Query 015171
Match_columns 412
No_of_seqs 291 out of 2901
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015171.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015171hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.8 1.1E-19 2.3E-24 157.5 0.5 264 12-311 98-376 (419)
2 KOG4341 F-box protein containi 99.7 1.7E-19 3.6E-24 163.1 -5.9 319 14-348 74-436 (483)
3 PLN03210 Resistant to P. syrin 99.5 6.1E-14 1.3E-18 151.4 9.5 211 135-347 630-878 (1153)
4 PLN00113 leucine-rich repeat r 99.4 5E-13 1.1E-17 143.4 8.4 233 113-348 92-342 (968)
5 PLN00113 leucine-rich repeat r 99.3 3.7E-12 7.9E-17 136.8 7.9 155 131-287 156-318 (968)
6 PLN03210 Resistant to P. syrin 99.2 1.7E-11 3.7E-16 132.6 9.5 205 137-348 609-856 (1153)
7 KOG4341 F-box protein containi 99.0 1.8E-11 3.9E-16 111.5 -2.5 268 101-372 126-432 (483)
8 KOG4194 Membrane glycoprotein 99.0 1.1E-10 2.4E-15 110.6 0.8 230 114-348 149-426 (873)
9 PF12937 F-box-like: F-box-lik 98.9 1.4E-09 3.1E-14 70.1 3.4 35 12-46 1-35 (47)
10 cd00116 LRR_RI Leucine-rich re 98.9 5.7E-10 1.2E-14 104.3 1.5 194 115-309 24-261 (319)
11 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.4E-15 106.0 -2.4 193 136-328 118-335 (505)
12 KOG4194 Membrane glycoprotein 98.8 4E-10 8.6E-15 106.9 -0.6 229 115-348 126-402 (873)
13 KOG2120 SCF ubiquitin ligase, 98.7 1E-09 2.3E-14 96.0 -1.3 166 163-328 187-372 (419)
14 cd00116 LRR_RI Leucine-rich re 98.7 1.9E-09 4.1E-14 100.8 0.2 196 115-310 52-290 (319)
15 KOG3207 Beta-tubulin folding c 98.6 7.8E-09 1.7E-13 95.1 -1.0 172 114-285 146-334 (505)
16 PRK15387 E3 ubiquitin-protein 98.5 1.7E-07 3.6E-12 95.7 6.9 69 278-348 383-455 (788)
17 PRK15387 E3 ubiquitin-protein 98.5 5.7E-07 1.2E-11 91.8 10.6 194 115-329 202-412 (788)
18 PF00646 F-box: F-box domain; 98.5 4.7E-08 1E-12 63.4 0.9 37 12-48 3-39 (48)
19 KOG1909 Ran GTPase-activating 98.5 1.9E-08 4.1E-13 90.1 -1.2 208 83-310 30-282 (382)
20 KOG1909 Ran GTPase-activating 98.4 5.7E-08 1.2E-12 87.1 0.8 213 137-349 28-309 (382)
21 smart00256 FBOX A Receptor for 98.4 3.3E-07 7.2E-12 57.1 3.3 34 15-48 1-34 (41)
22 KOG0444 Cytoskeletal regulator 98.3 3.8E-09 8.3E-14 101.2 -9.3 80 114-196 126-207 (1255)
23 KOG0444 Cytoskeletal regulator 98.3 7.8E-09 1.7E-13 99.1 -7.9 168 115-286 33-206 (1255)
24 PRK15370 E3 ubiquitin-protein 98.3 5.6E-07 1.2E-11 92.2 4.6 215 115-348 179-425 (754)
25 PF14580 LRR_9: Leucine-rich r 98.2 4.1E-07 8.9E-12 76.1 0.7 60 228-287 87-150 (175)
26 KOG3665 ZYG-1-like serine/thre 98.1 7.5E-07 1.6E-11 90.4 0.7 148 139-287 122-285 (699)
27 KOG1947 Leucine rich repeat pr 98.1 3.1E-07 6.7E-12 90.9 -2.4 192 113-311 187-414 (482)
28 PRK15370 E3 ubiquitin-protein 98.0 1.1E-05 2.4E-10 82.9 7.7 156 139-308 178-335 (754)
29 KOG2982 Uncharacterized conser 98.0 1E-06 2.2E-11 77.6 -0.3 180 114-293 71-265 (418)
30 KOG0618 Serine/threonine phosp 98.0 5.5E-07 1.2E-11 90.4 -2.6 68 102-173 254-322 (1081)
31 KOG0617 Ras suppressor protein 98.0 9.8E-08 2.1E-12 77.3 -6.7 147 136-286 30-182 (264)
32 KOG1947 Leucine rich repeat pr 97.9 1.1E-06 2.4E-11 86.9 -1.7 124 137-260 186-329 (482)
33 KOG0618 Serine/threonine phosp 97.9 3.4E-07 7.4E-12 91.8 -6.4 210 114-330 241-487 (1081)
34 PF14580 LRR_9: Leucine-rich r 97.8 6.7E-06 1.5E-10 68.8 0.3 60 228-287 63-123 (175)
35 KOG3665 ZYG-1-like serine/thre 97.7 9.9E-06 2.1E-10 82.4 -0.2 123 185-309 121-261 (699)
36 KOG4658 Apoptotic ATPase [Sign 97.5 0.0003 6.4E-09 73.8 8.7 275 64-348 457-780 (889)
37 KOG1859 Leucine-rich repeat pr 97.4 2.3E-05 4.9E-10 77.3 -1.1 201 79-286 51-288 (1096)
38 KOG4658 Apoptotic ATPase [Sign 97.4 3.5E-05 7.5E-10 80.6 -0.4 198 113-313 570-785 (889)
39 KOG4237 Extracellular matrix p 97.4 2.3E-05 5E-10 71.9 -1.6 91 273-364 270-373 (498)
40 KOG1259 Nischarin, modulator o 97.2 5.4E-05 1.2E-09 67.1 -1.4 20 130-149 205-224 (490)
41 KOG2982 Uncharacterized conser 97.1 2.9E-05 6.3E-10 68.7 -3.4 150 139-288 45-210 (418)
42 KOG0617 Ras suppressor protein 97.1 3.6E-06 7.8E-11 68.3 -8.3 147 115-266 34-187 (264)
43 KOG1259 Nischarin, modulator o 97.1 0.00058 1.3E-08 60.7 4.3 17 332-348 393-409 (490)
44 PRK15386 type III secretion pr 97.0 0.0014 3E-08 62.0 6.1 136 159-308 50-187 (426)
45 KOG0472 Leucine-rich repeat pr 96.9 8.4E-06 1.8E-10 74.9 -9.5 197 128-330 103-308 (565)
46 PF13855 LRR_8: Leucine rich r 96.8 0.00034 7.4E-09 47.6 0.2 56 140-196 2-59 (61)
47 PF13855 LRR_8: Leucine rich r 96.8 0.00048 1E-08 46.9 0.8 58 229-287 1-59 (61)
48 PRK15386 type III secretion pr 96.7 0.0031 6.7E-08 59.7 6.0 31 114-149 52-82 (426)
49 COG4886 Leucine-rich repeat (L 96.7 0.0015 3.2E-08 63.1 3.5 144 138-286 115-264 (394)
50 KOG0472 Leucine-rich repeat pr 96.5 1.4E-05 3.1E-10 73.4 -10.8 59 206-266 250-311 (565)
51 KOG2739 Leucine-rich acidic nu 96.5 0.00028 6E-09 61.6 -2.6 104 116-219 20-127 (260)
52 COG4886 Leucine-rich repeat (L 96.5 0.0017 3.6E-08 62.7 2.5 166 115-287 117-287 (394)
53 KOG2123 Uncharacterized conser 96.3 0.00022 4.8E-09 62.6 -4.0 95 208-304 19-123 (388)
54 PF07723 LRR_2: Leucine Rich R 96.1 0.0095 2.1E-07 32.5 3.2 25 162-186 1-26 (26)
55 COG5238 RNA1 Ran GTPase-activa 96.0 0.0029 6.4E-08 55.6 1.5 42 156-197 87-131 (388)
56 COG5238 RNA1 Ran GTPase-activa 95.9 0.0035 7.6E-08 55.1 1.5 147 180-327 86-280 (388)
57 KOG0281 Beta-TrCP (transducin 95.9 0.0038 8.2E-08 56.3 1.6 38 8-45 71-112 (499)
58 PF12799 LRR_4: Leucine Rich r 95.9 0.013 2.9E-07 36.7 3.5 34 252-287 1-34 (44)
59 KOG2739 Leucine-rich acidic nu 95.7 0.0017 3.6E-08 56.8 -1.4 13 228-240 90-102 (260)
60 PLN03150 hypothetical protein; 95.6 0.012 2.7E-07 60.0 4.1 102 209-311 419-528 (623)
61 PF12799 LRR_4: Leucine Rich r 95.4 0.01 2.2E-07 37.2 1.7 38 229-266 1-38 (44)
62 KOG1644 U2-associated snRNP A' 95.3 0.015 3.3E-07 49.0 2.9 59 228-286 87-149 (233)
63 KOG4237 Extracellular matrix p 95.2 0.0017 3.8E-08 59.9 -2.9 57 115-173 68-128 (498)
64 KOG3864 Uncharacterized conser 95.2 0.0042 9.1E-08 52.3 -0.6 78 140-217 102-185 (221)
65 KOG1644 U2-associated snRNP A' 95.1 0.053 1.2E-06 45.8 5.6 55 140-197 43-99 (233)
66 KOG2123 Uncharacterized conser 95.0 0.0016 3.5E-08 57.4 -3.7 96 115-214 20-123 (388)
67 PLN03150 hypothetical protein; 94.8 0.028 6.1E-07 57.5 3.9 83 231-314 420-506 (623)
68 KOG2997 F-box protein FBX9 [Ge 94.4 0.026 5.7E-07 50.7 2.3 37 9-45 104-145 (366)
69 KOG3864 Uncharacterized conser 93.6 0.016 3.4E-07 48.9 -0.7 60 162-222 102-165 (221)
70 PLN03215 ascorbic acid mannose 93.3 0.068 1.5E-06 50.2 2.9 37 12-48 4-41 (373)
71 KOG0532 Leucine-rich repeat (L 90.5 0.0049 1.1E-07 59.7 -7.9 36 231-266 213-248 (722)
72 KOG1859 Leucine-rich repeat pr 90.2 0.0058 1.3E-07 60.9 -7.9 119 141-264 166-291 (1096)
73 KOG0531 Protein phosphatase 1, 90.0 0.034 7.4E-07 54.0 -2.9 102 135-240 91-197 (414)
74 KOG0274 Cdc4 and related F-box 88.8 0.2 4.4E-06 50.0 1.4 40 6-45 102-141 (537)
75 PF13013 F-box-like_2: F-box-l 87.9 0.47 1E-05 36.2 2.6 30 11-40 21-50 (109)
76 smart00367 LRR_CC Leucine-rich 87.1 0.41 8.8E-06 25.9 1.4 21 161-181 2-23 (26)
77 KOG0532 Leucine-rich repeat (L 87.0 0.036 7.7E-07 54.0 -4.8 152 129-287 88-244 (722)
78 KOG0531 Protein phosphatase 1, 85.4 0.34 7.4E-06 47.0 0.8 98 115-218 96-196 (414)
79 PF13516 LRR_6: Leucine Rich r 84.1 0.87 1.9E-05 24.0 1.7 21 251-271 1-21 (24)
80 PF13504 LRR_7: Leucine rich r 83.1 0.92 2E-05 21.8 1.4 8 279-286 3-10 (17)
81 PF00560 LRR_1: Leucine Rich R 79.0 1.8 3.9E-05 22.3 1.8 9 300-308 2-10 (22)
82 PF08387 FBD: FBD; InterPro: 77.4 1.3 2.9E-05 28.6 1.2 27 320-346 15-50 (51)
83 PF13306 LRR_5: Leucine rich r 77.3 2.6 5.7E-05 32.9 3.2 11 184-194 10-20 (129)
84 KOG3926 F-box proteins [Amino 75.5 1.4 3E-05 38.9 1.1 52 4-55 194-252 (332)
85 PF13306 LRR_5: Leucine rich r 70.1 0.95 2.1E-05 35.5 -1.1 56 137-194 10-66 (129)
86 smart00579 FBD domain in FBox 70.0 6.9 0.00015 27.2 3.5 30 320-349 6-44 (72)
87 smart00368 LRR_RI Leucine rich 68.6 3 6.4E-05 23.0 1.1 22 161-182 2-23 (28)
88 KOG4579 Leucine-rich repeat (L 63.9 1.2 2.5E-05 35.6 -1.6 60 138-199 52-113 (177)
89 PF09372 PRANC: PRANC domain; 61.1 6.9 0.00015 29.1 2.2 25 10-34 70-94 (97)
90 KOG3763 mRNA export factor TAP 60.1 4.2 9E-05 40.0 1.0 61 138-200 217-284 (585)
91 PF13018 ESPR: Extended Signal 58.0 7.3 0.00016 20.7 1.3 12 400-412 2-13 (24)
92 KOG1665 AFH1-interacting prote 55.3 21 0.00045 30.9 4.2 60 157-218 167-226 (302)
93 KOG4579 Leucine-rich repeat (L 45.1 1.5 3.3E-05 35.0 -3.6 41 226-266 74-114 (177)
94 KOG3763 mRNA export factor TAP 40.8 5.6 0.00012 39.2 -1.4 63 156-218 213-280 (585)
95 KOG4308 LRR-containing protein 36.0 0.71 1.5E-05 45.5 -8.5 65 135-199 111-185 (478)
96 smart00369 LRR_TYP Leucine-ric 33.9 29 0.00064 18.3 1.4 14 252-265 2-15 (26)
97 smart00370 LRR Leucine-rich re 33.9 29 0.00064 18.3 1.4 14 252-265 2-15 (26)
98 smart00365 LRR_SD22 Leucine-ri 26.8 49 0.0011 17.9 1.4 13 252-264 2-14 (26)
99 KOG4408 Putative Mg2+ and Co2+ 26.1 16 0.00034 33.7 -0.9 40 12-51 8-47 (386)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.1e-19 Score=157.52 Aligned_cols=264 Identities=20% Similarity=0.228 Sum_probs=148.3
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCee-eeecccCCCchhhHHHHHHHHHHhccccCCCCceeEEE
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDV-EVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKKFSL 90 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~l-~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~l~l 90 (412)
+..||||++..||+.|+.+|+.+.+.|||||+++-+.-... ..| ....... .....+.+ .+++..+++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lD--l~~r~i~---p~~l~~l~------~rgV~v~Rl 166 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLD--LTGRNIH---PDVLGRLL------SRGVIVFRL 166 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeec--cCCCccC---hhHHHHHH------hCCeEEEEc
Confidence 67899999999999999999999999999999764332221 112 1111011 12222222 123444433
Q ss_pred EEecCCCCCChhhHHHHHH--HHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCccccee
Q 015171 91 ELDLINSPENASLAGRCLG--LAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKL 166 (412)
Q Consensus 91 ~~~~~~~~~~~~~~~~~l~--~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L 166 (412)
--.-. .++ +... ..+..+++.++++......-.+--.+..|..|+.|.|.+..++++ ...+.-.+|+.|
T Consensus 167 ar~~~---~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~l 239 (419)
T KOG2120|consen 167 ARSFM---DQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRL 239 (419)
T ss_pred chhhh---cCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceee
Confidence 21100 111 1111 122235777777764443334444455666777777776666555 333444566666
Q ss_pred EeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCccee---eccC-CCCccEEEEeeC-CCCceEEEecCcccEEEeeeee
Q 015171 167 ALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVN-LSNLKEIILVNT-SDIKRVEIKTSNVNALAIHQTY 240 (412)
Q Consensus 167 ~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~-l~~L~~L~i~~c-~~l~~~~~~~p~L~~L~l~~~~ 240 (412)
+|+.+.- +..+++.++++|..|.+|.|+.|...... .+.+ -++|+.|++++| .++.
