~~~~G~~~~~~~~~~i~~~~~~ 127 (135)
T 3emx_A 103 -RIVDKLVGATPWSLKVEKAREIYGG 127 (135)
T ss_dssp -EEEEEEESCCCHHHHHHHHHHHC--
T ss_pred -EEEEEEeCCCCHHHHHHHHHHHhCC
Confidence 5677899999988777767666654
No 100
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=97.05 E-value=0.0025 Score=51.89 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=62.2
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC--------------------------hhHHHH
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--------------------------SEGFKM 237 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~--------------------------~Eg~~v 237 (412)
-.+|+++|++++++|..|......+ ..+.+-...++.+.+.+..+ .....+
T Consensus 20 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 96 (138)
T 4evm_A 20 YKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKL 96 (138)
T ss_dssp GTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHH
T ss_pred hCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHH
Confidence 3579999999999998887766432 23333333466666552211 112357
Q ss_pred HhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+..|++..+|.+.+|++. ..++.+..|..+.+++...|..
T Consensus 97 ~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~ 136 (138)
T 4evm_A 97 LETYGVRSYPTQAFIDKE----GKLVKTHPGFMEKDAILQTLKE 136 (138)
T ss_dssp HHHTTCCSSSEEEEECTT----CCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHcCcccCCeEEEECCC----CcEEEeecCCCcHHHHHHHHHh
Confidence 788999999999999874 2567778899998888777653
No 101
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=97.05 E-value=0.0009 Score=57.24 Aligned_cols=99 Identities=11% Similarity=0.067 Sum_probs=67.6
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCCh-hH-HHH-----------------HhhC
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRAS-EG-FKM-----------------SNSL 241 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~-Eg-~~v-----------------a~~l 241 (412)
+.-.+|+++|++.+++|..|..+...+ ..+.+-+.+ ++.+.+.++++. +. ... +..|
T Consensus 30 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (165)
T 3or5_A 30 ASLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAF 106 (165)
T ss_dssp GGGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHH
T ss_pred hHcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHH
Confidence 334679999999999999888887433 233333333 587877777653 22 122 2223
Q ss_pred ------CCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 242 ------KASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 242 ------~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++..+|.++||++. ..++.+..|..+.+++...|...+.+..
T Consensus 107 ~~~~~~~i~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~l~~~~ 154 (165)
T 3or5_A 107 NGYIDGGITGIPTSFVIDAS----GNVSGVIVGPRSKADFDRIVKMALGAKA 154 (165)
T ss_dssp HTTSTTCSCSSSEEEEECTT----SBEEEEECSCCCHHHHHHHHHHHHC---
T ss_pred hhhhccCCCCCCeEEEECCC----CcEEEEEcCCCCHHHHHHHHHHHHhhhc
Confidence 78999999999874 3567788899999999999988876543
No 102
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=96.11 E-value=9.1e-05 Score=58.34 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=65.4
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccce
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIA 261 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~ 261 (412)
+.+..|+++|++++++|..|..+...+ +.+.+.+..++.+...|+++ ...++..|++..+|.+.++ . .| .
T Consensus 15 ~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~v~~~Pt~~~~-~-~g---~ 84 (106)
T 2yj7_A 15 VLKSDKPVLVDFWAPWCGPCRMIAPII---EELAKEYEGKVKVVKVNVDE--NPNTAAQYGIRSIPTLLLF-K-NG---Q 84 (106)
Confidence 356789999999999999999887433 34555555567777777753 3467888999999999888 3 23 3
Q ss_pred eeeeeecCCCHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~ 281 (412)
++.+..|..+.+++.+.|..
T Consensus 85 ~~~~~~g~~~~~~l~~~l~~ 104 (106)
T 2yj7_A 85 VVDRLVGAQPKEALKERIDK 104 (106)
Confidence 45567788887777766654
No 103
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=97.02 E-value=0.0034 Score=58.07 Aligned_cols=108 Identities=12% Similarity=0.051 Sum_probs=79.4
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
..+|.+.+ .+..|+++|++++++|..|..|.-.+ ..+.+-+.. ++.+...|+...+...++..|++..+|.
T Consensus 19 ~~~f~~~i---~~~~~~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt 92 (244)
T 3q6o_A 19 ADTVRGAV---LGSRSAWAVEFFASWCGHCIAFAPTW---XALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT 92 (244)
T ss_dssp TTTHHHHH---SSCSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSE
T ss_pred hhhHHHHH---hhCCCeEEEEEECCcCHHHHHHHHHH---HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCE
Confidence 34555544 34569999999999999999998332 345555554 7889999998778889999999999999
Q ss_pred EEEEeCCCCc-cceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 249 CAVVMPAANQ-RIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 249 l~lI~~~~~~-~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
+.++...... ....+ +..| .+++.|...|...+..+.
T Consensus 93 ~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~~~~ 130 (244)
T 3q6o_A 93 VRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALESHH 130 (244)
T ss_dssp EEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHHTCT
T ss_pred EEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHHhcc
Confidence 9999852111 12233 5666 689999888888886643
No 104
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=96.99 E-value=0.0008 Score=45.05 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhh
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~ 42 (412)
+.+++|.+++++ |++. +.|+..|..++||++.|+...|
T Consensus 3 ~~~~~i~~L~~m-Gf~~-~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 3 GLNSKIAQLVSM-GFDP-LEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp CHHHHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHHHC
T ss_pred hHHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHC
Confidence 467899999999 9877 8999999999999999998654
No 105
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=96.93 E-value=0.014 Score=50.18 Aligned_cols=110 Identities=13% Similarity=0.092 Sum_probs=78.5
Q ss_pred HHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCC--CChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHH
Q 015165 159 FERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDH--PDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFK 236 (412)
Q Consensus 159 f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~--~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~ 236 (412)
+.++.|- +..-..+|++.+. +..+++||++..++| ..|..+. -+| +++.+-....+.++..|++ +.-.
T Consensus 11 l~~~~g~--~~vt~~~F~~~v~---~~~~~vlVdF~A~wCr~gpCk~ia-Pvl--eela~e~~~~v~~~KVdvD--e~~~ 80 (137)
T 2qsi_A 11 AARPNAP--TLVDEATVDDFIA---HSGKIVVLFFRGDAVRFPEAADLA-VVL--PELINAFPGRLVAAEVAAE--AERG 80 (137)
T ss_dssp ------C--EEECTTTHHHHHH---TSSSEEEEEECCCTTTCTTHHHHH-HHH--HHHHHTSTTTEEEEEECGG--GHHH
T ss_pred HHHhcCC--cccCHhHHHHHHh---cCCCcEEEEEeCCccCCCchhhHH-hHH--HHHHHHccCCcEEEEEECC--CCHH
Confidence 3344442 2445678887773 344699999999999 8898776 333 3344333446889999985 5678
Q ss_pred HHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 237 MSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 237 va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++..|++...|.++++-. .+++.++.|..+.+++.+.|...+
T Consensus 81 la~~ygV~siPTlilFkd-----G~~v~~~vG~~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 81 LMARFGVAVCPSLAVVQP-----ERTLGVIAKIQDWSSYLAQIGAML 122 (137)
T ss_dssp HHHHHTCCSSSEEEEEEC-----CEEEEEEESCCCHHHHHHHHHHHH
T ss_pred HHHHcCCccCCEEEEEEC-----CEEEEEEeCCCCHHHHHHHHHHHh
Confidence 899999999999998864 367899999999998888887666
No 106
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=96.89 E-value=0.0027 Score=51.48 Aligned_cols=88 Identities=13% Similarity=0.138 Sum_probs=65.3
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-----CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCc
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-----NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQ 258 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-----nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~ 258 (412)
...|+++|++++++|..|..+...+ ..+.+-+.. ++.+...|++..+ ++. ++..+|.+.++... +
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~--~v~~~Pt~~~~~~~-~- 92 (121)
T 2djj_A 23 DDTKDVLIEFYAPWCGHCKALAPKY---EELGALYAKSEFKDRVVIAKVDATAND---VPD--EIQGFPTIKLYPAG-A- 92 (121)
T ss_dssp CTTSCEEEEEECSSCTTHHHHHHHH---HHHHHHHTTSSCTTSSEEEEEETTTSC---CSS--CCSSSSEEEEECSS-C-
T ss_pred cCCCCEEEEEECCCCHhHHHhhHHH---HHHHHHHhhcccCCceEEEEEECcccc---ccc--ccCcCCeEEEEeCc-C-
Confidence 4679999999999999999998543 456666654 7888889987655 444 99999999998752 2
Q ss_pred cceeeeeeecCCCHHHHHHHHHHH
Q 015165 259 RIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 259 ~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
.. .+.+..|..+.++|.+.|...
T Consensus 93 ~~-~~~~~~G~~~~~~l~~~i~~~ 115 (121)
T 2djj_A 93 KG-QPVTYSGSRTVEDLIKFIAEN 115 (121)
T ss_dssp TT-SCCCCCCCSCHHHHHHHHHHT
T ss_pred CC-CceEecCCCCHHHHHHHHHhc
Confidence 11 134567888888887777543
No 107
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.89 E-value=0.00076 Score=54.96 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
.+++|...+++||++. +.|+..|..++|||+.||...|++.
T Consensus 39 ~eekVk~L~EmtG~se-eeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQ-DECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHTCCCH-HHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhCCCH-HHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4789999999999988 8999999999999999999999875
No 108
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.88 E-value=0.0019 Score=53.42 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=66.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
..|+++|++++++|..|..+... | ..+.+-+. .++++...|++... .++..|++..+|.+.++... ..+..
T Consensus 24 ~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~~~~g--~~~~~ 96 (133)
T 2dj3_A 24 PKKDVLIEFYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATAND--ITNDQYKVEGFPTIYFAPSG--DKKNP 96 (133)
T ss_dssp TTSEEEEEECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSC--CCCSSCCCSSSSEEEEECTT--CTTSC
T ss_pred CCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCH--HHHhhcCCCcCCEEEEEeCC--Ccccc
Confidence 58999999999999999999854 3 34555554 46888888886543 45667999999999988652 22222
Q ss_pred eeeee-cCCCHHHHHHHHHHHHH
Q 015165 263 LQQVE-GPKSPEEMLMILQKVIE 284 (412)
Q Consensus 263 l~ri~-G~~s~~~ll~~L~~~ie 284 (412)
+ +.. |..+.+.|.+.|...+.
T Consensus 97 ~-~~~gg~~~~~~l~~~l~~~~~ 118 (133)
T 2dj3_A 97 I-KFEGGNRDLEHLSKFIDEHAT 118 (133)
T ss_dssp E-ECCSSCCSTTHHHHHHHHHSS
T ss_pred e-EecCCCcCHHHHHHHHHHhcc
Confidence 2 234 66788888888776654
No 109
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=96.87 E-value=0.0068 Score=49.89 Aligned_cols=100 Identities=13% Similarity=0.028 Sum_probs=69.6
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-----hcCeEEEecccCChhHHHHHhhCCCCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-----NENFVSWGGSIRASEGFKMSNSLKASR 245 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-----~~nfV~w~~dv~~~Eg~~va~~l~~~~ 245 (412)
-..+|.+.+. +..|+++|+++.++|..|..+.. +| ..+.+.+ +.++.+...|++. ...++..|++..
T Consensus 21 ~~~~f~~~~~---~~~~~vlv~F~a~wC~~C~~~~p-~~--~~la~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~ 92 (127)
T 3h79_A 21 TDETFDSIVM---DPEKDVFVLYYVPWSRHSVAAMR-LW--DDLSMSQSQKRNHLTFVAARIDGEK--YPDVIERMRVSG 92 (127)
T ss_dssp CTTTHHHHHT---CTTCEEEEEEECTTCHHHHHHHH-HH--HHHHHHHHTSTTTTTEEEEEEETTT--CHHHHHHTTCCS
T ss_pred ChhhHHHHHh---CCCCCEEEEEECCccHHHHHHhH-HH--HHHHHHHHhcccCCCeEEEEEEccc--cHhHHHhcCCcc
Confidence 4456666654 45899999999999999998873 22 2333322 2368888888874 446788999999
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
||.+.++.... ... ..+..|..+.+.|.+.|..
T Consensus 93 ~Pt~~~~~~g~--~~~-~~~~~G~~~~~~l~~~i~~ 125 (127)
T 3h79_A 93 FPTMRYYTRID--KQE-PFEYSGQRYLSLVDSFVFQ 125 (127)
T ss_dssp SSEEEEECSSC--SSS-CEECCSCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCC--CCC-ceEecCCccHHHHHHHHHh
Confidence 99999887522 222 1245688898888776643
No 110
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=96.86 E-value=0.0036 Score=53.15 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=67.5
Q ss_pred HHHhcCcEEEEEEeCCCCCChhHH-HhhcCCChHHHHHHh----cCeEEEecccC-------Chh---------------
Q 015165 181 RSRSVFKLLFVYLHSPDHPDTPAF-CEGTLCNEVLAAFVN----ENFVSWGGSIR-------ASE--------------- 233 (412)
Q Consensus 181 ~Ak~e~K~LlVyLh~~~~~~s~~F-~r~vL~~~~v~~~l~----~nfV~w~~dv~-------~~E--------------- 233 (412)
.+.-.+|+++|++..++|..|... . +.+.++.+ .++.+.+.++. +.+
T Consensus 23 l~~~~gk~vlv~f~a~wC~~C~~~~~------~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (158)
T 3eyt_A 23 LADLRGKVIVIEAFQMLCPGCVMHGI------PLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPV 96 (158)
T ss_dssp TGGGTTSEEEEEEECTTCHHHHHTHH------HHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCE
T ss_pred HHHhCCCEEEEEEECCcCcchhhhhh------HHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceE
Confidence 344458999999999988877763 3 33444433 35777776652 111
Q ss_pred -----HH----HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 234 -----GF----KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 234 -----g~----~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+. .++..|++..+|.++||++. ..++.+..|..+.+++...|...+.+
T Consensus 97 ~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll~~ 153 (158)
T 3eyt_A 97 GVDQPGDGAMPRTMAAYQMRGTPSLLLIDKA----GDLRAHHFGDVSELLLGAEIATLLGE 153 (158)
T ss_dssp EEECCCSSSSCHHHHHTTCCSSSEEEEECTT----SEEEEEEESCCCHHHHHHHHHHHHTS
T ss_pred EEcCccchhhHHHHHHcCCCCCCEEEEECCC----CCEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 11 47888999999999999874 35777888999999988888877754
No 111
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.81 E-value=0.0032 Score=53.02 Aligned_cols=80 Identities=8% Similarity=0.032 Sum_probs=56.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.|.+++..+ ..+|+++|+++.++|..|..+. +.+.++.++ ++.|...|+++.. ..|++..+|.+.+
T Consensus 19 ~~~~~v~~~-~~~~~vvv~f~a~wC~~C~~~~------p~l~~la~~~~~v~~~~vd~~~~~-----~~~~i~~~Pt~~~ 86 (135)
T 2dbc_A 19 QYVNEVTNA-EKDLWVVIHLYRSSVPMCLVVN------QHLSVLARKFPETKFVKAIVNSCI-----EHYHDNCLPTIFV 86 (135)
T ss_dssp HHHHHTTTC-CSSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCSSEEEEEECCSSSC-----SSCCSSCCSEEEE
T ss_pred HHHHHHHhc-CCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCcEEEEEEhhcCc-----ccCCCCCCCEEEE
Confidence 344444433 2458999999999999999887 334444443 5788888887643 6899999999888
Q ss_pred EeCCCCccceeeeeeecCC
Q 015165 252 VMPAANQRIALLQQVEGPK 270 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~ 270 (412)
+.. | .++.++.|..
T Consensus 87 ~~~--G---~~v~~~~G~~ 100 (135)
T 2dbc_A 87 YKN--G---QIEGKFIGII 100 (135)
T ss_dssp ESS--S---SCSEEEESTT
T ss_pred EEC--C---EEEEEEEeEE
Confidence 752 3 3566777875
No 112
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=96.80 E-value=0.014 Score=49.71 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=65.3
Q ss_pred cCcEEEEEEeCCCCCC-hhHHHhhcCCChHHHHHHhc-----CeEEEecccCC----h----------------------
Q 015165 185 VFKLLFVYLHSPDHPD-TPAFCEGTLCNEVLAAFVNE-----NFVSWGGSIRA----S---------------------- 232 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~-s~~F~r~vL~~~~v~~~l~~-----nfV~w~~dv~~----~---------------------- 232 (412)
.+|+++||+...+|.. |......+ ..+.+-+.+ ++.+.+.+++. +
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELEKM---IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHHHH---HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHHHH---HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4789999999998887 77665322 233333332 56555555542 1
Q ss_pred hHHHHHhhCCCCCCc---------------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 233 EGFKMSNSLKASRYP---------------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 233 Eg~~va~~l~~~~~P---------------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
....+++.|++...| .+.||++. ..++.+..|..+++++...|...+..|
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~ll~~~ 163 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPD----GEFLDYFGQNKRKGEIAASIATHMRPY 163 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTT----SCEEEEEETTCCHHHHHHHHHHHHGGG
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCC----CeEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 123578889999899 78888874 356677788899999999998887665
No 113
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=96.78 E-value=0.008 Score=51.15 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=65.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee--
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL-- 262 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v-- 262 (412)
..|+++|+++.++|..|..+...+ +.+.+-+..++.+...|+++.. .++..|++..+|.+.++.. |..+.+
T Consensus 22 ~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~--~~~~~~~i~~~Pt~~~~~~--G~~v~~~~ 94 (142)
T 1qgv_A 22 EDRVVVIRFGHDWDPTCMKMDEVL---YSIAEKVKNFAVIYLVDITEVP--DFNKMYELYDPCTVMFFFR--NKHIMIDL 94 (142)
T ss_dssp SSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTEEEEEEETTTCC--TTTTSSCSCSSCEEEEEET--TEEEEEEC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCeEEEEEccccCH--HHHHHcCCCCCCEEEEEEC--CcEEEEec
Confidence 589999999999999999988432 3444445557889999987543 4788999999999988853 211111
Q ss_pred ----eeeeecCCC-HHHHHHHHHHHHH
Q 015165 263 ----LQQVEGPKS-PEEMLMILQKVIE 284 (412)
Q Consensus 263 ----l~ri~G~~s-~~~ll~~L~~~ie 284 (412)
-.++.|..+ .++|...|..++.
T Consensus 95 g~~~~~~~~g~~~~~~~l~~~i~~~~~ 121 (142)
T 1qgv_A 95 GTGNNNKINWAMEDKQEMVDIIETVYR 121 (142)
T ss_dssp C------CCSCCSCHHHHHHHHHHHHH
T ss_pred CCCCcceeeeecCcHHHHHHHHHHHHH
Confidence 014667664 7888888776664
No 114
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=96.70 E-value=0.007 Score=53.03 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=63.5
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCCh--h-HHHHHhhCCCC-------------
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS--E-GFKMSNSLKAS------------- 244 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~--E-g~~va~~l~~~------------- 244 (412)
+.-.+|+++|++.+++|..|......+ ..+.+-+. .++.+.+.+++.. + ...+...++..
T Consensus 56 ~~~~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 132 (186)
T 1jfu_A 56 SDFRGKTLLVNLWATWCVPCRKEMPAL---DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVF 132 (186)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHH
T ss_pred HHcCCCEEEEEEEeCCCHhHHHHHHHH---HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHH
Confidence 334689999999999988777666332 23333333 4677777776643 2 23445555543
Q ss_pred ----------CCceEEEEeCCCCccceeeeeeecCCC--HHHHHHHHHHHHHh
Q 015165 245 ----------RYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQKVIEE 285 (412)
Q Consensus 245 ----------~~P~l~lI~~~~~~~~~vl~ri~G~~s--~~~ll~~L~~~ie~ 285 (412)
.+|.+.||++. ..|+.+..|..+ .+++...|...+.+
T Consensus 133 ~~~~~~~~~~~~P~~~lid~~----G~i~~~~~g~~~~~~~~l~~~l~~ll~~ 181 (186)
T 1jfu_A 133 QDLKAIGRALGMPTSVLVDPQ----GCEIATIAGPAEWASEDALKLIRAATGK 181 (186)
T ss_dssp HHHHTTTCCSSSSEEEEECTT----SBEEEEEESCCCTTSHHHHHHHHHHHC-
T ss_pred HHhccccccCCCCEEEEECCC----CCEEEEEecCCccCHHHHHHHHHHHhcc
Confidence 78999999874 356677788765 67888877776643
No 115
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=96.68 E-value=0.019 Score=51.93 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHHHHhcCcEE-EEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 179 LQRSRSVFKLL-FVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 179 l~~Ak~e~K~L-lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
++..+...+.+ +|++++++|..|..+...+ ..+..-.. .++.+...|++. ...++..|++..+|.+.++.
T Consensus 126 ~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~ 200 (226)
T 1a8l_A 126 KQAIRNIDQDVRILVFVTPTCPYCPLAVRMA---HKFAIENTKAGKGKILGDMVEAIE--YPEWADQYNVMAVPKIVIQV 200 (226)
T ss_dssp HHHHTTCCSCEEEEEEECSSCTTHHHHHHHH---HHHHHHHHHTTCCCEEEEEEEGGG--CHHHHHHTTCCSSCEEEEEE
T ss_pred HHHHHhcCCCcEEEEEeCCCCCccHHHHHHH---HHHHHhcccccCCcEEEEEEEccc--CHHHHHhCCCcccCeEEEEe
Confidence 33344444455 9999999999999988433 34544444 478888888764 34578899999999977764
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.| ..+.+..|..+.++|...|...+
T Consensus 201 --~G---~~~~~~~G~~~~~~l~~~l~~~l 225 (226)
T 1a8l_A 201 --NG---EDRVEFEGAYPEKMFLEKLLSAL 225 (226)
T ss_dssp --TT---EEEEEEESCCCHHHHHHHHHHHH
T ss_pred --CC---ceeEEEcCCCCHHHHHHHHHHhh
Confidence 22 34567889999988888776654
No 116
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0032 Score=52.69 Aligned_cols=94 Identities=12% Similarity=-0.017 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCC-----
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKAS----- 244 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~----- 244 (412)
-..+|.+++ +....|+++|++++++|..|..+...+ ..+.+-+.. ++.+...|+++. ..++..|++.
T Consensus 13 ~~~~f~~~~--~~~~~~~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~v~~~~vd~~~~--~~~~~~~~v~~~~~~ 85 (137)
T 2dj0_A 13 NDKTIDEEL--ERDKRVTWIVEFFANWSNDCQSFAPIY---ADLSLKYNCTGLNFGKVDVGRY--TDVSTRYKVSTSPLT 85 (137)
T ss_dssp CTTHHHHHH--HHSTTSCEEEEECCTTCSTTTTTHHHH---HHHHHHHCSSSCEEEECCTTTC--HHHHHHTTCCCCSSS
T ss_pred cHhhHHHHH--hcCCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhCCCCeEEEEEeCccC--HHHHHHccCcccCCc
Confidence 345677777 345567999999999999999887433 344444443 789999998754 3577889998
Q ss_pred -CCceEEEEeCCCCccceeeeeeecCCCHHHHH
Q 015165 245 -RYPFCAVVMPAANQRIALLQQVEGPKSPEEML 276 (412)
Q Consensus 245 -~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll 276 (412)
.+|.+.++. .| .++.+..|..+.+.+.
T Consensus 86 ~~~Pt~~~~~--~G---~~~~~~~G~~~~~~l~ 113 (137)
T 2dj0_A 86 KQLPTLILFQ--GG---KEAMRRPQIDKKGRAV 113 (137)
T ss_dssp SCSSEEEEES--SS---SEEEEESCBCSSSCBC
T ss_pred CCCCEEEEEE--CC---EEEEEecCcCchHHHH
Confidence 999998883 22 3566777877655543
No 117
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=96.58 E-value=0.014 Score=51.02 Aligned_cols=96 Identities=9% Similarity=0.040 Sum_probs=64.8
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-Ce------EEEecccCC--hhHH-HHHh------------
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NF------VSWGGSIRA--SEGF-KMSN------------ 239 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nf------V~w~~dv~~--~Eg~-~va~------------ 239 (412)
+.-.+|++||+++.++|..|......+ ..+.+-+.+ ++ .+++.++++ .+.+ ....
T Consensus 55 ~~~~gk~vlv~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~ 131 (183)
T 3lwa_A 55 SDFENQVVILNAWGQWCAPCRSESDDL---QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDP 131 (183)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECT
T ss_pred HHhCCCEEEEEEECCcCHhHHHHHHHH---HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECC
Confidence 334579999999999998888776332 223333333 46 888888776 3322 2222
Q ss_pred ------h---CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 240 ------S---LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 240 ------~---l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
. |++..+|.++||++. ..++.+..|..+.+++...|...+.
T Consensus 132 ~~~~~~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~ll~ 181 (183)
T 3lwa_A 132 PFMTAASLGGVPASVIPTTIVLDKQ----HRPAAVFLREVTSKDVLDVALPLVD 181 (183)
T ss_dssp TCGGGGGTTTCCTTCCSEEEEECTT----SCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred cchHHHHhccCCCCCCCeEEEECCC----CcEEEEEcCCCCHHHHHHHHHHHHh
Confidence 1 257889999999874 3567778899999999888877764
No 118
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=96.57 E-value=0.0069 Score=45.60 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=58.4
Q ss_pred EEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 189 LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
.+|++++++|..|..+...+ +.+.+-...++.+...|+++.. .++..|++..+|.+.+ . | +. ++.|
T Consensus 4 ~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~-~---G-~~----~~~G 69 (85)
T 1nho_A 4 NIEVFTSPTCPYCPMAIEVV---DEAKKEFGDKIDVEKIDIMVDR--EKAIEYGLMAVPAIAI-N---G-VV----RFVG 69 (85)
T ss_dssp CEEEESCSSSCCSTTHHHHH---HHHHHHHCSSCCEEEECTTTCG--GGGGGTCSSCSSEEEE-T---T-TE----EEEC
T ss_pred EEEEEECCCCcchHHHHHHH---HHHHHHhcCCeEEEEEECCCCH--HHHHhCCceeeCEEEE-C---C-EE----EEcc
Confidence 37889999999999988432 3444444447778888886443 5778899999999887 2 2 22 5678
Q ss_pred CCCHHHHHHHHHHHH
Q 015165 269 PKSPEEMLMILQKVI 283 (412)
Q Consensus 269 ~~s~~~ll~~L~~~i 283 (412)
..+.+++.+.|...+
T Consensus 70 ~~~~~~l~~~l~~~l 84 (85)
T 1nho_A 70 APSREELFEAINDEM 84 (85)
T ss_dssp SSCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888887776543
No 119
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=96.56 E-value=0.0026 Score=53.05 Aligned_cols=92 Identities=11% Similarity=0.086 Sum_probs=63.9
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCC-hhHHH-------------------H--Hh
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA-SEGFK-------------------M--SN 239 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~-~Eg~~-------------------v--a~ 239 (412)
.-.+|+++|++.+++|..|......+-..+.+.+.+. .++.+.+.++++ .+.+. + +.
T Consensus 24 ~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 103 (142)
T 3ewl_A 24 RLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQ 103 (142)
T ss_dssp GCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTT
T ss_pred hcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHH
Confidence 3358999999999999999888755544556666554 468888887764 33221 2 33
Q ss_pred hCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 240 SLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 240 ~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
.|++..+|.+.+|++.+ .++. |..+.+++.+.|..
T Consensus 104 ~~~v~~~P~~~lid~~G----~i~~---~~~~~~~l~~~l~~ 138 (142)
T 3ewl_A 104 LYDIRATPTIYLLDGRK----RVIL---KDTSMEQLIDYLAT 138 (142)
T ss_dssp CSCCCSSSEEEEECTTC----BEEE---CSCCHHHHHHHHHC
T ss_pred HcCCCCCCeEEEECCCC----CEEe---cCCCHHHHHHHHHH
Confidence 79999999999998742 3443 55777777666654
No 120
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.0079 Score=57.92 Aligned_cols=104 Identities=10% Similarity=0.037 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|.+++ .+..++++|+++.++|..|..+...+ ..+.+-+..++.+..+|++..+...++..|++..||.+.++.
T Consensus 26 ~f~~~i---~~~~~~vlV~F~A~wC~~C~~~~p~~---~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~ 99 (298)
T 3ed3_A 26 SFDKAI---HNTNYTSLVEFYAPWCGHCKKLSSTF---RKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFR 99 (298)
T ss_dssp HHHHHH---TSSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEE
T ss_pred HHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEE
Confidence 344444 24678999999999999999988433 355555666677777888766778899999999999999987
Q ss_pred CCC------Cc------cceeeeeeecCCCHHHHHHHHHHHH
Q 015165 254 PAA------NQ------RIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 254 ~~~------~~------~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
... +. .........|..+.+.++..+...+
T Consensus 100 ~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~ 141 (298)
T 3ed3_A 100 PPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRI 141 (298)
T ss_dssp CCCC-------------CCCEEEECCSCCSHHHHHHHHHTTC
T ss_pred CCceeecccccccccccccccceeecCCcCHHHHHHHHHHhc
Confidence 521 00 0113445679999999888887655
No 121
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=96.53 E-value=0.037 Score=47.37 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=66.4
Q ss_pred cCcEEEEEEeCCCCCC-hhHHHhhcCCChHHHHHHh-----cCeEEEecccC----Chh---------------------
Q 015165 185 VFKLLFVYLHSPDHPD-TPAFCEGTLCNEVLAAFVN-----ENFVSWGGSIR----ASE--------------------- 233 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~-s~~F~r~vL~~~~v~~~l~-----~nfV~w~~dv~----~~E--------------------- 233 (412)
.+|+++|++...+|.. |......+ ..+.+-+. .++.+.+.+++ +++
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~~l---~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELEKL---VQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHHHH---HHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHHHH---HHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 4789999999999997 87766322 23333342 36666666654 122
Q ss_pred -HHHHHhhCCCCCCc---------------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 234 -GFKMSNSLKASRYP---------------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 234 -g~~va~~l~~~~~P---------------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
...+++.|++...| .+.||++. ..++.+..|..+++++...|...+..+
T Consensus 102 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~ll~~~ 166 (171)
T 2rli_A 102 QVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPD----GLFTDYYGRSRSAEQISDSVRRHMAAF 166 (171)
T ss_dssp HHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTT----SCEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCC----CeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 23577889998888 78888874 356677889999999998888877654
No 122
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=96.51 E-value=0.0098 Score=50.14 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=63.4
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEeccc---CC----------------------hhHHHHHhh
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSI---RA----------------------SEGFKMSNS 240 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv---~~----------------------~Eg~~va~~ 240 (412)
|+++|++.+++|..|..+... +.++.++ ++.+++.++ .+ .+...++..
T Consensus 31 k~vll~f~~~~C~~C~~~~~~------l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPG------LHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAAR 104 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHH------HHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTT
T ss_pred CeEEEEEEcccChhHHHHHHH------HHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHH
Confidence 889999999999888877643 3333222 555555555 12 145667889
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|++..+|.++||++. ..++.+..|..+.++|...|.....
T Consensus 105 ~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~l~~~~~ 144 (154)
T 3ia1_A 105 FKVLGQPWTFVVDRE----GKVVALFAGRAGREALLDALLLAGA 144 (154)
T ss_dssp SSBCSSCEEEEECTT----SEEEEEEESBCCHHHHHHHHHHTTC
T ss_pred hCCCcccEEEEECCC----CCEEEEEcCCCCHHHHHHHHHhccC
Confidence 999999999999874 3567788899999988888876543
No 123
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=96.50 E-value=0.0036 Score=53.51 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=63.2
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCC-----------------hhHHHHHhhCCCC
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA-----------------SEGFKMSNSLKAS 244 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~-----------------~Eg~~va~~l~~~ 244 (412)
.-.+|+++|++.+++|..|......+ ..+.+-+. .++.+.+.++.. .....++..|++.
T Consensus 38 ~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 114 (158)
T 3hdc_A 38 QYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGAN 114 (158)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCC
T ss_pred HhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCC
Confidence 33679999999999998887766332 23333333 478888877765 1234678899999
Q ss_pred CCceEEEEeCCCCccceeeeeeecCCC--HHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPKS--PEEMLMILQ 280 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~s--~~~ll~~L~ 280 (412)
.+|.++||++. ..++.+..|..+ ..++++.+.
T Consensus 115 ~~P~~~lid~~----G~i~~~~~G~~~~~~~~~~~~~~ 148 (158)
T 3hdc_A 115 RLPDTFIVDRK----GIIRQRVTGGIEWDAPKVVSYLK 148 (158)
T ss_dssp SSSEEEEECTT----SBEEEEEESCCCTTSHHHHHHHH
T ss_pred CcceEEEEcCC----CCEEEEEeCCCccchHHHHHHHH
Confidence 99999999874 357778888754 455555543
No 124
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=96.46 E-value=0.022 Score=48.64 Aligned_cols=88 Identities=9% Similarity=0.141 Sum_probs=63.0
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccC-------------------ChhH--------
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIR-------------------ASEG-------- 234 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~-------------------~~Eg-------- 234 (412)
-.+|+++|++.+++|..|..+. +.+.++.++ ++.+.+.++. +.+.
