Query 015171
Match_columns 412
No_of_seqs 291 out of 2901
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015171.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015171hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 5.1E-24 1.7E-28 214.8 8.4 38 8-45 2-40 (594)
2 3ogk_B Coronatine-insensitive 99.9 2.6E-23 8.9E-28 209.6 11.6 328 7-347 4-445 (592)
3 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.4E-28 195.6 8.5 235 8-287 5-257 (336)
4 4fcg_A Uncharacterized protein 99.7 1.6E-16 5.4E-21 147.9 10.2 203 107-315 74-294 (328)
5 4fcg_A Uncharacterized protein 99.6 8E-15 2.7E-19 136.3 10.4 204 138-346 80-309 (328)
6 4fmz_A Internalin; leucine ric 99.5 1.3E-14 4.5E-19 135.9 9.8 223 114-348 66-297 (347)
7 4fmz_A Internalin; leucine ric 99.5 9.1E-14 3.1E-18 130.2 10.4 226 113-348 43-275 (347)
8 3rgz_A Protein brassinosteroid 99.5 3.1E-14 1.1E-18 147.5 6.7 230 115-348 101-353 (768)
9 2p1m_B Transport inhibitor res 99.5 7E-14 2.4E-18 140.6 8.1 109 83-197 105-222 (594)
10 3ogk_B Coronatine-insensitive 99.4 1E-14 3.5E-19 146.6 0.7 121 249-372 375-519 (592)
11 3t6q_A CD180 antigen; protein- 99.4 2.7E-14 9.1E-19 144.1 3.3 216 130-348 292-533 (606)
12 2ast_B S-phase kinase-associat 99.4 4.1E-14 1.4E-18 131.9 3.9 221 105-329 37-282 (336)
13 1ogq_A PGIP-2, polygalacturona 99.4 8.4E-14 2.9E-18 128.6 5.8 230 115-347 51-300 (313)
14 3v47_A TOLL-like receptor 5B a 99.4 3.5E-13 1.2E-17 130.9 9.5 117 230-348 276-405 (455)
15 3rgz_A Protein brassinosteroid 99.4 2.4E-13 8.1E-18 140.9 8.5 173 136-309 197-379 (768)
16 1o6v_A Internalin A; bacterial 99.4 8.2E-13 2.8E-17 128.9 11.4 57 114-173 90-146 (466)
17 3vq2_A TLR4, TOLL-like recepto 99.4 4.1E-13 1.4E-17 135.4 9.5 208 135-348 281-531 (606)
18 2z66_A Variable lymphocyte rec 99.4 1.7E-13 5.7E-18 126.1 6.0 235 129-365 20-276 (306)
19 1o6v_A Internalin A; bacterial 99.4 8.9E-13 3.1E-17 128.6 11.4 98 114-218 134-231 (466)
20 2z80_A TOLL-like receptor 2, v 99.4 9.8E-13 3.3E-17 123.5 11.2 246 114-364 52-329 (353)
21 3vq2_A TLR4, TOLL-like recepto 99.4 2.4E-13 8.1E-18 137.2 5.5 216 137-352 326-559 (606)
22 2id5_A Lingo-1, leucine rich r 99.4 6.3E-13 2.2E-17 130.0 8.1 230 114-348 56-306 (477)
23 3bz5_A Internalin-J, INLJ; leu 99.4 2.2E-12 7.4E-17 125.3 11.6 218 114-348 64-296 (457)
24 3o6n_A APL1; leucine-rich repe 99.4 1.9E-12 6.6E-17 123.2 10.7 98 248-348 244-349 (390)
25 3t6q_A CD180 antigen; protein- 99.4 1.3E-12 4.5E-17 131.7 9.9 230 115-348 255-510 (606)
26 2z63_A TOLL-like receptor 4, v 99.4 1.1E-12 3.9E-17 131.1 9.2 226 114-348 282-528 (570)
27 2z63_A TOLL-like receptor 4, v 99.3 1.9E-12 6.4E-17 129.5 9.9 213 130-348 273-504 (570)
28 3bz5_A Internalin-J, INLJ; leu 99.3 3.2E-12 1.1E-16 124.1 11.0 239 83-348 64-328 (457)
29 3o6n_A APL1; leucine-rich repe 99.3 4.2E-12 1.4E-16 120.9 11.6 224 114-348 93-328 (390)
30 3g06_A SSPH2 (leucine-rich rep 99.3 6.8E-12 2.3E-16 125.9 13.5 210 114-348 61-294 (622)
31 1xku_A Decorin; proteoglycan, 99.3 3E-12 1E-16 119.0 9.5 191 114-310 76-275 (330)
32 3zyj_A Leucine-rich repeat-con 99.3 2.3E-12 8E-17 124.7 9.0 169 115-287 65-241 (440)
33 2id5_A Lingo-1, leucine rich r 99.3 1.8E-12 6.3E-17 126.7 8.3 229 114-348 80-330 (477)
34 3o53_A Protein LRIM1, AGAP0063 99.3 7.7E-13 2.6E-17 122.3 5.2 194 102-308 20-224 (317)
35 1ogq_A PGIP-2, polygalacturona 99.3 1E-12 3.6E-17 121.2 5.7 212 113-328 75-300 (313)
36 3oja_A Leucine-rich immune mol 99.3 9.2E-13 3.2E-17 129.1 5.4 96 115-218 35-130 (487)
37 3zyi_A Leucine-rich repeat-con 99.3 3E-12 1E-16 124.4 8.9 192 114-309 75-277 (452)
38 3zyi_A Leucine-rich repeat-con 99.3 3.2E-12 1.1E-16 124.2 9.0 230 127-363 65-316 (452)
39 1h6u_A Internalin H; cell adhe 99.3 3.7E-12 1.3E-16 117.2 8.9 187 113-310 40-229 (308)
40 3v47_A TOLL-like receptor 5B a 99.3 1.8E-12 6.2E-17 125.9 7.2 233 114-348 54-381 (455)
41 4eco_A Uncharacterized protein 99.3 2.2E-12 7.5E-17 130.7 8.0 151 114-265 206-390 (636)
42 3oja_B Anopheles plasmodium-re 99.3 7.4E-12 2.5E-16 125.9 11.1 209 136-349 120-356 (597)
43 2z7x_B TOLL-like receptor 1, v 99.3 6.3E-12 2.2E-16 124.3 10.4 122 227-348 322-454 (520)
44 1h6u_A Internalin H; cell adhe 99.3 4.2E-12 1.4E-16 116.9 8.4 185 137-330 39-228 (308)
45 1z7x_W Ribonuclease inhibitor; 99.3 2.3E-13 7.9E-18 132.5 -0.4 257 115-372 86-404 (461)
46 3zyj_A Leucine-rich repeat-con 99.3 3.6E-12 1.2E-16 123.3 7.8 228 128-363 55-305 (440)
47 1z7x_W Ribonuclease inhibitor; 99.3 6E-13 2.1E-17 129.5 1.9 207 140-348 86-351 (461)
48 3oja_B Anopheles plasmodium-re 99.3 1.2E-11 4E-16 124.5 10.6 208 114-331 123-357 (597)
49 4ecn_A Leucine-rich repeat pro 99.2 6.3E-12 2.2E-16 130.4 7.5 151 114-265 448-632 (876)
50 2z66_A Variable lymphocyte rec 99.2 1.5E-12 5.1E-17 119.7 1.8 210 114-330 28-259 (306)
51 1ozn_A Reticulon 4 receptor; N 99.2 8.2E-12 2.8E-16 113.5 6.3 169 138-309 31-212 (285)
52 2z7x_B TOLL-like receptor 1, v 99.2 1.8E-10 6.2E-15 113.8 16.0 199 158-358 273-489 (520)
53 3j0a_A TOLL-like receptor 5; m 99.2 2.3E-11 7.8E-16 127.3 9.9 96 252-348 266-372 (844)