T Consensus 240 nlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~------------------ 301 (419)
T KOG2120|consen 240 NLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ------------------ 301 (419)
T ss_pred ccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh------------------
Confidence 7766655 66666666666777777766666543221 1111 145555555544 1110
Q ss_pred ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccc--cc--ccccccceEEEecCccc
Q 015171 241 LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDKL 311 (412)
Q Consensus 241 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~--~~~~~L~~L~l~~c~~l 311 (412)
...+......||+|.+|+|+.+..........+..|+.|++|.++.|..+.. +. ...|.|.+|++.+|-..
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence 0011122356888888888766543334445567789999999999866532 11 25578888888887654
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.70 E-value=1.7e-19 Score=163.06 Aligned_cols=319 Identities=18% Similarity=0.210 Sum_probs=166.0
Q ss_pred CCCHHHHHHHHccCChHHHHHHhhhhhchhhh------cccCCeeeeecccCCCchhhHHHHHHHHHHhccccCCCCcee
Q 015171 14 TLPEPILHHILSFLPFKEVAQTCLLSKRWKQV------WQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (412)
Q Consensus 14 ~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~ 87 (412)
.||.|++.+|||+|+.+.+.|++++|+-|..+ |..+....|..+..+ .+|...+ ++.+..++.
T Consensus 74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------~VV~~~~---~Rcgg~lk~ 142 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------GVVENMI---SRCGGFLKE 142 (483)
T ss_pred cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------cceehHh---hhhcccccc
Confidence 59999999999999999999999999999875 555544444432221 2233323 122356666
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC----CCCccCcc
Q 015171 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFS 162 (412)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~ 162 (412)
++++.... .....+.. .....++++.|.+.++.. ++..+-.....|+.|++|++..|...+. .....|++
T Consensus 143 LSlrG~r~---v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 143 LSLRGCRA---VGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccc---CCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 66664432 11111111 112234666666665431 1111222223466677777666543322 23446677
Q ss_pred cceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceee---cc-CCCCccEEEEeeCCCCceEE-----EecCccc
Q 015171 163 LRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLD---LV-NLSNLKEIILVNTSDIKRVE-----IKTSNVN 232 (412)
Q Consensus 163 L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~-~l~~L~~L~i~~c~~l~~~~-----~~~p~L~ 232 (412)
|++|++++|.- ...+++.+..+|..++++.+++|...+.-. +. .++-+.++++..|..++... -.+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 77777776665 555666666666666666666665432110 00 12334444444442222221 1244555
Q ss_pred EEEeeeeeccc---eEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEeccccccc-----ccccccccccceE
Q 015171 233 ALAIHQTYLFP---IEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKL-----TSVRISSPCLKTL 303 (412)
Q Consensus 233 ~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l-----~~l~~~~~~L~~L 303 (412)
.+.++++.+.+ ......++++|+.|.+..+. +++..+..+..+++.|+.+++.+|... ..+...++.|+.|
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 66555554211 11112455666666665443 444445555556666666666655322 2233355666666
Q ss_pred EEecCccccee--------eccCCCeeeEEEeccee------eecccccccceEEEEEe
Q 015171 304 ILECCDKLIQV--------EIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 304 ~l~~c~~l~~~--------~~~~~~L~~l~~~~~~~------~~l~~~~~L~~l~i~~~ 348 (412)
.+++|..+.+. ..+...|+.+++.+++. ..+..+++||.+.+...
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 66666554211 11223455555555544 34445667777666544
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=6.1e-14 Score=151.37 Aligned_cols=211 Identities=23% Similarity=0.233 Sum_probs=111.2
Q ss_pred ccCCCCeeEEEEecee-ecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeecc-CCCCccE
Q 015171 135 IFYVESLHVLELSYCK-LQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKE 212 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~l~~L~~ 212 (412)
+..+++|+.|+|+++. +...+....+++|++|+|.+|..- ..+..-+..+++|+.|++++|..+..+... .+++|+.
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~ 708 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence 3344444444444432 111133344455555555544321 111122344555555555555544333211 2455666
Q ss_pred EEEeeCCCCceEEEecCcccEEEeeeeeccceEEe------------------------------ccCCCCCcEEEeecc
Q 015171 213 IILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVN------------------------------VSSCGNLKCLKFDFL 262 (412)
Q Consensus 213 L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~------------------------------~~~~~~L~~L~l~~~ 262 (412)
|++++|..+..++...++|+.|++.++....++.. ...+++|+.|+++++
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 66666644444433334555555554431111110 011245666666655
Q ss_pred ccchHHHHHhhcCCCCccEEecccccccccccc--cccccceEEEecCcccceeeccCCCeeeEEEeccee----eeccc
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSN 336 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~----~~l~~ 336 (412)
..... ++..+.++++|+.|++.+|..++.++. .+++|+.|++++|..+..++...++|+.|.+.+... ..+.+
T Consensus 789 ~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~ 867 (1153)
T PLN03210 789 PSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK 867 (1153)
T ss_pred CCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc
Confidence 43322 333456788888888888887777765 457888888888888766655556777777766543 34556
Q ss_pred ccccceEEEEE
Q 015171 337 ALSLSETSLCF 347 (412)
Q Consensus 337 ~~~L~~l~i~~ 347 (412)
+++|+.|.+..
T Consensus 868 l~~L~~L~L~~ 878 (1153)
T PLN03210 868 FSNLSFLDMNG 878 (1153)
T ss_pred CCCCCEEECCC
Confidence 77777777744
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.40 E-value=5e-13 Score=143.44 Aligned_cols=233 Identities=15% Similarity=0.145 Sum_probs=142.7
Q ss_pred hCCceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
.++++.|+++.+.. ...+|..++ .+++|++|+++++.+........+++|++|+|+++.++... ...+.++++|++|
T Consensus 92 l~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~-p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEI-PNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccC-ChHHhcCCCCCEE
Confidence 35888888886432 235777666 78899999999887765444466888999999888774322 2235678888888
Q ss_pred EeeccCCccee--eccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccc
Q 015171 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 192 ~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
++++|.....+ .+..+++|+.|++++|.-...++ ...++|+.|+++++. ....+..++.+++|++|+++++.+.
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence 88887643222 34456788888887773221121 245677777777665 2233445667777777777777665
Q ss_pred hHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee---ccCCCeeeEEEeccee-----eec
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFS 334 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~~l 334 (412)
.. ++..+..+++|+.|+++++.....++. ..++|++|++++|.....++ ...++|+.+.+.++.. ..+
T Consensus 250 ~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 250 GP-IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred cc-cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 43 233355667777777776543333322 34566777776665432222 2345566666554432 234
Q ss_pred ccccccceEEEEEe
Q 015171 335 SNALSLSETSLCFS 348 (412)
Q Consensus 335 ~~~~~L~~l~i~~~ 348 (412)
.++++|+.|.+..+
T Consensus 329 ~~l~~L~~L~L~~n 342 (968)
T PLN00113 329 TSLPRLQVLQLWSN 342 (968)
T ss_pred hcCCCCCEEECcCC
Confidence 45566666666443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.30 E-value=3.7e-12 Score=136.78 Aligned_cols=155 Identities=21% Similarity=0.157 Sum_probs=59.8
Q ss_pred CCccccCCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccC
Q 015171 131 LPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVN 206 (412)
Q Consensus 131 lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~ 206 (412)
+|..+.++++|++|++++|.+.. +.....+++|++|+++++.+.... ..-+..+++|+.|++++|.....+ .+..
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 33344444455555554443321 122334444444444444332111 111234444444444444322111 1223
Q ss_pred CCCccEEEEeeCCC---CceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 207 LSNLKEIILVNTSD---IKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 207 l~~L~~L~i~~c~~---l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+++|+.|++++|.- +......+++|++|.++++. ....+..+..+++|++|+++++.+... ++..+..+++|+.|
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 313 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNLEIL 313 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCCcEE
Confidence 44555555544411 10001123444555544443 112222333444555555544443322 22223344445555
Q ss_pred ecccc
Q 015171 283 SMTKC 287 (412)
Q Consensus 283 ~l~~c 287 (412)
++.++
T Consensus 314 ~l~~n 318 (968)
T PLN00113 314 HLFSN 318 (968)
T ss_pred ECCCC
Confidence 55443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=1.7e-11 Score=132.59 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=133.7
Q ss_pred CCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 137 YVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
...+|++|++.++.+..- .....+++|+.|+|+++..- ..+.. ++.+++|+.|++++|..+..+ .+..+++|+.|
T Consensus 609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 456788888877765432 34567888888888876431 11112 456889999999988776543 34557889999
Q ss_pred EEeeCCCCceEEE--ecCcccEEEeeeeeccceEEec-cCCCCCcEEEeeccccchHHHHH-------------------
Q 015171 214 ILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCN------------------- 271 (412)
Q Consensus 214 ~i~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~------------------- 271 (412)
++++|..+..++. ..++|+.|.+++|.... .+ ...++|+.|+++++.+.. ++.
T Consensus 687 ~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~---~~p~~~~nL~~L~L~~n~i~~--lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 687 DMSRCENLEILPTGINLKSLYRLNLSGCSRLK---SFPDISTNISWLDLDETAIEE--FPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred eCCCCCCcCccCCcCCCCCCCEEeCCCCCCcc---ccccccCCcCeeecCCCcccc--ccccccccccccccccccchhh
Confidence 9999877666653 57789999998876211 11 123577788887665432 111
Q ss_pred -----------hhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeec--cCCCeeeEEEeccee--ee
Q 015171 272 -----------GISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHGDLI--SF 333 (412)
Q Consensus 272 -----------~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~~~L~~l~~~~~~~--~~ 333 (412)
....+++|+.|++++|+.+..++. .+++|+.|+|++|..+..++. ..++|+.|.+.++.. .+
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccc
Confidence 011235778888887766666554 567889999999988766553 456788888877654 22
Q ss_pred cccccccceEEEEEe
Q 015171 334 SSNALSLSETSLCFS 348 (412)
Q Consensus 334 l~~~~~L~~l~i~~~ 348 (412)
-....+|+.|.+..+
T Consensus 842 p~~~~nL~~L~Ls~n 856 (1153)
T PLN03210 842 PDISTNISDLNLSRT 856 (1153)
T ss_pred cccccccCEeECCCC
Confidence 223457888887544
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.02 E-value=1.8e-11 Score=111.54 Aligned_cols=268 Identities=18% Similarity=0.220 Sum_probs=178.6
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEe-C
Q 015171 101 ASLAGRCLGLAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-D 174 (412)
Q Consensus 101 ~~~~~~~l~~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~ 174 (412)
...+...+..+- ..+++|.+.++.. ....+-....+|+++++|++.+|...+. .....|++|+.|++..|.. +
T Consensus 126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT 204 (483)
T KOG4341|consen 126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSIT 204 (483)
T ss_pred CcceehHhhhhc-cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhH
Confidence 334444343322 5799999998654 3334444566799999999999975433 4456799999999999766 8
Q ss_pred HHHHHHHHcCCCCccEEEeeccCCcceee----ccCCCCccEEEEeeCCCCc-----eEEEecCcccEEEeeeee---cc
Q 015171 175 DQAIASLISGCPLIEYLEIRSCEGLESLD----LVNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTY---LF 242 (412)
Q Consensus 175 ~~~l~~l~~~~p~Le~L~l~~c~~~~~~~----i~~l~~L~~L~i~~c~~l~-----~~~~~~p~L~~L~l~~~~---~~ 242 (412)
+..+..+..+||+|++|.++.|+.+..-. ..++..++.+...+|.... .+.-.++-+.++++..|. +.