T Consensus 35 ~~gk~~lv~F~~~~C~~C~~~~------~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (165)
T 3ha9_A 35 VGGDVVILWFMAAWCPSCVYMA------DLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANY 108 (165)
T ss_dssp CCSSEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHH
T ss_pred hCCCEEEEEEECCCCcchhhhH------HHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHc
Confidence 3679999999999999998877 445555443 6777777665 2221
Q ss_pred -----------HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCC-CHHHHHHHHHHHH
Q 015165 235 -----------FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPK-SPEEMLMILQKVI 283 (412)
Q Consensus 235 -----------~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~-s~~~ll~~L~~~i 283 (412)
..++..|++..+|.++||+... .++. .|.. +.+++...|...+
T Consensus 109 ~~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G----~i~~--~g~~~~~~~l~~~l~~l~ 163 (165)
T 3ha9_A 109 GDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSS----NVLY--AGTTPSLGELESVIKSVQ 163 (165)
T ss_dssp SCTTSEEEECCSHHHHHTTCCSSSEEEEEETTC----CEEE--EEESCCHHHHHHHHHHC-
T ss_pred CCCCeeEEeChHHHHHHhCCCCceEEEEEcCCC----cEEE--eCCCCCHHHHHHHHHHHh
Confidence 2678889999999999999742 3343 6777 8888777776543
No 125
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=96.46 E-value=0.025 Score=47.55 Aligned_cols=90 Identities=10% Similarity=0.089 Sum_probs=63.3
Q ss_pred cCcEEEEEEeCCCCCC--hhHHHhhcCCChHHHHHH-h-cCeEEEecccCChh-----------------------HHHH
Q 015165 185 VFKLLFVYLHSPDHPD--TPAFCEGTLCNEVLAAFV-N-ENFVSWGGSIRASE-----------------------GFKM 237 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~--s~~F~r~vL~~~~v~~~l-~-~nfV~w~~dv~~~E-----------------------g~~v 237 (412)
.+|+++|++..++|.. |......+ ..+.+-+ . .++.+.+.++++.. ...+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~~l---~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNSEL---REIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHHHH---HHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHHHH---HHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 5799999999999999 98877332 1233333 3 35778887777553 2367
Q ss_pred HhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 238 SNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+..|++..+|.+.||++.+ .++.+. .+.+++.+.|...+.
T Consensus 109 ~~~~~v~~~P~~~lid~~G----~i~~~~---~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSDG----KILAKN---LRGEELKKKIENIVE 148 (150)
T ss_dssp HHHTTCCSSSEEEEECTTS----BEEEES---CCHHHHHHHHHHHHH
T ss_pred HHHcCCCccCeEEEECCCC----EEEEcc---CCHHHHHHHHHHHHh
Confidence 8889999999999998742 344443 377777777776664
No 126
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=96.46 E-value=0.016 Score=60.28 Aligned_cols=109 Identities=9% Similarity=-0.011 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
..+|.+.+ .+..|+++|+++.++|..|..+.-.+ +.+.+-+.. ++.+...|+++.+...++..|++..||.
T Consensus 19 ~~~f~~~v---~~~~k~vlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PT 92 (519)
T 3t58_A 19 ADSVRPTV---LGSSSAWAVEFFASWCGHAIAFAPTW---KELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPT 92 (519)
T ss_dssp TTTHHHHH---SSCSSEEEEEEECTTSHHHHHHHHHH---HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSE
T ss_pred hHHHHHHH---HhCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCE
Confidence 34555544 24569999999999999999998433 455555555 7999999998888889999999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
+.++.... .....+....|..+++.+.+.|...++.+.
T Consensus 93 l~~f~~g~-~~G~~~~~~~g~~~~~~L~~~l~~~l~~~~ 130 (519)
T 3t58_A 93 VRFFQAFT-KNGSGATLPGAGANVQTLRMRLIDALESHR 130 (519)
T ss_dssp EEEECTTC-CSCCCEEECCSSCCHHHHHHHHHHHHTTCC
T ss_pred EEEEcCcc-cCCCceeEecCCCCHHHHHHHHHHHHhhcc
Confidence 99998521 111233345677899999999988887654
No 127
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=96.44 E-value=0.021 Score=48.13 Aligned_cols=90 Identities=12% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChh-----------------------HHHHHhh
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-----------------------GFKMSNS 240 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~E-----------------------g~~va~~ 240 (412)
.+|+++|++.+++|..|..+...+ ..+.+-+. .++.+.+.++++.. ...++..
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPYL---LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHHH---HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 579999999999999988776432 22333333 35888887776532 4567889
Q ss_pred CCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 241 LKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 241 l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|++..+|.++||++. | .++.+. .+.+++...|...+.
T Consensus 105 ~~v~~~P~~~lid~~-G---~i~~~~---~~~~~l~~~l~~l~~ 141 (152)
T 2lrn_A 105 YCIVGFPHIILVDPE-G---KIVAKE---LRGDDLYNTVEKFVN 141 (152)
T ss_dssp TTCCSSCEEEEECTT-S---EEEEEC---CCTTHHHHHHHHHHT
T ss_pred hCCCcCCeEEEECCC-C---eEEEee---CCHHHHHHHHHHHHh
Confidence 999999999999874 2 445443 345566666655543
No 128
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=96.42 E-value=0.02 Score=51.99 Aligned_cols=100 Identities=13% Similarity=0.200 Sum_probs=73.2
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcC---eEEEecccCChhHHHHHhhCCCCCCc
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN---FVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~n---fV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
-..+|++++ .++|+++|+++.++|..|..+...+ ..+.+-+... +.+...|++.. ..++..|++..+|
T Consensus 21 ~~~~~~~~~----~~~~~v~v~F~a~wC~~C~~~~p~~---~~~~~~~~~~~~~~~~~~vd~~~~--~~l~~~~~v~~~P 91 (241)
T 3idv_A 21 NDANFDNFV----ADKDTVLLEFYAPWCGHCKQFAPEY---EKIANILKDKDPPIPVAKIDATSA--SVLASRFDVSGYP 91 (241)
T ss_dssp CTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHHTSSSCCCEEEEETTTC--HHHHHHTTCCSSS
T ss_pred cccCHHHHH----hcCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhhcCCceEEEEEeccCC--HHHHHhcCCCcCC
Confidence 445666655 4689999999999999999988433 3444444443 88888887643 4688999999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.+.++.. | .++ +..|..+.+++.+.+...+..
T Consensus 92 t~~~~~~--g---~~~-~~~g~~~~~~l~~~i~~~~~~ 123 (241)
T 3idv_A 92 TIKILKK--G---QAV-DYEGSRTQEEIVAKVREVSQP 123 (241)
T ss_dssp EEEEEET--T---EEE-ECCSCSCHHHHHHHHHHHHST
T ss_pred EEEEEcC--C---Ccc-cccCcccHHHHHHHHhhccCc
Confidence 9998853 3 233 467899999988888776543
No 129
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=96.39 E-value=0.0018 Score=64.18 Aligned_cols=41 Identities=37% Similarity=0.567 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
..+++.+|-+|||++. ..|.+||+..+|+||.||..||..+
T Consensus 45 ~~~~~~~f~~~~~~~~-~~~~~~l~~~~w~~~~~~~~~~~~~ 85 (362)
T 4gew_A 45 DEQKLHEFAIITATDE-AFAQSILQDVDWDLKKALDVFYGSE 85 (362)
T ss_dssp HHHHHHHHHHHHTCCH-HHHHHHTTSSSSCHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHhCCcH-HHHHHHHhhcCchHHHHHHHHcCCc
Confidence 5679999999999666 8999999999999999999999643
No 130
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=96.30 E-value=0.035 Score=47.74 Aligned_cols=108 Identities=12% Similarity=0.103 Sum_probs=78.2
Q ss_pred HHHHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCC--CCChhHHHhhcCCChHHHHHHh---cC-eEEEeccc
Q 015165 156 VAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVN---EN-FVSWGGSI 229 (412)
Q Consensus 156 ~~~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~--~~~s~~F~r~vL~~~~v~~~l~---~n-fV~w~~dv 229 (412)
++.+.++ |-. ..-..+|++.+. ..+++||++..++ |..|..+. |-+-++.+ .. +.++..|+
T Consensus 11 ~~rl~~~-g~~--~~t~~~F~~~v~----~~~~vlVdF~a~~crCgpCk~ia------Pvleela~e~~g~~v~~~KVdv 77 (140)
T 2qgv_A 11 WQRMLAR-GWT--PVSESRLDDWLT----QAPDGVVLLSSDPKRTPEVSDNP------VMIGELLHEFPDYTWQVAIADL 77 (140)
T ss_dssp HHHHHHT-TCE--ECCHHHHHHHHH----TCSSEEEEECCCTTTCTTTTHHH------HHHHHHHTTCTTSCCEEEECCH
T ss_pred HHHHHhc-CCc--cCCHHHHHHHHh----CCCCEEEEEeCCcccCCcHHHHH------hHHHHHHHHcCCCeEEEEEEEC
Confidence 3444455 543 334556777662 4567889999988 78887666 33334443 35 78888888
Q ss_pred CChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 230 RASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 230 ~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+ +.-.++..|++...|.++++-. .+++.++.|..+.+++.+.|...+
T Consensus 78 D--e~~~lA~~ygV~sIPTlilFk~-----G~~v~~~~G~~~k~~l~~~i~~~l 124 (140)
T 2qgv_A 78 E--QSEAIGDRFGAFRFPATLVFTG-----GNYRGVLNGIHPWAELINLMRGLV 124 (140)
T ss_dssp H--HHHHHHHHHTCCSSSEEEEEET-----TEEEEEEESCCCHHHHHHHHHHHH
T ss_pred C--CCHHHHHHcCCccCCEEEEEEC-----CEEEEEEecCCCHHHHHHHHHHHh
Confidence 6 5678999999999999988764 367889999999888888887666
No 131
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=96.30 E-value=0.011 Score=44.41 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=58.5
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeee
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQV 266 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri 266 (412)
+..+|++++++|..|..+...+ ..+.+-...++.+...|+++.. .++..|++..+|.+.+ .| +. +.
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~v~~~Pt~~~----~G-~~----~~ 68 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKRVV---EEVANEMPDAVEVEYINVMENP--QKAMEYGIMAVPTIVI----NG-DV----EF 68 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHHHH---HHHHHHCSSSEEEEEEESSSSC--CTTTSTTTCCSSEEEE----TT-EE----EC
T ss_pred ceEEEEEeCCCCCchHHHHHHH---HHHHHHcCCceEEEEEECCCCH--HHHHHCCCcccCEEEE----CC-EE----ee
Confidence 4568999999999999887422 2333333347888888886543 5678899999999887 22 22 56
Q ss_pred ecCCCHHHHHHHHHHH
Q 015165 267 EGPKSPEEMLMILQKV 282 (412)
Q Consensus 267 ~G~~s~~~ll~~L~~~ 282 (412)
.|..+.+++.+.|...
T Consensus 69 ~G~~~~~~l~~~l~~~ 84 (85)
T 1fo5_A 69 IGAPTKEALVEAIKKR 84 (85)
T ss_dssp CSSSSSHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHh
Confidence 7888888887777543
No 132
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=96.29 E-value=0.02 Score=48.70 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=63.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccCChhHH---------------------HHHhhCC
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRASEGF---------------------KMSNSLK 242 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~~~Eg~---------------------~va~~l~ 242 (412)
.+|+++|++..++|..|......+ ..+.+-+ +.++.+.+.++++.+.. .++..|+
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNLAL---RELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHHHH---HHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 478999999999988887666322 1233222 23688888887765431 2778899
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
+..+|.++||++. ..++.+..|..+.++.+..+.
T Consensus 111 v~~~P~~~lid~~----G~i~~~~~g~~~~e~~~~~~~ 144 (152)
T 2lrt_A 111 VTNLPSVFLVNRN----NELSARGENIKDLDEAIKKLL 144 (152)
T ss_dssp CCSCSEEEEEETT----TEEEEETTTCSCHHHHHHHHH
T ss_pred cccCceEEEECCC----CeEEEecCCHHHHHHHHHHHH
Confidence 9999999999974 367778888888877665553
No 133
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.16 E-value=0.0052 Score=44.26 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.+++++ |+.|.+.++..|..++||++.||...|.+..
T Consensus 9 ~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 9 FQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 46789999998 9999667899999999999999999997543
No 134
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=96.15 E-value=0.0081 Score=51.14 Aligned_cols=97 Identities=12% Similarity=0.071 Sum_probs=61.0
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcC-------------------------CChHHHHHHhc-CeEEEecccCChhHH
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTL-------------------------CNEVLAAFVNE-NFVSWGGSIRASEGF 235 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL-------------------------~~~~v~~~l~~-nfV~w~~dv~~~Eg~ 235 (412)
+...+|+++|+++.++|..|..+...+- ..+.+.+|++. ++-+|..+. .+..
T Consensus 34 ~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~ 111 (164)
T 2h30_A 34 YLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVT--DNGG 111 (164)
T ss_dssp GCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEE--CTTC
T ss_pred HHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEE--cCch
Confidence 3345789999999999988887652210 01123333332 111111111 1234
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.++..|++..+|.+.||+.. ..++.++.|..+.+++...|...+.
T Consensus 112 ~~~~~~~v~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~~~~ 156 (164)
T 2h30_A 112 TIAQNLNISVYPSWALIGKD----GDVQRIVKGSINEAQALALIRNPNA 156 (164)
T ss_dssp HHHHHTTCCSSSEEEEECTT----SCEEEEEESCCCHHHHHHHHHCTTC
T ss_pred HHHHHcCCCccceEEEECCC----CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 67788999999999999874 2467778899998888777765543
No 135
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.15 E-value=0.017 Score=47.25 Aligned_cols=96 Identities=10% Similarity=0.172 Sum_probs=68.6
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
-..+|.++++ .+ ++|++++++|..|..+...+ ..+.+.+.. ++.+...|+++.. .++..|++..+|.+
T Consensus 13 ~~~~f~~~~~-----~~-vlv~f~a~wC~~C~~~~p~~---~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~v~~~Pt~ 81 (126)
T 1x5e_A 13 TDENWRELLE-----GD-WMIEFYAPWCPACQNLQPEW---ESFAEWGEDLEVNIAKVDVTEQP--GLSGRFIINALPTI 81 (126)
T ss_dssp CTTTHHHHTS-----SE-EEEEEECSSCHHHHHHHHHH---HHHHHHHGGGTCEEEEEETTTCH--HHHHHTTCCSSSEE
T ss_pred cHHHHHHHhC-----CC-EEEEEECCCCHHHHHHhHHH---HHHHHHhccCCeEEEEEECcCCH--HHHHHcCCcccCEE
Confidence 3456666542 23 79999999999999988433 345444443 7888888887543 57888999999999
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.++ . .| .+ .+..|..+.++|.+.|...+
T Consensus 82 ~~~-~-~G---~~-~~~~G~~~~~~l~~~l~~~~ 109 (126)
T 1x5e_A 82 YHC-K-DG---EF-RRYQGPRTKKDFINFISDKE 109 (126)
T ss_dssp EEE-E-TT---EE-EECCSCCCHHHHHHHHHTCG
T ss_pred EEE-e-CC---eE-EEeecCCCHHHHHHHHHHHh
Confidence 998 3 23 22 56789999888877776544
No 136
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=96.11 E-value=0.0059 Score=44.76 Aligned_cols=40 Identities=23% Similarity=0.477 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
++.+.|..|...||..- +=|...|+.++||++.|+..|..
T Consensus 6 ~q~~mv~~~s~~Tgmn~-~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNL-EWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36788999999999776 78999999999999999999966
No 137
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.09 E-value=0.0084 Score=41.65 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+.+++ |+.|.+.++..|..++||++.||...|.+
T Consensus 7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 46789999997 88886778999999999999999988753
No 138
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.98 E-value=0.0084 Score=44.52 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
.+++|.+.+++ |++. +.|+..|..++||++.|+.-.|.+..+
T Consensus 9 ~~~~I~~L~~M-GF~~-~~a~~AL~~~~~nve~A~e~L~~~~~~ 50 (63)
T 1wji_A 9 DEKALKHITEM-GFSK-EASRQALMDNGNNLEAALNVLLTSNKQ 50 (63)
T ss_dssp CHHHHHHHHTT-TCCH-HHHHHHHHHTTSCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 46789999985 8877 899999999999999999999986653
No 139
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.94 E-value=0.014 Score=44.67 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.+++++ |+.|.+.++..|..++||++.||...|.+..
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~ 70 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGASG 70 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 46789999998 8887688899999999999999999998654
No 140
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=95.92 E-value=0.037 Score=48.63 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=70.9
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|++++.. +..|+++|.+..++|..|..+- .+| +++.+-..+..+|+.+||++ .-.++..|++...|.++++-
T Consensus 31 ~f~~~v~~--~~~k~VVVdF~A~WCgPCk~m~-Pvl--eelA~e~~~~v~f~kVDVDe--~~e~a~~y~V~siPT~~fFk 103 (160)
T 2av4_A 31 AVDQAIVN--EDERLVCIRFGHDYDPDCMKMD-ELL--YKVADDIKNFCVIYLVDITE--VPDFNTMYELYDPVSVMFFY 103 (160)
T ss_dssp HHHHHHHH--CSSSEEEEEEECTTSHHHHHHH-HHH--HHHHHHHTTTEEEEEEETTT--CCTTTTTTTCCSSEEEEEEE
T ss_pred HHHHHHHh--cCCCEEEEEEECCCChhHHHHH-HHH--HHHHHHccCCcEEEEEECCC--CHHHHHHcCCCCCCEEEEEE
Confidence 35555422 4679999999999999999776 444 34444444468999999974 34689999999999998775
Q ss_pred CCCCccceeee-------eeecCCC-HHHHHHHHHHHH
Q 015165 254 PAANQRIALLQ-------QVEGPKS-PEEMLMILQKVI 283 (412)
Q Consensus 254 ~~~~~~~~vl~-------ri~G~~s-~~~ll~~L~~~i 283 (412)
. |..+ .+. ++.|..+ .++|...|...+
T Consensus 104 ~--G~~v-~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~ 138 (160)
T 2av4_A 104 R--NKHM-MIDLGTGNNNKINWPMNNKQEFIDIVETIF 138 (160)
T ss_dssp T--TEEE-EEECSSSCCSCBCSCCCCHHHHHHHHHHHH
T ss_pred C--CEEE-EEecCCCCcCeEEeecCCHHHHHHHHHHHH
Confidence 4 2111 124 7789877 888887776655
No 141
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.91 E-value=0.025 Score=42.90 Aligned_cols=44 Identities=27% Similarity=0.433 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPPP 48 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~~ 48 (412)
+-.|+|+.+|||+.|...-...|..++.||..||.-.-+.....
T Consensus 25 q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~ 68 (80)
T 1vdl_A 25 QTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT 68 (80)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence 44789999999999998899999999999999999988865543
No 142
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=95.91 E-value=0.033 Score=57.06 Aligned_cols=102 Identities=12% Similarity=0.152 Sum_probs=76.9
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCce
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPF 248 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~ 248 (412)
+-..+|.+++ +..++++|++++++|..|..+...+ +.+.+-+.. ++.+...|++.. ..++..|++..||.
T Consensus 19 l~~~~f~~~~----~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt 89 (504)
T 2b5e_A 19 LATDSFNEYI----QSHDLVLAEFFAPWCGHCKNMAPEY---VKAAETLVEKNITLAQIDCTEN--QDLCMEHNIPGFPS 89 (504)
T ss_dssp CCTTTHHHHH----TTCSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTTCEEEEEETTTC--HHHHHHTTCCSSSE
T ss_pred CCHHHHHHHH----hcCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhccCCeEEEEEECCCC--HHHHHhcCCCcCCE
Confidence 3456788876 4589999999999999999988433 455555655 588888888755 46889999999999
Q ss_pred EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 249 CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 249 l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+.++.. |. ...+.+..|..+.+.+.+.|...+
T Consensus 90 ~~~~~~--g~-~~~~~~~~G~~~~~~l~~~l~~~~ 121 (504)
T 2b5e_A 90 LKIFKN--SD-VNNSIDYEGPRTAEAIVQFMIKQS 121 (504)
T ss_dssp EEEEET--TC-TTCEEECCSCCSHHHHHHHHHHHT
T ss_pred EEEEeC--Cc-cccceeecCCCCHHHHHHHHHHhc
Confidence 988864 21 111446779999999988887665
No 143
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=95.89 E-value=0.041 Score=54.41 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=74.3
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh------cCeEEEecccCChhHHHHHhhCCCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN------ENFVSWGGSIRASEGFKMSNSLKAS 244 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~------~nfV~w~~dv~~~Eg~~va~~l~~~ 244 (412)
-..+|.+++. ..+++||+++.++|..|..+... | +.+.+-+. .++.+...|++.. ..++..|++.
T Consensus 11 ~~~~f~~~~~----~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~ 81 (382)
T 2r2j_A 11 DTENIDEILN----NADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQH--SDIAQRYRIS 81 (382)
T ss_dssp CTTTHHHHHH----HCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTC--HHHHHHTTCC
T ss_pred CHHHHHHHHh----cCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCcc--HHHHHhcCCC
Confidence 3456777663 57899999999999999988843 2 34555552 3488888887654 4688999999
Q ss_pred CCceEEEEeCCCCccceeee-eeecCCCHHHHHHHHHHHHHh
Q 015165 245 RYPFCAVVMPAANQRIALLQ-QVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~-ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.||.+.++.. | .++. ...|..+.+.+.+.+...+..
T Consensus 82 ~~Pt~~~f~~--G---~~~~~~~~G~~~~~~l~~~i~~~~~~ 118 (382)
T 2r2j_A 82 KYPTLKLFRN--G---MMMKREYRGQRSVKALADYIRQQKSD 118 (382)
T ss_dssp EESEEEEEET--T---EEEEEECCSCCSHHHHHHHHHHHHSC
T ss_pred cCCEEEEEeC--C---cEeeeeecCcchHHHHHHHHHHhccC
Confidence 9999987753 2 2334 367999999999888877643
No 144
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=95.88 E-value=0.027 Score=55.74 Aligned_cols=95 Identities=4% Similarity=-0.007 Sum_probs=68.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCC------hh-------------------HHHHH
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRA------SE-------------------GFKMS 238 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~------~E-------------------g~~va 238 (412)
.+|++||++..++|..|......+ ..+.+-+. .++.+.+.+++. ++ ...++
T Consensus 81 ~GK~vLl~F~atwC~~C~~~~p~L---~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~ 157 (352)
T 2hyx_A 81 RGKVVLIDFWAYSCINCQRAIPHV---VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATW 157 (352)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHH---HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHH
Confidence 479999999999998887776332 22333333 368888877642 22 13577
Q ss_pred hhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 239 NSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 239 ~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
+.|++..+|.+.||+.. ..|+.+..|..+.+++...|...+...
T Consensus 158 ~~ygV~~~Pt~~lID~~----G~Iv~~~~G~~~~~~l~~~I~~lL~e~ 201 (352)
T 2hyx_A 158 TNYRNRYWPAEYLIDAT----GTVRHIKFGEGDYNVTETLVRQLLNDA 201 (352)
T ss_dssp HHTTCCEESEEEEECTT----SBEEEEEESBCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCccCEEEEEeCC----CeEEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 88999999999999874 356778889999988888887776543
No 145
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=95.83 E-value=0.016 Score=58.87 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=75.3
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
..+|.+++ ......++++|+++.++|..|..+...+ +.+.+-+...+.+...|++. ...++..|++..||.+.+
T Consensus 8 ~~~f~~~i-~~~~~~~~~lv~F~a~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~--~~~l~~~~~v~~~Ptl~~ 81 (481)
T 3f8u_A 8 DDNFESRI-SDTGSAGLMLVEFFAPWCGHAKRLAPEY---EAAATRLKGIVPLAKVDCTA--NTNTCNKYGVSGYPTLKI 81 (481)
T ss_dssp TTTHHHHT-TCCSSSSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCCEEEEETTT--CHHHHHHTTCCEESEEEE
T ss_pred HHHHHHHH-HhCCCCCeEEEEEECCCCHHHHHhHHHH---HHHHHHhcCceEEEEEECCC--CHHHHHhcCCCCCCEEEE
Confidence 34566666 2223449999999999999999988433 45555566667777778765 346889999999999888
Q ss_pred EeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 252 VMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+-. | ..+.+..|..+.+.+.+.|...+.
T Consensus 82 ~~~--g---~~~~~~~G~~~~~~l~~~~~~~~~ 109 (481)
T 3f8u_A 82 FRD--G---EEAGAYDGPRTADGIVSHLKKQAG 109 (481)
T ss_dssp EET--T---EEEEECCSCSSHHHHHHHHHHHTS
T ss_pred EeC--C---ceeeeecCccCHHHHHHHHHhhcc
Confidence 853 2 345678899999999888876654
No 146
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=95.77 E-value=0.081 Score=47.88 Aligned_cols=98 Identities=12% Similarity=0.139 Sum_probs=69.5
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCc
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYP 247 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P 247 (412)
-..+|.+++ ...++++|+++.++|..|..+...+ ..+.+-+.. ++.+...|+++.. .++..|++..+|
T Consensus 136 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~a~~~~~~~~~v~~~~vd~~~~~--~l~~~~~v~~~P 206 (241)
T 3idv_A 136 TKENFDEVV----NDADIILVEFYAPWCGHCKKLAPEY---EKAAKELSKRSPPIPLAKVDATAET--DLAKRFDVSGYP 206 (241)
T ss_dssp CTTTHHHHH----HHCSEEEEEEECTTCTGGGGTHHHH---HHHHHHHHTSSSCCCEEEEETTTCH--HHHHHTTCCSSS
T ss_pred cHHHHHHhh----ccCCeEEEEEECCCCHHHHHhHHHH---HHHHHHHhccCCcEEEEEEECCCCH--HHHHHcCCcccC
Confidence 445677666 4568999999999999998876332 234443433 3777777876543 578999999999
Q ss_pred eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 248 FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 248 ~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.+.++.. | ..+. ..|..+.+.+++.|....
T Consensus 207 t~~~~~~--g---~~~~-~~g~~~~~~l~~~l~~~~ 236 (241)
T 3idv_A 207 TLKIFRK--G---RPYD-YNGPREKYGIVDYMIEQS 236 (241)
T ss_dssp EEEEEET--T---EEEE-CCSCCSHHHHHHHHHHHT
T ss_pred EEEEEEC--C---eEEE-ecCCCCHHHHHHHHHhhh
Confidence 9988864 3 2233 679999999888876543
No 147
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=95.75 E-value=0.026 Score=46.33 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=49.7
Q ss_pred cCcEEEEEEeCC-------CCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCCh-----hHHHHHhhCCCCCCceE
Q 015165 185 VFKLLFVYLHSP-------DHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRAS-----EGFKMSNSLKASRYPFC 249 (412)
Q Consensus 185 e~K~LlVyLh~~-------~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~-----Eg~~va~~l~~~~~P~l 249 (412)
.+|+++|+++++ +|..|..+. +.+.++.+ .++.+...|+.+. +...++..|++..+|.+
T Consensus 23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~------p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~ 96 (123)
T 1wou_A 23 NGKTIFAYFTGSKDAGGKSWCPDCVQAE------PVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTL 96 (123)
T ss_dssp TTSEEEEEEECCBCTTCCBSCHHHHHHH------HHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEE
T ss_pred CCCEEEEEEEccCCCCCCCcCHHHHHhh------HHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEE
Confidence 489999999999 999999887 34445444 3789999999542 23357778999999999
Q ss_pred EEEeC
Q 015165 250 AVVMP 254 (412)
Q Consensus 250 ~lI~~ 254 (412)
.++..
T Consensus 97 ~~~~~ 101 (123)
T 1wou_A 97 LKYGT 101 (123)
T ss_dssp EETTS
T ss_pred EEEcC
Confidence 88865
No 148
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=95.69 E-value=0.021 Score=47.56 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=56.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCCh-hHH---------------------HHHhhC
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRAS-EGF---------------------KMSNSL 241 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~-Eg~---------------------~va~~l 241 (412)
.+|+++|++.+++|..|......+-.++.+.+.+. .++.+++.++.+. +.+ .++..|
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 36999999999999988888755443344555453 4788888877654 222 257789
Q ss_pred CCCCCceEEEEeCCCCccceeeeeeec
Q 015165 242 KASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 242 ~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
++..+|.+.||+.. ..|+.+..|
T Consensus 110 ~v~~~P~~~lid~~----G~i~~~~~~ 132 (142)
T 3eur_A 110 DLRAIPTLYLLDKN----KTVLLKDAT 132 (142)
T ss_dssp CCTTCSEEEEECTT----CBEEEEEEC
T ss_pred CCCcCCeEEEECCC----CcEEecCCC
Confidence 99999999999974 245655443
No 149
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=95.63 E-value=0.035 Score=47.40 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=56.0
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeCCC--CCChhHHHhhcCCChHHHHHHh--cCeE--EEecccCChhHHHHHhhCCCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVN--ENFV--SWGGSIRASEGFKMSNSLKAS 244 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~~~--~~~s~~F~r~vL~~~~v~~~l~--~nfV--~w~~dv~~~Eg~~va~~l~~~ 244 (412)
-..+|++.+.. .+..+|++..++ |..|..+. |.+.++.+ .++. +...|++ +.-.++..|++.
T Consensus 23 ~~~~f~~~i~~----~~~~vv~f~~~~~~C~~C~~l~------P~l~~la~~~~~v~~~~~~Vd~d--~~~~la~~~~V~ 90 (142)
T 2es7_A 23 EASTVDDWIKR----VGDGVILLSSDPRRTPEVSDNP------VMIAELLREFPQFDWQVAVADLE--QSEAIGDRFNVR 90 (142)
T ss_dssp CCC------------CCSEEEEECCCSCC----CCHH------HHHHHHHHTCTTSCCEEEEECHH--HHHHHHHTTTCC
T ss_pred ccccHHHHHHh----CCCEEEEEECCCCCCccHHHHH------HHHHHHHHHhcccceeEEEEECC--CCHHHHHhcCCC
Confidence 34567777642 233666776655 77777665 33333333 3566 7888875 455788999999
Q ss_pred CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.+|.+.++ . .| .++.++.|..+.++|.+.|...+..
T Consensus 91 ~iPT~~~f-k-~G---~~v~~~~G~~~~~~l~~~i~~~l~~ 126 (142)
T 2es7_A 91 RFPATLVF-T-DG---KLRGALSGIHPWAELLTLMRSIVDT 126 (142)
T ss_dssp SSSEEEEE-S-CC-------CEESCCCHHHHHHHHHHHHC-
T ss_pred cCCeEEEE-e-CC---EEEEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999988 3 23 4567888999988888888776643
No 150
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=95.61 E-value=0.015 Score=41.56 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
.+++|.+++++ |+.|.+.|+..|..++||++.||.-.|.+.
T Consensus 11 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 11 FQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 46789999997 886668999999999999999999988753
No 151
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.61 E-value=0.012 Score=45.08 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..+
T Consensus 29 ~ee~I~~L~eM-GF~r-~~a~~AL~~~~~nve~Ave~Ll~~~~p 70 (73)
T 1vg5_A 29 SEEQIQKLVAM-GFDR-TQVEVALAAADDDLTVAVEILMSQSGP 70 (73)
T ss_dssp CHHHHHHHHTT-TCCH-HHHHHHHHHHTSCHHHHHHHHHTCSCS
T ss_pred cHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 57899999996 8877 899999999999999999999987654
No 152
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=95.60 E-value=0.018 Score=40.98 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+++++ |+.+.+.|+..|..++||++.|+.-.|.+
T Consensus 12 ~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 12 FQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 46889999997 89666899999999999999999988764
No 153
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=95.60 E-value=0.082 Score=43.71 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=65.8
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhH--HHHHhhCCCCC-CceEEEEeC
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEG--FKMSNSLKASR-YPFCAVVMP 254 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg--~~va~~l~~~~-~P~l~lI~~ 254 (412)
++...++.++++|+.|+.+|..|.... +.+-++.+ .++-++..||...-. -.+|..|++.. -|.++++-.
T Consensus 17 f~~ii~~~~~vvi~khatwCgpc~~~~------~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~ 90 (112)
T 3iv4_A 17 FEQVIEENKYVFVLKHSETCPISANAY------DQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVN 90 (112)
T ss_dssp HHHHHHHCSEEEEEEECTTCHHHHHHH------HHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEET
T ss_pred HHHHHhcCCCEEEEEECCcCHhHHHHH------HHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEEC
Confidence 444444599999999999999999777 45555554 478888889975443 35889999995 999998864
Q ss_pred CCCccceeeeeeecCCCHHHHHHH
Q 015165 255 AANQRIALLQQVEGPKSPEEMLMI 278 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ll~~ 278 (412)
| -.|.....|.++.+.|...
T Consensus 91 --G--~~v~~~SH~~I~~~~l~~~ 110 (112)
T 3iv4_A 91 --G--EMVWNRDHGDINVSSLAQA 110 (112)
T ss_dssp --T--EEEEEEEGGGCSHHHHHHH
T ss_pred --C--EEEEEeeccccCHHHHHHh
Confidence 2 2455556788888766543
No 154
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.55 E-value=0.016 Score=42.36 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+++++ |+.|.+.++..|..++||++.||...|.+
T Consensus 17 ~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 17 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp THHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45789999998 88886788999999999999999998864
No 155
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.44 E-value=0.011 Score=41.48 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+.+++ |++. +.|+..|..++||++.|+.-.|.+
T Consensus 8 ~~~~i~~L~~M-GF~~-~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 8 YETMLTEIMSM-GYER-ERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHT-TCCH-HHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 57889999988 8866 899999999999999999998875
No 156
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=95.32 E-value=0.017 Score=48.00 Aligned_cols=71 Identities=15% Similarity=0.095 Sum_probs=51.5
Q ss_pred HHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh----------------------HH
Q 015165 180 QRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE----------------------GF 235 (412)
Q Consensus 180 ~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E----------------------g~ 235 (412)
..+.-.+|+++|++++++|..|..+...+ ..+.+-+. .++.+.+.++++.+ ..