54 2z81_A CD282 antigen, TOLL-lik 99.2 3.1E-11 1.1E-15 120.1 10.0 83 114-198 74-160 (549)
55 3oja_A Leucine-rich immune mol 99.2 1.1E-11 3.8E-16 121.3 6.4 204 138-349 33-248 (487)
56 3j0a_A TOLL-like receptor 5; m 99.2 6.8E-11 2.3E-15 123.7 12.7 233 114-348 73-391 (844)
57 2ca6_A RAN GTPase-activating p 99.2 1.7E-12 5.9E-17 123.4 0.4 216 114-329 32-313 (386)
58 3o53_A Protein LRIM1, AGAP0063 99.2 1.4E-11 4.7E-16 113.9 6.4 206 137-350 32-249 (317)
59 2z81_A CD282 antigen, TOLL-lik 99.2 1.2E-10 4.1E-15 115.8 13.7 193 114-309 26-234 (549)
60 1jl5_A Outer protein YOPM; leu 99.2 1.3E-10 4.4E-15 112.7 13.3 120 139-265 131-250 (454)
61 4ecn_A Leucine-rich repeat pro 99.2 7.3E-12 2.5E-16 130.0 4.7 174 131-310 440-656 (876)
62 1h6t_A Internalin B; cell adhe 99.2 1.7E-11 5.8E-16 111.8 6.5 163 114-287 46-210 (291)
63 1ozn_A Reticulon 4 receptor; N 99.2 8.8E-12 3E-16 113.3 4.4 191 114-310 32-237 (285)
64 4eco_A Uncharacterized protein 99.2 2.2E-12 7.5E-17 130.7 0.0 175 130-310 197-414 (636)
65 1xku_A Decorin; proteoglycan, 99.2 3.9E-11 1.3E-15 111.5 8.4 208 114-331 52-275 (330)
66 2ft3_A Biglycan; proteoglycan, 99.2 1.2E-11 4.1E-16 115.0 4.5 226 114-346 78-328 (332)
67 2xwt_C Thyrotropin receptor; s 99.2 4.8E-11 1.6E-15 105.5 8.0 166 140-309 32-216 (239)
68 2xwt_C Thyrotropin receptor; s 99.2 3.4E-11 1.2E-15 106.4 6.9 192 114-310 31-238 (239)
69 4glp_A Monocyte differentiatio 99.2 1.5E-11 5.1E-16 113.3 4.7 116 101-218 78-207 (310)
70 1wwl_A Monocyte differentiatio 99.2 2.5E-12 8.6E-17 118.6 -0.6 194 137-347 93-305 (312)
71 3rfs_A Internalin B, repeat mo 99.2 5E-12 1.7E-16 114.1 1.3 169 113-287 40-215 (272)
72 2z80_A TOLL-like receptor 2, v 99.2 3.1E-11 1E-15 113.3 6.6 151 114-266 76-236 (353)
73 1m9s_A Internalin B; cell inva 99.1 2.5E-11 8.6E-16 121.5 5.3 165 113-288 42-208 (605)
74 4ezg_A Putative uncharacterize 99.1 3.3E-11 1.1E-15 103.2 5.2 145 114-286 44-190 (197)
75 1ziw_A TOLL-like receptor 3; i 99.1 5.5E-11 1.9E-15 121.5 7.8 52 297-348 479-546 (680)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 9.2E-10 3.1E-14 109.8 16.3 83 227-309 351-439 (562)
77 1wwl_A Monocyte differentiatio 99.1 8E-12 2.7E-16 115.2 1.2 206 139-348 43-284 (312)
78 3goz_A Leucine-rich repeat-con 99.1 3.7E-11 1.3E-15 113.1 5.5 37 161-197 80-120 (362)
79 3rfs_A Internalin B, repeat mo 99.1 4.3E-11 1.5E-15 108.0 5.3 169 136-309 38-216 (272)
80 2o6q_A Variable lymphocyte rec 99.1 8.9E-11 3E-15 105.8 7.4 86 130-218 30-119 (270)
81 2ca6_A RAN GTPase-activating p 99.1 1.7E-11 5.7E-16 116.5 1.6 197 114-311 60-316 (386)
82 1ziw_A TOLL-like receptor 3; i 99.1 1.8E-10 6.1E-15 117.7 8.9 229 114-347 25-305 (680)
83 1h6t_A Internalin B; cell adhe 99.1 1.2E-10 4.3E-15 106.0 6.6 166 136-310 43-212 (291)
84 2z62_A TOLL-like receptor 4, v 99.1 1.1E-10 3.8E-15 105.4 5.5 177 128-309 19-211 (276)
85 4glp_A Monocyte differentiatio 99.1 2.5E-11 8.7E-16 111.7 1.1 194 114-309 64-283 (310)
86 3g06_A SSPH2 (leucine-rich rep 99.0 1.3E-09 4.3E-14 109.4 12.9 196 113-331 80-296 (622)
87 4ezg_A Putative uncharacterize 99.0 1.2E-10 4.1E-15 99.7 4.8 146 136-309 41-192 (197)
88 1jl5_A Outer protein YOPM; leu 99.0 1E-09 3.5E-14 106.4 11.8 76 114-197 131-206 (454)
89 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 2.6E-09 8.9E-14 106.6 15.1 165 185-350 330-509 (562)
90 2z62_A TOLL-like receptor 4, v 99.0 5.3E-11 1.8E-15 107.6 2.3 189 114-309 28-235 (276)
91 1m9s_A Internalin B; cell inva 99.0 1.3E-10 4.5E-15 116.3 5.0 145 114-266 65-211 (605)
92 1p9a_G Platelet glycoprotein I 99.0 3.4E-10 1.2E-14 103.0 6.5 169 136-309 7-183 (290)
93 2ft3_A Biglycan; proteoglycan, 99.0 1.6E-10 5.3E-15 107.4 3.9 225 114-348 54-304 (332)
94 2o6q_A Variable lymphocyte rec 99.0 3.3E-10 1.1E-14 102.0 5.4 102 114-218 37-143 (270)
95 4ay9_X Follicle-stimulating ho 98.9 1.3E-09 4.4E-14 102.0 8.2 196 114-314 30-239 (350)
96 1fs1_A SKP2 F-BOX, cyclin A/CD 98.9 8.9E-10 3.1E-14 72.2 3.6 39 8-46 5-43 (53)
97 1p9a_G Platelet glycoprotein I 98.9 7.7E-10 2.6E-14 100.7 4.4 186 115-310 11-207 (290)
98 3goz_A Leucine-rich repeat-con 98.9 3.2E-10 1.1E-14 106.6 1.5 212 136-348 19-294 (362)
99 1xeu_A Internalin C; cellular 98.9 9E-10 3.1E-14 98.7 4.1 142 136-286 38-181 (263)
100 3m19_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 96.2 5.2 98 116-218 16-117 (251)
101 3cvr_A Invasion plasmid antige 98.9 3.4E-09 1.2E-13 105.1 7.7 176 113-311 58-243 (571)
102 1xeu_A Internalin C; cellular 98.8 7E-10 2.4E-14 99.4 1.3 162 139-310 19-184 (263)
103 2ell_A Acidic leucine-rich nuc 98.8 1.1E-09 3.8E-14 91.0 1.9 128 139-288 24-158 (168)
104 4ay9_X Follicle-stimulating ho 98.8 1.1E-08 3.8E-13 95.6 8.3 215 127-347 20-255 (350)
105 3m19_A Variable lymphocyte rec 98.7 3.9E-09 1.3E-13 93.8 3.9 144 139-286 14-164 (251)
106 2je0_A Acidic leucine-rich nuc 98.7 6.8E-10 2.3E-14 90.3 -1.2 55 139-196 17-74 (149)
107 4g8a_A TOLL-like receptor 4; l 98.7 1.5E-08 5.2E-13 102.2 6.9 135 228-363 444-593 (635)
108 2ell_A Acidic leucine-rich nuc 98.7 6E-09 2E-13 86.5 3.1 104 114-218 24-130 (168)