T Consensus 205 ~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 205 DVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 88899899999999999999998775422 2345667778777883322 222234445555544554 11
Q ss_pred ceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccccccccc-----cccccccceEEEecCccc-----
Q 015171 243 PIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLTSV-----RISSPCLKTLILECCDKL----- 311 (412)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-----~~~~~~L~~L~l~~c~~l----- 311 (412)
.....-..+..|+.|+.+++. +.+..+..+..++++|+.|.+.+|...++. ..+++.|+.+++..|...
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 111122357788999997654 556677778889999999999999866543 447899999999998764
Q ss_pred ceeeccCCCeeeEEEeccee----------eecccccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 312 IQVEIETPNLSIFKYHGDLI----------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 312 ~~~~~~~~~L~~l~~~~~~~----------~~l~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
......+|.|+.+.+.-+.. .+-.....|+.+.++.... -.+...+.+.+-..+++..
T Consensus 365 ~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~---i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 365 ASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL---ITDATLEHLSICRNLERIE 432 (483)
T ss_pred hhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC---chHHHHHHHhhCcccceee
Confidence 34556788888887763322 1223355677777755522 2344555666666666644
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=110.61 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=123.5
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+-++.|+++..... ++|.. +..-.++++|+|+++.+... ..+..+.+|.+|.|+.++++.-. ...+.+.|.|+.
T Consensus 149 ~alrslDLSrN~is--~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 149 PALRSLDLSRNLIS--EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP-QRSFKRLPKLES 225 (873)
T ss_pred hhhhhhhhhhchhh--cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC-HHHhhhcchhhh
Confidence 35667777653322 33322 22346777888877766443 44556667777777777663211 223455677777
Q ss_pred EEeeccCC--cceeeccCCCCccEEEEeeC-------------CCCceEE--------------EecCcccEEEeeeeec
Q 015171 191 LEIRSCEG--LESLDLVNLSNLKEIILVNT-------------SDIKRVE--------------IKTSNVNALAIHQTYL 241 (412)
Q Consensus 191 L~l~~c~~--~~~~~i~~l~~L~~L~i~~c-------------~~l~~~~--------------~~~p~L~~L~l~~~~~ 241 (412)
|+|..+.. .+.+.+.++++|+.|.+... .+++.+. .....|+.|+++.+..
T Consensus 226 LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI 305 (873)
T KOG4194|consen 226 LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAI 305 (873)
T ss_pred hhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhh
Confidence 77766532 12334444555555554433 1111111 1234566666666552
Q ss_pred cceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccc----
Q 015171 242 FPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---- 312 (412)
Q Consensus 242 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~---- 312 (412)
..+. ...+.+++|++|+|+++.+..-. .+-+..+..|+.|.++.. .+..+.. +..+|+.|++.+.....
T Consensus 306 ~rih~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 306 QRIHIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred heeecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 2222 23456788888888887765421 112334556777777652 2222222 44566777666543321
Q ss_pred --eeeccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 313 --QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 313 --~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
....++|.|++|.+.|.+. ..+..+.+|++|++..+
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC
Confidence 1113456777777777665 45556667777777554
No 9
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.89 E-value=1.4e-09 Score=70.14 Aligned_cols=35 Identities=34% Similarity=0.746 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
|+.||+|++.+||+||+.+|+++++.|||+|+++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999864
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=5.7e-10 Score=104.30 Aligned_cols=194 Identities=19% Similarity=0.185 Sum_probs=111.5
Q ss_pred CceEEEEEeCCCc---cccCCccccCCCCeeEEEEeceeecC--C------CCCccCcccceeEeeeEEeCH---HHHHH
Q 015171 115 EVKELVLVHWRSE---RRNLPEIIFYVESLHVLELSYCKLQQ--P------SENVKLFSLRKLALREVCADD---QAIAS 180 (412)
Q Consensus 115 ~l~~L~l~~~~~~---~~~lp~~~~~~~~L~~L~L~~~~~~~--~------~~~~~l~~L~~L~L~~~~~~~---~~l~~ 180 (412)
+++++++..+... ...++..+...++|++|+++++.+.. . .....+++|+.|+++++.+.. ..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 5888888875432 22345556667788999888876542 1 223457788899988887742 23444
Q ss_pred HHcCCCCccEEEeeccCCcc----ee--eccCC-CCccEEEEeeCCCC----ceEE---EecCcccEEEeeeeecc--c-
Q 015171 181 LISGCPLIEYLEIRSCEGLE----SL--DLVNL-SNLKEIILVNTSDI----KRVE---IKTSNVNALAIHQTYLF--P- 243 (412)
Q Consensus 181 l~~~~p~Le~L~l~~c~~~~----~~--~i~~l-~~L~~L~i~~c~~l----~~~~---~~~p~L~~L~l~~~~~~--~- 243 (412)
+..+ ++|++|++++|.... .+ .+..+ ++|+.|++.+|.-- ..+. ..+++|++|+++++... .
T Consensus 104 l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred Hhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 4445 678899888886431 00 12334 77888888877211 1111 12356777777666511 0
Q ss_pred --eEEeccCCCCCcEEEeeccccchHH---HHHhhcCCCCccEEecccccccc----cccc----cccccceEEEecCc
Q 015171 244 --IEVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 244 --~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~----~l~~----~~~~L~~L~l~~c~ 309 (412)
+...+..+++|++|+++++.+.+.. +...+..+++|+.|++++|.... .+.. ..+.|++|++++|.
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 1112334457777777777665432 23344556777777777753211 1111 12567777776664
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-10 Score=106.01 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=135.7
Q ss_pred cCCCCeeEEEEeceeecCCC---CCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcc---eeeccCCC
Q 015171 136 FYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLE---SLDLVNLS 208 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~---~~~i~~l~ 208 (412)
.+.++|+...|.++....++ ....||+++.|+|+++-+ ....+..++..+|+||.|.++.+...- ......++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 34678888999988776553 577899999999999988 777888999999999999999886442 11222468
Q ss_pred CccEEEEeeC----CCCceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEe
Q 015171 209 NLKEIILVNT----SDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (412)
Q Consensus 209 ~L~~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (412)
+|+.|.+++| ..+..+...+|+|+.|.+.++. ..........+..|++|+|+++.+.+.........+|.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 9999999999 2333455679999999998885 1111223345788999999988877643334467899999999
Q ss_pred cccc--cccccc-------cccccccceEEEecCccc--ceee--ccCCCeeeEEEec
Q 015171 284 MTKC--HKLTSV-------RISSPCLKTLILECCDKL--IQVE--IETPNLSIFKYHG 328 (412)
Q Consensus 284 l~~c--~~l~~l-------~~~~~~L~~L~l~~c~~l--~~~~--~~~~~L~~l~~~~ 328 (412)
++.| +.+... ...+|+|++|++...+.. .++. -..++|+.+.+.+
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 9875 222111 126789999998876652 1221 2334555555433
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.84 E-value=4e-10 Score=106.95 Aligned_cols=229 Identities=14% Similarity=0.089 Sum_probs=130.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
+++.|++......... ...+...+.|+.|+|+.+.+... +.+..-.++++|+|.++.+++-.... +.++.+|-.|.
T Consensus 126 hl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlk 203 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLK 203 (873)
T ss_pred ceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeee
Confidence 6999998874322111 11234468899999999876543 44445578999999999995544443 34566899999
Q ss_pred eeccCCcc--eeeccCCCCccEEEEeeCCCCce---EEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccc
Q 015171 193 IRSCEGLE--SLDLVNLSNLKEIILVNTSDIKR---VEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 193 l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~---~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 265 (412)
|+.+.... ...+..+|+|+.|++... .++. +.. ..|+|+.|.+..+..... .-.|-.+.++++|+|..+.+.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 99886532 122334789999998765 2221 122 467788887766551110 012344667777777666554
Q ss_pred hHHHHHhhcCCCCccEEecccccccccc----cccccccceEEEecCcc--------------------------c-cee
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILECCDK--------------------------L-IQV 314 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~L~~L~l~~c~~--------------------------l-~~~ 314 (412)
.-. .+.+.++..|+.|+++.. .+..+ |..+++|+.|++++... + +..
T Consensus 283 ~vn-~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 283 AVN-EGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhh-cccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 421 223344555566655542 11111 22344555555544322 1 111
Q ss_pred eccCCCeeeEEEeccee--------eecccccccceEEEEEe
Q 015171 315 EIETPNLSIFKYHGDLI--------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 315 ~~~~~~L~~l~~~~~~~--------~~l~~~~~L~~l~i~~~ 348 (412)
.....+|+.|.+..... -.+..+++|++|.+.++
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc
Confidence 23345666666655433 34445788888888766
No 13
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-09 Score=96.04 Aligned_cols=166 Identities=19% Similarity=0.291 Sum_probs=91.0
Q ss_pred cceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEE-----ecCcccEEE
Q 015171 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALA 235 (412)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~ 235 (412)
|+.|+|+...++...+..+++.|..|+.|.|++..--+.+ .|..=.+|+.|+++.|+++.+... +|..|..|.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 4555555544444555555555555555555544332222 111114455555555544443321 445555556
Q ss_pred eeeeeccc--eEEeccC-CCCCcEEEeeccc--cchHHHHHhhcCCCCccEEecccccccccc----cccccccceEEEe
Q 015171 236 IHQTYLFP--IEVNVSS-CGNLKCLKFDFLP--IEDEWLCNGISKLPLLEYLSMTKCHKLTSV----RISSPCLKTLILE 306 (412)
Q Consensus 236 l~~~~~~~--~~~~~~~-~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l----~~~~~~L~~L~l~ 306 (412)
+++|.... +.+.+.+ -++|+.|+++|+. +....+..+...||+|.+|++++|..++.- ...++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 65555111 1111111 2567777776543 223345667788999999999998766552 2267899999999
Q ss_pred cCcccce---e-eccCCCeeeEEEec
Q 015171 307 CCDKLIQ---V-EIETPNLSIFKYHG 328 (412)
Q Consensus 307 ~c~~l~~---~-~~~~~~L~~l~~~~ 328 (412)
.|..+.. + ..+.|.|..|++.|
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecc
Confidence 9998731 1 12445555555544
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1.9e-09 Score=100.81 Aligned_cols=196 Identities=21% Similarity=0.132 Sum_probs=111.4
Q ss_pred CceEEEEEeCCCc-----cccCCccccCCCCeeEEEEeceeecCC--CCCccC---cccceeEeeeEEeCHHHHHH---H
Q 015171 115 EVKELVLVHWRSE-----RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKL---FSLRKLALREVCADDQAIAS---L 181 (412)
Q Consensus 115 ~l~~L~l~~~~~~-----~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l---~~L~~L~L~~~~~~~~~l~~---l 181 (412)
+++++.+...... ...++..+..+++|++|++++|.+... .....+ ++|+.|+++++.+++..... .
T Consensus 52 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~ 131 (319)
T cd00116 52 SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG 131 (319)
T ss_pred CceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence 4666666553221 011223344566777777777766422 112222 44888888877775443332 2
Q ss_pred HcCC-CCccEEEeeccCCcce----e--eccCCCCccEEEEeeCCC----CceEE---EecCcccEEEeeeeecc-----
Q 015171 182 ISGC-PLIEYLEIRSCEGLES----L--DLVNLSNLKEIILVNTSD----IKRVE---IKTSNVNALAIHQTYLF----- 242 (412)
Q Consensus 182 ~~~~-p~Le~L~l~~c~~~~~----~--~i~~l~~L~~L~i~~c~~----l~~~~---~~~p~L~~L~l~~~~~~----- 242 (412)
+..+ ++|++|++++|..... + .+..+++|+.|++.+|.- +..+. ...++|+.|+++++...
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3444 7778888887764311 1 122346788888777611 11111 12357888888777521
Q ss_pred ceEEeccCCCCCcEEEeeccccchHHHHHhhcC----CCCccEEeccccccc----cccc---ccccccceEEEecCcc
Q 015171 243 PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISK----LPLLEYLSMTKCHKL----TSVR---ISSPCLKTLILECCDK 310 (412)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~c~~l----~~l~---~~~~~L~~L~l~~c~~ 310 (412)
.+...+..+++|++|+++++.+.+..+..+... .+.|++|++.+|... ..+. ...++|+.++++++..
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence 112235567889999998888877555544433 378999999887432 1111 1336778888877654
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=7.8e-09 Score=95.13 Aligned_cols=172 Identities=22% Similarity=0.157 Sum_probs=100.5
Q ss_pred CCceEEEEEeCC-CccccCCccccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++..- .....+-..+..+++|+.|+|+.+.+..+ .....+++||.|.|++|.++...+..++..||+|+
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 367777766521 11112222334567888888888766544 33346788888888888888888888888888888
Q ss_pred EEEeeccCCccee--eccCCCCccEEEEeeCCCC--ceE--EEecCcccEEEeeeeeccce-------EEeccCCCCCcE
Q 015171 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDI--KRV--EIKTSNVNALAIHQTYLFPI-------EVNVSSCGNLKC 256 (412)
Q Consensus 190 ~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l--~~~--~~~~p~L~~L~l~~~~~~~~-------~~~~~~~~~L~~ 256 (412)
.|.+..+...... ...-+..|+.|++++..-+ ..+ .-..|.|+.|.++.+...++ ......+++|+.
T Consensus 226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~ 305 (505)
T KOG3207|consen 226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEY 305 (505)
T ss_pred HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccccee
Confidence 8888887533211 1111467888888776221 111 22566777776666551111 111234677777
Q ss_pred EEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 257 LKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
|++..+++.+.....-+..+++|+.|.+.
