Query 015167
Match_columns 412
No_of_seqs 424 out of 2849
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 2.8E-48 6.1E-53 402.6 31.1 404 4-409 117-668 (668)
2 PRK06475 salicylate hydroxylas 99.7 1.1E-15 2.4E-20 153.4 20.9 129 7-140 37-172 (400)
3 PF00498 FHA: FHA domain; Int 99.7 1.4E-16 3E-21 118.8 8.8 67 301-377 1-68 (68)
4 PRK07588 hypothetical protein; 99.7 5E-15 1.1E-19 148.2 19.9 127 8-140 36-163 (391)
5 PRK07538 hypothetical protein; 99.6 1.9E-14 4.1E-19 145.2 22.5 127 7-140 35-170 (413)
6 PRK05868 hypothetical protein; 99.6 2.8E-14 6.1E-19 141.9 22.5 128 7-140 36-165 (372)
7 PRK06753 hypothetical protein; 99.6 1.8E-14 3.8E-19 143.2 20.6 123 7-140 35-157 (373)
8 TIGR03219 salicylate_mono sali 99.6 2E-14 4.3E-19 145.0 19.7 125 6-139 35-163 (414)
9 COG0654 UbiH 2-polyprenyl-6-me 99.6 1.3E-14 2.9E-19 145.0 16.9 126 7-140 38-167 (387)
10 PRK08163 salicylate hydroxylas 99.6 5.9E-14 1.3E-18 140.6 21.5 129 7-140 39-171 (396)
11 KOG2614 Kynurenine 3-monooxyge 99.6 3.2E-14 6.9E-19 137.4 13.1 257 3-312 36-302 (420)
12 PRK06617 2-octaprenyl-6-methox 99.5 2.1E-13 4.6E-18 135.7 16.3 121 9-140 42-165 (374)
13 PRK07236 hypothetical protein; 99.5 6.4E-13 1.4E-17 132.8 17.2 117 8-140 43-159 (386)
14 PRK08013 oxidoreductase; Provi 99.4 2.5E-12 5.5E-17 129.2 14.5 119 13-140 50-173 (400)
15 PRK06847 hypothetical protein; 99.4 9.6E-12 2.1E-16 123.7 18.5 126 8-139 40-167 (375)
16 TIGR01989 COQ6 Ubiquinone bios 99.4 2.6E-12 5.5E-17 130.6 14.3 122 11-140 55-188 (437)
17 PRK06183 mhpA 3-(3-hydroxyphen 99.4 6.1E-12 1.3E-16 131.2 14.9 127 8-140 46-179 (538)
18 PRK08850 2-octaprenyl-6-methox 99.4 6.8E-12 1.5E-16 126.2 14.2 122 12-140 49-173 (405)
19 PRK08849 2-octaprenyl-3-methyl 99.3 1.2E-11 2.6E-16 123.6 13.8 119 14-140 51-172 (384)
20 cd00060 FHA Forkhead associate 99.3 2.1E-11 4.5E-16 97.9 12.1 79 298-386 21-100 (102)
21 PRK05714 2-octaprenyl-3-methyl 99.3 1.6E-11 3.4E-16 123.5 13.9 121 13-140 51-173 (405)
22 TIGR03354 VI_FHA type VI secre 99.3 7.5E-12 1.6E-16 124.2 11.2 71 298-379 23-97 (396)
23 PRK07045 putative monooxygenas 99.3 2.3E-11 4.9E-16 121.7 14.0 122 10-139 43-169 (388)
24 PRK07364 2-octaprenyl-6-methox 99.3 7.4E-11 1.6E-15 119.0 15.0 123 10-140 58-186 (415)
25 PRK07333 2-octaprenyl-6-methox 99.3 5.6E-11 1.2E-15 119.3 14.0 124 10-140 43-172 (403)
26 PRK09126 hypothetical protein; 99.2 6.8E-11 1.5E-15 118.3 13.0 125 9-140 45-172 (392)
27 PRK06184 hypothetical protein; 99.2 2.1E-10 4.6E-15 118.7 15.4 127 8-140 39-173 (502)
28 COG1716 FOG: FHA domain [Signa 99.2 5.6E-11 1.2E-15 107.0 9.8 70 299-380 89-158 (191)
29 PRK08294 phenol 2-monooxygenas 99.2 1.6E-10 3.4E-15 122.4 14.7 128 7-140 68-215 (634)
30 PRK08243 4-hydroxybenzoate 3-m 99.2 1.8E-10 3.8E-15 115.5 13.8 121 9-140 42-168 (392)
31 TIGR01988 Ubi-OHases Ubiquinon 99.2 2.4E-10 5.2E-15 113.8 14.7 123 10-140 42-168 (385)
32 TIGR01984 UbiH 2-polyprenyl-6- 99.2 2.9E-10 6.2E-15 113.4 14.0 121 11-140 43-167 (382)
33 PRK06126 hypothetical protein; 99.2 3.2E-10 7E-15 118.5 14.7 131 7-140 42-193 (545)
34 PF01494 FAD_binding_3: FAD bi 99.2 2.5E-10 5.4E-15 111.7 12.9 128 7-140 36-177 (356)
35 KOG1882 Transcriptional regula 99.2 4E-11 8.6E-16 106.6 6.3 94 273-379 172-278 (293)
36 TIGR02360 pbenz_hydroxyl 4-hyd 99.2 4.3E-10 9.4E-15 112.6 14.2 121 9-140 42-168 (390)
37 PRK08773 2-octaprenyl-3-methyl 99.2 5E-10 1.1E-14 112.1 14.7 121 13-140 52-174 (392)
38 PRK08020 ubiF 2-octaprenyl-3-m 99.2 6.1E-10 1.3E-14 111.4 14.8 120 13-140 52-174 (391)
39 PRK08244 hypothetical protein; 99.1 6.2E-10 1.3E-14 114.9 14.4 122 8-140 38-164 (493)
40 COG3456 Predicted component of 99.1 1.5E-10 3.2E-15 111.7 9.0 80 297-390 24-106 (430)
41 PRK07190 hypothetical protein; 99.1 1.4E-09 3.1E-14 111.8 15.4 128 7-140 40-170 (487)
42 PRK08132 FAD-dependent oxidore 99.1 2.3E-09 5.1E-14 112.1 15.8 126 8-140 59-190 (547)
43 PRK05732 2-octaprenyl-6-methox 99.1 2.4E-09 5.2E-14 107.1 14.9 122 10-140 49-174 (395)
44 PRK07494 2-octaprenyl-6-methox 99.1 1.4E-09 2.9E-14 108.8 12.3 120 12-140 46-172 (388)
45 smart00240 FHA Forkhead associ 99.1 2.9E-10 6.3E-15 79.7 5.3 49 301-353 1-50 (52)
46 PRK06834 hypothetical protein; 99.0 4.2E-09 9.2E-14 108.4 13.7 116 12-140 44-161 (488)
47 PRK07608 ubiquinone biosynthes 99.0 1.1E-08 2.3E-13 102.2 16.0 118 14-140 52-172 (388)
48 PRK06185 hypothetical protein; 99.0 7.4E-09 1.6E-13 104.1 14.8 123 11-140 45-174 (407)
49 PRK06996 hypothetical protein; 99.0 5.9E-09 1.3E-13 104.7 13.2 115 12-138 57-178 (398)
50 PLN02985 squalene monooxygenas 98.9 8.3E-09 1.8E-13 106.7 13.1 125 8-140 79-213 (514)
51 PTZ00367 squalene epoxidase; P 98.9 2E-08 4.3E-13 104.7 13.0 117 11-140 73-224 (567)
52 PRK11445 putative oxidoreducta 98.7 9.5E-08 2.1E-12 94.4 12.7 114 12-140 44-163 (351)
53 KOG3855 Monooxygenase involved 98.7 5.6E-08 1.2E-12 94.1 9.3 119 14-140 91-222 (481)
54 PRK08255 salicylyl-CoA 5-hydro 98.7 2.7E-07 5.9E-12 100.1 13.8 106 8-139 38-145 (765)
55 KOG1881 Anion exchanger adapto 98.6 1.8E-08 4E-13 102.7 2.9 73 298-380 176-259 (793)
56 KOG1880 Nuclear inhibitor of p 98.4 2.5E-07 5.4E-12 85.3 4.1 75 297-380 36-112 (337)
57 TIGR02032 GG-red-SF geranylger 98.0 0.00011 2.3E-09 70.1 12.7 113 9-139 37-152 (295)
58 TIGR02023 BchP-ChlP geranylger 98.0 7.1E-05 1.5E-09 74.9 11.8 103 22-138 46-158 (388)
59 PLN00093 geranylgeranyl diphos 97.9 8.8E-05 1.9E-09 75.7 12.1 114 9-140 77-205 (450)
60 PRK10157 putative oxidoreducta 97.6 0.00021 4.6E-09 72.5 9.3 65 76-140 103-170 (428)
61 PLN02463 lycopene beta cyclase 97.6 0.00024 5.3E-09 72.3 8.8 61 76-137 109-171 (447)
62 PRK10015 oxidoreductase; Provi 97.5 0.00033 7.2E-09 71.1 8.6 65 76-140 103-170 (429)
63 TIGR02028 ChlP geranylgeranyl 97.5 0.0012 2.6E-08 66.4 11.8 64 76-140 88-166 (398)
64 KOG0615 Serine/threonine prote 97.3 0.00036 7.9E-09 68.1 6.0 81 298-389 63-158 (475)
65 COG0644 FixC Dehydrogenases (f 97.2 0.0016 3.4E-08 65.4 8.9 66 75-140 89-158 (396)
66 TIGR01789 lycopene_cycl lycope 97.1 0.002 4.3E-08 64.2 9.0 61 71-137 80-140 (370)
67 PLN02697 lycopene epsilon cycl 96.9 0.0026 5.6E-08 66.1 8.1 60 76-136 187-249 (529)
68 TIGR01790 carotene-cycl lycope 96.9 0.0039 8.5E-08 62.2 8.7 62 76-138 80-144 (388)
69 PF05834 Lycopene_cycl: Lycope 96.8 0.0047 1E-07 61.6 8.9 65 72-137 79-144 (374)
70 PF04820 Trp_halogenase: Trypt 96.7 0.018 4E-07 58.9 11.9 127 6-137 35-213 (454)
71 KOG1298 Squalene monooxygenase 96.6 0.0079 1.7E-07 58.6 7.6 117 15-140 88-214 (509)
72 KOG2293 Daxx-interacting prote 96.5 0.0096 2.1E-07 59.8 7.8 83 297-388 446-531 (547)
73 KOG0245 Kinesin-like protein [ 96.2 0.013 2.9E-07 63.0 7.5 80 298-389 476-557 (1221)
74 TIGR02500 type_III_yscD type I 95.9 0.04 8.6E-07 55.6 9.4 77 287-379 12-89 (410)
75 KOG1892 Actin filament-binding 95.3 0.042 9E-07 58.8 6.9 86 288-389 371-456 (1629)
76 PRK11728 hydroxyglutarate oxid 95.2 0.086 1.9E-06 52.8 8.7 61 76-137 144-206 (393)
77 PF01266 DAO: FAD dependent ox 95.1 0.07 1.5E-06 51.9 7.6 61 76-137 142-205 (358)
78 PRK04176 ribulose-1,5-biphosph 94.7 0.15 3.2E-06 48.1 8.3 65 76-140 99-179 (257)
79 PLN02568 polyamine oxidase 94.0 0.18 3.9E-06 52.8 7.9 55 76-130 235-291 (539)
80 TIGR01663 PNK-3'Pase polynucle 93.8 0.28 6E-06 50.9 8.8 85 298-395 31-118 (526)
81 PRK01747 mnmC bifunctional tRN 93.8 0.23 4.9E-06 53.5 8.5 60 77-136 404-464 (662)
82 TIGR00292 thiazole biosynthesi 93.4 0.43 9.4E-06 44.9 8.8 65 76-140 95-176 (254)
83 PRK05257 malate:quinone oxidor 93.2 0.32 6.9E-06 50.4 8.1 62 76-137 178-248 (494)
84 PRK11259 solA N-methyltryptoph 93.2 0.42 9.1E-06 47.2 8.7 58 78-136 146-205 (376)
85 TIGR01377 soxA_mon sarcosine o 93.0 0.45 9.8E-06 47.1 8.8 59 77-136 141-201 (380)
86 PF13738 Pyr_redox_3: Pyridine 93.0 0.33 7.3E-06 43.3 7.1 61 78-138 79-141 (203)
87 PRK04965 NADH:flavorubredoxin 92.9 0.41 8.9E-06 47.6 8.2 57 83-139 185-243 (377)
88 TIGR03197 MnmC_Cterm tRNA U-34 92.8 0.42 9E-06 47.6 8.0 61 77-137 131-192 (381)
89 COG2081 Predicted flavoprotein 92.4 0.45 9.8E-06 47.0 7.4 61 78-138 108-170 (408)
90 TIGR02352 thiamin_ThiO glycine 92.3 0.53 1.1E-05 45.6 8.0 60 77-137 133-195 (337)
91 TIGR00275 flavoprotein, HI0933 91.6 0.68 1.5E-05 46.6 8.0 55 80-135 104-160 (400)
92 PLN02676 polyamine oxidase 91.2 0.62 1.3E-05 48.2 7.4 55 80-134 223-285 (487)
93 PRK05249 soluble pyridine nucl 91.1 0.83 1.8E-05 46.7 8.2 57 82-138 217-275 (461)
94 COG0579 Predicted dehydrogenas 91.1 0.85 1.8E-05 46.1 7.9 62 76-137 148-213 (429)
95 PRK12409 D-amino acid dehydrog 91.0 0.89 1.9E-05 45.6 8.2 60 78-137 194-260 (410)
96 PF03486 HI0933_like: HI0933-l 90.8 0.76 1.6E-05 46.4 7.4 59 79-137 107-168 (409)
97 PF01593 Amino_oxidase: Flavin 90.6 0.61 1.3E-05 46.2 6.6 41 93-133 223-263 (450)
98 PRK11883 protoporphyrinogen ox 90.5 0.89 1.9E-05 46.1 7.8 53 81-133 221-273 (451)
99 PRK12416 protoporphyrinogen ox 90.2 0.9 1.9E-05 46.5 7.6 52 81-132 226-277 (463)
100 PRK13369 glycerol-3-phosphate 90.2 1.2 2.5E-05 46.3 8.4 61 77-137 151-217 (502)
101 PF00070 Pyr_redox: Pyridine n 89.3 0.88 1.9E-05 34.2 5.0 27 93-119 54-80 (80)
102 PRK15317 alkyl hydroperoxide r 89.2 1.3 2.9E-05 46.1 7.9 59 78-136 263-323 (517)
103 TIGR00562 proto_IX_ox protopor 89.2 1.1 2.4E-05 45.7 7.3 53 82-134 226-278 (462)
104 PRK05192 tRNA uridine 5-carbox 88.7 1.4 2.9E-05 46.7 7.4 60 77-137 96-159 (618)
105 PRK06116 glutathione reductase 88.3 1.7 3.7E-05 44.3 8.0 56 83-138 210-268 (450)
106 COG1231 Monoamine oxidase [Ami 88.2 1.4 3.1E-05 44.3 6.9 38 93-130 220-257 (450)
107 PRK00711 D-amino acid dehydrog 88.1 1.8 3.9E-05 43.4 7.9 58 78-136 198-258 (416)
108 PRK09754 phenylpropionate diox 88.0 2.1 4.6E-05 42.8 8.2 55 84-139 189-245 (396)
109 PRK13339 malate:quinone oxidor 88.0 1.9 4.1E-05 44.6 8.0 62 76-137 179-249 (497)
110 PRK12266 glpD glycerol-3-phosp 87.8 1.9 4.1E-05 44.8 8.0 60 78-137 152-218 (508)
111 PF01134 GIDA: Glucose inhibit 87.6 2.5 5.4E-05 42.2 8.2 58 76-134 90-151 (392)
112 PLN02268 probable polyamine ox 87.5 1.3 2.8E-05 44.9 6.4 39 93-131 210-248 (435)
113 PF13454 NAD_binding_9: FAD-NA 87.5 2.9 6.3E-05 35.9 7.8 57 77-133 90-155 (156)
114 PRK09231 fumarate reductase fl 86.8 2 4.3E-05 45.5 7.5 57 81-137 133-198 (582)
115 PRK07845 flavoprotein disulfid 85.6 3.2 6.9E-05 42.6 8.2 56 83-138 220-277 (466)
116 PRK07846 mycothione reductase; 85.3 3 6.5E-05 42.6 7.8 47 92-138 219-265 (451)
117 PTZ00383 malate:quinone oxidor 85.0 3 6.4E-05 43.3 7.5 60 77-137 207-275 (497)
118 TIGR03140 AhpF alkyl hydropero 85.0 3.3 7.1E-05 43.2 8.0 57 79-135 265-323 (515)
119 TIGR01292 TRX_reduct thioredox 84.5 3.4 7.4E-05 39.0 7.4 58 78-136 54-113 (300)
120 KOG0241 Kinesin-like protein [ 84.5 3.5 7.5E-05 44.9 7.7 78 298-390 466-544 (1714)
121 TIGR01350 lipoamide_DH dihydro 83.8 4.3 9.3E-05 41.4 8.2 57 82-138 212-272 (461)
122 PLN02507 glutathione reductase 83.7 4.3 9.4E-05 42.1 8.2 56 83-138 246-303 (499)
123 PRK07233 hypothetical protein; 83.3 3.3 7.2E-05 41.6 7.1 54 81-134 198-253 (434)
124 TIGR01320 mal_quin_oxido malat 83.2 4.7 0.0001 41.6 8.2 61 76-136 173-241 (483)
125 PRK09897 hypothetical protein; 82.7 4.3 9.4E-05 42.4 7.7 40 94-133 124-164 (534)
126 PRK06416 dihydrolipoamide dehy 82.6 4.9 0.00011 41.1 8.1 57 82-138 214-275 (462)
127 TIGR03378 glycerol3P_GlpB glyc 82.3 5.6 0.00012 40.2 8.0 61 77-137 259-325 (419)
128 TIGR00551 nadB L-aspartate oxi 82.1 3.8 8.3E-05 42.3 7.1 57 81-137 128-191 (488)
129 TIGR03452 mycothione_red mycot 81.9 5.3 0.00011 40.8 7.9 47 92-138 222-268 (452)
130 TIGR02734 crtI_fam phytoene de 80.9 5.4 0.00012 41.2 7.7 57 81-137 219-278 (502)
131 TIGR01424 gluta_reduc_2 glutat 80.0 6.7 0.00014 40.0 7.9 55 83-137 209-265 (446)
132 TIGR03329 Phn_aa_oxid putative 79.3 7.2 0.00016 39.9 7.9 58 77-136 179-238 (460)
133 PTZ00363 rab-GDP dissociation 78.9 6.4 0.00014 40.2 7.3 53 81-133 232-288 (443)
134 TIGR01176 fum_red_Fp fumarate 78.6 6.8 0.00015 41.5 7.6 57 81-137 132-197 (580)
135 PRK07804 L-aspartate oxidase; 78.5 5.6 0.00012 41.8 6.9 57 81-137 144-212 (541)
136 TIGR03467 HpnE squalene-associ 77.6 4.9 0.00011 40.0 6.0 50 85-134 201-253 (419)
137 TIGR02730 carot_isom carotene 76.5 8.4 0.00018 39.8 7.5 58 81-138 229-289 (493)
138 TIGR01373 soxB sarcosine oxida 76.2 7.6 0.00016 38.9 6.9 60 78-138 180-244 (407)
139 PLN02612 phytoene desaturase 75.7 8 0.00017 40.8 7.2 51 83-133 310-364 (567)
140 PRK07818 dihydrolipoamide dehy 75.6 11 0.00024 38.6 8.1 57 82-138 214-276 (466)
141 PRK06327 dihydrolipoamide dehy 75.6 9.8 0.00021 39.1 7.7 57 82-138 225-287 (475)
142 TIGR02374 nitri_red_nirB nitri 74.9 8.9 0.00019 42.2 7.5 47 92-138 195-241 (785)
143 TIGR01812 sdhA_frdA_Gneg succi 74.5 9.6 0.00021 40.2 7.4 56 82-137 130-193 (566)
144 PF06039 Mqo: Malate:quinone o 74.1 8.4 0.00018 39.2 6.4 62 76-137 176-246 (488)
145 PLN02576 protoporphyrinogen ox 73.6 10 0.00022 39.1 7.3 51 81-131 239-293 (496)
146 PLN02328 lysine-specific histo 72.8 8.2 0.00018 42.4 6.4 48 80-131 436-483 (808)
147 TIGR01423 trypano_reduc trypan 72.6 13 0.00028 38.5 7.7 58 81-138 231-291 (486)
148 PTZ00052 thioredoxin reductase 71.9 15 0.00032 38.2 7.9 55 85-139 226-282 (499)
149 PRK06912 acoL dihydrolipoamide 71.6 17 0.00036 37.2 8.2 56 82-138 212-271 (458)
150 TIGR03364 HpnW_proposed FAD de 71.0 14 0.00031 36.2 7.3 55 77-136 141-198 (365)
151 PLN02529 lysine-specific histo 70.9 11 0.00024 41.1 6.8 47 80-130 356-402 (738)
152 PRK06115 dihydrolipoamide dehy 70.8 16 0.00034 37.5 7.8 56 83-138 217-279 (466)
153 TIGR03862 flavo_PP4765 unchara 70.1 17 0.00036 36.3 7.5 58 77-136 82-142 (376)
154 TIGR03385 CoA_CoA_reduc CoA-di 70.0 17 0.00037 36.7 7.8 56 83-140 181-238 (427)
155 TIGR01813 flavo_cyto_c flavocy 69.3 17 0.00037 36.8 7.7 57 81-137 130-194 (439)
156 COG1233 Phytoene dehydrogenase 68.9 12 0.00026 38.7 6.5 54 80-133 223-279 (487)
157 PTZ00318 NADH dehydrogenase-li 68.8 14 0.00031 37.3 6.9 49 83-135 230-280 (424)
158 PRK08010 pyridine nucleotide-d 68.7 19 0.00042 36.5 7.9 55 82-137 200-256 (441)
159 PLN03000 amine oxidase 68.6 13 0.00028 41.2 6.8 48 80-131 380-427 (881)
160 PLN02976 amine oxidase 68.5 14 0.00029 43.2 7.1 48 80-130 935-992 (1713)
161 COG1251 NirB NAD(P)H-nitrite r 68.2 5.6 0.00012 42.6 3.8 45 93-137 201-245 (793)
162 COG1232 HemY Protoporphyrinoge 68.2 13 0.00027 38.0 6.3 48 81-129 215-262 (444)
163 TIGR01421 gluta_reduc_1 glutat 68.1 20 0.00043 36.6 7.8 56 83-138 209-268 (450)
164 PRK14989 nitrite reductase sub 68.0 17 0.00038 40.3 7.8 54 86-139 192-249 (847)
165 PF12831 FAD_oxidored: FAD dep 67.9 1.7 3.7E-05 44.1 0.0 63 78-140 87-155 (428)
166 KOG1346 Programmed cell death 67.4 3.8 8.3E-05 40.9 2.3 44 92-135 406-449 (659)
167 TIGR02053 MerA mercuric reduct 67.0 21 0.00046 36.5 7.8 56 83-138 209-269 (463)
168 COG2509 Uncharacterized FAD-de 66.3 20 0.00043 36.4 7.0 54 82-135 174-230 (486)
169 PLN02172 flavin-containing mon 65.9 23 0.0005 36.4 7.8 59 78-136 108-174 (461)
170 PRK11101 glpA sn-glycerol-3-ph 65.8 21 0.00045 37.6 7.6 61 77-137 145-213 (546)
171 TIGR02733 desat_CrtD C-3',4' d 65.6 20 0.00043 36.9 7.4 54 80-133 231-292 (492)
172 PF13434 K_oxygenase: L-lysine 65.4 17 0.00037 35.7 6.5 41 93-133 293-339 (341)
173 PRK06370 mercuric reductase; V 65.1 25 0.00055 35.9 8.0 56 83-138 214-274 (463)
174 PRK14694 putative mercuric red 64.0 26 0.00056 35.9 7.8 56 82-138 219-276 (468)
175 COG1249 Lpd Pyruvate/2-oxoglut 63.7 26 0.00057 35.9 7.6 57 81-137 214-274 (454)
176 PRK05945 sdhA succinate dehydr 63.3 26 0.00056 37.1 7.8 57 81-137 135-199 (575)
177 PRK06467 dihydrolipoamide dehy 62.9 27 0.0006 35.8 7.7 56 83-138 217-277 (471)
178 PF09465 LBR_tudor: Lamin-B re 61.2 11 0.00024 26.3 3.0 32 92-123 17-48 (55)
179 PRK07251 pyridine nucleotide-d 61.0 31 0.00068 34.9 7.7 55 82-137 199-255 (438)
180 PRK09564 coenzyme A disulfide 60.5 35 0.00076 34.5 8.0 58 82-140 192-251 (444)
181 PRK13512 coenzyme A disulfide 60.3 27 0.00058 35.5 7.1 54 83-140 191-246 (438)
182 PLN02464 glycerol-3-phosphate 60.0 36 0.00078 36.5 8.2 61 77-137 228-298 (627)
183 TIGR01438 TGR thioredoxin and 59.4 38 0.00081 35.0 8.0 56 83-138 222-282 (484)
184 TIGR03169 Nterm_to_SelD pyridi 59.3 24 0.00052 34.6 6.4 41 92-136 204-244 (364)
185 PRK06481 fumarate reductase fl 59.3 46 0.00099 34.6 8.7 56 82-137 191-253 (506)
186 PRK06069 sdhA succinate dehydr 59.2 28 0.00061 36.8 7.2 55 83-137 139-202 (577)
187 TIGR00136 gidA glucose-inhibit 58.7 32 0.0007 36.6 7.3 60 77-137 92-156 (617)
188 TIGR03377 glycerol3P_GlpA glyc 57.8 46 0.001 34.6 8.5 61 77-137 124-192 (516)
189 PRK06292 dihydrolipoamide dehy 57.7 40 0.00086 34.3 7.9 56 83-138 212-271 (460)
190 PRK14727 putative mercuric red 57.5 41 0.0009 34.6 8.0 55 83-138 230-286 (479)
191 PRK08401 L-aspartate oxidase; 57.2 38 0.00082 34.8 7.6 56 81-137 120-177 (466)
192 TIGR02731 phytoene_desat phyto 55.6 32 0.00069 34.9 6.7 53 83-135 215-276 (453)
193 PRK08274 tricarballylate dehyd 55.5 40 0.00088 34.4 7.5 57 81-137 131-194 (466)
194 KOG1336 Monodehydroascorbate/f 55.4 25 0.00054 35.8 5.6 49 92-140 268-318 (478)
195 PRK05329 anaerobic glycerol-3- 53.7 58 0.0013 33.1 8.1 57 78-134 256-317 (422)
196 PRK06175 L-aspartate oxidase; 52.8 52 0.0011 33.4 7.7 56 81-136 128-190 (433)
197 PLN02927 antheraxanthin epoxid 51.7 15 0.00032 39.6 3.6 59 245-312 319-381 (668)
198 TIGR02485 CobZ_N-term precorri 51.3 55 0.0012 33.0 7.6 58 81-138 123-186 (432)
199 KOG0685 Flavin-containing amin 49.9 29 0.00063 35.4 5.1 50 81-130 223-281 (498)
200 PRK13748 putative mercuric red 49.4 65 0.0014 33.8 8.0 55 82-137 311-367 (561)
201 PRK07208 hypothetical protein; 49.1 51 0.0011 33.7 7.1 52 82-133 219-278 (479)
202 PRK10262 thioredoxin reductase 47.7 68 0.0015 30.8 7.4 57 83-139 187-252 (321)
203 PRK05976 dihydrolipoamide dehy 46.2 85 0.0018 32.1 8.2 55 83-137 223-283 (472)
204 PTZ00058 glutathione reductase 45.3 76 0.0017 33.5 7.7 56 83-138 280-339 (561)
205 PF13275 S4_2: S4 domain; PDB: 43.3 18 0.0004 26.3 1.9 32 346-386 33-64 (65)
206 PRK06854 adenylylsulfate reduc 43.1 83 0.0018 33.6 7.7 59 79-137 130-197 (608)
207 TIGR01292 TRX_reduct thioredox 41.3 1.2E+02 0.0025 28.3 7.8 48 93-140 191-243 (300)
208 COG5131 URM1 Ubiquitin-like pr 41.1 31 0.00067 26.6 2.9 41 335-378 49-91 (96)
209 PF00743 FMO-like: Flavin-bind 40.1 1E+02 0.0022 32.3 7.6 61 77-137 80-152 (531)
210 PRK07121 hypothetical protein; 39.4 1.2E+02 0.0026 31.2 8.1 57 81-137 177-241 (492)
211 cd01764 Urm1 Urm1-like ubuitin 38.6 27 0.00059 27.3 2.4 28 348-378 62-89 (94)
212 PLN02546 glutathione reductase 38.6 1E+02 0.0023 32.5 7.5 47 92-138 306-353 (558)
213 PRK12837 3-ketosteroid-delta-1 38.5 1.2E+02 0.0026 31.5 7.9 55 83-137 175-238 (513)
214 PF00890 FAD_binding_2: FAD bi 37.6 1.2E+02 0.0027 30.1 7.7 58 79-136 139-204 (417)
215 PRK06134 putative FAD-binding 37.5 1.4E+02 0.003 31.6 8.3 55 83-137 219-280 (581)
216 PRK09077 L-aspartate oxidase; 35.7 98 0.0021 32.4 6.7 57 81-137 138-209 (536)
217 PRK08071 L-aspartate oxidase; 35.6 99 0.0021 32.2 6.7 56 82-137 131-192 (510)
218 PRK08275 putative oxidoreducta 34.9 1.2E+02 0.0026 31.9 7.2 56 82-137 138-202 (554)
219 PF08491 SE: Squalene epoxidas 34.8 24 0.00052 33.5 1.8 17 124-140 2-18 (276)
220 TIGR03140 AhpF alkyl hydropero 34.0 1.5E+02 0.0033 30.8 7.8 49 92-140 401-455 (515)
221 PRK11507 ribosome-associated p 33.2 61 0.0013 23.9 3.3 28 346-379 37-64 (70)
222 PRK07843 3-ketosteroid-delta-1 32.9 1.8E+02 0.0038 30.7 8.2 55 83-137 210-272 (557)
223 COG0665 DadA Glycine/D-amino a 32.3 1.5E+02 0.0032 29.0 7.1 60 77-137 152-214 (387)
224 COG0446 HcaD Uncharacterized N 31.7 1.5E+02 0.0032 29.1 7.0 57 81-137 178-239 (415)
225 COG3486 IucD Lysine/ornithine 31.4 1.3E+02 0.0029 30.2 6.3 46 92-137 291-342 (436)
226 KOG1335 Dihydrolipoamide dehyd 31.4 1.9E+02 0.004 29.2 7.2 46 92-137 265-316 (506)
227 COG3380 Predicted NAD/FAD-depe 31.2 41 0.00088 32.0 2.6 49 80-131 107-156 (331)
228 COG2501 S4-like RNA binding pr 31.1 91 0.002 23.2 3.9 33 337-379 32-64 (73)
229 PRK09564 coenzyme A disulfide 30.9 1.1E+02 0.0023 31.0 6.0 45 93-137 70-117 (444)
230 COG1252 Ndh NADH dehydrogenase 30.8 1.2E+02 0.0026 30.7 6.0 43 93-139 223-268 (405)
231 TIGR02732 zeta_caro_desat caro 30.4 1.6E+02 0.0035 30.2 7.2 56 85-140 223-289 (474)
232 KOG4146 Ubiquitin-like protein 30.1 55 0.0012 25.4 2.7 40 336-378 55-96 (101)
233 PRK06263 sdhA succinate dehydr 29.8 1.5E+02 0.0032 31.1 6.9 57 81-137 134-199 (543)
234 PRK07573 sdhA succinate dehydr 29.4 2E+02 0.0043 30.9 7.9 53 85-137 174-234 (640)
235 PF10387 DUF2442: Protein of u 28.7 84 0.0018 23.4 3.6 25 102-126 1-26 (79)
236 PRK15317 alkyl hydroperoxide r 28.5 1.9E+02 0.0042 30.0 7.5 49 92-140 400-454 (517)
237 PRK09754 phenylpropionate diox 28.2 1.3E+02 0.0027 30.0 5.8 42 93-136 72-113 (396)
238 PRK08205 sdhA succinate dehydr 26.7 2.2E+02 0.0048 30.2 7.6 57 81-137 140-208 (583)
239 COG0492 TrxB Thioredoxin reduc 26.2 2.3E+02 0.0049 27.4 7.0 58 78-137 58-117 (305)
240 PRK12843 putative FAD-binding 26.0 3.2E+02 0.0068 28.9 8.6 59 82-140 222-287 (578)
241 PRK07512 L-aspartate oxidase; 25.7 1.6E+02 0.0035 30.6 6.3 57 81-137 136-199 (513)
242 PRK12844 3-ketosteroid-delta-1 25.1 2.9E+02 0.0062 29.1 8.1 54 83-136 210-271 (557)
243 PF07992 Pyr_redox_2: Pyridine 24.3 59 0.0013 28.4 2.4 46 92-137 71-124 (201)
244 PF08804 gp32: gp32 DNA bindin 24.1 70 0.0015 25.0 2.3 20 332-351 41-60 (94)
245 PRK12842 putative succinate de 23.9 3.1E+02 0.0067 28.9 8.1 55 82-136 215-276 (574)
246 cd04486 YhcR_OBF_like YhcR_OBF 23.9 1.3E+02 0.0028 22.5 3.9 35 335-379 16-56 (78)
247 KOG4254 Phytoene desaturase [C 23.8 1.2E+02 0.0027 31.0 4.6 54 81-134 264-320 (561)
248 PRK06452 sdhA succinate dehydr 23.4 3.2E+02 0.0069 28.9 8.0 56 82-137 137-200 (566)
249 KOG0029 Amine oxidase [Seconda 23.4 1.9E+02 0.0041 30.1 6.2 38 93-130 228-266 (501)
250 TIGR03385 CoA_CoA_reduc CoA-di 23.4 1.8E+02 0.004 29.1 6.1 43 93-135 58-103 (427)
251 PF11142 DUF2917: Protein of u 23.3 2.5E+02 0.0054 20.1 5.0 43 325-377 15-57 (63)
252 TIGR03169 Nterm_to_SelD pyridi 23.2 1.2E+02 0.0025 29.7 4.5 42 93-137 68-109 (364)
253 PTZ00153 lipoamide dehydrogena 22.2 3.1E+02 0.0068 29.6 7.7 45 93-137 368-429 (659)
254 PF04710 Pellino: Pellino; In 22.1 2.6E+02 0.0056 28.0 6.3 53 298-353 95-167 (416)
255 PRK01777 hypothetical protein; 22.0 88 0.0019 24.6 2.7 29 344-379 48-76 (95)
256 TIGR01372 soxA sarcosine oxida 21.6 2.7E+02 0.0058 31.7 7.4 55 86-140 356-416 (985)
257 PF09138 Urm1: Urm1 (Ubiquitin 20.9 42 0.0009 26.5 0.6 32 343-377 57-90 (96)
258 TIGR02374 nitri_red_nirB nitri 20.6 1.7E+02 0.0038 32.2 5.6 42 93-136 68-109 (785)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=2.8e-48 Score=402.64 Aligned_cols=404 Identities=70% Similarity=1.165 Sum_probs=322.4
Q ss_pred cccCcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHH
Q 015167 4 IRGEGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTL 83 (412)
Q Consensus 4 ~~~~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L 83 (412)
+++.|..+++|.|++|++++|++|++++.+++.+.+......+..+.++..|..+..++........+.++.+.|+|.+|
T Consensus 117 ~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L 196 (668)
T PLN02927 117 IRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDRINGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTL 196 (668)
T ss_pred cccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccceeeeeeecCCCceEeeccccccccccCCCeEEEEeHHHH
Confidence 45566667889999999999999955567888776654322221244544666655555322222234554578999999
Q ss_pred HHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH-HH----------------------
Q 015167 84 QQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN-LL---------------------- 140 (412)
Q Consensus 84 ~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr-~~---------------------- 140 (412)
+++|.+.++...++++++|+++++++++|++++.||+++++|+||||||++|.+| .+
T Consensus 197 ~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p 276 (668)
T PLN02927 197 QQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIP 276 (668)
T ss_pred HHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCc
Confidence 9999999976668999999999999999999999999999999999999999994 33
Q ss_pred ---------------------------Hhhhhc---------------------------c-------cc---c------
Q 015167 141 ---------------------------MSWLLC---------------------------L-------SS---L------ 150 (412)