109 2o6s_A Variable lymphocyte rec 98.7 1E-08 3.4E-13 88.3 4.0 87 129-218 20-110 (208)
110 3e4g_A ATP synthase subunit S, 98.7 2.8E-08 9.5E-13 82.1 6.3 96 128-223 50-154 (176)
111 2je0_A Acidic leucine-rich nuc 98.6 5.7E-09 1.9E-13 84.8 0.9 104 114-218 17-123 (149)
112 1ds9_A Outer arm dynein; leuci 98.6 5.9E-09 2E-13 89.1 -0.6 146 115-283 24-180 (198)
113 3cvr_A Invasion plasmid antige 98.6 4.9E-08 1.7E-12 96.8 5.7 159 114-294 80-247 (571)
114 2o6s_A Variable lymphocyte rec 98.5 1.3E-08 4.3E-13 87.7 0.6 159 143-309 11-176 (208)
115 1a9n_A U2A', U2A'; complex (nu 98.5 2.3E-08 7.8E-13 83.7 1.9 126 136-287 16-150 (176)
116 2ra8_A Uncharacterized protein 98.5 6E-08 2E-12 90.7 4.8 131 177-309 163-318 (362)
117 3e6j_A Variable lymphocyte rec 98.5 7.8E-08 2.7E-12 84.1 4.4 135 127-286 30-168 (229)
118 4g8a_A TOLL-like receptor 4; l 98.5 5.3E-08 1.8E-12 98.2 3.1 210 114-331 349-579 (635)
119 2ra8_A Uncharacterized protein 98.5 3.5E-07 1.2E-11 85.4 8.5 185 83-288 107-318 (362)
120 1a9n_A U2A', U2A'; complex (nu 98.4 3.5E-08 1.2E-12 82.5 0.5 129 114-266 19-154 (176)
121 2v70_A SLIT-2, SLIT homolog 2 98.4 6.7E-08 2.3E-12 84.0 2.1 87 129-218 24-115 (220)
122 2v9t_B SLIT homolog 2 protein 98.4 1.3E-07 4.5E-12 82.1 3.7 89 127-218 22-114 (220)
123 3e6j_A Variable lymphocyte rec 98.4 1.4E-07 4.7E-12 82.5 3.1 142 142-310 22-171 (229)
124 2xot_A Amphoterin-induced prot 98.4 2.4E-07 8.3E-12 86.8 4.8 145 139-286 39-198 (361)
125 3un9_A NLR family member X1; l 98.3 1.2E-08 4.1E-13 96.1 -4.5 87 111-197 69-166 (372)
126 2v70_A SLIT-2, SLIT homolog 2 98.3 1.9E-07 6.5E-12 81.1 3.1 123 162-286 33-162 (220)
127 1ds9_A Outer arm dynein; leuci 98.3 2.9E-08 1E-12 84.7 -2.2 60 228-288 92-151 (198)
128 3e4g_A ATP synthase subunit S, 98.3 5.7E-07 1.9E-11 74.3 5.1 83 230-312 62-153 (176)
129 1dce_A Protein (RAB geranylger 98.3 9.2E-09 3.1E-13 102.3 -7.3 170 136-310 346-545 (567)
130 2xot_A Amphoterin-induced prot 98.3 4.2E-07 1.4E-11 85.2 4.2 164 142-310 21-201 (361)
131 2v9t_B SLIT homolog 2 protein 98.3 2.4E-07 8.3E-12 80.4 2.3 75 142-218 14-90 (220)
132 3sb4_A Hypothetical leucine ri 98.2 1.4E-06 4.8E-11 80.5 5.9 89 251-344 225-327 (329)
133 3un9_A NLR family member X1; l 98.1 6.8E-08 2.3E-12 90.9 -4.3 149 139-288 72-250 (372)
134 2e31_A FBS1, F-box only protei 98.1 1.7E-06 5.8E-11 77.3 3.7 37 10-46 49-86 (297)
135 1dce_A Protein (RAB geranylger 98.1 1.3E-06 4.5E-11 86.7 3.1 100 162-287 442-543 (567)
136 3l2o_B F-box only protein 4; s 98.0 1.6E-06 5.3E-11 76.6 1.6 34 12-45 5-38 (312)
137 4b8c_D Glucose-repressible alc 98.0 3.3E-07 1.1E-11 93.9 -3.6 40 228-267 292-331 (727)
138 1w8a_A SLIT protein; signaling 97.9 1.3E-05 4.3E-10 67.8 5.2 113 129-265 21-139 (192)
139 4b8c_D Glucose-repressible alc 97.8 3.3E-06 1.1E-10 86.5 1.0 105 182-289 220-328 (727)
140 3v7d_B Cell division control p 97.8 5.2E-06 1.8E-10 80.0 2.0 42 7-48 10-51 (464)
141 2wfh_A SLIT homolog 2 protein 97.7 2.2E-05 7.6E-10 66.4 4.5 100 139-240 31-137 (193)
142 2o6r_A Variable lymphocyte rec 97.7 2.1E-05 7.1E-10 65.4 3.8 114 129-266 20-138 (177)
143 2o6r_A Variable lymphocyte rec 97.7 1.5E-05 5.1E-10 66.3 2.6 123 142-288 10-135 (177)
144 2ovr_B FBW7, F-BOX/WD repeat p 97.6 3.2E-05 1.1E-09 74.2 4.4 40 6-45 13-52 (445)
145 2wfh_A SLIT homolog 2 protein 97.6 2.6E-05 8.8E-10 66.0 3.2 120 142-265 13-139 (193)
146 4fdw_A Leucine rich hypothetic 97.6 8.4E-05 2.9E-09 70.4 6.7 195 139-345 157-377 (401)
147 1p22_A F-BOX/WD-repeat protein 97.6 1.9E-05 6.4E-10 75.7 1.6 39 7-45 6-48 (435)
148 3sb4_A Hypothetical leucine ri 97.5 2.8E-05 9.7E-10 71.6 2.6 94 207-304 225-327 (329)
149 1w8a_A SLIT protein; signaling 97.5 4.7E-05 1.6E-09 64.3 3.5 100 115-217 30-135 (192)
150 1io0_A Tropomodulin; LRR prote 97.4 5.5E-05 1.9E-09 63.4 1.8 39 249-287 118-161 (185)
151 3g39_A Variable lymphocyte rec 97.3 0.00018 6.2E-09 59.3 4.6 77 117-198 12-90 (170)
152 2r9u_A Variable lymphocyte rec 97.3 0.00025 8.4E-09 58.7 4.8 66 129-197 25-92 (174)
153 1io0_A Tropomodulin; LRR prote 96.8 0.00016 5.6E-09 60.5 -0.2 93 101-193 21-128 (185)
154 4fdw_A Leucine rich hypothetic 96.8 0.0032 1.1E-07 59.5 8.2 197 115-328 158-379 (401)
155 3g39_A Variable lymphocyte rec 96.6 0.0012 4.2E-08 54.2 3.6 57 229-286 30-87 (170)
156 2r9u_A Variable lymphocyte rec 96.6 0.0015 5.1E-08 53.9 4.1 57 229-286 33-90 (174)
157 4fs7_A Uncharacterized protein 96.4 0.0029 9.9E-08 59.6 5.0 91 248-346 272-374 (394)
158 2ifg_A High affinity nerve gro 95.8 0.0049 1.7E-07 56.8 3.7 88 128-218 21-113 (347)
159 3rw6_A Nuclear RNA export fact 95.2 0.0047 1.6E-07 54.6 1.0 79 114-192 170-257 (267)
160 2ifg_A High affinity nerve gro 95.1 0.02 7E-07 52.6 4.9 81 204-286 27-112 (347)
161 3rw6_A Nuclear RNA export fact 94.8 0.0076 2.6E-07 53.2 1.3 33 253-285 221-259 (267)
162 4gt6_A Cell surface protein; l 94.4 0.096 3.3E-06 49.0 8.0 95 248-346 261-365 (394)
163 4fs7_A Uncharacterized protein 93.3 0.032 1.1E-06 52.4 2.3 94 248-345 249-350 (394)
164 1pgv_A TMD-1, tropomodulin TMD 89.6 0.36 1.2E-05 40.2 4.5 36 251-286 97-135 (197)