T Consensus 306 L~i~~N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 306 LNISENNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred eecccCccccccccchhhccchhhhhhcc
Confidence 77776666442222224445666666544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.52 E-value=1.7e-07 Score=95.66 Aligned_cols=69 Identities=17% Similarity=0.097 Sum_probs=36.3
Q ss_pred CccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEeccee----eecccccccceEEEEEe
Q 015171 278 LLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~ 348 (412)
+|+.|+++++ .++.++..+++|+.|+++++. +..++....+|+.|.+.++.. ..+.++++|+.+.++.+
T Consensus 383 ~L~~LdLs~N-~Lt~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 383 GLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ccceEEecCC-cccCCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 5666666553 334444444566666666654 223332223455555544333 23445667777777655
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.51 E-value=5.7e-07 Score=91.82 Aligned_cols=194 Identities=16% Similarity=0.114 Sum_probs=92.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+-..|+++.. ....+|..+. ++|+.|.+.++.+...+ ...++|++|++++|.++. +. ...++|++|++.
T Consensus 202 ~~~~LdLs~~--~LtsLP~~l~--~~L~~L~L~~N~Lt~LP--~lp~~Lk~LdLs~N~Lts--LP---~lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGES--GLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTS--LP---VLPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCC--CCCcCCcchh--cCCCEEEccCCcCCCCC--CCCCCCcEEEecCCccCc--cc---Ccccccceeecc
Confidence 4555666553 2335676554 36788888877665322 235778888887776631 11 123567777776
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE----------------eccCC-CCCcEE
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----------------NVSSC-GNLKCL 257 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~----------------~~~~~-~~L~~L 257 (412)
+|... .+.- ...+|+.|.+.++ .+..++...|+|+.|+++++....++. .++.+ ++|+.|
T Consensus 271 ~N~L~-~Lp~-lp~~L~~L~Ls~N-~Lt~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~L 347 (788)
T PRK15387 271 SNPLT-HLPA-LPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQEL 347 (788)
T ss_pred CCchh-hhhh-chhhcCEEECcCC-ccccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceE
Confidence 66421 1110 1134555555554 233333334556666665554111100 01111 245555
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEecc
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGD 329 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~ 329 (412)
++++|.+.. ++. ..++|+.|+++++ .+..++..+.+|+.|+++++. +..++...++|+.|.+.++
T Consensus 348 dLS~N~Ls~--LP~---lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~-Lt~LP~l~s~L~~LdLS~N 412 (788)
T PRK15387 348 SVSDNQLAS--LPT---LPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKELMVSGN 412 (788)
T ss_pred ecCCCccCC--CCC---CCcccceehhhcc-ccccCcccccccceEEecCCc-ccCCCCcccCCCEEEccCC
Confidence 555554443 111 1234555555442 233344344456666665543 2233333345555555554
No 18
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.46 E-value=4.7e-08 Score=63.39 Aligned_cols=37 Identities=41% Similarity=0.762 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
++.||+|++.+||++|+.+|+++++.|||+|+.+..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 5689999999999999999999999999999987654
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.46 E-value=1.9e-08 Score=90.13 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=112.3
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhC--CceEEEEEeC--CCccccCCccccCCCCeeEEEEeceeecCCCCCc
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIES--EVKELVLVHW--RSERRNLPEIIFYVESLHVLELSYCKLQQPSENV 158 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~--~l~~L~l~~~--~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~ 158 (412)
..+.++.++.. +-.....+|+....+. .+++.+++.- .....++|..+..+ .....
T Consensus 30 ~s~~~l~lsgn-----t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l---------------~~aL~ 89 (382)
T KOG1909|consen 30 DSLTKLDLSGN-----TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML---------------SKALL 89 (382)
T ss_pred CceEEEeccCC-----chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH---------------HHHHh
Confidence 45566655533 3355566777665553 5566655541 11222333321100 02344
Q ss_pred cCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccCCcc----e-----------eeccCCCCccEEEEeeC--
Q 015171 159 KLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLE----S-----------LDLVNLSNLKEIILVNT-- 218 (412)
Q Consensus 159 ~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~----~-----------~~i~~l~~L~~L~i~~c-- 218 (412)
.+|.|++|+|+++.+ ....+..++++|..|++|.+.+|.--. . -.+.+-+.|+.+....+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 566777777777777 345677888889999999998884321 0 01222356666655544
Q ss_pred C--CCce---EEEecCcccEEEeeeeeccce-----EEeccCCCCCcEEEeeccccchH---HHHHhhcCCCCccEEecc
Q 015171 219 S--DIKR---VEIKTSNVNALAIHQTYLFPI-----EVNVSSCGNLKCLKFDFLPIEDE---WLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 219 ~--~l~~---~~~~~p~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~ 285 (412)
. +-.. .....|.|+.+.+..+...+- ...+..||+|+.|++..|.++.. .+...++.+|+|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 0 0000 111346677777766552221 12345677777777777666542 334445666777777777
Q ss_pred ccccc--------ccccccccccceEEEecCcc
Q 015171 286 KCHKL--------TSVRISSPCLKTLILECCDK 310 (412)
Q Consensus 286 ~c~~l--------~~l~~~~~~L~~L~l~~c~~ 310 (412)
+|..- ..+....|+|+.|.+.+|..
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 76221 11223456677776666654
No 20
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=5.7e-08 Score=87.13 Aligned_cols=213 Identities=19% Similarity=0.244 Sum_probs=142.1
Q ss_pred CCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEe---CHH------HHHHHHcCCCCccEEEeeccCCcce
Q 015171 137 YVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCA---DDQ------AIASLISGCPLIEYLEIRSCEGLES 201 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~---~~~------~l~~l~~~~p~Le~L~l~~c~~~~~ 201 (412)
...++++++|+++.+..- .....-++|+..+++++-. .++ .+..-+..||.|++|+|+++..-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 346677788877766432 2334455677777766543 111 2344466899999999999965321
Q ss_pred -e-----eccCCCCccEEEEeeCC-------C---------CceEEEecCcccEEEeeeeeccc-----eEEeccCCCCC
Q 015171 202 -L-----DLVNLSNLKEIILVNTS-------D---------IKRVEIKTSNVNALAIHQTYLFP-----IEVNVSSCGNL 254 (412)
Q Consensus 202 -~-----~i~~l~~L~~L~i~~c~-------~---------l~~~~~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L 254 (412)
+ -+.++.+|++|.+.+|. . .....-+.|+|+.+....+.... ....+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 1 14457899999999991 1 11112256889999998887221 11235678999
Q ss_pred cEEEeeccccchH---HHHHhhcCCCCccEEecccccc-------cccccccccccceEEEecCccc--------ceeec
Q 015171 255 KCLKFDFLPIEDE---WLCNGISKLPLLEYLSMTKCHK-------LTSVRISSPCLKTLILECCDKL--------IQVEI 316 (412)
Q Consensus 255 ~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~c~~-------l~~l~~~~~~L~~L~l~~c~~l--------~~~~~ 316 (412)
+.+.+..+.+... .+..-+..||+|+.|+|.+..- +......++.|+.|++.+|-.- ..+..
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 9999998887653 3344567899999999998411 1111225578999999999652 23445
Q ss_pred cCCCeeeEEEeccee---------eecccccccceEEEEEec
Q 015171 317 ETPNLSIFKYHGDLI---------SFSSNALSLSETSLCFSS 349 (412)
Q Consensus 317 ~~~~L~~l~~~~~~~---------~~l~~~~~L~~l~i~~~~ 349 (412)
..|+|+.+.+.|+.. ..+..-+.|++|.++.++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 688999998887765 455567889999997773
No 21
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.38 E-value=3.3e-07 Score=57.11 Aligned_cols=34 Identities=38% Similarity=0.692 Sum_probs=31.5
Q ss_pred CCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 15 LPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 15 LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
||+|++.+||++|+.+|+++++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987543
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.34 E-value=3.8e-09 Score=101.22 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=46.8
Q ss_pred CCceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++.-.|+++. .....+|..++ ++..|-.|+|+++++.. ||....+..|++|.|+++...-..+.. +.+..+|+.|
T Consensus 126 Kn~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vL 202 (1255)
T KOG0444|consen 126 KNSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVL 202 (1255)
T ss_pred cCcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhhhh
Confidence 3555555554 33446666544 46777778888877643 366667777788888777653333332 2334455555
Q ss_pred Eeecc
Q 015171 192 EIRSC 196 (412)
Q Consensus 192 ~l~~c 196 (412)
.+++.
T Consensus 203 hms~T 207 (1255)
T KOG0444|consen 203 HMSNT 207 (1255)
T ss_pred hcccc
Confidence 55543
No 23
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.31 E-value=7.8e-09 Score=99.15 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=82.4
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.++-|.+.. .....+|..+..+.+|++|.+..+++... .....+|.|+.+.+..+.....++..-+.....|..|+|
T Consensus 33 ~~~WLkLnr--t~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL 110 (1255)
T KOG0444|consen 33 QMTWLKLNR--TKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL 110 (1255)
T ss_pred heeEEEech--hhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence 344444443 33446677777777777777777655433 445566777777776666644444433445556666666
Q ss_pred eccCCccee-eccCCCCccEEEEeeCCCCce----EEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHH
Q 015171 194 RSCEGLESL-DLVNLSNLKEIILVNTSDIKR----VEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEW 268 (412)
Q Consensus 194 ~~c~~~~~~-~i~~l~~L~~L~i~~c~~l~~----~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 268 (412)
+.+..-+.. .+....++-.|++++. ++.. +.++...|-.|+++.+.-...+..+..+.+|+.|.|+++.+....
T Consensus 111 ShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 111 SHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred chhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 655321100 1111234445555443 2222 223444455555555553333334444555555555555544433
Q ss_pred HHHhhcCCCCccEEeccc
Q 015171 269 LCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~ 286 (412)
+.+ +..+.+|+.|.+++
T Consensus 190 LrQ-LPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 190 LRQ-LPSMTSLSVLHMSN 206 (1255)
T ss_pred Hhc-Cccchhhhhhhccc
Confidence 332 22233344444443
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.30 E-value=5.6e-07 Score=92.22 Aligned_cols=215 Identities=17% Similarity=0.141 Sum_probs=93.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+..+|++... ....+|..+. ++|+.|+++++.+...+. ..+++|+.|+++++.++. +..-+ .+.|+.|+++
T Consensus 179 ~~~~L~L~~~--~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKIL--GLTTIPACIP--EQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPATL--PDTIQEMELS 249 (754)
T ss_pred CceEEEeCCC--CcCcCCcccc--cCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChhh--hccccEEECc
Confidence 4566666542 2234554332 456777777765543221 123466666666665521 11101 1345555555
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEe-cCcccEEEeeee---------------------eccceEEeccCCC
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIK-TSNVNALAIHQT---------------------YLFPIEVNVSSCG 252 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~-~p~L~~L~l~~~---------------------~~~~~~~~~~~~~ 252 (412)
+|... .+...-..+|+.|+++++ .+..++.. .++|+.|+++++ ....++. ...+
T Consensus 250 ~N~L~-~LP~~l~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~--~l~~ 325 (754)
T PRK15370 250 INRIT-ELPERLPSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE--TLPP 325 (754)
T ss_pred CCccC-cCChhHhCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc--cccc
Confidence 55321 110000124444444432 22222211 124444444443 3111111 1124
Q ss_pred CCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc-cccccceEEEecCcccceeeccC-CCeeeEEEecce
Q 015171 253 NLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDL 330 (412)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~ 330 (412)
+|+.|++++|.+.. ++..+ .++|+.|+++++. +..++. .+++|+.|+|++|.. ..++... +.|+.+.+.++.
T Consensus 326 sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~L-t~LP~~l~~sL~~LdLs~N~ 399 (754)
T PRK15370 326 GLKTLEAGENALTS--LPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNAL-TNLPENLPAALQIMQASRNN 399 (754)
T ss_pred cceeccccCCcccc--CChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCcC-CCCCHhHHHHHHHHhhccCC
Confidence 56666666655443 22111 2567777777652 333332 235677777777642 2222211 134444444433
Q ss_pred e--------eecccccccceEEEEEe
Q 015171 331 I--------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 331 ~--------~~l~~~~~L~~l~i~~~ 348 (412)
. .....++.+..+.+..+
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeCC
Confidence 2 12223456666666554
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.19 E-value=4.1e-07 Score=76.07 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=26.0
Q ss_pred cCcccEEEeeeeec--cceEEeccCCCCCcEEEeeccccchHH--HHHhhcCCCCccEEecccc
Q 015171 228 TSNVNALAIHQTYL--FPIEVNVSSCGNLKCLKFDFLPIEDEW--LCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 228 ~p~L~~L~l~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~c 287 (412)
+|+|+.|.++++.. ......+..+|+|+.|++.+|++.... -..++..+|+|+.|+-...
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 45566666655541 111234556778888888777765421 1224556788888876553
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=7.5e-07 Score=90.40 Aligned_cols=148 Identities=19% Similarity=0.198 Sum_probs=100.5
Q ss_pred CCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.+|++|+++|...-.. ....-||+|++|.+.+..+..+.+..+..++|+|..|+|+++.--.-..++.+.+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 4566666666322111 334568999999999998866668888899999999999988554444566678888887
Q ss_pred EeeCCCCce---E--EEecCcccEEEeeeeeccceE-------EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 215 LVNTSDIKR---V--EIKTSNVNALAIHQTYLFPIE-------VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 215 i~~c~~l~~---~--~~~~p~L~~L~l~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+.+- .+.. + -....+|+.|+++........ ..-..+|+|+.|+.++..+..+.+..++..-|+|+..