Q Consensus 141 ---------------------------~~~~~~---------------------------~-------~d---~------ 150 (412)
+.|+.+ . .+ +
T Consensus 277 ~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iy 356 (668)
T PLN02927 277 ADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIY 356 (668)
T ss_pred ccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEE
Confidence 001000 0 00 0
Q ss_pred ------cc-------cCccccc----------------------------------------hhhccccccccceeeeeh
Q 015167 151 ------KL-------TTRIVHA----------------------------------------SKLCSYESARRLRVAIIH 177 (412)
Q Consensus 151 ------~~-------~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~ 177 (412)
.| .|+..|+ .++..|...|++++..++
T Consensus 357 d~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~ 436 (668)
T PLN02927 357 DRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIH 436 (668)
T ss_pred eccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 00 0111111 123344556666777777
Q ss_pred hhhHHHHHHhhhccceeecCCccccceeeeecCCCCcccchheecccCCeEEEEEEeeeCCCCCCCCCccchhhHHHHHh
Q 015167 178 RLARSAAMMASTYNGYLSVGLGPLSFLTKFWIPHPGRVVRRFFIDLAMPLMLNWVLGGNSSKLEGRSPCCRLSDKASDQL 257 (412)
Q Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (412)
+.++....+...+..|++.+.+++.++..+.+||++++.+|+++...+|..+.|++.++.+.++.+.....+.+.+.+.+
T Consensus 437 ~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (668)
T PLN02927 437 AMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADDRL 516 (668)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHhhhhhcCCccccCCCCCccccccchhHHH
Confidence 77777777777788888877788888899999999999999999999999999999999999987667778889999999
Q ss_pred hcccCCchhhhhccCCceEEEEcCCCCCccccEEeeccCCCCCEEecCCCCCCCCceeEEeCCCcccccceEEEEECCEE
Q 015167 258 RTWLRDNDALERAMNGEWLLVPSGSETVVSQPIYLSRSDENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGAF 337 (412)
Q Consensus 258 ~~W~p~~~~l~~a~~~~w~l~~~~~~~~~~~~i~l~~~~~~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~~ 337 (412)
..|-..+.++.+++.++|.|+|.++....+++|+|.+ +++.|++|||.++++.|+..++|+++.||+.||+|.++++.|
T Consensus 517 ~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~~-~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~ 595 (668)
T PLN02927 517 REWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLTK-DEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAF 595 (668)
T ss_pred HHHhcccHHHHHhhcCCeEEEecCCCCcccceeeeec-CCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECCEE
Confidence 9999999999999999999999988777778999987 788999999999999999999999999999999999999999
Q ss_pred EEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEECCCCceEEEEEEeccCCCCCCccccc--ccccccc
Q 015167 338 YLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSDKKATFQVKVIRSTPKKNSEKEVE--GEILQAV 409 (412)
Q Consensus 338 ~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~~~~~f~~~~~~~~~~~~~~~~~~--~~~~~~~ 409 (412)
||+||+|+||||||++.++++++.||.+++|++||+|.||+.+++.|+++.++.+|.. +.+.++ .+.+|++
T Consensus 596 ~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~~~~~~~-~~~~~~~~~~~~~~~ 668 (668)
T PLN02927 596 FLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIRKTPKS-TRKNESNNDKLLQTA 668 (668)
T ss_pred EEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEeecCCCcc-hhhcccchhhhhhcC
Confidence 9999999999999999999999999999999999999999987888999999999987 454444 3577764
No 2
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.70 E-value=1.1e-15 Score=153.42 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=97.5
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcc-cccCCCeEEEEeHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQ 85 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~g~~~~~~i~r~~L~~ 85 (412)
..+.|+|+.|+|+++++|+++ |+++++.+.+.... .+ .+.++..+......+..... ...+.++ +.++|.+|.+
T Consensus 37 ~~~~g~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~ 111 (400)
T PRK06475 37 LSEVGAGLQLAPNAMRHLERL--GVADRLSGTGVTPK-AL-YLMDGRKARPLLAMQLGDLARKRWHHPY-IVCHRADLQS 111 (400)
T ss_pred cCcCCccceeChhHHHHHHHC--CChHHHhhcccCcc-eE-EEecCCCcceEEEecchhhhhhcCCCCc-eeECHHHHHH
Confidence 456899999999999999999 99999988776443 34 45554344333332222111 1124454 6899999999
Q ss_pred HHHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEc---cCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV---GNDIILNDSNVIDFMDHGDKVSVMLE---NGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~---dG~~~~adllVgADG~~S~vr~~ 140 (412)
+|++.+ ++++++++++|++++++++++++++. ++++++|||||||||+||.||..
T Consensus 112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~ 172 (400)
T PRK06475 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRAK 172 (400)
T ss_pred HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccHhHHhh
Confidence 999988 46889999999999998888888874 34579999999999999999655
No 3
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.68 E-value=1.4e-16 Score=118.76 Aligned_cols=67 Identities=34% Similarity=0.716 Sum_probs=61.1
Q ss_pred EEecCCCCCCCCceeEEeCCCcccccceEEEEECC-EEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEEC
Q 015167 301 YLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDG-AFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFG 377 (412)
Q Consensus 301 ~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~-~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G 377 (412)
++|||.+. |++.++++.|||.||.|.++++ .|+|+|++|+||||||+. ++.++.+++|++||+|.||
T Consensus 1 ~~iGR~~~-----~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD-----CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT-----SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC-----CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 58999965 4699999999999999999999 999999999999999998 9999999999999999998
No 4
>PRK07588 hypothetical protein; Provisional
Probab=99.66 E-value=5e-15 Score=148.22 Aligned_cols=127 Identities=18% Similarity=0.212 Sum_probs=103.1
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
...|+++.++++++++|++| |+++.+.+.+.+.. .+ .+++ .+|+.+..++........|.++ +.++|.+|.++|
T Consensus 36 ~~~g~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~g~~~~~~~~~~~~~~~g~~~-~~i~r~~l~~~L 109 (391)
T PRK07588 36 RTGGYMVDFWGVGYEVAKRM--GITDQLREAGYQIE-HV-RSVD-PTGRRKADLNVDSFRRMVGDDF-TSLPRGDLAAAI 109 (391)
T ss_pred cCCCeEEeccCcHHHHHHHc--CCHHHHHhccCCcc-ce-EEEc-CCCCEEEEecHHHccccCCCce-EEEEHHHHHHHH
Confidence 34688899999999999999 99999998776544 34 4666 4677666665443322334453 689999999999
Q ss_pred HhhcC-CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 88 AHAVG-NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l~-~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
++.++ +++++++++|+++++++++++|+++||+++++|+||||||++|.||..
T Consensus 110 ~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 110 YTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCccchhh
Confidence 99884 589999999999999889999999999999999999999999999543
No 5
>PRK07538 hypothetical protein; Provisional
Probab=99.65 E-value=1.9e-14 Score=145.16 Aligned_cols=127 Identities=26% Similarity=0.297 Sum_probs=97.2
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQI 86 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~ 86 (412)
..+.|.|+.|+|+++++|+++ |+++.+.+.+.+.. .+ .+++ .+|+.+...+... ...+..|. +.++|..|+++
T Consensus 35 ~~~~g~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~~-~~-~~~~-~~g~~~~~~~~~~-~~~~~~~~-~~i~R~~l~~~ 107 (413)
T PRK07538 35 LRPLGVGINLLPHAVRELAEL--GLLDALDAIGIRTR-EL-AYFN-RHGQRIWSEPRGL-AAGYDWPQ-YSIHRGELQML 107 (413)
T ss_pred ccccCcceeeCchHHHHHHHC--CCHHHHHhhCCCCc-ce-EEEc-CCCCEEeeccCCc-ccCCCCce-EEEEHHHHHHH
Confidence 356799999999999999999 99999988776544 33 4666 4666654433211 11234443 68999999999
Q ss_pred HHhhc----CCCEEEcCCeEEEEEEeCCeEEEEEccC-----cEEEeCEEEEecCcCchhHHH
Q 015167 87 LAHAV----GNDIILNDSNVIDFMDHGDKVSVMLENG-----QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 87 L~~~l----~~~~i~~~~~v~~i~~~~~~v~v~~~dG-----~~~~adllVgADG~~S~vr~~ 140 (412)
|++.+ +.+.++++++|++++++++++.+.+.++ .+++||+||||||++|.||..
T Consensus 108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~ 170 (413)
T PRK07538 108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQ 170 (413)
T ss_pred HHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCHHHhhh
Confidence 99876 3457999999999998888888888764 379999999999999999543
No 6
>PRK05868 hypothetical protein; Validated
Probab=99.64 E-value=2.8e-14 Score=141.91 Aligned_cols=128 Identities=23% Similarity=0.245 Sum_probs=99.7
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCC-cccccCCCeEEEEeHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQ 85 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~~~~g~~~~~~i~r~~L~~ 85 (412)
..+.|++|.+.++++++|++| |+++.+.+.+.... .+ .+++ .+|+.+....... .....+.+ .+.++|.+|.+
T Consensus 36 ~~~~g~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~~-~~-~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~ 109 (372)
T PRK05868 36 LRPGGQAIDVRGPALDVLERM--GLLAAAQEHKTRIR-GA-SFVD-RDGNELFRDTESTPTGGPVNSP-DIELLRDDLVE 109 (372)
T ss_pred CCCCceeeeeCchHHHHHHhc--CCHHHHHhhccCcc-ce-EEEe-CCCCEEeecccccccCCCCCCc-eEEEEHHHHHH
Confidence 456789999999999999999 99999987765444 34 4666 4666554322111 11111233 26899999999
Q ss_pred HHHhhc-CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV-GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l-~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+|.+.+ ++++++++++|+++++++++|+|+|+||++++||+||||||+||.||..
T Consensus 110 ~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S~vR~~ 165 (372)
T PRK05868 110 LLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHSNVRRL 165 (372)
T ss_pred HHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCchHHHH
Confidence 998877 5788999999999998888999999999999999999999999999544
No 7
>PRK06753 hypothetical protein; Provisional
Probab=99.64 E-value=1.8e-14 Score=143.24 Aligned_cols=123 Identities=27% Similarity=0.338 Sum_probs=100.6
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQI 86 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~ 86 (412)
..+.|+|+.|+++++++|+.+ |+++.+.+.+.+.. .+ .+++ .+|+.+..++.. .+.+ .+.++|.+|.++
T Consensus 35 ~~~~g~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~~-~~-~~~~-~~g~~~~~~~~~-----~~~~-~~~i~R~~l~~~ 103 (373)
T PRK06753 35 VKEVGAGIGIGDNVIKKLGNH--DLAKGIKNAGQILS-TM-NLLD-DKGTLLNKVKLK-----SNTL-NVTLHRQTLIDI 103 (373)
T ss_pred ccccccceeeChHHHHHHHhc--ChHHHHHhcCCccc-ce-eEEc-CCCCEEeecccc-----cCCc-cccccHHHHHHH
Confidence 346789999999999999999 99999988765444 34 4666 467655444331 1222 368999999999
Q ss_pred HHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 87 LAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 87 L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
|.+.++...++++++|++++++++++.|+++||+++++|+||||||.+|.||..
T Consensus 104 L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~vR~~ 157 (373)
T PRK06753 104 IKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKVRQS 157 (373)
T ss_pred HHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHHHHH
Confidence 999997778999999999998888999999999999999999999999999544
No 8
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.63 E-value=2e-14 Score=145.00 Aligned_cols=125 Identities=20% Similarity=0.273 Sum_probs=93.2
Q ss_pred cCcccccceeeCHHHHHHHHHcccChHHHHHhcccccc---ccee-EEEECCCCcEEEEEeCCCcccccCCCeEEEEeHH
Q 015167 6 GEGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG---DRIN-GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRM 81 (412)
Q Consensus 6 ~~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~---~~~~-~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~ 81 (412)
..++.|+||.|+|+++++|++| |+.+.+.+.+.... ..+. .+.++..++.+.. ... .+.+. ..++|.
T Consensus 35 ~~~~~G~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~-~~i~R~ 105 (414)
T TIGR03219 35 AFGEVGAGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQDIWFEWRNGSDASYLGA-TIA-----PGVGQ-SSVHRA 105 (414)
T ss_pred cCCCCccceeeCccHHHHHHHc--CChhHHHHHhcCCCccCcceeEEEEecCccceeee-ecc-----ccCCc-ccCCHH
Confidence 3567899999999999999999 99888876553211 1110 1223222222211 110 12221 479999
Q ss_pred HHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 82 TLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 82 ~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
+|.+.|.+.++...++++++|++++++++++.|+|+||+++++|+||||||++|.||.
T Consensus 106 ~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~vR~ 163 (414)
T TIGR03219 106 DFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRD 163 (414)
T ss_pred HHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHHHHH
Confidence 9999999999777789999999999988899999999999999999999999999953
No 9
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.61 E-value=1.3e-14 Score=145.00 Aligned_cols=126 Identities=26% Similarity=0.269 Sum_probs=102.1
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQI 86 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~ 86 (412)
.-+.|.+++|+++++++|+++ |+++.+.+.+..+...+ .+.+ .+.....++..... +.++.++++|.+|.++
T Consensus 38 ~~~~~r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 109 (387)
T COG0654 38 LLERGRGIALSPNALRALERL--GLWDRLEALGVPPLHVM-VVDD--GGRRLLIFDAAELG---RGALGYVVPRSDLLNA 109 (387)
T ss_pred cccCceeeeecHhHHHHHHHc--CChhhhhhccCCceeeE-EEec--CCceeEEecccccC---CCcceEEeEhHHHHHH
Confidence 346779999999999999999 99899998887666543 2333 33334455554432 1333589999999999
Q ss_pred HHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEc-cCcEEEeCEEEEecCcCchhHHH
Q 015167 87 LAHAV---GNDIILNDSNVIDFMDHGDKVSVMLE-NGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 87 L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~-dG~~~~adllVgADG~~S~vr~~ 140 (412)
|.+.+ ++++++++++|+.++++++.++++++ ||++++|||||||||+||.||..
T Consensus 110 L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR~~ 167 (387)
T COG0654 110 LLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVRRA 167 (387)
T ss_pred HHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCchHHHHh
Confidence 99998 56899999999999999999999999 99999999999999999999655
No 10
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.61 E-value=5.9e-14 Score=140.62 Aligned_cols=129 Identities=27% Similarity=0.378 Sum_probs=103.7
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcc-cccCCCeEEEEeHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQ 85 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~g~~~~~~i~r~~L~~ 85 (412)
.++.|+||.|+|+++++|++| |+++.+.+.+.... .+ .+++..+|+.+..++..... ...+.++ +.++|.+|.+
T Consensus 39 ~~~~g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~ 113 (396)
T PRK08163 39 IGEIGAGIQLGPNAFSALDAL--GVGEAARQRAVFTD-HL-TMMDAVDAEEVVRIPTGQAFRARFGNPY-AVIHRADIHL 113 (396)
T ss_pred cccccceeeeCchHHHHHHHc--CChHHHHhhccCCc-ce-EEEeCCCCCEEEEeccchhHHHhcCCcE-EEEEHHHHHH
Confidence 456799999999999999999 99999988765444 34 46664467766666544321 1235564 6899999999
Q ss_pred HHHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.|.+.+ +++++++++++++++++++++.+++.+|++++||+||+|||++|.+|..
T Consensus 114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~ 171 (396)
T PRK08163 114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQS 171 (396)
T ss_pred HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhh
Confidence 999987 3588999999999998888899999999999999999999999999544
No 11
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.56 E-value=3.2e-14 Score=137.42 Aligned_cols=257 Identities=22% Similarity=0.312 Sum_probs=154.2
Q ss_pred ccccCcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHH
Q 015167 3 AIRGEGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMT 82 (412)
Q Consensus 3 ~~~~~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~ 82 (412)
.+|++ |++|.|.-|++++|+.+ |+-+++...+.+...++ ..+..+|+...+++..+..+ + ...++.|..
T Consensus 36 ~~R~~---g~si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v--~~~~~sg~~~~~~~~~~~~~-~---i~r~~~r~l 104 (420)
T KOG2614|consen 36 DPRGE---GTSINLALNGWRALKAI--GLKEQIREQGIPLGGRV--LIHGDSGKEVSRILYGEPDE-Y---ILRINRRNL 104 (420)
T ss_pred ccccC---CcceeehhhHHHHHHHc--ccHHHHHHhcCccccee--eeecCCCCeeEecccCCchH-H---HHHHHHHHH
Confidence 45666 89999999999999999 89999999998877653 44556888888877655321 1 013567788
Q ss_pred HHHHHHhhcCCCEEEcCC------eEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHHHhhhhccccccccCcc
Q 015167 83 LQQILAHAVGNDIILNDS------NVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLLMSWLLCLSSLKLTTRI 156 (412)
Q Consensus 83 L~~~L~~~l~~~~i~~~~------~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~~~~~~~~~d~~~~~~~ 156 (412)
|..+|.+++|...|+|+. ....++.......+++.||.++.+||||||||++|.||..++...
T Consensus 105 l~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~~~dlligCDGa~S~Vr~~l~~~~----------- 173 (420)
T KOG2614|consen 105 LQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTVKGDLLIGCDGAYSKVRKWLGFKE----------- 173 (420)
T ss_pred HHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEEEeeEEEEcCchHHHHHHHhcccC-----------
Confidence 888888888877777775 444455555567789999999999999999999999953311110
Q ss_pred ccchhhccccccccceeeeehhhhHHHHHHhhhccceeecCCccccc-eeeeecCCCCcccchheecccCCeEEEEEEe-
Q 015167 157 VHASKLCSYESARRLRVAIIHRLARSAAMMASTYNGYLSVGLGPLSF-LTKFWIPHPGRVVRRFFIDLAMPLMLNWVLG- 234 (412)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~- 234 (412)
++ ..+++.|.|.+-.+... +..-.|...+... +.++........+|...
T Consensus 174 -----------p~-----------------~~~~~ayrg~~~~~~~~~~~~~vf~~~~~~~-~~~~~~~~~~~~y~~~~k 224 (420)
T KOG2614|consen 174 -----------PR-----------------YDGSQAYRGLGFIPNGIPFGKKVFAIYGNGL-HSWPRPGFHLIAYWFLDK 224 (420)
T ss_pred -----------Cc-----------------ceeEEEEeeeeeccCCCCcccceecccCCeE-EEcccCCceEEEEEeecC
Confidence 11 12223333322100000 0000111110000 01110001112577663
Q ss_pred -eeCCCCCCCCCccchhhHHHHHhhcccCCchhhhhccCCceEE-EEcCCCCCccccEEeeccCCCCCEEecCCCCCCCC
Q 015167 235 -GNSSKLEGRSPCCRLSDKASDQLRTWLRDNDALERAMNGEWLL-VPSGSETVVSQPIYLSRSDENEPYLIGSESQEDFP 312 (412)
Q Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~W~p~~~~l~~a~~~~w~l-~~~~~~~~~~~~i~l~~~~~~~~~~iGR~~~~~~~ 312 (412)
.....+.....++-++...++.+..|+.....++..++.+-.. .+...... .++-...-+..+.+++|.+.|...|
T Consensus 225 ~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p--~~~i~~~~s~~~vvL~GDAaHaM~P 302 (420)
T KOG2614|consen 225 SLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPP--WPLISVKCSPGNVVLLGDAAHAMTP 302 (420)
T ss_pred CcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCC--cCeeeeccCCCeEEEecccccccCC
Confidence 2333344344667777788999999998888888877543222 21222211 2221111123467999999999998
No 12
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.53 E-value=2.1e-13 Score=135.74 Aligned_cols=121 Identities=16% Similarity=0.154 Sum_probs=98.0
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
..|.+++|+|+++++|++| |+|+.+.+.+.+.. .+ .+++ .+|.....++... ..++.+.++|.+|.++|+
T Consensus 42 ~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~g~~~~~~~~~~-----~~~~g~~v~r~~L~~~L~ 111 (374)
T PRK06617 42 KDIRTTALTPHSKNFLFSI--DIWEELEKFVAEMQ-DI-YVVD-NKASEILDLRNDA-----DAVLGYVVKNSDFKKILL 111 (374)
T ss_pred cCceEEEeCHHHHHHHHHC--CcHHHHHhhcCCCc-EE-EEEE-CCCceEEEecCCC-----CCCcEEEEEHHHHHHHHH
Confidence 3588999999999999999 99999987665433 45 4677 4666655655421 222358999999999999
Q ss_pred hhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 89 HAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+++ ++++++++++++++.++++++.|+|+++ +++|||||||||++|.||..
T Consensus 112 ~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S~vR~~ 165 (374)
T PRK06617 112 SKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANSKVRSH 165 (374)
T ss_pred HHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCchhHHh
Confidence 987 4578999999999999989999999877 89999999999999999544
No 13
>PRK07236 hypothetical protein; Provisional
Probab=99.50 E-value=6.4e-13 Score=132.81 Aligned_cols=117 Identities=23% Similarity=0.213 Sum_probs=92.0
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
...|+||.|+|+++++|+++ |+++.. +.+.+.. .+ .+.+ .+|+.+...+. .. ..+.|..|.+.|
T Consensus 43 ~~~g~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~-~~-~~~~-~~g~~~~~~~~-------~~---~~~~~~~l~~~L 106 (386)
T PRK07236 43 DGRGAGIVLQPELLRALAEA--GVALPA-DIGVPSR-ER-IYLD-RDGRVVQRRPM-------PQ---TQTSWNVLYRAL 106 (386)
T ss_pred CCCCceeEeCHHHHHHHHHc--CCCccc-ccccCcc-ce-EEEe-CCCCEeeccCC-------Cc---cccCHHHHHHHH
Confidence 35789999999999999999 887765 4443333 23 3555 45665432221 11 246789999999
Q ss_pred HhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 88 AHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+.++.+.++++++|+++++++++++++|+||++++||+||||||++|.||..
T Consensus 107 ~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~vR~~ 159 (386)
T PRK07236 107 RAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTVRAQ 159 (386)
T ss_pred HHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchHHHH
Confidence 99998888999999999999888999999999999999999999999999544
No 14
>PRK08013 oxidoreductase; Provisional
Probab=99.41 E-value=2.5e-12 Score=129.17 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=91.6
Q ss_pred ceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCC-CcEEEEEeCCCcccccCCC-eEEEEeHHHHHHHHHhh
Q 015167 13 PIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGIS-GSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAHA 90 (412)
Q Consensus 13 gi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~~~~~~g~~-~~~~i~r~~L~~~L~~~ 90 (412)
+..|+|+++++|+++ |+|+.+.+.+..+...+ .+++... ++. .++... .+.+ ..+.|+|..|+++|.+.
T Consensus 50 ~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~----~~~~~~~~~i~r~~l~~~L~~~ 120 (400)
T PRK08013 50 VSAINAASEKLLTRL--GVWQDILARRASCYHGM-EVWDKDSFGRI--AFDDQS----MGYSHLGHIIENSVIHYALWQK 120 (400)
T ss_pred eeecchhHHHHHHHc--CCchhhhhhcCccccEE-EEEeCCCCceE--EEcccc----cCCCccEEEEEhHHHHHHHHHH
Confidence 457899999999999 99999987643333344 4666321 222 222211 1222 13689999999999998
Q ss_pred c---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 91 V---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 91 l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+ ++++++++++|++++++++++++++.||++++|||||||||++|.||..
T Consensus 121 ~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S~vR~~ 173 (400)
T PRK08013 121 AQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANSWLRNK 173 (400)
T ss_pred HhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCcHHHHH
Confidence 7 4689999999999999889999999999999999999999999999544
No 15
>PRK06847 hypothetical protein; Provisional
Probab=99.41 E-value=9.6e-12 Score=123.65 Aligned_cols=126 Identities=31% Similarity=0.403 Sum_probs=99.4
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
...|+|+.++++++++|+++ |+++.+.+.+.+.. .+ .+++ .+|+.+..++...... ...+....++|..|.+.|
T Consensus 40 ~~~g~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~~-~~-~~~~-~~g~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L 113 (375)
T PRK06847 40 RVYGAGITLQGNALRALREL--GVLDECLEAGFGFD-GV-DLFD-PDGTLLAELPTPRLAG-DDLPGGGGIMRPALARIL 113 (375)
T ss_pred ccCCceeeecHHHHHHHHHc--CCHHHHHHhCCCcc-ce-EEEC-CCCCEEEecCcccccc-cCCCCcccCcHHHHHHHH
Confidence 45799999999999999999 99999988776544 34 4666 4677665554322111 111212578999999999
Q ss_pred Hhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 88 AHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 88 ~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
.+.+ .+++++++++|++++.+++++.+++.+|+++++|+||+|||.+|.+|.
T Consensus 114 ~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r~ 167 (375)
T PRK06847 114 ADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVRS 167 (375)
T ss_pred HHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchhh
Confidence 9987 468899999999999888889999999999999999999999999943
No 16
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=99.41 E-value=2.6e-12 Score=130.61 Aligned_cols=122 Identities=21% Similarity=0.252 Sum_probs=94.6
Q ss_pred ccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhh
Q 015167 11 RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHA 90 (412)
Q Consensus 11 Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~ 90 (412)
+.+++|+++++++|+++ |+|+.+.+....+...+ .++++ .+.....++... ...++.+.++|..|.++|.+.