165 4gt6_A Cell surface protein; l 89.0 0.29 9.8E-06 45.7 4.0 75 228-308 287-367 (394)
166 1pgv_A TMD-1, tropomodulin TMD 87.4 0.094 3.2E-06 43.8 -0.4 97 100-196 25-136 (197)
167 4h09_A Hypothetical leucine ri 81.4 9.4 0.00032 34.9 10.4 32 114-148 46-78 (379)
168 4h09_A Hypothetical leucine ri 76.9 2 6.8E-05 39.5 4.2 13 249-261 283-295 (379)
169 3rfe_A Platelet glycoprotein I 57.6 3.9 0.00013 31.3 1.5 42 130-173 24-67 (130)
170 3rfe_A Platelet glycoprotein I 43.1 11 0.00037 28.6 2.0 34 230-263 32-66 (130)
171 2kwv_A RAD30 homolog B, DNA po 21.2 57 0.0019 19.5 1.9 16 10-25 19-34 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=5.1e-24 Score=214.77 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=29.4
Q ss_pred CcccCCCCCHHHHHHHHccCC-hHHHHHHhhhhhchhhh
Q 015171 8 EVDGISTLPEPILHHILSFLP-FKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~-~~~~~~~~~vskrWr~l 45 (412)
+.|+++.|||||+.+||+||+ .+|+++++.|||||+++
T Consensus 2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 358999999999999999999 99999999999999987
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=2.6e-23 Score=209.56 Aligned_cols=328 Identities=13% Similarity=0.118 Sum_probs=159.2
Q ss_pred CCcccCC----CCCHHHHHHHHccC-ChHHHHHHhhhhhchhhhcccCCe-eeeecccCCCchhhHH-------------
Q 015171 7 LEVDGIS----TLPEPILHHILSFL-PFKEVAQTCLLSKRWKQVWQTFPD-VEVGGMFTNPRKSKEI------------- 67 (412)
Q Consensus 7 ~~~D~is----~LPdevl~~Ils~L-~~~~~~~~~~vskrWr~lw~~~~~-l~~~~~~~~~~~~~~~------------- 67 (412)
++.|+++ .||||++.+||+|| +.+|+++++.|||||++++...+. +.+...+... ...+
T Consensus 4 ~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~L~~L~L~ 81 (592)
T 3ogk_B 4 PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT--PDRLSRRFPNLRSLKLK 81 (592)
T ss_dssp --------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSC--HHHHHHHCTTCSEEEEE
T ss_pred hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccC--hHHHHHhCCCCeEEEec
Confidence 3456666 89999999999999 899999999999999987533222 2222111110 0000
Q ss_pred -------------------HHHHHHHHhccccCCCCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCC-c
Q 015171 68 -------------------LTSLEPALLNRQRKMISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRS-E 127 (412)
Q Consensus 68 -------------------~~~v~~~ll~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~-~ 127 (412)
...+.... ...+.++.+.++.. .-......++......++++|++..+.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~L~~L~L~~~-----~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 82 GKPRAAMFNLIPENWGGYVTPWVTEIS----NNLRQLKSVHFRRM-----IVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp CSCGGGGGTCSCTTSCCBCHHHHHHHH----HHCTTCCEEEEESC-----BCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCcchhhcccccccccccchHHHHHHH----hhCCCCCeEEeecc-----EecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 00000000 01123444444422 1112222333333323466666655331 1
Q ss_pred cccCCccccCCCCeeEEEEeceeecCCC------CCccCcccceeEeeeEEeC---HHHHHHHHcCCCCccEEEeeccCC
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQPS------ENVKLFSLRKLALREVCAD---DQAIASLISGCPLIEYLEIRSCEG 198 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~~------~~~~l~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~c~~ 198 (412)
...++.....|++|++|+|++|.+.... ....+++|++|+++++.++ ...+..++.+||+|++|++++|..
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1222233345677777777776653321 2345677777777666653 456666677777777777777643
Q ss_pred ccee-eccCCCCccEEEEeeCC-----------------------------CCceEEEecCcccEEEeeeeec--cceEE
Q 015171 199 LESL-DLVNLSNLKEIILVNTS-----------------------------DIKRVEIKTSNVNALAIHQTYL--FPIEV 246 (412)
Q Consensus 199 ~~~~-~i~~l~~L~~L~i~~c~-----------------------------~l~~~~~~~p~L~~L~l~~~~~--~~~~~ 246 (412)
.... .+..+++|+.|.+..+. .+..+...+++|++|+++++.. .....
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~ 312 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence 2100 11123455555554220 1111111244555555555441 11111
Q ss_pred eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc----------ccccccc-----cccccccceEEEecCccc
Q 015171 247 NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK----------CHKLTSV-----RISSPCLKTLILECCDKL 311 (412)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~----------c~~l~~l-----~~~~~~L~~L~l~~c~~l 311 (412)
.+..+++|++|+++ +.+.+..+..+...+++|++|++.+ |..++.. ...+++|++|++ +|..+
T Consensus 313 ~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l 390 (592)
T 3ogk_B 313 LIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDI 390 (592)
T ss_dssp HHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCC
T ss_pred HHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCc
Confidence 23455566666555 3344444444455556666666663 4333321 123556666666 33332
Q ss_pred c-----eeeccCCCeeeEEEecce---e-----------eecccccccceEEEEE
Q 015171 312 I-----QVEIETPNLSIFKYHGDL---I-----------SFSSNALSLSETSLCF 347 (412)
Q Consensus 312 ~-----~~~~~~~~L~~l~~~~~~---~-----------~~l~~~~~L~~l~i~~ 347 (412)
. .+...+++|+.|.+.+.. . ..+.++++|++|.++.