T Consensus 22 ~l~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (144)
T 1o73_A 22 SLGSLVGKTVFLYFSASWCPPCRGFTPVL---AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVS 98 (144)
T ss_dssp CSGGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHH
T ss_pred cHHHhCCCEEEEEEECcCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHH
Confidence 33445689999999999999888777432 23333343 46777777776532 45
Q ss_pred HHHhhCCCCCCceEEEEe
Q 015165 236 KMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~ 253 (412)
.+++.|++..+|.+.+|.
T Consensus 99 ~~~~~~~v~~~Pt~~lid 116 (144)
T 1o73_A 99 ELGKTFGVESIPTLITIN 116 (144)
T ss_dssp HHHHHHTCCSSSEEEEEE
T ss_pred HHHHHcCCCCCCEEEEEE
Confidence 678899999999999999
No 157
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=95.26 E-value=0.018 Score=41.92 Aligned_cols=40 Identities=25% Similarity=0.401 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
+.+.|.+|...||..- +=+...|+.++||++.|+..|-..
T Consensus 6 q~~mv~~~s~~T~Mn~-e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 6 QLELLNKLHLETKLNA-EYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHHHCSCH-HHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 6788999999999776 789999999999999999999774
No 158
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=95.24 E-value=0.024 Score=41.67 Aligned_cols=38 Identities=34% Similarity=0.647 Sum_probs=34.6
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
+.+..|..|.--||++. ..|+++|+--||||-.|++.|
T Consensus 16 dmdavls~fvrstgaep-gLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEP-GLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp CHHHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCc-chhHHhhccCCccHhHHhhhH
Confidence 45678899999999776 899999999999999999998
No 159
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=95.22 E-value=0.073 Score=48.77 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=58.1
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.|.+++..+ ..+++++|+++.++|..|..+.. .+.++-.. ++.|...|++ .-.++..|++..+|.+++
T Consensus 109 ~f~~~v~~~-~~~k~vvV~F~a~wC~~C~~l~p------~l~~la~~~~~v~f~~vd~~---~~~l~~~~~i~~~PTl~~ 178 (217)
T 2trc_P 109 QFLETIEKE-QKVTTIVVNIYEDGVRGCDALNS------SLECLAAEYPMVKFCKIRAS---NTGAGDRFSSDVLPTLLV 178 (217)
T ss_dssp HHHHHHHHS-CTTCEEEEEEECTTSTTHHHHHH------HHHHHHTTCTTSEEEEEEHH---HHTCSTTSCGGGCSEEEE
T ss_pred HHHHHHHhc-CCCcEEEEEEECCCCccHHHHHH------HHHHHHHHCCCeEEEEEECC---cHHHHHHCCCCCCCEEEE
Confidence 455555432 23599999999999999998873 33444333 5778888876 345778899999999888
Q ss_pred EeCCCCccceeeeeeecCCC
Q 015165 252 VMPAANQRIALLQQVEGPKS 271 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~s 271 (412)
+.. | .++.++.|..+
T Consensus 179 ~~~--G---~~v~~~~G~~~ 193 (217)
T 2trc_P 179 YKG--G---ELISNFISVAE 193 (217)
T ss_dssp EET--T---EEEEEETTGGG
T ss_pred EEC--C---EEEEEEeCCcc
Confidence 752 2 45667777655
No 160
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=95.21 E-value=0.019 Score=39.01 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+.+++ |++. +.|+..|..++||++.|+.-.|.+
T Consensus 4 ~e~~i~~L~~M-GF~~-~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 4 KSLAVEELSGM-GFTE-EEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTT-TSCH-HHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCcCHHHHHHHHHcC
Confidence 46889999996 8887 899999999999999999887764
No 161
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=95.18 E-value=0.18 Score=45.47 Aligned_cols=113 Identities=9% Similarity=0.049 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccC
Q 015165 153 MEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIR 230 (412)
Q Consensus 153 ~~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~ 230 (412)
..|+..+...-|. ...+-..+|+..+ ....++++|++++++|..|..+. +.+.++-. .++.+...|++
T Consensus 107 ~~~~~~~~~~~~~-~~~l~~~~~~~~~---~~~~~~~~v~F~a~wC~~C~~~~------~~~~~~~~~~~~v~~~~vd~~ 176 (229)
T 2ywm_A 107 TTLINGIFHVSQR-KPQLSEKTLELLQ---VVDIPIEIWVFVTTSCGYCPSAA------VMAWDFALANDYITSKVIDAS 176 (229)
T ss_dssp HHHHHHHHHHHTT-CCSCCHHHHHHHT---TCCSCEEEEEEECTTCTTHHHHH------HHHHHHHHHCTTEEEEEEEGG
T ss_pred HHHHHHHHhccCC-ccCCCHHHHHHHH---hcCCCeEEEEEECCCCcchHHHH------HHHHHHHHHCCCeEEEEEECC
Confidence 4455554432232 1233333444332 24456668999999999999887 33333333 36777777876
Q ss_pred ChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 231 ASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 231 ~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
. ...++..|++..+|.+.+ .| . +.+..|..+.++|.+.|...+..
T Consensus 177 ~--~~~l~~~~~v~~~Pt~~~----~G-~---~~~~~G~~~~~~l~~~l~~~~~~ 221 (229)
T 2ywm_A 177 E--NQDLAEQFQVVGVPKIVI----NK-G---VAEFVGAQPENAFLGYIMAVYEK 221 (229)
T ss_dssp G--CHHHHHHTTCCSSSEEEE----GG-G---TEEEESCCCHHHHHHHHHHHHHH
T ss_pred C--CHHHHHHcCCcccCEEEE----CC-E---EEEeeCCCCHHHHHHHHHHHhhh
Confidence 4 335788999999999887 22 2 34577999999888888766643
No 162
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=95.16 E-value=0.056 Score=50.71 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=56.6
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
.|.+++..+ ...++++|+++.++|..|..+. +.+.++-.. ++.|...|++. ..++..|++..+|.+++
T Consensus 122 ~f~~~v~~~-~~~k~VvV~Fya~wC~~Ck~l~------p~l~~La~~~~~v~f~kVd~d~---~~l~~~~~I~~~PTll~ 191 (245)
T 1a0r_P 122 QFLETIEKE-QKITTIVVHIYEDGIKGCDALN------SSLICLAAEYPMVKFCKIKASN---TGAGDRFSSDVLPTLLV 191 (245)
T ss_dssp HHHHHHHSS-CTTCEEEEEEECTTSTTHHHHH------HHHHHHHHHCTTSEEEEEEHHH---HCCTTSSCTTTCSEEEE
T ss_pred HHHHHHHHh-cCCCEEEEEEECCCChHHHHHH------HHHHHHHHHCCCCEEEEEeCCc---HHHHHHCCCCCCCEEEE
Confidence 344444322 2489999999999999999887 333443332 57788888754 34778899999999877
Q ss_pred EeCCCCccceeeeeeecCC
Q 015165 252 VMPAANQRIALLQQVEGPK 270 (412)
Q Consensus 252 I~~~~~~~~~vl~ri~G~~ 270 (412)
+.. | .++.++.|..
T Consensus 192 ~~~--G---~~v~~~vG~~ 205 (245)
T 1a0r_P 192 YKG--G---ELLSNFISVT 205 (245)
T ss_dssp EET--T---EEEEEETTGG
T ss_pred EEC--C---EEEEEEeCCc
Confidence 752 2 4566666753
No 163
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=95.15 E-value=0.066 Score=44.68 Aligned_cols=69 Identities=19% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh----------------------HHHH
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE----------------------GFKM 237 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E----------------------g~~v 237 (412)
+.-.+|+++||+.+++|..|..+...+ ..+.+-+. .++.+.+.++++.+ ...+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQL---IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHHH---HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 344689999999999999888777433 23444444 46777777776532 4568
Q ss_pred HhhCCCCCCceEEEEe
Q 015165 238 SNSLKASRYPFCAVVM 253 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~ 253 (412)
++.|++..+|.+.||.
T Consensus 101 ~~~~~v~~~Pt~~lid 116 (146)
T 1o8x_A 101 SKHFNVESIPTLIGVD 116 (146)
T ss_dssp HHHTTCCSSSEEEEEE
T ss_pred HHHhCCCCCCEEEEEE
Confidence 8899999999999999
No 164
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=95.10 E-value=0.071 Score=44.29 Aligned_cols=71 Identities=17% Similarity=0.056 Sum_probs=51.9
Q ss_pred HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh----------------------HHHH
Q 015165 182 SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE----------------------GFKM 237 (412)
Q Consensus 182 Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E----------------------g~~v 237 (412)
+.-.+|+++||+..++|..|..+...+ ..+.+-+. .++.+.+.++++.. ...+
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (144)
T 1i5g_A 24 PSLAGKTVFFYFSASWCPPSRAFTPQL---IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL 100 (144)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence 334579999999999999888777433 23444444 47777777776432 4568
Q ss_pred HhhCCCCCCceEEEEe-CC
Q 015165 238 SNSLKASRYPFCAVVM-PA 255 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~-~~ 255 (412)
++.|++..+|.+.||. ..
T Consensus 101 ~~~~~v~~~P~~~lid~~~ 119 (144)
T 1i5g_A 101 TTGFDVKSIPTLVGVEADS 119 (144)
T ss_dssp HHHTTCCSSSEEEEEETTT
T ss_pred HHHcCCCCCCEEEEEECCC
Confidence 8899999999999999 53
No 165
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=95.09 E-value=0.11 Score=51.02 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=72.8
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcC----CChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCC
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTL----CNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKAS 244 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL----~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~ 244 (412)
.-..+|.+++ +..+++||+++.|+|..| .+|..+- .-+.+.+.+.. ++.+...|++.. ..++..|++.
T Consensus 18 lt~~~f~~~i----~~~~~vlV~FyApWC~~~-~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~V~ 90 (367)
T 3us3_A 18 VNAKNYKNVF----KKYEVLALLYHEPPEDDK-ASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD--AAVAKKLGLT 90 (367)
T ss_dssp CCTTTHHHHH----HHCSEEEEEEECCCCSSH-HHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT--HHHHHHHTCC
T ss_pred CCHHHHHHHH----hhCCeEEEEEECCCchhH-HHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc--HHHHHHcCCC
Confidence 3456788877 347999999999999775 5664221 01344555554 588888888753 4689999999
Q ss_pred CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.||.+.++-. |. .+ ...|..+++.+++.+...+.
T Consensus 91 ~~PTl~~f~~--G~---~~-~y~G~~~~~~i~~~i~~~~~ 124 (367)
T 3us3_A 91 EEDSIYVFKE--DE---VI-EYDGEFSADTLVEFLLDVLE 124 (367)
T ss_dssp STTEEEEEET--TE---EE-ECCSCCSHHHHHHHHHHHHS
T ss_pred cCceEEEEEC--Cc---EE-EeCCCCCHHHHHHHHHHhcC
Confidence 9999998874 31 22 56799999999888876653
No 166
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=95.08 E-value=0.01 Score=49.56 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=55.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc----CeEEEecccCChhH------------------------HH
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE----NFVSWGGSIRASEG------------------------FK 236 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~----nfV~w~~dv~~~Eg------------------------~~ 236 (412)
.+|+++|++..++|..|.... +.+.++.++ ++.+.+.+++.... ..
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARN------VQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHH------HHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHH------HHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 579999999999988877665 455555443 57777777663321 25
Q ss_pred HHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 237 MSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 237 va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
++..|++..+|...||++. | .|+.+. .+.+++-+.|
T Consensus 105 ~~~~~~v~~~P~~~lid~~-G---~i~~~~---~~~~~l~~~l 140 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLINDE-G---VIIAAN---VTPEKLTEIL 140 (143)
T ss_dssp HHHHTTGGGCCCEEEECTT-S---BEEEES---CCHHHHHHHH
T ss_pred HHHHcCCCCCCcEEEECCC-C---EEEEcc---CCHHHHHHHH
Confidence 6778999999999999974 2 455543 3455544443
No 167
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=95.05 E-value=0.044 Score=48.13 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=61.7
Q ss_pred cCc-EEEEEEeCCCCCChhHHHhhcCCChHHHHHH----hcCeEEEecccCC--------hh------------------
Q 015165 185 VFK-LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRA--------SE------------------ 233 (412)
Q Consensus 185 e~K-~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l----~~nfV~w~~dv~~--------~E------------------ 233 (412)
.+| +++|++.+++|..|.... +.+.++. +.++.+++.+++. .+
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 117 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQ------HELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYD 117 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHH------HHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEeCCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEEC
Confidence 455 589999998887776655 3333333 2357777777742 21
Q ss_pred -HHHHHhhCCCCCCceEEEEeCCCCccceeeee---------eecCCCHHHHHHHHHHHHHh
Q 015165 234 -GFKMSNSLKASRYPFCAVVMPAANQRIALLQQ---------VEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 234 -g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~r---------i~G~~s~~~ll~~L~~~ie~ 285 (412)
...++..|++..+|.++||++.. .++.+ ..|..+.+++...|...+..
T Consensus 118 ~~~~~~~~~~v~~~P~~~lid~~G----~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~ 175 (196)
T 2ywi_A 118 ETQEVAKAYDAACTPDFYIFDRDL----KCVYRGQLDDSRPNNGIPVTGESIRAALDALLEG 175 (196)
T ss_dssp SSCHHHHHHTCCEESEEEEEETTC----BEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHT
T ss_pred CchHHHHHhCCCCCCeEEEEcCCC----eEEEccccCcccccccCccCHHHHHHHHHHHHcC
Confidence 23567789999999999998742 34444 45777888988888877654
No 168
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=94.97 E-value=0.053 Score=44.87 Aligned_cols=82 Identities=7% Similarity=0.016 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
...|.+.+..+ ...++++|+++.++|..|..+. +.+.++-++ ++.|...|+++. +..|++...|.+
T Consensus 10 ~~~f~~~v~~~-~~~~~vvv~F~a~wc~~C~~~~------p~l~~la~~~~~v~f~kvd~d~~-----~~~~~v~~~PT~ 77 (118)
T 3evi_A 10 GNQYVNEVTNA-EEDVWVIIHLYRSSIPMCLLVN------QHLSLLARKFPETKFVKAIVNSC-----IQHYHDNCLPTI 77 (118)
T ss_dssp GGGHHHHTTTC-CTTCEEEEEEECTTSHHHHHHH------HHHHHHHHHCTTSEEEEEEGGGT-----STTCCGGGCSEE
T ss_pred HHHHHHHHHhc-CCCCeEEEEEeCCCChHHHHHH------HHHHHHHHHCCCCEEEEEEhHHh-----HHHCCCCCCCEE
Confidence 34555555322 1245999999999999999877 333343332 567788888753 678999999998
Q ss_pred EEEeCCCCccceeeeeeecCC
Q 015165 250 AVVMPAANQRIALLQQVEGPK 270 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~ 270 (412)
++.-. ..++.++.|..
T Consensus 78 ~~fk~-----G~~v~~~~G~~ 93 (118)
T 3evi_A 78 FVYKN-----GQIEAKFIGII 93 (118)
T ss_dssp EEEET-----TEEEEEEESTT
T ss_pred EEEEC-----CEEEEEEeChh
Confidence 88764 25667777764
No 169
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=94.89 E-value=0.06 Score=54.61 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=72.8
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|.+++ ....|.++|+++.++|..|..+...+ ..+.+.+.. ++++...|++.. .++..|++..||.+.
T Consensus 360 ~~~~~~~---~~~~k~vlv~f~a~wC~~C~~~~p~~---~~l~~~~~~~~~v~~~~id~~~~---~~~~~~~v~~~Pt~~ 430 (481)
T 3f8u_A 360 ENFDEIV---NNENKDVLIEFYAPWCGHCKNLEPKY---KELGEKLSKDPNIVIAKMDATAN---DVPSPYEVRGFPTIY 430 (481)
T ss_dssp TTHHHHH---TCTTCEEEEEEECTTBHHHHHHHHHH---HHHHHHTTTCSSEEEEEEETTSS---CCCTTCCCCSSSEEE
T ss_pred cCHHHHh---hcCCCcEEEEEecCcChhHHHhhHHH---HHHHHHhccCCCEEEEEEECCch---hhHhhCCCcccCEEE
Confidence 4566554 44689999999999999999888433 455555554 689999998765 577789999999998
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++... + ... +.+..|..+.+.|++.|....
T Consensus 431 ~~~~~-~-~~~-~~~~~G~~~~~~l~~~l~~~~ 460 (481)
T 3f8u_A 431 FSPAN-K-KLN-PKKYEGGRELSDFISYLQREA 460 (481)
T ss_dssp EECTT-C-TTS-CEECCSCCSHHHHHHHHHHHC
T ss_pred EEeCC-C-eEe-eeEeCCCCCHHHHHHHHHHhc
Confidence 87652 2 222 345679999998888876544
No 170
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=94.85 E-value=0.35 Score=43.33 Aligned_cols=92 Identities=10% Similarity=0.133 Sum_probs=64.5
Q ss_pred hcCcEEEEEEeCC-CCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCcccee
Q 015165 184 SVFKLLFVYLHSP-DHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIAL 262 (412)
Q Consensus 184 ~e~K~LlVyLh~~-~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~v 262 (412)
.+.+..+|+++.+ +|..|..+.. +| +++.+. ..++.+...|+++++...++..|++..+|.+.++.. +. .+
T Consensus 20 ~~~~v~lv~f~~~~~C~~C~~~~~-~~--~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~--g~--~~ 91 (226)
T 1a8l_A 20 MVNPVKLIVFVRKDHCQYCDQLKQ-LV--QELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQD--GK--DF 91 (226)
T ss_dssp CCSCEEEEEEECSSSCTTHHHHHH-HH--HHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEET--TB--CC
T ss_pred cCCCeEEEEEecCCCCchhHHHHH-HH--HHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcC--Cc--ee
Confidence 3457788999999 9999987763 23 233332 347888889998877889999999999999988843 21 12
Q ss_pred eeeeecCCCHHHHHHHHHHHH
Q 015165 263 LQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 263 l~ri~G~~s~~~ll~~L~~~i 283 (412)
..+..|..+.+.+.+.+...+
T Consensus 92 ~~~~~G~~~~~~l~~~l~~~l 112 (226)
T 1a8l_A 92 GVRYFGLPAGHEFAAFLEDIV 112 (226)
T ss_dssp SEEEESCCCTTHHHHHHHHHH
T ss_pred eEEEeccCcHHHHHHHHHHHH
Confidence 234567777766665555443
No 171
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=94.79 E-value=0.15 Score=37.36 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=51.6
Q ss_pred EEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeec
Q 015165 189 LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 189 LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
+.|++++++|..|..+...+ +++.+-++.++.+...| ...++..|++..+|.+.+ .| .++.+ |
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~-----~~~~~~~~~v~~~Pt~~~----~G---~~~~~--G 64 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK-----EMDQILEAGLTALPGLAV----DG---ELKIM--G 64 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC-----SHHHHHHHTCSSSSCEEE----TT---EEEEC--S
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec-----CHHHHHHCCCCcCCEEEE----CC---EEEEc--C
Confidence 45888899999999888443 34555455577777777 346788999999999887 22 34444 8
Q ss_pred CC-CHHHHHHH
Q 015165 269 PK-SPEEMLMI 278 (412)
Q Consensus 269 ~~-s~~~ll~~ 278 (412)
.. +.+++.+.
T Consensus 65 ~~~~~~~l~~~ 75 (77)
T 1ilo_A 65 RVASKEEIKKI 75 (77)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 86 87777654
No 172
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=94.79 E-value=0.081 Score=45.67 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=51.5
Q ss_pred HhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhH----------------------HHHH
Q 015165 183 RSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEG----------------------FKMS 238 (412)
Q Consensus 183 k~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg----------------------~~va 238 (412)
.-.+|++|||+..++|..|..+...+ ..+.+-+.+ ++.+.+.++++... ..++
T Consensus 45 ~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 121 (165)
T 3s9f_A 45 SLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALT 121 (165)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHH
T ss_pred HcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHH
Confidence 33579999999999999888877433 234433443 67777777665532 5788
Q ss_pred hhCCCCCCceEEEEeCC
Q 015165 239 NSLKASRYPFCAVVMPA 255 (412)
Q Consensus 239 ~~l~~~~~P~l~lI~~~ 255 (412)
+.|++..+|.++||.+.
T Consensus 122 ~~~~v~~~Pt~~lid~~ 138 (165)
T 3s9f_A 122 KKYSVESIPTLIGLNAD 138 (165)
T ss_dssp HHTTCCSSSEEEEEETT
T ss_pred HHcCCCCCCEEEEEeCC
Confidence 89999999999999974
No 173
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=94.79 E-value=0.075 Score=44.97 Aligned_cols=78 Identities=6% Similarity=-0.158 Sum_probs=52.6
Q ss_pred cCc-EEEEEEe-CCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCChh---------------------HHHH
Q 015165 185 VFK-LLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASE---------------------GFKM 237 (412)
Q Consensus 185 e~K-~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~E---------------------g~~v 237 (412)
.+| +++|++. +++|..|.... +.+.++.+ .++.+++.++++++ ...+
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~------~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 107 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGEL------DQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAV 107 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHH------HHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHH
T ss_pred cCCCCEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcChHH
Confidence 355 8999997 88888776655 34444433 25777777766533 3457
Q ss_pred HhhCCCC----CCc--eEEEEeCCCCccceeeeeeecCCCH
Q 015165 238 SNSLKAS----RYP--FCAVVMPAANQRIALLQQVEGPKSP 272 (412)
Q Consensus 238 a~~l~~~----~~P--~l~lI~~~~~~~~~vl~ri~G~~s~ 272 (412)
+..|++. .+| ...||++. ..|+.+..|..+.
T Consensus 108 ~~~~~v~~~~~~~p~~~~~lid~~----G~i~~~~~g~~~~ 144 (160)
T 1xvw_A 108 SQAYGVFNEQAGIANRGTFVVDRS----GIIRFAEMKQPGE 144 (160)
T ss_dssp HHHTTCEETTTTEECSEEEEECTT----SBEEEEEECCTTC
T ss_pred HHHcCCccccCCCeeeeEEEECCC----CeEEEEEecCCCC
Confidence 7888888 889 88888874 3566667776543
No 174
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=94.77 E-value=0.16 Score=44.86 Aligned_cols=92 Identities=14% Similarity=0.022 Sum_probs=61.9
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChh-----------------------HHHHHh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-----------------------GFKMSN 239 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~E-----------------------g~~va~ 239 (412)
.+|+++||+. ..+|..|......+ ..+.+-+. .++.+++.++++.+ ...+++
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 120 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAAF---SKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQ 120 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHHH
Confidence 3689999999 99999988766322 12222222 36777777776532 124567
Q ss_pred hCCCC-----CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHHH
Q 015165 240 SLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (412)
Q Consensus 240 ~l~~~-----~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~i 283 (412)
.|++. .+|.++||++. ..|+.+..|.. ++++++..|....
T Consensus 121 ~~~v~~~~g~~~P~~~lid~~----G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 169 (195)
T 2bmx_A 121 AAGVLNADGVADRVTFIVDPN----NEIQFVSATAGSVGRNVDEVLRVLDALQ 169 (195)
T ss_dssp HHTCBCTTSSBCEEEEEECTT----SBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HhCCcccCCCccceEEEEcCC----CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 78888 89999999874 35666666765 6777777776554
No 175
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=94.71 E-value=0.09 Score=51.11 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=68.9
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHHhhCCCCCCceEE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMSNSLKASRYPFCA 250 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~ 250 (412)
.+|.+.+ ....|.++|+++.++|..|..+... | ..+.+.+.. ++++...|.+..+ +..|++..||.+.
T Consensus 257 ~~f~~~~---~~~~k~~lv~f~a~wC~~C~~~~p~-~--~~la~~~~~~~~v~~~~vd~~~~~----~~~~~v~~~Pt~~ 326 (361)
T 3uem_A 257 KNFEDVA---FDEKKNVFVEFYAPWCGHCKQLAPI-W--DKLGETYKDHENIVIAKMDSTANE----VEAVKVHSFPTLK 326 (361)
T ss_dssp TTHHHHH---TCTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTCSSEEEEEEETTTCB----CSSCCCCSSSEEE
T ss_pred Cchhhhc---ccCCCcEEEEEecCcCHhHHHHHHH-H--HHHHHHhccCCcEEEEEEECCccc----hhhcCCcccCeEE
Confidence 4566554 4568999999999999999988733 2 344444544 5888888887665 5679999999999
Q ss_pred EEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 251 VVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 251 lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
++....+ ..+.+..|..+.+.|++.|.
T Consensus 327 ~~~~~~~---~~~~~~~G~~~~~~l~~~l~ 353 (361)
T 3uem_A 327 FFPASAD---RTVIDYNGERTLDGFKKFLE 353 (361)
T ss_dssp EECSSSS---CCCEECCSCSSHHHHHHHHT
T ss_pred EEECCCC---cceeEecCCCCHHHHHHHHH
Confidence 9964222 23345679899888877664
No 176
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=94.70 E-value=0.037 Score=44.69 Aligned_cols=86 Identities=10% Similarity=-0.002 Sum_probs=57.9
Q ss_pred HHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh--hHHHHHhhCCCCCCceEEEEeC
Q 015165 177 DALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS--EGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 177 eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~--Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
+++..|+...|..+|++..++|..|..+. .+| .++- +.+-...+|+... +...++..|++..+|.+.+
T Consensus 3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~-p~~-----~~~a-~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i--- 72 (106)
T 3kp8_A 3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQK-ELF-----GAAF-DQVPYVECSPNGPGTPQAQECTEAGITSYPTWII--- 72 (106)
T ss_dssp HHHHHHHHHHHHTCEEEECTTCHHHHHHH-HHH-----GGGG-GGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEE---
T ss_pred HhhHHHHhcCCCEEEEEECCCCHHHHHHH-HHH-----HHHH-HhCCEEEEecccccchhHHHHHHcCCeEeCEEEE---
Confidence 45666777778889999999999999886 222 2222 2222334554433 4567899999999999666
Q ss_pred CCCccceeeeeeecCCCHHHHHHHH
Q 015165 255 AANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
.|. .+.|..+.++|...+
T Consensus 73 -~G~------~~~G~~~~~~l~~~~ 90 (106)
T 3kp8_A 73 -NGR------TYTGVRSLEALAVAS 90 (106)
T ss_dssp -TTE------EEESCCCHHHHHHHH
T ss_pred -CCE------EecCCCCHHHHHHHh
Confidence 221 256999988876654
No 177
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=94.59 E-value=0.12 Score=45.68 Aligned_cols=90 Identities=12% Similarity=0.074 Sum_probs=60.4
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHH-HHHhcCeEEEecccCChh--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLA-AFVNENFVSWGGSIRASE--------------------------GFK 236 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~-~~l~~nfV~w~~dv~~~E--------------------------g~~ 236 (412)
.+|+++|++. .++|..|......+ ..+. +|-+.++.+.+.++++++ ...
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 108 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEIIAF---DKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKS 108 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHHHH---HHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSH
T ss_pred CCCcEEEEEECCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchH
Confidence 4789999999 89999887666322 1122 222346777777776533 235
Q ss_pred HHhhCCCC-----CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHH
Q 015165 237 MSNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQK 281 (412)
Q Consensus 237 va~~l~~~-----~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~ 281 (412)
+++.|++. .+|..+||++. ..|+.+..|.. ++++++..|..
T Consensus 109 ~~~~~~v~~~~g~~~P~~~lid~~----G~i~~~~~g~~~~~~~~~~l~~~l~~ 158 (198)
T 1zof_A 109 ISRDYDVLFEEAIALRGAFLIDKN----MKVRHAVINDLPLGRNADEMLRMVDA 158 (198)
T ss_dssp HHHHTTCEETTTEECEEEEEEETT----TEEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCcccceEEEECCC----CEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 67788988 89999999974 35666777765 45666666654
No 178
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=94.56 E-value=0.16 Score=44.36 Aligned_cols=92 Identities=9% Similarity=-0.077 Sum_probs=62.2
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChh-----------------------HHHHHh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASE-----------------------GFKMSN 239 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~E-----------------------g~~va~ 239 (412)
.+|+++||+. .++|..|......+ ..+.+-+. .++.+++.++++.+ ...+++
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 106 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELEDV---QKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTISR 106 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHHHH---HHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHHH
Confidence 4689999999 99999888766322 12332233 36777777776532 134677
Q ss_pred hCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHHH
Q 015165 240 SLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (412)
Q Consensus 240 ~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~i 283 (412)
.|++. .+|.+.||++. ..|+.+..|.. ++++++..|....
T Consensus 107 ~~~v~~~~~g~~~P~~~lid~~----G~i~~~~~g~~~~~~~~~~l~~~l~~l~ 156 (187)
T 1we0_A 107 QFDVLNEETGLADRGTFIIDPD----GVIQAIEINADGIGRDASTLINKVKAAQ 156 (187)
T ss_dssp HTTCEETTTTEECEEEEEECTT----SBEEEEEEECTTSCCCTTHHHHHHHHHH
T ss_pred HhCCCcCCCCceeeEEEEECCC----CeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 88888 89999999874 35666666754 5777777776544
No 179
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=94.52 E-value=0.17 Score=49.27 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=65.1
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhh------cCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCC
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEG------TLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAA 256 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~------vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~ 256 (412)
++.+++||+++.++|. |..+.-. +| +.+.+.++. ++.+...|++.. ..++..|++..||.+.++..
T Consensus 26 ~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~--~~~a~~~~~~~v~~~~Vd~~~~--~~l~~~~~v~~~Pt~~~~~~-- 98 (350)
T 1sji_A 26 KKYDVLCLYYHESVSS-DKVAQKQFQLKEIVL--ELVAQVLEHKDIGFVMVDAKKE--AKLAKKLGFDEEGSLYVLKG-- 98 (350)
T ss_dssp TTCSEEEEEEECCSCS-SSTTSHHHHHHHHHH--HHHHHHGGGSSEEEEEEETTTT--HHHHHHHTCCSTTEEEEEET--
T ss_pred hhCCeEEEEEECCCCc-chhhCchhhhhhHHH--HHHHHHHhhcCcEEEEEeCCCC--HHHHHhcCCCccceEEEEEC--
Confidence 4578999999999998 7544321 13 255666665 688888888754 46889999999999998843
Q ss_pred CccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 257 NQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 257 ~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
|. +....|..+.+.+.+.+...+
T Consensus 99 g~----~~~~~G~~~~~~l~~~i~~~~ 121 (350)
T 1sji_A 99 DR----TIEFDGEFAADVLVEFLLDLI 121 (350)
T ss_dssp TE----EEEECSCCCHHHHHHHHHTTS
T ss_pred Cc----EEEecCCCCHHHHHHHHHHhc
Confidence 32 236789999998888776544
No 180
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=94.47 E-value=0.16 Score=43.34 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=58.0
Q ss_pred cCcE-EEEEEe-CCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccCChhH-------------------HHHHhhCC
Q 015165 185 VFKL-LFVYLH-SPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRASEG-------------------FKMSNSLK 242 (412)
Q Consensus 185 e~K~-LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~~~Eg-------------------~~va~~l~ 242 (412)
.+|+ ++|++. +.+|..|......+ ..+.+-+ +.++.+.+.++++.+. ..++..|+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 103 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASAF---RDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYG 103 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHHH---HHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHHH---HHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcC
Confidence 3565 888888 88888777655322 1222222 2357777777765432 35677899
Q ss_pred CCC----CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 243 ASR----YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 243 ~~~----~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+.. +|.++||++. ..|+.+..|..+++..+..+...+
T Consensus 104 v~~~~~~~P~~~lid~~----G~i~~~~~g~~~~~~~~~~il~~l 144 (161)
T 3drn_A 104 AKGFILPARITFVIDKK----GIIRHIYNSQMNPANHVNEALKAL 144 (161)
T ss_dssp CCCSSSCCCEEEEECTT----SBEEEEEECSSCTTHHHHHHHHHH
T ss_pred CCCcCcccceEEEECCC----CEEEEEEecCCCCCcCHHHHHHHH
Confidence 888 9999999974 356677778555444445544444
No 181
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.14 Score=43.97 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=58.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccC--------ChhH-HHHH----------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIR--------ASEG-FKMS---------------- 238 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~--------~~Eg-~~va---------------- 238 (412)
.+|+++|++..++|..|. .... | ..+.+-+ +.++.+++.+++ +.+. ...+
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~~-l--~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYKE-L--EALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHHH-H--HHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHHH-H--HHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 579999999999999887 5422 1 1222222 235777777652 1111 1111
Q ss_pred --------------hhCCCCCCc------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 239 --------------NSLKASRYP------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 239 --------------~~l~~~~~P------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
..|++..+| ...||++. ..++.+..|..+++++.+.|...+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll~ 168 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKK----GKVYERYSSLTKPSSLSETIEELLK 168 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSS----SCEEEEECTTSCGGGGHHHHHHHHT
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECCC----CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 246777889 88888874 3567778898888888887776654
No 182
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=94.23 E-value=0.075 Score=46.45 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=58.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCC--------hh-------------------H
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRA--------SE-------------------G 234 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~--------~E-------------------g 234 (412)
.+|+++|++.+++|..|.... +.+.++.++ .+.+.+.+++. .+ .