T Consensus 55 ~R~~~l~~~s~~~L~~l--G~~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~----~~~~~~~~i~~~~l~~~L~~~ 126 (437)
T TIGR01989 55 NRVSSITPASISFFKKI--GAWDHIQSDRIQPFGRM-QVWDG-CSLALIRFDRDN----GKEDMACIIENDNIQNSLYNR 126 (437)
T ss_pred CCeEEcCHHHHHHHHHc--CchhhhhhhcCCceeeE-EEecC-CCCceEEeecCC----CCCceEEEEEHHHHHHHHHHH
Confidence 46899999999999999 99999987654344345 46663 444344454322 112334789999999999998
Q ss_pred c---C--CCEEEcCCeEEEEEEe-------CCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 91 V---G--NDIILNDSNVIDFMDH-------GDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 91 l---~--~~~i~~~~~v~~i~~~-------~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+ + +++++++++|++++.. +++++|++.+|++++|||||||||++|.||..
T Consensus 127 ~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~ 188 (437)
T TIGR01989 127 LQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKA 188 (437)
T ss_pred HHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHH
Confidence 7 3 5889999999999752 46799999999999999999999999999654
No 17
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.38 E-value=6.1e-12 Score=131.15 Aligned_cols=127 Identities=21% Similarity=0.268 Sum_probs=101.2
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
...+.++.|+++++++|+++ |+++++.+.+.+.. .+ .+++ .+|+.+..++.. .....+++..+.++|..|+++|
T Consensus 46 ~~~~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~g~~~~~~~~~-~~~~~g~~~~~~~~q~~le~~L 119 (538)
T PRK06183 46 YDLPRAVGIDDEALRVLQAI--GLADEVLPHTTPNH-GM-RFLD-AKGRCLAEIARP-STGEFGWPRRNAFHQPLLEAVL 119 (538)
T ss_pred CCCCceeeeCHHHHHHHHHc--CChhHHHhhcccCC-ce-EEEc-CCCCEEEEEcCC-CCCCCCCChhccCChHHHHHHH
Confidence 45678899999999999999 99999988776544 34 4666 467776666641 1222355544689999999999
Q ss_pred Hhhc---CCCEEEcCCeEEEEEEeCCeEEEEEc--cC--cEEEeCEEEEecCcCchhHHH
Q 015167 88 AHAV---GNDIILNDSNVIDFMDHGDKVSVMLE--NG--QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~--dG--~~~~adllVgADG~~S~vr~~ 140 (412)
.+.+ ++++++++++|++++++++++++++. +| .+++||+||||||++|.||..
T Consensus 120 ~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S~vR~~ 179 (538)
T PRK06183 120 RAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANSFVRRT 179 (538)
T ss_pred HHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCchhHHHH
Confidence 9986 57899999999999999999999987 56 479999999999999999544
No 18
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.37 E-value=6.8e-12 Score=126.25 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred cceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc
Q 015167 12 GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV 91 (412)
Q Consensus 12 agi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l 91 (412)
.+++|+++++++|++| |+|+++.+....+...+ .+++. .+.....++..... ..++.+.++|..|.+.|++.+
T Consensus 49 r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~---~~~~g~~~~~~~l~~~L~~~~ 121 (405)
T PRK08850 49 RVSALSRSSEHILRNL--GAWQGIEARRAAPYIAM-EVWEQ-DSFARIEFDAESMA---QPDLGHIVENRVIQLALLEQV 121 (405)
T ss_pred ceecccHHHHHHHHhC--CchhhhhhhhCCcccEE-EEEeC-CCCceEEEeccccC---CCccEEEEEHHHHHHHHHHHH
Confidence 4688999999999999 99999987533333345 46663 32112233322111 112246899999999999987
Q ss_pred ---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 ---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 ---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
++++++++++|++++++++++.|+++||++++|||||||||++|.+|..
T Consensus 122 ~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~vR~~ 173 (405)
T PRK08850 122 QKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWLRRQ 173 (405)
T ss_pred hcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCChhHHH
Confidence 4689999999999999888999999999999999999999999999544
No 19
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.34 E-value=1.2e-11 Score=123.58 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=88.8
Q ss_pred eeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc--
Q 015167 14 IQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV-- 91 (412)
Q Consensus 14 i~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l-- 91 (412)
+.|+|+++++|++| |+|+.+.+....+...+ ..++..... ..++..... ...+.+.+++..|..+|.+++
T Consensus 51 ~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~---~~~~g~~i~~~~l~~~L~~~~~~ 122 (384)
T PRK08849 51 SAISQTSVDLLESL--GAWSSIVAMRVCPYKRL-ETWEHPECR--TRFHSDELN---LDQLGYIVENRLIQLGLWQQFAQ 122 (384)
T ss_pred EEecHHHHHHHHHC--CCchhhhHhhCCccceE-EEEeCCCce--EEecccccC---CCccEEEEEcHHHHHHHHHHHHh
Confidence 58999999999999 99999976432233334 344422222 233322211 111136788889999998886
Q ss_pred -CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 -GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 -~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
++++++++++|+++++++++++|+++||.+++||+||||||++|.||..
T Consensus 123 ~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S~vR~~ 172 (384)
T PRK08849 123 YPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVRQL 172 (384)
T ss_pred CCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCchhHHh
Confidence 5789999999999999989999999999999999999999999999544
No 20
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.33 E-value=2.1e-11 Score=97.88 Aligned_cols=79 Identities=39% Similarity=0.702 Sum_probs=69.2
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEEEC-CEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKD-GAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQF 376 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~-~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~ 376 (412)
+..++|||...+ +++.+++..|||.||+|.++. +.+++.|+.|.||||||+. ++..+.+..|.+||.|.|
T Consensus 21 ~~~~~iGr~~~~----~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn~~-----~~~~~~~~~l~~gd~i~i 91 (102)
T cd00060 21 GGTYTIGRDSDN----CDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVNGQ-----RVSPGEPVRLRDGDVIRL 91 (102)
T ss_pred CCeEEECcCCCc----CCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEECCE-----ECCCCCcEECCCCCEEEE
Confidence 488999999876 369999999999999999998 8899999999999999998 888778999999999999
Q ss_pred CCCCceEEEE
Q 015167 377 GSDKKATFQV 386 (412)
Q Consensus 377 G~~~~~~f~~ 386 (412)
|.. ...|++
T Consensus 92 g~~-~~~~~~ 100 (102)
T cd00060 92 GNT-SISFRF 100 (102)
T ss_pred CCe-EEEEEE
Confidence 973 224554
No 21
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.33 E-value=1.6e-11 Score=123.53 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=92.7
Q ss_pred ceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc-
Q 015167 13 PIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV- 91 (412)
Q Consensus 13 gi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l- 91 (412)
+++|+|+++++|++| |+|+.+.+....+...+ .+++. ++.....++..... ...+.+.++|..|.++|.+.+
T Consensus 51 ~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~---~~~~g~~i~~~~l~~~L~~~~~ 123 (405)
T PRK05714 51 VSALSAASQRILERL--GAWDGIAARRASPYSEM-QVWDG-SGTGQIHFSAASVH---AEVLGHIVENRVVQDALLERLH 123 (405)
T ss_pred chhhhHHHHHHHHHC--ChhhhhhHhhCccceeE-EEEcC-CCCceEEecccccC---CCccEEEEEhHHHHHHHHHHHh
Confidence 568999999999999 99999976433233344 46663 44433444422111 111236899999999999987
Q ss_pred -CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 -GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 -~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.++++++++++++++++++++.|+++||++++||+||||||++|.||..
T Consensus 124 ~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~vR~~ 173 (405)
T PRK05714 124 DSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRRL 173 (405)
T ss_pred cCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCchhHHh
Confidence 3688999999999999988999999999999999999999999999544
No 22
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.33 E-value=7.5e-12 Score=124.17 Aligned_cols=71 Identities=31% Similarity=0.586 Sum_probs=65.0
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCc--ccccceEEEEECCEEEEEEcCCccceeee--CcCCceeecCCCCcEEeCCCCE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQ--VSKMHAHIRYKDGAFYLIDLRSEHGTYIT--DNEGRRYRVSPNFPARFRPSNS 373 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~--vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn--~~~~~~~~l~~~~~~~l~~gd~ 373 (412)
....+|||.+.+ +++|++.. ||+.||+|.++++.|+|+|+ |+|||||| +. ++.++.+++|++||+
T Consensus 23 ~~~~~IGR~~~~-----d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~~~~~~L~~GD~ 91 (396)
T TIGR03354 23 TNGGTIGRSEDC-----DWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGRGNPVRLEQGDR 91 (396)
T ss_pred CCCEEEecCCCC-----CEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCCCCceEcCCCCE
Confidence 467999999975 59999887 99999999999999999998 99999999 66 888888999999999
Q ss_pred EEECCC
Q 015167 374 IQFGSD 379 (412)
Q Consensus 374 i~~G~~ 379 (412)
|+||+.
T Consensus 92 I~iG~~ 97 (396)
T TIGR03354 92 LRLGDY 97 (396)
T ss_pred EEECCE
Confidence 999997
No 23
>PRK07045 putative monooxygenase; Reviewed
Probab=99.31 E-value=2.3e-11 Score=121.69 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=93.3
Q ss_pred cccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHh
Q 015167 10 YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAH 89 (412)
Q Consensus 10 ~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~ 89 (412)
.+.++.|+|+++++|+++ |+++.+.+.+......+ .+. .+|+.+..+++... ...+. .+.++|.+|+++|.+
T Consensus 43 ~~~~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~-~~~--~~g~~~~~~~~~~~-~~~g~--~~~i~r~~l~~~L~~ 114 (388)
T PRK07045 43 QNGADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDAM-RLY--HDKELIASLDYRSA-SALGY--FILIPCEQLRRLLLA 114 (388)
T ss_pred CCcccccCccHHHHHHHc--CCHHHHHhcccccccce-EEe--cCCcEEEEecCCcc-ccCCc--eEEccHHHHHHHHHH
Confidence 455677999999999999 99999988665333333 233 35666665554321 11232 257899999999999
Q ss_pred hc---CCCEEEcCCeEEEEEEeCCe--EEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 90 AV---GNDIILNDSNVIDFMDHGDK--VSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 90 ~l---~~~~i~~~~~v~~i~~~~~~--v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
.+ ++++++++++|+++++++++ +.|++++|+++++|+||||||++|.||.
T Consensus 115 ~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S~vR~ 169 (388)
T PRK07045 115 KLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred HHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCChHHHH
Confidence 87 57899999999999987665 4689999999999999999999999954
No 24
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.27 E-value=7.4e-11 Score=118.96 Aligned_cols=123 Identities=20% Similarity=0.144 Sum_probs=90.2
Q ss_pred cccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHh
Q 015167 10 YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAH 89 (412)
Q Consensus 10 ~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~ 89 (412)
.|.++.|+++++++|+++ |+++++.+.+.+.. .+ .+++ ..+.....++..+.. +..+.+.+.+..|.+.|.+
T Consensus 58 ~g~~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~L~~ 129 (415)
T PRK07364 58 KGQAYALSLLSARIFEGI--GVWEKILPQIGKFR-QI-RLSD-ADYPGVVKFQPTDLG---TEALGYVGEHQVLLEALQE 129 (415)
T ss_pred CCcEEEechHHHHHHHHC--ChhhhhHhhcCCcc-EE-EEEe-CCCCceeeeccccCC---CCccEEEEecHHHHHHHHH
Confidence 488999999999999999 99999988766544 33 4555 344433444432211 1111234444478889988
Q ss_pred hc---CCCEEEcCCeEEEEEEeCCeEEEEEccC---cEEEeCEEEEecCcCchhHHH
Q 015167 90 AV---GNDIILNDSNVIDFMDHGDKVSVMLENG---QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 90 ~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG---~~~~adllVgADG~~S~vr~~ 140 (412)
.+ +++++++++++++++++++++.|++.++ .+++||+||||||++|.||..
T Consensus 130 ~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~ 186 (415)
T PRK07364 130 FLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARSPIRQA 186 (415)
T ss_pred HHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCchhHHH
Confidence 76 5789999999999999888888998743 369999999999999999544
No 25
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.27 E-value=5.6e-11 Score=119.31 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=96.1
Q ss_pred cccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcE----EEEEeCCCcccccCCCeEEEEeHHHHHH
Q 015167 10 YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSW----YIKFDTFTPAAEKGLPVTRVISRMTLQQ 85 (412)
Q Consensus 10 ~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~----l~~~~~~~~~~~~g~~~~~~i~r~~L~~ 85 (412)
.|.|+.|+++++++|++| |+++.+.+.+.+.. .+ .+++...+.. ...++.. ...+.++.+.++|..|.+
T Consensus 43 ~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~r~~l~~ 115 (403)
T PRK07333 43 DPRASAIAAAARRMLEAL--GVWDEIAPEAQPIT-DM-VITDSRTSDPVRPVFLTFEGE---VEPGEPFAHMVENRVLIN 115 (403)
T ss_pred CcceEEecHHHHHHHHHC--CChhhhhhhcCccc-EE-EEEeCCCCCCCccceEEeccc---ccCCCccEEEeEhHHHHH
Confidence 478999999999999999 99999988776544 34 4665322221 1222211 112444446899999999
Q ss_pred HHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.|.+.+ .+++++++++|++++++++++.+++++|+++++|+||+|||++|.+|..
T Consensus 116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~vr~~ 172 (403)
T PRK07333 116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSKLREL 172 (403)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChHHHHH
Confidence 999988 3789999999999999888999999999999999999999999999543
No 26
>PRK09126 hypothetical protein; Provisional
Probab=99.24 E-value=6.8e-11 Score=118.30 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=94.2
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
..|.++.|+++++++|++| |+++.+.+....+...+ .+.++. ......++.... . ...+.+.++|..|++.|+
T Consensus 45 ~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~--~-~~~~g~~~~~~~l~~~l~ 117 (392)
T PRK09126 45 FDGREIALTHASREILQRL--GAWDRIPEDEISPLRDA-KVLNGR-SPFALTFDARGR--G-ADALGYLVPNHLIRRAAY 117 (392)
T ss_pred CchhHHHhhHHHHHHHHHC--CChhhhccccCCccceE-EEEcCC-CCceeEeehhhc--C-CCcceEEEeHHHHHHHHH
Confidence 4688999999999999999 99999876654333233 355532 222233332111 0 111236799999999999
Q ss_pred hhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 89 HAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+.+ ++++++++++|++++++++++.|++++|++++||+||||||.+|.+|..
T Consensus 118 ~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~ 172 (392)
T PRK09126 118 EAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFSATRRQ 172 (392)
T ss_pred HHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCchhhHh
Confidence 887 4789999999999998888889999999999999999999999999543
No 27
>PRK06184 hypothetical protein; Provisional
Probab=99.21 E-value=2.1e-10 Score=118.67 Aligned_cols=127 Identities=18% Similarity=0.214 Sum_probs=94.4
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCccc---ccCCCeEEEEeHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAA---EKGLPVTRVISRMTLQ 84 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~---~~g~~~~~~i~r~~L~ 84 (412)
.+.+.++.|+|+++++|+++ |+++++.+.+.+.. .+ .+++ ..+. +...+...... ...++..+.++|..|+
T Consensus 39 ~~~~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le 112 (502)
T PRK06184 39 FPGSRGKGIQPRTQEVFDDL--GVLDRVVAAGGLYP-PM-RIYR-DDGS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTE 112 (502)
T ss_pred CcCccceeecHHHHHHHHHc--CcHHHHHhcCcccc-ce-eEEe-CCce-EEEeeccccccCCCCCCCCcceecCHHHHH
Confidence 34567899999999999999 99999998776443 23 3444 2333 22333211110 1122323689999999
Q ss_pred HHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEE---ccCcEEEeCEEEEecCcCchhHHH
Q 015167 85 QILAHAV--GNDIILNDSNVIDFMDHGDKVSVML---ENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 85 ~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~---~dG~~~~adllVgADG~~S~vr~~ 140 (412)
++|.+.+ .++++++++++++++++++++++++ .++++++||+||||||++|.||..
T Consensus 113 ~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~ 173 (502)
T PRK06184 113 RILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRSFVRKA 173 (502)
T ss_pred HHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCchHHHHh
Confidence 9999988 3689999999999999988998888 566789999999999999999544
No 28
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.21 E-value=5.6e-11 Score=106.95 Aligned_cols=70 Identities=27% Similarity=0.476 Sum_probs=63.5
Q ss_pred CCEEecCCCCCCCCceeEEeCCCcccccceEEEEECCEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEECC
Q 015167 299 EPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGS 378 (412)
Q Consensus 299 ~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~ 378 (412)
..++|||.+++ ++++++..|||+||.|.++++.++++|++|+||||||+. ++.+ ...+++||.|.||.
T Consensus 89 ~~~tigr~~~~-----~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~~ 156 (191)
T COG1716 89 PVTTIGRDPDN-----DIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLGG 156 (191)
T ss_pred ceEEeccCCCC-----CEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEECc
Confidence 47999996665 699999999999999999999999999999999999998 6653 68999999999999
Q ss_pred CC
Q 015167 379 DK 380 (412)
Q Consensus 379 ~~ 380 (412)
..
T Consensus 157 ~~ 158 (191)
T COG1716 157 TL 158 (191)
T ss_pred cc
Confidence 74
No 29
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.21 E-value=1.6e-10 Score=122.41 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=91.7
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCC---cEEEEEeC-CCcc-cccCCCeEEEEeHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISG---SWYIKFDT-FTPA-AEKGLPVTRVISRM 81 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g---~~l~~~~~-~~~~-~~~g~~~~~~i~r~ 81 (412)
..+.|.+++|+|+++++|+++ |+++.+.+.+.... .+ .+++. ++ ..+.+... .... .....|+ +.++|.
T Consensus 68 ~~~~grA~gl~prtleiL~~l--Gl~d~l~~~g~~~~-~~-~~~~~-~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~ 141 (634)
T PRK08294 68 RLELGQADGIACRTMEMFQAF--GFAERILKEAYWIN-ET-AFWKP-DPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQA 141 (634)
T ss_pred CCCCCeeeEEChHHHHHHHhc--cchHHHHhhccccc-ce-EEEcC-CCccccceeccccccccCCCCCCCcc-EeeCHH
Confidence 456789999999999999999 99999998776544 33 35542 22 12211110 0100 0113443 689999
Q ss_pred HHHHHHHhhc---C-CCEEEcCCeEEEEEEeCC---eEEEEEcc------C--cEEEeCEEEEecCcCchhHHH
Q 015167 82 TLQQILAHAV---G-NDIILNDSNVIDFMDHGD---KVSVMLEN------G--QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 82 ~L~~~L~~~l---~-~~~i~~~~~v~~i~~~~~---~v~v~~~d------G--~~~~adllVgADG~~S~vr~~ 140 (412)
.|+++|.+.+ + .+.+++++++++++++++ .|+|++.+ | ++++|||||||||+||.||..
T Consensus 142 ~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~ 215 (634)
T PRK08294 142 RVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKA 215 (634)
T ss_pred HHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHh
Confidence 9999999987 2 357899999999987643 48888863 5 579999999999999999654
No 30
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.20 E-value=1.8e-10 Score=115.47 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=89.7
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
.+++++ |.|+++++|+++ |+++++.+.+.+.. .+ .+++ +++ ...+++.... .+.. ...++|..|.+.|+
T Consensus 42 ~~~a~~-l~~~~~~~l~~l--Gl~~~l~~~~~~~~-~~-~~~~--~g~-~~~~~~~~~~--~~~~-~~~~~~~~l~~~Ll 110 (392)
T PRK08243 42 RIRAGV-LEQGTVDLLREA--GVGERMDREGLVHD-GI-ELRF--DGR-RHRIDLTELT--GGRA-VTVYGQTEVTRDLM 110 (392)
T ss_pred ccceeE-ECHhHHHHHHHc--CChHHHHhcCCccC-cE-EEEE--CCE-EEEecccccc--CCce-EEEeCcHHHHHHHH
Confidence 456665 999999999999 99999998776544 34 4555 344 3455543221 1222 35678999988888
Q ss_pred hhc--CCCEEEcCCeEEEEEE-eCCeEEEEE-ccCc--EEEeCEEEEecCcCchhHHH
Q 015167 89 HAV--GNDIILNDSNVIDFMD-HGDKVSVML-ENGQ--CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l--~~~~i~~~~~v~~i~~-~~~~v~v~~-~dG~--~~~adllVgADG~~S~vr~~ 140 (412)
+.+ .+++++++++++++++ +++.+.|++ .+|+ +++||+||||||+||.||..
T Consensus 111 ~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S~vR~~ 168 (392)
T PRK08243 111 AARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHGVSRAS 168 (392)
T ss_pred HHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCCchhhh
Confidence 775 4788999999999987 667788888 4774 68999999999999999544
No 31
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.20 E-value=2.4e-10 Score=113.80 Aligned_cols=123 Identities=25% Similarity=0.298 Sum_probs=94.2
Q ss_pred cccceeeCHHHHHHHHHcccChHHHHHh-cccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 10 YRGPIQIQSNALAALEAIDLDVAEEVMR-AGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 10 ~Gagi~l~~~~~~~L~~l~~Gl~~~l~~-~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
.|.++.|+++++++|+++ |+++++.+ .+.+.. .+ .+++. ++.....++..... ...+.+.++|..|.+.|.
T Consensus 42 ~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~---~~~~~~~i~r~~l~~~L~ 113 (385)
T TIGR01988 42 DNRVSALSAASIRLLEKL--GVWDKIEPDRAQPIR-DI-HVSDG-GSFGALHFDADEIG---LEALGYVVENRVLQQALW 113 (385)
T ss_pred CcceeecCHHHHHHHHHC--CchhhhhhhcCCCce-EE-EEEeC-CCCceEEechhhcC---CCccEEEEEcHHHHHHHH
Confidence 468899999999999999 99999987 554433 34 45663 33332333321110 112247899999999999
Q ss_pred hhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 89 HAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+.+ ++++++++++|++++.+++++.++++||+++++|+||+|||.+|.+|..
T Consensus 114 ~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S~vr~~ 168 (385)
T TIGR01988 114 ERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANSKVRQL 168 (385)
T ss_pred HHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCCHHHHH
Confidence 987 3489999999999998888899999999999999999999999999543
No 32
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.18 E-value=2.9e-10 Score=113.36 Aligned_cols=121 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred ccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECC-CCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHh
Q 015167 11 RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGI-SGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAH 89 (412)
Q Consensus 11 Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~ 89 (412)
+.++.|+|+++++|+++ |+++.+.+.+.+.. .+ .+.+.. .+.. .++..+.. ..+..+.++|..|.+.|.+
T Consensus 43 ~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~-~~-~~~~~~~~~~~--~~~~~~~~---~~~~~~~i~r~~l~~~L~~ 113 (382)
T TIGR01984 43 ARSLALSYGSKQILEKL--GLWPKLAPFATPIL-DI-HVSDQGHFGAT--HLRASEFG---LPALGYVVELADLGQALLS 113 (382)
T ss_pred CeeEeccHHHHHHHHHC--CChhhhHhhcCccc-eE-EEEcCCCCceE--EechhhcC---CCccEEEEEcHHHHHHHHH
Confidence 46799999999999999 99999987665433 33 344421 1222 22221110 1122368999999999999
Q ss_pred hc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 90 AV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 90 ~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+ ++++++++++|++++++++++++++++|++++||+||+|||++|.+|..
T Consensus 114 ~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S~vr~~ 167 (382)
T TIGR01984 114 RLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANSKVREL 167 (382)
T ss_pred HHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCChHHHHH
Confidence 87 3789999999999998888999999999999999999999999999433
No 33
>PRK06126 hypothetical protein; Provisional
Probab=99.18 E-value=3.2e-10 Score=118.49 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=96.6
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccc--cceeEEEECCCCcEEEEEeCCCccccc----------CCC-
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG--DRINGLVDGISGSWYIKFDTFTPAAEK----------GLP- 73 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~~~~----------g~~- 73 (412)
....+.++.|+++++++|++| |+++++.+.+.+.. ..+ .+....+|+.+.+++........ ..|
T Consensus 42 ~~~~~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (545)
T PRK06126 42 TAFNPKANTTSARSMEHFRRL--GIADEVRSAGLPVDYPTDI-AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPE 118 (545)
T ss_pred CCCCCccccCCHHHHHHHHhc--ChHHHHHhhcCCccccCCc-eEEecCCCceeeeeecCCcCcccccccccccccCCCC
Confidence 345678899999999999999 99999998775431 111 23443467766665543211100 111
Q ss_pred eEEEEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEcc---Cc--EEEeCEEEEecCcCchhHHH
Q 015167 74 VTRVISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVSVMLEN---GQ--CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 74 ~~~~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~d---G~--~~~adllVgADG~~S~vr~~ 140 (412)
..+.++|..|+++|.+.+ ++++++++++|++++++++++++++.+ |+ ++++|+||||||++|.||..
T Consensus 119 ~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~ 193 (545)
T PRK06126 119 LPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAVRRS 193 (545)
T ss_pred ccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHh
Confidence 126799999999999886 578999999999999998888888754 64 68999999999999999544
No 34
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.17 E-value=2.5e-10 Score=111.72 Aligned_cols=128 Identities=27% Similarity=0.343 Sum_probs=89.0
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhccccccc-ceeEEEECCCCcE------EEEEeCCCcccccCCCeEEEEe
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD-RINGLVDGISGSW------YIKFDTFTPAAEKGLPVTRVIS 79 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~-~~~~~~~~~~g~~------l~~~~~~~~~~~~g~~~~~~i~ 79 (412)
....+.|+.|.++++++|+++ |+++.+.+.+.+... .+ .+.....+.. ....... .....+..+.++
T Consensus 36 ~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 109 (356)
T PF01494_consen 36 PRPKGRGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRI-FFYDGISDSRIWVENPQIREDME---IDTKGPYGHVID 109 (356)
T ss_dssp CCCSSSSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEE-EEEEETTTSEEEEEEEEEEEECH---STSGSSCEEEEE
T ss_pred ccccccccccccccccccccc--cchhhhhhhcccccceee-EeecccCCccceeeecccceeee---ccccCCcchhhh
Confidence 345568999999999999999 999999987753321 11 2333111111 1111111 011223347899
Q ss_pred HHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCc-----EEEeCEEEEecCcCchhHHH
Q 015167 80 RMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQ-----CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 80 r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~-----~~~adllVgADG~~S~vr~~ 140 (412)
|..|++.|.+.+ .++++++++++++++++++++.+.+.++. +++||+||||||++|.||..
T Consensus 110 r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S~vR~~ 177 (356)
T PF01494_consen 110 RPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHSKVRKQ 177 (356)
T ss_dssp HHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-HHHHH
T ss_pred HHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCcccchhhh
Confidence 999999999997 25899999999999999998877765542 68999999999999999544
No 35
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.17 E-value=4e-11 Score=106.64 Aligned_cols=94 Identities=33% Similarity=0.559 Sum_probs=77.6
Q ss_pred CceEEEEcCCCCCccccEEeeccCCCCCEEecCCCCCCCCceeEEeCCCcccccceEEEEE-------CC------EEEE
Q 015167 273 GEWLLVPSGSETVVSQPIYLSRSDENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYK-------DG------AFYL 339 (412)
Q Consensus 273 ~~w~l~~~~~~~~~~~~i~l~~~~~~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~-------~~------~~~i 339 (412)
..|-|++...... +..+++.+ ...+++||.-.. +|+.|+++..|++||+|.+. +| ..||
T Consensus 172 kRwrLy~fk~~e~-l~~l~iHr---qs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkpYi 243 (293)
T KOG1882|consen 172 KRWRLYPFKCYEV-LPVLYIHR---QSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKPYI 243 (293)
T ss_pred hheecccccCCcc-cchheeee---eeeeecCceeee----eccCCCCccccccceeeeeeecccccCCCccceeeeeEE
Confidence 4799999888764 34555544 567999996544 68999999999999999763 22 3899
Q ss_pred EEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEECCC
Q 015167 340 IDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSD 379 (412)
Q Consensus 340 ~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~ 379 (412)
.||+|.||||||.. +|.+...++|..+|+|.||-.
T Consensus 244 iDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs 278 (293)
T KOG1882|consen 244 IDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFS 278 (293)
T ss_pred EecCCCCcceecCc-----ccCchheeeeecCceeeeccc
Confidence 99999999999999 888888999999999999953
No 36
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.16 E-value=4.3e-10 Score=112.62 Aligned_cols=121 Identities=20% Similarity=0.275 Sum_probs=87.7
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
++|+++ |+++++++|+++ |+++++.+.+.+.. .+ .++++ +. ...+++.... .+.+ .....+..|.+.|.
T Consensus 42 ~~~a~~-l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~-~~~~~--~~-~~~~~~~~~~--~~~~-~~~~~~~~l~~~L~ 110 (390)
T TIGR02360 42 RIRAGV-LEQGTVDLLREA--GVDERMDREGLVHE-GT-EIAFD--GQ-RFRIDLKALT--GGKT-VMVYGQTEVTRDLM 110 (390)
T ss_pred ceeEee-ECHHHHHHHHHC--CChHHHHhcCceec-ce-EEeeC--CE-EEEEeccccC--CCce-EEEeCHHHHHHHHH
Confidence 467777 999999999999 99999998775433 34 45552 22 3445544321 1222 13456889999998
Q ss_pred hhc--CCCEEEcCCeEEEEEE-eCCeEEEEEc-cCc--EEEeCEEEEecCcCchhHHH
Q 015167 89 HAV--GNDIILNDSNVIDFMD-HGDKVSVMLE-NGQ--CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l--~~~~i~~~~~v~~i~~-~~~~v~v~~~-dG~--~~~adllVgADG~~S~vr~~ 140 (412)
+.+ .++.++++++++.+.+ +++.+.|++. ||+ +++||+||||||+||.||..
T Consensus 111 ~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S~VR~~ 168 (390)
T TIGR02360 111 EAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHGVSRAS 168 (390)
T ss_pred HHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCchhhHHh
Confidence 887 3577889999888865 5567788886 886 68999999999999999544
No 37
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.16 E-value=5e-10 Score=112.14 Aligned_cols=121 Identities=20% Similarity=0.223 Sum_probs=92.3
Q ss_pred ceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc-
Q 015167 13 PIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV- 91 (412)
Q Consensus 13 gi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l- 91 (412)
.+.|+|+++++|+++ |+|+.+.+....+...+ .+++. .+.....++..... ..++.+.++|..|.+.|.+.+
T Consensus 52 ~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~---~~~~~~~v~~~~l~~~L~~~~~ 124 (392)
T PRK08773 52 VYAFAADNAALLDRL--GVWPAVRAARAQPYRRM-RVWDA-GGGGELGFDADTLG---REQLGWIVENDLLVDRLWAALH 124 (392)
T ss_pred EEEecHHHHHHHHHC--CchhhhhHhhCCcccEE-EEEeC-CCCceEEechhccC---CCcCEEEEEhHHHHHHHHHHHH
Confidence 378999999999999 99999986533333344 46663 33322345433211 112247899999999999987
Q ss_pred -CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 -GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 -~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+++++++++|++++.+++++++++++|+++++|+||+|||.+|.++..
