BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015167
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 312 PRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYI 350
P + I + VS+ HA R +G F ++D+ S +GTY+
Sbjct: 74 PESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV 112
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 312 PRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYI 350
P + I + VS+ HA R +G F ++D+ S +GTY+
Sbjct: 74 PESDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYV 112
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 278 VPSGSETVVSQ--PIYLSRSDENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDG 335
+PSGS +V + P SR ++P + S P + I + VS+ HA R + G
Sbjct: 7 LPSGSALLVVKRGPNAGSRFLLDQP----TTSAGRHPDSDIFLDDVTVSRRHAEFRLEGG 62
Query: 336 AFYLIDLRSEHGTYIT 351
F ++D+ S +GTY+
Sbjct: 63 EFQVVDVGSLNGTYVN 78
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 296 DENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGA--FYLIDLRSEHGTYITDN 353
DE + YL G I S++HA + Y +LIDL S HGT++
Sbjct: 52 DEKKYYLFGRNPD----LCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLG-- 105
Query: 354 EGRRYRVSPNFPARFRPSNSIQFGSDKKA 382
R+ P+ P + +++ FG+ +A
Sbjct: 106 ---HIRLEPHKPQQIPIDSTVSFGASTRA 131
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 312 PRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYI 350
P + I + VS+ HA R ++ F ++D+ S +GTY+
Sbjct: 83 PDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYV 121
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
Monooxygenase From Photorhabdus Luminescens Subsp.
Laumondii Tto1 (Target Psi-012791)
Length = 412
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 64 FTPAAEKGLPVTRV-ISRMTLQQILAHAVGNDIILNDSNV-IDFMDHGDKVSVMLENGQC 121
+P A K + R+ ISR L++IL + N I N + V + +++G + + +G
Sbjct: 94 ISPXAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGG-IKIFFADGSH 152
Query: 122 YAGDVLVGADGIWSKM 137
DVLVGADG SK+
Sbjct: 153 ENVDVLVGADGSNSKV 168
>pdb|3GMC|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
pdb|3GMC|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
With Substrate Bound
Length = 415
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+++R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 134 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 187
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 188 IVGADGVGSKV 198
>pdb|3ALL|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
pdb|3ALL|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270a
Length = 379
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+++R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 152 IVGADGVGSKV 162
>pdb|3ALK|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant Y270f
Length = 379
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+++R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 152 IVGADGVGSKV 162
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 312 PRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYIT 351
P + I + VS+ HA R ++ F ++D+ S +GTY+
Sbjct: 60 PDSDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVN 99
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALH|B Chain B, Higher Resolution And Native Structure Of
2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase
pdb|3ALI|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALI|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
5-Pyridoxic Acid Bound Form
pdb|3ALJ|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Reduced Form
Length = 379
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+++R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 152 IVGADGVGSKV 162
>pdb|3ALM|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
pdb|3ALM|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase,
Mutant C294a
Length = 379
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+++R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 98 GLP-WRIMTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 151
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 152 IVGADGVGSKV 162
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 32.7 bits (73), Expect = 0.42, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 22/115 (19%)
Query: 279 PSGSETVVSQPIYLSRSDENEPY-LIGSESQEDFPRTSIVIPSAQVSKMHAHIRYK---- 333
P ET+ I +RS + Y L G S D + + VS+ HA ++++
Sbjct: 20 PYSLETLKGGTILGTRSLKGTSYCLFGRLSGCD-----VCLEHPSVSRYHAVLQHRASGP 74
Query: 334 DG-------AFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSDKK 381
DG FYL DL S HGT++ + R+ P R + ++FG +
Sbjct: 75 DGECDSNGPGFYLYDLGSTHGTFLN-----KTRIPPRTYCRVHVGHVVRFGGSTR 124
>pdb|3GMB|A Chain A, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
pdb|3GMB|B Chain B, Crystal Structure Of
2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase
Length = 415
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 71 GLPVTRVISRMTLQQIL---AHAVGNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDV 126
GLP R+ +R L L A A+G DI +N V D V + L+ G+ D+
Sbjct: 134 GLP-WRIXTRSHLHDALVNRARALGVDISVNSEAVA-----ADPVGRLTLQTGEVLEADL 187
Query: 127 LVGADGIWSKM 137
+VGADG+ SK+
Sbjct: 188 IVGADGVGSKV 198
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 78 ISRMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137
+SR LQ+ + G D + V + D V+V +G +GD+L+ ADG S +
Sbjct: 124 VSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 78 ISRMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137
+SR LQ+ G D + V + D V+V +G +GD+L+ ADG S +
Sbjct: 124 VSRAELQREXLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSAL 183
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 78 ISRMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137
I+R L+ IL +++ ND ++ D ++ K ++ EN D+++ A+G SK+
Sbjct: 126 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 185
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 78 ISRMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137
I+R L+ IL +++ ND ++ D ++ K ++ EN D+++ A+G SK+
Sbjct: 105 INRNDLRAILLNSLENDTVIWDRKLVXLEPGKKKWTLTFENKPSETADLVILANGGXSKV 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,715,462
Number of Sequences: 62578
Number of extensions: 471127
Number of successful extensions: 997
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 21
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)