T Consensus 32 ~gk~vlv~F~a~~C~~C~~~~------~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~ 105 (188)
T 2cvb_A 32 HEPLLAVVFMCNHCPYVKGSI------GELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET 105 (188)
T ss_dssp CSSEEEEEEECSSCHHHHTTH------HHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS
T ss_pred CCCEEEEEEECCCCccHHHHH------HHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc
Confidence 468999999998886655433 344444432 37777777632 11 2
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeee--------eecCCCHHHHHHHHHHHHHh
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQ--------VEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~r--------i~G~~s~~~ll~~L~~~ie~ 285 (412)
..++..|++..+|.++||+... .++.+ ..|..+.+++...|...+..
T Consensus 106 ~~~~~~~~v~~~P~~~lid~~G----~i~~~g~~~~~~~~~g~~~~~~l~~~i~~ll~~ 160 (188)
T 2cvb_A 106 QEVAKAYRALRTPEVFLFDERR----LLRYHGRVNDNPKDPSKVQSHDLEAAIEALLRG 160 (188)
T ss_dssp SHHHHHTTCCEESEEEEECTTC----BEEEEECSSSCTTCGGGCCCCHHHHHHHHHHTT
T ss_pred chHHHHcCCCCCCeEEEECCCC----cEEEEEecCCccccccccCHHHHHHHHHHHHcC
Confidence 3567789999999999998742 34443 12334677888777776643
No 183
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.22 E-value=0.048 Score=44.77 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.+++++ |+.|.+.++..|..++||++.||...|.+..
T Consensus 66 ~~~qL~qL~eM-GF~d~~~ni~AL~~t~Gdve~AVe~L~~~~~ 107 (108)
T 2cwb_A 66 WQPQLQQLRDM-GIQDDELSLRALQATGGDIQAALELIFAGGA 107 (108)
T ss_dssp THHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhcCC
Confidence 36789999884 7777689999999999999999999997643
No 184
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=93.97 E-value=0.28 Score=43.72 Aligned_cols=108 Identities=11% Similarity=0.085 Sum_probs=70.9
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeC-------CCCCChhHHHhhcCCChHHHHHHh-----cCeEEEecccCChhHHH
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHS-------PDHPDTPAFCEGTLCNEVLAAFVN-----ENFVSWGGSIRASEGFK 236 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~-------~~~~~s~~F~r~vL~~~~v~~~l~-----~nfV~w~~dv~~~Eg~~ 236 (412)
..-..+|++.+. .....+++|++.. ++|..|..|. -+| +.+.+-.. .+++|..+|+++ +..
T Consensus 22 ~lt~~nF~~~v~--~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~-P~~--e~lA~~~~~~~~~~~v~f~kvD~d~--~~~ 94 (178)
T 3ga4_A 22 TVTADNYPLLSR--GVPGYFNILYITMRGTNSNGMSCQLCHDFE-KTY--HAVADVIRSQAPQSLNLFFTVDVNE--VPQ 94 (178)
T ss_dssp ECCTTTHHHHTT--CCTTCEEEEEEECCSBCTTSCBCHHHHHHH-HHH--HHHHHHHHHHCTTCCEEEEEEETTT--CHH
T ss_pred ECCHHHHHHHHc--ccCCCcEEEEEeCCCCCCCCCCChhHHHHH-HHH--HHHHHHhhhccCCCCEEEEEEECcc--CHH
Confidence 345567776543 2346789999998 4899998877 333 34544444 567888888874 678
Q ss_pred HHhhCCCCCCceEEEEeCCCCcc---------ceeeeee-ec-CCCHHHHHHHHHHHH
Q 015165 237 MSNSLKASRYPFCAVVMPAANQR---------IALLQQV-EG-PKSPEEMLMILQKVI 283 (412)
Q Consensus 237 va~~l~~~~~P~l~lI~~~~~~~---------~~vl~ri-~G-~~s~~~ll~~L~~~i 283 (412)
++..|++.++|.+.++-+..+.. ...-..+ .| ..+++.|.+-|...+
T Consensus 95 la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~~t 152 (178)
T 3ga4_A 95 LVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAKIL 152 (178)
T ss_dssp HHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHHhc
Confidence 99999999999999997643221 0011111 24 677888777776544
No 185
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=93.90 E-value=0.17 Score=42.99 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=57.3
Q ss_pred cCcEEEEEEeCCCCCC-hhHHHhhcCCChHHHHHHhc-------CeEEEecccCC----hhH------------------
Q 015165 185 VFKLLFVYLHSPDHPD-TPAFCEGTLCNEVLAAFVNE-------NFVSWGGSIRA----SEG------------------ 234 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~-s~~F~r~vL~~~~v~~~l~~-------nfV~w~~dv~~----~Eg------------------ 234 (412)
.+|+++|++...+|.. |.... +.+.++.++ ++.+++.+++. ++.
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~------~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~ 107 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTL------LALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGS 107 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHH------HHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCC
T ss_pred CCCEEEEEEECCCCcchhHHHH------HHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCC
Confidence 4789999999999987 87665 344444331 57777777642 221
Q ss_pred ----HHHHhhCCC---------------CCCceEEEEeCCCCccceeeeeeecCC--CHHHHHHHHHH
Q 015165 235 ----FKMSNSLKA---------------SRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQK 281 (412)
Q Consensus 235 ----~~va~~l~~---------------~~~P~l~lI~~~~~~~~~vl~ri~G~~--s~~~ll~~L~~ 281 (412)
..+++.|++ ..+|.+.||+ . | .++.+..|.. +++++.+.|..
T Consensus 108 ~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~-G---~i~~~~~g~~~~~~~~l~~~l~~ 170 (172)
T 2k6v_A 108 PEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-E-G---RLVLLYSPDKAEATDRVVADLQA 170 (172)
T ss_dssp HHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-T-T---EEEEEECHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-C-C---EEEEEECCCCCCCHHHHHHHHHH
Confidence 345555553 4679999998 5 3 5667777877 88887777654
No 186
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=93.84 E-value=0.26 Score=43.29 Aligned_cols=91 Identities=13% Similarity=0.084 Sum_probs=59.0
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--------------------------~~v 237 (412)
.+|+++|+++ .++|..|......+- .-..+|-+.++.+.+.++++.+. ..+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~~l~--~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~ 107 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEIIALD--KALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSI 107 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHH--HHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHH
Confidence 5789999999 899998886663221 11122323477777777765431 246
Q ss_pred HhhCCCC-----CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHH
Q 015165 238 SNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQK 281 (412)
Q Consensus 238 a~~l~~~-----~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~ 281 (412)
++.|++. .+|.++||++.. .|+.+..|.. +.++++..|..
T Consensus 108 ~~~~gv~~~~g~~~P~~~liD~~G----~i~~~~~g~~~~~~~~~~l~~~l~~ 156 (192)
T 2h01_A 108 ARSYDVLFNESVALRAFVLIDKQG----VVQHLLVNNLALGRSVDEILRLIDA 156 (192)
T ss_dssp HHHTTCEETTTEECCEEEEECTTS----BEEEEEEGGGSSGGGHHHHHHHHHH
T ss_pred HHHhCCcCcCCceeeEEEEEcCCC----EEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 7788988 899999998742 4555555643 35666655543
No 187
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=93.76 E-value=0.21 Score=53.87 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=72.2
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+-.+.........|+++|+++.++|..|..+...+ +.+.+-+..++.+...|++.. -.++..|++..+|.+.++.
T Consensus 663 ~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~---~~la~~~~~~~~~~~vd~~~~--~~~~~~~~v~~~Pt~~~~~ 737 (780)
T 3apo_A 663 TPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEF---ELLARMIKGKVRAGKVDCQAY--PQTCQKAGIKAYPSVKLYQ 737 (780)
T ss_dssp CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTCEEEEEETTTC--HHHHHHTTCCSSSEEEEEE
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHhcCCceEEEEECCCC--HHHHHhcCCCcCCEEEEEc
Confidence 43444444567789999999999999999877433 445555555788888888653 3578899999999998883
Q ss_pred CCCCccceeeeeeec----CCCHHHHHHHHHHHHHhh
Q 015165 254 PAANQRIALLQQVEG----PKSPEEMLMILQKVIEES 286 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G----~~s~~~ll~~L~~~ie~~ 286 (412)
. |. ++.+..| ..+.+.|...|...+++.
T Consensus 738 -~-g~---~~~~~~G~~~g~~~~~~l~~~l~~~l~~~ 769 (780)
T 3apo_A 738 -Y-ER---AKKSIWEEQINSRDAKTIAALIYGKLETL 769 (780)
T ss_dssp -E-ET---TTTEEEEEEECCCCHHHHHHHHHHHTTC-
T ss_pred -C-CC---ccccccCcccCCcCHHHHHHHHHHHHHHh
Confidence 2 21 2223334 578999988888777554
No 188
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=93.76 E-value=0.36 Score=45.20 Aligned_cols=98 Identities=9% Similarity=0.105 Sum_probs=68.3
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEe--CCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCC---hhHHHHHhhCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLH--SPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRA---SEGFKMSNSLK 242 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh--~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~---~Eg~~va~~l~ 242 (412)
-..+|.+++ ...+++||.++ .|+|. ...+| +.+.+-+. .+++|...|+++ .+...++..|+
T Consensus 22 t~~nF~~vi----~~~~~vlV~Fy~~ApWCg-----l~P~~--e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~ 90 (248)
T 2c0g_A 22 DELSFEKTV----ERFPYSVVKFDIASPYGE-----KHEAF--TAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYK 90 (248)
T ss_dssp CTTTHHHHH----TTSSEEEEEEEESSCCSH-----HHHHH--HHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTT
T ss_pred CHHHHHHHH----hcCCCEEEEEECCCCCCc-----cHHHH--HHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhC
Confidence 456787755 45789999999 99986 22333 24444442 378999999886 33678999999
Q ss_pred CC--CCceEEEEeCCCCccceeeeee--ecCCCHHHHHHHHHHHH
Q 015165 243 AS--RYPFCAVVMPAANQRIALLQQV--EGPKSPEEMLMILQKVI 283 (412)
Q Consensus 243 ~~--~~P~l~lI~~~~~~~~~vl~ri--~G~~s~~~ll~~L~~~i 283 (412)
+. .||.+.++. |. .....+. .|..+.+.|.+.|...+
T Consensus 91 V~~~~~PTl~~F~---G~-~~~~~~y~~~G~~~~~~L~~fi~~~~ 131 (248)
T 2c0g_A 91 VDDKNFPSIFLFK---GN-ADEYVQLPSHVDVTLDNLKAFVSANT 131 (248)
T ss_dssp CCTTSCCEEEEES---SS-SSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred CCcCCCCeEEEEe---CC-cCcceeecccCCCCHHHHHHHHHHhh
Confidence 99 999998886 21 1112334 68889988888877653
No 189
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=93.74 E-value=0.25 Score=46.09 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=67.6
Q ss_pred ccCCHHHHHHHHHhcCcEEEEEEeC--CCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCC---hhHHHHHhhCCC
Q 015165 171 VSEGFMDALQRSRSVFKLLFVYLHS--PDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRA---SEGFKMSNSLKA 243 (412)
Q Consensus 171 ~~gs~~eAl~~Ak~e~K~LlVyLh~--~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~---~Eg~~va~~l~~ 243 (412)
-..+|.+++ ...+++||+++. |+|. |. .+| +.+.+-+. .+++|...|+++ .+...++..|++
T Consensus 11 t~~nF~~~i----~~~~~vlV~FyA~~pWCg----l~-P~~--e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V 79 (240)
T 2qc7_A 11 DTVTFYKVI----PKSKFVLVKFDTQYPYGE----KQ-DEF--KRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKL 79 (240)
T ss_dssp CTTHHHHHG----GGCSEEEEEECCSSCCSH----HH-HHH--HHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTC
T ss_pred CHHHHHHHH----cCCCCEEEEEeCCCCCCc----ch-HHH--HHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCC
Confidence 344566655 357899999999 9887 22 333 24444443 368999999875 345678999999
Q ss_pred C--CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHH
Q 015165 244 S--RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 244 ~--~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ 282 (412)
. .||.+.++.. |. ...+.+..|..+.+.|.+.|...
T Consensus 80 ~~~~~PTl~~f~~--G~-~~~~~~y~G~~~~~~L~~fi~~~ 117 (240)
T 2qc7_A 80 DKESYPVFYLFRD--GD-FENPVPYTGAVKVGAIQRWLKGQ 117 (240)
T ss_dssp CGGGCSEEEEEET--TC-SSCCEECCSCSCHHHHHHHHHHT
T ss_pred CCCCCCEEEEEeC--CC-cCcceeecCCCCHHHHHHHHHHh
Confidence 9 9999988864 21 11233567988988888877654
No 190
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=93.67 E-value=0.32 Score=42.72 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=59.5
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccC--------ChhHH-HHH----------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIR--------ASEGF-KMS---------------- 238 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~--------~~Eg~-~va---------------- 238 (412)
.+|++||++..++|..|......+ ..+.+-+. .++.+++.+++ +.+.. ..+
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~~l---~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYETA---TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHHHH---HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 478999999999999886655222 12222222 35766666654 22211 112
Q ss_pred --------------hhCCCCCCc------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 239 --------------NSLKASRYP------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 239 --------------~~l~~~~~P------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
..+++..+| ...||++. ..++.+..|..+++++...|...+..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll~~ 186 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRD----GVPVERFSPGASVKDIEKKLIPLLES 186 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTT----SCEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECCC----CcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 123566677 78888864 35677788999999988888877654
No 191
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.66 E-value=0.052 Score=42.46 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|...+
T Consensus 29 ~ee~I~~Lv~M-GF~~-~~A~~AL~~t~gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 29 SQESINQLVYM-GFDT-VVAEAALRVFGGNVQLAAQTLAHHGG 69 (83)
T ss_dssp CHHHHHHHHHH-SCCH-HHHHHHHHHTTTCHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 46899999997 9877 89999999999999999999998443
No 192
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.36 E-value=0.1 Score=37.38 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
.+.+|.+++++ |+.|.+..+.+|..++|||+.||..-+....+
T Consensus 9 ~a~~L~~L~eM-GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~ 51 (54)
T 2cp8_A 9 TAALMAHLFEM-GFCDRQLNLRLLKKHNYNILQVVTELLQLSGP 51 (54)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhccCC
Confidence 34578888886 88887999999999999999999998765543
No 193
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=93.32 E-value=0.41 Score=43.42 Aligned_cols=92 Identities=14% Similarity=-0.001 Sum_probs=60.7
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHH-HHHhcCeEEEecccCChh--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLA-AFVNENFVSWGGSIRASE--------------------------GFK 236 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~-~~l~~nfV~w~~dv~~~E--------------------------g~~ 236 (412)
.+|+++|+++ .++|..|......+ ..+. +|-+.++.+.+.++++.+ ...
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~~l---~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~ 131 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEIIAF---SDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQ 131 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHHHH---HHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHH
Confidence 3699999999 89999888766322 1222 233347777777776542 125
Q ss_pred HHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHHH
Q 015165 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKVI 283 (412)
Q Consensus 237 va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~i 283 (412)
+++.|++. .+|.++||++.. .|+.+..|.. +.++++..|....
T Consensus 132 i~~~ygv~~~~~g~~~P~~~liD~~G----~I~~~~~g~~~~~~~~~ell~~l~~l~ 184 (220)
T 1zye_A 132 ISRDYGVLLEGPGLALRGLFIIDPNG----VIKHLSVNDLPVGRSVEETLRLVKAFQ 184 (220)
T ss_dssp HHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHhCCeecCCCcccceEEEECCCC----EEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 67788888 899999998742 4555555653 4577776665443
No 194
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=92.97 E-value=0.064 Score=37.30 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=35.5
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
+..++|.+.+++ |++. ..|+..|.+++||++.|..-.|.+.
T Consensus 3 ~e~eaI~rL~~m-GF~~-~~a~~Al~a~~~n~e~A~~~Lf~~~ 43 (47)
T 1dv0_A 3 QEKEAIERLKAL-GFPE-SLVIQAYFACEKNENLAANFLLSQN 43 (47)
T ss_dssp CCHHHHTTTTTT-TCCH-HHHHHHHTTTTSCHHHHHHHTTSCC
T ss_pred chHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCc
Confidence 356788888887 8888 8999999999999999999998754
No 195
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=92.95 E-value=0.15 Score=55.16 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=64.3
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEe
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~ 253 (412)
+|.+++ +..+++||++++++|..|..+...+ +.+.+-+...+.+...|++.. ..++..|++..||.+.++-
T Consensus 125 ~f~~~i----~~~~~~lv~Fya~wC~~C~~~~p~~---~~~a~~~~~~v~~~~vd~~~~--~~l~~~~~v~~~Pt~~~~~ 195 (780)
T 3apo_A 125 EFDAAV----NSGELWFVNFYSPGSSHSHDLAPTW---REFAKEVDGLLRIGAVNCGDD--RMLCRMKGVNSYPSLFIFR 195 (780)
T ss_dssp HHHHHH----TSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTC--SSCC--------CEEEEEC
T ss_pred hHHhhh----cCCCcEEEEEeCCCCcchhHhhHHH---HHHHHHhcCceEEEEEeCCCc--HHHHHHcCCceeeeEEEEe
Confidence 455554 7799999999999999999988433 455555666788888888754 3578899999999988774
Q ss_pred CCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 254 PAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 254 ~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
. | ..+.+..|..+.+.|.+.|...+
T Consensus 196 ~--g---~~~~~~~G~~~~~~l~~~l~~~~ 220 (780)
T 3apo_A 196 S--G---MAAVKYNGDRSKESLVAFAMQHV 220 (780)
T ss_dssp T--T---SCCEECCSCSCHHHHHHHHHTTS
T ss_pred C--C---cEeeEecCCCCHHHHHHHHHHhc
Confidence 3 3 22456789999888888876554
No 196
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=92.93 E-value=0.32 Score=43.20 Aligned_cols=91 Identities=13% Similarity=-0.007 Sum_probs=58.7
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHH-HHHhcCeEEEecccCChh--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLA-AFVNENFVSWGGSIRASE--------------------------GFK 236 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~-~~l~~nfV~w~~dv~~~E--------------------------g~~ 236 (412)
.+|+++|+++ +++|..|......+ ..+. +|-+.++.+.+.++++.+ ...
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~~l---~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 111 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEICQF---SDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKC 111 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCH
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHH---HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchH
Confidence 4689999999 88888777665321 1222 222346878887776543 124
Q ss_pred HHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHH
Q 015165 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (412)
Q Consensus 237 va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~ 282 (412)
+++.|++. .+|...||++. ..|+.+..|.. +.++++..|...
T Consensus 112 ~~~~ygv~~~~~g~~~P~~~lid~~----G~i~~~~~g~~~~~~~~~ell~~l~~l 163 (202)
T 1uul_A 112 IMKSYGVLKEEDGVAYRGLFIIDPK----QNLRQITVNDLPVGRDVDEALRLVKAF 163 (202)
T ss_dssp HHHHHTCEETTTTEECEEEEEECTT----SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHcCCccCCCCceeeEEEEECCC----CEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence 66778888 89999999874 24555555654 357776666543
No 197
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=92.79 E-value=0.76 Score=38.69 Aligned_cols=38 Identities=8% Similarity=-0.054 Sum_probs=27.4
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+..+|...||++. ..++.+..|..+++++...|...+.
T Consensus 130 i~~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll~ 167 (169)
T 2v1m_A 130 IKWNFSKFLVDRQ----GQPVKRYSPTTAPYDIEGDIMELLE 167 (169)
T ss_dssp CCSTTCEEEECTT----SCEEEEECTTSCGGGGHHHHHHHHH
T ss_pred ccccceEEEECCC----CCEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445788888874 3567778898888888777776653
No 198
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=92.79 E-value=0.39 Score=40.64 Aligned_cols=92 Identities=8% Similarity=-0.024 Sum_probs=57.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccC--------ChhHH-HHHh-hC------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIR--------ASEGF-KMSN-SL------------ 241 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~--------~~Eg~-~va~-~l------------ 241 (412)
.+|++||++..++|..|......+ ..+.+-+. .++.+++.+++ +.+.. ..+. .+
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~~l---~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYAEM---NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHHHH---HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 579999999999999887765322 12222222 35777777663 22221 2222 21
Q ss_pred -----------------CC--CCCc---eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 242 -----------------KA--SRYP---FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 242 -----------------~~--~~~P---~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++ ..+| ...||++. ..++.+..|..+++++...|...+
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ll 167 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKD----GQVVDRYYPTTSPLSLERDIKQLL 167 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTT----SCEEEEECTTSCGGGGHHHHHHHT
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECCC----CCEEEeeCCCCCHHHHHHHHHHHh
Confidence 23 5567 78888864 356777889888888877776654
No 199
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=92.76 E-value=0.45 Score=42.98 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=58.2
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--------------------------~~v 237 (412)
.+|+++||++ .++|..|......+ . +-..+|-+.++.+.+.++++.+. ..+
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~l-~-~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~ 128 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIAL-D-KALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSI 128 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHHH-H-HTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHHH-H-HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHH
Confidence 4689999999 88888777655221 1 11112223477777777765432 246
Q ss_pred HhhCCCC-----CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHH
Q 015165 238 SNSLKAS-----RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (412)
Q Consensus 238 a~~l~~~-----~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~ 282 (412)
++.|++. .+|..+||++.. .|+.+..|.. +.++++..|...
T Consensus 129 ~~~ygv~~~~g~~~p~~~lID~~G----~i~~~~~~~~~~~~~~~ell~~l~~l 178 (213)
T 2i81_A 129 SKDYNVLFDDSVSLRAFVLIDMNG----IVQHLLVNNLAIGRSVDEILRIIDAI 178 (213)
T ss_dssp HHHTTCEETTTEECEEEEEECTTS----BEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHhCCccccCCcccEEEEECCCC----EEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 6778888 899999998742 4555555543 367777766543
No 200
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=92.74 E-value=0.13 Score=39.19 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
..++|.+.+++ |++. +.|+..|..++||++.|+.-.|.+..
T Consensus 29 ~~~~v~~L~~M-GF~~-~~a~~AL~~t~~nve~Ave~L~~~~~ 69 (73)
T 1wiv_A 29 DQSSVDTLLSF-GFAE-DVARKALKASGGDIEKATDWVFNNSG 69 (73)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHhCCC
Confidence 45789999987 8877 89999999999999999999988654
No 201
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=92.73 E-value=0.78 Score=42.30 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH---h-cCeEEEe
Q 015165 151 EAMEFVAVFERDYGNVKPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV---N-ENFVSWG 226 (412)
Q Consensus 151 ~~~~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l---~-~nfV~w~ 226 (412)
....|+..+..--|.. +.. .....+.+. .-.++..+|++++++|..|..... +| ..+..-. + .++.+..
T Consensus 107 ~l~~fv~~~l~~~~~~-~~l-~~~~~~~~~--~~~~~~~vv~F~a~wC~~C~~~~p-~l--~~la~~~~~~~~~~v~~~~ 179 (243)
T 2hls_A 107 EIRALVEVIMRLSEDE-SGL-EDATKEALK--SLKGRVHIETIITPSCPYCPYAVL-LA--HMFAYEAWKQGNPVILSEA 179 (243)
T ss_dssp HHHHHHHHHHHHHTTC-CCC-CHHHHHHHH--HCCSCEEEEEEECSSCSSHHHHHH-HH--HHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHhccCCC-CCC-CHHHHHHHH--HcCCCcEEEEEECCCCCCcHHHHH-HH--HHHHHHcccccCCcEEEEE
Confidence 3456766665544432 222 212222221 234678899999999999998773 22 2233322 1 4688888
Q ss_pred cccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 227 GSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 227 ~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.|++... .++..|++..+|.+.+ .+ .++ ..|..+.++|+..|...+..
T Consensus 180 vd~~~~~--~~~~~~~V~~vPt~~i----~G---~~~--~~G~~~~~~l~~~l~~~~~~ 227 (243)
T 2hls_A 180 VEAYENP--DIADKYGVMSVPSIAI----NG---YLV--FVGVPYEEDFLDYVKSAAEG 227 (243)
T ss_dssp EETTTCH--HHHHHTTCCSSSEEEE----TT---EEE--EESCCCHHHHHHHHHHHHTT
T ss_pred EECccCH--HHHHHcCCeeeCeEEE----CC---EEE--EeCCCCHHHHHHHHHHHhhc
Confidence 8887543 5678899999999887 22 222 67999999999998877654
No 202
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=92.67 E-value=0.86 Score=37.61 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=61.4
Q ss_pred hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCC--CceEEEEeCCCCccce
Q 015165 184 SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMPAANQRIA 261 (412)
Q Consensus 184 ~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~--~P~l~lI~~~~~~~~~ 261 (412)
+..++++|+++.+ |.+|..+. .+| +++.+-....+.|...|+.+ .-.++..|++.. .|.++++....+.
T Consensus 21 ~~~~pv~v~f~a~-~~~c~~~~-p~l--~~~A~~~~gk~~f~~vd~d~--~~~~a~~~gi~~~~iPtl~i~~~~~g~--- 91 (133)
T 2djk_A 21 SAGIPLAYIFAET-AEERKELS-DKL--KPIAEAQRGVINFGTIDAKA--FGAHAGNLNLKTDKFPAFAIQEVAKNQ--- 91 (133)
T ss_dssp HTTSCEEEEECSC-SSSHHHHH-HHH--HHHHHSSTTTSEEEEECTTT--TGGGTTTTTCCSSSSSEEEEECTTTCC---
T ss_pred cCCCCEEEEEecC-hhhHHHHH-HHH--HHHHHHhCCeEEEEEEchHH--hHHHHHHcCCCcccCCEEEEEecCcCc---
Confidence 4567899999988 77887555 332 23333333467888888763 345888999999 9999988753232
Q ss_pred eeeeee--cCCCHHHHHHHHHHHHH
Q 015165 262 LLQQVE--GPKSPEEMLMILQKVIE 284 (412)
Q Consensus 262 vl~ri~--G~~s~~~ll~~L~~~ie 284 (412)
. .++. |..+.+.+.+.|...++
T Consensus 92 ~-~~~~~~g~~~~~~l~~fi~~~l~ 115 (133)
T 2djk_A 92 K-FPFDQEKEITFEAIKAFVDDFVA 115 (133)
T ss_dssp B-CCCCSSSCCCHHHHHHHHHHHHH
T ss_pred c-cCCCCccccCHHHHHHHHHHHHc
Confidence 2 1344 88898887777776653
No 203
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=92.62 E-value=0.82 Score=40.54 Aligned_cols=95 Identities=8% Similarity=0.076 Sum_probs=57.8
Q ss_pred cCcEEEEEEeCCCCCC-hhHHHhhcCCChHHHHHHh----cCeEEEecccC----Chh----------------------
Q 015165 185 VFKLLFVYLHSPDHPD-TPAFCEGTLCNEVLAAFVN----ENFVSWGGSIR----ASE---------------------- 233 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~-s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~----~~E---------------------- 233 (412)
.+|++||++...+|.. |......+ ..+.+-+. .++.+++.+++ +++
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~~l---~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~~~~~~~~~l~~~~d~ 116 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELDKL---GLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDE 116 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHHH---HHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHTTSCTTCEEEECCHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHHHH---HHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHHHcCCCceEEeCCHHH
Confidence 4789999999998887 77655221 12222232 25655555554 121
Q ss_pred HHHHHhhCCCC-CCc---------------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 234 GFKMSNSLKAS-RYP---------------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 234 g~~va~~l~~~-~~P---------------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
...+++.|++. ..| .+.||++. ..|+.++.|..+++.+...|...+...
T Consensus 117 ~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~----G~i~~~~~g~~~~~~~~~~i~~~l~~l 181 (200)
T 2b7k_A 117 VKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPE----GQFVDALGRNYDEKTGVDKIVEHVKSY 181 (200)
T ss_dssp HHHHHHHTTC--------------CTTTCCCEEEECTT----SCEEEEECTTCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCC----CcEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 23466777765 233 67888874 356667778888888888888777553
No 204
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=91.80 E-value=0.022 Score=48.41 Aligned_cols=85 Identities=6% Similarity=-0.080 Sum_probs=48.6
Q ss_pred HHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHH-hcCeEEEecccCChh--HH------------------HH
Q 015165 179 LQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV-NENFVSWGGSIRASE--GF------------------KM 237 (412)
Q Consensus 179 l~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l-~~nfV~w~~dv~~~E--g~------------------~v 237 (412)
+..+.-.+|+++|++..++|..|..+... |...-..++- +.++.+.+.++++.. .. .+
T Consensus 26 ~~l~~~~gk~vll~f~a~~C~~C~~~~~~-l~~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~ 104 (159)
T 2ls5_A 26 VTLSSLRGKVVMLQFTASWCGVCRKEMPF-IEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPGADI 104 (159)
Confidence 33344467999999999999988776633 3221112232 346777777766432 11 12
Q ss_pred HhhCC--CCCCceEEEEeCCCCccceeeeeeec
Q 015165 238 SNSLK--ASRYPFCAVVMPAANQRIALLQQVEG 268 (412)
Q Consensus 238 a~~l~--~~~~P~l~lI~~~~~~~~~vl~ri~G 268 (412)
+..|+ +..+|.++||++. ..++.+..|
T Consensus 105 ~~~~~~~~~~~P~~~lid~~----G~i~~~~~g 133 (159)
T 2ls5_A 105 FAKYALRDAGITRNVLIDRE----GKIVKLTRL 133 (159)
Confidence 33444 3458888888763 234445555
No 205
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=92.55 E-value=0.62 Score=47.77 Aligned_cols=107 Identities=6% Similarity=0.034 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--------CeEEEecccCChhHHHHHhhCCCC
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--------NFVSWGGSIRASEGFKMSNSLKAS 244 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--------nfV~w~~dv~~~Eg~~va~~l~~~ 244 (412)
.+|.+++. ....|+++|+++.++|..|..+...+ +.+.+-+.+ ++.+...|++.. ..++..|++.
T Consensus 31 ~~F~~~l~--~~~~k~VlV~FyA~WC~pCk~~~P~l---~~la~~~~~~~g~~~~~~v~f~~VD~d~~--~~la~~y~V~ 103 (470)
T 3qcp_A 31 DDFSRVHR--VAPLCPWIVLFYNDGCGACRRYASTF---SKFAGGLKVEHGKDALQIATAAAVNCASE--VDLCRKYDIN 103 (470)
T ss_dssp SCGGGTCT--TGGGSCEEEEEECTTCHHHHHHHHHH---HHHHHTSCCSSCSSGGGGCEEEEEETTTC--HHHHHHTTCC
T ss_pred HHHHHHHH--hCCCCeEEEEEECCCCHHHHHHHHHH---HHHHHHHhhhcccccCceEEEEEEECCCC--HHHHHHcCCC
Confidence 34444442 24568999999999999999988332 334443331 388888888754 5788999999
Q ss_pred CCceEEEEeCCCC---------ccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 245 RYPFCAVVMPAAN---------QRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 245 ~~P~l~lI~~~~~---------~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
.||.+.++....+ ....-+..+...++.+++...+...+.+.
T Consensus 104 ~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~~~eLe~~~e~Link~ 154 (470)
T 3qcp_A 104 FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLEVDELESEVRRLVNKH 154 (470)
T ss_dssp SSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcCHHHHHHHHHHHhhhc
Confidence 9999999964221 11222244555567777776666655443
No 206
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=92.37 E-value=0.42 Score=42.18 Aligned_cols=90 Identities=16% Similarity=0.029 Sum_probs=58.6
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHH-HHhcCeEEEecccCChh--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAA-FVNENFVSWGGSIRASE--------------------------GFK 236 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~-~l~~nfV~w~~dv~~~E--------------------------g~~ 236 (412)
.+|+++|+++ .++|..|......+ ..+.+ |-+.++.+.+.++++.+ ...
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~~l---~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~ 109 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEIIAF---SNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRR 109 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH---HHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCH
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHH---HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhCCCCCCceEEEECCcHH
Confidence 4689999999 88888877665322 12222 22346878887776543 124
Q ss_pred HHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHH
Q 015165 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQK 281 (412)
Q Consensus 237 va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~ 281 (412)
++..|++. .+|..+||++.. .|+.+..|.. +.++++..|..
T Consensus 110 ~~~~~gv~~~~~~~~~P~~~lid~~G----~i~~~~~g~~~~~~~~~e~l~~l~~ 160 (197)
T 1qmv_A 110 LSEDYGVLKTDEGIAYRGLFIIDGKG----VLRQITVNDLPVGRSVDEALRLVQA 160 (197)
T ss_dssp HHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBCCCHHHHHHHHHH
T ss_pred HHHHcCCccCCCCceeeEEEEECCCC----cEEEEEeCCCCCCCCHHHHHHHHHh
Confidence 67788887 799999998742 4555666654 35666666654
No 207
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.26 E-value=0.15 Score=39.95 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
..++|.+++++ |++. +.|+..|..++||+|.|+.-.|+..
T Consensus 21 n~~~I~qL~~M-GF~~-~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 21 MSRLIKQLTDM-GFPR-EPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 36789999996 9988 8999999999999999999988754
No 208
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=92.23 E-value=0.64 Score=41.74 Aligned_cols=99 Identities=9% Similarity=-0.032 Sum_probs=58.8
Q ss_pred HHHHHHHHH--hcCcEEEEEEe-----CCCCCChhHHHhhcCCChHHH-HHH-hcCeEEEecccCChhHHHHHhhCCCCC
Q 015165 175 FMDALQRSR--SVFKLLFVYLH-----SPDHPDTPAFCEGTLCNEVLA-AFV-NENFVSWGGSIRASEGFKMSNSLKASR 245 (412)
Q Consensus 175 ~~eAl~~Ak--~e~K~LlVyLh-----~~~~~~s~~F~r~vL~~~~v~-~~l-~~nfV~w~~dv~~~Eg~~va~~l~~~~ 245 (412)
-.+.++... +-.++++|+++ +++|..|..|...+ .++. ++. ..++.+...|++. .-.++..|++..