T Consensus 202 mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNL-EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCC-CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 7654 1111 0 125678888888876521111 1123488999999999988888888877777877777
Q ss_pred ecccc
Q 015171 283 SMTKC 287 (412)
Q Consensus 283 ~l~~c 287 (412)
..-+|
T Consensus 281 ~~~~~ 285 (699)
T KOG3665|consen 281 AALDC 285 (699)
T ss_pred hhhhh
Confidence 65543
No 27
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.09 E-value=3.1e-07 Score=90.92 Aligned_cols=192 Identities=23% Similarity=0.249 Sum_probs=112.3
Q ss_pred hCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEece-eecCC------CCCccCcccceeEeeeEE-eCHHHHHHHHc
Q 015171 113 ESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYC-KLQQP------SENVKLFSLRKLALREVC-ADDQAIASLIS 183 (412)
Q Consensus 113 ~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~-~~~~~------~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~ 183 (412)
.++++++.+..+.. ....+-.....++.|+.|++++| ..... .....+++|+.|+++++. +++.++..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35788888876432 21223345667889999999873 22111 344567889999998888 58888888888
Q ss_pred CCCCccEEEeeccCCcceeec----cCCCCccEEEEeeCCCCc-----eEEEecCcccEEEeeeeec-------------
Q 015171 184 GCPLIEYLEIRSCEGLESLDL----VNLSNLKEIILVNTSDIK-----RVEIKTSNVNALAIHQTYL------------- 241 (412)
Q Consensus 184 ~~p~Le~L~l~~c~~~~~~~i----~~l~~L~~L~i~~c~~l~-----~~~~~~p~L~~L~l~~~~~------------- 241 (412)
.||+|+.|.+.+|..+....+ ..+++|++|+++.|..+. .+...+|+|+.|.+.....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 899999999888876543322 236889999999884432 2223466666655443321
Q ss_pred -----cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCccc
Q 015171 242 -----FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKL 311 (412)
Q Consensus 242 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l 311 (412)
.........+++++.+.+.++...+......+.+||+|. ..+..+. ..+..++.|++..|...
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~------~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL------CRSDSLRVLNLSDCRLV 414 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh------ccCCccceEecccCccc
Confidence 011122345666666666555533333334445555552 2221110 01122677777777664
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.04 E-value=1.1e-05 Score=82.85 Aligned_cols=156 Identities=17% Similarity=0.081 Sum_probs=91.1
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
.+...|++++..+...|.. -.++|+.|+|+++.++. +..-+ +++|+.|++++|.. ..+...-.++|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N~L-tsLP~~l~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPAC-IPEQITTLILDNNELKS--LPENL--QGNIKTLYANSNQL-TSIPATLPDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCCc--CChhh--ccCCCEEECCCCcc-ccCChhhhccccEEECcCC
Confidence 4567888888766543321 13579999999987742 22111 36899999998853 3322111358999999988
Q ss_pred CCCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc-c
Q 015171 219 SDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-S 296 (412)
Q Consensus 219 ~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~ 296 (412)
.+..++. -..+|+.|+++++.-..++..+ .++|+.|++++|.+.. ++..+ .++|+.|+++++ .++.++. .
T Consensus 252 -~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N-~Lt~LP~~l 323 (754)
T PRK15370 252 -RITELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSN-SLTALPETL 323 (754)
T ss_pred -ccCcCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCC-ccccCCccc
Confidence 3334332 2347999999887633322222 3589999999887664 11111 124555555553 2222322 2
Q ss_pred ccccceEEEecC
Q 015171 297 SPCLKTLILECC 308 (412)
Q Consensus 297 ~~~L~~L~l~~c 308 (412)
+++|+.|++++|
T Consensus 324 ~~sL~~L~Ls~N 335 (754)
T PRK15370 324 PPGLKTLEAGEN 335 (754)
T ss_pred cccceeccccCC
Confidence 345555555554
No 29
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=1e-06 Score=77.61 Aligned_cols=180 Identities=18% Similarity=0.157 Sum_probs=127.0
Q ss_pred CCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
..++++++..... ..-++...+.++|.|+.|+|+.+.+..+ .......+|++|.|.+...+.......+...|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 3788999887321 2223334456789999999999988765 222567799999999988888888888999999999
Q ss_pred EEeeccCC----cceeeccC-CCCccEEEEeeC-----CCCceEEEecCcccEEEeeeee--ccceEEeccCCCCCcEEE
Q 015171 191 LEIRSCEG----LESLDLVN-LSNLKEIILVNT-----SDIKRVEIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLK 258 (412)
Q Consensus 191 L~l~~c~~----~~~~~i~~-l~~L~~L~i~~c-----~~l~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~ 258 (412)
|+++.+.. .+.-.+.. .+.++.|....| .+...+..-+||+..+.+..++ ..........+|.+-.|.
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 99988732 11111221 257888888888 2333444468999999888876 222234456678888899
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++.+++.+.+-...+..||.|..|.+...+....+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 98888876544455788999999999986554433
No 30
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.99 E-value=5.5e-07 Score=90.42 Aligned_cols=68 Identities=28% Similarity=0.206 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEe
Q 015171 102 SLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA 173 (412)
Q Consensus 102 ~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~ 173 (412)
..+..|+..+ .+++.+......- ..+|..++...+|++|....|.+... +....+.+|++|+|..+.+
T Consensus 254 ~~lp~wi~~~--~nle~l~~n~N~l--~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L 322 (1081)
T KOG0618|consen 254 SNLPEWIGAC--ANLEALNANHNRL--VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL 322 (1081)
T ss_pred hcchHHHHhc--ccceEecccchhH--HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence 4455777543 3677776655321 34444444444444444444443322 2223344444444444433
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.98 E-value=9.8e-08 Score=77.26 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=74.9
Q ss_pred cCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc-eeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~l~~L~~L 213 (412)
++..+.+.|.|+.+.+... +....+.+|+.|+++++.+. .+..-+++.|.|+.|.+..+.-.. .-.+.++|.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhh
Confidence 3444444444554443322 33444555555555554431 122224444555555444332110 0122334445555
Q ss_pred EEeeC----CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 214 ILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 214 ~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++... ..+..-......|+.|+++++...-.+..++.+++|+.|.+..+++.. ++.-+..+.+|+.|.+.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhccc
Confidence 44433 011111112345666677777655556677888888888888777654 444456677888888877
No 32
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=1.1e-06 Score=86.93 Aligned_cols=124 Identities=22% Similarity=0.300 Sum_probs=87.6
Q ss_pred CCCCeeEEEEeceeecCC----CCCccCcccceeEeeeE-Ee---CHHHHHHHHcCCCCccEEEeeccCCcceeecc---
Q 015171 137 YVESLHVLELSYCKLQQP----SENVKLFSLRKLALREV-CA---DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--- 205 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~-~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~--- 205 (412)
.++.|+.|.+.+|..... +....+++|+.|+++++ .. .......+...|++|+.|+++.|..+.+..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 479999999999844322 56778999999999873 22 22234457788999999999999876554432
Q ss_pred -CCCCccEEEEeeCCCCce-----EEEecCcccEEEeeeeecc---ceEEeccCCCCCcEEEee
Q 015171 206 -NLSNLKEIILVNTSDIKR-----VEIKTSNVNALAIHQTYLF---PIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 206 -~l~~L~~L~i~~c~~l~~-----~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~ 260 (412)
.|++|+.|.+.+|..+.. +...+|+|++|+++++... .......++++|+.|.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 279999999988954332 3346899999999988721 112224557877776654
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.87 E-value=3.4e-07 Score=91.85 Aligned_cols=210 Identities=21% Similarity=0.231 Sum_probs=109.9
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++.++++.. ....+|.++..|.+|+.++...+.+..- .......+|+.|....+.+ +-+.........|+.|+
T Consensus 241 ~nl~~~dis~n--~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel--~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 241 LNLQYLDISHN--NLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNEL--EYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred ccceeeecchh--hhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhh--hhCCCcccccceeeeee
Confidence 37888888864 3457889999999999999999877332 3445667888888777654 22233345567888999
Q ss_pred eeccCCcce----eecc-----------------------CCCCccEEEEeeC---CCCceEEEecCcccEEEeeeeecc
Q 015171 193 IRSCEGLES----LDLV-----------------------NLSNLKEIILVNT---SDIKRVEIKTSNVNALAIHQTYLF 242 (412)
Q Consensus 193 l~~c~~~~~----~~i~-----------------------~l~~L~~L~i~~c---~~l~~~~~~~p~L~~L~l~~~~~~ 242 (412)
+..+..... +.+. ..+.|+.|.+.+. +..-.+...+++|+.|+++.+.-.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 877643210 0000 0122333333322 111111124455666666655422
Q ss_pred ceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc--cccccceEEEecCcccc-eee--c
Q 015171 243 PIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLI-QVE--I 316 (412)
Q Consensus 243 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~-~~~--~ 316 (412)
.++ ..+.+++.|++|+++|+.+.. ++.-...++.|++|...+ ..+..+|+ ..+.|+.++++...--. .++ .
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecccchhhhhhhhhhC
Confidence 221 234455566666666665544 222233444455444433 12222322 34556666665433211 111 1
Q ss_pred cCCCeeeEEEecce
Q 015171 317 ETPNLSIFKYHGDL 330 (412)
Q Consensus 317 ~~~~L~~l~~~~~~ 330 (412)
..|+|+.|.+.|..
T Consensus 474 p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNT 487 (1081)
T ss_pred CCcccceeeccCCc
Confidence 22567777766655
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.75 E-value=6.7e-06 Score=68.80 Aligned_cols=60 Identities=22% Similarity=0.205 Sum_probs=17.7
Q ss_pred cCcccEEEeeeeeccceEEec-cCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNV-SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
.++|++|.++++....+...+ ..+|+|++|.++++.+.+-.-...+..+|+|+.|++.+.
T Consensus 63 L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred hhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 344555555554422211112 245666666666666544111122345666666666653
No 35
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=9.9e-06 Score=82.41 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=70.6
Q ss_pred CCCccEEEeeccCCcc-ee--eccC-CCCccEEEEeeC----CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcE
Q 015171 185 CPLIEYLEIRSCEGLE-SL--DLVN-LSNLKEIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKC 256 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~-~~--~i~~-l~~L~~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~ 256 (412)
-.+|+.|++++..... .+ .+.. +|+|++|.+.+- +.+..+..++|||.+|+++++.... ...+++++||+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-LSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-cHHHhccccHHH
Confidence 3467777777754332 11 2222 678888877763 2333444467778888887776333 245667777777
Q ss_pred EEeeccccch-HHHHHhhcCCCCccEEeccccccccc---------ccccccccceEEEecCc
Q 015171 257 LKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTS---------VRISSPCLKTLILECCD 309 (412)
Q Consensus 257 L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~---------l~~~~~~L~~L~l~~c~ 309 (412)
|.+.+-.+.. ..+.. +.++.+|+.|+++.-..... .....|+|+.|+.++-.
T Consensus 200 L~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 7777666655 22333 44577777887776321111 11245666666666543
No 36
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.53 E-value=0.0003 Score=73.77 Aligned_cols=275 Identities=18% Similarity=0.134 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHhccccCCCCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeE
Q 015171 64 SKEILTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHV 143 (412)
Q Consensus 64 ~~~~~~~v~~~ll~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~ 143 (412)
..-+...|++.++..-........+.++ .-...+.-|+.......-+. .+..........|. ..+....+.
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmH-------DvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~-~~~~~~~rr 527 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDEGRKETVKMH-------DVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQ-VKSWNSVRR 527 (889)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEee-------HHHHHHHHHHhccccccccc-eEEECCcCcccccc-ccchhheeE
Confidence 4445566766663221111233333333 22344555555444333333 22221112223333 233456677
Q ss_pred EEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCC
Q 015171 144 LELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (412)
Q Consensus 144 L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~ 220 (412)
+.+.++.....+....++.|++|-+.++.. -......++...|.|..|++++|.....+ .|..+-+||.|+++++ +
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~ 606 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-G 606 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-C
Confidence 777776655445666777888888888752 11222334567899999999988776654 3555678888888766 4
Q ss_pred CceEEEecC---cccEEEeeeeeccce-EEeccCCCCCcEEEeeccccc-hHHHHHhhcCCCCccEEecccccc------
Q 015171 221 IKRVEIKTS---NVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYLSMTKCHK------ 289 (412)
Q Consensus 221 l~~~~~~~p---~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~c~~------ 289 (412)
+..++.... .|.+|++........ .-....+++|++|.+...... +.....-+..+.+|+.+....+..
T Consensus 607 I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l 686 (889)
T KOG4658|consen 607 ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL 686 (889)
T ss_pred ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhh
Confidence 444444333 445555544431111 122233677777777544311 111222223444444444433111
Q ss_pred --------------------cc--cccccccccceEEEecCcccceeec--------c-CCCeeeEEEeccee----eec
Q 015171 290 --------------------LT--SVRISSPCLKTLILECCDKLIQVEI--------E-TPNLSIFKYHGDLI----SFS 334 (412)
Q Consensus 290 --------------------l~--~l~~~~~~L~~L~l~~c~~l~~~~~--------~-~~~L~~l~~~~~~~----~~l 334 (412)
.. .......+|+.|.|.+|...+.... . +|++..+.+.++.. ...
T Consensus 687 ~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~ 766 (889)
T KOG4658|consen 687 LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL 766 (889)
T ss_pred hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh
Confidence 00 0111446778888888877531111 1 23333333333322 334
Q ss_pred ccccccceEEEEEe
Q 015171 335 SNALSLSETSLCFS 348 (412)
Q Consensus 335 ~~~~~L~~l~i~~~ 348 (412)
.-+++|+.+.+..+
T Consensus 767 ~f~~~L~~l~l~~~ 780 (889)
T KOG4658|consen 767 LFAPHLTSLSLVSC 780 (889)
T ss_pred hccCcccEEEEecc
Confidence 45778888888554
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.42 E-value=2.3e-05 Score=77.26 Aligned_cols=201 Identities=16% Similarity=0.147 Sum_probs=108.7
Q ss_pred ccCCCCceeEEEEEecCCCCCChhhHHHHHH-HHHhCCceEEEEEeCCC-ccccCCccccCCCCeeEEEEeceeecCCCC
Q 015171 79 QRKMISIKKFSLELDLINSPENASLAGRCLG-LAIESEVKELVLVHWRS-ERRNLPEIIFYVESLHVLELSYCKLQQPSE 156 (412)
Q Consensus 79 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~-~~~~~~l~~L~l~~~~~-~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~ 156 (412)
-..+.+++.|+.-.... .+...+...-. ..+-...+.+.+..... .+.+ |-.++.+++|++|.+.+|.+.....