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 1 112235667777665321 1 1244567777777754
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.9e-23 Score=195.57 Aligned_cols=235 Identities=17% Similarity=0.201 Sum_probs=129.0
Q ss_pred CcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhcccCCeeeeecccCCCchhhHHHHHHHHHHhccccCCCCcee
Q 015171 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQTFPDVEVGGMFTNPRKSKEILTSLEPALLNRQRKMISIKK 87 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~~~~l~~~~~~~~~~~~~~~~~~v~~~ll~~~~~~~~l~~ 87 (412)
+...++.||||++.+||+||+.+|+++++.|||+|+++... |. .++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~--------------------------------~~~~ 51 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ES--------------------------------LWQT 51 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-ST--------------------------------TSSE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-ch--------------------------------hhee
Confidence 34568999999999999999999999999999999987532 11 1111
Q ss_pred EEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC---CCCccCcccc
Q 015171 88 FSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLR 164 (412)
Q Consensus 88 l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~ 164 (412)
+.++... .. +..+.....++++.+++..... ...+..++.+++|++|++++|.+... .....+++|+
T Consensus 52 l~l~~~~----~~----~~~~~~~~~~~l~~L~l~~n~l--~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 52 LDLTGKN----LH----PDVTGRLLSQGVIAFRCPRSFM--DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp EECTTCB----CC----HHHHHHHHHTTCSEEECTTCEE--CSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred ecccccc----CC----HHHHHhhhhccceEEEcCCccc--cccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 1111000 01 1223333445777777665321 12333355677888888887765421 3355677778
Q ss_pred eeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee----eccCCCCccEEEEeeCCCCceE-----EEecC-cccEE
Q 015171 165 KLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----DLVNLSNLKEIILVNTSDIKRV-----EIKTS-NVNAL 234 (412)
Q Consensus 165 ~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~----~i~~l~~L~~L~i~~c~~l~~~-----~~~~p-~L~~L 234 (412)
+|+++++.+++..... +..+++|++|++++|..+... .+..+++|+.|++++|..+... ...+| +|++|
T Consensus 122 ~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 200 (336)
T ss_dssp EEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred EEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence 8887777766555544 455777777777777544321 1233566666666666333221 11334 55555
Q ss_pred Eeeeeec----cceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccc
Q 015171 235 AIHQTYL----FPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 235 ~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
+++++.. ..+...+..+++|++|+++++. +.+..+. .+..+++|++|++++|
T Consensus 201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTC
T ss_pred EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCC
Confidence 5544420 1111223344555555554444 3322222 2234455555555544
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=1.6e-16 Score=147.88 Aligned_cols=203 Identities=20% Similarity=0.216 Sum_probs=129.6
Q ss_pred HHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCC
Q 015171 107 CLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGC 185 (412)
Q Consensus 107 ~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~ 185 (412)
.+......+++.|++...... .+|..++.+++|++|+++++.+... .....+++|++|+|+++.+. .+..-+..+
T Consensus 74 ~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l 149 (328)
T 4fcg_A 74 LLEDATQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASL 149 (328)
T ss_dssp HHHHHTSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGC
T ss_pred HHhcccccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcC
Confidence 344444568999999985543 7898899999999999999987633 45778999999999999875 333346789
Q ss_pred CCccEEEeeccCCcceee-----------ccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCC
Q 015171 186 PLIEYLEIRSCEGLESLD-----------LVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSC 251 (412)
Q Consensus 186 p~Le~L~l~~c~~~~~~~-----------i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~ 251 (412)
++|++|++++|.....+. +..+++|+.|++++| .+..++ ..+++|++|+++++....++..+..+
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l 228 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence 999999999987654331 112566777777666 222221 13456666666666533333345566
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE 315 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~ 315 (412)
++|++|++++|.+... ++..+..+++|+.|++++|...+.++. ..++|+.|+|++|.....++
T Consensus 229 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 229 PKLEELDLRGCTALRN-YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp TTCCEEECTTCTTCCB-CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred CCCCEEECcCCcchhh-hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence 6666666666554432 222344566666666666655544443 34556666666666554433
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=8e-15 Score=136.33 Aligned_cols=204 Identities=20% Similarity=0.257 Sum_probs=158.1
Q ss_pred CCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEE
Q 015171 138 VESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEII 214 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~ 214 (412)
..++++|+++++.+... .....+++|++|+|+++.+. .+...+..+++|++|++++|... .+ .+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 47899999999887644 45677999999999999875 23334578899999999998654 22 355679999999
Q ss_pred EeeCCCCceEE------------EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 215 LVNTSDIKRVE------------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 215 i~~c~~l~~~~------------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+++|.....++ ..+++|+.|+++++....++..+..+++|++|+++++.+.. +...+..+++|+.|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEE
Confidence 99984333332 13899999999999844555668889999999999998875 34446789999999
Q ss_pred ecccccccccccc---cccccceEEEecCcccceee---ccCCCeeeEEEeccee-----eecccccccceEEEE
Q 015171 283 SMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLC 346 (412)
Q Consensus 283 ~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~ 346 (412)
++++|...+.++. .+++|+.|++++|.....++ ..+++|+.|.+.++.. ..+.++++|+.+.+.
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 9999877766654 56889999999998875544 3567888998888654 567777888888774
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=1.3e-14 Score=135.92 Aligned_cols=223 Identities=17% Similarity=0.155 Sum_probs=108.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .++. +..+++|++|++++|.+...+....+++|++|+++++.+.+.. . +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~--~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQIT--DISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEEC
T ss_pred CCccEEEccCCccc--cchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCceeEEEC
Confidence 35666666553222 2333 5556666666666665554444556666666666666552211 1 455666666666
Q ss_pred eccCCccee-eccCCCCccEEEEeeCC--CCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 194 RSCEGLESL-DLVNLSNLKEIILVNTS--DIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 194 ~~c~~~~~~-~i~~l~~L~~L~i~~c~--~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
++|.....+ .+..+++|+.|++.+|. .... ...+++|+.|+++++...... .+..+++|+.|+++++.+....
T Consensus 140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~-- 215 (347)
T 4fmz_A 140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-PLASLTSLHYFTAYVNQITDIT-- 215 (347)
T ss_dssp TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG--
T ss_pred CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc-cccCCCccceeecccCCCCCCc--
Confidence 666443322 23345566666666551 1111 113455666666555421111 1445555555555555544311
Q ss_pred HhhcCCCCccEEecccccccccc--cccccccceEEEecCcccc-eeeccCCCeeeEEEeccee---eecccccccceEE
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV--RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETS 344 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~~---~~l~~~~~L~~l~ 344 (412)
. +..+++|+.|++++|.. +.+ ...+++|+.|++++|.... ......++|+.+.+.++.. ..+..+++|++|.
T Consensus 216 ~-~~~~~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 293 (347)
T 4fmz_A 216 P-VANMTRLNSLKIGNNKI-TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLF 293 (347)
T ss_dssp G-GGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred h-hhcCCcCCEEEccCCcc-CCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEE
Confidence 1 34455566666655421 111 1234555555555553221 1112344555555555433 2344455566666
Q ss_pred EEEe
Q 015171 345 LCFS 348 (412)
Q Consensus 345 i~~~ 348 (412)
+..+
T Consensus 294 L~~n 297 (347)
T 4fmz_A 294 LNNN 297 (347)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5443
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.48 E-value=9.1e-14 Score=130.19 Aligned_cols=226 Identities=14% Similarity=0.148 Sum_probs=170.2
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++++|++..+... .+|. +..+++|++|++++|.+...+....+++|++|+++++.+.+- . -+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~--~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVA--SIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCC--CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccc--cchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEE
Confidence 468999999875433 3443 777999999999999887665588999999999999988432 2 267899999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
+++|.......+..+++|+.|++++|.....+. ..+++|++|+++++..... ..+..+++|++|+++++.+... .
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~ 193 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDI--S 193 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECTTSCCCCC--G
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-hhhccCCCCCEEEccCCccccc--c
Confidence 999865443346678999999999984444332 2578999999998873221 1278899999999999988762 2
Q ss_pred HhhcCCCCccEEecccccccccc-cccccccceEEEecCcccc-eeeccCCCeeeEEEeccee---eecccccccceEEE
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV-RISSPCLKTLILECCDKLI-QVEIETPNLSIFKYHGDLI---SFSSNALSLSETSL 345 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~L~~L~l~~c~~l~-~~~~~~~~L~~l~~~~~~~---~~l~~~~~L~~l~i 345 (412)
. +..+++|+.|+++++...... ...+++|+.|++++|.... .....+++|+.+.+.++.. ..+..+++|+++.+
T Consensus 194 ~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 272 (347)
T 4fmz_A 194 P-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272 (347)
T ss_dssp G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred c-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEc
Confidence 2 667899999999986332221 2356899999999986542 1134678999999988765 45677899999999
Q ss_pred EEe
Q 015171 346 CFS 348 (412)
Q Consensus 346 ~~~ 348 (412)
..+
T Consensus 273 ~~n 275 (347)
T 4fmz_A 273 GSN 275 (347)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=3.1e-14 Score=147.51 Aligned_cols=230 Identities=18% Similarity=0.119 Sum_probs=108.4
Q ss_pred CceEEEEEeCCCccccCCc--cccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHH--HHHcCCCC
Q 015171 115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIA--SLISGCPL 187 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~--~l~~~~p~ 187 (412)
++++|+++.+... ..+|. .+.++++|++|++++|.+... .....+++|++|+++++.++..... ..+.++++
T Consensus 101 ~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~ 179 (768)
T 3rgz_A 101 SLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179 (768)
T ss_dssp TCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred CCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence 4555555542211 12333 455555555555555544322 1114555566666555554221111 12445556
Q ss_pred ccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceE--EEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeecccc
Q 015171 188 IEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRV--EIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 188 Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~--~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
|++|++++|..........+++|+.|++++|.-...+ ...+++|++|+++++. ....+..+..+++|++|+++++.+
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCC
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcc
Confidence 6666665554333333344556666666555111101 1134556666665554 112223445556666666655554
Q ss_pred chHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccce---eeccCCCeeeEEEeccee------
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI------ 331 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~------ 331 (412)
.... +. ..+++|++|+++++.....++. .+++|++|++++|..... ....+++|+.|.+.++..