T Consensus 7 ~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~---~~~a~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~ 81 (229)
T 2ywm_A 7 VRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKET---VEVIGEAVGQDKIKLDIYSPFT--HKEETEKYGVDR 81 (229)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHH---HHHHHHHHCTTTEEEEEECTTT--CHHHHHHTTCCB
T ss_pred HHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHH---HHHHhccCCCCceEEEEecCcc--cHHHHHHcCCCc
Confidence 334444433 34456666666 34455555555221 1221 222 4567777777754 457899999999
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
||.+.++.. + ....+..|..+.+++.+.+...+
T Consensus 82 ~Ptl~~~~~--~---~~~~~~~G~~~~~~l~~~~~~~~ 114 (229)
T 2ywm_A 82 VPTIVIEGD--K---DYGIRYIGLPAGLEFTTLINGIF 114 (229)
T ss_dssp SSEEEEESS--S---CCCEEEESCCCTTHHHHHHHHHH
T ss_pred CcEEEEECC--C---cccceecCCccHHHHHHHHHHHH
Confidence 999998853 1 22345678888777776665544
No 209
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.09 E-value=0.12 Score=38.15 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.+
T Consensus 9 ~~~~v~~L~~M-GF~~-~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 9 PEDCVTTIVSM-GFSR-DQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46789999995 9887 899999999999999999998874
No 210
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.21 E-value=0.029 Score=46.67 Aligned_cols=43 Identities=30% Similarity=0.420 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
+-.|+|+.+|||++|...-...|..++.||..||..+-+....
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 3478999999999999999999999999999999998876543
No 211
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=91.83 E-value=0.59 Score=40.91 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=57.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccC--------ChhHH-HHH-------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIR--------ASEGF-KMS------------- 238 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~--------~~Eg~-~va------------- 238 (412)
.+|++||++...+|..|.... +.+.++.+ .++.+++.+++ +.+.. ..+
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~------p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~ 118 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGY------ETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAK 118 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHH------HHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCC
T ss_pred CCCEEEEEEecCCCCCcHHHH------HHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeec
Confidence 578999999999999887765 23333322 35666666553 12211 111
Q ss_pred --------------------hhCCCCCCc---eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 239 --------------------NSLKASRYP---FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 239 --------------------~~l~~~~~P---~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
..+++..+| ...||++. ..|+.+..|..+++++...|...+.
T Consensus 119 ~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~----G~i~~~~~g~~~~~~l~~~i~~lL~ 183 (187)
T 3dwv_A 119 INVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRD----GVPVERFSPGASVKDIEEKLIPLLG 183 (187)
T ss_dssp BCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTT----SCEEEEECTTCCHHHHHHHHHHHC-
T ss_pred cccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCC----CCEEEEECCCCCHHHHHHHHHHHHh
Confidence 122344666 88888874 3567778899999988888876654
No 212
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=91.79 E-value=0.094 Score=47.55 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=57.9
Q ss_pred cCcE-EEEEEeCCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCCh--------h------------------
Q 015165 185 VFKL-LFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRAS--------E------------------ 233 (412)
Q Consensus 185 e~K~-LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~--------E------------------ 233 (412)
.+|+ +||++..++|..|.... +.+.++.+ .++.+.+.++++. +
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~------~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D 130 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIR------EALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKD 130 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTH------HHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCCCeEEEEEECCCCccHHHHH------HHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEEC
Confidence 4674 99999988776555443 34444433 3588888887421 1
Q ss_pred -HHHHHhhCCCCCCceEEEEeCCCCccceeeee---------eecCCCHHHHHHHHHHHHHh
Q 015165 234 -GFKMSNSLKASRYPFCAVVMPAANQRIALLQQ---------VEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 234 -g~~va~~l~~~~~P~l~lI~~~~~~~~~vl~r---------i~G~~s~~~ll~~L~~~ie~ 285 (412)
...+++.|++..+|.++||+... .|+.+ ..|..+.+++.+.|...+..
T Consensus 131 ~~~~~~~~~~v~~~P~~~liD~~G----~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~ll~~ 188 (218)
T 3u5r_E 131 ASQSVAKAYGAACTPDFFLYDRER----RLVYHGQFDDARPGNGKDVTGADLRAAVDAVLKG 188 (218)
T ss_dssp TTCHHHHHHTCCEESEEEEECTTC----BEEEEECSSSCCTTSCCCCCCHHHHHHHHHHHTT
T ss_pred CccHHHHHcCCCCCCeEEEECCCC----cEEEeccccccccccccccCHHHHHHHHHHHHcC
Confidence 23577889999999999998742 23322 12234567777777766643
No 213
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=91.53 E-value=0.33 Score=49.52 Aligned_cols=99 Identities=9% Similarity=0.060 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHHHHHhhCCCCCCceE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l 249 (412)
.+|.+.+ .+..|+++|+++.++|..|..+...+ ..+.+-+. .++++...|++..+ +.. |++..||.+
T Consensus 366 ~~f~~~v---~~~~k~vlv~F~a~wC~~C~~~~p~~---~~l~~~~~~~~~~v~~~~vd~~~~~---~~~-~~v~~~Pt~ 435 (504)
T 2b5e_A 366 KNHDEIV---NDPKKDVLVLYYAPWCGHCKRLAPTY---QELADTYANATSDVLIAKLDHTEND---VRG-VVIEGYPTI 435 (504)
T ss_dssp TTHHHHH---HCTTCCEEEEEECTTCHHHHHHHHHH---HHHHHHHHHHCSSCEEEEEEGGGCC---CSS-CCCSSSSEE
T ss_pred ccHHHhh---ccCCCCEEEEEECCCChhHHHHhHHH---HHHHHHhhccCCcEEEEEecCCccc---ccc-CCceecCeE
Confidence 3465554 45689999999999999999887433 34444443 27889999887554 223 999999998
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
.++. . |. ...+.+..|..+.+.|++.|...+.
T Consensus 436 ~~~~-~-G~-~~~~~~~~G~~~~~~l~~~i~~~~~ 467 (504)
T 2b5e_A 436 VLYP-G-GK-KSESVVYQGSRSLDSLFDFIKENGH 467 (504)
T ss_dssp EEEC-C-TT-SCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred EEEe-C-Cc-eecceEecCCCCHHHHHHHHHhcCC
Confidence 8883 2 32 1113456798899988888876543
No 214
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=91.50 E-value=2.7 Score=37.94 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=68.3
Q ss_pred CCCCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCC--
Q 015165 167 KPNFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKAS-- 244 (412)
Q Consensus 167 ~p~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~-- 244 (412)
.|.+-.-+...+-.......++++++++++++.++..+...+ ..|.+-...++.|-..|..+.+.-.++..|+++
T Consensus 112 ~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~---~~vAk~~k~~i~F~~vd~~~~~~~~~l~~fgl~~~ 188 (227)
T 4f9z_D 112 LHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRY---QKAAKLFQGKILFILVDSGMKENGKVISFFKLKES 188 (227)
T ss_dssp CCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHH---HHHHHHTTTTCEEEEEETTSGGGHHHHHHTTCCGG
T ss_pred CCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHH---HHHHHHhhCCEEEEEeCCccHhHHHHHHHcCCCcc
Confidence 455544455555555555667777777777777887766332 234444444565555676655555677889988
Q ss_pred CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.+|.++++....+....+ -.|..+++.+.+-+..++
T Consensus 189 ~~P~~~i~~~~~~~ky~~---~~~~~t~~~i~~Fv~~~~ 224 (227)
T 4f9z_D 189 QLPALAIYQTLDDEWDTL---PTAEVSVEHVQNFCDGFL 224 (227)
T ss_dssp GCSEEEEEESSSCCEEEE---TTCCCCHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccC---CcCCCCHHHHHHHHHHHh
Confidence 899999998753322221 125678877666555544
No 215
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=91.39 E-value=0.09 Score=44.18 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=18.5
Q ss_pred CCCceeEeecceecCCCCcccccccCC
Q 015165 385 GPNVTQVIFFLIFFPLSSMIFPLTFLQ 411 (412)
Q Consensus 385 ~~~~~~v~~~~~RlP~G~ri~~~~~~~ 411 (412)
..+.++|. ||||||+|+ .|+|..
T Consensus 40 ~~~~t~Iq---IRlPdG~rl-~~rF~~ 62 (124)
T 1wj4_A 40 NGPKAQLM---LRYPDGKRE-QITLPE 62 (124)
T ss_dssp SSCEEEEE---EECTTSCEE-EEEEET
T ss_pred CCCcEEEE---EECCCCCEE-EEEeCC
Confidence 46788899 999999988 567754
No 216
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=91.39 E-value=1.2 Score=38.47 Aligned_cols=94 Identities=13% Similarity=0.022 Sum_probs=58.2
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh-cCeEEEecccC--------ChhH-HHHHhh-CCCC---------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIR--------ASEG-FKMSNS-LKAS--------- 244 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~--------~~Eg-~~va~~-l~~~--------- 244 (412)
.+|++||++..++|..|......+ ..+.+-+. .++.+++.+++ +.+. ...+.. ++.+
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYLGL---KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI 113 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEEecCCCCcHHHHHHH---HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence 579999999999999888766221 12222222 35878777654 2222 233333 3221
Q ss_pred -----------------CCce----EEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 245 -----------------RYPF----CAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 245 -----------------~~P~----l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
.+|. ..||++. ..++.+..|..+++.+...|...+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPE----GQVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp SSTTCCHHHHHHHHHHTCCCSSTTCEEEECTT----SCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred cCccccHHHHHHHhcCCCCccccceEEEECCC----CCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1455 6777763 35677788989988887777766644
No 217
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=90.70 E-value=1.2 Score=42.91 Aligned_cols=107 Identities=7% Similarity=0.035 Sum_probs=71.6
Q ss_pred CCccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCC--C
Q 015165 169 NFVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR--Y 246 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~--~ 246 (412)
.+-..++...+ .+..+.++|++.+++|.+|..+...+ ..+.+-++..+.|...|....+...++..|++.. +
T Consensus 121 ~~~~~~~~~~~---~~~~~~~~v~F~~~~~~~~~~~~~~~---~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~ 194 (361)
T 3uem_A 121 EFTEQTAPKIF---GGEIKTHILLFLPKSVSDYDGKLSNF---KTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEEC 194 (361)
T ss_dssp ECSTTTHHHHH---SCSCCEEEEEECCSSSSSHHHHHHHH---HHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTC
T ss_pred ecCcccHHHHh---cCCCCcEEEEEEeCCchhHHHHHHHH---HHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCC
Confidence 33445555332 34556788999999999999887322 2444445556777778887666778899999987 9
Q ss_pred ceEEEEeCCCC-ccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 247 PFCAVVMPAAN-QRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 247 P~l~lI~~~~~-~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|.+.++..... .+... -.|..+.+.+.+-+...++
T Consensus 195 P~~~~~~~~~~~~ky~~---~~~~~~~~~l~~fi~~~l~ 230 (361)
T 3uem_A 195 PAVRLITLEEEMTKYKP---ESEELTAERITEFCHRFLE 230 (361)
T ss_dssp SEEEEEECC--CCEECC---SSCCCCHHHHHHHHHHHHT
T ss_pred ccEEEEEcCCcccccCC---CccccCHHHHHHHHHHHhc
Confidence 99999886321 11111 1267888888777777664
No 218
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=90.47 E-value=0.28 Score=36.31 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCC-CHHHHHhhhhCCCC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDW-DLELAISSFTSSNP 46 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W-~le~Ai~~~~~~~~ 46 (412)
+++|.+++++ |++. +.|+..|..++| |+|.|+.-.|....
T Consensus 20 e~~i~~L~~M-GF~~-~~a~~AL~~t~~~nve~A~ewL~~~~~ 60 (64)
T 2cpw_A 20 GSALDVLLSM-GFPR-ARAQKALASTGGRSVQTACDWLFSHSG 60 (64)
T ss_dssp CCHHHHHHHH-TCCH-HHHHHHHHHTTTSCHHHHHHHHHSCCS
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence 4678999985 9988 899999999999 99999999998643
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=90.32 E-value=0.11 Score=40.30 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=16.9
Q ss_pred CCCceeEeecceecCCCCccccc
Q 015165 385 GPNVTQVIFFLIFFPLSSMIFPL 407 (412)
Q Consensus 385 ~~~~~~v~~~~~RlP~G~ri~~~ 407 (412)
+.++++|. ||||||+++++|
T Consensus 4 ~~~~~~i~---iRlpdG~r~~~~ 23 (84)
T 3qx1_A 4 MEPVSKLR---IRTPSGEFLERR 23 (84)
T ss_dssp CCCEEEEE---EECTTSCEEEEE
T ss_pred CCCeEEEE---EECCCCCEEEEE
Confidence 35678999 999999998765
No 220
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=89.33 E-value=0.84 Score=41.31 Aligned_cols=77 Identities=13% Similarity=0.004 Sum_probs=51.3
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHh----cCeEEEecccCChhH-------------------------
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN----ENFVSWGGSIRASEG------------------------- 234 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~----~nfV~w~~dv~~~Eg------------------------- 234 (412)
.+|++||++. +.+|..|..-. +.+.++.+ .++.+.+.++++.+.
T Consensus 68 ~Gk~vll~F~a~~wC~~C~~~~------p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 141 (222)
T 3ztl_A 68 RGKYVVLFFYPADFTFVCPTEI------IAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADR 141 (222)
T ss_dssp TTSEEEEEECSCSSCSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECS
T ss_pred CCCeEEEEEECCCCCCchHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCC
Confidence 5789999999 48888777655 33333322 367777777765431
Q ss_pred -HHHHhhCCCC------CCceEEEEeCCCCccceeeeeeecCCC
Q 015165 235 -FKMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPKS 271 (412)
Q Consensus 235 -~~va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~s 271 (412)
..++..|++. .+|..+||++. ..|+.+..|..+
T Consensus 142 ~~~~~~~ygv~~~~~g~~~P~~~lID~~----G~I~~~~~g~~~ 181 (222)
T 3ztl_A 142 KQEISKAYGVFDEEDGNAFRGLFIIDPN----GILRQITINDKP 181 (222)
T ss_dssp SSHHHHHTTCBCTTTSSBCEEEEEECTT----SEEEEEEEECTT
T ss_pred chHHHHHcCCeecCCCCccceEEEECCC----CeEEEEEecCCC
Confidence 1456678887 89999999974 255666666544
No 221
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.31 E-value=0.58 Score=34.01 Aligned_cols=44 Identities=18% Similarity=0.204 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
.+++|.+++++.-.=|.+....+|+++++|++.||...+....+
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~ 52 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEE 52 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCC
Confidence 46789999999766666889999999999999999999876543
No 222
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.31 E-value=0.77 Score=34.27 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.|..+ .|+.|.+.++..|..+++|++.||...|.+..
T Consensus 19 y~~ql~qL~~-MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 19 FSKEMECLQA-MGFVNYNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp THHHHHHHHH-HTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHH-cCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 3468888887 47777677799999999999999999998654
No 223
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.25 E-value=0.32 Score=37.94 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
..++|.+++++ |++. +.|+..|..++||+|.|+.-.|.+.
T Consensus 29 ~e~~i~~L~~M-GF~~-~~a~~AL~~t~~nve~A~ewL~~~~ 68 (83)
T 2dai_A 29 DEAALRQLTEM-GFPE-NRATKALQLNHMSVPQAMEWLIEHA 68 (83)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTSCHHHHHHHHHHGG
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 46789999995 9998 8999999999999999999998754
No 224
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=88.75 E-value=0.074 Score=43.79 Aligned_cols=68 Identities=15% Similarity=0.047 Sum_probs=46.0
Q ss_pred cCc-EEEEEEeCCCCCChhHHHhhcCCChHHHHHH---hcCeEEEecccCChh-----------------------HHHH
Q 015165 185 VFK-LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFV---NENFVSWGGSIRASE-----------------------GFKM 237 (412)
Q Consensus 185 e~K-~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l---~~nfV~w~~dv~~~E-----------------------g~~v 237 (412)
.+| +++||+..++|..|..+...+ ..+.+-+ ..++.+.+.++++.. ...+
T Consensus 24 ~gk~~vll~F~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (143)
T 2lus_A 24 KDKDIIGFYFSAHWCPPCRGFTPIL---ADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNV 100 (143)
Confidence 467 999999999999888776432 2233333 135666666665332 1356
Q ss_pred HhhCCCCCCceEEEEeCC
Q 015165 238 SNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 238 a~~l~~~~~P~l~lI~~~ 255 (412)
+..|++..+|.+.+|.+.
T Consensus 101 ~~~~~v~~~P~~~lid~~ 118 (143)
T 2lus_A 101 TAKYGITGIPALVIVKKD 118 (143)
Confidence 778899999999998863
No 225
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=88.85 E-value=0.49 Score=41.11 Aligned_cols=32 Identities=6% Similarity=-0.141 Sum_probs=22.4
Q ss_pred CCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
.+|.+.||++. ..++.+..|..+++++...|.
T Consensus 149 ~~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~ 180 (183)
T 2obi_A 149 WNFTKFLIDKN----GCVVKRYGPMEEPLVIEKDLP 180 (183)
T ss_dssp STTCEEEECTT----SCEEEEECTTSCTHHHHTTSG
T ss_pred ccceEEEECCC----CCEEEEeCCCCCHHHHHHHHH
Confidence 35888888874 356777888888887665543
No 226
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=88.81 E-value=1.4 Score=37.07 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=40.5
Q ss_pred CcEEEEEEeC-CCCCChhHHHhhcCCChHHHHHH----hcCeEEEecccCChhHH-------------------HHHhhC
Q 015165 186 FKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRASEGF-------------------KMSNSL 241 (412)
Q Consensus 186 ~K~LlVyLh~-~~~~~s~~F~r~vL~~~~v~~~l----~~nfV~w~~dv~~~Eg~-------------------~va~~l 241 (412)
+|+++||+.. .+|..|..-. +.+.++. +.++.+.+.++++++.. .+++.|
T Consensus 35 gk~~vl~F~~~~~c~~C~~~~------~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 108 (163)
T 3gkn_A 35 GHWLVIYFYPKDSTPGATTEG------LDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAF 108 (163)
T ss_dssp TSCEEEEECSCTTSHHHHHHH------HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHHHHT
T ss_pred CCcEEEEEeCCCCCCcHHHHH------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHh
Confidence 5566666664 5555544433 2233222 22455555555544422 456677
Q ss_pred CCCC------------CceEEEEeCCCCccceeeeeeecC
Q 015165 242 KASR------------YPFCAVVMPAANQRIALLQQVEGP 269 (412)
Q Consensus 242 ~~~~------------~P~l~lI~~~~~~~~~vl~ri~G~ 269 (412)
++.. .|...||++.. .|+....|.
T Consensus 109 ~v~~~~~~~~~~~~~~~p~~~lid~~G----~i~~~~~~~ 144 (163)
T 3gkn_A 109 DVIKEKNMYGKQVLGIERSTFLLSPEG----QVVQAWRKV 144 (163)
T ss_dssp TCEEEEEETTEEEEEECCEEEEECTTS----CEEEEECSC
T ss_pred CCccccccccccccCcceEEEEECCCC----eEEEEEcCC
Confidence 7766 89999998742 344444443
No 227
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=88.73 E-value=0.85 Score=39.55 Aligned_cols=90 Identities=11% Similarity=0.004 Sum_probs=54.4
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHH-HHhcCeEEEecccC--------ChhH-HHHHhh-CC-----------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAA-FVNENFVSWGGSIR--------ASEG-FKMSNS-LK----------- 242 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~-~l~~nfV~w~~dv~--------~~Eg-~~va~~-l~----------- 242 (412)
.+|++||++..++|..|......+ .++.+ |-+.++.+++.+++ +.+. ...+.. ++
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~p~l---~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~ 124 (181)
T 2p31_A 48 RGSVSLVVNVASECGFTDQHYRAL---QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAV 124 (181)
T ss_dssp TTSEEEEEEECSSSTTHHHHHHHH---HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEeccCCCCcHHHHHHH---HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeeccc
Confidence 579999999999999888665322 12222 22235777777664 2222 222222 21
Q ss_pred ------------CCCCc-------eEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 243 ------------ASRYP-------FCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 243 ------------~~~~P-------~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+..+| ...||++. ..|+.+..|..+++++...|..
T Consensus 125 ~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ 178 (181)
T 2p31_A 125 TGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPD----GKVVGAWDPTVSVEEVRPQITA 178 (181)
T ss_dssp SSTTSCHHHHHHHHHHSCCCCSTTCEEEECTT----SCEEEEECTTSCHHHHHHHHHT
T ss_pred CCccchhhhhhhhhcCCCccccceeEEEEcCC----CCEEEEeCCCCCHHHHHHHHHH
Confidence 22356 67777763 3567778888888887766654
No 228
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=88.47 E-value=1.7 Score=37.86 Aligned_cols=70 Identities=13% Similarity=-0.102 Sum_probs=50.0
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChhHHHHHhhCC---CCCCceEEEEeCCCCcc
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASEGFKMSNSLK---ASRYPFCAVVMPAANQR 259 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~Eg~~va~~l~---~~~~P~l~lI~~~~~~~ 259 (412)
.+|+++|++..++|.+|..+. |.+.++-. .++.+...|++ +...++..|. +..+|.+.++... +
T Consensus 53 ~~k~vvv~F~A~WC~pC~~~~------P~l~~l~~~~~~v~~~~v~~d--~~~~~~~~~~~~~v~~iPt~i~~~~~-G-- 121 (167)
T 1z6n_A 53 ERRYRLLVAGEMWCPDCQINL------AALDFAQRLQPNIELAIISKG--RAEDDLRQRLALERIAIPLVLVLDEE-F-- 121 (167)
T ss_dssp CSCEEEEEECCTTCHHHHHHH------HHHHHHHHHCTTEEEEEECHH--HHHHHTTTTTTCSSCCSSEEEEECTT-C--
T ss_pred CCCEEEEEEECCCChhHHHHH------HHHHHHHHHCCCcEEEEEECC--CCHHHHHHHHHcCCCCcCeEEEECCC-C--
Confidence 579999999999999999887 44444433 25767777765 3445666676 9999999998763 2
Q ss_pred ceeeeee
Q 015165 260 IALLQQV 266 (412)
Q Consensus 260 ~~vl~ri 266 (412)
.++.++
T Consensus 122 -~~~~~~ 127 (167)
T 1z6n_A 122 -NLLGRF 127 (167)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 345555
No 229
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=87.51 E-value=1.8 Score=39.01 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=52.3
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcC--eEE--Eec---------------------------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN--FVS--WGG--------------------------------- 227 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~n--fV~--w~~--------------------------------- 227 (412)
..|..+|.+.+++|+.|..|.. .+.++.+.+ +++ +..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~------~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~ 158 (216)
T 1eej_A 85 QEKHVITVFTDITCGYCHKLHE------QMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV 158 (216)
T ss_dssp TCCEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHHHHHHHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCC
Confidence 4688888888888888877763 244444432 222 211
Q ss_pred -----ccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 228 -----SIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 228 -----dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
...-.+...++..|++..+|.+++..+ . ++.|..++++|...|....
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~dG---~------~~~G~~~~~~l~~~l~~~~ 210 (216)
T 1eej_A 159 APASCDVDIADHYALGVQLGVSGTPAVVLSNG---T------LVPGYQPPKEMKEFLDEHQ 210 (216)
T ss_dssp CCCCCSCCHHHHHHHHHHHTCCSSSEEECTTS---C------EEESCCCHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHcCCCccCEEEEcCC---e------EecCCCCHHHHHHHHHHhh
Confidence 111123456788899999999843232 1 3468889888877776543
No 230
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=87.37 E-value=1.2 Score=37.81 Aligned_cols=89 Identities=6% Similarity=-0.100 Sum_probs=54.2
Q ss_pred cCcEEEEEEeCCC-CCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh---------------------HHHHHhh
Q 015165 185 VFKLLFVYLHSPD-HPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE---------------------GFKMSNS 240 (412)
Q Consensus 185 e~K~LlVyLh~~~-~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E---------------------g~~va~~ 240 (412)
.+|+++|++...+ |..|.... +.+.++.+ .++.+.+.++++++ ...+++.
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~------~~l~~l~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 116 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQT------RRFNEEAAKLGDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA 116 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTH------HHHHHHHHHHSSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH
T ss_pred CCCeEEEEEecCCCCCchHHHH------HHHHHHHHHcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH
Confidence 4688899988887 77666544 23333322 45656555555432 2345667
Q ss_pred CCCCC------CceEEEEeCCCCccceeeeeeecC-----CCHHHHHHHHHHHH
Q 015165 241 LKASR------YPFCAVVMPAANQRIALLQQVEGP-----KSPEEMLMILQKVI 283 (412)
Q Consensus 241 l~~~~------~P~l~lI~~~~~~~~~vl~ri~G~-----~s~~~ll~~L~~~i 283 (412)
|++.. +|...||++.+ .|+.+..|. .+.+++++.|...+
T Consensus 117 ~~v~~~~~g~~~p~~~lid~~G----~i~~~~~g~~~~~~~~~~~l~~~l~~ll 166 (167)
T 2jsy_A 117 FGVYIKELRLLARSVFVLDENG----KVVYAEYVSEATNHPNYEKPIEAAKALV 166 (167)
T ss_dssp TTCBBTTTCSBCCEEEEECTTS----CEEEEEECSBTTSCCCSHHHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEEcCCC----cEEEEEecCCcCCCCCHHHHHHHHHHhh
Confidence 77765 49999998742 455555542 24578888776543
No 231
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=87.02 E-value=1.7 Score=40.47 Aligned_cols=88 Identities=14% Similarity=0.003 Sum_probs=53.2
Q ss_pred cCcEEEE-EEeCCCCCChhHHHhhcCCChHHHH----HHhcCeEEEecccCChhH-------------------------
Q 015165 185 VFKLLFV-YLHSPDHPDTPAFCEGTLCNEVLAA----FVNENFVSWGGSIRASEG------------------------- 234 (412)
Q Consensus 185 e~K~LlV-yLh~~~~~~s~~F~r~vL~~~~v~~----~l~~nfV~w~~dv~~~Eg------------------------- 234 (412)
.+||+++ ++..+.|..|.... +.+.+ |-+.++.+++.++++.+.
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl------~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~ 105 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEF------VSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQ 105 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHH------HHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTT
T ss_pred CCCEEEEEEEcCCCCcChHHHH------HHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCc
Confidence 4677554 44556666555444 23333 223478788887765431
Q ss_pred HHHHhhCCCC-------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHH
Q 015165 235 FKMSNSLKAS-------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (412)
Q Consensus 235 ~~va~~l~~~-------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~ 282 (412)
..+++.|++. .+|.++||++.. .|+....|.. +.++++..|...
T Consensus 106 ~~ia~~ygv~~~~~g~~~~p~~fIID~dG----~I~~~~~~~~~~gr~~~Ellr~I~al 160 (249)
T 3a2v_A 106 GTVARRLGLLHAESATHTVRGVFIVDARG----VIRTMLYYPMELGRLVDEILRIVKAL 160 (249)
T ss_dssp SHHHHHHTCCCTTCSSSCCEEEEEECTTS----BEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred hHHHHHhCCccccCCCcccceEEEECCCC----eEEEEEecCCcccchhHHHHHHHHHH
Confidence 2466778876 899999999842 3444455554 567777776543
No 232
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.01 E-value=0.69 Score=31.73 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
.+++|.+++++ |++. +.|+..|..++ |+|.|+.-.|+
T Consensus 9 ~~~~v~~L~~M-GF~~-~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMDM-GFTR-EHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHHH-HCCH-HHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcC-CHHHHHHHHHc
Confidence 46789999995 8888 89999999998 99999988775
No 233
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=86.57 E-value=1.8 Score=37.54 Aligned_cols=32 Identities=6% Similarity=-0.118 Sum_probs=21.9
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQK 281 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~ 281 (412)
+|...||++. ..++.+..|..+++++...|..
T Consensus 152 ~P~~~lid~~----G~i~~~~~g~~~~~~l~~~i~~ 183 (185)
T 2gs3_A 152 NFTKFLIDKN----GCVVKRYGPMEEPLVIEKDLPH 183 (185)
T ss_dssp SCCEEEECTT----SCEEEEECTTSCGGGGGGGHHH
T ss_pred cceEEEECCC----CCEEEeeCCCCCHHHHHHHHHH
Confidence 4777777763 3567777888888777665544
No 234
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=86.56 E-value=0.61 Score=34.51 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
.+.|..+.+.||..- ..|+..|+.+|||++.||.-.
T Consensus 10 ~~~Vk~LRe~TGag~-~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 10 KELLMKLRRKTGYSF-VNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp CHHHHHHHHHHCCCH-HHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHHH
Confidence 477899999999655 899999999999999999764
No 235
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=86.16 E-value=0.34 Score=40.74 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=18.2
Q ss_pred CCCceeEeecceecCCCCcccccccCC
Q 015165 385 GPNVTQVIFFLIFFPLSSMIFPLTFLQ 411 (412)
Q Consensus 385 ~~~~~~v~~~~~RlP~G~ri~~~~~~~ 411 (412)
..+.++|. ||||||+|+ .++|..
T Consensus 49 ~~~~t~Iq---IRlpdG~rl-~~rF~~ 71 (127)
T 1s3s_G 49 AEPTTNIQ---IRLADGGRL-VQKFNH 71 (127)
T ss_dssp TSCCCCEE---EEETTTTEE-EEECCS
T ss_pred CCCcEEEE---EECCCCCEE-EEEeCC
Confidence 34678999 999999998 667753
No 236
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=86.11 E-value=0.42 Score=35.31 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhC-CCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAH-DWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~-~W~le~Ai~~~~~~~ 45 (412)
..++|.+++++ |++. +.|+..|..+ +||+|.|+.-.|+..
T Consensus 9 ~~~~v~~L~~M-GF~~-~~a~~AL~~t~~~nve~A~ewLl~~~ 49 (64)
T 1whc_A 9 ELTALESLIEM-GFPR-GRAEKALALTGNQGIEAAMDWLMEHE 49 (64)
T ss_dssp CCCHHHHHHTT-TCCH-HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 35688999985 9888 8999999999 799999999998754
No 237
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=86.04 E-value=4.1 Score=36.37 Aligned_cols=34 Identities=9% Similarity=-0.081 Sum_probs=23.8
Q ss_pred CceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.|...||++. ..|+.+..|..+++++...|...+
T Consensus 173 ~p~tflID~~----G~i~~~~~g~~~~~~l~~~I~~ll 206 (208)
T 2f8a_A 173 NFEKFLVGPD----GVPLRRYSRRFQTIDIEPDIEALL 206 (208)
T ss_dssp TTCEEEECTT----SCEEEEECTTSCGGGGHHHHHHHH
T ss_pred CceEEEEcCC----CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 3667777763 356777888888888777776554
No 238
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=85.43 E-value=3 Score=38.29 Aligned_cols=46 Identities=9% Similarity=-0.040 Sum_probs=26.1
Q ss_pred HHHhhCCCCC---------CceEEEEeCCCCccceee---eeeecCCCHHHHHHHHHHHH
Q 015165 236 KMSNSLKASR---------YPFCAVVMPAANQRIALL---QQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 236 ~va~~l~~~~---------~P~l~lI~~~~~~~~~vl---~ri~G~~s~~~ll~~L~~~i 283 (412)
.+++.|++.. .|..+||++... +.-. ....+..+.++++..|....
T Consensus 118 ~vak~yGv~~~~~~~~G~~~p~tfvID~dG~--I~~~~~~~~~~~~pd~~evl~~L~~l~ 175 (224)
T 3keb_A 118 DFHKRYGVLITEYPLSGYTSPAIILADAANV--VHYSERLANTRDFFDFDAIEKLLQEGE 175 (224)
T ss_dssp THHHHTTCBCCSTTSTTCBCCEEEEECTTCB--EEEEEECSBTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCccccccccCCccCEEEEEcCCCE--EEEEEecCCCCCCCCHHHHHHHHHHhh
Confidence 4555666543 688888887421 2211 11233456788888776543
No 239
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.17 E-value=0.7 Score=35.11 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCC-CCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHD-WDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~-W~le~Ai~~~~~~~ 45 (412)
.+++|.+++++ |++. +.|+..|..++ ||+|.|+.-.|...
T Consensus 9 ~e~~v~~L~~M-GF~~-~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 9 DESVIIQLVEM-GFPM-DACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp CHHHHHHHHHH-SCCH-HHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 46789999995 9987 89999999998 68999999998754
No 240
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=85.05 E-value=5.5 Score=33.41 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCCCceEEEEeCCCCccceeeeeeecCC--CHHHHHHHHHHHH
Q 015165 242 KASRYPFCAVVMPAANQRIALLQQVEGPK--SPEEMLMILQKVI 283 (412)
Q Consensus 242 ~~~~~P~l~lI~~~~~~~~~vl~ri~G~~--s~~~ll~~L~~~i 283 (412)
++...|.+.||++. ..|+.+..|.. +++++++.|...+
T Consensus 132 ~~~~~p~~~lid~~----G~i~~~~~g~~~~~~~~l~~~l~~ll 171 (174)
T 1xzo_A 132 QVIHQSSFYLVGPD----GKVLKDYNGVENTPYDDIISDVKSAS 171 (174)
T ss_dssp SCCSCCEEEEECTT----SEEEEEEESSSSCCHHHHHHHHHHHT
T ss_pred eeeeeeEEEEECCC----CeEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 45678888888874 35677777876 4788888777654
No 241
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=84.62 E-value=7.3 Score=35.17 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=51.0
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH--------------------------HHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG--------------------------FKM 237 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg--------------------------~~v 237 (412)
.+|+++||+. ..+|..|..-...+- .-..+|-+.++.+++.++++.+. ..+
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p~l~--~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~ 132 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEIIEFN--KHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDI 132 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHHHHH--HTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCchHHHHHHHH--HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHH
Confidence 4678888888 777877765442210 01111222356666665554332 134
Q ss_pred HhhCCC-----CCCceEEEEeCCCCccceeeeeeecC----CCHHHHHHHHHHH
Q 015165 238 SNSLKA-----SRYPFCAVVMPAANQRIALLQQVEGP----KSPEEMLMILQKV 282 (412)
Q Consensus 238 a~~l~~-----~~~P~l~lI~~~~~~~~~vl~ri~G~----~s~~~ll~~L~~~ 282 (412)
++.|++ ..+|..+||++. ..|+.+..|. .+.++++..|...