T Consensus 51 g~~g~~~~~f~a~~s~~---ads~vl~qLq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G 126 (1096)
T KOG1859|consen 51 GLSGAPVDYFRAYVSDN---ADSRVLEQLQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG 126 (1096)
T ss_pred ccCCCCCceeEEecCCc---ccchHHHHHHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh
Confidence 34567788887665533 33333332211 11123455555554322 2333 7789999999999999997654311
Q ss_pred CccC---------------------------------cccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee
Q 015171 157 NVKL---------------------------------FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD 203 (412)
Q Consensus 157 ~~~l---------------------------------~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~ 203 (412)
...+ ..|.+.+.+++.. ..+..-+.-.|.||.|+|+.+...+.-.
T Consensus 127 L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~ 204 (1096)
T KOG1859|consen 127 LQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDN 204 (1096)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHH
Confidence 1111 1223333333332 0111112234677788887776544334
Q ss_pred ccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccE
Q 015171 204 LVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEY 281 (412)
Q Consensus 204 i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (412)
+.-|+.|++|+++.+ ..+..+......|..|.+.++.-.. ...+.++.+|+.|++++|-+.+..-...+..+..|+.
T Consensus 205 Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~t-L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTT-LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred HHhcccccccccccchhccccccchhhhhheeeeecccHHHh-hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 445678888888755 3333333333347777777776222 3355677778888887776655322223344556667
Q ss_pred Eeccc
Q 015171 282 LSMTK 286 (412)
Q Consensus 282 L~l~~ 286 (412)
|.|.+
T Consensus 284 L~LeG 288 (1096)
T KOG1859|consen 284 LWLEG 288 (1096)
T ss_pred HhhcC
Confidence 77766
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.38 E-value=3.5e-05 Score=80.60 Aligned_cols=198 Identities=22% Similarity=0.244 Sum_probs=125.1
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
.+.++.|+++. .....++|..++.+-+|++|++++..+. .|....++..|.+|++.....-. .+..+....++|++|
T Consensus 570 m~~LrVLDLs~-~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSG-NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCC-CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccchhhhcccccEE
Confidence 35777787776 3355689999999999999999987664 34667788888888888765411 124445568899999
Q ss_pred EeeccC-Cccee---eccCCCCccEEEEeeCCC--CceEEEecCccc----EEEeeeeeccceEEeccCCCCCcEEEeec
Q 015171 192 EIRSCE-GLESL---DLVNLSNLKEIILVNTSD--IKRVEIKTSNVN----ALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (412)
Q Consensus 192 ~l~~c~-~~~~~---~i~~l~~L~~L~i~~c~~--l~~~~~~~p~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (412)
.+.... ..+.. .+..+.+|+.+.+..++. +..+ ...++|. .+.+.++........+..+.+|+.|.+..
T Consensus 648 ~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l-~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 648 RLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDL-LGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred EeeccccccchhhHHhhhcccchhhheeecchhHhHhhh-hhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 887654 11111 233456677777655532 0111 1233333 22222233333445667889999999988
Q ss_pred cccchHHHH---H-hhc-CCCCccEEecccccccccccc--cccccceEEEecCcccce
Q 015171 262 LPIEDEWLC---N-GIS-KLPLLEYLSMTKCHKLTSVRI--SSPCLKTLILECCDKLIQ 313 (412)
Q Consensus 262 ~~~~~~~~~---~-~~~-~~~~L~~L~l~~c~~l~~l~~--~~~~L~~L~l~~c~~l~~ 313 (412)
+.+.+.... . ... .|+++..+.+.+|.....+.. .+|+|+.|++..|..+++
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 877542111 0 011 266777777777877766553 678999999999988643
No 39
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.37 E-value=2.3e-05 Score=71.89 Aligned_cols=91 Identities=20% Similarity=0.212 Sum_probs=57.2
Q ss_pred hcCCCCccEEecccccccccccc----cccccceEEEecCccc---ceeeccCCCeeeEEEeccee-----eeccccccc
Q 015171 273 ISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKL---IQVEIETPNLSIFKYHGDLI-----SFSSNALSL 340 (412)
Q Consensus 273 ~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l---~~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L 340 (412)
+..+|+|++|++++. .++.+.. ....++.|++.....- .....+..+|+.|.+.|... -.++.+.+|
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 556788888888873 3333322 3446677776654331 13334566788888888776 567778889
Q ss_pred ceEEEEEeccchh-hHHHHHHHHHh
Q 015171 341 SETSLCFSSHLMV-NIEWVVEYFEI 364 (412)
Q Consensus 341 ~~l~i~~~~~~~~-~~~~~~~~~~~ 364 (412)
.++.+-.+...|. -..|+.+.+++
T Consensus 349 ~~l~l~~Np~~CnC~l~wl~~Wlr~ 373 (498)
T KOG4237|consen 349 STLNLLSNPFNCNCRLAWLGEWLRK 373 (498)
T ss_pred eeeehccCcccCccchHHHHHHHhh
Confidence 9998866644333 45666665544
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.18 E-value=5.4e-05 Score=67.10 Aligned_cols=20 Identities=20% Similarity=0.122 Sum_probs=10.2
Q ss_pred cCCccccCCCCeeEEEEece
Q 015171 130 NLPEIIFYVESLHVLELSYC 149 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~ 149 (412)
.+|..+..+++|..+.++.|
T Consensus 205 ~l~f~l~~f~~l~~~~~s~~ 224 (490)
T KOG1259|consen 205 RLSFNLNAFRNLKTLKFSAL 224 (490)
T ss_pred ccccchHHhhhhheeeeecc
Confidence 33433444556666665554
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.9e-05 Score=68.69 Aligned_cols=150 Identities=13% Similarity=0.063 Sum_probs=89.3
Q ss_pred CCeeEEEEeceeecCC----CCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeecc--CCCCcc
Q 015171 139 ESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLV--NLSNLK 211 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~--~l~~L~ 211 (412)
.-++-|.+.+|.++.. .....+..++.|+|.++.+ +.+.+..++.+.|.|+.|.|+.+.-...+.-. ...+|+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3455666777776554 2234567889999999988 67778888999999999999877543332111 135788
Q ss_pred EEEEeeC----CCCceEEEecCcccEEEeeeeeccceEE----eccCCCCCcEEEeeccccc-hHHHHHhhcCCCCccEE
Q 015171 212 EIILVNT----SDIKRVEIKTSNVNALAIHQTYLFPIEV----NVSSCGNLKCLKFDFLPIE-DEWLCNGISKLPLLEYL 282 (412)
Q Consensus 212 ~L~i~~c----~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L 282 (412)
.|.+++. ...+...-+.|.++.|.++.+....+-. .-.--+.++.|++..|... +.....+...|||+..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 8877765 2222333355666666666553111000 0011235555666555432 22344455667888888
Q ss_pred eccccc
Q 015171 283 SMTKCH 288 (412)
Q Consensus 283 ~l~~c~ 288 (412)
.+..|+
T Consensus 205 ~v~e~P 210 (418)
T KOG2982|consen 205 FVCEGP 210 (418)
T ss_pred eeecCc
Confidence 877663
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.14 E-value=3.6e-06 Score=68.33 Aligned_cols=147 Identities=19% Similarity=0.264 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++..|.++. .....+|+.+....+|+.|+++++.+. .+.....++.|+.|++.-++. ..+..-+.++|.||.|++
T Consensus 34 ~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhccc--CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhc
Confidence 344444443 233455666666666777777666553 234555666666666654433 112222455667777776
Q ss_pred eccCCccee---eccCCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
.++.-.+.. .+..+.+|+.|.+.+. .++-++- ...+|+.|.+.++.-...+..++.+..|++|++.++.+..
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeee
Confidence 665432211 0111234555555443 1222221 2345555555555544445566777888888887776543
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.11 E-value=0.00058 Score=60.71 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=10.3
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.+++.|+.+.+..+
T Consensus 393 ~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 393 NHIGNLPCLETLRLTGN 409 (490)
T ss_pred cccccccHHHHHhhcCC
Confidence 45556666776666544
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.01 E-value=0.0014 Score=62.05 Aligned_cols=136 Identities=15% Similarity=0.218 Sum_probs=66.4
Q ss_pred cCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeee
Q 015171 159 KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQ 238 (412)
Q Consensus 159 ~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~ 238 (412)
.+++++.|++++|.+. .+.. --++|++|.+.+|..+..+.-.-.++|+.|.+.+|..+..+ .++|+.|.+.+
T Consensus 50 ~~~~l~~L~Is~c~L~--sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L~~ 121 (426)
T PRK15386 50 EARASGRLYIKDCDIE--SLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEIKG 121 (426)
T ss_pred HhcCCCEEEeCCCCCc--ccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc---ccccceEEeCC
Confidence 3567777777766431 1111 12257777777776654332101246777777777554433 24566666654
Q ss_pred eeccceEEeccCCC-CCcEEEeeccccchHHHHHhhcCC-CCccEEecccccccccccccccccceEEEecC
Q 015171 239 TYLFPIEVNVSSCG-NLKCLKFDFLPIEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRISSPCLKTLILECC 308 (412)
Q Consensus 239 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c 308 (412)
... ..+..+| +|+.|.+.+..... .......+ ++|+.|.+.+|.....-...+.+|+.|+++.+
T Consensus 122 n~~----~~L~~LPssLk~L~I~~~n~~~--~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 122 SAT----DSIKNVPNGLTSLSINSYNPEN--QARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCC----cccccCcchHhheecccccccc--ccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 321 1223332 56666653322110 00000112 46777777776644322223456777776553
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.86 E-value=8.4e-06 Score=74.86 Aligned_cols=197 Identities=18% Similarity=0.161 Sum_probs=99.3
Q ss_pred cccCCccccCCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee-ecc
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-DLV 205 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-~i~ 205 (412)
..++|..+.+..+|++|+.+.+.+.. ++..+.+-.|..|+..++.+. ++..-+.+|.+|..|.+.+++...-. ...
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~i 180 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENHI 180 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHHH
Confidence 34556666666666666665554422 244445555555555555441 11111223444555555554322110 011
Q ss_pred CCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 206 ~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
++.+|++|+.... -+..++. ...+|+.|++..+..... -.|++|..|++++++.+.+.. ...+...+++++..|
T Consensus 181 ~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 181 AMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceee
Confidence 1345666554332 2223322 233455555555542222 267888888888887777654 133455678888888
Q ss_pred ecccccccccccc---cccccceEEEecCcccc-eeeccCCCeeeEEEecce
Q 015171 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDL 330 (412)
Q Consensus 283 ~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~ 330 (412)
++.+ ..++.++. ...+|++|++++..... ....+.-+|+++.+.|.+
T Consensus 258 DLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP 308 (565)
T KOG0472|consen 258 DLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP 308 (565)
T ss_pred eccc-cccccCchHHHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence 8887 34444443 33567888887764421 111111145666666643
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.79 E-value=0.00034 Score=47.63 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=23.2
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeecc
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 196 (412)
+|++|++++|.+... ..+..+++|++|+++++.+..-. ...+.++|+|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence 345555555433211 23344455555555444441100 112344455555555444
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.78 E-value=0.00048 Score=46.89 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred CcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 229 SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
|+|++|+++++.-..+. ..+..+++|++|+++++.+..- ....+.++++|+.|+++++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 34444554444311111 2344556666666665555431 1223455556666665553
No 48
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.72 E-value=0.0031 Score=59.72 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=15.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEece
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYC 149 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~ 149 (412)
.+++.|+++.+. ...+|. + -++|++|.+++|
T Consensus 52 ~~l~~L~Is~c~--L~sLP~-L--P~sLtsL~Lsnc 82 (426)
T PRK15386 52 RASGRLYIKDCD--IESLPV-L--PNELTEITIENC 82 (426)
T ss_pred cCCCEEEeCCCC--CcccCC-C--CCCCcEEEccCC
Confidence 466666666542 223331 1 124666666654
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.65 E-value=0.0015 Score=63.08 Aligned_cols=144 Identities=22% Similarity=0.283 Sum_probs=70.7
Q ss_pred CCCeeEEEEeceeecCCCC-CccC-cccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeecc-CCCCccEEE
Q 015171 138 VESLHVLELSYCKLQQPSE-NVKL-FSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLV-NLSNLKEII 214 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~~~-~~~l-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~-~l~~L~~L~ 214 (412)
.+.++.|.+.++.+...+. ...+ ++|+.|+++++.+.. +..-+..+|.|+.|.+++|....-.... ..+.|+.|.
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 3556666666655543322 3333 267777776665522 1122455677777777666443222221 345666666
Q ss_pred EeeCCCCceEEE--ecCc-ccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 215 LVNTSDIKRVEI--KTSN-VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 215 i~~c~~l~~~~~--~~p~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
+++. .+..++. ..++ |+++.++++........+..+.++..+.+.++.+.. +......+++++.|++++
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccc
Confidence 6654 3333322 1233 666666665322223334445555555554444433 122344455566666665
No 50
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.46 E-value=1.4e-05 Score=73.36 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=38.3
Q ss_pred CCCCccEEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 206 NLSNLKEIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 206 ~l~~L~~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
+++++..|++++. .+++++- -..+|++|+++++.....+..++++ .|+.|.+.|+.+..