T Consensus 125 ~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~ 174 (392)
T PRK08773 125 AAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAASTLREL 174 (392)
T ss_pred hCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCchHHHh
Confidence 4789999999999999888999999999999999999999999999433
No 38
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.15 E-value=6.1e-10 Score=111.43 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=90.2
Q ss_pred ceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc-
Q 015167 13 PIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV- 91 (412)
Q Consensus 13 gi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l- 91 (412)
.+.++++++++|+.| |+|+.+.+....+...+ ..+++..+.. .++..... . ..+.+.++|..|.+.|.+.+
T Consensus 52 ~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~--~-~~~g~~i~r~~l~~~L~~~~~ 123 (391)
T PRK08020 52 ISAISAASVALLKGL--GVWDAVQAMRSHPYRRL-ETWEWETAHV--VFDAAELK--L-PELGYMVENRVLQLALWQALE 123 (391)
T ss_pred EEeccHHHHHHHHHc--CChhhhhhhhCcccceE-EEEeCCCCeE--EecccccC--C-CccEEEEEcHHHHHHHHHHHH
Confidence 468999999999999 99999987543333333 3444334433 23322111 1 11236899999999999876
Q ss_pred --CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 --GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 --~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+++++++++++++++++++++.|++++|++++||+||+|||++|.+|..
T Consensus 124 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vR~~ 174 (391)
T PRK08020 124 AHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANSQVRQM 174 (391)
T ss_pred cCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCchhHHH
Confidence 5788999999999998888899999999999999999999999999544
No 39
>PRK08244 hypothetical protein; Provisional
Probab=99.14 E-value=6.2e-10 Score=114.95 Aligned_cols=122 Identities=17% Similarity=0.235 Sum_probs=92.1
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
.+.|.++.|+|+++++|+++ |+++++.+.+.+.. .+ .+.. ..+. +++.... ...++.+.++|..|+++|
T Consensus 38 ~~~~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~-~~-~~~~-~~~~----~~~~~~~--~~~~~~~~i~q~~le~~L 106 (493)
T PRK08244 38 VPYSKALTLHPRTLEILDMR--GLLERFLEKGRKLP-SG-HFAG-LDTR----LDFSALD--TSSNYTLFLPQAETEKVL 106 (493)
T ss_pred CCCcceeEecHHHHHHHHhc--CcHHHHHhhccccc-ce-EEec-cccc----CCcccCC--CCCCcEEEecHHHHHHHH
Confidence 45789999999999999999 99999988765443 22 2333 1211 1222111 123444689999999999
Q ss_pred Hhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc--cC-cEEEeCEEEEecCcCchhHHH
Q 015167 88 AHAV--GNDIILNDSNVIDFMDHGDKVSVMLE--NG-QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~--dG-~~~~adllVgADG~~S~vr~~ 140 (412)
.+.+ .++++++++++++++++++++++++. +| ++++||+||||||++|.||..
T Consensus 107 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~vR~~ 164 (493)
T PRK08244 107 EEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIVRKQ 164 (493)
T ss_pred HHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHHHHh
Confidence 9887 37889999999999999888888876 45 479999999999999999544
No 40
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.14 E-value=1.5e-10 Score=111.69 Aligned_cols=80 Identities=28% Similarity=0.402 Sum_probs=69.6
Q ss_pred CCCCEEecCCCCCCCCceeEEeCCC--cccccceEEEEECCEEEEEEcCCccceeeeCcCCceeecCCCCc-EEeCCCCE
Q 015167 297 ENEPYLIGSESQEDFPRTSIVIPSA--QVSKMHAHIRYKDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFP-ARFRPSNS 373 (412)
Q Consensus 297 ~~~~~~iGR~~~~~~~~~~~~i~~~--~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~-~~l~~gd~ 373 (412)
+....+|||.++| +..|+|+ .||+.||+|.+.+|.|||+|. |.||||||+. .+..|.. .+|+.||+
T Consensus 24 ~~~~g~IGrs~dc-----dW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~ 92 (430)
T COG3456 24 DRGGGVIGRSPDC-----DWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDE 92 (430)
T ss_pred hcCCcccccCCCC-----CccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCE
Confidence 4577899999986 4788654 899999999999999999997 7999999998 7777777 99999999
Q ss_pred EEECCCCceEEEEEEec
Q 015167 374 IQFGSDKKATFQVKVIR 390 (412)
Q Consensus 374 i~~G~~~~~~f~~~~~~ 390 (412)
|.||+. .|++.+.+
T Consensus 93 i~iG~y---~i~V~l~~ 106 (430)
T COG3456 93 ILIGRY---IIRVHLSR 106 (430)
T ss_pred EeeccE---EEEEEecc
Confidence 999998 68888764
No 41
>PRK07190 hypothetical protein; Provisional
Probab=99.11 E-value=1.4e-09 Score=111.82 Aligned_cols=128 Identities=13% Similarity=0.158 Sum_probs=94.7
Q ss_pred CcccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeC-CCcccccCCCeEEEEeHHHHHH
Q 015167 7 EGLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDT-FTPAAEKGLPVTRVISRMTLQQ 85 (412)
Q Consensus 7 ~~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~-~~~~~~~g~~~~~~i~r~~L~~ 85 (412)
....|.++.++++++++|+.+ |+++.+.+.+.+.. .+ .+++ .+..+..... .+.......++.+.+.|..+++
T Consensus 40 ~~~~gra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~-~~-~~~~--~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~ 113 (487)
T PRK07190 40 PLEVGRADALNARTLQLLELV--DLFDELYPLGKPCN-TS-SVWA--NGKFISRQSSWWEELEGCLHKHFLMLGQSYVEK 113 (487)
T ss_pred ccccccceEeCHHHHHHHHhc--ChHHHHHhhCccce-eE-EEec--CCceEeeccccCccCCcCCCCceEecCHHHHHH
Confidence 345788999999999999999 99999987665433 22 2333 3443322111 0000101123346889999999
Q ss_pred HHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+|.+.+ .+++++++++|++++++++++.+++.+|++++|++||||||.+|.||..
T Consensus 114 ~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S~vR~~ 170 (487)
T PRK07190 114 LLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRSFVRNH 170 (487)
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCHHHHHH
Confidence 999887 3789999999999999999999888899899999999999999999543
No 42
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.08 E-value=2.3e-09 Score=112.07 Aligned_cols=126 Identities=15% Similarity=0.198 Sum_probs=93.2
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
...+.++.|+++++++|+++ |+++++.+.+...... .++.. + ..+..++..... ....+..+.++|..|+++|
T Consensus 59 ~~~~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~--~~~~~-~-~~~~~~~~~~~~-~~~~~~~~~~~q~~le~~L 131 (547)
T PRK08132 59 STGSRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG--KVFLR-D-EEVYRFDLLPEP-GHRRPAFINLQQYYVEGYL 131 (547)
T ss_pred CCCCeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece--eEEeC-C-CeEEEecCCCCC-CCCCCceEecCHHHHHHHH
Confidence 45677899999999999999 9999998876543322 23331 2 344455443211 1123333678999999999
Q ss_pred Hhhc---CCCEEEcCCeEEEEEEeCCeEEEEEc--cCc-EEEeCEEEEecCcCchhHHH
Q 015167 88 AHAV---GNDIILNDSNVIDFMDHGDKVSVMLE--NGQ-CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~--dG~-~~~adllVgADG~~S~vr~~ 140 (412)
.+.+ +++++++++++++++++++++++++. +|+ ++++|+||||||++|.||..
T Consensus 132 ~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~vR~~ 190 (547)
T PRK08132 132 VERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSPLREM 190 (547)
T ss_pred HHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcHHHHH
Confidence 9987 46899999999999999888887764 454 69999999999999999544
No 43
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.07 E-value=2.4e-09 Score=107.14 Aligned_cols=122 Identities=19% Similarity=0.255 Sum_probs=91.2
Q ss_pred cccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCC-eEEEEeHHHHHHHHH
Q 015167 10 YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILA 88 (412)
Q Consensus 10 ~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~-~~~~i~r~~L~~~L~ 88 (412)
-+.++.|+++++++|+++ |+|+.+.+.+.+.. .+ .+.+. .......+...+ .+.+ +.+.++|.+|.+.|.
T Consensus 49 ~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~ 119 (395)
T PRK05732 49 DARAIALAAGTCQQLARL--GVWQALADCATPIT-HI-HVSDR-GHAGFVRLDAED----YGVPALGYVVELHDVGQRLF 119 (395)
T ss_pred CccceeccHHHHHHHHHC--CChhhhHhhcCCcc-EE-EEecC-CCCceEEeehhh----cCCCccEEEEEhHHHHHHHH
Confidence 457899999999999999 99999988765433 33 24431 111111222111 1222 136899999999999
Q ss_pred hhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 89 HAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 89 ~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+.+ +++++++++++++++++++++.|++++|.++++|+||+|||.+|.++..
T Consensus 120 ~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~ 174 (395)
T PRK05732 120 ALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSALREA 174 (395)
T ss_pred HHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChhhHHh
Confidence 876 4688999999999998888899999999899999999999999999433
No 44
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.05 E-value=1.4e-09 Score=108.80 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=90.8
Q ss_pred cceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEE----EEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 12 GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWY----IKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 12 agi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l----~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
.++.+.++++++|+++ |+|+.+.+.+.+.. .+ .+++. ++..+ ..++..+. ...++.+.++|..|.+.|
T Consensus 46 r~~~l~~~s~~~l~~l--gl~~~~~~~~~~~~-~~-~~~~~-~g~~~~~~~~~~~~~~~---~~~~~g~~i~~~~l~~~L 117 (388)
T PRK07494 46 RTTALLGPSIRFLERL--GLWARLAPHAAPLQ-SM-RIVDA-TGRLIRAPEVRFRAAEI---GEDAFGYNIPNWLLNRAL 117 (388)
T ss_pred chhhCcHHHHHHHHHh--CchhhhHhhcceee-EE-EEEeC-CCCCCCCceEEEcHHhc---CCCccEEEeEhHHHHHHH
Confidence 4567899999999999 99999987765443 44 46663 44322 12222111 112334789999999999
Q ss_pred Hhhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 88 AHAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 88 ~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+.+ +++. +++++|++++++++++.|++++|++++||+||+|||.+|.+|..
T Consensus 118 ~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~vr~~ 172 (388)
T PRK07494 118 EARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNSPVREA 172 (388)
T ss_pred HHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCchhHHh
Confidence 9987 3455 88999999999889999999999999999999999999999543
No 45
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.05 E-value=2.9e-10 Score=79.65 Aligned_cols=49 Identities=41% Similarity=0.773 Sum_probs=43.5
Q ss_pred EEecCCCCCCCCceeEEeCCCcccccceEEEEECCE-EEEEEcCCccceeeeCc
Q 015167 301 YLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGA-FYLIDLRSEHGTYITDN 353 (412)
Q Consensus 301 ~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~-~~i~Dl~S~nGt~vn~~ 353 (412)
++|||.+.. |++.++++.||+.||+|.++.+. |+|+|++|+||||||+.
T Consensus 1 ~~iGr~~~~----~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSED----CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCC----CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 379998832 46999999999999999998875 99999999999999986
No 46
>PRK06834 hypothetical protein; Provisional
Probab=99.00 E-value=4.2e-09 Score=108.40 Aligned_cols=116 Identities=21% Similarity=0.234 Sum_probs=88.0
Q ss_pred cceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc
Q 015167 12 GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV 91 (412)
Q Consensus 12 agi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l 91 (412)
.+++|+++++++|+++ |+++.+.+.+..... . .+ + ...++..... ..+++.+.+.|..|+++|.+.+
T Consensus 44 Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~-~-~~-----~--~~~~~~~~~~--~~~~~~~~i~q~~le~~L~~~l 110 (488)
T PRK06834 44 RAGGLHARTLEVLDQR--GIADRFLAQGQVAQV-T-GF-----A--ATRLDISDFP--TRHNYGLALWQNHIERILAEWV 110 (488)
T ss_pred ceeeECHHHHHHHHHc--CcHHHHHhcCCcccc-c-ee-----e--eEecccccCC--CCCCccccccHHHHHHHHHHHH
Confidence 3678999999999999 999999876532211 0 11 1 1122322211 1223346899999999999987
Q ss_pred --CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 --GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 --~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.++++++++++++++++++++.+++.+|++++||+||+|||++|.||..
T Consensus 111 ~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~ 161 (488)
T PRK06834 111 GELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKA 161 (488)
T ss_pred HhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhh
Confidence 3689999999999999999999999999899999999999999999544
No 47
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.99 E-value=1.1e-08 Score=102.24 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=86.9
Q ss_pred eeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc--
Q 015167 14 IQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV-- 91 (412)
Q Consensus 14 i~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l-- 91 (412)
+.++++++++|+++ |+++++......+...+ .+.....++. .+.... ...... .+.++|..|.++|.+.+
T Consensus 52 ~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~~-~~~i~~~~l~~~L~~~~~~ 123 (388)
T PRK07608 52 YAISPSSQAFLERL--GVWQALDAARLAPVYDM-RVFGDAHARL--HFSAYQ--AGVPQL-AWIVESSLIERALWAALRF 123 (388)
T ss_pred EeecHHHHHHHHHc--CchhhhhhhcCCcceEE-EEEECCCcee--Eeeccc--cCCCCC-EEEEEhHHHHHHHHHHHHh
Confidence 89999999999999 99999865443333344 3554322222 222111 111112 36899999999999987
Q ss_pred -CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 -GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 -~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
++++++ ++++++++++++++.|++.+|++++||+||+|||++|.+|..
T Consensus 124 ~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~vr~~ 172 (388)
T PRK07608 124 QPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSWVRSQ 172 (388)
T ss_pred CCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCchHHHh
Confidence 347777 999999998888899999999899999999999999999544
No 48
>PRK06185 hypothetical protein; Provisional
Probab=98.99 E-value=7.4e-09 Score=104.15 Aligned_cols=123 Identities=16% Similarity=0.212 Sum_probs=89.2
Q ss_pred ccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhh
Q 015167 11 RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHA 90 (412)
Q Consensus 11 Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~ 90 (412)
..+.+|+++++++|+++ |+|+.+.+........+ .+++ .+..+...++.... .+.++.+.++|..|.+.|.+.
T Consensus 45 ~r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~--~~~~~~~~v~~~~l~~~L~~~ 117 (407)
T PRK06185 45 FRGDTVHPSTLELMDEL--GLLERFLELPHQKVRTL-RFEI--GGRTVTLADFSRLP--TPYPYIAMMPQWDFLDFLAEE 117 (407)
T ss_pred ccCceeChhHHHHHHHc--CChhHHhhcccceeeeE-EEEE--CCeEEEecchhhcC--CCCCcEEEeehHHHHHHHHHH
Confidence 45789999999999999 99999987544333344 3554 33333333332211 123444689999999999987
Q ss_pred c---CCCEEEcCCeEEEEEEeCCeE---EEEEccCc-EEEeCEEEEecCcCchhHHH
Q 015167 91 V---GNDIILNDSNVIDFMDHGDKV---SVMLENGQ-CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 91 l---~~~~i~~~~~v~~i~~~~~~v---~v~~~dG~-~~~adllVgADG~~S~vr~~ 140 (412)
+ +++++++++++++++.+++++ .+...+|+ +++||+||+|||.+|.+|..
T Consensus 118 ~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~vr~~ 174 (407)
T PRK06185 118 ASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSRVRAL 174 (407)
T ss_pred HhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchHHHHH
Confidence 6 578999999999999887765 34455675 79999999999999999544
No 49
>PRK06996 hypothetical protein; Provisional
Probab=98.97 E-value=5.9e-09 Score=104.73 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=84.7
Q ss_pred cceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEEC-CCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhh
Q 015167 12 GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDG-ISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHA 90 (412)
Q Consensus 12 agi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~-~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~ 90 (412)
.+++|+++++++|+++ |+|+.. ..+.. .+ .+.+. ..|... ++..+... .++.+.++|..|.++|.+.
T Consensus 57 r~~~l~~~~~~~L~~l--g~~~~~---~~~~~-~~-~~~~~~~~g~~~--~~~~~~~~---~~~g~~v~r~~l~~~L~~~ 124 (398)
T PRK06996 57 RAIALSHGSRVLLETL--GAWPAD---ATPIE-HI-HVSQRGHFGRTL--IDRDDHDV---PALGYVVRYGSLVAALARA 124 (398)
T ss_pred eEEEecHHHHHHHHhC--CCchhc---CCccc-EE-EEecCCCCceEE--ecccccCC---CcCEEEEEhHHHHHHHHHH
Confidence 4899999999999999 999862 22222 33 34542 233433 23222111 1124799999999999999
Q ss_pred c--CCCEEEcCCeEEEEEEeCCeEEEEEccC---cEEEeCEEEEecCc-CchhH
Q 015167 91 V--GNDIILNDSNVIDFMDHGDKVSVMLENG---QCYAGDVLVGADGI-WSKMN 138 (412)
Q Consensus 91 l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG---~~~~adllVgADG~-~S~vr 138 (412)
+ .++++++++++++++++++++++++.+| ++++||+||||||. +|.+|
T Consensus 125 ~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r 178 (398)
T PRK06996 125 VRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQK 178 (398)
T ss_pred HHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHH
Confidence 8 3578999999999999999999999865 58999999999997 46664
No 50
>PLN02985 squalene monooxygenase
Probab=98.94 E-value=8.3e-09 Score=106.72 Aligned_cols=125 Identities=13% Similarity=0.064 Sum_probs=84.9
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEE-EEEeCCCcccccC-CCeEEEEeHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWY-IKFDTFTPAAEKG-LPVTRVISRMTLQQ 85 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l-~~~~~~~~~~~~g-~~~~~~i~r~~L~~ 85 (412)
.+.+.|+.|+|+++++|++| |+++.+.+........+ .+++ +|+.+ ..++... ...+ .+..+.++|.+|.+
T Consensus 79 ~~~~~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~~~~-~v~~--~g~~~~~~~~~~~--~~~~~~~~g~~i~r~~l~~ 151 (514)
T PLN02985 79 PERMMGEFMQPGGRFMLSKL--GLEDCLEGIDAQKATGM-AVYK--DGKEAVAPFPVDN--NNFPYEPSARSFHNGRFVQ 151 (514)
T ss_pred CccccccccCchHHHHHHHc--CCcchhhhccCcccccE-EEEE--CCEEEEEeCCCCC--cCCCcccceeeeecHHHHH
Confidence 45678999999999999999 99999887543333334 3444 45432 3333211 1111 12236899999999
Q ss_pred HHHhhc---CCCEEEcCCeEEEEEEeCCe---EEEEEccCcE--EEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV---GNDIILNDSNVIDFMDHGDK---VSVMLENGQC--YAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l---~~~~i~~~~~v~~i~~~~~~---v~v~~~dG~~--~~adllVgADG~~S~vr~~ 140 (412)
.|.+.+ ++++++++ +++++.++++. |++...+|++ ++||+||||||++|.+|..
T Consensus 152 ~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S~vR~~ 213 (514)
T PLN02985 152 RLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYSNLRRS 213 (514)
T ss_pred HHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCchHHHHH
Confidence 999987 57888766 57776655543 4444457764 5799999999999999544
No 51
>PTZ00367 squalene epoxidase; Provisional
Probab=98.87 E-value=2e-08 Score=104.74 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=83.5
Q ss_pred ccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhh
Q 015167 11 RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHA 90 (412)
Q Consensus 11 Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~ 90 (412)
..|+.|+|+++++|++| |+++.+.+.+.+.. .+ .+++ .+|+.+ .+++.. +.. .+.++|..+.+.|.+.
T Consensus 73 ~~G~~L~p~g~~~L~~L--GL~d~l~~i~~~~~-~~-~v~~-~~G~~~-~i~~~~-----~~~-g~~~~rg~~~~~Lr~~ 140 (567)
T PTZ00367 73 IVGELLQPGGVNALKEL--GMEECAEGIGMPCF-GY-VVFD-HKGKQV-KLPYGA-----GAS-GVSFHFGDFVQNLRSH 140 (567)
T ss_pred hhhhhcCHHHHHHHHHC--CChhhHhhcCccee-ee-EEEE-CCCCEE-EecCCC-----CCc-eeEeEHHHHHHHHHHH
Confidence 35678999999999999 99999987776543 34 4666 356543 333321 112 2678999998888876
Q ss_pred c-----CCCEEEcCCeEEEEEEeCC-------eEEEEEcc-----------------------CcEEEeCEEEEecCcCc
Q 015167 91 V-----GNDIILNDSNVIDFMDHGD-------KVSVMLEN-----------------------GQCYAGDVLVGADGIWS 135 (412)
Q Consensus 91 l-----~~~~i~~~~~v~~i~~~~~-------~v~v~~~d-----------------------G~~~~adllVgADG~~S 135 (412)
+ ++++++. .+++++..+++ +|++++.+ |++++|||||||||++|
T Consensus 141 a~~~~~~~V~v~~-~~v~~l~~~~~~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S 219 (567)
T PTZ00367 141 VFHNCQDNVTMLE-GTVNSLLEEGPGFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMS 219 (567)
T ss_pred HHhhcCCCcEEEE-eEEEEeccccCccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCEEEECCCcch
Confidence 5 5777764 57888754432 46666555 56899999999999999
Q ss_pred hhHHH
Q 015167 136 KMNLL 140 (412)
Q Consensus 136 ~vr~~ 140 (412)
++|..
T Consensus 220 ~vR~~ 224 (567)
T PTZ00367 220 KFKSR 224 (567)
T ss_pred HHHHH
Confidence 99544
No 52
>PRK11445 putative oxidoreductase; Provisional
Probab=98.75 E-value=9.5e-08 Score=94.36 Aligned_cols=114 Identities=15% Similarity=0.067 Sum_probs=79.1
Q ss_pred cceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcc-cccCCCeEEEEeHHHHHHHHHhh
Q 015167 12 GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAHA 90 (412)
Q Consensus 12 agi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~g~~~~~~i~r~~L~~~L~~~ 90 (412)
+|..|+|+++++|+++ |++..... +.+ .....+..++..... ...+.++ +.++|..|.+.|.+.
T Consensus 44 ~g~~l~~~~~~~L~~l--gl~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~R~~~~~~L~~~ 108 (351)
T PRK11445 44 CGGLLAPDAQKSFAKD--GLTLPKDV-----------IAN-PQIFAVKTIDLANSLTRNYQRSY-INIDRHKFDLWLKSL 108 (351)
T ss_pred CcCccCHHHHHHHHHc--CCCCCcce-----------eec-cccceeeEecccccchhhcCCCc-ccccHHHHHHHHHHH
Confidence 6788999999999999 77521110 001 000011122222111 1123343 679999999999987
Q ss_pred c-CCCEEEcCCeEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEecCcCchh-HHH
Q 015167 91 V-GNDIILNDSNVIDFMDHGDKVSVML-ENGQ--CYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 91 l-~~~~i~~~~~v~~i~~~~~~v~v~~-~dG~--~~~adllVgADG~~S~v-r~~ 140 (412)
+ .++++++++++++++++++++.|++ ++|+ +++||+||+|||++|.+ +.+
T Consensus 109 ~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 109 IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 6 4789999999999999888888886 5675 68999999999999999 444
No 53
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=98.71 E-value=5.6e-08 Score=94.11 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=90.2
Q ss_pred eeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHh-hc-
Q 015167 14 IQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAH-AV- 91 (412)
Q Consensus 14 i~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~-~l- 91 (412)
..++|++...++.+ |+|+.+..........| .++|+-+.. .+.++.... +.+..+++++..++..|+. .+
T Consensus 91 ss~s~~s~~~fk~~--~awd~i~~~R~~~~~~~-~v~Ds~s~a-~I~~~~d~~----~~d~a~iien~nIq~sL~~s~~~ 162 (481)
T KOG3855|consen 91 SSISPASISLFKSI--GAWDHIFHDRYQKFSRM-LVWDSCSAA-LILFDHDNV----GIDMAFIIENDNIQCSLYNSQLD 162 (481)
T ss_pred ecCCcchHHHHHhc--CHHHHhhhhccccccce-eeecccchh-hhhhccccc----cccceeeeehhHHHHHHHHHHHh
Confidence 46889999999999 99999999888777777 477743332 334444332 2232368999999999985 32
Q ss_pred ---CCCEEEcCCeEEEEEEe------C--CeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 ---GNDIILNDSNVIDFMDH------G--DKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 ---~~~~i~~~~~v~~i~~~------~--~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+++++....++..+... + ....+++.||..+..||||||||.||.||.+
T Consensus 163 s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~ 222 (481)
T KOG3855|consen 163 SESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKA 222 (481)
T ss_pred hhcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccchhhhh
Confidence 57888888888877642 2 2467889999999999999999999999655
No 54
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.66 E-value=2.7e-07 Score=100.08 Aligned_cols=106 Identities=19% Similarity=0.132 Sum_probs=72.9
Q ss_pred cccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHH
Q 015167 8 GLYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQIL 87 (412)
Q Consensus 8 ~~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L 87 (412)
..+|+||.|++++++.|+.+++-+.+.+........ .+ .+.. .|..+. ..|.++ ..++|.+|.++|
T Consensus 38 ~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~-~~-~~~~--~g~~~~---------~~g~~~-~~i~R~~L~~~L 103 (765)
T PRK08255 38 DTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWD-DI-DVHF--KGRRIR---------SGGHGF-AGIGRKRLLNIL 103 (765)
T ss_pred cccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCC-ce-EEEE--CCEEEE---------ECCeeE-ecCCHHHHHHHH
Confidence 458999999999999999984324455544322221 22 2332 233211 124443 579999999999
Q ss_pred Hhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 88 AHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 88 ~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
.+.+ .+++++++++++++++. ..++|+||||||++|.||.
T Consensus 104 ~e~a~~~GV~i~~g~~v~~i~~~------------~~~~D~VVgADG~~S~vR~ 145 (765)
T PRK08255 104 QARCEELGVKLVFETEVPDDQAL------------AADADLVIASDGLNSRIRT 145 (765)
T ss_pred HHHHHHcCCEEEeCCccCchhhh------------hcCCCEEEEcCCCCHHHHH
Confidence 9988 37899999998776431 1578999999999999954
No 55
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.61 E-value=1.8e-08 Score=102.72 Aligned_cols=73 Identities=29% Similarity=0.574 Sum_probs=65.3
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEEEC-----------CEEEEEEcCCccceeeeCcCCceeecCCCCcE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKD-----------GAFYLIDLRSEHGTYITDNEGRRYRVSPNFPA 366 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~-----------~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~ 366 (412)
...++|||... ||+++.++.|||.||.+.|.. -.|+|.|||||+|||+|.. ++.+....
T Consensus 176 ~~~~~fgr~~~-----cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~-----rvppk~yi 245 (793)
T KOG1881|consen 176 AAACLFGRLGG-----CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKD-----RVPPKVYI 245 (793)
T ss_pred ceeEEecccCC-----CccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccc-----cCCCcchh
Confidence 46799999985 579999999999999998843 1399999999999999999 99999999
Q ss_pred EeCCCCEEEECCCC
Q 015167 367 RFRPSNSIQFGSDK 380 (412)
Q Consensus 367 ~l~~gd~i~~G~~~ 380 (412)
+++.|++++||...
T Consensus 246 r~~Vg~v~~fggsT 259 (793)
T KOG1881|consen 246 RDRVGHVARFGGST 259 (793)
T ss_pred hhhHHHHHHhcCce
Confidence 99999999999973
No 56
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.39 E-value=2.5e-07 Score=85.34 Aligned_cols=75 Identities=32% Similarity=0.665 Sum_probs=67.9
Q ss_pred CCCCEEecCCCCCCCCceeEEeCCCcccccceEEEEEC--CEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEE
Q 015167 297 ENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKD--GAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSI 374 (412)
Q Consensus 297 ~~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~--~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i 374 (412)
+++.+++||..+. ||.+|+...+||.||.+.+.. ..++|.|++|++|||+... +|.+..++++..|..+
T Consensus 36 dkr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgtf~g~~-----rL~~~~p~~l~i~~~~ 106 (337)
T KOG1880|consen 36 DKRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGTFLGNE-----RLEPHKPVQLEIGSTF 106 (337)
T ss_pred hhhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcceeeeee-----eeccCCCccccCCceE
Confidence 4678999999887 899999999999999997754 5699999999999999887 8999999999999999
Q ss_pred EECCCC
Q 015167 375 QFGSDK 380 (412)
Q Consensus 375 ~~G~~~ 380 (412)
.||...
T Consensus 107 ~fgasT 112 (337)
T KOG1880|consen 107 HFGAST 112 (337)
T ss_pred EEeccc
Confidence 999864
No 57
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.97 E-value=0.00011 Score=70.10 Aligned_cols=113 Identities=19% Similarity=0.181 Sum_probs=78.8
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
..+.+..+.+++++.|..+ +.. .+.. .. .. .+.. ..++.+ ..+.. . +..+.++|..|.+.|.
T Consensus 37 ~~~~~~~~~~~~~~~l~~~--~~~-~~~~----~~-~~-~~~~-~~~~~~-~~~~~------~-~~~~~i~r~~l~~~l~ 98 (295)
T TIGR02032 37 YKPCGGALSPRVLEELDLP--LEL-IVNL----VR-GA-RFFS-PNGDSV-EIPIE------T-ELAYVIDRDAFDEQLA 98 (295)
T ss_pred cccccCccCHhHHHHhcCC--chh-hhhh----ee-eE-EEEc-CCCcEE-EeccC------C-CcEEEEEHHHHHHHHH
Confidence 3567788899988888776 431 1111 11 11 2343 344332 22211 1 2236899999999999
Q ss_pred hhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC-cEEEeCEEEEecCcCchhHH
Q 015167 89 HAV--GNDIILNDSNVIDFMDHGDKVSVMLENG-QCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 89 ~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG-~~~~adllVgADG~~S~vr~ 139 (412)
+.+ .++++++++++++++.+++++.+.+.++ .++++|+||+|||.+|.++.