T Consensus 133 ~~~ygv~~~~g~~~P~~~lID~~----G~I~~~~~g~~~~~~~~~ell~~l~~L 182 (221)
T 2c0d_A 133 SKNYNVLYDNSFALRGLFIIDKN----GCVRHQTVNDLPIGRNVQEVLRTIDSI 182 (221)
T ss_dssp HHHTTCEETTTEECEEEEEECTT----SBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred HHHcCCcccCCCccceEEEECCC----CeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 556666 357888888864 2455555553 3467777766543
No 242
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=84.39 E-value=7.4 Score=32.40 Aligned_cols=44 Identities=14% Similarity=-0.004 Sum_probs=27.9
Q ss_pred HHHhhCCCCCCc------eEEEEeCCCCccceeeeeeecCCC---HHHHHHHHHHHHH
Q 015165 236 KMSNSLKASRYP------FCAVVMPAANQRIALLQQVEGPKS---PEEMLMILQKVIE 284 (412)
Q Consensus 236 ~va~~l~~~~~P------~l~lI~~~~~~~~~vl~ri~G~~s---~~~ll~~L~~~ie 284 (412)
.++..|++...| ...|| +. ..|+.+..|..+ .+.++..|...++
T Consensus 102 ~~~~~~gv~~~p~~g~~~~~~li-~~----G~i~~~~~g~~~~~~~~~~~~~l~~~l~ 154 (159)
T 2a4v_A 102 EFIGLLGAKKTPLSGSIRSHFIF-VD----GKLKFKRVKISPEVSVNDAKKEVLEVAE 154 (159)
T ss_dssp HHHHHHTCBSSSSSCBCCEEEEE-ET----TEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccccCCccceEEEE-cC----CEEEEEEccCCccccHHHHHHHHHHHHH
Confidence 567778888877 67777 63 356666667543 3555666655554
No 243
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=83.98 E-value=4.8 Score=34.47 Aligned_cols=85 Identities=8% Similarity=-0.091 Sum_probs=49.7
Q ss_pred CcEEEEEEeCCC-CCChhHHHhhcCCChHHHHHHh-cCeEEEecccCChhH--------------------HHHHhhCCC
Q 015165 186 FKLLFVYLHSPD-HPDTPAFCEGTLCNEVLAAFVN-ENFVSWGGSIRASEG--------------------FKMSNSLKA 243 (412)
Q Consensus 186 ~K~LlVyLh~~~-~~~s~~F~r~vL~~~~v~~~l~-~nfV~w~~dv~~~Eg--------------------~~va~~l~~ 243 (412)
+|+++|++...+ |..|.... +.+.++.+ .++.+++.++++++. ..+++.|++
T Consensus 44 gk~vvl~F~~t~~C~~C~~~~------~~l~~l~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 117 (175)
T 1xvq_A 44 GKSVLLNIFPSVDTPVCATSV------RTFDERAAASGATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFGEDYGV 117 (175)
T ss_dssp TSCEEEEECSCCCSSCCCHHH------HHHHHHHHHTTCEEEEEESSCHHHHTTCC------CEEEEECTTSSHHHHTTC
T ss_pred CCEEEEEEEeCCCCchHHHHH------HHHHHHHhhcCCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHHHHhCC
Confidence 677888888766 77776554 33444433 456666666654332 246677887
Q ss_pred CCC---------ceEEEEeCCCCccceeeeeeec--C---CCHHHHHHHHH
Q 015165 244 SRY---------PFCAVVMPAANQRIALLQQVEG--P---KSPEEMLMILQ 280 (412)
Q Consensus 244 ~~~---------P~l~lI~~~~~~~~~vl~ri~G--~---~s~~~ll~~L~ 280 (412)
... |..+||++.. .|+.+..| . ...+++++.|.
T Consensus 118 ~~~~~~~~g~~~p~~~lid~~G----~I~~~~~g~~~~~~~~~~~~l~~l~ 164 (175)
T 1xvq_A 118 TIADGPMAGLLARAIVVIGADG----NVAYTELVPEIAQEPNYEAALAALG 164 (175)
T ss_dssp BBCSSTTTTSBCSEEEEECTTS----BEEEEEECSBTTCCCCHHHHHHHHH
T ss_pred cccccccCCcccceEEEECCCC----eEEEEEECCCcCCCCCHHHHHHHHH
Confidence 665 8999998742 45555543 2 23455554443
No 244
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=83.52 E-value=8 Score=33.53 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHH
Q 015165 237 MSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (412)
Q Consensus 237 va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~ 282 (412)
+++.|++. ..|..+||++. ..|+.+..|.. +.+++++.|...
T Consensus 103 ~~~~ygv~~~~~g~~~p~~~lID~~----G~i~~~~~~~~~~~~~~~~l~~~l~~l 154 (186)
T 1n8j_A 103 LTRNFDNMREDEGLADRATFVVDPQ----GIIQAIEVTAEGIGRDASDLLRKIKAA 154 (186)
T ss_dssp HHHHTTCEETTTTEECEEEEEECTT----SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred HHHHhCCccCCCCceeeEEEEECCC----CeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 44456654 36888888874 24555555543 467777766543
No 245
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=82.73 E-value=1.8 Score=30.27 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=37.1
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
+.++++.+.+++.=.-+..+++..|..+++|++.|++..+..
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 467889999999777777899999999999999999988765
No 246
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=82.69 E-value=2.3 Score=33.58 Aligned_cols=66 Identities=8% Similarity=-0.061 Sum_probs=40.0
Q ss_pred HHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCCh-h--HHHHHhhCCCCCCceEEEEe
Q 015165 178 ALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRAS-E--GFKMSNSLKASRYPFCAVVM 253 (412)
Q Consensus 178 Al~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~-E--g~~va~~l~~~~~P~l~lI~ 253 (412)
.++...+. +.++| ++.++|..|..+.. +.+-+...|.+...|.... + ...++..|++..+|.+ ++.
T Consensus 12 ~~~~~~~~-~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~ 80 (116)
T 2e7p_A 12 KAKELASS-APVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNV-FIG 80 (116)
T ss_dssp HHHHHHTS-SSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE-EET
T ss_pred HHHHHHcC-CCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEE-EEC
Confidence 33333333 34555 78899998887652 2222344566666665432 1 1346788999999998 553
No 247
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=82.54 E-value=5.6 Score=35.49 Aligned_cols=88 Identities=14% Similarity=-0.036 Sum_probs=49.4
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHH----hcCeEEEecccCChhH-------------------------
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRASEG------------------------- 234 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l----~~nfV~w~~dv~~~Eg------------------------- 234 (412)
.+|+++||+. ..+|..|..-. +.+.++. +.++.+++.++++++.
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~------~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~ 120 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEI------IAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDL 120 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHH------HHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECT
T ss_pred CCCeEEEEEECCCCCCCCHHHH------HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECC
Confidence 4677888887 77776555333 2233222 2356666666654432
Q ss_pred -HHHHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHHHH
Q 015165 235 -FKMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQKV 282 (412)
Q Consensus 235 -~~va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~~~ 282 (412)
..+++.|++. ..|..+||++. ..|+....|.. +.++++..|...
T Consensus 121 ~~~~~~~ygv~~~~~g~~~p~~~lID~~----G~I~~~~~g~~~~~~~~~ell~~l~~l 175 (211)
T 2pn8_A 121 THQISKDYGVYLEDSGHTLRGLFIIDDK----GILRQITLNDLPVGRSVDETLRLVQAF 175 (211)
T ss_dssp TSHHHHHTTCEETTTTEECEEEEEECTT----SBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred chHHHHHcCCcccCCCcccceEEEECCC----CEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 1344556663 57888888764 24455555543 567777766543
No 248
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=82.49 E-value=2.4 Score=36.27 Aligned_cols=95 Identities=8% Similarity=-0.020 Sum_probs=52.7
Q ss_pred hcCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH-------------------HHHhhCCC
Q 015165 184 SVFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF-------------------KMSNSLKA 243 (412)
Q Consensus 184 ~e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~-------------------~va~~l~~ 243 (412)
.++|+++++++ +.+|+.|..-...+ ++...+|-+.++.+++.++++++.. .+++.|++
T Consensus 31 ~~Gk~vvl~f~~~~~cp~C~~e~~~l--~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv 108 (164)
T 4gqc_A 31 KRGRPAVLIFFPAAFSPVCTKELCTF--RDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVIKLYNV 108 (164)
T ss_dssp HTSSCEEEEECSCTTCCEECSSCEES--CCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTC
T ss_pred cCCCEEEEEEeCCCCCCCcccchhhh--hhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHHHHcCC
Confidence 36788888887 77787765322111 1122233344777777777766543 34455554
Q ss_pred C----------CCceEEEEeCCCCccceeeeeee-----cCCCHHHHHHHHHHHHH
Q 015165 244 S----------RYPFCAVVMPAANQRIALLQQVE-----GPKSPEEMLMILQKVIE 284 (412)
Q Consensus 244 ~----------~~P~l~lI~~~~~~~~~vl~ri~-----G~~s~~~ll~~L~~~ie 284 (412)
. ..|...||++.. .|..+.. |..+.++++..|.....
T Consensus 109 ~~~~~~~~~~~~~p~tflID~~G----~I~~~~~~~~~~~~~~~~eil~~l~~l~~ 160 (164)
T 4gqc_A 109 YHEDLKGLKMVAKRAVFIVKPDG----TVAYKWVTDNPLNEPDYDEVVREANKIAG 160 (164)
T ss_dssp EEEEETTEEEEECCEEEEECTTS----BEEEEEECSCTTCCCCHHHHHHHHHHHHH
T ss_pred cccccccCcCCeeeEEEEECCCC----EEEEEEEeCCCCCCCCHHHHHHHHHHHhc
Confidence 2 246667777632 2332222 23467888887766543
No 249
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=81.93 E-value=17 Score=32.37 Aligned_cols=36 Identities=8% Similarity=-0.071 Sum_probs=24.6
Q ss_pred ceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
|...||++. ..|+.+..|..+++++...|...+.+.
T Consensus 160 ~ttflID~~----G~i~~~~~g~~~~~~l~~~I~~ll~~~ 195 (207)
T 2r37_A 160 FEKFLVGPD----GIPIMRWHHRTTVSNVKMDILSYMRRQ 195 (207)
T ss_dssp TCEEEECTT----SCEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ceEEEECCC----CcEEEEECCCCCHHHHHHHHHHHHhhc
Confidence 455666653 356777788888888887777776543
No 250
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.17 E-value=1.5 Score=34.13 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhC-CCCHHHHHhhhhCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAH-DWDLELAISSFTSSN 45 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~-~W~le~Ai~~~~~~~ 45 (412)
..++|.+++++ |++. +.|+..|..+ |||+|.|+.-.|...
T Consensus 29 ~e~~v~~L~~M-GF~~-~~a~~AL~~t~n~n~e~A~ewL~~h~ 69 (84)
T 1vek_A 29 NEEIVAQLVSM-GFSQ-LHCQKAAINTSNAGVEEAMNWLLSHM 69 (84)
T ss_dssp CHHHHHHHHHH-TCCH-HHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 46889999995 9998 8999999888 599999999998754
No 251
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=80.34 E-value=5.7 Score=34.21 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=16.4
Q ss_pred CceEEEEeCCCCccceeeeeeecCC---CHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEGPK---SPEEMLMILQ 280 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G~~---s~~~ll~~L~ 280 (412)
.|...||++.. .|+....|.. ..++++..|.
T Consensus 141 ~p~~~lID~~G----~I~~~~~~~~~~~~~~~il~~l~ 174 (179)
T 3ixr_A 141 ERSTFLIGPTH----RIVEAWRQVKVPGHAEEVLNKLK 174 (179)
T ss_dssp CCEEEEECTTS----BEEEEECSCCSTTHHHHHHHHHH
T ss_pred ceEEEEECCCC----EEEEEEcCCCCCCCHHHHHHHHH
Confidence 57888888742 3444444432 2344444443
No 252
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=78.54 E-value=6.2 Score=33.22 Aligned_cols=48 Identities=15% Similarity=-0.022 Sum_probs=26.8
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEG 234 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg 234 (412)
.+|+++|+++ ..+|..|..-...+- ....+|-+.++.+++.++++++.
T Consensus 29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~--~~~~~~~~~~~~~v~vs~d~~~~ 77 (157)
T 4g2e_A 29 KGKVVVLAFYPAAFTQVCTKEMCTFR--DSMAKFNQVNAVVLGISVDPPFS 77 (157)
T ss_dssp TTSCEEEEECSCTTCCC------CCS--CGGGGGGGCSSEEEEEESSCHHH
T ss_pred CCCeEEEEecCCCCCCccccchhhcc--cccccccccCceEeeecccchhH
Confidence 4688888887 778888765442221 12223434478888888777664
No 253
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=78.46 E-value=13 Score=31.47 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
+.+..+++..+|++.| . + . .+.|..+.+.|...|..+++
T Consensus 135 ~~a~~~gv~gtPt~~i-~---g---~---~~~G~~~~~~l~~~i~~~l~ 173 (175)
T 3gyk_A 135 ALAQKLGFNGTPSFVV-E---D---A---LVPGFVEQSQLQDAVDRARK 173 (175)
T ss_dssp HHHHHHTCCSSSEEEE-T---T---E---EECSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCEEEE-C---C---E---EeeCCCCHHHHHHHHHHHHh
Confidence 4567889999998775 2 2 1 34688999888888876653
No 254
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=78.02 E-value=12 Score=33.59 Aligned_cols=34 Identities=6% Similarity=-0.147 Sum_probs=23.6
Q ss_pred ceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHH
Q 015165 247 PFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIE 284 (412)
Q Consensus 247 P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie 284 (412)
|...||++. ..|+.+..|..+++++...|...+.
T Consensus 178 pttfLID~~----G~vv~~~~g~~~~~~l~~~I~~ll~ 211 (215)
T 2i3y_A 178 FEKFLVGPD----GIPVMRWSHRATVSSVKTDILAYLK 211 (215)
T ss_dssp TCEEEECTT----SCEEEEECTTSCHHHHHHHHHHHGG
T ss_pred ceEEEECCC----CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455666653 3567778888888888777776654
No 255
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=77.57 E-value=12 Score=34.17 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=24.6
Q ss_pred HHHhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHH
Q 015165 236 KMSNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQ 280 (412)
Q Consensus 236 ~va~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~ 280 (412)
.+++.|++. .+|...||++.. .|+.+..|.. +.++++..|.
T Consensus 152 ~v~~~ygv~~~~~g~~~p~~flID~~G----~I~~~~~~~~~~~~~~~eil~~l~ 202 (240)
T 3qpm_A 152 QISKDYGVYLEDQGHTLRGLFIIDEKG----VLRQITMNDLPVGRSVDETLRLVQ 202 (240)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTS----BEEEEEEECTTBCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCCccceEEEEcCCC----eEEEEEecCCCCCCCHHHHHHHHH
Confidence 456677766 678888888742 3444444433 3456665554
No 256
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.46 E-value=2.8 Score=31.20 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.4
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCC
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSN 45 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~ 45 (412)
+..+++.+++++.-.=|.+.....|+++++|++.||...+...
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms 59 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMN 59 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 3578899999997666667899999999999999999987643
No 257
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=77.32 E-value=10 Score=35.06 Aligned_cols=90 Identities=16% Similarity=-0.006 Sum_probs=47.4
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH--------------------------HH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF--------------------------KM 237 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~--------------------------~v 237 (412)
.+|+++|+++ ..+|+.|..-...+- ....+|=+.++.+++.++++.+.. .+
T Consensus 90 kGK~vvL~F~~a~~cp~C~~el~~l~--~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~v 167 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTEIIAFG--DRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQI 167 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHHH--HTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEECCCCCCchHHHHHHHH--HHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHH
Confidence 4688888888 666776654331110 111122223677777766654421 34
Q ss_pred HhhCCCC------CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHH
Q 015165 238 SNSLKAS------RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQ 280 (412)
Q Consensus 238 a~~l~~~------~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~ 280 (412)
++.|++. .+|..+||++.. .|+....|.. +.++++..|.
T Consensus 168 a~~ygv~~~~~g~~~p~tflID~~G----~I~~~~~~~~~~~~~~~eil~~L~ 216 (254)
T 3tjj_A 168 SKDYGVYLEDSGHTLRGLFIIDDKG----ILRQITLNDLPVGRSVDETLRLVQ 216 (254)
T ss_dssp HHHHTCEETTTTEECEEEEEECTTS----BEEEEEEECTTCCCCHHHHHHHHH
T ss_pred HHHcCCccccCCCccceEEEECCCC----eEEEEEecCCCCCCCHHHHHHHHH
Confidence 4555553 468888887642 3344444432 3456555553
No 258
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=76.30 E-value=17 Score=30.87 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=30.2
Q ss_pred hHHHHHhhCCC---------CCCceEEEEeCCCCccceeeeeeecC-CCHHHHHHHHHHHH
Q 015165 233 EGFKMSNSLKA---------SRYPFCAVVMPAANQRIALLQQVEGP-KSPEEMLMILQKVI 283 (412)
Q Consensus 233 Eg~~va~~l~~---------~~~P~l~lI~~~~~~~~~vl~ri~G~-~s~~~ll~~L~~~i 283 (412)
+...+++.|+. ...|.+.||++.. .|+....|. .+++++...|..+.
T Consensus 105 ~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G----~i~~~~~g~~~~~~~i~~~l~~~~ 161 (170)
T 3me7_A 105 DLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPEL----QIKDYIYGVNYNYLEFVNALRLAR 161 (170)
T ss_dssp HHHHHHHHTTCCCEEETTEEECCCEEEEECTTS----BEEEEEESSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCeEEecCCCccccCceEEEECCCC----eEEEEEeCCCCCHHHHHHHHHHhh
Confidence 34556666553 3457788888742 455556775 56888887776654
No 259
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=76.19 E-value=2.6 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
..++|.+++++ |++. +.|+..|..++||++.|+.-.|.+..
T Consensus 78 ~e~~v~~L~~M-GF~~-~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITSM-GFQR-NQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHHH-TSCH-HHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45789999985 9886 89999999999999999999987543
No 260
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=75.87 E-value=6.8 Score=30.58 Aligned_cols=77 Identities=13% Similarity=0.037 Sum_probs=48.8
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeee
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQV 266 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri 266 (412)
+..+|+++.++|..|.... .+|. -+..++-+...|+++++...++..|+ .+.|.+ ++.. . . + .
T Consensus 16 ~~~v~~f~~~~C~~C~~~~-~~L~------~l~~~i~~~~vdi~~~~~~el~~~~g-~~vP~l-~~~g---~-~--~-~- 78 (100)
T 1wjk_A 16 LPVLTLFTKAPCPLCDEAK-EVLQ------PYKDRFILQEVDITLPENSTWYERYK-FDIPVF-HLNG---Q-F--L-M- 78 (100)
T ss_dssp CCEEEEEECSSCHHHHHHH-HHTS------TTSSSSEEEEEETTSSTTHHHHHHSS-SSCSEE-EESS---S-E--E-E-
T ss_pred CCEEEEEeCCCCcchHHHH-HHHH------HhhhCCeEEEEECCCcchHHHHHHHC-CCCCEE-EECC---E-E--E-E-
Confidence 4567777888888887554 3333 12234667778888666677888999 999965 3433 1 1 1 1
Q ss_pred ecCCCHHHHHHHHH
Q 015165 267 EGPKSPEEMLMILQ 280 (412)
Q Consensus 267 ~G~~s~~~ll~~L~ 280 (412)
.|..++++|...|.
T Consensus 79 ~~g~~~~~l~~~l~ 92 (100)
T 1wjk_A 79 MHRVNTSKLEKQLR 92 (100)
T ss_dssp ESSCCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHH
Confidence 24567776655554
No 261
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=75.43 E-value=13 Score=33.88 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=29.4
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~ 235 (412)
.+||+++|+| .+.++-|..=+... ++...+|-+.++.+++.++++....
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~~f~~~g~~vigiS~Ds~~sh 100 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPTEIIAF--SEAAKKFEEQGAQVLFASTDSEYSL 100 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHHHH--HHHHHHHHHTTEEEEEEESSCHHHH
T ss_pred CCCeEEEEEEcCCCCCcCchhhhHH--HHhHHhhccCCceEEEeecCchhhH
Confidence 4799999999 45455444222111 0222333445899999999876643
No 262
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=71.63 E-value=6.1 Score=35.29 Aligned_cols=81 Identities=9% Similarity=0.091 Sum_probs=51.1
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcC--eE--EEecc--------------------------------
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN--FV--SWGGS-------------------------------- 228 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~n--fV--~w~~d-------------------------------- 228 (412)
+.|..+|.+.+++|+.|..|-. .+.++.+.+ ++ .|+..
T Consensus 85 ~~k~~vv~F~d~~Cp~C~~~~~------~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~ 158 (211)
T 1t3b_A 85 NEKHVVTVFMDITCHYCHLLHQ------QLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP 158 (211)
T ss_dssp TCSEEEEEEECTTCHHHHHHHT------THHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred CCCEEEEEEECCCCHhHHHHHH------HHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence 5788899999999988888873 344444432 22 22211
Q ss_pred ------cCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHH
Q 015165 229 ------IRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQ 280 (412)
Q Consensus 229 ------v~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~ 280 (412)
..-.+...++..+++..+|.+.+.. |. ++.|..++++|...|.
T Consensus 159 ~~~~~~~~v~~~~~l~~~~gV~gTPt~vi~n---G~------~~~G~~~~~~l~~~l~ 207 (211)
T 1t3b_A 159 KEVKTPNIVKKHYELGIQFGVRGTPSIVTST---GE------LIGGYLKPADLLRALE 207 (211)
T ss_dssp SSCCCSSHHHHHHHHHHHHTCCSSCEEECTT---SC------CCCSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCCcCCEEEEeC---CE------EecCCCCHHHHHHHHH
Confidence 0001335567889999999987622 21 3468888888776654
No 263
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=71.29 E-value=5.2 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~ 40 (412)
+++|++.++. |.+. +.|+..|..++||++.|..-
T Consensus 12 ~~~Ia~Lm~m-GFsr-~~ai~AL~~a~nnve~Aani 45 (52)
T 2ooa_A 12 DAKIAKLMGE-GYAF-EEVKRALEIAQNNVEVARSI 45 (52)
T ss_dssp HHHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCCH-HHHHHHHHHhCCCHHHHHHH
Confidence 4778888875 7777 89999999999999999764
No 264
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=68.34 E-value=5.2 Score=36.66 Aligned_cols=41 Identities=7% Similarity=-0.066 Sum_probs=21.3
Q ss_pred cEEEEEEe-CCCCCChhHHHhhcCCChHHHHHH----hcCeEEEecccCChh
Q 015165 187 KLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFV----NENFVSWGGSIRASE 233 (412)
Q Consensus 187 K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l----~~nfV~w~~dv~~~E 233 (412)
+|+++++| .+.|.-|..-. +.+.++. +.++-+.+.++++.+
T Consensus 30 ~~vvL~f~pa~~cpvC~~el------~~l~~l~~ef~~~~v~vigIS~D~~~ 75 (233)
T 2v2g_A 30 SWGVLFSHPRDFTPVSTTEL------GRVIQLEGDFKKRGVKLIALSCDNVA 75 (233)
T ss_dssp SEEEEEECSCSSCHHHHHHH------HHHHHTHHHHHHTTEEEEEEESSCHH
T ss_pred CeEEEEEECCCCCCCcHHHH------HHHHHHHHHHHHcCCEEEEEcCCCHH
Confidence 38888887 55555443322 2233322 236666666665543
No 265
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.04 E-value=4.2 Score=29.83 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCC-CHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDW-DLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W-~le~Ai~~~~~~~~ 46 (412)
..+.|.++++ .|++. +.|+..|..++| |+|.|+.-.|....
T Consensus 9 ~e~~v~~L~~-MGF~~-~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 9 SPSLLEPLLA-MGFPV-HTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp SCSSHHHHHH-TSCCH-HHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred CHHHHHHHHH-cCCCH-HHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 3457888888 59998 899999999865 99999999887643
No 266
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=67.92 E-value=13 Score=31.29 Aligned_cols=41 Identities=5% Similarity=-0.096 Sum_probs=25.0
Q ss_pred HHHhhCCCCC------CceEEEEeCCCCccceeeeeeec-----CCCHHHHHHHHH
Q 015165 236 KMSNSLKASR------YPFCAVVMPAANQRIALLQQVEG-----PKSPEEMLMILQ 280 (412)
Q Consensus 236 ~va~~l~~~~------~P~l~lI~~~~~~~~~vl~ri~G-----~~s~~~ll~~L~ 280 (412)
.++..|++.. .|...||++.. .|+.+..| ..+.+++++.|.
T Consensus 113 ~~~~~~gv~~~~~g~~~p~~~liD~~G----~i~~~~~~~~~~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 113 SFGENYGVVMEELRLLARAVFVLDADN----KVVYKEIVSEGTDFPDFDAALAAYK 164 (166)
T ss_dssp HHHHHHTCEETTTTEECCEEEEECTTC----BEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCceeeEEEEECCCC----eEEEEEEcCCcccCCCHHHHHHHHh
Confidence 5666777664 79999998742 34443222 345577776664
No 267
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=67.89 E-value=4.8 Score=29.66 Aligned_cols=55 Identities=5% Similarity=-0.042 Sum_probs=35.8
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
+++++.++|..|.... +.+.+++++ ++.+...|. +.+...++..|++.++|.+.+
T Consensus 4 ~~~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~gv~~vPt~~i 61 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAE------QAVANAIDPSKYTVEIVHLGT-DKARIAEAEKAGVKSVPALVI 61 (80)
T ss_dssp EEEEEECSCHHHHHHH------HHHHHHSCTTTEEEEEEETTT-CSSTHHHHHHHTCCEEEEEEE
T ss_pred eEEEeCCCCCchHHHH------HHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHcCCCcCCEEEE
Confidence 3455678898888776 334455654 355555554 224456778899999998865
No 268
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=67.86 E-value=14 Score=33.66 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=30.7
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
..+++.+++..+|.+++.... | ++ .++.|..+++.|...|......
T Consensus 189 ~~l~~~~gv~gtPt~vi~~~~-G-~~---~~~~G~~~~~~L~~~l~~~~~~ 234 (241)
T 1v58_A 189 EKLMDDLGANVTPAIYYMSKE-N-TL---QQAVGLPDQKTLNIIMGNKLQH 234 (241)
T ss_dssp HHHHHHHTCCSSCEEEEEETT-T-EE---EEEESSCCHHHHHHHTTC----
T ss_pred HHHHHHcCCCCCCEEEEECCC-C-CE---EEecCCCCHHHHHHHHHHHHHh
Confidence 456778999999998887642 2 22 3467999998888777655443
No 269
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}
Probab=66.44 E-value=38 Score=28.28 Aligned_cols=93 Identities=5% Similarity=-0.007 Sum_probs=50.8
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCC--CceEEEEeC-CCCccce
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASR--YPFCAVVMP-AANQRIA 261 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~--~P~l~lI~~-~~~~~~~ 261 (412)
..+..++++.+....+.+.+...+ ..+..-....++|..+|....+...+...|+.+. +|.++|+.. ..+.+.
T Consensus 31 ~~~~~~l~f~~~~~~~~~~~~~~~---~~vAk~fkgki~Fv~vd~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky- 106 (147)
T 3bj5_A 31 EIKTHILLFLPKSVSDYDGKLSNF---KTAAESFKGKILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKY- 106 (147)
T ss_dssp SCCEEEEEECCTTSSSHHHHHHHH---HHHHHTTTTTCEEEEECTTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEE-
T ss_pred CCceEEEEEecCCcHhHHHHHHHH---HHHHHHcCCceEEEEEecchHhHHHHHHHcCCCcccCCEEEEEecccccccC-
Confidence 334434445544444555555322 2344444446677677764445556778888875 999999886 222221
Q ss_pred eeeeeecCCCHHHHHHHHHHHH
Q 015165 262 LLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 262 vl~ri~G~~s~~~ll~~L~~~i 283 (412)
+. -.|..+++.+.+-+...+
T Consensus 107 -~~-~~~~~t~~~i~~Fv~d~l 126 (147)
T 3bj5_A 107 -KP-ESEELTAERITEFCHRFL 126 (147)
T ss_dssp -CC-SCCCCCHHHHHHHHHHHH
T ss_pred -CC-CcccCCHHHHHHHHHHHH
Confidence 11 126677766555555444
No 270
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=64.29 E-value=26 Score=31.41 Aligned_cols=43 Identities=9% Similarity=-0.051 Sum_probs=24.1
Q ss_pred cCcEEEEEEe-CCCCCChh-HHHhhcCCChHHHHH----HhcCe-EEEecccCChh
Q 015165 185 VFKLLFVYLH-SPDHPDTP-AFCEGTLCNEVLAAF----VNENF-VSWGGSIRASE 233 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~-~F~r~vL~~~~v~~~----l~~nf-V~w~~dv~~~E 233 (412)
.+|+++|+++ ..+|..|. .=. +.+.++ -+.++ .+++.++++++
T Consensus 32 ~gk~vvl~f~~a~~cp~C~~~e~------~~l~~~~~~~~~~~~~~vv~is~d~~~ 81 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCSSSHL------PRYNELAPVFKKYGVDDILVVSVNDTF 81 (241)
T ss_dssp TTSEEEEEEESCSSCHHHHHTHH------HHHHHHHHHHHHTTCCEEEEEESSCHH
T ss_pred CCCeEEEEEeCCCCCCCCCHHHH------HHHHHHHHHHHHCCCCEEEEEEcCCHH
Confidence 4677888887 66776665 222 222222 22366 67777766544
No 271
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=63.31 E-value=12 Score=35.60 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=57.3
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC--hhHHHHHhhCCCCCCceE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA--SEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~--~Eg~~va~~l~~~~~P~l 249 (412)
.|..+.++....++.+ +|+++.++|..|+.+. .+|.. . .+++-..-+|..+ .+...+++.+++..||.+
T Consensus 185 s~~~~~~la~~l~~~~--vV~F~A~WC~~Ck~l~-p~le~-----l-A~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~ 255 (291)
T 3kp9_A 185 PSPLAVGLAAHLRQIG--GTMYGAYWCPHCQDQK-ELFGA-----A-FDQVPYVECSPNGPGTPQAQECTEAGITSYPTW 255 (291)
T ss_dssp CCSTHHHHHHHHHHTT--CEEEECTTCHHHHHHH-HHHGG-----G-GGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEE
T ss_pred CCHHHHHHHHHhCCCC--EEEEECCCCHHHHHHH-HHHHH-----H-HHHcCEEEEeecCchhhHHHHHHHcCCcccCeE
Confidence 5666666666655555 6888899999999876 33321 1 1222234455322 236678999999999995
Q ss_pred EEEeCCCCccceeeeeeecCCCHHHHHHHH
Q 015165 250 AVVMPAANQRIALLQQVEGPKSPEEMLMIL 279 (412)
Q Consensus 250 ~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L 279 (412)
.+ . |. ++.|..+.+++.+.+
T Consensus 256 ~i-~---G~------~~~G~~~~~~L~~~l 275 (291)
T 3kp9_A 256 II-N---GR------TYTGVRSLEALAVAS 275 (291)
T ss_dssp EE-T---TE------EEESCCCHHHHHHHT
T ss_pred EE-C---CE------EecCCCCHHHHHHHH
Confidence 54 2 32 267999988876655
No 272
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=62.60 E-value=10 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhh
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~ 42 (412)
-+..|.++++. |.+. +.|+..|...+||+|.|..--.
T Consensus 9 ~e~~I~~L~~l-GF~r-~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 9 LSSEIERLMSQ-GYSY-QDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp SHHHHHHHHHH-TCCH-HHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHc-CCCH-HHHHHHHHHhcCCHHHHHHHHH
Confidence 34667888775 7777 8999999999999999977543
No 273
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=61.47 E-value=25 Score=33.59 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=49.7
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHh---cCeEEEecccCChhHH-------------------HHHhhCC
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVN---ENFVSWGGSIRASEGF-------------------KMSNSLK 242 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~---~nfV~w~~dv~~~Eg~-------------------~va~~l~ 242 (412)
.+|++++|++ |. ..|. -|. .+..+|-+ +++.+.|.++++.+.. .+++.|+
T Consensus 23 ~Gk~vvl~F~-p~-~~tp-~C~-----~e~~~~~~~~~~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~~~yg 94 (322)
T 4eo3_A 23 YGKYTILFFF-PK-AGTS-GST-----REAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFN 94 (322)
T ss_dssp TTSEEEEEEC-SS-TTSH-HHH-----HHHHHHHHSCCTTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHHHHTT
T ss_pred CCCeEEEEEE-CC-CCCC-CCH-----HHHHHHHHHhhCCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHHHhcC
Confidence 3678888887 21 1221 132 23344432 3567777777665543 4566777
Q ss_pred C----CCCceEEEEeCCCCccceeeeeeecC---CCHHHHHHHHHHHHHh
Q 015165 243 A----SRYPFCAVVMPAANQRIALLQQVEGP---KSPEEMLMILQKVIEE 285 (412)
Q Consensus 243 ~----~~~P~l~lI~~~~~~~~~vl~ri~G~---~s~~~ll~~L~~~ie~ 285 (412)
+ ..+|...||++. | .|.....+. -.+++++..|+...+.