T Consensus 260 ~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 260 VGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp EESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred cCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 4311 11 1455666666665433222222 235666666666643221 123455666666655443
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.+..+
T Consensus 337 ~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp HHHTTCTTCCEEECCSS
T ss_pred HHHhcCCCCCEEeCcCC
Confidence 12556666777766544
No 9
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.46 E-value=7e-14 Score=140.59 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=71.4
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCC-CccccCCccccCCCCeeEEEEeceeecCC------C
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWR-SERRNLPEIIFYVESLHVLELSYCKLQQP------S 155 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~-~~~~~lp~~~~~~~~L~~L~L~~~~~~~~------~ 155 (412)
+.++.+.++... .....+..... ..+++++|++..+. .....++....+|++|++|++++|.+... .
T Consensus 105 ~~L~~L~L~~~~----~~~~~~~~l~~--~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMV----VTDDCLELIAK--SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCB----CCHHHHHHHHH--HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred CCCCeEEeeCcE----EcHHHHHHHHH--hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 467777776432 11112211111 24688999888752 22223444455788999999998876432 2
Q ss_pred CCccCcccceeEeeeEE--eCHHHHHHHHcCCCCccEEEeeccC
Q 015171 156 ENVKLFSLRKLALREVC--ADDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 156 ~~~~l~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
....+++|++|+++++. +++..+..+...||+|++|++++|.
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 23467799999998886 4677788887888999999998873
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.44 E-value=1e-14 Score=146.65 Aligned_cols=121 Identities=14% Similarity=0.071 Sum_probs=74.9
Q ss_pred cCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc---ccccccc---------cccccccceEEEecCcc-cc---
Q 015171 249 SSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK---CHKLTSV---------RISSPCLKTLILECCDK-LI--- 312 (412)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~---c~~l~~l---------~~~~~~L~~L~l~~c~~-l~--- 312 (412)
..+++|++|++.++.+.+..+..+...+++|++|++.+ |..++.. ...+++|++|+++.|.+ +.
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 45777888888777777766666666678888888863 3344432 22467888888877664 11
Q ss_pred --eeeccCCCeeeEEEeccee------eecccccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 313 --QVEIETPNLSIFKYHGDLI------SFSSNALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 313 --~~~~~~~~L~~l~~~~~~~------~~l~~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
.+...+++|+.|.+.++.. .++..+++|++|.|..+.- .........+.+..++.+.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF---SERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC---BHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC---cHHHHHHHHHhcCccCeeE
Confidence 2223467888888876543 3556778888888876631 1222333444455554443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.44 E-value=2.7e-14 Score=144.10 Aligned_cols=216 Identities=17% Similarity=0.111 Sum_probs=99.3
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee----e
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL----D 203 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~----~ 203 (412)
.+|..+..+++|++|+++++.+... .....+++|++|+++++.+........+..+++|++|++++|...... .
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 4444444445555555555443321 233444555555555443311111111334555555555554332211 2
Q ss_pred ccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeeccccchHHHHHhhcCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
+..+++|+.|++++| .+..+. ..+++|++|+++++.... ....+..+++|+.|+++++.+... ....+..++
T Consensus 372 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 449 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDGLP 449 (606)
T ss_dssp TTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT-CTTTTTTCT
T ss_pred cccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc-CHHHHhCCC
Confidence 333455555555554 111111 124556666665554111 112245566666666666655442 123345566
Q ss_pred CccEEeccccccccc------ccccccccceEEEecCccccee---eccCCCeeeEEEeccee-----eecccccccceE
Q 015171 278 LLEYLSMTKCHKLTS------VRISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSET 343 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~------l~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l 343 (412)
+|+.|+++++...+. ....+++|+.|++++|...... ...+++|+.+.+.++.. ..+.++++| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 666666666532221 1123456677777666443211 12445666666665543 344455555 55
Q ss_pred EEEEe
Q 015171 344 SLCFS 348 (412)
Q Consensus 344 ~i~~~ 348 (412)
.+..+
T Consensus 529 ~L~~N 533 (606)
T 3t6q_A 529 NLASN 533 (606)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 55433
No 12
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=4.1e-14 Score=131.90 Aligned_cols=221 Identities=18% Similarity=0.237 Sum_probs=163.5
Q ss_pred HHHHHHHHhC-CceEEEEEeCCCccccCCccccCC--CCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHH
Q 015171 105 GRCLGLAIES-EVKELVLVHWRSERRNLPEIIFYV--ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIAS 180 (412)
Q Consensus 105 ~~~l~~~~~~-~l~~L~l~~~~~~~~~lp~~~~~~--~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~ 180 (412)
.+|-..+..+ ..+.++++..... |..+... ++++.|+++++.+... +....+++|++|+++++.+++..+..
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~ 112 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH
T ss_pred HHHHHHhcCchhheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH
Confidence 4566555433 4788887753221 3334444 7899999999877654 55668999999999999998887888
Q ss_pred HHcCCCCccEEEeeccCCcce--eeccCCCCccEEEEeeCCCCce--E---EEecCcccEEEeeee-ecc--ceEEeccC
Q 015171 181 LISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKR--V---EIKTSNVNALAIHQT-YLF--PIEVNVSS 250 (412)
Q Consensus 181 l~~~~p~Le~L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~--~---~~~~p~L~~L~l~~~-~~~--~~~~~~~~ 250 (412)
.+..||+|++|++++|..... -.+..+++|+.|++++|..+.. + ...+++|++|+++++ ... .+...+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 899999999999999964321 1345689999999999854442 2 236799999999998 421 13344678
Q ss_pred CC-CCcEEEeecc--ccchHHHHHhhcCCCCccEEeccccccccc--cc--ccccccceEEEecCcccce----eeccCC
Q 015171 251 CG-NLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTS--VR--ISSPCLKTLILECCDKLIQ----VEIETP 319 (412)
Q Consensus 251 ~~-~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~--~~~~~L~~L~l~~c~~l~~----~~~~~~ 319 (412)
++ +|++|+++++ .+.+..+...+..+++|+.|++++|..++. +. ...++|++|++++|..+.. ....++
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 272 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP 272 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCC
Confidence 89 9999999998 567666777788899999999999875432 11 2568999999999975432 134578
Q ss_pred CeeeEEEecc
Q 015171 320 NLSIFKYHGD 329 (412)
Q Consensus 320 ~L~~l~~~~~ 329 (412)
+|+.|.+.|+
T Consensus 273 ~L~~L~l~~~ 282 (336)
T 2ast_B 273 TLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTS
T ss_pred CCCEEeccCc
Confidence 8888888775
No 13
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.43 E-value=8.4e-14 Score=128.56 Aligned_cols=230 Identities=14% Similarity=0.051 Sum_probs=121.3
Q ss_pred CceEEEEEeCCCc-cccCCccccCCCCeeEEEEec-eeec--CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSE-RRNLPEIIFYVESLHVLELSY-CKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~-~~~lp~~~~~~~~L~~L~L~~-~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++|+++..... ...+|..+.++++|++|++++ +.+. .+.....+++|++|+++++.+... +...+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCE
Confidence 5666666653322 124666666777777777774 4332 223456677777777777665311 1122455677777
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCCCceEEE---ecC-cccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI---KTS-NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~---~~p-~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|.....+ .+..+++|+.|+++++.--..++. ..+ +|+.|+++++. ....+..+..++ |+.|+++++.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 777766433211 234456777777766521111111 233 67777776665 112233344454 7777777766
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccccc--ccccccceEEEecCcccceee---ccCCCeeeEEEeccee----eec
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFS 334 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~----~~l 334 (412)
+... ....+..+++|+.|+++++.....++ ...++|++|+++++.....++ ..+++|+.+.+.++.. ...