T Consensus 99 ~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~~~ 152 (295)
T TIGR02032 99 ERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIVAK 152 (295)
T ss_pred HHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHHHH
Confidence 988 3688999999999998888888877654 57999999999999999843
No 58
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.96 E-value=7.1e-05 Score=74.94 Aligned_cols=103 Identities=16% Similarity=0.246 Sum_probs=69.5
Q ss_pred HHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc--CCCEEEcC
Q 015167 22 AALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV--GNDIILND 99 (412)
Q Consensus 22 ~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l--~~~~i~~~ 99 (412)
++|+.+ |+.+++..... . .+ .+.. .++..+ ..+.. .+..+...++|..|.+.|.+.+ .+++++.+
T Consensus 46 ~~l~~l--~i~~~~~~~~~--~-~~-~~~~-~~~~~~-~~~~~-----~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~ 112 (388)
T TIGR02023 46 CLIEEF--DIPDSLIDRRV--T-QM-RMIS-PSRVPI-KVTIP-----SEDGYVGMVRREVFDSYLRERAQKAGAELIHG 112 (388)
T ss_pred hhhhhc--CCchHHHhhhc--c-ee-EEEc-CCCcee-eeccC-----CCCCceEeeeHHHHHHHHHHHHHhCCCEEEee
Confidence 567888 77777665322 2 23 3444 244322 22221 1122223699999999999987 46777655
Q ss_pred CeEEEEEEeCCeEEEEEcc------C--cEEEeCEEEEecCcCchhH
Q 015167 100 SNVIDFMDHGDKVSVMLEN------G--QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 100 ~~v~~i~~~~~~v~v~~~d------G--~~~~adllVgADG~~S~vr 138 (412)
+++++..+++++.+++.+ | .+++||+||||||.+|.++
T Consensus 113 -~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~ 158 (388)
T TIGR02023 113 -LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVA 158 (388)
T ss_pred -EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHHH
Confidence 699998888888888764 2 3699999999999999994
No 59
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.94 E-value=8.8e-05 Score=75.69 Aligned_cols=114 Identities=15% Similarity=0.237 Sum_probs=71.2
Q ss_pred ccccceeeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcEEEEEeCCCcccccCCCeEEEEeHHHHHHHHH
Q 015167 9 LYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILA 88 (412)
Q Consensus 9 ~~Gagi~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~ 88 (412)
+.|.+|. .++|+++ |+++.+..... . .+ .+.. ..+.. ..++ ... ...++..+++|..|.+.|.
T Consensus 77 ~cgg~i~-----~~~l~~l--gl~~~~~~~~i--~-~~-~~~~-p~~~~-v~~~--~~~--~~~~~~~~v~R~~~d~~L~ 139 (450)
T PLN00093 77 PCGGAIP-----LCMVGEF--DLPLDIIDRKV--T-KM-KMIS-PSNVA-VDIG--KTL--KPHEYIGMVRREVLDSFLR 139 (450)
T ss_pred Ccccccc-----HhHHhhh--cCcHHHHHHHh--h-hh-eEec-CCceE-EEec--ccC--CCCCeEEEecHHHHHHHHH
Confidence 4566653 4678888 77776655322 1 22 3443 23322 2222 111 1123335799999999999
Q ss_pred hhc--CCCEEEcCCeEEEEEEe---CCeEEEEEcc-------C--cEEEeCEEEEecCcCchh-HHH
Q 015167 89 HAV--GNDIILNDSNVIDFMDH---GDKVSVMLEN-------G--QCYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 89 ~~l--~~~~i~~~~~v~~i~~~---~~~v~v~~~d-------G--~~~~adllVgADG~~S~v-r~~ 140 (412)
+.+ .+++++.+ ++++++.. ++.+.|++.+ | .+++||+||||||++|.| +.+
T Consensus 140 ~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 140 ERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred HHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 987 46778765 57777642 2456676643 3 479999999999999999 444
No 60
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.64 E-value=0.00021 Score=72.54 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=55.9
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh-HHH
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v-r~~ 140 (412)
+.+.|..|.+.|.+.+ .+++++++++|++++.+++.+.....+|.+++||+||+|||.+|.+ +.+
T Consensus 103 ~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~s~l~~~l 170 (428)
T PRK10157 103 YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKL 170 (428)
T ss_pred eeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCCHHHHHHc
Confidence 6899999999999987 4789999999999988777765555678889999999999999988 443
No 61
>PLN02463 lycopene beta cyclase
Probab=97.58 E-value=0.00024 Score=72.30 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=54.4
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
..|+|..|.+.|.+.+ .+++++ ..+|+++++.++++.|++++|.+++||+||+|||.+|++
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCc
Confidence 5789999999999987 367775 578999999888899999999999999999999999987
No 62
>PRK10015 oxidoreductase; Provisional
Probab=97.51 E-value=0.00033 Score=71.15 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=54.9
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh-HHH
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v-r~~ 140 (412)
+.+.|..|.+.|.+.+ .+++++++++|+++..+++++.....++.+++||+||+|||.+|.+ +.+
T Consensus 103 ~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~s~v~~~l 170 (429)
T PRK10015 103 YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSL 170 (429)
T ss_pred eEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcchhhhccc
Confidence 7899999999998887 4789999999999987777766444566789999999999999999 543
No 63
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.46 E-value=0.0012 Score=66.39 Aligned_cols=64 Identities=20% Similarity=0.314 Sum_probs=47.9
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEE---eCCeEEEEEc--c-----C--cEEEeCEEEEecCcCchh-HHH
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMD---HGDKVSVMLE--N-----G--QCYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~---~~~~v~v~~~--d-----G--~~~~adllVgADG~~S~v-r~~ 140 (412)
+.++|..|.+.|.+.+ .+++++.++ +++++. .++.+.|++. + | .+++|++||||||++|.| +.+
T Consensus 88 ~~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 88 GMLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred eeeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 4799999999999987 478888775 777753 2344555542 2 3 368999999999999999 444
No 64
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.00036 Score=68.11 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=63.8
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEEE---------------CCEEEEEEcCCccceeeeCcCCceeecCC
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYK---------------DGAFYLIDLRSEHGTYITDNEGRRYRVSP 362 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~---------------~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~ 362 (412)
...+++||.+.+ |..+....+|..|-.|..- .+.+|+.|. |+||||||.. .+..
T Consensus 63 nd~f~fGR~~~~-----d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e-----~i~k 131 (475)
T KOG0615|consen 63 NDEFTFGRGDSC-----DAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDE-----MIGK 131 (475)
T ss_pred cceEEecCCCcc-----cccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHh-----Hhhc
Confidence 467999999765 4666666677777666321 246999996 9999999998 8999
Q ss_pred CCcEEeCCCCEEEECCCCceEEEEEEe
Q 015167 363 NFPARFRPSNSIQFGSDKKATFQVKVI 389 (412)
Q Consensus 363 ~~~~~l~~gd~i~~G~~~~~~f~~~~~ 389 (412)
+....|+.||+|.||-+....|.+..+
T Consensus 132 ~~~r~lkN~dei~is~p~~~~~v~~~~ 158 (475)
T KOG0615|consen 132 GLSRILKNGDEISISIPALKIFVFEDL 158 (475)
T ss_pred cccccccCCCEEEeccchhheeeeecc
Confidence 999999999999999976556777665
No 65
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.17 E-value=0.0016 Score=65.45 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=56.3
Q ss_pred EEEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc-cCcEEEeCEEEEecCcCchh-HHH
Q 015167 75 TRVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLE-NGQCYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 75 ~~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~-dG~~~~adllVgADG~~S~v-r~~ 140 (412)
.++++|..|.+.|.+.+ .+..++.+++++++..+++++.+... ++.+++|++||+|||.+|.+ +.+
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~~~l 158 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALARKL 158 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHHHHh
Confidence 47999999999999877 47889999999999998887665544 44789999999999999999 555
No 66
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.13 E-value=0.002 Score=64.19 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=49.9
Q ss_pred CCCeEEEEeHHHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 71 GLPVTRVISRMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 71 g~~~~~~i~r~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
+.+| ..|+|.+|.+.|.+.++.. ++++.+|+++ ++++|++ +||++++||+||+|||.+|..
T Consensus 80 ~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~VI~A~G~~s~~ 140 (370)
T TIGR01789 80 KTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSVIDCRGFKPSA 140 (370)
T ss_pred CCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEEEECCCCCCCc
Confidence 4564 7999999999999988543 7779999988 3455544 799999999999999999854
No 67
>PLN02697 lycopene epsilon cyclase
Probab=96.94 E-value=0.0026 Score=66.11 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=50.6
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcCch
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~S~ 136 (412)
..|+|..|.+.|.+.+ .++++ ++++|++++++++++. +++.+|.+++|++||+|||.+|.
T Consensus 187 g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 187 GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 4699999999999987 36766 6789999988777655 46678889999999999999994
No 68
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=96.88 E-value=0.0039 Score=62.22 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=51.9
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEe-CCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDH-GDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~-~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
..++|..|.+.|.+.+ .+++++ ..++++++.+ ++.+.|++.+|.+++|++||+|||.+|.++
T Consensus 80 ~~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s~~~ 144 (388)
T TIGR01790 80 GSVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGPLVQ 144 (388)
T ss_pred eEEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCchhcc
Confidence 5799999999999987 256665 6688888877 566788888998999999999999999663
No 69
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=96.85 E-value=0.0047 Score=61.60 Aligned_cols=65 Identities=26% Similarity=0.371 Sum_probs=56.7
Q ss_pred CCeEEEEeHHHHHHHHHhhcC-CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 72 LPVTRVISRMTLQQILAHAVG-NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 72 ~~~~~~i~r~~L~~~L~~~l~-~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.+| ..|++.+|.+.|.+.+. +..++.+.+|++++.+++.+.++++||++++|++||.|+|..|..
T Consensus 79 ~~Y-~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~~ 144 (374)
T PF05834_consen 79 YPY-CMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSPK 144 (374)
T ss_pred cce-EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccccc
Confidence 343 69999999999999984 445677999999999988888999999999999999999987765
No 70
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=96.68 E-value=0.018 Score=58.85 Aligned_cols=127 Identities=15% Similarity=0.142 Sum_probs=76.7
Q ss_pred cCcccccceeeCHHHHHHHHHcccChHHH--HHhcccccccceeEEEECCC-CcEEEEEeCCC-----------------
Q 015167 6 GEGLYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGDRINGLVDGIS-GSWYIKFDTFT----------------- 65 (412)
Q Consensus 6 ~~~~~Gagi~l~~~~~~~L~~l~~Gl~~~--l~~~~~~~~~~~~~~~~~~~-g~~l~~~~~~~----------------- 65 (412)
..+.+|-|=+..|....+++.| |+.+. +.+........+ .+.+|.. +.... .++..
T Consensus 35 ~~~~~~vGe~~~p~~~~~~~~l--gi~e~~~~~~~~~~~k~g~-~f~~w~~~~~~~~-~~f~~~~~~~~~~~~~~~wl~~ 110 (454)
T PF04820_consen 35 DIPRIGVGESTLPSLRPFLRRL--GIDEADFMRACDATFKLGI-RFVNWGERGESYF-HPFGSYGPPIDGVDFHHYWLRL 110 (454)
T ss_dssp SS---SSEEE--THHHHCHHHH--T--HHHHCHHCT-EEESEE-EEESSSSCCSEEE-EESS---TEETTEEHHHHHHHH
T ss_pred CCCCCCccccchHHHHHHHHHc--CCChHHHHHHhCCeEeccE-EeeecCCCCCceE-eeccccCCCCCCccHHHHHHHH
Confidence 3467777888999999999999 89877 555543333333 4555432 21111 11111
Q ss_pred -----------------------c---ccc--cCCCeEEEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-E-E
Q 015167 66 -----------------------P---AAE--KGLPVTRVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-V-S 113 (412)
Q Consensus 66 -----------------------~---~~~--~g~~~~~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v-~ 113 (412)
. ... ...++.|.++|..+.+.|.+.+ .+++++.+ +|+++..++++ + .
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~ 189 (454)
T PF04820_consen 111 RAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITA 189 (454)
T ss_dssp HHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEE
T ss_pred hhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEE
Confidence 0 000 0233468999999999999987 57888777 58888777665 3 5
Q ss_pred EEEccCcEEEeCEEEEecCcCchh
Q 015167 114 VMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 114 v~~~dG~~~~adllVgADG~~S~v 137 (412)
|+.++|.+++||++|-|.|.+|.+
T Consensus 190 v~~~~g~~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 190 VRLDDGRTIEADFFIDASGRRSLL 213 (454)
T ss_dssp EEETTSEEEEESEEEE-SGGG-CC
T ss_pred EEECCCCEEEEeEEEECCCccchh
Confidence 888899999999999999999988
No 71
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=96.55 E-value=0.0079 Score=58.62 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=75.5
Q ss_pred eeCHHHHHHHHHcccChHHHHHhcccccccceeEEEECCCCcE-EEEEeCCCcccccCCCeEEEEeHHHHHHHHHhhc--
Q 015167 15 QIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLVDGISGSW-YIKFDTFTPAAEKGLPVTRVISRMTLQQILAHAV-- 91 (412)
Q Consensus 15 ~l~~~~~~~L~~l~~Gl~~~l~~~~~~~~~~~~~~~~~~~g~~-l~~~~~~~~~~~~g~~~~~~i~r~~L~~~L~~~l-- 91 (412)
.++|.+..+|.+| |+.|-++..-......+ .++. +|+. -..++..+...+. .+...|+..+.+-|.+.+
T Consensus 88 llQPGG~~~L~~L--Gl~Dcve~IDAQ~v~Gy-~ifk--~gk~v~~pyP~~~f~~d~---~GrsFhnGRFvq~lR~ka~s 159 (509)
T KOG1298|consen 88 LLQPGGYLALSKL--GLEDCVEGIDAQRVTGY-AIFK--DGKEVDLPYPLKNFPSDP---SGRSFHNGRFVQRLRKKAAS 159 (509)
T ss_pred hcCcchhHHHHHh--CHHHHhhcccceEeeee-EEEe--CCceeeccCCCcCCCCCc---ccceeeccHHHHHHHHHHhc
Confidence 4789999999999 99888776543322222 2333 4443 2234433332222 136899999999999986
Q ss_pred -CCCEEEcCCeEEEEEEeCCe---EEEEEccCc--EEEeCEEEEecCcCchh-HHH
Q 015167 92 -GNDIILNDSNVIDFMDHGDK---VSVMLENGQ--CYAGDVLVGADGIWSKM-NLL 140 (412)
Q Consensus 92 -~~~~i~~~~~v~~i~~~~~~---v~v~~~dG~--~~~adllVgADG~~S~v-r~~ 140 (412)
|++++.-| .|.++-++++- |+.....|+ +..|-|-|.|||..|.. |.+
T Consensus 160 lpNV~~eeG-tV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfSnlRrsL 214 (509)
T KOG1298|consen 160 LPNVRLEEG-TVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFSNLRRSL 214 (509)
T ss_pred CCCeEEeee-eHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhHHHHHHh
Confidence 78887655 45565555542 333333444 46789999999999999 444
No 72
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.46 E-value=0.0096 Score=59.77 Aligned_cols=83 Identities=12% Similarity=0.283 Sum_probs=66.5
Q ss_pred CCCCEEecCCCCCCCCceeEEe--CCCcccccceEEEEEC-CEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCE
Q 015167 297 ENEPYLIGSESQEDFPRTSIVI--PSAQVSKMHAHIRYKD-GAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNS 373 (412)
Q Consensus 297 ~~~~~~iGR~~~~~~~~~~~~i--~~~~vSr~Ha~i~~~~-~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~ 373 (412)
.+..+++||+...-.-.+|+.. +...|||+.|.|...+ |.|+|..|| ..-.||||. +|.+|+.+.|+...+
T Consensus 446 rk~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq~~~L~~ncl 519 (547)
T KOG2293|consen 446 RKKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQKVILKNNCL 519 (547)
T ss_pred cCcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCceEEeccCcE
Confidence 4788999999876443344444 3558999999998765 779999997 566999999 999999999999999
Q ss_pred EEECCCCceEEEEEE
Q 015167 374 IQFGSDKKATFQVKV 388 (412)
Q Consensus 374 i~~G~~~~~~f~~~~ 388 (412)
|+|-.- .|.|+.
T Consensus 520 veIrg~---~FiF~~ 531 (547)
T KOG2293|consen 520 VEIRGL---RFIFEI 531 (547)
T ss_pred EEEccc---eEEEee
Confidence 999876 466654
No 73
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.18 E-value=0.013 Score=63.04 Aligned_cols=80 Identities=23% Similarity=0.412 Sum_probs=64.9
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEEECCE--EEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGA--FYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQ 375 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~--~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~ 375 (412)
.....|||.+... +.||.+....|--.||.|.-++|. +.|.-+. -.-|||||. .+. ++..|+.||+|.
T Consensus 476 eG~TrVG~~~a~~--~~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~e-~aetyVNGk-----~v~--ep~qL~~GdRii 545 (1221)
T KOG0245|consen 476 EGETRVGREDASS--RQDIVLSGQLIREQHCSIRNEGGNDVVTLEPCE-DAETYVNGK-----LVT--EPTQLRSGDRII 545 (1221)
T ss_pred cCceecCCCCccc--CCceEecchhhhhhceEEEecCCCceEEeccCC-ccceeEccE-----EcC--CcceeccCCEEE
Confidence 5678999976432 468999999999999999999887 7777653 345999998 664 689999999999
Q ss_pred ECCCCceEEEEEEe
Q 015167 376 FGSDKKATFQVKVI 389 (412)
Q Consensus 376 ~G~~~~~~f~~~~~ 389 (412)
||..+ .|+|..+
T Consensus 546 lG~~H--~frfn~P 557 (1221)
T KOG0245|consen 546 LGGNH--VFRFNHP 557 (1221)
T ss_pred EcCce--eEEecCH
Confidence 99986 6888766
No 74
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=95.93 E-value=0.04 Score=55.61 Aligned_cols=77 Identities=8% Similarity=0.164 Sum_probs=56.0
Q ss_pred cccEEeeccCCCCCEEec-CCCCCCCCceeEEeCCCcccccceEEEEECCEEEEEEcCCccceeeeCcCCceeecCCCCc
Q 015167 287 SQPIYLSRSDENEPYLIG-SESQEDFPRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFP 365 (412)
Q Consensus 287 ~~~i~l~~~~~~~~~~iG-R~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~ 365 (412)
+..+.|.. ..++|| +.++ |++++.++.||++|+.|....+++.+.| +..+.++|+. ++..+..
T Consensus 12 G~~~~L~~----g~~~iG~~~~~-----~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~~~~~~g 75 (410)
T TIGR02500 12 GAELPLPE----GNLVLGTDAAD-----CDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----VLPDEEG 75 (410)
T ss_pred CcEEECCC----CceEeccCCCC-----cEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----ccccCCC
Confidence 45666654 449999 7765 5799999999999999999999999987 5677888883 2222334
Q ss_pred EEeCCCCEEEECCC
Q 015167 366 ARFRPSNSIQFGSD 379 (412)
Q Consensus 366 ~~l~~gd~i~~G~~ 379 (412)
.+|..+..+..|..
T Consensus 76 ~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 76 TPLPSGTPLLVAGV 89 (410)
T ss_pred CccCCCCceeccee
Confidence 55666666666644
No 75
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=95.31 E-value=0.042 Score=58.82 Aligned_cols=86 Identities=22% Similarity=0.337 Sum_probs=68.8
Q ss_pred ccEEeeccCCCCCEEecCCCCCCCCceeEEeCCCcccccceEEEEECCEEEEEEcCCccceeeeCcCCceeecCCCCcEE
Q 015167 288 QPIYLSRSDENEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFPAR 367 (412)
Q Consensus 288 ~~i~l~~~~~~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~ 367 (412)
..|+|.. .+.-+|-....+ .+|.+..+.|-.+||-|..-+|-+.|+-+.--.-|||||. +|. +++-
T Consensus 371 ~ri~L~~----~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~VnGh-----~is--qtti 436 (1629)
T KOG1892|consen 371 KRIRLQL----SVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYVNGH-----RIS--QTTI 436 (1629)
T ss_pred eeEEecc----CceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhccce-----ecc--hhhh
Confidence 4555543 556677766554 5789999999999999999999999998865567999999 775 5788
Q ss_pred eCCCCEEEECCCCceEEEEEEe
Q 015167 368 FRPSNSIQFGSDKKATFQVKVI 389 (412)
Q Consensus 368 l~~gd~i~~G~~~~~~f~~~~~ 389 (412)
|+.|+.|+||..+ .|+|...
T Consensus 437 L~~G~~v~fGa~h--sfkF~ds 456 (1629)
T KOG1892|consen 437 LQSGMKVQFGASH--SFKFVDS 456 (1629)
T ss_pred hccCCEEEeccce--eEEecCC
Confidence 9999999999985 5777654
No 76
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.18 E-value=0.086 Score=52.79 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=51.8
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
..++...|.+.|.+.+ .+++++++++|++++.+++++.|...+| ++.||.||.|+|.+|.-
T Consensus 144 g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~ 206 (393)
T PRK11728 144 GIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDR 206 (393)
T ss_pred eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHH
Confidence 3678888999998887 4788999999999988777787877776 79999999999999854
No 77
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=95.09 E-value=0.07 Score=51.88 Aligned_cols=61 Identities=30% Similarity=0.348 Sum_probs=51.7
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~S~v 137 (412)
..++-..|.+.|.+.+ .+++++.+++|++++.++++++ |.+++|+ +.||.||-|-|.+|.-
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 4688899999998887 4789999999999999999988 9999998 9999999999998754
No 78
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.68 E-value=0.15 Score=48.09 Aligned_cols=65 Identities=23% Similarity=0.289 Sum_probs=50.3
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-eEE-EEEc-----------cCcEEEeCEEEEecCcCchh-HH
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGD-KVS-VMLE-----------NGQCYAGDVLVGADGIWSKM-NL 139 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~v~-v~~~-----------dG~~~~adllVgADG~~S~v-r~ 139 (412)
+.+++..|...|.+.+ .+++++++++|+++..+++ .+. +... +..+++|++||.|+|.+|.+ +.
T Consensus 99 ~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~ 178 (257)
T PRK04176 99 YVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSV 178 (257)
T ss_pred eeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHH
Confidence 5788999999998887 4789999999999987655 332 2221 22479999999999999999 55
Q ss_pred H
Q 015167 140 L 140 (412)
Q Consensus 140 ~ 140 (412)
+
T Consensus 179 l 179 (257)
T PRK04176 179 L 179 (257)
T ss_pred H
Confidence 5
No 79
>PLN02568 polyamine oxidase
Probab=93.99 E-value=0.18 Score=52.80 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=47.2
Q ss_pred EEEeH--HHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEe
Q 015167 76 RVISR--MTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 76 ~~i~r--~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgA 130 (412)
+.+.. ..|.+.|.+.++...|+++++|+.|+..+++++|++.||++++||.||.+
T Consensus 235 ~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvT 291 (539)
T PLN02568 235 ITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVT 291 (539)
T ss_pred EEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEc
Confidence 34544 45888999988766799999999999999999999999999999999986
No 80
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=93.83 E-value=0.28 Score=50.94 Aligned_cols=85 Identities=11% Similarity=0.095 Sum_probs=65.9
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEE--ECCEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRY--KDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQ 375 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~--~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~ 375 (412)
...+++||.++. .|.+...||+.-++.. ..+.+.|.-|| .|=+-|||. .|.++....|++||.+.
T Consensus 31 ~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg-~np~~~~~~-----~~~~~~~~~l~~g~~l~ 97 (526)
T TIGR01663 31 AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLG-VNPCGTGGL-----ELKPGGEGELGHGDLLE 97 (526)
T ss_pred CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEcc-CCCcccCce-----EecCCCeeeecCCCEEE
Confidence 467889999986 7889999999999854 56779999997 588999999 99999999999999998
Q ss_pred ECCCC-ceEEEEEEeccCCCC
Q 015167 376 FGSDK-KATFQVKVIRSTPKK 395 (412)
Q Consensus 376 ~G~~~-~~~f~~~~~~~~~~~ 395 (412)
+=... ..+++|+....|+..
T Consensus 98 ~v~~~~~~~~~f~~~~~~~~~ 118 (526)
T TIGR01663 98 IVNGLHPLTLQFEETFNPEPE 118 (526)
T ss_pred EeccccceeEEeeeccCCCcc
Confidence 87642 222344433444443
No 81
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.80 E-value=0.23 Score=53.49 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=51.6
Q ss_pred EEeHHHHHHHHHhhcC-CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 77 VISRMTLQQILAHAVG-NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l~-~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.++-..|...|.+.+. +++++++++|++++..+++++|..++|..++||.||.|+|.+|.
T Consensus 404 ~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 4677888888988873 47889999999999888888888888888899999999999875
No 82
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.44 E-value=0.43 Score=44.86 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=50.1
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC--eEE-EEEc-----------cCcEEEeCEEEEecCcCchh-H
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGD--KVS-VMLE-----------NGQCYAGDVLVGADGIWSKM-N 138 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~--~v~-v~~~-----------dG~~~~adllVgADG~~S~v-r 138 (412)
+..++..+.+.|.+.+ .+++++++++++++..+++ ++. |... |..+++|++||.|+|..|.+ +
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~ 174 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVA 174 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHH
Confidence 5678999999998877 4689999999999987766 222 2222 22478999999999999988 5
Q ss_pred HH
Q 015167 139 LL 140 (412)
Q Consensus 139 ~~ 140 (412)
.+
T Consensus 175 ~l 176 (254)
T TIGR00292 175 VC 176 (254)
T ss_pred HH
Confidence 55
No 83
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=93.21 E-value=0.32 Score=50.40 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=48.2
Q ss_pred EEEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCe-EEEEEc---cCc--EEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDK-VSVMLE---NGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~-v~v~~~---dG~--~~~adllVgADG~~S~v 137 (412)
..++...|.+.|.+.+ ++++++++++|++++.++++ +.+++. +|+ +++|++||.|.|.+|.-
T Consensus 178 g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 178 TDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred eEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 4688889999998887 24789999999999986654 666654 354 68999998888887654
No 84
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.16 E-value=0.42 Score=47.23 Aligned_cols=58 Identities=22% Similarity=0.325 Sum_probs=45.3
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
++-..+...|.+.+ .++.++++++|++++.+++++.|+.++| ++.+|.||.|+|..|.
T Consensus 146 v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 146 LRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 44445555555444 4788999999999998888888888777 7999999999999764
No 85
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.05 E-value=0.45 Score=47.06 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=47.2
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.++-..+.+.|.+.+ .+++++++++|++++.+++++.|+.+++ ++.+|.||.|.|.++.
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTS 201 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchH
Confidence 567778888887766 4788999999999998877888877666 7899988888887643
No 86
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.00 E-value=0.33 Score=43.30 Aligned_cols=61 Identities=21% Similarity=0.139 Sum_probs=44.3
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
..+..+.+.|.+.+ -+..++++++|++++.++++..|++.++.+++||.||-|=|..|.-+
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC
Confidence 66777777776655 25559999999999999989999999998999999999999866543
No 87
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.87 E-value=0.41 Score=47.62 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
+...|.+.+ .++++++++++++++.+++++.+++.+|+++.+|+||.|.|..+...+
T Consensus 185 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l 243 (377)
T PRK04965 185 VSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTAL 243 (377)
T ss_pred HHHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHH
Confidence 334444444 378899999999998877778889999999999999999999776543
No 88
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.75 E-value=0.42 Score=47.58 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=52.2
Q ss_pred EEeHHHHHHHHHhhc-CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV-GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l-~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.++-..+...|.+.+ .+++++++++|++++.+++++.|+..+|..+.||.||-|.|.+|.-
T Consensus 131 ~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred ccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCccccc
Confidence 567788888888877 3678999999999998888888888888889999999999998754
No 89
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=92.43 E-value=0.45 Score=47.04 Aligned_cols=61 Identities=16% Similarity=0.035 Sum_probs=53.4
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
-.-..+.++|...+ .+++++.+++|.+++.++.+..++..+|++++||-||-|=|..|.=+
T Consensus 108 dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~ 170 (408)
T COG2081 108 DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPK 170 (408)
T ss_pred cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCC
Confidence 44577888888888 58999999999999999888999999999999999999999888543
No 90
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=92.35 E-value=0.53 Score=45.57 Aligned_cols=60 Identities=23% Similarity=0.324 Sum_probs=48.6
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~S~v 137 (412)
.++=..|...|.+.+ .+++++.+++|++++.+++++. |...+| +++||.||.|.|.+|.-
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~ 195 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGE 195 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhh
Confidence 567788888888876 4789999999999998777664 555555 89999999999998754
No 91
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=91.57 E-value=0.68 Score=46.57 Aligned_cols=55 Identities=22% Similarity=0.210 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCc
Q 015167 80 RMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWS 135 (412)
Q Consensus 80 r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S 135 (412)
...+.+.|.+.+ .++.++++++|++++.+++.+.++. ++.++.+|.||.|.|.+|
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEcCEEEECCCCcc
Confidence 466777777776 4788999999999988777777776 566899999999999987
No 92
>PLN02676 polyamine oxidase
Probab=91.22 E-value=0.62 Score=48.19 Aligned_cols=55 Identities=16% Similarity=0.133 Sum_probs=46.0
Q ss_pred HHHHHHHHHhhcC--------CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcC
Q 015167 80 RMTLQQILAHAVG--------NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 80 r~~L~~~L~~~l~--------~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~ 134 (412)
-..|.+.|.+.+. ...|+++++|++|++++++|+|+..+|++++||.||.|...+
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~ 285 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG 285 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence 4566677776551 357999999999999999999999999999999999999754
No 93
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.07 E-value=0.83 Score=46.72 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=46.6
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
++...|.+.+ .+++++.++++++++.+++++.+++.+|+++.+|.||-|.|.+..+.
T Consensus 217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~ 275 (461)
T PRK05249 217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTD 275 (461)
T ss_pred HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCcccc
Confidence 3445555555 47899999999999877778888888899999999999999987664
No 94
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=91.07 E-value=0.85 Score=46.09 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=52.6
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcE-EEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQC-YAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~-~~adllVgADG~~S~v 137 (412)
..|+-..+...|.+.+ .+..++++++|++++..+++ ..+...+|++ ++|++||-|=|..|--
T Consensus 148 giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 148 GIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred ceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 3678888888888877 57899999999999999884 5677888876 9999999999998755
No 95
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=91.02 E-value=0.89 Score=45.64 Aligned_cols=60 Identities=17% Similarity=0.071 Sum_probs=45.8
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC-----cEEEeCEEEEecCcCchh
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG-----QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG-----~~~~adllVgADG~~S~v 137 (412)
++-..+...|.+.+ .+++++++++|++++.+++++++...++ .+++||.||.|.|.+|.-
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 33345666666665 4789999999999998777777765543 368999999999999854
No 96
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=90.78 E-value=0.76 Score=46.37 Aligned_cols=59 Identities=20% Similarity=0.139 Sum_probs=41.6
Q ss_pred eHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCchh
Q 015167 79 SRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 79 ~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.-.++.++|.+.+ .+++++++++|.+++..+++ ..|.++++.++.||-||-|-|..|.-
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSG
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCcc
Confidence 3466777887777 38999999999999988887 77888788899999999999988744
No 97
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=90.61 E-value=0.61 Score=46.23 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCc
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~ 133 (412)
+..|+++++|++|+.+++++++++.||++++||.||.|=..