T Consensus 95 v~~~~~~~r~tfiId~~-G---~i~~~~~~v~~~~h~~~~l~~~~~~~~~ 140 (322)
T 4eo3_A 95 VLENGKTVRSTFLIDRW-G---FVRKEWRRVKVEGHVQEVKEALDRLIEE 140 (322)
T ss_dssp CEETTEECCEEEEECTT-S---BEEEEEESCCSTTHHHHHHHHHHHHHHH
T ss_pred CCCCCcCccEEEEECCC-C---EEEEEEeCCCccccHHHHHHHHhhhchh
Confidence 6 356777888874 2 222222332 2367888888776643
No 274
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=61.39 E-value=10 Score=34.06 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
....|..+.+.||.. +-.|...|..++||++.|+.--
T Consensus 3 ~a~~VKeLRe~TGag-mmdCKkAL~e~~GD~ekAie~L 39 (196)
T 1aip_C 3 QMELIKKLREATGAG-MMDVKRALEDAGWDEEKAVQLL 39 (196)
T ss_dssp HHHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hHHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHH
Confidence 367889999999955 5799999999999999999764
No 275
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=61.28 E-value=49 Score=33.50 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=57.2
Q ss_pred cCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeee
Q 015165 185 VFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQ 264 (412)
Q Consensus 185 e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ 264 (412)
..+..++++.+++|..|..+.. +| +.+ ...+.++-+...|+. +...++..|++.+.|.+.+ . + +++.
T Consensus 116 ~~~~~i~~f~a~~C~~C~~~~~-~l--~~~-a~~~~~v~~~~vd~~--~~~~~~~~~~i~svPt~~i-~---g---~~~~ 182 (521)
T 1hyu_A 116 DGDFEFETYYSLSCHNCPDVVQ-AL--NLM-AVLNPRIKHTAIDGG--TFQNEITERNVMGVPAVFV-N---G---KEFG 182 (521)
T ss_dssp CSCEEEEEEECTTCSSHHHHHH-HH--HHH-HHHCTTEEEEEEETT--TCHHHHHHTTCCSSSEEEE-T---T---EEEE
T ss_pred CCCcceEEEECCCCcCcHHHHH-HH--HHH-HhHcCceEEEEEech--hhHHHHHHhCCCccCEEEE-C---C---EEEe
Confidence 4567788888999999998873 22 122 122336777777776 4456788999999999866 2 2 2333
Q ss_pred eeecCCCHHHHHHHHHHH
Q 015165 265 QVEGPKSPEEMLMILQKV 282 (412)
Q Consensus 265 ri~G~~s~~~ll~~L~~~ 282 (412)
+ |..+.+++...|...
T Consensus 183 ~--G~~~~~~l~~~l~~~ 198 (521)
T 1hyu_A 183 Q--GRMTLTEIVAKVDTG 198 (521)
T ss_dssp E--SCCCHHHHHHHHCCS
T ss_pred c--CCCCHHHHHHHHhhc
Confidence 3 889988888877543
No 276
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=61.12 E-value=45 Score=30.26 Aligned_cols=49 Identities=12% Similarity=0.002 Sum_probs=29.7
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHH
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGF 235 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~ 235 (412)
.+||+++|+| .+.++-|..=+... ++...+|-+.|+.++|+++++.+..
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~E~~~f--~~~~~eF~~~g~~vigiS~Ds~~sh 104 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPTEVIAF--SDSVSRFNELNCEVLACSIDSEYAH 104 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCHHHHHH--HTTHHHHHTTTEEEEEEESSCHHHH
T ss_pred CCCEEEEEEecccCCCCCchhHhhH--HHHHhhhccCCcEEEEeeCCchhhH
Confidence 4799999999 44444443222111 1223344445999999999886543
No 277
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.52 E-value=1.6e+02 Score=30.00 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=1.2
Q ss_pred hCCCCC
Q 015165 377 SLGAEP 382 (412)
Q Consensus 377 ~lp~EP 382 (412)
.+..-|
T Consensus 580 ~~~~~~ 585 (597)
T 3oja_B 580 KKNRNP 585 (597)
T ss_dssp TTC---
T ss_pred HhcCCC
Confidence 443333
No 278
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=57.81 E-value=67 Score=28.95 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=55.7
Q ss_pred ccCCHHHHHHHHH-hcCcEEEEEEeCCC--CCChhHHHhhcCCChHHHHHHh---cC--eEEEecccCChhHHHHHhhCC
Q 015165 171 VSEGFMDALQRSR-SVFKLLFVYLHSPD--HPDTPAFCEGTLCNEVLAAFVN---EN--FVSWGGSIRASEGFKMSNSLK 242 (412)
Q Consensus 171 ~~gs~~eAl~~Ak-~e~K~LlVyLh~~~--~~~s~~F~r~vL~~~~v~~~l~---~n--fV~w~~dv~~~Eg~~va~~l~ 242 (412)
+.-...+.|+.-. +-.++++|.+..++ |..|..+. .+| +++.+.-+ .. +.|...|+++ .-.++..|+
T Consensus 9 ~~~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~-~~l--~ela~~~~~~~~~~~v~~~~vd~d~--~~~~~~~~g 83 (243)
T 2hls_A 9 LSEDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTL-RLM--KLFEEESPTRNGGKLLKLNVYYRES--DSDKFSEFK 83 (243)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHH-HHH--HHHHHHSCEETTEESEEEEEEETTT--THHHHHHTT
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHH-HHH--HHHHHhccCCCCCceeEEEEecCCc--CHHHHHhcC
Confidence 3444444444433 33356777777677 77776553 333 23333311 11 5555556543 346899999
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
++.+|.+.+. . + ..+..|..+.+++...+...+
T Consensus 84 v~~~Pt~~i~-~--g-----~~~~~G~~~~~~l~~fv~~~l 116 (243)
T 2hls_A 84 VERVPTVAFL-G--G-----EVRWTGIPAGEEIRALVEVIM 116 (243)
T ss_dssp CCSSSEEEET-T--T-----TEEEESCCCTTHHHHHHHHHH
T ss_pred CCcCCEEEEE-C--C-----ceeEcCCCcHHHHHHHHHHHH
Confidence 9999999887 2 2 234557666555555444433
No 279
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=56.93 E-value=20 Score=30.02 Aligned_cols=17 Identities=18% Similarity=-0.025 Sum_probs=10.0
Q ss_pred CcEEEEEEe-CCCCCChh
Q 015165 186 FKLLFVYLH-SPDHPDTP 202 (412)
Q Consensus 186 ~K~LlVyLh-~~~~~~s~ 202 (412)
+|+++||+. +.+|..|.
T Consensus 43 gk~vvl~f~~~~~c~~C~ 60 (165)
T 1q98_A 43 SKRKVLNIFPSIDTGVCA 60 (165)
T ss_dssp TSEEEEEECSCSCSSCCC
T ss_pred CCeEEEEEECCCCCCccH
Confidence 466666665 45565554
No 280
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=55.96 E-value=24 Score=29.60 Aligned_cols=32 Identities=3% Similarity=-0.087 Sum_probs=19.5
Q ss_pred CceEEEEeCCCCccceeeeeeec-----CCCHHHHHHHHHH
Q 015165 246 YPFCAVVMPAANQRIALLQQVEG-----PKSPEEMLMILQK 281 (412)
Q Consensus 246 ~P~l~lI~~~~~~~~~vl~ri~G-----~~s~~~ll~~L~~ 281 (412)
.|...||++.. .|+.+..| ..+++++++.|..
T Consensus 133 ~p~~~liD~~G----~i~~~~~~~~~~~~~~~~~ll~~l~~ 169 (171)
T 2yzh_A 133 ARAVFIIDKEG----KVAYVQLVPEITEEPNYDEVVNKVKE 169 (171)
T ss_dssp CCEEEEECTTS----BEEEEEECSBTTSCCCCHHHHHHHHH
T ss_pred eeEEEEEcCCC----eEEEEEeCCCcCCCCCHHHHHHHHHh
Confidence 57888887642 34444443 3456788877754
No 281
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=54.56 E-value=48 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=9.4
Q ss_pred HHHhhhHHHHHHHHHH
Q 015165 282 VIEESNPALLQARLDA 297 (412)
Q Consensus 282 ~ie~~~~~L~~~r~er 297 (412)
...-++|..+..|.|.
T Consensus 33 ~~a~~dPd~vv~RQEA 48 (89)
T 2q2f_A 33 AAAAVEPDVVVKRQEA 48 (89)
T ss_dssp HHHTTSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHH
Confidence 3444677777665543
No 282
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=53.75 E-value=14 Score=35.29 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=32.6
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhC
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTS 43 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~ 43 (412)
...|.++.+.||.. +-.|+..|..++||+|.|+.--=.
T Consensus 5 a~~VKeLRe~TGag-mmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 5 KELLMKLRRKTGYS-FINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46789999999954 579999999999999999986643
No 283
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=53.72 E-value=18 Score=32.48 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=18.1
Q ss_pred CCceEEEEeCCCCccceeeeeeecC----CCHHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGP----KSPEEMLMILQ 280 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~----~s~~~ll~~L~ 280 (412)
..|.+.||++.. .|.....|. .+.++++..|.
T Consensus 127 ~~p~~flID~~G----~I~~~~~~~~~~g~~~~ell~~i~ 162 (220)
T 1xcc_A 127 TCRCLFFISPEK----KIKATVLYPATTGRNAHEILRVLK 162 (220)
T ss_dssp ECEEEEEECTTS----BEEEEEEECTTBCCCHHHHHHHHH
T ss_pred ccceEEEECCCC----EEEEEEecCCCCCCCHHHHHHHHH
Confidence 368888888742 334444333 24666666554
No 284
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=52.73 E-value=14 Score=29.60 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhh
Q 015165 5 ADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISS 40 (412)
Q Consensus 5 ~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~ 40 (412)
.+.|.--++=||++. +.|+..|..|+||+-.||-.
T Consensus 66 ~edi~lv~~q~~vs~-~~A~~aL~~~~gDiv~Ai~~ 100 (102)
T 1tr8_A 66 EDDIELVMNQTGASR-EDATRALQETGGDLAEAIMR 100 (102)
T ss_dssp HHHHHHHHHHHCCCH-HHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCH-HHHHHHHHHcCCCHHHHHHH
Confidence 356777778899888 89999999999999999853
No 285
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=52.59 E-value=23 Score=26.92 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=43.4
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeeeecC
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGP 269 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~ 269 (412)
++++..++|..|.... .+.+-+...+ +...||++.. .++..|++. .|.+.+ . .| ..+. |.
T Consensus 3 vv~f~a~~C~~C~~~~-------~~L~~~~~~~-~~~vdid~~~--~l~~~~g~~-vPtl~~--~-~G---~~v~---g~ 62 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAV-------EALAQARAGA-FFSVFIDDDA--ALESAYGLR-VPVLRD--P-MG---RELD---WP 62 (87)
T ss_dssp EEEEECSSCHHHHHHH-------HHHHHTTCCC-EEEEECTTCH--HHHHHHTTT-CSEEEC--T-TC---CEEE---SC
T ss_pred EEEEECCCCchHHHHH-------HHHHHHHHhh-eEEEECCCCH--HHHHHhCCC-cCeEEE--E-CC---EEEe---CC
Confidence 5677788888887554 1222222222 3457777543 366678887 998776 2 23 2232 78
Q ss_pred CCHHHHHHHHHH
Q 015165 270 KSPEEMLMILQK 281 (412)
Q Consensus 270 ~s~~~ll~~L~~ 281 (412)
.+.++|.+.|..
T Consensus 63 ~~~~~L~~~l~~ 74 (87)
T 1ttz_A 63 FDAPRLRAWLDA 74 (87)
T ss_dssp CCHHHHHHHHHT
T ss_pred CCHHHHHHHHHH
Confidence 888877666653
No 286
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=52.52 E-value=78 Score=28.20 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=18.3
Q ss_pred CCceEEEEeCCCCccceeeeeeecCC----CHHHHHHHHH
Q 015165 245 RYPFCAVVMPAANQRIALLQQVEGPK----SPEEMLMILQ 280 (412)
Q Consensus 245 ~~P~l~lI~~~~~~~~~vl~ri~G~~----s~~~ll~~L~ 280 (412)
..|.++||++.. .|+....|.. +.++++..|.
T Consensus 130 ~~p~~fiID~~G----~I~~~~~~~~~~gr~~~eil~~i~ 165 (224)
T 1prx_A 130 TARVVFVFGPDK----KLKLSILYPATTGRNFDEILRVVI 165 (224)
T ss_dssp TCCEEEEECTTS----BEEEEEECCTTBCCCHHHHHHHHH
T ss_pred cceEEEEECCCC----EEEEEEecCCCCCCCHHHHHHHHH
Confidence 478888888742 3444444433 4555555543
No 287
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=50.38 E-value=28 Score=28.91 Aligned_cols=41 Identities=5% Similarity=-0.170 Sum_probs=23.7
Q ss_pred HHHhhCCCCC------CceEEEEeCCCCccceeeeeeecC-----CCHHHHHHHHH
Q 015165 236 KMSNSLKASR------YPFCAVVMPAANQRIALLQQVEGP-----KSPEEMLMILQ 280 (412)
Q Consensus 236 ~va~~l~~~~------~P~l~lI~~~~~~~~~vl~ri~G~-----~s~~~ll~~L~ 280 (412)
.++..|++.. .|...||++. ..|+.+..|. .+.+++++.|.
T Consensus 110 ~~~~~~gv~~~~~g~~~p~~~liD~~----G~i~~~~~g~~~~~~~~~~~~l~~l~ 161 (163)
T 1psq_A 110 SFGRDYALLINEWHLLARAVFVLDTD----NTIRYVEYVDNINSEPNFEAAIAAAK 161 (163)
T ss_dssp HHHHHHTCBCTTTCSBCCEEEEECTT----CBEEEEEECSBTTSCCCHHHHHHHHH
T ss_pred HHHHHhCCccccCCceEEEEEEEcCC----CeEEEEEecCCcCCCCCHHHHHHHHH
Confidence 4555566542 3888888864 2455555553 23477776664
No 288
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=48.61 E-value=16 Score=38.08 Aligned_cols=8 Identities=50% Similarity=0.563 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 015165 303 NMRLREEQ 310 (412)
Q Consensus 303 ~R~lreeQ 310 (412)
.++|++-|
T Consensus 341 ~~~~~~~~ 348 (575)
T 2i1j_A 341 QDRLRQMQ 348 (575)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444333
No 289
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=47.44 E-value=27 Score=29.16 Aligned_cols=17 Identities=12% Similarity=0.053 Sum_probs=9.3
Q ss_pred CcEEEEEEe-CCCCCChh
Q 015165 186 FKLLFVYLH-SPDHPDTP 202 (412)
Q Consensus 186 ~K~LlVyLh-~~~~~~s~ 202 (412)
+|+++|++. +.+|..|.
T Consensus 35 gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 35 GKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TSEEEEEEESCTTCHHHH
T ss_pred CCcEEEEEeCCCCCCCCC
Confidence 556666665 45554444
No 290
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=47.07 E-value=37 Score=29.70 Aligned_cols=43 Identities=19% Similarity=-0.041 Sum_probs=21.6
Q ss_pred cCcEEEEEEe-CCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh
Q 015165 185 VFKLLFVYLH-SPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE 233 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E 233 (412)
.+|+++|++. +.+|..|..-. +.+.++.+ .++.+++.++++++
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~------~~l~~l~~~~~~v~vv~Is~D~~~ 122 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASV------RKFNQLAGELENTVVLCISSDLPF 122 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHH------HHHHHHHHTSTTEEEEEEESSCHH
T ss_pred CCCcEEEEEECCCCCchhHHHH------HHHHHHHHHhCCCEEEEEECCCHH
Confidence 3567777776 45666655433 22333322 35555555555443
No 291
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=46.78 E-value=44 Score=26.63 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=47.0
Q ss_pred EEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhCCCCCCceEEEEeCCCCccceeeeee
Q 015165 188 LLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSLKASRYPFCAVVMPAANQRIALLQQV 266 (412)
Q Consensus 188 ~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri 266 (412)
..+|++..++|..|.... +-+.++..+ ++-+-..||++.. .++..|++. .|.+.++.. + .++ .
T Consensus 30 ~~vv~y~~~~C~~C~~a~------~~L~~l~~e~~i~~~~vDId~d~--~l~~~ygv~-VP~l~~~~d--G---~~v--~ 93 (107)
T 2fgx_A 30 RKLVVYGREGCHLCEEMI------ASLRVLQKKSWFELEVINIDGNE--HLTRLYNDR-VPVLFAVNE--D---KEL--C 93 (107)
T ss_dssp CCEEEEECSSCHHHHHHH------HHHHHHHHHSCCCCEEEETTTCH--HHHHHSTTS-CSEEEETTT--T---EEE--E
T ss_pred cEEEEEeCCCChhHHHHH------HHHHHHHHhcCCeEEEEECCCCH--HHHHHhCCC-CceEEEEEC--C---EEE--E
Confidence 347778888998888665 222233332 4666677887543 356678886 998865542 2 222 2
Q ss_pred ecCCCHHHHHHHH
Q 015165 267 EGPKSPEEMLMIL 279 (412)
Q Consensus 267 ~G~~s~~~ll~~L 279 (412)
.|..+.++|.+.|
T Consensus 94 ~g~~~~~~L~~~L 106 (107)
T 2fgx_A 94 HYFLDSDVIGAYL 106 (107)
T ss_dssp CSSCCCHHHHHHH
T ss_pred ecCCCHHHHHHHh
Confidence 4778888766554
No 292
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=46.52 E-value=45 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
-++.|.|-|.+.....-+..+.=|++.|-|+-.||...+.-
T Consensus 9 Pe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 9 PEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp CHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 35788999999988887999999999999999999988753
No 293
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=46.28 E-value=17 Score=35.82 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
.+++|.+++++ |++. +.|+..|..++||++.|+.-.|.|
T Consensus 168 ~~~~i~~l~~M-Gf~~-~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 168 YETMLTEIMSM-GYER-ERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp HHHHHHHHHTT-TCCS-HHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred hHHHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 66788888876 8898 899999999999999999999876
No 294
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.13 E-value=2.9e+02 Score=34.97 Aligned_cols=20 Identities=10% Similarity=0.066 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCcEEEEEEe
Q 015165 175 FMDALQRSRSVFKLLFVYLH 194 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh 194 (412)
+..++..|--++|..+..+.
T Consensus 1692 Lk~l~~~aG~~~~~~vFL~t 1711 (3245)
T 3vkg_A 1692 LRMLLKRAGCKEEKICFIFD 1711 (3245)
T ss_dssp HHHHHHHHHTSCCCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEe
Confidence 34455555556666554444
No 295
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=45.05 E-value=41 Score=28.49 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=10.9
Q ss_pred cCcEEEEEEe-CCCCCChhH
Q 015165 185 VFKLLFVYLH-SPDHPDTPA 203 (412)
Q Consensus 185 e~K~LlVyLh-~~~~~~s~~ 203 (412)
.+|+++|++. ..+|..|..
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~ 49 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSK 49 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCH
Confidence 3566666665 556655553
No 296
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=44.62 E-value=72 Score=27.11 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHh
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~ 285 (412)
+.+..+++...|++.| .+ +. +-...|..+.+.|...|...+++
T Consensus 143 ~~a~~~gv~gtPt~~v-ng----~~--~~~~~G~~~~e~l~~~i~~l~~k 185 (192)
T 3h93_A 143 KLAMAYQVTGVPTMVV-NG----KY--RFDIGSAGGPEETLKLADYLIEK 185 (192)
T ss_dssp HHHHHHTCCSSSEEEE-TT----TE--EEEHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCeEEE-CC----EE--EecccccCCHHHHHHHHHHHHHH
Confidence 3456789999998765 32 22 21234777888888877766644
No 297
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=44.11 E-value=1.4e+02 Score=24.93 Aligned_cols=37 Identities=5% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCCceEEEEeCCCCccceeeeeeecC--CCHHHHHHHHHHHH
Q 015165 243 ASRYPFCAVVMPAANQRIALLQQVEGP--KSPEEMLMILQKVI 283 (412)
Q Consensus 243 ~~~~P~l~lI~~~~~~~~~vl~ri~G~--~s~~~ll~~L~~~i 283 (412)
+.+.|.+.||++.+ .|+....|. .+.++++..|+..+
T Consensus 131 ~~H~~~~~liD~~G----~i~~~~~g~~~~~~~~l~~~ik~Ll 169 (170)
T 4hde_A 131 VIHGTSFYLIDQNG----KVMKKYSGISNTPYEDIIRDMKRLA 169 (170)
T ss_dssp CBCCCEEEEECTTS----CEEEEEESSSSCCHHHHHHHHHHHH
T ss_pred EEeeeEEEEEcCCC----eEEEEECCCCCCCHHHHHHHHHHHh
Confidence 33457888888742 455556664 45678888776654
No 298
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.40 E-value=1e+02 Score=24.82 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCC-hhHH--HHHhhCCCCCCceE
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRA-SEGF--KMSNSLKASRYPFC 249 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~-~Eg~--~va~~l~~~~~P~l 249 (412)
-...+.+..+.+..+. +| +..++|..|..... +.+-++-.|..+-.|... ...+ .++..+++.++|.+
T Consensus 14 ~~~~~~~~~~i~~~~v-vv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l 84 (130)
T 2cq9_A 14 TAPVNQIQETISDNCV-VI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRI 84 (130)
T ss_dssp CCHHHHHHHHHHHSSE-EE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEE
T ss_pred HHHHHHHHHHHcCCcE-EE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEE
Confidence 4556666666655553 34 45578887765431 222223356665555442 1222 36778899999987
Q ss_pred E
Q 015165 250 A 250 (412)
Q Consensus 250 ~ 250 (412)
.
T Consensus 85 ~ 85 (130)
T 2cq9_A 85 F 85 (130)
T ss_dssp E
T ss_pred E
Confidence 4
No 299
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=42.43 E-value=24 Score=28.98 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=30.7
Q ss_pred HHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCC
Q 015165 6 DKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSS 44 (412)
Q Consensus 6 ~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~ 44 (412)
++|.+|+++ |++. +.|+..|..++.|++.||.-.|..
T Consensus 78 ~~v~~L~eM-GF~~-~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 78 QLMSKFKEM-GFEL-KDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHT-TCCH-HHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCH-HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 457777765 7777 899999999999999999987753
No 300
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=42.38 E-value=31 Score=24.95 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=34.4
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHh--cCeEEEecccCChh--HHHHHhhCC--CCCCceEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVN--ENFVSWGGSIRASE--GFKMSNSLK--ASRYPFCA 250 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~--~nfV~w~~dv~~~E--g~~va~~l~--~~~~P~l~ 250 (412)
++++..++|..|..... +| .++-. .++-+...|+.+.. .-.++..++ +.++|.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l-----~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~ 63 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-LA-----EKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIF 63 (85)
T ss_dssp EEEECCTTSTHHHHHHH-HH-----HHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEE
T ss_pred EEEEeCCCCCCHHHHHH-HH-----HHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEE
Confidence 45667788888886652 22 22211 35667777876432 135677788 89999973
No 301
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=40.53 E-value=1.9e+02 Score=27.18 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=52.5
Q ss_pred CCccCCHHHHHHHHHhcC-cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChhHHHHH----hhC
Q 015165 169 NFVSEGFMDALQRSRSVF-KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASEGFKMS----NSL 241 (412)
Q Consensus 169 ~F~~gs~~eAl~~Ak~e~-K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~Eg~~va----~~l 241 (412)
.+-..++.+. ..... +..++.++++++..+..+.. .| ..+..-+.. .+.|--.|...- + .+. +.+
T Consensus 230 elt~~~~~~~---~~~~~~~~~~l~f~~~~~~~~~~~~~-~~--~~vA~~~~~~~~~~f~~id~~~~-~-~~~~~~~~~~ 301 (350)
T 1sji_A 230 RLRPEDMFET---WEDDLNGIHIVAFAERSDPDGYEFLE-IL--KQVARDNTDNPDLSIVWIDPDDF-P-LLVAYWEKTF 301 (350)
T ss_dssp ECCTTTHHHH---HHSCSSSEEEEEECCTTSHHHHHHHH-HH--HHHHHHGGGCSSCCEEEECGGGC-H-HHHHHHHHHC
T ss_pred hcChhhHHHH---hcCCCCCcEEEEEEcCCCccHHHHHH-HH--HHHHHHhCCCCceEEEEECchhh-H-HHHHHHHhhc
Confidence 3444555543 33332 43333355554444555553 22 234443432 444333443322 2 233 678
Q ss_pred CCC-CCceEEEEeCCCCcccee-eeeeecCCCHHHHHHHHHHHH
Q 015165 242 KAS-RYPFCAVVMPAANQRIAL-LQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 242 ~~~-~~P~l~lI~~~~~~~~~v-l~ri~G~~s~~~ll~~L~~~i 283 (412)
+++ .+|.++++..+.+.+..+ .....|..+++.+.+-+..++
T Consensus 302 gi~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~ 345 (350)
T 1sji_A 302 KIDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVL 345 (350)
T ss_dssp CSCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHH
T ss_pred CCCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHHh
Confidence 776 589999998754322221 111135778877666666554
No 302
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=40.31 E-value=16 Score=25.86 Aligned_cols=40 Identities=18% Similarity=0.213 Sum_probs=31.3
Q ss_pred cHHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhh
Q 015165 3 DVADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFT 42 (412)
Q Consensus 3 ~~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~ 42 (412)
++.+.+.+++++.-.=|.+....+|..++++++.||...+
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLL 50 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC---
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999888878999999999999999987654
No 303
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=39.61 E-value=63 Score=24.13 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNP 46 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~ 46 (412)
.+++|.|-+++.--=...-....|..++-|+|.+|...+++.-
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 5677888888865333466999999999999999999999754
No 304
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.30 E-value=22 Score=25.92 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhCCCChHHHHHHHHhCCCCHHHHHhhhhCCCCC
Q 015165 4 VADKLAYFQAITGLEDPDLCTEILQAHDWDLELAISSFTSSNPP 47 (412)
Q Consensus 4 ~~~~l~~f~~iT~~~~~~~a~~~L~~~~W~le~Ai~~~~~~~~~ 47 (412)
..+.|.+..+ .|+.. +.|+..|...+-|+|.|+.=.|....|
T Consensus 19 e~e~V~~Lvs-MGFs~-~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 19 ERQCVETVVN-MGYSY-ECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HHHHHHHHHH-HHCCH-HHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHH-cCCCH-HHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 3456666664 46777 899999999999999999988876543
No 305
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=38.10 E-value=75 Score=27.57 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=33.0
Q ss_pred HHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 236 KMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 236 ~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
+.+..+++..+|++.|-.. + ..+....|..+++.++..|...+++.
T Consensus 160 ~~a~~~gv~g~Pt~~v~~~--~---~~~~~~~g~~~~e~~~~~i~~~~~~~ 205 (208)
T 3kzq_A 160 SLAKSLGVNSYPSLVLQIN--D---AYFPIEVDYLSTEPTLKLIRERIIEN 205 (208)
T ss_dssp HHHHHTTCCSSSEEEEEET--T---EEEEECCCSSCSHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccEEEEEEC--C---EEEEeeCCCCCHHHHHHHHHHHHhcc
Confidence 5567899999999876543 1 22333568889999999988877553
No 306
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=35.00 E-value=1.3e+02 Score=26.60 Aligned_cols=94 Identities=10% Similarity=0.049 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCC----CCCccCCHHHHHHH-HHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEE
Q 015165 151 EAMEFVAVFERDYGNVK----PNFVSEGFMDALQR-SRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSW 225 (412)
Q Consensus 151 ~~~~F~~~f~~~yg~~~----p~F~~gs~~eAl~~-Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w 225 (412)
....++..+-....... |++-..+-.+.... .....+++.+++.+.++.-.. ....+++...-|..
T Consensus 117 ~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~f~~~~~~~~~---------~~~~d~~~~~~i~v 187 (244)
T 3q6o_A 117 TLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAR---------EVALDLSQHKGVAV 187 (244)
T ss_dssp HHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEEEECTTCCHHH---------HHHHHTTTCTTEEE
T ss_pred HHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEEEEECCcchHH---------HHHHHhccCCceEE
Confidence 33556666555443322 33434444443322 246778988888865422111 22334444333333
Q ss_pred ecccCChhHHHHHhhCCCCCCceEEEEeCC
Q 015165 226 GGSIRASEGFKMSNSLKASRYPFCAVVMPA 255 (412)
Q Consensus 226 ~~dv~~~Eg~~va~~l~~~~~P~l~lI~~~ 255 (412)
+. +.+. ...+++.|+++.||.++++.+.
T Consensus 188 ~~-~~~~-~~~l~~~f~v~~~Pslvl~~~~ 215 (244)
T 3q6o_A 188 RR-VLNT-EANVVRKFGVTDFPSCYLLFRN 215 (244)
T ss_dssp EE-EETT-CHHHHHHHTCCCSSEEEEEETT
T ss_pred EE-EeCc-hHHHHHHcCCCCCCeEEEEeCC
Confidence 32 2222 2467889999999999999874
No 307
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=34.25 E-value=54 Score=23.39 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=28.8
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCC-hhHHHHHhhCCCCCCceE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRA-SEGFKMSNSLKASRYPFC 249 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~-~Eg~~va~~l~~~~~P~l 249 (412)
+++++.++|..|... ..+|++ ++-+...|++. ++.......+++.++|.+
T Consensus 3 v~~f~~~~C~~C~~~----------~~~l~~~~i~~~~vdi~~~~~~~~~~~~~g~~~vP~~ 54 (81)
T 1h75_A 3 ITIYTRNDCVQCHAT----------KRAMENRGFDFEMINVDRVPEAAEALRAQGFRQLPVV 54 (81)
T ss_dssp EEEEECTTCHHHHHH----------HHHHHHTTCCCEEEETTTCHHHHHHHHHTTCCSSCEE
T ss_pred EEEEcCCCChhHHHH----------HHHHHHCCCCeEEEECCCCHHHHHHHHHhCCCccCEE
Confidence 345566777766643 334443 33333456653 444444445899999987
No 308
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=33.00 E-value=1.1e+02 Score=23.97 Aligned_cols=21 Identities=0% Similarity=-0.110 Sum_probs=16.9
Q ss_pred cCC-CHHHHHHHHHHHHHhhhH
Q 015165 268 GPK-SPEEMLMILQKVIEESNP 288 (412)
Q Consensus 268 G~~-s~~~ll~~L~~~ie~~~~ 288 (412)
-+. ++++|...|..++.++.+
T Consensus 110 Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 110 KSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHh
Confidence 366 899999999999887654
No 309
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=32.78 E-value=1.6e+02 Score=22.37 Aligned_cols=72 Identities=15% Similarity=0.036 Sum_probs=41.0
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhcC-eEEEecccC-ChhHHHHHhh--CCCCCCceEEEEeCCCCccceeeee
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNEN-FVSWGGSIR-ASEGFKMSNS--LKASRYPFCAVVMPAANQRIALLQQ 265 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~n-fV~w~~dv~-~~Eg~~va~~--l~~~~~P~l~lI~~~~~~~~~vl~r 265 (412)
.||- .++|+.|. .+.++|+++ +-+=-.||+ ++++.+.... -+..+.|.+.+-++ +++
T Consensus 7 ~vYs-~~~Cp~C~----------~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg------~~l-- 67 (92)
T 2lqo_A 7 TIYT-TSWCGYCL----------RLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADG------STL-- 67 (92)
T ss_dssp EEEE-CTTCSSHH----------HHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTS------CEE--
T ss_pred EEEc-CCCCHhHH----------HHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCC------EEE--
Confidence 3444 46777766 455677763 222234554 5666654433 36789998765333 222
Q ss_pred eecCCCHHHHHHHHHHH
Q 015165 266 VEGPKSPEEMLMILQKV 282 (412)
Q Consensus 266 i~G~~s~~~ll~~L~~~ 282 (412)
+..+++++...|.+.
T Consensus 68 --~~~~~~el~~~L~el 82 (92)
T 2lqo_A 68 --TNPSADEVKAKLVKI 82 (92)
T ss_dssp --ESCCHHHHHHHHHHH
T ss_pred --eCCCHHHHHHHHHHh
Confidence 235777877777654
No 310
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=32.53 E-value=1.7e+02 Score=22.59 Aligned_cols=69 Identities=13% Similarity=0.185 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCcEEEEEEeC-CCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccC-ChhHH-HHHhhCCCCCCce
Q 015165 175 FMDALQRSRSVFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIR-ASEGF-KMSNSLKASRYPF 248 (412)
Q Consensus 175 ~~eAl~~Ak~e~K~LlVyLh~-~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~-~~Eg~-~va~~l~~~~~P~ 248 (412)
..+.++..-+..+ ++||--+ +.++.|. ||+ .+.++|++ .|... ||. +++.. .+....+..++|.