T Consensus 209 l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGD-ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEC-CGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCc-CCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6542 23345566777777777653322222 234667777777665432222 2345566665555433 111
Q ss_pred ccccccceEEEEE
Q 015171 335 SNALSLSETSLCF 347 (412)
Q Consensus 335 ~~~~~L~~l~i~~ 347 (412)
.++++|+.+.+..
T Consensus 288 ~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 288 GNLQRFDVSAYAN 300 (313)
T ss_dssp TTGGGSCGGGTCS
T ss_pred ccccccChHHhcC
Confidence 3445555555533
No 14
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.41 E-value=3.5e-13 Score=130.95 Aligned_cols=117 Identities=17% Similarity=0.115 Sum_probs=68.9
Q ss_pred cccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc-c---ccccccceEE
Q 015171 230 NVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-R---ISSPCLKTLI 304 (412)
Q Consensus 230 ~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~---~~~~~L~~L~ 304 (412)
+|+.|+++++.... ....+..+++|++|+++++.+... ....+..+++|+.|+++++.. +.+ + ..+++|+.|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEE
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEE
Confidence 45555555544111 122355667777777777766542 122355677778888777533 222 1 2456778888
Q ss_pred EecCcccce---eeccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 305 LECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 305 l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
+++|..... ....+++|+.+.+.+... ..+..+++|++|.++.+
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence 877754322 123456777777777654 34566778888888666
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.41 E-value=2.4e-13 Score=140.86 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=109.9
Q ss_pred cCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 136 FYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
..+++|++|++++|.+... +....+++|++|+++++.+.... ...+..+++|++|++++|..........+++|+.|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~ 275 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence 5677888888888766543 44677888888888888775333 334678888888888888654433333567888888
Q ss_pred EeeCC---CCceEEE-ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 215 LVNTS---DIKRVEI-KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 215 i~~c~---~l~~~~~-~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+++|. .+..... .+++|++|+++++. ....+..++.+++|++|+++++.+........+..+++|+.|+++++..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 88771 1111111 24788888888876 2233455677888888888888776432333356678888888887643
Q ss_pred cccccc---cc-cccceEEEecCc
Q 015171 290 LTSVRI---SS-PCLKTLILECCD 309 (412)
Q Consensus 290 l~~l~~---~~-~~L~~L~l~~c~ 309 (412)
...++. .. ++|+.|++++|.
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~ 379 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNN 379 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSE
T ss_pred CccccHHHHhhhcCCcEEEccCCC
Confidence 322222 11 255555555543
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=8.2e-13 Score=128.86 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=33.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCA 173 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~ 173 (412)
+++++|+++.+... .++. +..+++|++|++++|.+...+....+++|++|+++++.+
T Consensus 90 ~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l 146 (466)
T 1o6v_A 90 TKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 146 (466)
T ss_dssp TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred ccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCcc
Confidence 46666666653222 2333 556666666666666554444456666666666666666
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.40 E-value=4.1e-13 Score=135.41 Aligned_cols=208 Identities=16% Similarity=0.158 Sum_probs=99.0
Q ss_pred ccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 135 IFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 135 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
+..+++|+.|+++++.+...+....+++|++|+++++.++ .+..+ .++.|++|++++|.......+..+++|+.|+
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ 356 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD 356 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence 3344556666666555443344445555666666555541 11121 4555555555555444443444445555555
Q ss_pred EeeCCCCceEE------EecCcccEEEeeeeeccceEEec-------------------------cCCCCCcEEEeeccc
Q 015171 215 LVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNV-------------------------SSCGNLKCLKFDFLP 263 (412)
Q Consensus 215 i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~-------------------------~~~~~L~~L~l~~~~ 263 (412)
++++ .+..+. ..+++|++|+++++........+ ..+++|+.|+++++.
T Consensus 357 ls~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 357 LSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CCSS-CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSC
T ss_pred CcCC-ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCC
Confidence 5544 111111 12344444444444311112233 344555555555554
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccc-cc---ccccccceEEEecCccccee---eccCCCeeeEEEeccee-----
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTS-VR---ISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI----- 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-l~---~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~----- 331 (412)
+... ....+..+++|+.|+++++..... ++ ..+++|+.|++++|...... ...+++|+.+.+.++..
T Consensus 436 l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 436 TKID-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCcc-chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 4332 122234455566666655432221 11 23456666666666433211 12445666666666543
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.++.+
T Consensus 515 ~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 515 SHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp GGTTTCTTCCEEECTTS
T ss_pred HHccCCCcCCEEECCCC
Confidence 34556667777776444
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.40 E-value=1.7e-13 Score=126.11 Aligned_cols=235 Identities=18% Similarity=0.155 Sum_probs=126.4
Q ss_pred ccCCccccCCCCeeEEEEeceeecCCC--CCccCcccceeEeeeEEeCHHH-HHHHHcCCCCccEEEeeccCCcce-eec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LDL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~p~Le~L~l~~c~~~~~-~~i 204 (412)
..+|..+. ++|++|+++++.+...+ .+..+++|+.|+++++.++... .......+++|++|++++|..... ..+
T Consensus 20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 34454332 56777777777654332 2456777777777776653211 011123567777777777643321 124
Q ss_pred cCCCCccEEEEeeC--CCCce--EEEecCcccEEEeeeeecc-ceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCc
Q 015171 205 VNLSNLKEIILVNT--SDIKR--VEIKTSNVNALAIHQTYLF-PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLL 279 (412)
Q Consensus 205 ~~l~~L~~L~i~~c--~~l~~--~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 279 (412)
..+++|+.|+++++ ..+.. ....+++|++|+++++... .....+..+++|++|+++++.+.....+..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 44677777777665 11111 1113567777777766511 1122345667777777777766543334445566777
Q ss_pred cEEeccccccccccc---ccccccceEEEecCcccc--e-eeccCCCeeeEEEeccee-----eecccc-cccceEEEEE
Q 015171 280 EYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--Q-VEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCF 347 (412)
Q Consensus 280 ~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~--~-~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i~~ 347 (412)
+.|+++++......+ ...++|+.|+++++.... . ....+++|+.+.+.+... ..+... ++|+.+.+..
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 777777753222111 134667777777765432 1 112456677777766544 234444 4788888866
Q ss_pred eccchh-hHHHHHHHHHhh
Q 015171 348 SSHLMV-NIEWVVEYFEIL 365 (412)
Q Consensus 348 ~~~~~~-~~~~~~~~~~~l 365 (412)
+.-.+. ...++.+.++..