T Consensus 223 g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~ 263 (450)
T PF01593_consen 223 GGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPP 263 (450)
T ss_dssp GGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-H
T ss_pred CceeecCCcceeccccccccccccccceEEecceeeecCch
Confidence 44799999999999999999999999999999999877544
No 98
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=90.55 E-value=0.89 Score=46.10 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=42.6
Q ss_pred HHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCc
Q 015167 81 MTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 81 ~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~ 133 (412)
..|.+.|.+.++...|+++++|++|+.+++++.|++++|+++.||.||.|=-.
T Consensus 221 ~~l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~ 273 (451)
T PRK11883 221 QSLIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPH 273 (451)
T ss_pred HHHHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCH
Confidence 34556666666433799999999999888889899999999999999998544
No 99
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=90.23 E-value=0.9 Score=46.48 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecC
Q 015167 81 MTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADG 132 (412)
Q Consensus 81 ~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG 132 (412)
..|.+.|.+.++..+|+++++|+.|+.+++++.|++.+|+++.||.||.|=-
T Consensus 226 ~~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p 277 (463)
T PRK12416 226 STIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (463)
T ss_pred HHHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCC
Confidence 4566777777744579999999999999889989888998899999998763
No 100
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.19 E-value=1.2 Score=46.33 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=47.5
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC----cEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG----QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG----~~~~adllVgADG~~S~v 137 (412)
.++-..|...|...+ .++.++.+++|+++..+++.+.|++.++ .+++|++||.|.|.+|.-
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~ 217 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTD 217 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence 356677766666554 4788999999999988877777777665 359999999999998754
No 101
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.31 E-value=0.88 Score=34.25 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccC
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENG 119 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG 119 (412)
++++++++++++++.++++++|+|+||
T Consensus 54 gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 54 GVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 899999999999999988888999987
No 102
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.20 E-value=1.3 Score=46.10 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=49.4
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.....|.+.|.+.+ -++.+++++++++++..++...+++.+|..+.+|.||.|.|.++.
T Consensus 263 ~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 263 TEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcC
Confidence 45667878887776 368899999999999877778888889989999999999999763
No 103
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=89.18 E-value=1.1 Score=45.67 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcC
Q 015167 82 TLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 82 ~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~ 134 (412)
.|-+.|.+.++...|+++++|+.|+.++++++|++++|+++.||.||-|=-..
T Consensus 226 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 226 TLPEEIEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred HHHHHHHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 55566667775467999999999999888888998899889999999876543
No 104
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=88.67 E-value=1.4 Score=46.70 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=47.9
Q ss_pred EEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~S~v 137 (412)
.++|..+...|.+.+ +++.++ ..+|+++..+++.+. |.+.+|..+.|++||.|+|..+.=
T Consensus 96 QiDr~ly~kaL~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL~g 159 (618)
T PRK05192 96 QADRKLYRAAMREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFLRG 159 (618)
T ss_pred hcCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcchhc
Confidence 688888888888776 467764 667888877766654 778899999999999999986543
No 105
>PRK06116 glutathione reductase; Validated
Probab=88.34 E-value=1.7 Score=44.30 Aligned_cols=56 Identities=16% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
+.+.|.+.+ .++++++++++++++.++++ +.+.+.+|+++.+|.||.|-|....+.
T Consensus 210 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~ 268 (450)
T PRK06116 210 IRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred HHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCC
Confidence 444555555 47899999999999876655 778888999999999999999876663
No 106
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=88.24 E-value=1.4 Score=44.28 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=34.4
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEe
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgA 130 (412)
+-.|.++.+|..|.+++++|+|+..+.++..+|++|++
T Consensus 220 ~~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~t 257 (450)
T COG1231 220 GTRILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVT 257 (450)
T ss_pred hceEEecCceeeEEEcCCeEEEEeCCcceEEecEEEEe
Confidence 44577899999999999999999998788999999987
No 107
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=88.14 E-value=1.8 Score=43.42 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=44.6
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcCch
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~S~ 136 (412)
++-..+...|.+.+ .+++++.+++|++++.+++++. ++.. +.++.||.||-|-|.+|.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYST 258 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchH
Confidence 34456667777665 4788999999999988777754 5544 457999999999999885
No 108
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=87.99 E-value=2.1 Score=42.83 Aligned_cols=55 Identities=27% Similarity=0.390 Sum_probs=43.2
Q ss_pred HHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 84 QQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 84 ~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
...|.+.+ .++++++++++++++. ++.+.+++.+|+++.+|+||.|-|......+
T Consensus 189 ~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l 245 (396)
T PRK09754 189 QRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQL 245 (396)
T ss_pred HHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHH
Confidence 34444444 3789999999999976 5567788999999999999999999766543
No 109
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=87.96 E-value=1.9 Score=44.64 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=48.7
Q ss_pred EEEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEe-CCeEEEEE---ccCc--EEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV---GNDIILNDSNVIDFMDH-GDKVSVML---ENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~-~~~v~v~~---~dG~--~~~adllVgADG~~S~v 137 (412)
..|+...|.+.|.+.+ ++++++++++|++++.. ++++++++ .+|+ +++||+||-|=|.+|.-
T Consensus 179 ~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 179 TDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred eecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 4789999999998877 36899999999999877 55666654 3442 68999998888888754
No 110
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=87.79 E-value=1.9 Score=44.83 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=45.0
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEcc---Cc--EEEeCEEEEecCcCchh
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLEN---GQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~d---G~--~~~adllVgADG~~S~v 137 (412)
++-..|...|...+ .++.++.+++|+++..+++.+.|++.+ |+ +++|+.||.|.|.+|.-
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~ 218 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQ 218 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHH
Confidence 45555555555444 478899999999998877777777664 53 68999999999998753
No 111
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=87.56 E-value=2.5 Score=42.25 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=47.4
Q ss_pred EEEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EEEccCcEEEeCEEEEecCcC
Q 015167 76 RVISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VMLENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~~~dG~~~~adllVgADG~~ 134 (412)
+.++|..+.+.+.+.+ ++++|+ ..+|+++..+++.|. |.+.+|..+.+|.||-|.|..
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEecccc
Confidence 5899999999998887 677775 678999998888754 788899999999999999983
No 112
>PLN02268 probable polyamine oxidase
Probab=87.54 E-value=1.3 Score=44.93 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=35.2
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEec
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGAD 131 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgAD 131 (412)
...|+++++|++++..++++.|++.+|+++.||.||.|-
T Consensus 210 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~ 248 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAV 248 (435)
T ss_pred cCceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEec
Confidence 346899999999999988999999999999999999995
No 113
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=87.48 E-value=2.9 Score=35.93 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=43.3
Q ss_pred EEeHHHHHHHHHhhc-------C-CCEE-EcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCc
Q 015167 77 VISRMTLQQILAHAV-------G-NDII-LNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l-------~-~~~i-~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~ 133 (412)
.+.|..+-+.|.+.+ + +++| +...+|++++..+++..|.++||.++.+|.||-|-|-
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 466766665555443 2 3333 3477999999999999999999999999999999884
No 114
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=86.77 E-value=2 Score=45.52 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE----EEEccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS----VMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~----v~~~dG~--~~~adllVgADG~~S~v 137 (412)
..|.+.|++.+ ++++++.++.++++..+++.+. +...+|+ .+.|+.||.|+|..|.+
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l 198 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV 198 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCC
Confidence 35667777765 4688999999999987766543 2345674 68999999999999976
No 115
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=85.60 E-value=3.2 Score=42.61 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
+...|.+.+ .++.++.++++++++.+++++.+.+.+|+++.+|.||-|-|......
T Consensus 220 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~ 277 (466)
T PRK07845 220 AAEVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTA 277 (466)
T ss_pred HHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCC
Confidence 344444444 37899999999999877778888888999999999999999976653
No 116
>PRK07846 mycothione reductase; Reviewed
Probab=85.30 E-value=3 Score=42.65 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.++.++.++++++++.+++++.+++.+|+++.+|.||.|-|....+.
T Consensus 219 ~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 265 (451)
T PRK07846 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGD 265 (451)
T ss_pred cCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcc
Confidence 35889999999999877777888888999999999999999987664
No 117
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=84.97 E-value=3 Score=43.29 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=47.3
Q ss_pred EEeHHHHHHHHHhhc-C-----C--CEEEcCCeEEEEEEe-CCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV-G-----N--DIILNDSNVIDFMDH-GDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l-~-----~--~~i~~~~~v~~i~~~-~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.++-..|.+.|.+.+ . + +.++++++|++++.. ++.+.|+..+| +++||.||-|=|.+|.-
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLL 275 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHH
Confidence 577777877776665 2 2 678999999999987 44567777766 69999999999999864
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=84.96 E-value=3.3 Score=43.15 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=47.1
Q ss_pred eHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCc
Q 015167 79 SRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWS 135 (412)
Q Consensus 79 ~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S 135 (412)
....|.+.|.+.+ .++.++.+++|++++.+++...+++.+|..+.+|.||.|.|++.
T Consensus 265 ~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 265 TGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW 323 (515)
T ss_pred CHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence 4566777776666 37889999999999887777888888999999999999999864
No 119
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=84.53 E-value=3.4 Score=39.03 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=44.5
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
+....+...|.+.+ .++++++ .+|++++.+++.+.+++.++.++.+|.||.|.|....
T Consensus 54 ~~~~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~ 113 (300)
T TIGR01292 54 ISGPELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR 113 (300)
T ss_pred CChHHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc
Confidence 33445556665554 3677777 8899998877778888888889999999999998643
No 120
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=84.46 E-value=3.5 Score=44.94 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCCEEecCCCCCCCCceeEEeCCCcccccceEEEEEC-CEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEE
Q 015167 298 NEPYLIGSESQEDFPRTSIVIPSAQVSKMHAHIRYKD-GAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQF 376 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~~~~vSr~Ha~i~~~~-~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~ 376 (412)
....+||-.... ++++..-.+=++||.|..+. +.+++.-+.+. -+||||. .+ ..+++|.+||+|..
T Consensus 466 ~~~tlig~~~~~-----~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~~VNGs-----~v--~~~t~L~~GdRiLw 532 (1714)
T KOG0241|consen 466 KDHTLIGLFKSQ-----DIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RSCVNGS-----LV--CSTTQLWHGDRILW 532 (1714)
T ss_pred cCceeeccccCc-----ceeeecCcccCccceeeeccCCcEEecccccc-eeeecCc-----ee--ccccccccCceEEe
Confidence 567888865544 58888888999999998765 55898888655 7999997 44 35899999999999
Q ss_pred CCCCceEEEEEEec
Q 015167 377 GSDKKATFQVKVIR 390 (412)
Q Consensus 377 G~~~~~~f~~~~~~ 390 (412)
|.++ -|++..++
T Consensus 533 GnnH--FFrvN~PK 544 (1714)
T KOG0241|consen 533 GNNH--FFRVNLPK 544 (1714)
T ss_pred cccc--eEEecCcc
Confidence 9986 36766554
No 121
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=83.82 E-value=4.3 Score=41.44 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=45.3
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC--cEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG--QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG--~~~~adllVgADG~~S~vr 138 (412)
.+...+.+.+ .++++++++++++++.+++++.+.+.+| .++.+|.||-|-|..+.+.
T Consensus 212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 4455555555 3688999999999988777888887777 5799999999999987663
No 122
>PLN02507 glutathione reductase
Probab=83.65 E-value=4.3 Score=42.10 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=44.9
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
+.+.+.+.+ .+++++.+++|++++.+++++.+++.+|+++.+|+||-|=|....+.
T Consensus 246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 246 MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCC
Confidence 334444444 37899999999999877778888888898999999999999877663
No 123
>PRK07233 hypothetical protein; Provisional
Probab=83.30 E-value=3.3 Score=41.56 Aligned_cols=54 Identities=20% Similarity=0.118 Sum_probs=43.2
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcC
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~ 134 (412)
..|.+.|.+.+ .+++|+++++|++++.+++++++...++.++++|.||.|=..+
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence 45667777766 3678999999999998888776666788899999999887764
No 124
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=83.16 E-value=4.7 Score=41.64 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=45.2
Q ss_pred EEEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-eEEEEEc---cC--cEEEeCEEEEecCcCch
Q 015167 76 RVISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGD-KVSVMLE---NG--QCYAGDVLVGADGIWSK 136 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~v~v~~~---dG--~~~~adllVgADG~~S~ 136 (412)
..|+-..|.+.|.+.+ .+++++++++|++++.+++ ++.+++. +| .+++||.||-|=|.+|.
T Consensus 173 g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~ 241 (483)
T TIGR01320 173 TDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL 241 (483)
T ss_pred EEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence 3688899999998887 4789999999999988654 5666543 34 26899998655555543
No 125
>PRK09897 hypothetical protein; Provisional
Probab=82.71 E-value=4.3 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=34.9
Q ss_pred CEEEcCCeEEEEEEeCCeEEEEEcc-CcEEEeCEEEEecCc
Q 015167 94 DIILNDSNVIDFMDHGDKVSVMLEN-GQCYAGDVLVGADGI 133 (412)
Q Consensus 94 ~~i~~~~~v~~i~~~~~~v~v~~~d-G~~~~adllVgADG~ 133 (412)
+.++.+++|++++..++++.|++.+ |.++.+|.||.|.|-
T Consensus 124 V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 124 VAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGH 164 (534)
T ss_pred EEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCC
Confidence 5777899999999988889898866 468999999999996
No 126
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=82.65 E-value=4.9 Score=41.08 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=44.8
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC---cEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG---QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG---~~~~adllVgADG~~S~vr 138 (412)
.+...+.+.+ .++.++.++++++++.+++++.+.+.+| +++.+|.||-|=|....+.
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~ 275 (462)
T PRK06416 214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTE 275 (462)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCC
Confidence 3444555555 3789999999999998777888888776 6799999999999876653
No 127
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=82.28 E-value=5.6 Score=40.21 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=49.1
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEE-ccC--cEEEeCEEEEecCcC-chh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVML-ENG--QCYAGDVLVGADGIW-SKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~-~dG--~~~~adllVgADG~~-S~v 137 (412)
++.-..|.+.|.+.+ -+++++.+.+|++++.++++++... .++ .+++||-+|-|-|++ |.=
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~g 325 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNG 325 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHH
Confidence 577788888888887 3678888999999998888776444 555 479999999999999 763
No 128
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=82.10 E-value=3.8 Score=42.33 Aligned_cols=57 Identities=23% Similarity=0.230 Sum_probs=43.7
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EEEcc-C--cEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VMLEN-G--QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~~~d-G--~~~~adllVgADG~~S~v 137 (412)
..|.+.|.+.+ ++++++++++++++..+++.+. +.+.+ + ..+.++.||.|+|..|.+
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~ 191 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKL 191 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCC
Confidence 46777787776 4789999999999987666554 44433 3 368999999999999976
No 129
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=81.90 E-value=5.3 Score=40.84 Aligned_cols=47 Identities=28% Similarity=0.293 Sum_probs=40.3
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.++.++.++++++++.+++++.+++.+|+++.+|.||-|-|......
T Consensus 222 ~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~ 268 (452)
T TIGR03452 222 KKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGD 268 (452)
T ss_pred cCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCC
Confidence 36889999999999877777888888898999999999999876553
No 130
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=80.85 E-value=5.4 Score=41.22 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.5
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
..|.+.|.+.+ .+++++++++|+++..++++ +.|++++|++++||.||.|=+.+...
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~ 278 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTY 278 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHH
Confidence 56777777776 37889999999999887766 56888899999999999876665555
No 131
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=79.98 E-value=6.7 Score=39.99 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
+...|.+.+ .++.++.++++++++.+++++.+++.+|+++.+|+||-|=|....+
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 209 MRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 344444444 3789999999999988777788888889999999999999987655
No 132
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=79.31 E-value=7.2 Score=39.91 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=45.7
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.++-..|.+.|.+.+ .+++++.+++|++++. ++.+.|+.++| +++||.||-|-|++|.
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 567778888888776 4789999999999975 44566776666 6899999999888864
No 133
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=78.93 E-value=6.4 Score=40.21 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe--EEEEEccCcEEEeCEEEEecCc
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK--VSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~--v~v~~~dG~~~~adllVgADG~ 133 (412)
..|-+.|.+.+ .+.++++++.|+++..++++ +.|++++|+++.|+.||+....
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccc
Confidence 45777777665 47789999999999877543 5688999999999999984443
No 134
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=78.55 E-value=6.8 Score=41.50 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=43.5
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE----EEEccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS----VMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~----v~~~dG~--~~~adllVgADG~~S~v 137 (412)
..|.+.|++.+ ++++++.++.++++..+++.|. +...+|+ .+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 45777777765 4788999999999987766543 2334674 58999999999999865
No 135
>PRK07804 L-aspartate oxidase; Provisional
Probab=78.45 E-value=5.6 Score=41.76 Aligned_cols=57 Identities=21% Similarity=0.254 Sum_probs=41.6
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-e---EEEE-----EccC-cEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGD-K---VSVM-----LENG-QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~---v~v~-----~~dG-~~~~adllVgADG~~S~v 137 (412)
..+.+.|.+.+ .++++++++.++++..+++ . +.+. ..++ ..+.|+.||.|+|..|.+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~~ 212 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQL 212 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCCC
Confidence 45677777776 3589999999999987654 3 3333 1233 358999999999999875
No 136
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=77.61 E-value=4.9 Score=40.03 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=37.9
Q ss_pred HHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEE-ccCcEEEeCEEEEecCcC
Q 015167 85 QILAHAV--GNDIILNDSNVIDFMDHGDKVSVML-ENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 85 ~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~-~dG~~~~adllVgADG~~ 134 (412)
+.|.+.+ .+.+|+++++|++|+.+++++++.. .+|+++.||.||.|--..
T Consensus 201 ~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~ 253 (419)
T TIGR03467 201 EPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR 253 (419)
T ss_pred HHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence 3355544 2678999999999999888776654 478889999999986554
No 137
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=76.49 E-value=8.4 Score=39.79 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
..|.+.|.+.+ .+++|+++++|++|..++++ ..|.+++|++++||.||.|=|....++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHH
Confidence 56777777777 37899999999999876654 457788999999999999877777664
No 138
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=76.23 E-value=7.6 Score=38.85 Aligned_cols=60 Identities=20% Similarity=0.207 Sum_probs=42.1
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEe-CCeE-EEEEccCcEEEeC-EEEEecCcCchhH
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDH-GDKV-SVMLENGQCYAGD-VLVGADGIWSKMN 138 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~-~~~v-~v~~~dG~~~~ad-llVgADG~~S~vr 138 (412)
++-..+...|.+.+ .+++++.+++|++++.. ++++ .|...+| ++.++ +||+|+|-.|.+.
T Consensus 180 v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~ 244 (407)
T TIGR01373 180 ARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVA 244 (407)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHH
Confidence 44555666676665 47889999999999754 3444 3666666 57777 6788888777663
No 139
>PLN02612 phytoene desaturase
Probab=75.72 E-value=8 Score=40.85 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=39.4
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCe--EEEEEccCcEEEeCEEEEecCc
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDK--VSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~--v~v~~~dG~~~~adllVgADG~ 133 (412)
|.+.|.+.+ .+++|+++++|++|+.++++ +.+++.+|+.+.||.||-|-..
T Consensus 310 l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~ 364 (567)
T PLN02612 310 LCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV 364 (567)
T ss_pred HHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence 445565554 36789999999999986555 3477789999999999999754
No 140
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=75.60 E-value=11 Score=38.60 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=43.5
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc--cCc--EEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLE--NGQ--CYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~--dG~--~~~adllVgADG~~S~vr 138 (412)
++...|.+.+ .+++++.+++|++++.+++.+.+++. +|+ ++.+|.||-|=|....+.
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 276 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE 276 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence 3555555555 37899999999999877666666665 664 699999999999876653
No 141
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=75.59 E-value=9.8 Score=39.12 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=43.6
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC----cEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG----QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG----~~~~adllVgADG~~S~vr 138 (412)
.+...+.+.+ .++.++.+++|++++.+++++.+++.++ .++.+|.||-|=|....+.
T Consensus 225 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~ 287 (475)
T PRK06327 225 QVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTD 287 (475)
T ss_pred HHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCC
Confidence 3444555555 3789999999999988777787877654 4699999999999877663
No 142
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=74.89 E-value=8.9 Score=42.21 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=39.6
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.++.++.+++++++..++....|+|+||+++.+|+||-|=|.+....
T Consensus 195 ~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~ 241 (785)
T TIGR02374 195 KGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE 241 (785)
T ss_pred cCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence 37899999999999766555668899999999999999999976553
No 143
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=74.55 E-value=9.6 Score=40.17 Aligned_cols=56 Identities=20% Similarity=0.354 Sum_probs=41.5
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EE---EccCc--EEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VM---LENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~---~~dG~--~~~adllVgADG~~S~v 137 (412)
.+...|.+.+ .++++++++.++++..+++++. |. ..+|+ .+.|+.||.|+|..|.+
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~~~ 193 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRI 193 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcccCC
Confidence 4556666655 3789999999999987766543 22 24564 58999999999999866
No 144
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=74.07 E-value=8.4 Score=39.22 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=49.9
Q ss_pred EEEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCe-EEEEEcc---C--cEEEeCEEEEecCcCchh
Q 015167 76 RVISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDK-VSVMLEN---G--QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 76 ~~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~-v~v~~~d---G--~~~~adllVgADG~~S~v 137 (412)
.-|+-..|-+.|.+.+ ++..++++++|+++++.+++ ..|...| | .+++|++|+..=|.+|--
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~ 246 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP 246 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhHH
Confidence 4577888888888887 47899999999999998776 7776643 3 469999998888888755
No 145
>PLN02576 protoporphyrinogen oxidase
Probab=73.59 E-value=10 Score=39.05 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=38.5
Q ss_pred HHHHHHHHhhcCCCEEEcCCeEEEEEEeCCe-EEEEEc--cCc-EEEeCEEEEec
Q 015167 81 MTLQQILAHAVGNDIILNDSNVIDFMDHGDK-VSVMLE--NGQ-CYAGDVLVGAD 131 (412)
Q Consensus 81 ~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~-v~v~~~--dG~-~~~adllVgAD 131 (412)
..|-+.|.+.++...|+++++|+.|+..+++ +.|++. +|+ +++||.||-|=
T Consensus 239 ~~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~ 293 (496)
T PLN02576 239 QTLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTA 293 (496)
T ss_pred HHHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECC
Confidence 3566777777743579999999999988776 666654 453 68999999874
No 146
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=72.76 E-value=8.2 Score=42.37 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEec
Q 015167 80 RMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGAD 131 (412)
Q Consensus 80 r~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgAD 131 (412)
...|.+.|.+.++ |++++.|+.|...+++|.| ..+|+++.||.||.+=
T Consensus 436 ~~~Li~aLa~~L~---I~ln~~V~~I~~~~dgV~V-~~~G~~~~AD~VIvTv 483 (808)
T PLN02328 436 NDTFVRELAKDLP---IFYERTVESIRYGVDGVIV-YAGGQEFHGDMVLCTV 483 (808)
T ss_pred HHHHHHHHHhhCC---cccCCeeEEEEEcCCeEEE-EeCCeEEEcCEEEECC
Confidence 4566677777663 7899999999999888877 5678889999999874
No 147
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=72.58 E-value=13 Score=38.47 Aligned_cols=58 Identities=22% Similarity=0.240 Sum_probs=44.8
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.++.+.+.+.+ .++.++.++++++++.++++ ..+++.+|+++.+|+||-|=|....+.
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 34445555555 47899999999999876544 667888888999999999999876664
No 148
>PTZ00052 thioredoxin reductase; Provisional
Probab=71.85 E-value=15 Score=38.18 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 85 QILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 85 ~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
+.|.+.+ .++.++.+++++.++..++.+.+.+.+|+++.+|.||-|=|....+..
T Consensus 226 ~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~ 282 (499)
T PTZ00052 226 EKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG 282 (499)
T ss_pred HHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence 4444444 368899999999998766667788889999999999999999877643
No 149
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=71.56 E-value=17 Score=37.23 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=41.0
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC--cEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG--QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG--~~~~adllVgADG~~S~vr 138 (412)
++.+.|.+.+ .+++++.++++++++.++..+.+.. +| .++.+|+||-|-|....+.
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D~vivA~G~~p~~~ 271 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAEFVLVSVGRKPRVQ 271 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeCEEEEecCCccCCC
Confidence 3455555555 3789999999999987665555543 44 3689999999999887663
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=71.02 E-value=14 Score=36.19 Aligned_cols=55 Identities=13% Similarity=-0.015 Sum_probs=42.4
Q ss_pred EEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 77 VISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.++-..+...|.+.+ .+++++.+++|++++.. .|+..+| +++||.||-|-|.+|.
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 466677777777765 37889999999999643 4666666 4789999999999874
No 151
>PLN02529 lysine-specific histone demethylase 1
Probab=70.89 E-value=11 Score=41.07 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEe
Q 015167 80 RMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 80 r~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgA 130 (412)
...|.+.|.+.+ .|+++++|+.|+.++++|+|+. ++++++||.||.+
T Consensus 356 ~~~Li~aLA~~L---~IrLnt~V~~I~~~~dGVtV~t-~~~~~~AD~VIVT 402 (738)
T PLN02529 356 NWRLINALCEGV---PIFYGKTVDTIKYGNDGVEVIA-GSQVFQADMVLCT 402 (738)
T ss_pred HHHHHHHHHhcC---CEEcCCceeEEEEcCCeEEEEE-CCEEEEcCEEEEC
Confidence 456666676665 3899999999999999988874 5567899998876
No 152
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=70.77 E-value=16 Score=37.54 Aligned_cols=56 Identities=23% Similarity=0.181 Sum_probs=42.2
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc---cC--cEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLE---NG--QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~---dG--~~~~adllVgADG~~S~vr 138 (412)
+...|.+.+ .++.++.++++++++.+++++.+++. +| +++.+|.||-|-|....+.
T Consensus 217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 279 (466)
T PRK06115 217 TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccc
Confidence 455555555 37899999999999877667766654 23 4799999999999876653
No 153
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=70.07 E-value=17 Score=36.34 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=44.0
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccC-cEEEeCEEEEecCcCch
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENG-QCYAGDVLVGADGIWSK 136 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG-~~~~adllVgADG~~S~ 136 (412)
.-.-.++.++|...+ .++.++++++|+++ ++++..+.+.++ .++.||-||-|=|..|.
T Consensus 82 S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~ 142 (376)
T TIGR03862 82 EMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASW 142 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccc
Confidence 345567778888877 58999999999999 334466666543 46999999999998773
No 154
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=69.96 E-value=17 Score=36.67 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.6
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+...+.+.+ .++++++++++++++.++ .+ +.+.+|+++.+|+||.|-|.+.....+
T Consensus 181 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 181 MNQIVEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 344444444 378999999999997643 33 567889999999999999997665433
No 155
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=69.27 E-value=17 Score=36.78 Aligned_cols=57 Identities=19% Similarity=0.084 Sum_probs=41.7
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-e---EEEEEccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGD-K---VSVMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~---v~v~~~dG~--~~~adllVgADG~~S~v 137 (412)
..|.+.|.+.+ .+++++++++++++..+++ . +.+...+++ .+.++.||-|.|..|.-
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n 194 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSN 194 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCC
Confidence 45667777766 4789999999999987643 2 334334454 37899999999998875
No 156
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=68.86 E-value=12 Score=38.66 Aligned_cols=54 Identities=20% Similarity=0.212 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-eEEEEEccCcEEEeCEEEEecCc
Q 015167 80 RMTLQQILAHAV--GNDIILNDSNVIDFMDHGD-KVSVMLENGQCYAGDVLVGADGI 133 (412)
Q Consensus 80 r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~v~v~~~dG~~~~adllVgADG~ 133 (412)
-..|-++|.+.+ .+++|+++++|+.|..+++ ++.++..+|..+++|.||.+=..
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence 467778888877 4789999999999998876 57788888877899988875444
No 157
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=68.76 E-value=14 Score=37.31 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCc
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWS 135 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S 135 (412)
+.+.+.+.+ .+++++.++++++++. + .++++||+++.+|+||-|=|...
T Consensus 230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 230 LRKYGQRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred HHHHHHHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCC
Confidence 344444444 3799999999998864 3 36688999999999999999754
No 158
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.72 E-value=19 Score=36.48 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.+.+.|.+.+ .++++++++++++++.+++++.++..++ ++.+|.||-|=|.....
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 3444555555 4789999999999988777777776555 58999999999987665
No 159
>PLN03000 amine oxidase
Probab=68.59 E-value=13 Score=41.17 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEec
Q 015167 80 RMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGAD 131 (412)
Q Consensus 80 r~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgAD 131 (412)
...|-+.|.+.++ |++++.|+.|+.++++|.|+.. +++++||.||.|=
T Consensus 380 ~~~LieaLa~~L~---I~Ln~~Vt~I~~~~dgV~V~~~-~~~~~AD~VIvTV 427 (881)
T PLN03000 380 NGRLVQALAENVP---ILYEKTVQTIRYGSNGVKVIAG-NQVYEGDMVLCTV 427 (881)
T ss_pred HHHHHHHHHhhCC---cccCCcEEEEEECCCeEEEEEC-CcEEEeceEEEcC
Confidence 4566677777773 8899999999999999998864 3579999999763
No 160
>PLN02976 amine oxidase
Probab=68.45 E-value=14 Score=43.20 Aligned_cols=48 Identities=25% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhcCCCEEEcCCeEEEEEEe----------CCeEEEEEccCcEEEeCEEEEe
Q 015167 80 RMTLQQILAHAVGNDIILNDSNVIDFMDH----------GDKVSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 80 r~~L~~~L~~~l~~~~i~~~~~v~~i~~~----------~~~v~v~~~dG~~~~adllVgA 130 (412)
...|.+.|.+.+ .|++++.|+.|+.. +++|.|+..+|++++||.||.+
T Consensus 935 YqqLIeALAe~L---~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVT 992 (1713)
T PLN02976 935 YSNVVESLAEGL---DIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLIT 992 (1713)
T ss_pred HHHHHHHHHhhC---CeecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEe
Confidence 345666666666 38899999999874 4579999999999999999975
No 161
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=68.20 E-value=5.6 Score=42.55 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=37.3
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
+++++.++..+.+...+....+.|+||+.+.||+||-|+|++=..