T Consensus 250 ~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 250 HLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred ccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHH
Confidence 3567777777665 3333332 3456777888777755566677777 77778887777644
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.46 E-value=0.00028 Score=61.56 Aligned_cols=104 Identities=27% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEee
Q 015171 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 116 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~ 194 (412)
++++.+..+.....++....-.+..|+.|++.++.+.+...+-.+|+||+|.++.+.. ....+.-++..||+|.+|.++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls 99 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLS 99 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeec
Confidence 3444444433333334444445677888888888887777777889999999998855 334566667788999999999
Q ss_pred ccCCcc--ee-eccCCCCccEEEEeeCC
Q 015171 195 SCEGLE--SL-DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 195 ~c~~~~--~~-~i~~l~~L~~L~i~~c~ 219 (412)
++..-. .+ .+..+.+|..|.+.+|+
T Consensus 100 ~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 100 GNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCccccccccchhhhhcchhhhhcccCC
Confidence 885432 11 12235678888888773
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.45 E-value=0.0017 Score=62.69 Aligned_cols=166 Identities=22% Similarity=0.231 Sum_probs=111.6
Q ss_pred CceEEEEEeCCCccccCCccccCCC-CeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVE-SLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~-~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+..+.+.. ....++|......+ +|+.|+++++.+... .....+++|+.|+++++.+.+ +.......+.|+.|.
T Consensus 117 ~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ 192 (394)
T COG4886 117 NLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD 192 (394)
T ss_pred ceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence 566666665 34457777777774 999999999887655 467899999999999997733 333233678999999
Q ss_pred eeccCCcceeec-cCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHH
Q 015171 193 IRSCEGLESLDL-VNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 193 l~~c~~~~~~~i-~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (412)
++++..-.--.. .....|+.|.+.+......+. -..+++..+.+.++........++.+++++.|+++++.+...
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i-- 270 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI-- 270 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc--
Confidence 998855322111 122448888887653222221 144566666655554222235667788899999999888773
Q ss_pred HHhhcCCCCccEEecccc
Q 015171 270 CNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c 287 (412)
.. +....+++.|++++-
T Consensus 271 ~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 271 SS-LGSLTNLRELDLSGN 287 (394)
T ss_pred cc-ccccCccCEEeccCc
Confidence 22 567788999999873
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.00022 Score=62.64 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCccEEEEeeCCCCceEEE--ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 208 SNLKEIILVNTSDIKRVEI--KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 208 ~~L~~L~i~~c~~l~~~~~--~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
.+.++|+.++| ++..|.+ .+|.|+.|.++-+.... ...+..|++|++|.|..|.+.+-.-...+.++|+|++|-|.
T Consensus 19 ~~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSvNkIss-L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISICEKMPLLEVLSLSVNKISS-LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCC-CccHHHHHHhcccceeEEeecccccc-chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45666777766 4444443 57778888887665222 44567788899888888877764444456788888888887
Q ss_pred cccccccc--------cccccccceEE
Q 015171 286 KCHKLTSV--------RISSPCLKTLI 304 (412)
Q Consensus 286 ~c~~l~~l--------~~~~~~L~~L~ 304 (412)
..+....- ....|+|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 73332221 22567777774
No 54
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.08 E-value=0.0095 Score=32.51 Aligned_cols=25 Identities=44% Similarity=0.852 Sum_probs=22.4
Q ss_pred ccceeEeeeEEe-CHHHHHHHHcCCC
Q 015171 162 SLRKLALREVCA-DDQAIASLISGCP 186 (412)
Q Consensus 162 ~L~~L~L~~~~~-~~~~l~~l~~~~p 186 (412)
+||+|+|.++.+ +++.+..++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999999 6668999999998
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.03 E-value=0.0029 Score=55.62 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=27.3
Q ss_pred CCccCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccC
Q 015171 156 ENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 156 ~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....||.|++.+|+.+.+ ..+.+..+++....|+.|.+.+|.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 344566666666666666 234566667777777777777763
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.93 E-value=0.0035 Score=55.14 Aligned_cols=147 Identities=16% Similarity=0.093 Sum_probs=91.2
Q ss_pred HHHcCCCCccEEEeeccCCccee------eccCCCCccEEEEeeCCCCceE-----------------EEecCcccEEEe
Q 015171 180 SLISGCPLIEYLEIRSCEGLESL------DLVNLSNLKEIILVNTSDIKRV-----------------EIKTSNVNALAI 236 (412)
Q Consensus 180 ~l~~~~p~Le~L~l~~c~~~~~~------~i~~l~~L~~L~i~~c~~l~~~-----------------~~~~p~L~~L~l 236 (412)
..+..||.|+..+++++.+.... -|.+...|++|.+++| ++..+ ..+.|.|+++..
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 34568999999999998664322 1344478999999999 11111 125688999888
Q ss_pred eeeeccceE-----EeccCCCCCcEEEeeccccchHHHHHh----hcCCCCccEEeccccc--cc-----cccccccccc
Q 015171 237 HQTYLFPIE-----VNVSSCGNLKCLKFDFLPIEDEWLCNG----ISKLPLLEYLSMTKCH--KL-----TSVRISSPCL 300 (412)
Q Consensus 237 ~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L~l~~c~--~l-----~~l~~~~~~L 300 (412)
..+...... ..+.+-.+|+.+.+..+.+....+..+ +..+.+|+.|++.+.. .. ....-..+.|
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 777622111 123344689999998888876543322 3457889999998731 11 1111134567
Q ss_pred ceEEEecCcccc----e-----eeccCCCeeeEEEe
Q 015171 301 KTLILECCDKLI----Q-----VEIETPNLSIFKYH 327 (412)
Q Consensus 301 ~~L~l~~c~~l~----~-----~~~~~~~L~~l~~~ 327 (412)
+.|.+..|-... . -....|+|+.|+..
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~ 280 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGD 280 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccc
Confidence 888888885531 1 12356777777653
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.90 E-value=0.0038 Score=56.28 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=35.3
Q ss_pred CcccCCCCC----HHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 8 EVDGISTLP----EPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 8 ~~D~is~LP----devl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
..|.++.|| |++...||+||+..+++.+..|||+|+.+
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 368899999 99999999999999999999999999963
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.85 E-value=0.013 Score=36.67 Aligned_cols=34 Identities=35% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
++|++|+++++.+.+ ++..+.++++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467888888887776 4554677888888888875
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.68 E-value=0.0017 Score=56.79 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=5.9
Q ss_pred cCcccEEEeeeee
Q 015171 228 TSNVNALAIHQTY 240 (412)
Q Consensus 228 ~p~L~~L~l~~~~ 240 (412)
+|+|+++.++++.
T Consensus 90 ~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 90 APNLKVLNLSGNK 102 (260)
T ss_pred CCceeEEeecCCc
Confidence 3444444444443
No 60
>PLN03150 hypothetical protein; Provisional
Probab=95.56 E-value=0.012 Score=60.04 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=67.3
Q ss_pred CccEEEEeeCCCCceEE---EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEec
Q 015171 209 NLKEIILVNTSDIKRVE---IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSM 284 (412)
Q Consensus 209 ~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 284 (412)
.++.|++.++.--..++ ..+++|+.|+++++. ...++..++.+++|+.|++++|.+... ++..+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEEC
Confidence 36677777662111111 256789999998887 334455678899999999999888764 3444678899999999
Q ss_pred cccccccccccc----ccccceEEEecCccc
Q 015171 285 TKCHKLTSVRIS----SPCLKTLILECCDKL 311 (412)
Q Consensus 285 ~~c~~l~~l~~~----~~~L~~L~l~~c~~l 311 (412)
+++.....++.. ..++..+++.++..+
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccc
Confidence 986544444432 234556777665544
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.36 E-value=0.01 Score=37.24 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=28.4
Q ss_pred CcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 229 SNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
|+|++|+++++....++..++++++|+.|+++++.+.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 57888888888744444457899999999999998775
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.27 E-value=0.015 Score=48.97 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=32.6
Q ss_pred cCcccEEEeeeeecc--ceEEeccCCCCCcEEEeeccccchHHH--HHhhcCCCCccEEeccc
Q 015171 228 TSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTK 286 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 286 (412)
+|+|..|.+.++... .-...+..||.|++|.+-++.+....- ..++..+|+|+.|++..
T Consensus 87 ~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 87 LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 466666666665511 112234566777777776666554211 12345567777777765
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.24 E-value=0.0017 Score=59.91 Aligned_cols=57 Identities=25% Similarity=0.186 Sum_probs=39.5
Q ss_pred CceEEEEEeCCCccccCCcccc-CCCCeeEEEEeceeecCC--CCCccCcccceeEeee-EEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIF-YVESLHVLELSYCKLQQP--SENVKLFSLRKLALRE-VCA 173 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~-~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~-~~~ 173 (412)
...++.++. .....+|+..| ..++|+.|+|+++.+... ..+.++++|.+|.+.+ +.+
T Consensus 68 ~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 68 ETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred cceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 555666664 34457777654 589999999999876433 5567788888887776 555
No 64
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.17 E-value=0.0042 Score=52.26 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=48.1
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeec---cCCCCccEE
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDL---VNLSNLKEI 213 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i---~~l~~L~~L 213 (412)
.++.++-+++.+... .-..+++.++.|.+.+|.. +|..+..+-.-.|+|+.|+|++|+.+++..+ ..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 345555555433221 3355677777777777777 7777777666777788888887777654432 234666666
Q ss_pred EEee
Q 015171 214 ILVN 217 (412)
Q Consensus 214 ~i~~ 217 (412)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.09 E-value=0.053 Score=45.84 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=29.2
Q ss_pred CeeEEEEeceeecCCCCCccCcccceeEeeeEEeC--HHHHHHHHcCCCCccEEEeeccC
Q 015171 140 SLHVLELSYCKLQQPSENVKLFSLRKLALREVCAD--DQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~--~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....++|+++.+.....+..++.|.+|.+.+++++ +..+.. ..|+|..|.+.++.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhh---hccccceEEecCcc
Confidence 44555566555544444555666666666666652 222222 24566666666553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.0016 Score=57.40 Aligned_cols=96 Identities=23% Similarity=0.187 Sum_probs=67.1
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l 193 (412)
+++.|+.-+|.-.+.. ....++.|+.|.|+-+.+..-..+..|.+|+.|.|..+.+ +-+.+.. +.+.|+|+.|.|
T Consensus 20 ~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL 95 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWL 95 (388)
T ss_pred HhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhh
Confidence 4566655554433332 2345688899999988877667788899999999999888 4444443 678999999999
Q ss_pred eccCCcce-------eeccCCCCccEEE
Q 015171 194 RSCEGLES-------LDLVNLSNLKEII 214 (412)
Q Consensus 194 ~~c~~~~~-------~~i~~l~~L~~L~ 214 (412)
..++..+. ..+..+|+|++|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 87654321 2344578888886
No 67
>PLN03150 hypothetical protein; Provisional
Probab=94.77 E-value=0.028 Score=57.48 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=58.5
Q ss_pred ccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEe
Q 015171 231 VNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILE 306 (412)
Q Consensus 231 L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~ 306 (412)
++.|+++++. ....+..+..+++|+.|+|+++.+... ++..+..+++|+.|+++++.....++. .+++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5667776665 334455677889999999998887653 344467789999999998654444443 56789999998
Q ss_pred cCccccee
Q 015171 307 CCDKLIQV 314 (412)
Q Consensus 307 ~c~~l~~~ 314 (412)
++.....+
T Consensus 499 ~N~l~g~i 506 (623)
T PLN03150 499 GNSLSGRV 506 (623)
T ss_pred CCcccccC
Confidence 87654333
No 68
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.42 E-value=0.026 Score=50.66 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=31.6
Q ss_pred cccCCCCCHHHHHHHHcc-----CChHHHHHHhhhhhchhhh
Q 015171 9 VDGISTLPEPILHHILSF-----LPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 9 ~D~is~LPdevl~~Ils~-----L~~~~~~~~~~vskrWr~l 45 (412)
-+.|+.||||||..||.. ++.+++.++++|||.|+..
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~ 145 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC 145 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence 355789999999999974 5679999999999999853
No 69
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.016 Score=48.95 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=41.5
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccC----CCCccEEEEeeCCCCc
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVN----LSNLKEIILVNTSDIK 222 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~----l~~L~~L~i~~c~~l~ 222 (412)
.++.++-+++.+..+++.. +.+++.++.|.+.+|..++++.+.. .++|+.|+|++|..++
T Consensus 102 ~IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT 165 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT 165 (221)
T ss_pred eEEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence 3466666677666777777 5789999999999999887765432 2556666666554443
No 70
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.27 E-value=0.068 Score=50.20 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHccCC-hHHHHHHhhhhhchhhhccc
Q 015171 12 ISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 12 is~LPdevl~~Ils~L~-~~~~~~~~~vskrWr~lw~~ 48 (412)
.++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999996 57999999999999986443
No 71
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=90.51 E-value=0.0049 Score=59.67 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=21.0
Q ss_pred ccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 231 VNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 231 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
|.+|+++.+....+++.|..+..|++|-|.+|.+..