T Consensus 7 ~~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp-~C~------~ak~~L~~~gi~~~~~--dI~~~~~~~~~l~~~~g~~tvP~ 76 (109)
T 3ipz_A 7 LKDTLEKLVNSEK-VVLFMKGTRDFPMCG-FSN------TVVQILKNLNVPFEDV--NILENEMLRQGLKEYSNWPTFPQ 76 (109)
T ss_dssp HHHHHHHHHTSSS-EEEEESBCSSSBSSH-HHH------HHHHHHHHTTCCCEEE--EGGGCHHHHHHHHHHHTCSSSCE
T ss_pred HHHHHHHHHccCC-EEEEEecCCCCCCCh-hHH------HHHHHHHHcCCCcEEE--ECCCCHHHHHHHHHHHCCCCCCe
Confidence 4556666666676 4556554 5555666 673 56777776 34444 443 33333 3444457889996
Q ss_pred EEEEeC
Q 015165 249 CAVVMP 254 (412)
Q Consensus 249 l~lI~~ 254 (412)
+. |.+
T Consensus 77 if-i~g 81 (109)
T 3ipz_A 77 LY-IGG 81 (109)
T ss_dssp EE-ETT
T ss_pred EE-ECC
Confidence 64 443
No 311
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=31.35 E-value=1.2e+02 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=13.6
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 015165 268 GPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 268 G~~s~~~ll~~L~~~ie~ 285 (412)
-+.++++|...|..++..
T Consensus 104 kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 104 KPFAADRLVQSARRAEEK 121 (155)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 367888888888877654
No 312
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=30.84 E-value=1.4e+02 Score=23.92 Aligned_cols=70 Identities=16% Similarity=0.171 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHhcCcEEEEEEeC-CCCCChhHHHhhcCCChHHHHHHhcCeE--EEecccCC-hhHHH-HHhhCCCCCCc
Q 015165 173 EGFMDALQRSRSVFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNENFV--SWGGSIRA-SEGFK-MSNSLKASRYP 247 (412)
Q Consensus 173 gs~~eAl~~Ak~e~K~LlVyLh~-~~~~~s~~F~r~vL~~~~v~~~l~~nfV--~w~~dv~~-~Eg~~-va~~l~~~~~P 247 (412)
|...+.++..-++.+ ++||--+ +.++.|. || ..+.++|++.-| +=-.||.. ++... +....+..++|
T Consensus 7 ~~~~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp-~C------~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~~tvP 78 (118)
T 2wem_A 7 GGSAEQLDALVKKDK-VVVFLKGTPEQPQCG-FS------NAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIP 78 (118)
T ss_dssp --CHHHHHHHHHHSS-EEEEESBCSSSBSSH-HH------HHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTCCSSC
T ss_pred ccHHHHHHHHhccCC-EEEEEecCCCCCccH-HH------HHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCCCCcC
Confidence 345566666666776 4455553 5556676 67 356777776222 22345543 34333 33334788999
Q ss_pred eEE
Q 015165 248 FCA 250 (412)
Q Consensus 248 ~l~ 250 (412)
.+.
T Consensus 79 ~vf 81 (118)
T 2wem_A 79 QVY 81 (118)
T ss_dssp EEE
T ss_pred eEE
Confidence 874
No 313
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=29.93 E-value=75 Score=25.17 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=39.2
Q ss_pred CccCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc-C---eEEEecccCCh-h---H-HHHHhh
Q 015165 170 FVSEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-N---FVSWGGSIRAS-E---G-FKMSNS 240 (412)
Q Consensus 170 F~~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-n---fV~w~~dv~~~-E---g-~~va~~ 240 (412)
.......+.++..-+..+ ++++..++|+.|... +..+|++ + +-+...|++.. + . -.++..
T Consensus 9 ~~~~~~~~~~~~~i~~~~--Vvvf~~~~Cp~C~~a---------lk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~ 77 (118)
T 3c1r_A 9 MVSQETIKHVKDLIAENE--IFVASKTYCPYCHAA---------LNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEI 77 (118)
T ss_dssp CSCHHHHHHHHHHHHHSS--EEEEECSSCHHHHHH---------HHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHccCc--EEEEEcCCCcCHHHH---------HHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHH
Confidence 344455556666655555 333455777766654 2444443 2 33344455432 2 2 246677
Q ss_pred CCCCCCceEEEEe
Q 015165 241 LKASRYPFCAVVM 253 (412)
Q Consensus 241 l~~~~~P~l~lI~ 253 (412)
++..++|.+ ++.
T Consensus 78 ~g~~tvP~v-fi~ 89 (118)
T 3c1r_A 78 NGQRTVPNI-YIN 89 (118)
T ss_dssp HSCCSSCEE-EET
T ss_pred hCCCCcCEE-EEC
Confidence 899999986 344
No 314
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=29.37 E-value=1.9e+02 Score=22.19 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=16.4
Q ss_pred eecCCCHHHHHHHHHHHHHhhh
Q 015165 266 VEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 266 i~G~~s~~~ll~~L~~~ie~~~ 287 (412)
+.-+.++++|...|..++.++.
T Consensus 108 l~kp~~~~~l~~~i~~~~~~~~ 129 (142)
T 3cg4_A 108 ITKPFDNEDLIEKTTFFMGFVR 129 (142)
T ss_dssp EESSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHHh
Confidence 4446789999999988876543
No 315
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=29.09 E-value=1.3e+02 Score=22.59 Aligned_cols=51 Identities=12% Similarity=0.015 Sum_probs=29.4
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc---C---eEEEecccCC--hhHH-HHHhhCCCCCCceEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---N---FVSWGGSIRA--SEGF-KMSNSLKASRYPFCA 250 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---n---fV~w~~dv~~--~Eg~-~va~~l~~~~~P~l~ 250 (412)
++++..++|..|.... .+|++ . |.+.-.|... ++.. .++..++..++|.+.
T Consensus 14 v~~f~~~~C~~C~~~~----------~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~ 73 (105)
T 1kte_A 14 VVVFIKPTCPFCRKTQ----------ELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73 (105)
T ss_dssp EEEEECSSCHHHHHHH----------HHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred EEEEEcCCCHhHHHHH----------HHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEE
Confidence 3445567777766433 33332 3 6665444432 2322 467778999999973
No 316
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=28.97 E-value=34 Score=30.51 Aligned_cols=74 Identities=8% Similarity=0.041 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccCChhHHHHHhhCCCCCCceEEE
Q 015165 172 SEGFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIRASEGFKMSNSLKASRYPFCAV 251 (412)
Q Consensus 172 ~gs~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~~~Eg~~va~~l~~~~~P~l~l 251 (412)
-+++.+.++.+|+.+|.++| |-+ ++..+=.++.-++||.+++=..|.--+..-....++.++..+.|-+++
T Consensus 40 i~~l~~~v~~lk~~~K~v~V--h~D-------li~Gls~d~~ai~fL~~~~~pdGIIsTk~~~i~~Ak~~gL~tIqR~Fl 110 (192)
T 3kts_A 40 VAQLKALVKYAQAGGKKVLL--HAD-------LVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLAIQRLFM 110 (192)
T ss_dssp TTTHHHHHHHHHHTTCEEEE--EGG-------GEETCCCSHHHHHHHHHTTCCSEEEESCHHHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEE--ecC-------chhccCCcHHHHHHHHhCCCCCEEEeCcHHHHHHHHHCCCeEEEEEEE
Confidence 37899999999999995555 643 455665677888999875545555556777888899999999999888
Q ss_pred EeC
Q 015165 252 VMP 254 (412)
Q Consensus 252 I~~ 254 (412)
|+.
T Consensus 111 iDS 113 (192)
T 3kts_A 111 IDS 113 (192)
T ss_dssp CSH
T ss_pred EEc
Confidence 873
No 317
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=28.56 E-value=77 Score=27.35 Aligned_cols=42 Identities=5% Similarity=-0.094 Sum_probs=20.9
Q ss_pred CcEEEEE-EeCCCCCChhH-HHhhcCCChHHHHH----HhcCeE-EEecccCChh
Q 015165 186 FKLLFVY-LHSPDHPDTPA-FCEGTLCNEVLAAF----VNENFV-SWGGSIRASE 233 (412)
Q Consensus 186 ~K~LlVy-Lh~~~~~~s~~-F~r~vL~~~~v~~~----l~~nfV-~w~~dv~~~E 233 (412)
+|+++|+ +-+.+|+.|.. =. +.+.++ =+.++. +++.++++++
T Consensus 56 Gk~vvL~f~~a~wcp~C~~~e~------p~l~~~~~~~~~~gv~~vv~Is~d~~~ 104 (184)
T 3uma_A 56 GKRVVLFAVPGAFTPTCSLNHL------PGYLENRDAILARGVDDIAVVAVNDLH 104 (184)
T ss_dssp TSEEEEEEESCTTCHHHHHTHH------HHHHHTHHHHHTTTCCEEEEEESSCHH
T ss_pred CCCEEEEEEcCCCCCCcCHHHH------HHHHHHHHHHHHcCCCEEEEEECCCHH
Confidence 4544444 44666766654 11 122222 223566 6777766654
No 318
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=28.54 E-value=2e+02 Score=22.00 Aligned_cols=65 Identities=6% Similarity=0.036 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCChhHH---H-HHhhCCCCCC
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRASEGF---K-MSNSLKASRY 246 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~~Eg~---~-va~~l~~~~~ 246 (412)
.+.+.++...+..+ +.|| ..++|+.|. .+..+|++ .|...-.|...+++. . +...++..++
T Consensus 7 ~~~~~~~~~i~~~~-v~vy-~~~~Cp~C~----------~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tv 74 (113)
T 3rhb_A 7 RMEESIRKTVTENT-VVIY-SKTWCSYCT----------EVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTV 74 (113)
T ss_dssp HHHHHHHHHHHHSS-EEEE-ECTTCHHHH----------HHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHhcCC-EEEE-ECCCChhHH----------HHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCc
Confidence 45566666666666 4444 446666555 34455554 455555554322322 2 4445688999
Q ss_pred ceEE
Q 015165 247 PFCA 250 (412)
Q Consensus 247 P~l~ 250 (412)
|.+.
T Consensus 75 P~if 78 (113)
T 3rhb_A 75 PNVF 78 (113)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 9984
No 319
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=27.80 E-value=1.5e+02 Score=24.56 Aligned_cols=68 Identities=10% Similarity=-0.002 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEEEecccC-ChhHH--HHHhhCCCCCCceEE
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVSWGGSIR-ASEGF--KMSNSLKASRYPFCA 250 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv~-~~Eg~--~va~~l~~~~~P~l~ 250 (412)
+..+.++.+.+..+ ++| +..++|..|..... +.+-++-.|..+-.|.. +...+ .++..+++.++|.+.
T Consensus 37 ~~~~~~~~~i~~~~-Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~if 107 (146)
T 2ht9_A 37 APVNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIF 107 (146)
T ss_dssp CCHHHHHHHHHHCS-EEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEE
T ss_pred HHHHHHHHHhcCCC-EEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEE
Confidence 44455555555555 334 45677777765431 22222335655555544 11222 367788999999874
No 320
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.07 E-value=4.5e+02 Score=25.68 Aligned_cols=54 Identities=22% Similarity=0.165 Sum_probs=33.2
Q ss_pred eecCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015165 266 VEGPKSPEEMLMILQKVIEESNPALLQARLDAEERRNNMRLREEQDAAYRAALEADQA 323 (412)
Q Consensus 266 i~G~~s~~~ll~~L~~~ie~~~~~L~~~r~er~er~~~R~lreeQD~aY~~SL~~D~e 323 (412)
+.|..++++.+..+...+++ .|...+++.+.+ ..+.+-++|=.+||.++..-+.
T Consensus 365 l~G~~t~eeal~~~~~~i~~---~l~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 365 ASGRQTVDEALKDAQTRITA---ARDGLRAVMEAR-NVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp HHSSSCHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHH---HHHhhHHHHHhh-hHHHHHHHHHHHHhhhHHHHHH
Confidence 35778888877777666644 344444444333 4456667777777877765543
No 321
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=26.91 E-value=71 Score=27.30 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=6.0
Q ss_pred CCceEEEEe
Q 015165 245 RYPFCAVVM 253 (412)
Q Consensus 245 ~~P~l~lI~ 253 (412)
..|..+||+
T Consensus 137 ~~r~tfvID 145 (173)
T 3mng_A 137 LKRFSMVVQ 145 (173)
T ss_dssp BCCEEEEEE
T ss_pred eEEEEEEEE
Confidence 347777776
No 322
>2q2f_A Selenoprotein S; anti-parallel coiled-coil, endoplasmic reticulum, membrane, selenocysteine, transmembrane, structural genomics; HET: MSE; 1.50A {Homo sapiens}
Probab=26.54 E-value=2.2e+02 Score=21.92 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 015165 315 RAALEADQARER 326 (412)
Q Consensus 315 ~~SL~~D~ek~~ 326 (412)
|++|++-|.|..
T Consensus 46 QEAl~aaRlRMQ 57 (89)
T 2q2f_A 46 QEALAAARLKMQ 57 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344555554443
No 323
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.15 E-value=1.7e+02 Score=22.72 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=15.2
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 015165 268 GPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 268 G~~s~~~ll~~L~~~ie~~~ 287 (412)
-+.++++|...|..++..+.
T Consensus 111 kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 111 KPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp SSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 36788999988888776654
No 324
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=26.05 E-value=1.5e+02 Score=25.65 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=9.2
Q ss_pred cCe-EEEecccCChhH
Q 015165 220 ENF-VSWGGSIRASEG 234 (412)
Q Consensus 220 ~nf-V~w~~dv~~~Eg 234 (412)
.++ .+++.+++++..
T Consensus 81 ~g~d~VigIS~D~~~~ 96 (176)
T 4f82_A 81 AGIDEIWCVSVNDAFV 96 (176)
T ss_dssp TTCCEEEEEESSCHHH
T ss_pred CCCCEEEEEeCCCHHH
Confidence 356 677777666543
No 325
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=25.70 E-value=1.6e+02 Score=25.18 Aligned_cols=47 Identities=15% Similarity=0.176 Sum_probs=33.8
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCccceeeeeeecCCCHHHHHHHHHHHHHhh
Q 015165 235 FKMSNSLKASRYPFCAVVMPAANQRIALLQQVEGPKSPEEMLMILQKVIEES 286 (412)
Q Consensus 235 ~~va~~l~~~~~P~l~lI~~~~~~~~~vl~ri~G~~s~~~ll~~L~~~ie~~ 286 (412)
.+.+..+++...|++.+... + ..+..+.|..+++.|...|..++.++
T Consensus 166 ~~~a~~~gv~g~Pt~~i~~~--G---~~~~~~~G~~~~~~l~~~l~~~~~~~ 212 (216)
T 2in3_A 166 FQRVAQWGISGFPALVVESG--T---DRYLITTGYRPIEALRQLLDTWLQQH 212 (216)
T ss_dssp HHHHHHTTCCSSSEEEEEET--T---EEEEEESSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCcccceEEEEEC--C---EEEEeccCCCCHHHHHHHHHHHHHhc
Confidence 35678899999999877542 2 12224568999999988888777653
No 326
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.55 E-value=5.2e+02 Score=25.93 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=0.0
Q ss_pred CCCCceeEe
Q 015165 384 KGPNVTQVI 392 (412)
Q Consensus 384 ~~~~~~~v~ 392 (412)
..+++-+|.
T Consensus 583 ~~~~~~~~~ 591 (597)
T 3oja_B 583 RNPDTRRVS 591 (597)
T ss_dssp ---------
T ss_pred CCCcccccc
Confidence 345554443
No 327
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=25.32 E-value=89 Score=26.04 Aligned_cols=86 Identities=16% Similarity=0.177 Sum_probs=53.9
Q ss_pred cEEEEEEeCCC---CCChhHHHhhcCCChHHHHHHhcCeEEEeccc---------CChhHHHHHhhCCCCCCceEEEEeC
Q 015165 187 KLLFVYLHSPD---HPDTPAFCEGTLCNEVLAAFVNENFVSWGGSI---------RASEGFKMSNSLKASRYPFCAVVMP 254 (412)
Q Consensus 187 K~LlVyLh~~~---~~~s~~F~r~vL~~~~v~~~l~~nfV~w~~dv---------~~~Eg~~va~~l~~~~~P~l~lI~~ 254 (412)
+.=++|++-|- |.++..-...+||..+=..++.. ++..+.. .-.+...+++.++++.+|++++ .
T Consensus 41 ~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~--~~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~ 116 (147)
T 3gv1_A 41 DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTD--WMRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--P 116 (147)
T ss_dssp SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHH--HHHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--T
T ss_pred ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHH--HHhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--E
Confidence 45566666664 67777788888887544444332 0001111 1124567889999999999886 2
Q ss_pred CCCccceeeeeeecCCCHHHHHHHHHHHH
Q 015165 255 AANQRIALLQQVEGPKSPEEMLMILQKVI 283 (412)
Q Consensus 255 ~~~~~~~vl~ri~G~~s~~~ll~~L~~~i 283 (412)
.+ . .+.|..+++.|.+.|..+.
T Consensus 117 -nG-~-----~i~G~~~~~~l~~~i~~~~ 138 (147)
T 3gv1_A 117 -NG-R-----TQSGYSPMPQLEEIIRKNQ 138 (147)
T ss_dssp -TS-C-----EEESCCCTTHHHHHHHHTS
T ss_pred -CC-E-----EeeCCCCHHHHHHHHHHHH
Confidence 12 1 2569989888887776544
No 328
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=24.36 E-value=4.3e+02 Score=24.94 Aligned_cols=94 Identities=17% Similarity=0.127 Sum_probs=49.5
Q ss_pred cEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhc--CeEEEecccCChh-HHHH-HhhCCCC-CCceEEEEeCCCCccce
Q 015165 187 KLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE--NFVSWGGSIRASE-GFKM-SNSLKAS-RYPFCAVVMPAANQRIA 261 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~--nfV~w~~dv~~~E-g~~v-a~~l~~~-~~P~l~lI~~~~~~~~~ 261 (412)
+.++|++.++++..+..+... | ..+.+-... .+.|-..|...-. .... ...|++. .+|.++++....+. .
T Consensus 248 ~~~~~~f~~~~~~~~~~~~~~-l--~~vA~~~~~~~ki~F~~id~~~~~~~l~~~~~~fgl~~~~P~~~i~~~~~~~--~ 322 (367)
T 3us3_A 248 GIHIVAFAEEADPDGYEFLEI-L--KSVAQDNTDNPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDAD--S 322 (367)
T ss_dssp TEEEEEECCTTSHHHHHHHHH-H--HHHHHHTTTCTTCCEEEECGGGCTTTHHHHHHHHTCCTTSCEEEEEETTTCC--E
T ss_pred CcEEEEEEcCCChhHHHHHHH-H--HHHHHHcCCCCceEEEEECCccchhHHHHHHHhcCCCCCCCeEEEEeccccc--c
Confidence 455666665554445666643 2 234443333 3544444544321 1112 3456665 89999999875431 1
Q ss_pred eeeeee---cCCCHHHHHHHHHHHHHh
Q 015165 262 LLQQVE---GPKSPEEMLMILQKVIEE 285 (412)
Q Consensus 262 vl~ri~---G~~s~~~ll~~L~~~ie~ 285 (412)
...... +..|++.+..-+..+++-
T Consensus 323 ~~y~~~~~~~~~t~~~i~~F~~~~~~G 349 (367)
T 3us3_A 323 VWMEMDDEEDLPSAEELEDWLEDVLEG 349 (367)
T ss_dssp EECCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred eeecCCcccccCCHHHHHHHHHHHHcC
Confidence 222233 357888777777666543
No 329
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=24.30 E-value=2e+02 Score=20.78 Aligned_cols=51 Identities=10% Similarity=0.091 Sum_probs=30.0
Q ss_pred EEEEeCCCCCChhHHHhhcCCChHHHHHHhc-CeEEEecccCChhHHHHHhhC-CCCCCceEE
Q 015165 190 FVYLHSPDHPDTPAFCEGTLCNEVLAAFVNE-NFVSWGGSIRASEGFKMSNSL-KASRYPFCA 250 (412)
Q Consensus 190 lVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~-nfV~w~~dv~~~Eg~~va~~l-~~~~~P~l~ 250 (412)
+++++.++|..|... ..+|++ ++-+-..|++....-.+...+ +..++|.+.
T Consensus 8 v~~y~~~~C~~C~~~----------~~~L~~~~i~~~~vdv~~~~~~~l~~~~~~~~~vP~l~ 60 (89)
T 2klx_A 8 IILYTRPNCPYCKRA----------RDLLDKKGVKYTDIDASTSLRQEMVQRANGRNTFPQIF 60 (89)
T ss_dssp EEEESCSCCTTTHHH----------HHHHHHHTCCEEEECSCHHHHHHHHHHHHSSCCSCEEE
T ss_pred EEEEECCCChhHHHH----------HHHHHHcCCCcEEEECCHHHHHHHHHHhCCCCCcCEEE
Confidence 455667888888753 334443 222334555522233466677 899999874
No 330
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=24.29 E-value=1.7e+02 Score=20.52 Aligned_cols=48 Identities=13% Similarity=0.090 Sum_probs=26.9
Q ss_pred EEEeCCCCCChhHHHhhcCCChHHHHHHhc---CeEEEecccCC-hhH-HHHHhhCCCCCCceEE
Q 015165 191 VYLHSPDHPDTPAFCEGTLCNEVLAAFVNE---NFVSWGGSIRA-SEG-FKMSNSLKASRYPFCA 250 (412)
Q Consensus 191 VyLh~~~~~~s~~F~r~vL~~~~v~~~l~~---nfV~w~~dv~~-~Eg-~~va~~l~~~~~P~l~ 250 (412)
++++.++|..|.. +..+|++ .|... |+.. ++. -.+...++..++|.+.
T Consensus 4 ~~y~~~~C~~C~~----------~~~~l~~~~i~~~~~--~i~~~~~~~~~~~~~~~~~~vP~l~ 56 (82)
T 1fov_A 4 EIYTKETCPYCHR----------AKALLSSKGVSFQEL--PIDGNAAKREEMIKRSGRTTVPQIF 56 (82)
T ss_dssp EEEECSSCHHHHH----------HHHHHHHHTCCCEEE--ECTTCSHHHHHHHHHHSSCCSCEEE
T ss_pred EEEECCCChhHHH----------HHHHHHHCCCCcEEE--ECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 3445667766553 3344443 44444 4443 232 3456677899999874
No 331
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=24.04 E-value=1.8e+02 Score=24.31 Aligned_cols=59 Identities=8% Similarity=-0.026 Sum_probs=31.9
Q ss_pred cEEEEEEeCCCCCChhHH-HhhcCCChHHHHHHhcCeE-EEecccCChhHH-HHHhhCCCC-CCc
Q 015165 187 KLLFVYLHSPDHPDTPAF-CEGTLCNEVLAAFVNENFV-SWGGSIRASEGF-KMSNSLKAS-RYP 247 (412)
Q Consensus 187 K~LlVyLh~~~~~~s~~F-~r~vL~~~~v~~~l~~nfV-~w~~dv~~~Eg~-~va~~l~~~-~~P 247 (412)
+.+|+++-..+|..|..= ...+- +...+|-+.++. +++.++++++.. ..+..++.+ .||
T Consensus 45 ~vvl~~~~a~wcp~C~~eh~p~l~--~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~~~~~~~fp 107 (171)
T 2pwj_A 45 KVVIFGLPGAYTGVCSSKHVPPYK--HNIDKFKAKGVDSVICVAINDPYTVNAWAEKIQAKDAIE 107 (171)
T ss_dssp EEEEEECSCTTCTTHHHHTHHHHH--HTHHHHHHTTCSEEEEEESSCHHHHHHHHHHTTCTTTSE
T ss_pred CEEEEEecCCCCCCCCHHHHHHHH--HHHHHHHHCCCCEEEEEeCCCHHHHHHHHHHhCCCCceE
Confidence 466667777888888752 21110 111223334677 888877765532 334555552 455
No 332
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.13 E-value=2e+02 Score=22.13 Aligned_cols=20 Identities=15% Similarity=0.385 Sum_probs=16.2
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 015165 268 GPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 268 G~~s~~~ll~~L~~~ie~~~ 287 (412)
-+.++++|...|..++.++.
T Consensus 110 kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 110 KPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp SSCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 36788999999998887764
No 333
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=22.84 E-value=2.1e+02 Score=21.91 Aligned_cols=20 Identities=10% Similarity=0.227 Sum_probs=15.8
Q ss_pred cCCCHHHHHHHHHHHHHhhh
Q 015165 268 GPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 268 G~~s~~~ll~~L~~~ie~~~ 287 (412)
-+.++++|...|..++..+.
T Consensus 113 kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 113 KPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 36788999999988887654
No 334
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=22.78 E-value=38 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=22.4
Q ss_pred CHHHHHHHHHhcCcEEEEEEeCCCCCChhHH
Q 015165 174 GFMDALQRSRSVFKLLFVYLHSPDHPDTPAF 204 (412)
Q Consensus 174 s~~eAl~~Ak~e~K~LlVyLh~~~~~~s~~F 204 (412)
...+.++..|..+|+|+||+.+....+.+.|
T Consensus 39 dirdiiksmkdngkplvvfvngasqndvnef 69 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKPLVVFVNGASQNDVNEF 69 (112)
T ss_dssp HHHHHHHHHTTCCSCEEEEECSCCHHHHHHH
T ss_pred hHHHHHHHHHhcCCeEEEEecCcccccHHHH
Confidence 4667777788999999999987544344433
No 335
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=21.99 E-value=42 Score=28.06 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=45.3
Q ss_pred hHHHHHHhcCeEEEeccc---CChhHHHHHhhCCCCCCceEEEEeCCC--Cccceeee-----eeecCCCHHHHHHHHHH
Q 015165 212 EVLAAFVNENFVSWGGSI---RASEGFKMSNSLKASRYPFCAVVMPAA--NQRIALLQ-----QVEGPKSPEEMLMILQK 281 (412)
Q Consensus 212 ~~v~~~l~~nfV~w~~dv---~~~Eg~~va~~l~~~~~P~l~lI~~~~--~~~~~vl~-----ri~G~~s~~~ll~~L~~ 281 (412)
.+|.+-|.+.-|---.|. .+.-|+.+-+. ....+|+++||+... +..++|-. +-.|.++.++|+..|..
T Consensus 25 ~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a-~~~kvPy~lVVG~kE~e~~sVsVR~r~~~~~e~~~m~lde~i~~l~~ 103 (130)
T 1v95_A 25 ESVGRKVRDLGMVVDLIFLNTEVSLSQALEDV-SRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVAR 103 (130)
T ss_dssp HHHHHHHHTTTCCEEEEECTTSSCHHHHHHHH-HHHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEecCCCCCcHHHHHHHH-HHcCCCEEEEEechHHhcCeeEEEecCCCCCccCccCHHHHHHHHHH
Confidence 355555555322222343 35567776442 246899999998531 11244432 23467899999999988
Q ss_pred HHHhhhH
Q 015165 282 VIEESNP 288 (412)
Q Consensus 282 ~ie~~~~ 288 (412)
.+..|..
T Consensus 104 ~~~~~~~ 110 (130)
T 1v95_A 104 NYERYKN 110 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877654
No 336
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=21.94 E-value=3e+02 Score=21.79 Aligned_cols=67 Identities=10% Similarity=0.130 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCcEEEEEEeC-CCCCChhHHHhhcCCChHHHHHHhcCeE----EEecccCCh-hHHH-HHhhCCCCCCce
Q 015165 176 MDALQRSRSVFKLLFVYLHS-PDHPDTPAFCEGTLCNEVLAAFVNENFV----SWGGSIRAS-EGFK-MSNSLKASRYPF 248 (412)
Q Consensus 176 ~eAl~~Ak~e~K~LlVyLh~-~~~~~s~~F~r~vL~~~~v~~~l~~nfV----~w~~dv~~~-Eg~~-va~~l~~~~~P~ 248 (412)
.+.++..-+..+ ++||--+ +.++.|. ||+ .+.++|++.-| +=-.|+.+. +... +....+..++|.
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp-~C~------~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~ 77 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCG-FSR------ATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQ 77 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTT-HHH------HHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCE
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCc-cHH------HHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCe
Confidence 344555556666 4556554 3444555 663 45667765211 223445433 3322 334457889998
Q ss_pred EE
Q 015165 249 CA 250 (412)
Q Consensus 249 l~ 250 (412)
+.
T Consensus 78 vf 79 (121)
T 3gx8_A 78 LY 79 (121)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 337
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=21.28 E-value=2.7e+02 Score=21.01 Aligned_cols=67 Identities=10% Similarity=0.199 Sum_probs=34.3
Q ss_pred CeEEEecccCChhHHHHHhhCCC----CCCceEEEEeCCCCc-----cceeeeeeecCCCHHHHHHHHHHHHHhhh
Q 015165 221 NFVSWGGSIRASEGFKMSNSLKA----SRYPFCAVVMPAANQ-----RIALLQQVEGPKSPEEMLMILQKVIEESN 287 (412)
Q Consensus 221 nfV~w~~dv~~~Eg~~va~~l~~----~~~P~l~lI~~~~~~-----~~~vl~ri~G~~s~~~ll~~L~~~ie~~~ 287 (412)
++|+.-.++.+.+|+.+...++. ...|.+++....... ...+..-+.-+.++++|+..|..++....
T Consensus 49 dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 49 DVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp SEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 34555555555556655544332 245554444321110 00111122336789999999998887654
No 338
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.98 E-value=2.6e+02 Score=21.42 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 015165 269 PKSPEEMLMILQKVIEES 286 (412)
Q Consensus 269 ~~s~~~ll~~L~~~ie~~ 286 (412)
+.++++|...|..++..+
T Consensus 122 P~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 122 PLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 668889988888877654
No 339
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=20.88 E-value=92 Score=29.54 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhhhC------CCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 3 DVADKLAYFQAITG------LEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 3 ~~~~~l~~f~~iT~------~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
++.++|.+|.+... ..|+.....+|.+.+||++.|...+
T Consensus 38 ~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL 82 (320)
T 3q8g_A 38 EQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMF 82 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 36678888887742 2444678999999999999999886
No 340
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=20.52 E-value=1.3e+02 Score=22.88 Aligned_cols=55 Identities=9% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHH---hcCcEEEEEEeCCCCCChhHHHhhcC
Q 015165 151 EAMEFVAVFERDYGNVKPNFVSEGFMDALQRSR---SVFKLLFVYLHSPDHPDTPAFCEGTL 209 (412)
Q Consensus 151 ~~~~F~~~f~~~yg~~~p~F~~gs~~eAl~~Ak---~e~K~LlVyLh~~~~~~s~~F~r~vL 209 (412)
+-.+-+.+|-.+.|..- .- ..|+.+.+..++ +.++.++|| |+.|..++...++-|
T Consensus 14 TL~nLIeefv~RegtDy-g~-E~sL~~kv~qv~~qL~~GeavIvf--se~~Esv~I~~k~~~ 71 (78)
T 1y0n_A 14 TLNNLLEDFVTREGTDN-GD-ETPLDVRVERARHALRRGEAVILF--DPESQQCQLMLRSEV 71 (78)
T ss_dssp HHHHHHHHHHHCC---------CCHHHHHHHHHHHHHTTSEEEEE--CTTTCCEEEEEGGGS
T ss_pred HHHHHHHHHHhcccccc-cc-cccHHHHHHHHHHHHHcCCEEEEE--CCCCCeEeeeEHHHh
Confidence 44788999999988653 23 778999888876 677877777 778877765554433
No 341
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=20.44 E-value=97 Score=28.64 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=30.2
Q ss_pred cHHHHHHHHHhhhC------CCChHHHHHHHHhCCCCHHHHHhhh
Q 015165 3 DVADKLAYFQAITG------LEDPDLCTEILQAHDWDLELAISSF 41 (412)
Q Consensus 3 ~~~~~l~~f~~iT~------~~~~~~a~~~L~~~~W~le~Ai~~~ 41 (412)
++.++|.+|.+... -.|+.....+|.+.+||++.|...+
T Consensus 29 ~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l 73 (296)
T 1aua_A 29 AQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMF 73 (296)
T ss_dssp THHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHH
Confidence 36778888876543 2344679999999999999998875
No 342
>3dwa_A SUBB, subtilase cytotoxin, subunit B; HET: 1PE; 2.08A {Escherichia coli} PDB: 3dwp_A* 3dwq_A*
Probab=20.39 E-value=1.6e+02 Score=24.15 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=36.6
Q ss_pred ccCCHHHHHHHHH---hcCcEEEEEEeCCCCCChhHHHhhcCCChHHHHHHhcCeEE
Q 015165 171 VSEGFMDALQRSR---SVFKLLFVYLHSPDHPDTPAFCEGTLCNEVLAAFVNENFVS 224 (412)
Q Consensus 171 ~~gs~~eAl~~Ak---~e~K~LlVyLh~~~~~~s~~F~r~vL~~~~v~~~l~~nfV~ 224 (412)
+.-+|++-+++|+ ..++.+=||+.. +||+|+.|...+..|=|+
T Consensus 53 ~~~~Fd~~~~~A~YyYtTG~~vrvY~~~-----------nVWtdp~F~~~fS~NeLv 98 (126)
T 3dwa_A 53 WGASFSTLYNQALYFYTTGQPVRIYYEP-----------GVWTYPPFVKALTSNALV 98 (126)
T ss_dssp SGGGHHHHHHHHHHHHHHCCEEEEEEET-----------TCCCCHHHHHHSCSCEEE
T ss_pred ccccHHHHHHHhHhhhhcCCcEEEEEec-----------CcccChhHhhhhcccceE
Confidence 4468999999997 788999999996 899999999999887554
Done!