T Consensus 201 Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 201 GIKVLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred cceeecccchhhhhcCcceeeEeecCCCcccceeEEEeccccccc
Confidence 678888887777766444567999999999999999999997655
No 162
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=68.20 E-value=13 Score=37.99 Aligned_cols=48 Identities=17% Similarity=0.228 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEE
Q 015167 81 MTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVG 129 (412)
Q Consensus 81 ~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVg 129 (412)
..|.++|.+.++ ..|+++++|+.+..+..+..+.+.+|..++||-||-
T Consensus 215 ~~l~~al~~~l~-~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~ 262 (444)
T COG1232 215 QSLIEALAEKLE-AKIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVIS 262 (444)
T ss_pred HHHHHHHHHHhh-hceeecceeeEEEEcCCccEEEEcCCceEEcceEEE
Confidence 566777778774 338999999999998778888899998866555553
No 163
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=68.12 E-value=20 Score=36.62 Aligned_cols=56 Identities=13% Similarity=0.095 Sum_probs=43.0
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccC-cEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENG-QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG-~~~~adllVgADG~~S~vr 138 (412)
+...+.+.+ .++.++.++++++++.++++ +.+++.+| +.+.+|.||-|=|....+.
T Consensus 209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 444454544 47899999999999876544 77888888 5799999999999876663
No 164
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=67.96 E-value=17 Score=40.33 Aligned_cols=54 Identities=17% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHhhc--CCCEEEcCCeEEEEEEeC--CeEEEEEccCcEEEeCEEEEecCcCchhHH
Q 015167 86 ILAHAV--GNDIILNDSNVIDFMDHG--DKVSVMLENGQCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 86 ~L~~~l--~~~~i~~~~~v~~i~~~~--~~v~v~~~dG~~~~adllVgADG~~S~vr~ 139 (412)
.|.+.+ .+++++.+++++++..++ ....++++||+++.+|+||-|=|.+....+
T Consensus 192 ~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L 249 (847)
T PRK14989 192 QLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKL 249 (847)
T ss_pred HHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchH
Confidence 344444 378999999999997643 245688999999999999999999866643
No 165
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=67.89 E-value=1.7 Score=44.11 Aligned_cols=63 Identities=19% Similarity=0.351 Sum_probs=0.0
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEcc--C-cEEEeCEEEEecCcCchhHHH
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLEN--G-QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~d--G-~~~~adllVgADG~~S~vr~~ 140 (412)
++...+..+|.+.+ .++++++++.|+++..+++++. |++.+ | .+++|+++|-|.|--...++.
T Consensus 87 ~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~a 155 (428)
T PF12831_consen 87 FDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGDGDLAALA 155 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44444455555554 4789999999999998876543 55543 3 579999999999964333443
No 166
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=67.40 E-value=3.8 Score=40.89 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCc
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWS 135 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S 135 (412)
.++.++-+..|.++......+.+.+.||.+++.|+||.|=|---
T Consensus 406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~eP 449 (659)
T KOG1346|consen 406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEP 449 (659)
T ss_pred cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCC
Confidence 47889999999999888888999999999999999999999743
No 167
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=67.01 E-value=21 Score=36.45 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=41.3
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEcc---CcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLEN---GQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~d---G~~~~adllVgADG~~S~vr 138 (412)
+...|.+.+ .+++++++++|+.++.+++.+.+++.+ +.++.+|.||-|=|....+.
T Consensus 209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~ 269 (463)
T TIGR02053 209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTD 269 (463)
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCC
Confidence 344454544 378999999999998776666666542 35799999999999876653
No 168
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=66.32 E-value=20 Score=36.39 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=42.2
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcCc
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIWS 135 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~S 135 (412)
.+..-+.+.+ -++.++|+++|.+++..++. -.|..++|.++.+|.||-|=|..+
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 3344455555 25899999999999988775 457888999999999999999643
No 169
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=65.93 E-value=23 Score=36.38 Aligned_cols=59 Identities=15% Similarity=0.073 Sum_probs=44.1
Q ss_pred EeHHHHHHHHHhhc--CCC--EEEcCCeEEEEEEeCCeEEEEEccCc----EEEeCEEEEecCcCch
Q 015167 78 ISRMTLQQILAHAV--GND--IILNDSNVIDFMDHGDKVSVMLENGQ----CYAGDVLVGADGIWSK 136 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~--~i~~~~~v~~i~~~~~~v~v~~~dG~----~~~adllVgADG~~S~ 136 (412)
.....+.+.|.+.+ -++ .|+++++|++++..+++..|+..++. +..+|.||.|-|..|.
T Consensus 108 p~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 108 PSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred CCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 35667777787766 133 38899999999988778888776432 4578999999998653
No 170
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=65.80 E-value=21 Score=37.56 Aligned_cols=61 Identities=26% Similarity=0.397 Sum_probs=44.9
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc---cC--cEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE---NG--QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~---dG--~~~~adllVgADG~~S~v 137 (412)
.++-..|...|...+ .+++++.+++|+++..+++++. |++. +| .+++|+.||-|-|.+|.-
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence 466666666666654 4788999999999988776543 4443 23 368999999999998754
No 171
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=65.61 E-value=20 Score=36.94 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeE-EEEEccC-----cEEEeCEEEEecCc
Q 015167 80 RMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKV-SVMLENG-----QCYAGDVLVGADGI 133 (412)
Q Consensus 80 r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v-~v~~~dG-----~~~~adllVgADG~ 133 (412)
-..|-+.|.+.+ .+.+|+++++|++|..+++++ .+.+.+| +++.||.||.+=-.
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 456777888777 478899999999999877653 3444454 56889988876444
No 172
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=65.41 E-value=17 Score=35.72 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCEEEcCCeEEEEEEeCC-eEEEEEccC-----cEEEeCEEEEecCc
Q 015167 93 NDIILNDSNVIDFMDHGD-KVSVMLENG-----QCYAGDVLVGADGI 133 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~-~v~v~~~dG-----~~~~adllVgADG~ 133 (412)
...++-+++|++++..++ ++.+++.+. .++++|+||.|=|-
T Consensus 293 ~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 293 RLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp -SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred CeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 578888999999999885 899999862 36899999999773
No 173
>PRK06370 mercuric reductase; Validated
Probab=65.15 E-value=25 Score=35.90 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=40.9
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc--c-CcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLE--N-GQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~--d-G~~~~adllVgADG~~S~vr 138 (412)
+.+.|.+.+ .++++++++++++++.+++++.+.+. + +.++.+|.||-|=|......
T Consensus 214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~ 274 (463)
T PRK06370 214 VAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD 274 (463)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence 444555555 47899999999999887666555543 3 45799999999999876553
No 174
>PRK14694 putative mercuric reductase; Provisional
Probab=63.95 E-value=26 Score=35.94 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=42.4
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.+...+.+.+ .++.++.++++++++.+++.+.+.+.+ .++.+|+||-|=|....+.
T Consensus 219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~~ 276 (468)
T PRK14694 219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNTE 276 (468)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCcC
Confidence 4455555555 478999999999998776666666654 4699999999999987663
No 175
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=63.75 E-value=26 Score=35.85 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=45.9
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~--~~~adllVgADG~~S~v 137 (412)
.++.+.|.+.+ .++.++.+++++.++..++++.+++++|. ++++|.|+-|=|..-.+
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 44555555555 46789999999999988877999999887 68999999999987666
No 176
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.33 E-value=26 Score=37.10 Aligned_cols=57 Identities=12% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-E---EEccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-V---MLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v---~~~dG~--~~~adllVgADG~~S~v 137 (412)
..+...|.+.+ .+++++.++.++++..+++.|. + ...+|+ .+.|+.||.|.|..+.+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~~ 199 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGRV 199 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcCC
Confidence 35666676665 4789999999999987665432 2 334665 58999999999998864
No 177
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=62.85 E-value=27 Score=35.81 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHhhc-CCCEEEcCCeEEEEEEeCCeEEEEEccC----cEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV-GNDIILNDSNVIDFMDHGDKVSVMLENG----QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l-~~~~i~~~~~v~~i~~~~~~v~v~~~dG----~~~~adllVgADG~~S~vr 138 (412)
+.+.+.+.+ ..+.++.+++++.++..++++.+++.++ +++.+|.||-|-|....+.
T Consensus 217 ~~~~~~~~l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 217 IVKVFTKRIKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (471)
T ss_pred HHHHHHHHHhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCC
Confidence 344455544 2378899999999987777777877653 3699999999999987763
No 178
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=61.19 E-value=11 Score=26.33 Aligned_cols=32 Identities=16% Similarity=0.381 Sum_probs=25.5
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEE
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYA 123 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~ 123 (412)
|+..+.|..+|++++...+..+|.+.||++++
T Consensus 17 P~s~lYYe~kV~~~d~~~~~y~V~Y~DGtel~ 48 (55)
T PF09465_consen 17 PGSSLYYEGKVLSYDSKSDRYTVLYEDGTELE 48 (55)
T ss_dssp TTTS-EEEEEEEEEETTTTEEEEEETTS-EEE
T ss_pred CCCCcEEEEEEEEecccCceEEEEEcCCCEEE
Confidence 56667788999999998899999999998753
No 179
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=61.03 E-value=31 Score=34.91 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=41.4
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.+...+.+.+ .+++++.++++++++.+++.+.++ .+|+++.+|.||-|=|....+
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~-~~g~~i~~D~viva~G~~p~~ 255 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVV-TEDETYRFDALLYATGRKPNT 255 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEE-ECCeEEEcCEEEEeeCCCCCc
Confidence 4444554444 378999999999998766666555 467789999999999987655
No 180
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=60.45 E-value=35 Score=34.49 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=40.0
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+.+.|.+.+ .++++++++++++++.++....+.+ ++.++.+|+||.|=|.......+
T Consensus 192 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~-~~~~i~~d~vi~a~G~~p~~~~l 251 (444)
T PRK09564 192 EITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVT-DKGEYEADVVIVATGVKPNTEFL 251 (444)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe-CCCEEEcCEEEECcCCCcCHHHH
Confidence 4445555555 3689999999999965433333444 55579999999999987655433
No 181
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=60.34 E-value=27 Score=35.50 Aligned_cols=54 Identities=9% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
+...+.+.+ .++.+++++++++++. . .+++++|+++.+|+||-|-|.+.....+
T Consensus 191 ~~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l 246 (438)
T PRK13512 191 MNQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFI 246 (438)
T ss_pred HHHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHH
Confidence 344444444 3789999999999863 2 4677889899999999999987665433
No 182
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=60.03 E-value=36 Score=36.48 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=44.8
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeC--CeEE-EEE---ccCc--EEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHG--DKVS-VML---ENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~--~~v~-v~~---~dG~--~~~adllVgADG~~S~v 137 (412)
.++-..|...|.+.+ .+++++.+++|+++..++ +++. |++ .+++ ++.||.||-|.|.+|.-
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 456677777777776 478899999999998763 4432 343 2343 58999999999999865
No 183
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=59.39 E-value=38 Score=35.01 Aligned_cols=56 Identities=13% Similarity=-0.047 Sum_probs=42.0
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCc---EEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQ---CYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~---~~~adllVgADG~~S~vr 138 (412)
+.+.+.+.+ .++.++.+++++.++..++.+.+++.+++ ++.+|.||-|=|....+.
T Consensus 222 ~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 222 CANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 334444444 37899999999999877667778887763 799999999999865553
No 184
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.34 E-value=24 Score=34.58 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=33.6
Q ss_pred CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 92 GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
.+++++.++++++++. + .+++.+|+++.+|+||-|=|....
T Consensus 204 ~gV~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 204 RGIEVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred CCCEEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCChh
Confidence 3789999999998853 2 467789999999999999997643
No 185
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=59.32 E-value=46 Score=34.58 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=41.0
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeE---EEEEccCc--EEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKV---SVMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v---~v~~~dG~--~~~adllVgADG~~S~v 137 (412)
.+...|.+.+ .+++++++++++++..++++| .+...+++ ++.++.||-|.|..+.-
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccC
Confidence 4556666655 478899999999998766543 34334543 58999999999987766
No 186
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=59.15 E-value=28 Score=36.82 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-E---EEccCc--EEEeCEEEEecCcCchh
Q 015167 83 LQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-V---MLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v---~~~dG~--~~~adllVgADG~~S~v 137 (412)
+.+.|.+.+ +++.+++++.++++..+++.+. + ...+|+ .+.|+.||-|.|..+.+
T Consensus 139 i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (577)
T PRK06069 139 IMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAGRL 202 (577)
T ss_pred HHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhccc
Confidence 556666654 4688999999999987666442 2 234665 58999999999998765
No 187
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=58.70 E-value=32 Score=36.58 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=46.0
Q ss_pred EEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEe-CCe-EEEEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV---GNDIILNDSNVIDFMDH-GDK-VSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~-~~~-v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.+++..+...|.+.+ +++.++ ..+++++..+ ++. +.|...+|..+.|+.||-|-|..+.-
T Consensus 92 QVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g 156 (617)
T TIGR00136 92 QIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRG 156 (617)
T ss_pred hCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCC
Confidence 678888888887776 567776 4477777654 443 45778889899999999999998644
No 188
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=57.83 E-value=46 Score=34.58 Aligned_cols=61 Identities=21% Similarity=0.402 Sum_probs=45.9
Q ss_pred EEeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc---cCc--EEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE---NGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~---dG~--~~~adllVgADG~~S~v 137 (412)
.++-..|...|...+ .++.++.+++|++++.+++++. |++. +|+ ++.|+.||-|=|.+|.-
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 566677777776665 4788999999999998777643 4443 342 68999999999998765
No 189
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=57.73 E-value=40 Score=34.35 Aligned_cols=56 Identities=18% Similarity=0.217 Sum_probs=39.7
Q ss_pred HHHHHHhhcC-CCEEEcCCeEEEEEEeCC-eEEEEEccC--cEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAVG-NDIILNDSNVIDFMDHGD-KVSVMLENG--QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l~-~~~i~~~~~v~~i~~~~~-~v~v~~~dG--~~~~adllVgADG~~S~vr 138 (412)
+.+.+.+.+. .+.+++++++++++.+++ .+++++.++ +++.+|+||.|-|....+.
T Consensus 212 ~~~~~~~~l~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 212 VSKQAQKILSKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred HHHHHHHHHhhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 4445555551 288999999999987654 566555444 4699999999999876553
No 190
>PRK14727 putative mercuric reductase; Provisional
Probab=57.50 E-value=41 Score=34.58 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
+...|.+.+ .+++++.+++++.++.+++++.+.+.++ ++.+|.||-|=|....+.
T Consensus 230 ~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~ 286 (479)
T PRK14727 230 LGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTH 286 (479)
T ss_pred HHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCcc
Confidence 344455555 3788999999999987777777776665 589999999999987663
No 191
>PRK08401 L-aspartate oxidase; Provisional
Probab=57.24 E-value=38 Score=34.77 Aligned_cols=56 Identities=16% Similarity=0.081 Sum_probs=40.8
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
..+.+.|.+.+ .+++++.+ .++.+..+++++.-...++..+.++-||-|-|..|..
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGELLKFDATVIATGGFSGL 177 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCcCC
Confidence 35667777766 46777765 7888876655554333367789999999999999976
No 192
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=55.58 E-value=32 Score=34.94 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=36.2
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-E-EEEEccCc-----EEEeCEEEEecCcCc
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDK-V-SVMLENGQ-----CYAGDVLVGADGIWS 135 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v-~v~~~dG~-----~~~adllVgADG~~S 135 (412)
|-+.|.+.+ .+++|+.++.|++|+.++++ + .+++.+|+ ++.||-||-|=..+.
T Consensus 215 l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~ 276 (453)
T TIGR02731 215 LCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDI 276 (453)
T ss_pred HHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHH
Confidence 344444444 26789999999999865544 4 36666665 788888888765543
No 193
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=55.49 E-value=40 Score=34.38 Aligned_cols=57 Identities=16% Similarity=0.068 Sum_probs=41.4
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEE--ccC--cEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VML--ENG--QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~--~dG--~~~~adllVgADG~~S~v 137 (412)
..|...|.+.+ .+++++++++++++..++++|. +.. .++ ..+.++.||-|.|..+.-
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~~n 194 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFESN 194 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCCCC
Confidence 45666676665 4789999999999987666554 333 234 357899999999987655
No 194
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=55.42 E-value=25 Score=35.85 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=41.6
Q ss_pred CCCEEEcCCeEEEEEEeCCe--EEEEEccCcEEEeCEEEEecCcCchhHHH
Q 015167 92 GNDIILNDSNVIDFMDHGDK--VSVMLENGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~--v~v~~~dG~~~~adllVgADG~~S~vr~~ 140 (412)
.++++..++.+++++.++++ ..|.+.||+++.||+||-.=|+.+.+..+
T Consensus 268 kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~ 318 (478)
T KOG1336|consen 268 KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL 318 (478)
T ss_pred cCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccccc
Confidence 36889999999999987743 56889999999999999999998877443
No 195
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=53.67 E-value=58 Score=33.05 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=42.8
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEE-ccCc--EEEeCEEEEecCcC
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVML-ENGQ--CYAGDVLVGADGIW 134 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~-~dG~--~~~adllVgADG~~ 134 (412)
+.-..|.+.|.+.+ .+++++.+++|++++..++++.+.. .+|+ .+++|.||-|=|..
T Consensus 256 lpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf 317 (422)
T PRK05329 256 VPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF 317 (422)
T ss_pred CchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence 33446778887777 4788999999999998777766543 3453 58999999998864
No 196
>PRK06175 L-aspartate oxidase; Provisional
Probab=52.77 E-value=52 Score=33.40 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=40.2
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EE-EccCc--EEEeCEEEEecCcCch
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VM-LENGQ--CYAGDVLVGADGIWSK 136 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~-~~dG~--~~~adllVgADG~~S~ 136 (412)
..+.+.|.+.+ .+++++++++++++..+++++. +. ..++. .+.|+-||-|-|..+.
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~~ 190 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIGG 190 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcccc
Confidence 34666676655 3789999999999987666432 22 33554 5899999999999664
No 197
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=51.66 E-value=15 Score=39.56 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=41.9
Q ss_pred CccchhhHHHHHhhcccCCchhhhhccCC----ceEEEEcCCCCCccccEEeeccCCCCCEEecCCCCCCCC
Q 015167 245 PCCRLSDKASDQLRTWLRDNDALERAMNG----EWLLVPSGSETVVSQPIYLSRSDENEPYLIGSESQEDFP 312 (412)
Q Consensus 245 ~~~~~~~~~~~~~~~W~p~~~~l~~a~~~----~w~l~~~~~~~~~~~~i~l~~~~~~~~~~iGR~~~~~~~ 312 (412)
..+..++.+++.|.+|++.+..++..++. .|.++.... +.+|..++.+++|.+.+..+|
T Consensus 319 ~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p---------~~~W~~grVvLiGDAAH~~~P 381 (668)
T PLN02927 319 APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSP---------GFTWGKGRVTLLGDSIHAMQP 381 (668)
T ss_pred cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccC---------CCccccCcEEEEcCccCCCCC
Confidence 34556788899999999888888776643 244443221 234556789999999999888
No 198
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=51.27 E-value=55 Score=33.03 Aligned_cols=58 Identities=14% Similarity=-0.038 Sum_probs=42.0
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEe--CCeEE-EEEc-cCcEEEeCEEEEecCcCchhH
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDH--GDKVS-VMLE-NGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~--~~~v~-v~~~-dG~~~~adllVgADG~~S~vr 138 (412)
..|.+.|.+.+ .+++++++++++++..+ ++.+. +... ++..+.|+-||-|-|..+.-+
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCH
Confidence 34667776666 47899999999999876 33443 3333 335789999999999887763
No 199
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=49.90 E-value=29 Score=35.41 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=36.4
Q ss_pred HHHHHHHHhhcCCCE--------EEcCCeEEEEEEeC-CeEEEEEccCcEEEeCEEEEe
Q 015167 81 MTLQQILAHAVGNDI--------ILNDSNVIDFMDHG-DKVSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 81 ~~L~~~L~~~l~~~~--------i~~~~~v~~i~~~~-~~v~v~~~dG~~~~adllVgA 130 (412)
..+.+.|...+|... ++++++|..++..+ +.|.|++.||+.+.||.||.-
T Consensus 223 ~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~adhVIvT 281 (498)
T KOG0685|consen 223 KRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHADHVIVT 281 (498)
T ss_pred HHHHHHHhccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEeccEEEEE
Confidence 344455555554333 44459999998775 569999999999999999963
No 200
>PRK13748 putative mercuric reductase; Provisional
Probab=49.40 E-value=65 Score=33.79 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=41.6
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
++...|.+.+ .++.++.+++++.++.+++.+.+.+.++ ++.+|.||-|=|....+
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 3444555555 4789999999999987766777776655 69999999999987655
No 201
>PRK07208 hypothetical protein; Provisional
Probab=49.13 E-value=51 Score=33.70 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=35.6
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeE-E-EEEc--cCc--EEEeCEEEEecCc
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKV-S-VMLE--NGQ--CYAGDVLVGADGI 133 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v-~-v~~~--dG~--~~~adllVgADG~ 133 (412)
.|-+.|.+.+ .+++|+++++|++++.+++++ . ++.. +|+ ++.||.||.|=-.
T Consensus 219 ~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 219 QLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred hHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 4556666666 367899999999999887753 2 3332 353 5788888876433
No 202
>PRK10262 thioredoxin reductase; Provisional
Probab=47.68 E-value=68 Score=30.78 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=40.3
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeE-EEEEccC------cEEEeCEEEEecCcCchhHH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKV-SVMLENG------QCYAGDVLVGADGIWSKMNL 139 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v-~v~~~dG------~~~~adllVgADG~~S~vr~ 139 (412)
+...+.+.+ .+++++.++++++++.++.++ .|++.++ +++.+|.||-|=|......+
T Consensus 187 ~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l 252 (321)
T PRK10262 187 LIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAI 252 (321)
T ss_pred HHHHHHhhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhH
Confidence 455566655 378899999999998765433 3555542 36999999999998765543
No 203
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=46.19 E-value=85 Score=32.12 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEe-CCeEE-EEEccCc--EEEeCEEEEecCcCchh
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDH-GDKVS-VMLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~-~~~v~-v~~~dG~--~~~adllVgADG~~S~v 137 (412)
+.+.|.+.+ .+++++.++++++++.. ++++. +.+.+|+ ++.+|+||.|=|....+
T Consensus 223 ~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 223 LSKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HHHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 334444444 37899999999999752 34443 4456774 69999999999987554
No 204
>PTZ00058 glutathione reductase; Provisional
Probab=45.28 E-value=76 Score=33.51 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCC-eEEEEEccC-cEEEeCEEEEecCcCchhH
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGD-KVSVMLENG-QCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~v~v~~~dG-~~~~adllVgADG~~S~vr 138 (412)
+.+.+.+.+ .++.++.++++.+++.+++ ++.+.+.++ +++.+|.||-|=|....+.
T Consensus 280 i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~ 339 (561)
T PTZ00058 280 IINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTE 339 (561)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCcc
Confidence 444455555 4789999999999987644 566666555 4799999999999876653
No 205
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=43.34 E-value=18 Score=26.26 Aligned_cols=32 Identities=13% Similarity=0.383 Sum_probs=17.6
Q ss_pred cceeeeCcCCceeecCCCCcEEeCCCCEEEECCCCceEEEE
Q 015167 346 HGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSDKKATFQV 386 (412)
Q Consensus 346 nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~~~~~f~~ 386 (412)
+..+|||. +......+|++||+|.|+.. .|++
T Consensus 33 g~V~VNGe------~e~rrg~Kl~~GD~V~~~~~---~~~V 64 (65)
T PF13275_consen 33 GEVKVNGE------VETRRGKKLRPGDVVEIDGE---EYRV 64 (65)
T ss_dssp HHHEETTB----------SS----SSEEEEETTE---EEEE
T ss_pred CceEECCE------EccccCCcCCCCCEEEECCE---EEEE
Confidence 45788886 22234577999999999765 4554
No 206
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=43.08 E-value=83 Score=33.56 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=42.1
Q ss_pred eHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-E---EEccCc--EEEeCEEEEecCcCchh
Q 015167 79 SRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-V---MLENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 79 ~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v---~~~dG~--~~~adllVgADG~~S~v 137 (412)
.-..+.+.|.+.+ +++++++++.++++..+++.+. + ...+|+ .+.|+.||-|.|..+.+
T Consensus 130 ~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (608)
T PRK06854 130 NGESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAGI 197 (608)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhhc
Confidence 3445667777666 3589999999999976666432 2 233554 58999999999987753
No 207
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=41.33 E-value=1.2e+02 Score=28.35 Aligned_cols=48 Identities=23% Similarity=0.165 Sum_probs=34.6
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEc---cC--cEEEeCEEEEecCcCchhHHH
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLE---NG--QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~---dG--~~~~adllVgADG~~S~vr~~ 140 (412)
++.+++++++++++.++....+++. +| .++.+|+||-|-|.+....++
T Consensus 191 gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l 243 (300)
T TIGR01292 191 NIEFLWNSTVKEIVGDNKVEGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELL 243 (300)
T ss_pred CeEEEeccEEEEEEccCcEEEEEEEecCCCceEEEEccEEEEeeCCCCChHHH
Confidence 7889999999999865532335543 23 469999999999986655433
No 208
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.08 E-value=31 Score=26.60 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.9
Q ss_pred CEEEEEEcCCccce--eeeCcCCceeecCCCCcEEeCCCCEEEECC
Q 015167 335 GAFYLIDLRSEHGT--YITDNEGRRYRVSPNFPARFRPSNSIQFGS 378 (412)
Q Consensus 335 ~~~~i~Dl~S~nGt--~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~ 378 (412)
..+++++-.=..|+ -||+. .|+|-..+.++|.+||.|.|=+
T Consensus 49 ~sifie~g~lrpGiI~LINd~---DWeLleke~y~ledgDiIvfis 91 (96)
T COG5131 49 DSIFIEHGELRPGIICLINDM---DWELLEKERYPLEDGDIIVFIS 91 (96)
T ss_pred ceeeecCCCCcccEEEEEcCc---cHhhhhcccccCCCCCEEEEEe
Confidence 44777765556774 45765 7888888899999999998754
No 209
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=40.14 E-value=1e+02 Score=32.33 Aligned_cols=61 Identities=28% Similarity=0.264 Sum_probs=45.8
Q ss_pred EEeHHHHHHHHHhhc---C-CCEEEcCCeEEEEEEeCC-----eEEEEEcc-Cc--EEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV---G-NDIILNDSNVIDFMDHGD-----KVSVMLEN-GQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l---~-~~~i~~~~~v~~i~~~~~-----~v~v~~~d-G~--~~~adllVgADG~~S~v 137 (412)
-.++..+.+-|.+-+ . ...|+|+++|++++..++ ...|+..+ |+ +..+|.||.|=|.+|.=
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P 152 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKP 152 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCE
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCC
Confidence 478999999998776 2 346899999999998653 56777754 43 46799999999998744
No 210
>PRK07121 hypothetical protein; Validated
Probab=39.39 E-value=1.2e+02 Score=31.21 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=40.9
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCC-eEE-EEEc-cCc--EEEe-CEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGD-KVS-VMLE-NGQ--CYAG-DVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~-~v~-v~~~-dG~--~~~a-dllVgADG~~S~v 137 (412)
..+.+.|.+.+ .+++++++++++++..+++ ++. |.+. +++ .+.| +.||-|.|..+.=
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N 241 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMN 241 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcC
Confidence 45667777766 4789999999999987643 332 3333 333 4788 9999999987754
No 211
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=38.62 E-value=27 Score=27.32 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=20.8
Q ss_pred eeeeCcCCceeecCCCCcEEeCCCCEEEECC
Q 015167 348 TYITDNEGRRYRVSPNFPARFRPSNSIQFGS 378 (412)
Q Consensus 348 t~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~ 378 (412)
.+||+. .+++..+..++|++||.|.|=+
T Consensus 62 VlvN~~---di~~l~g~~t~L~dgD~v~i~P 89 (94)
T cd01764 62 VLINDT---DWELLGEEDYILEDGDHVVFIS 89 (94)
T ss_pred EEECCc---cccccCCcccCCCCcCEEEEEC
Confidence 667876 3455567789999999998744
No 212
>PLN02546 glutathione reductase
Probab=38.59 E-value=1e+02 Score=32.47 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=35.9
Q ss_pred CCCEEEcCCeEEEEEEeC-CeEEEEEccCcEEEeCEEEEecCcCchhH
Q 015167 92 GNDIILNDSNVIDFMDHG-DKVSVMLENGQCYAGDVLVGADGIWSKMN 138 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~-~~v~v~~~dG~~~~adllVgADG~~S~vr 138 (412)
.+++++.++++++++..+ +.+.+.+.+++...+|.||-|=|....+.
T Consensus 306 ~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~ 353 (558)
T PLN02546 306 RGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK 353 (558)
T ss_pred CCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence 478999999999998654 34566666665556899999999987764
No 213
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=38.50 E-value=1.2e+02 Score=31.52 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EEE-ccCc--EEEeC--EEEEecCcCchh
Q 015167 83 LQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VML-ENGQ--CYAGD--VLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~~-~dG~--~~~ad--llVgADG~~S~v 137 (412)
|...|.+.+ ++++++++++++++..+++.|. |.. .+|+ .+.|+ +|++|+|.....