T Consensus 213 Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeeecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence 555666555544455556666666666666665544
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=90.20 E-value=0.0058 Score=60.95 Aligned_cols=119 Identities=18% Similarity=0.142 Sum_probs=54.5
Q ss_pred eeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCC--cceeeccCCCCccEEEEee
Q 015171 141 LHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEG--LESLDLVNLSNLKEIILVN 217 (412)
Q Consensus 141 L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~--~~~~~i~~l~~L~~L~i~~ 217 (412)
|...+.+.+.+... ....-++.|+.|+|+++.+.+-. .+..||.|+.|+|+.+.- +..+...+| .|..|.+++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence 33444444433222 33444566777777776663222 244567777777766532 222333332 366666655
Q ss_pred CCCCceEE-E-ecCcccEEEeeeee--ccceEEeccCCCCCcEEEeecccc
Q 015171 218 TSDIKRVE-I-KTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 218 c~~l~~~~-~-~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
+ .++.+. + +..+|..|+++.+. ...-...+..+..|+.|.|.||.+
T Consensus 242 N-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 N-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred c-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4 111111 1 34455555555444 111111223345555566655544
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=90.01 E-value=0.034 Score=53.97 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=60.1
Q ss_pred ccCCCCeeEEEEeceeecCCCC-CccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccE
Q 015171 135 IFYVESLHVLELSYCKLQQPSE-NVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKE 212 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~-~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~ 212 (412)
+..+++|+.|++.++.+..... ...+++|+.|+++++.+ +-..+. .++.|+.|.+.+|.....-.+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhhc
Confidence 5556788888888877765544 66788888888888877 333333 34558888888775543333333456666
Q ss_pred EEEeeC--CCCceE-EEecCcccEEEeeeee
Q 015171 213 IILVNT--SDIKRV-EIKTSNVNALAIHQTY 240 (412)
Q Consensus 213 L~i~~c--~~l~~~-~~~~p~L~~L~l~~~~ 240 (412)
+++.++ ..+... ....++++.+.+.++.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 666655 111110 1234455555555544
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=88.81 E-value=0.2 Score=49.96 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=36.8
Q ss_pred cCCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 6 ~~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
....|.++.||.|+..+||++|+.++++.+++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3457899999999999999999999999999999999864
No 75
>PF13013 F-box-like_2: F-box-like domain
Probab=87.89 E-value=0.47 Score=36.18 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=26.7
Q ss_pred cCCCCCHHHHHHHHccCChHHHHHHhhhhh
Q 015171 11 GISTLPEPILHHILSFLPFKEVAQTCLLSK 40 (412)
Q Consensus 11 ~is~LPdevl~~Ils~L~~~~~~~~~~vsk 40 (412)
.+.+||+|++..||.+-...+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 377899999999999999999988887776
No 76
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=87.06 E-value=0.41 Score=25.93 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=10.4
Q ss_pred cccceeEeeeEEe-CHHHHHHH
Q 015171 161 FSLRKLALREVCA-DDQAIASL 181 (412)
Q Consensus 161 ~~L~~L~L~~~~~-~~~~l~~l 181 (412)
++|+.|+|++|.. +|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555543 55554443
No 77
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=87.02 E-value=0.036 Score=54.00 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=79.5
Q ss_pred ccCCccccCCCCeeEEEEeceeec-CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc-eeeccC
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQ-QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE-SLDLVN 206 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~-~~~i~~ 206 (412)
-++|..+..|..|+.+.|..+.+. .+....++..|+.|+|+.+.+. .+..-+-.|| |+.|.++++.... ...+..
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEEecCccccCCccccc
Confidence 345555555566666666654433 2244556667777777766551 1111122344 6666666654321 112333
Q ss_pred CCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEe
Q 015171 207 LSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLS 283 (412)
Q Consensus 207 l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 283 (412)
.++|..|+.+.| .+..+. ....+|+.|.+..+....++..+. .-.|..|++++|++.. ++--+..+..|+.|.
T Consensus 165 ~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 165 LPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISY--LPVDFRKMRHLQVLQ 240 (722)
T ss_pred chhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceee--cchhhhhhhhheeee
Confidence 467777777665 222221 233455555555554222233333 2346667777777765 344456667777777
Q ss_pred cccc
Q 015171 284 MTKC 287 (412)
Q Consensus 284 l~~c 287 (412)
|.+.
T Consensus 241 LenN 244 (722)
T KOG0532|consen 241 LENN 244 (722)
T ss_pred eccC
Confidence 7763
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=85.37 E-value=0.34 Score=47.04 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=58.0
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEe
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l 193 (412)
++..+++... ...++...+..+++|++|+++++.+........++.|+.|++.++.+ +-..+ ..++.|+.+++
T Consensus 96 ~l~~l~l~~n--~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~----~~l~~L~~l~l 169 (414)
T KOG0531|consen 96 SLEALDLYDN--KIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGL----ESLKSLKLLDL 169 (414)
T ss_pred ceeeeecccc--chhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCC----ccchhhhcccC
Confidence 4555554442 22233333555778888888887776666666777788888888776 22222 23667777777
Q ss_pred eccCCcceee--ccCCCCccEEEEeeC
Q 015171 194 RSCEGLESLD--LVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~~--i~~l~~L~~L~i~~c 218 (412)
+++.....-. ...+.+++.+.+.+.
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCC
Confidence 7765433222 244566776666654
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.12 E-value=0.87 Score=23.98 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=13.2
Q ss_pred CCCCcEEEeeccccchHHHHH
Q 015171 251 CGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~ 271 (412)
+++|++|+|+++.+.++....
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHH
Confidence 467888888888877766544
No 80
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=83.08 E-value=0.92 Score=21.78 Aligned_cols=8 Identities=25% Similarity=0.505 Sum_probs=2.7
Q ss_pred ccEEeccc
Q 015171 279 LEYLSMTK 286 (412)
Q Consensus 279 L~~L~l~~ 286 (412)
|+.|++++
T Consensus 3 L~~L~l~~ 10 (17)
T PF13504_consen 3 LRTLDLSN 10 (17)
T ss_dssp -SEEEETS
T ss_pred cCEEECCC
Confidence 33333333
No 81
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=78.99 E-value=1.8 Score=22.29 Aligned_cols=9 Identities=33% Similarity=0.147 Sum_probs=4.3
Q ss_pred cceEEEecC
Q 015171 300 LKTLILECC 308 (412)
Q Consensus 300 L~~L~l~~c 308 (412)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444444444
No 82
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=77.39 E-value=1.3 Score=28.57 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=20.4
Q ss_pred CeeeEEEeccee---------eecccccccceEEEE
Q 015171 320 NLSIFKYHGDLI---------SFSSNALSLSETSLC 346 (412)
Q Consensus 320 ~L~~l~~~~~~~---------~~l~~~~~L~~l~i~ 346 (412)
+|+.+.+.|+.+ +++.|++.|+++.|.
T Consensus 15 ~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 15 HLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred eeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 577777777666 788888888888773
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.31 E-value=2.6 Score=32.91 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=3.8
Q ss_pred CCCCccEEEee
Q 015171 184 GCPLIEYLEIR 194 (412)
Q Consensus 184 ~~p~Le~L~l~ 194 (412)
+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 44455555443
No 84
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=75.52 E-value=1.4 Score=38.92 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=39.1
Q ss_pred cccCCcccCCCCCHHHHHHHHccCC-hHHHHHHhhhhhch------hhhcccCCeeeee
Q 015171 4 IGVLEVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRW------KQVWQTFPDVEVG 55 (412)
Q Consensus 4 ~~~~~~D~is~LPdevl~~Ils~L~-~~~~~~~~~vskrW------r~lw~~~~~l~~~ 55 (412)
.+++.+-.+.+||.|++..|+.+++ -+|++.++.|-..- +.+|+.+...+|.
T Consensus 194 ~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~ 252 (332)
T KOG3926|consen 194 EPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFN 252 (332)
T ss_pred CCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456789999999999999998 58888888773222 3578887777775
No 85
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=70.09 E-value=0.95 Score=35.50 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred CCCCeeEEEEece-eecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 137 YVESLHVLELSYC-KLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 137 ~~~~L~~L~L~~~-~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
.|++|+.+.+... ..-....+..+++|+.+.+... +..- -...+.+|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEET
T ss_pred CCCCCCEEEECCCeeEeChhhccccccccccccccc-cccc-ceeeeeccccccccccc
Confidence 4556666666532 1111133445555666655442 1000 01123455556666664
No 86
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=70.03 E-value=6.9 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=25.4
Q ss_pred CeeeEEEeccee---------eecccccccceEEEEEec
Q 015171 320 NLSIFKYHGDLI---------SFSSNALSLSETSLCFSS 349 (412)
Q Consensus 320 ~L~~l~~~~~~~---------~~l~~~~~L~~l~i~~~~ 349 (412)
+|+.+.+.++.+ +++.|++.|+++.|....
T Consensus 6 ~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~ 44 (72)
T smart00579 6 SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVET 44 (72)
T ss_pred eEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeec
Confidence 578888888876 789999999999998764
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.58 E-value=3 Score=23.01 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=16.3
Q ss_pred cccceeEeeeEEeCHHHHHHHH
Q 015171 161 FSLRKLALREVCADDQAIASLI 182 (412)
Q Consensus 161 ~~L~~L~L~~~~~~~~~l~~l~ 182 (412)
++|++|+|+++.+++++...+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5688888888888777766553
No 88
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=63.87 E-value=1.2 Score=35.64 Aligned_cols=60 Identities=17% Similarity=0.095 Sum_probs=31.4
Q ss_pred CCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCc
Q 015171 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGL 199 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~ 199 (412)
...|+..+|+++.+... .....+|.+++|++.++.+.+--.. +...|.|+.|.++.++..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 34455556666555433 2233455666666666655322211 455666666666665543
No 89
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=61.11 E-value=6.9 Score=29.14 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.5
Q ss_pred ccCCCCCHHHHHHHHccCChHHHHH
Q 015171 10 DGISTLPEPILHHILSFLPFKEVAQ 34 (412)
Q Consensus 10 D~is~LPdevl~~Ils~L~~~~~~~ 34 (412)
..++.||.|+-.+|+++|+-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6788999999999999999998754
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.14 E-value=4.2 Score=40.02 Aligned_cols=61 Identities=18% Similarity=0.084 Sum_probs=34.3
Q ss_pred CCCeeEEEEeceeecCC----CCCccCcccceeEeeeE--Ee-CHHHHHHHHcCCCCccEEEeeccCCcc
Q 015171 138 VESLHVLELSYCKLQQP----SENVKLFSLRKLALREV--CA-DDQAIASLISGCPLIEYLEIRSCEGLE 200 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~--~~-~~~~l~~l~~~~p~Le~L~l~~c~~~~ 200 (412)
.+.+..++|+++++..- ......|+|++|+|+++ .. ++..+..+ ..+.||+|.+.+++-.+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCcccc
Confidence 45566666766654322 33445677777777776 32 33344432 23457777777765543
No 91
>PF13018 ESPR: Extended Signal Peptide of Type V secretion system
Probab=57.95 E-value=7.3 Score=20.70 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=9.7
Q ss_pred ccceeEeeecccC
Q 015171 400 NVPFYRVIYHHAL 412 (412)
Q Consensus 400 ~~~~~~~~~~~~~ 412 (412)
|+ .||+||+++.
T Consensus 2 Nk-iyr~iwn~~~ 13 (24)
T PF13018_consen 2 NK-IYRLIWNKAR 13 (24)
T ss_pred Cc-cEEEEEECCC
Confidence 66 8999998763
No 92
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=55.30 E-value=21 Score=30.87 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=34.4
Q ss_pred CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 157 NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 157 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
..+|.+|+.-++++..+....+...-.-|.++|--.+.+|...+...+. .+|+--++.+|
T Consensus 167 NL~ca~lerADl~gsil~cA~L~~v~~lcaN~eGA~L~gcNfedps~~k--aNLeganLkG~ 226 (302)
T KOG1665|consen 167 NLQCAKLERADLEGSILHCAILREVEMLCANAEGASLKGCNFEDPSGLK--ANLEGANLKGA 226 (302)
T ss_pred chhhhhhcccccccchhhhhhhhhhhheecccccccccCcCCCCccchh--ccccccccccc
Confidence 3456677777777766655555555556677777777777554332222 34555555444
No 93
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=45.13 E-value=1.5 Score=34.96 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=22.8
Q ss_pred EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 226 IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 226 ~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
+.+|..+.|.+..+....++..+..+|.|+.|+++++.+..
T Consensus 74 ~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 74 IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence 34445555555555433334446666667777776666554
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.82 E-value=5.6 Score=39.15 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=47.1
Q ss_pred CCccCcccceeEeeeEEe-CHHHHHHHHcCCCCccEEEeeccCCc--ceeeccC--CCCccEEEEeeC
Q 015171 156 ENVKLFSLRKLALREVCA-DDQAIASLISGCPLIEYLEIRSCEGL--ESLDLVN--LSNLKEIILVNT 218 (412)
Q Consensus 156 ~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~~p~Le~L~l~~c~~~--~~~~i~~--l~~L~~L~i~~c 218 (412)
...++|.+..++|+++.+ .-+.+..+.+..|.|..|+|+++... ....+.. ..-|++|-+.+.
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GN 280 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGN 280 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCC
Confidence 345788999999999999 77888889999999999999998332 2222221 356777877775
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=35.96 E-value=0.71 Score=45.47 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=38.1
Q ss_pred ccCCCCeeEEEEeceeecCC------CCCcc-CcccceeEeeeEEeCHHH---HHHHHcCCCCccEEEeeccCCc
Q 015171 135 IFYVESLHVLELSYCKLQQP------SENVK-LFSLRKLALREVCADDQA---IASLISGCPLIEYLEIRSCEGL 199 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~------~~~~~-l~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l~~c~~~ 199 (412)
+....+|+.|+++++.+... ..... -..|++|.+..|..+.++ +...+..++.+++++++.|...
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 34456777788877766533 11112 145666777777764433 3333445777777777777653
No 96
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=33.92 E-value=29 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=7.1
Q ss_pred CCCcEEEeeccccc
Q 015171 252 GNLKCLKFDFLPIE 265 (412)
Q Consensus 252 ~~L~~L~l~~~~~~ 265 (412)
++|+.|+++++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 97
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=33.92 E-value=29 Score=18.26 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=7.1
Q ss_pred CCCcEEEeeccccc
Q 015171 252 GNLKCLKFDFLPIE 265 (412)
Q Consensus 252 ~~L~~L~l~~~~~~ 265 (412)
++|+.|+++++.+.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34555555555443
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=26.79 E-value=49 Score=17.92 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=7.4
Q ss_pred CCCcEEEeecccc
Q 015171 252 GNLKCLKFDFLPI 264 (412)
Q Consensus 252 ~~L~~L~l~~~~~ 264 (412)
.+|+.|+++.+.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4556666655554
No 99
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=26.14 E-value=16 Score=33.66 Aligned_cols=40 Identities=30% Similarity=0.546 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCe
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPD 51 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~ 51 (412)
+..+|++++..|++++..++++++|.|++|-..+-+..|.
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~l 47 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPL 47 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhcccc
Confidence 4568999999999999999999999999999876444433
Done!