T Consensus 175 l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~ 238 (513)
T PRK12837 175 LIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQND 238 (513)
T ss_pred HHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCH
Confidence 444444443 4789999999999987766443 222 3443 47886 899999875443
No 214
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=37.64 E-value=1.2e+02 Score=30.11 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=41.1
Q ss_pred eHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc---cCc--EEEeCEEEEecCcCch
Q 015167 79 SRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE---NGQ--CYAGDVLVGADGIWSK 136 (412)
Q Consensus 79 ~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~---dG~--~~~adllVgADG~~S~ 136 (412)
.-..+...|.+.+ .+++++++++++++..++++|+ +.+. +|+ .+.|+-||-|-|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 4566777777776 3689999999999999887654 4433 565 4789999999999885
No 215
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=37.53 E-value=1.4e+02 Score=31.62 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=36.6
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEE--ccCc-EEEe-CEEEEecCcCchh
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VML--ENGQ-CYAG-DVLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~--~dG~-~~~a-dllVgADG~~S~v 137 (412)
|...|.+.+ .+++++++++|+++..++++|. |.. .++. ++.| +.||-|=|..|.=
T Consensus 219 l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n 280 (581)
T PRK06134 219 LVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHD 280 (581)
T ss_pred HHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccC
Confidence 445666655 4789999999999887666543 333 3443 4788 8777777766643
No 216
>PRK09077 L-aspartate oxidase; Provisional
Probab=35.67 E-value=98 Score=32.39 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=41.2
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeC------CeEE-EEE---ccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHG------DKVS-VML---ENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~------~~v~-v~~---~dG~--~~~adllVgADG~~S~v 137 (412)
..+...|.+.+ ++++++.++.++++..++ +.|. |.+ .+|+ .+.|+.||.|.|..+.+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~~~ 209 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGASKV 209 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCCCC
Confidence 35677777765 578999999999887543 4433 333 2454 48999999999999865
No 217
>PRK08071 L-aspartate oxidase; Provisional
Probab=35.59 E-value=99 Score=32.16 Aligned_cols=56 Identities=21% Similarity=0.318 Sum_probs=40.4
Q ss_pred HHHHHHHhhc-CCCEEEcCCeEEEEEEeCCeEE-EEEc--cCc--EEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV-GNDIILNDSNVIDFMDHGDKVS-VMLE--NGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l-~~~~i~~~~~v~~i~~~~~~v~-v~~~--dG~--~~~adllVgADG~~S~v 137 (412)
.+.+.|.+.+ .+++++.++.++++..+++.+. +... +|+ .+.|+.||-|-|..+.+
T Consensus 131 ~i~~~L~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~~ 192 (510)
T PRK08071 131 NLLEHLLQELVPHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGGL 192 (510)
T ss_pred HHHHHHHHHHhcCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCccc
Confidence 4666676665 5789999999999876665443 3333 343 58899999999998753
No 218
>PRK08275 putative oxidoreductase; Provisional
Probab=34.89 E-value=1.2e+02 Score=31.91 Aligned_cols=56 Identities=11% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEe-CCeEE-EE---EccCc--EEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDH-GDKVS-VM---LENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~-~~~v~-v~---~~dG~--~~~adllVgADG~~S~v 137 (412)
.+.+.|.+.+ .++++++++.++++..+ ++.+. +. ..+|+ .+.|+.||-|-|..+.+
T Consensus 138 ~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 138 DIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred HHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcccc
Confidence 4667777766 47899999999999876 44332 22 23565 47899999999997754
No 219
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=34.82 E-value=24 Score=33.52 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=14.8
Q ss_pred eCEEEEecCcCchhHHH
Q 015167 124 GDVLVGADGIWSKMNLL 140 (412)
Q Consensus 124 adllVgADG~~S~vr~~ 140 (412)
|.|+|.|||..|..|..
T Consensus 2 A~LtivaDG~~S~fRk~ 18 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKE 18 (276)
T ss_pred CCEEEEecCCchHHHHh
Confidence 78999999999999544
No 220
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=34.03 E-value=1.5e+02 Score=30.76 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=36.8
Q ss_pred CCCEEEcCCeEEEEEEeCCeEE-EEEccC-----cEEEeCEEEEecCcCchhHHH
Q 015167 92 GNDIILNDSNVIDFMDHGDKVS-VMLENG-----QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~-v~~~dG-----~~~~adllVgADG~~S~vr~~ 140 (412)
.++.+++++++++++.+++++. |++.++ +++.+|.||.|=|......++
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l 455 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL 455 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH
Confidence 3789999999999987655554 666543 368999999999987655433
No 221
>PRK11507 ribosome-associated protein; Provisional
Probab=33.24 E-value=61 Score=23.93 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=19.7
Q ss_pred cceeeeCcCCceeecCCCCcEEeCCCCEEEECCC
Q 015167 346 HGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSD 379 (412)
Q Consensus 346 nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~ 379 (412)
+-..|||. +......+|++||+|.|...
T Consensus 37 g~V~VNGe------ve~rRgkKl~~GD~V~~~g~ 64 (70)
T PRK11507 37 GQVKVDGA------VETRKRCKIVAGQTVSFAGH 64 (70)
T ss_pred CceEECCE------EecccCCCCCCCCEEEECCE
Confidence 45778875 22223467999999999985
No 222
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=32.91 E-value=1.8e+02 Score=30.66 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=36.0
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc-cCc--EEEeC--EEEEecCcCchh
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE-NGQ--CYAGD--VLVGADGIWSKM 137 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~-dG~--~~~ad--llVgADG~~S~v 137 (412)
+...|.+.+ .+++++++++++++..++++|. |... +|+ .+.|+ +|+++-|..+.-
T Consensus 210 ~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~ 272 (557)
T PRK07843 210 LAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNE 272 (557)
T ss_pred HHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCH
Confidence 445555555 4789999999999988766543 3332 454 47784 667677765533
No 223
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=32.29 E-value=1.5e+02 Score=29.04 Aligned_cols=60 Identities=28% Similarity=0.353 Sum_probs=44.7
Q ss_pred EEeHHHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 77 VISRMTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 77 ~i~r~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
.++-..+.+.|.+.+ +...+..++.+..++.....+.|...+|+ +.||-||-|-|.+|..
T Consensus 152 ~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 152 HLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGE 214 (387)
T ss_pred cCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHH
Confidence 456667777777766 23567778888888875334567777776 9999999999998766
No 224
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=31.70 E-value=1.5e+02 Score=29.10 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=44.3
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE---EEEccCcEEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS---VMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~---v~~~dG~~~~adllVgADG~~S~v 137 (412)
..+...+.+.+ .++.++++.++.+++...+.+. +...++..+.+|+++.+-|.+-.+
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~ 239 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV 239 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH
Confidence 45566666665 2588999999999998766543 678889999999999999986544
No 225
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.38 E-value=1.3e+02 Score=30.23 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=36.7
Q ss_pred CCCEEEcCCeEEEEEEeCCe-EEEEEccC-----cEEEeCEEEEecCcCchh
Q 015167 92 GNDIILNDSNVIDFMDHGDK-VSVMLENG-----QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~-v~v~~~dG-----~~~~adllVgADG~~S~v 137 (412)
+.+.++-+++|++++..+++ +.+++... .+++.|.||-|=|-+=.+
T Consensus 291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~ 342 (436)
T COG3486 291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAV 342 (436)
T ss_pred CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCC
Confidence 46788889999999998876 77766532 368999999999988444
No 226
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=31.35 E-value=1.9e+02 Score=29.16 Aligned_cols=46 Identities=22% Similarity=0.179 Sum_probs=37.7
Q ss_pred CCCEEEcCCeEEEEEEeCC-eEEEEEccC-----cEEEeCEEEEecCcCchh
Q 015167 92 GNDIILNDSNVIDFMDHGD-KVSVMLENG-----QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~-~v~v~~~dG-----~~~~adllVgADG~~S~v 137 (412)
.++.++.+++|+..+..++ .+.+++.|- ++++||.|..|=|.+-.+
T Consensus 265 QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 265 QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred cCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence 4688999999999999887 677877753 369999999999987555
No 227
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=31.21 E-value=41 Score=32.03 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCCEEEcCCeEEEEEEeCCeEEEEEccCcE-EEeCEEEEec
Q 015167 80 RMTLQQILAHAVGNDIILNDSNVIDFMDHGDKVSVMLENGQC-YAGDVLVGAD 131 (412)
Q Consensus 80 r~~L~~~L~~~l~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~-~~adllVgAD 131 (412)
.+.|-+.|..- .+|.++++|+.+...++..+++.++|+. ..+|.||-|=
T Consensus 107 msalak~LAtd---L~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~ 156 (331)
T COG3380 107 MSALAKFLATD---LTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAI 156 (331)
T ss_pred hHHHHHHHhcc---chhhhhhhhhhheecCCeeEEEecCCCcccccceEEEec
Confidence 34555555554 4678899999999988899999988764 6788777663
No 228
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=31.14 E-value=91 Score=23.23 Aligned_cols=33 Identities=6% Similarity=0.228 Sum_probs=23.9
Q ss_pred EEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEECCC
Q 015167 337 FYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSD 379 (412)
Q Consensus 337 ~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~ 379 (412)
++|.| +..+|||. +......+|++||.|.|.+.
T Consensus 32 ~~i~e----g~V~vNGe------~EtRRgkKlr~gd~V~i~~~ 64 (73)
T COG2501 32 AFIAE----GEVKVNGE------VETRRGKKLRDGDVVEIPGQ 64 (73)
T ss_pred HHHHC----CeEEECCe------eeeccCCEeecCCEEEECCE
Confidence 55554 56899996 22233577999999999986
No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=30.94 E-value=1.1e+02 Score=30.96 Aligned_cols=45 Identities=16% Similarity=0.198 Sum_probs=34.8
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEE-ccCcEEE--eCEEEEecCcCchh
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVML-ENGQCYA--GDVLVGADGIWSKM 137 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~-~dG~~~~--adllVgADG~~S~v 137 (412)
+++++.+++|++++.++..+.+.- .+|++++ +|.||-|=|.+...
T Consensus 70 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~ 117 (444)
T PRK09564 70 GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPII 117 (444)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCC
Confidence 678888999999988777766653 2356666 99999999997543
No 230
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=30.84 E-value=1.2e+02 Score=30.65 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=35.2
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCc-EEEeCEEEEecCcC-chh-HH
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQ-CYAGDVLVGADGIW-SKM-NL 139 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~-~~~adllVgADG~~-S~v-r~ 139 (412)
++.++.++.|++++.+. |++.+|. .+.++.+|-|=|++ |++ +.
T Consensus 223 GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 223 GVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred CCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhh
Confidence 79999999999997643 6677787 49999999999995 555 54
No 231
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=30.44 E-value=1.6e+02 Score=30.21 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred HHHHhhc--CCCEEEcCCeEEEEEEeC--Ce---E-EEEEccC---cEEEeCEEEEecCcCchhHHH
Q 015167 85 QILAHAV--GNDIILNDSNVIDFMDHG--DK---V-SVMLENG---QCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 85 ~~L~~~l--~~~~i~~~~~v~~i~~~~--~~---v-~v~~~dG---~~~~adllVgADG~~S~vr~~ 140 (412)
+.|.+.+ .+.+|+.+++|++++.++ ++ + .|.+.+| +++.||.||-|=..+..-+++
T Consensus 223 ~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 223 KPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhC
Confidence 3344444 478899999999998754 22 3 2345544 458899988887776443544
No 232
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.11 E-value=55 Score=25.45 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.7
Q ss_pred EEEEEEcCCccce--eeeCcCCceeecCCCCcEEeCCCCEEEECC
Q 015167 336 AFYLIDLRSEHGT--YITDNEGRRYRVSPNFPARFRPSNSIQFGS 378 (412)
Q Consensus 336 ~~~i~Dl~S~nGt--~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~ 378 (412)
.+++.+-.-+.|+ -||+. .|.|.....++|++||.|.|=+
T Consensus 55 ~lFi~~gsvrpGii~lINd~---DWEllekedy~ledgD~ivfiS 96 (101)
T KOG4146|consen 55 SLFIHHGSVRPGIIVLINDM---DWELLEKEDYPLEDGDHIVFIS 96 (101)
T ss_pred ceEeeCCcCcCcEEEEEecc---chhhhcccccCcccCCEEEEEE
Confidence 3777765567785 45765 6778778899999999998743
No 233
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.80 E-value=1.5e+02 Score=31.14 Aligned_cols=57 Identities=16% Similarity=0.164 Sum_probs=41.3
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EE-EEE---ccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VS-VML---ENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~-v~~---~dG~--~~~adllVgADG~~S~v 137 (412)
..+...|.+.+ .++++++++.++++..++++ |. +.. .+|+ .+.|+-||-|-|..+..
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~~ 199 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAGQL 199 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCCCC
Confidence 34666676665 57899999999999876554 43 222 4565 48999999999998753
No 234
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=29.39 E-value=2e+02 Score=30.92 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=38.1
Q ss_pred HHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc---cCc--EEEeCEEEEecCcCchh
Q 015167 85 QILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE---NGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 85 ~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~---dG~--~~~adllVgADG~~S~v 137 (412)
+.|.+.+ .++++++++.++++..+++.|. |... +|+ .+.|+.||-|-|..+.+
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~~ 234 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGNV 234 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCcccC
Confidence 4454444 4789999999999987666543 3332 454 58899999999997654
No 235
>PF10387 DUF2442: Protein of unknown function (DUF2442); InterPro: IPR018841 Several proteins in this entry are annotated as being putative molybdopterin-guanine dinucleotide biosynthesis proteins, but this has not been confirmed. The function of these proteins is therefore not known. ; PDB: 2AUW_B 2X8N_A 3K8R_B.
Probab=28.75 E-value=84 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=17.0
Q ss_pred EEEEEEeCC-eEEEEEccCcEEEeCE
Q 015167 102 VIDFMDHGD-KVSVMLENGQCYAGDV 126 (412)
Q Consensus 102 v~~i~~~~~-~v~v~~~dG~~~~adl 126 (412)
|+++...++ .+.|+|+||++...|+
T Consensus 1 i~~V~~~~~~~L~v~f~dG~~~~~dl 26 (79)
T PF10387_consen 1 IISVKPLDDYRLRVTFSDGETRIFDL 26 (79)
T ss_dssp -EEEEEETTTEEEEEETTS-EEEEEC
T ss_pred CeEEEEcCCcEEEEEEcCCCEEEEEh
Confidence 356666666 7899999998766553
No 236
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=28.55 E-value=1.9e+02 Score=30.01 Aligned_cols=49 Identities=18% Similarity=0.303 Sum_probs=37.1
Q ss_pred CCCEEEcCCeEEEEEEeCCeEE-EEEcc---Cc--EEEeCEEEEecCcCchhHHH
Q 015167 92 GNDIILNDSNVIDFMDHGDKVS-VMLEN---GQ--CYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v~-v~~~d---G~--~~~adllVgADG~~S~vr~~ 140 (412)
+++.+++++++++++.+++.+. +++.+ |+ ++.+|.|+-|-|....+.++
T Consensus 400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l 454 (517)
T PRK15317 400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL 454 (517)
T ss_pred CCcEEEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH
Confidence 4789999999999987655543 56653 33 58999999999997655443
No 237
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=28.16 E-value=1.3e+02 Score=30.04 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=34.9
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
+++++.+++|+.++.+.. .+++++|+++.+|.||-|=|++..
T Consensus 72 ~i~~~~g~~V~~id~~~~--~v~~~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 72 NVHLHSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred CCEEEcCCEEEEEECCCC--EEEECCCCEEEcCEEEEccCCCCC
Confidence 688889999999977543 466688999999999999999753
No 238
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=26.74 E-value=2.2e+02 Score=30.16 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=40.8
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeC----CeEE-EE---EccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHG----DKVS-VM---LENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~----~~v~-v~---~~dG~--~~~adllVgADG~~S~v 137 (412)
..+.+.|.+.+ .+++++.++.++++..++ +.+. +. ..+|+ .+.|+-||-|-|..+.+
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 208 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGRV 208 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCccc
Confidence 35667777766 478999999999987654 3332 22 24565 47899999999998754
No 239
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.21 E-value=2.3e+02 Score=27.37 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=43.9
Q ss_pred EeHHHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 78 ISRMTLQQILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 78 i~r~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
+.=..|.+.+.+.. .++.+.. ..+..++..++...|..++|+ ++|+.||-|=|+...-
T Consensus 58 ~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~ 117 (305)
T COG0492 58 ILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK 117 (305)
T ss_pred CchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC
Confidence 66677778787776 4666655 667777766556778888888 9999999999986543
No 240
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=26.02 E-value=3.2e+02 Score=28.94 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc-cCc--EEEe-CEEEEecCcCchhHHH
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE-NGQ--CYAG-DVLVGADGIWSKMNLL 140 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~-dG~--~~~a-dllVgADG~~S~vr~~ 140 (412)
.|...|.+.+ .+++++.+++++++..+++.|. |... +|+ .+.+ +-||-|=|..+.-..+
T Consensus 222 ~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em 287 (578)
T PRK12843 222 ALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQL 287 (578)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHH
Confidence 3556666666 4789999999999887666543 3333 443 4675 6777788887776333
No 241
>PRK07512 L-aspartate oxidase; Provisional
Probab=25.66 E-value=1.6e+02 Score=30.60 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=40.0
Q ss_pred HHHHHHHHhhc---CCCEEEcCCeEEEEEEeCCeEE-EEE-ccCc--EEEeCEEEEecCcCchh
Q 015167 81 MTLQQILAHAV---GNDIILNDSNVIDFMDHGDKVS-VML-ENGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 81 ~~L~~~L~~~l---~~~~i~~~~~v~~i~~~~~~v~-v~~-~dG~--~~~adllVgADG~~S~v 137 (412)
..+.+.|.+.+ ++++++.++.++++..+++.+. +.. .++. .+.|+-||-|-|..+..
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~~~ 199 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIGGL 199 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCcCC
Confidence 35667777665 3789999999999876555432 333 2333 58999999999997643
No 242
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=25.08 E-value=2.9e+02 Score=29.11 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=34.6
Q ss_pred HHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEE-ccCc--EEEeC--EEEEecCcCch
Q 015167 83 LQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VML-ENGQ--CYAGD--VLVGADGIWSK 136 (412)
Q Consensus 83 L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~-~dG~--~~~ad--llVgADG~~S~ 136 (412)
|...|.+.+ .+++++++++++++..+++.|+ |.. .+|+ .+.|+ +|+++-|....
T Consensus 210 l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N 271 (557)
T PRK12844 210 LIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGFGHN 271 (557)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCccCC
Confidence 445555555 4789999999999988766543 322 3554 37784 66666555443
No 243
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=24.25 E-value=59 Score=28.40 Aligned_cols=46 Identities=20% Similarity=0.188 Sum_probs=33.9
Q ss_pred CCCEEEcCCeEEEEEEeCCeE-----EE---EEccCcEEEeCEEEEecCcCchh
Q 015167 92 GNDIILNDSNVIDFMDHGDKV-----SV---MLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 92 ~~~~i~~~~~v~~i~~~~~~v-----~v---~~~dG~~~~adllVgADG~~S~v 137 (412)
.+++++.+.++.+++.....+ .+ ...++.++.+|.||-|-|.++..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~ 124 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT 124 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce
Confidence 367888889999998877642 22 22345679999999999987654
No 244
>PF08804 gp32: gp32 DNA binding protein like; InterPro: IPR012339 This entry is represented by the Bacteriophage T4, Gp32, single-stranded DNA-binding protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Gp32 is essential for T4 DNA replication, recombination and repair, acting to stimulate replisome processing and accuracy through its binding to ssDNA as the replication fork advances. The crystal structure of Gp32 shows an ssDNA binding cleft comprised of regions from three structural subdomains, through which ssDNA can slide freely []. The structure of Gp32 is similar to other phage ssDNA-binding proteins such as Gp2.5 from bacteriophage T4, and gene V protein, both of which have a nucleic acid-binding OB-type fold. However, Gp32 contains a zinc-finger subdomain at residues 63-111 that is not found in the other two phage proteins.; GO: 0003697 single-stranded DNA binding; PDB: 1GPC_A 2A1K_B 2ATQ_B.
Probab=24.09 E-value=70 Score=24.99 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=15.6
Q ss_pred EECCEEEEEEcCCccceeee
Q 015167 332 YKDGAFYLIDLRSEHGTYIT 351 (412)
Q Consensus 332 ~~~~~~~i~Dl~S~nGt~vn 351 (412)
-.+|+|||+.+-||.|.|=+
T Consensus 41 k~~g~WyiEN~~sT~G~~d~ 60 (94)
T PF08804_consen 41 KGNGGWYIENCPSTHGDYDS 60 (94)
T ss_dssp EETTEEEEEEEGGGGT-STT
T ss_pred cCCCcEEEecCccccCCCCC
Confidence 35688999999999999743
No 245
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=23.94 E-value=3.1e+02 Score=28.94 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=34.9
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc--cCc-EEEeC-EEEEecCcCch
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE--NGQ-CYAGD-VLVGADGIWSK 136 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~--dG~-~~~ad-llVgADG~~S~ 136 (412)
.|.+.|.+.+ .+++++++++|+++..+++.|+ |... ++. .+.++ -||-|=|..+.
T Consensus 215 ~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 215 ALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 3555565555 4789999999999987766543 4333 343 47785 45555555553
No 246
>cd04486 YhcR_OBF_like YhcR_OBF_like: A subfamily of OB-fold domains similar to the OB folds of Bacillus subtilis YhcR. YhcR is a sugar-nonspecific nuclease, which is active in the presence of Ca2+ and Mn2+. It cleaves RNA endonucleolytically, producing 3'-monophosphate nucleosides. YhcR appears to be the major Ca2+ activated nuclease of B. subtilis. YhcR may be localized in the cell wall.
Probab=23.93 E-value=1.3e+02 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=25.4
Q ss_pred CEEEEEEcC------CccceeeeCcCCceeecCCCCcEEeCCCCEEEECCC
Q 015167 335 GAFYLIDLR------SEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSD 379 (412)
Q Consensus 335 ~~~~i~Dl~------S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~ 379 (412)
+.|||.|.. .+.|.||-.. . ...++.||.|++-..
T Consensus 16 ~GffiQd~~~d~~~~ts~gifV~~~-----~-----~~~~~~Gd~V~vtG~ 56 (78)
T cd04486 16 GGFYIQDEDGDGDPATSEGIFVYTG-----S-----GADVAVGDLVRVTGT 56 (78)
T ss_pred CEEEEEcCCCCCCCcccceEEEecC-----C-----CCCCCCCCEEEEEEE
Confidence 679999973 2578888654 1 456889999998654
No 247
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=23.80 E-value=1.2e+02 Score=31.00 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=39.6
Q ss_pred HHHHHHHHhhc--CCCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEecCcC
Q 015167 81 MTLQQILAHAV--GNDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGADGIW 134 (412)
Q Consensus 81 ~~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgADG~~ 134 (412)
..+-.++.+.+ .+..|...+.|.+|.-+++. +-|.++||+.+++..||-=-+-+
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPW 320 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchH
Confidence 34445555555 36778899999999887765 45899999999999888544443
No 248
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=23.43 E-value=3.2e+02 Score=28.85 Aligned_cols=56 Identities=18% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHhhc--CCCEEEcCCeEEEEEEeCCeEE-EEEc---cCc--EEEeCEEEEecCcCchh
Q 015167 82 TLQQILAHAV--GNDIILNDSNVIDFMDHGDKVS-VMLE---NGQ--CYAGDVLVGADGIWSKM 137 (412)
Q Consensus 82 ~L~~~L~~~l--~~~~i~~~~~v~~i~~~~~~v~-v~~~---dG~--~~~adllVgADG~~S~v 137 (412)
.+...|.+.+ .++++++++.++++..+++.|. |... +|+ .+.|+-||-|-|..+.+
T Consensus 137 ~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 137 ALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred HHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccccc
Confidence 4566666665 4789999999999988766543 3332 343 57899999999998744
No 249
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.36 E-value=1.9e+02 Score=30.10 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=32.0
Q ss_pred CCEEEcCCeEEEEEEeCCe-EEEEEccCcEEEeCEEEEe
Q 015167 93 NDIILNDSNVIDFMDHGDK-VSVMLENGQCYAGDVLVGA 130 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~-v~v~~~dG~~~~adllVgA 130 (412)
+..|++++.|..+...+++ +.+++.++....+|.||-+
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt 266 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVT 266 (501)
T ss_pred CcceeeceeeEEEEEecCCceEEEEECCCeeEeeEEEEE
Confidence 6679999999999987766 5788888888999998876
No 250
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=23.35 E-value=1.8e+02 Score=29.08 Aligned_cols=43 Identities=21% Similarity=0.220 Sum_probs=33.2
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEcc-CcEEE--eCEEEEecCcCc
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLEN-GQCYA--GDVLVGADGIWS 135 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~d-G~~~~--adllVgADG~~S 135 (412)
+++++.+++|++++.++..+.+.-.+ +++++ +|.||-|=|++.
T Consensus 58 gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p 103 (427)
T TIGR03385 58 GIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP 103 (427)
T ss_pred CCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence 67788899999998777666665432 45677 999999999854
No 251
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=23.31 E-value=2.5e+02 Score=20.10 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=24.5
Q ss_pred ccceEEEEECCEEEEEEcCCccceeeeCcCCceeecCCCCcEEeCCCCEEEEC
Q 015167 325 KMHAHIRYKDGAFYLIDLRSEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFG 377 (412)
Q Consensus 325 r~Ha~i~~~~~~~~i~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G 377 (412)
+...+|...+|..||+--+. .+.+-|.+|+...|..|..|.+.
T Consensus 15 ~~~~~l~v~~G~vWlT~~g~----------~~D~~L~~G~~l~l~~g~~vvl~ 57 (63)
T PF11142_consen 15 AAGQRLRVESGRVWLTREGD----------PDDYWLQAGDSLRLRRGGRVVLS 57 (63)
T ss_pred CCCcEEEEccccEEEECCCC----------CCCEEECCCCEEEeCCCCEEEEE
Confidence 34556788888999875432 11224445555555555555443
No 252
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=23.21 E-value=1.2e+02 Score=29.67 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCchh
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~v 137 (412)
+++++.+ +|++++.++. +|.+++|+++.+|.||-|=|+....
T Consensus 68 gv~~~~~-~v~~id~~~~--~V~~~~g~~~~yD~LviAtG~~~~~ 109 (364)
T TIGR03169 68 GARFVIA-EATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPL 109 (364)
T ss_pred CCEEEEE-EEEEEecccC--EEEECCCCcccccEEEEccCCCCCC
Confidence 5777654 7888887665 5667889899999999999986543
No 253
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=22.25 E-value=3.1e+02 Score=29.62 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=34.2
Q ss_pred CCEEEcCCeEEEEEEeCCe--EEEEEcc-------C--------cEEEeCEEEEecCcCchh
Q 015167 93 NDIILNDSNVIDFMDHGDK--VSVMLEN-------G--------QCYAGDVLVGADGIWSKM 137 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~--v~v~~~d-------G--------~~~~adllVgADG~~S~v 137 (412)
++.++.+++|++++.+++. +.+++.+ + +++.+|.||-|=|..-.+
T Consensus 368 GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 368 PVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred CcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 6899999999999876543 6666542 1 269999999999987554
No 254
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=22.07 E-value=2.6e+02 Score=28.00 Aligned_cols=53 Identities=13% Similarity=0.359 Sum_probs=27.5
Q ss_pred CCCEEecCCCCCCCCceeEEeC---------------CCcccccceEEEEECC-----EEEEEEcCCccceeeeCc
Q 015167 298 NEPYLIGSESQEDFPRTSIVIP---------------SAQVSKMHAHIRYKDG-----AFYLIDLRSEHGTYITDN 353 (412)
Q Consensus 298 ~~~~~iGR~~~~~~~~~~~~i~---------------~~~vSr~Ha~i~~~~~-----~~~i~Dl~S~nGt~vn~~ 353 (412)
.+.+-|||+.+.. +|+++- .++|||.-|+|..+.+ +.|-.-.+|++-.||...
T Consensus 95 tDMFQIGRSte~~---IDFvV~dt~~G~~~~~~~~~~qStISRfACRI~~dR~pPy~ariyAAGFDss~nIfLgek 167 (416)
T PF04710_consen 95 TDMFQIGRSTESP---IDFVVMDTVPGGQDNEDTQPTQSTISRFACRILCDRSPPYTARIYAAGFDSSRNIFLGEK 167 (416)
T ss_dssp EEEEEEES--STT----SEE---------------EEE--S-TT-EEEEEESSTT--EEEEEC---TTSEEEE-TT
T ss_pred cchhhhccCCCCC---cCEEEeCCCCCCCcCCCCCccccchhheeEEEEeccCCCceEEEEeeccCcccceeehhc
Confidence 4578889987664 565542 3489999999988764 344444456666777654
No 255
>PRK01777 hypothetical protein; Validated
Probab=22.05 E-value=88 Score=24.55 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=20.5
Q ss_pred CccceeeeCcCCceeecCCCCcEEeCCCCEEEECCC
Q 015167 344 SEHGTYITDNEGRRYRVSPNFPARFRPSNSIQFGSD 379 (412)
Q Consensus 344 S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~G~~ 379 (412)
|++-..|||. ... -.+.|++||+|.|=..
T Consensus 48 ~~~~vgI~Gk-----~v~--~d~~L~dGDRVeIyrP 76 (95)
T PRK01777 48 AKNKVGIYSR-----PAK--LTDVLRDGDRVEIYRP 76 (95)
T ss_pred ccceEEEeCe-----ECC--CCCcCCCCCEEEEecC
Confidence 4566778886 443 3578999999987543
No 256
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=21.56 E-value=2.7e+02 Score=31.73 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=38.4
Q ss_pred HHHhhc--CCCEEEcCCeEEEEEEeCCeEEEEEc----cCcEEEeCEEEEecCcCchhHHH
Q 015167 86 ILAHAV--GNDIILNDSNVIDFMDHGDKVSVMLE----NGQCYAGDVLVGADGIWSKMNLL 140 (412)
Q Consensus 86 ~L~~~l--~~~~i~~~~~v~~i~~~~~~v~v~~~----dG~~~~adllVgADG~~S~vr~~ 140 (412)
.+.+.+ .++.++.++.++.+..++....|++. +++++.+|.|+-+=|....+.+.
T Consensus 356 ~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~ 416 (985)
T TIGR01372 356 EARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLF 416 (985)
T ss_pred HHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHH
Confidence 344444 36889999999998765432234443 45679999999999998777544
No 257
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=20.93 E-value=42 Score=26.48 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCccc--eeeeCcCCceeecCCCCcEEeCCCCEEEEC
Q 015167 343 RSEHG--TYITDNEGRRYRVSPNFPARFRPSNSIQFG 377 (412)
Q Consensus 343 ~S~nG--t~vn~~~~~~~~l~~~~~~~l~~gd~i~~G 377 (412)
.=+.| +.||+. .|.|..+..+.|++||.|.|=
T Consensus 57 ~vrPGILvLINd~---DwEl~g~~~y~l~~~D~I~Fi 90 (96)
T PF09138_consen 57 SVRPGILVLINDA---DWELLGEEDYVLKDGDNITFI 90 (96)
T ss_dssp SB-TTEEEEETTC---EHHHHTCCCSB--TTEEEEEE
T ss_pred eEcCcEEEEEcCc---cceeecCcceEcCCCCEEEEE
Confidence 34556 556776 677877778999999998873
No 258
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=20.59 E-value=1.7e+02 Score=32.24 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCEEEcCCeEEEEEEeCCeEEEEEccCcEEEeCEEEEecCcCch
Q 015167 93 NDIILNDSNVIDFMDHGDKVSVMLENGQCYAGDVLVGADGIWSK 136 (412)
Q Consensus 93 ~~~i~~~~~v~~i~~~~~~v~v~~~dG~~~~adllVgADG~~S~ 136 (412)
+++++.+++|+.++.+.. .|++.+|+++.+|.||-|=|+...
T Consensus 68 gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcC
Confidence 788999999999987543 466788999999999999998654
Done!