T Consensus 258 N~~~~~c~~~~~~~~l~~~ 276 (306)
T 2z66_A 258 NDFACTCEHQSFLQWIKDQ 276 (306)
T ss_dssp CCEECSGGGHHHHHHHHHT
T ss_pred CCeecccChHHHHHHHHhh
Confidence 632222 334455544443
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.40 E-value=8.9e-13 Score=128.61 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=47.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .++ .+..+++|++|++.+ ..........+++|+.|+++++.+.+-. .+..+++|++|++
T Consensus 134 ~~L~~L~l~~n~l~--~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l 206 (466)
T 1o6v_A 134 TNLNRLELSSNTIS--DIS-ALSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS---VLAKLTNLESLIA 206 (466)
T ss_dssp TTCSEEEEEEEEEC--CCG-GGTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEEC
T ss_pred CCCCEEECCCCccC--CCh-hhccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCCh---hhccCCCCCEEEe
Confidence 57888888774322 122 245556666666643 2222223445556666666555542211 1344555555555
Q ss_pred eccCCcceeeccCCCCccEEEEeeC
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
++|.......+..+++|+.|++++|
T Consensus 207 ~~n~l~~~~~~~~l~~L~~L~l~~n 231 (466)
T 1o6v_A 207 TNNQISDITPLGILTNLDELSLNGN 231 (466)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred cCCcccccccccccCCCCEEECCCC
Confidence 5554322222333445555555544
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.40 E-value=9.8e-13 Score=123.51 Aligned_cols=246 Identities=14% Similarity=0.093 Sum_probs=169.4
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .+|. .+..+++|++|+++++.+... ..+..+++|++|+++++.++.-. ...+..+++|++
T Consensus 52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~ 128 (353)
T 2z80_A 52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF 128 (353)
T ss_dssp TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence 47999998875433 4554 577899999999999876533 45778999999999999884321 233678999999
Q ss_pred EEeeccCCcce---eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeecc
Q 015171 191 LEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFL 262 (412)
Q Consensus 191 L~l~~c~~~~~---~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 262 (412)
|++++|....- -.+..+++|+.|++++|..+..+.. .+++|++|+++++.... ....+..+++|++|+++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 99999854321 1345679999999999865555532 46789999999887222 2345678899999999999
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc-------ccccccceEEEecCcccc----e---eeccCCCeeeEEEec
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-------ISSPCLKTLILECCDKLI----Q---VEIETPNLSIFKYHG 328 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-------~~~~~L~~L~l~~c~~l~----~---~~~~~~~L~~l~~~~ 328 (412)
.+... .......+++|+.|+++++.. +.+. ...+.++.+++..+.... . ....+++|+.+.+.+
T Consensus 209 ~l~~~-~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 209 QHILL-LEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp CSTTH-HHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred ccccc-hhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence 87652 233455689999999998632 2211 124557777777764321 1 123567888888887
Q ss_pred cee-----eecccccccceEEEEEeccch--hhHHHHHHHHHh
Q 015171 329 DLI-----SFSSNALSLSETSLCFSSHLM--VNIEWVVEYFEI 364 (412)
Q Consensus 329 ~~~-----~~l~~~~~L~~l~i~~~~~~~--~~~~~~~~~~~~ 364 (412)
+.. ..+.++++|+++.+..+...+ ...+++......
T Consensus 287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~ 329 (353)
T 2z80_A 287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 329 (353)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence 765 335778899999998773322 234454444443
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.37 E-value=2.4e-13 Score=137.15 Aligned_cols=216 Identities=17% Similarity=0.096 Sum_probs=129.8
Q ss_pred CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHH-HHHHHcCCCCccEEEeeccCCcce-eeccCCCCccEEE
Q 015171 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQA-IASLISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEII 214 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-l~~l~~~~p~Le~L~l~~c~~~~~-~~i~~l~~L~~L~ 214 (412)
.+++|++|+++++..........+++|+.|+++++.+.... ....+..+++|++|++++|..... -.+..+++|+.|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLD 405 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEE
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeE
Confidence 34444444444432211123334555555555555442110 112245566677776666643211 1234467777777
Q ss_pred EeeC--CCCc--eEEEecCcccEEEeeeeec-cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 215 LVNT--SDIK--RVEIKTSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 215 i~~c--~~l~--~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+++| .... .....+++|++|+++++.. ...+..+..+++|++|+++++.+.+..++..+..+++|+.|++++|..
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 7766 1111 0112467888888887762 212334678899999999999887643455677889999999999744
Q ss_pred ccccc---ccccccceEEEecCcccceee---ccCCCeeeEEEeccee----eeccccc-ccceEEEEEeccch
Q 015171 290 LTSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI----SFSSNAL-SLSETSLCFSSHLM 352 (412)
Q Consensus 290 l~~l~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~----~~l~~~~-~L~~l~i~~~~~~~ 352 (412)
.+..+ ...++|+.|++++|......+ ..+++|+.+.+.++.. ..+...+ +|+.+.+..+...|
T Consensus 486 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 33322 256889999999996543322 3467899998888765 3355665 69999998774333
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=6.3e-13 Score=130.04 Aligned_cols=230 Identities=18% Similarity=0.101 Sum_probs=133.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
+++++|+++.+... ...|..+.++++|++|+|+++.+... ..+..+++|++|+|+++.+.... ...+..+++|++|
T Consensus 56 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L 133 (477)
T 2id5_A 56 PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSL 133 (477)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEE
Confidence 46777776653221 12244556677777777777665433 23456777777777766552211 1224566777777
Q ss_pred EeeccCCcce--eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccce-EEeccCCCCCcEEEeecccc
Q 015171 192 EIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 192 ~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~ 264 (412)
+++++..... -.+..+++|+.|++.+| .+..+. ..+++|+.|+++++..... ...+..+++|+.|+++++..
T Consensus 134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred ECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 7776643221 12444677777777776 222222 1456777777776652211 12456677777777776654
Q ss_pred chHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccc---eeeccCCCeeeEEEeccee-----e
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----S 332 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~ 332 (412)
....... .....+|+.|+++++. ++.++ ..+++|+.|+++++..-. .....+++|+.|.+.+... .
T Consensus 213 ~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (477)
T 2id5_A 213 LDTMTPN-CLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290 (477)
T ss_dssp CCEECTT-TTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT
T ss_pred ccccCcc-cccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH
Confidence 3322112 2223478888887753 33333 245788888888876432 1223567888888877654 3
Q ss_pred ecccccccceEEEEEe
Q 015171 333 FSSNALSLSETSLCFS 348 (412)
Q Consensus 333 ~l~~~~~L~~l~i~~~ 348 (412)
.+.++++|+.|.++.+
T Consensus 291 ~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 291 AFRGLNYLRVLNVSGN 306 (477)
T ss_dssp TBTTCTTCCEEECCSS
T ss_pred HhcCcccCCEEECCCC
Confidence 5667889999998665
No 23
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.37 E-value=2.2e-12 Score=125.33 Aligned_cols=218 Identities=15% Similarity=0.114 Sum_probs=129.1
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+.... +| +..+++|++|++++|.+...+ ...+++|++|+++++.++.- . +..+++|++|++
T Consensus 64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC 134 (457)
T ss_dssp TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence 466666666543222 22 455666777777766654432 55666777777776666321 1 456677777777
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHh
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (412)
++|... .+.+..+++|+.|++++|..+..+.+ .+++|+.|+++++....+ .+..+++|+.|+++++.+... -
T Consensus 135 ~~N~l~-~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~l~~l~~L~~L~l~~N~l~~~----~ 207 (457)
T 3bz5_A 135 ARNTLT-EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTNNITKL----D 207 (457)
T ss_dssp TTSCCS-CCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--CCTTCTTCCEEECCSSCCSCC----C
T ss_pred CCCccc-eeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--ccccCCCCCEEECcCCcCCee----c
Confidence 666432 23455567777777776644444433 457778888777763322 266778888888887777653 1
Q ss_pred hcCCCCccEEecccccccccccc-cccccceEEEecCcccceeeccCCCeeeEEEeccee-------------eeccccc
Q 015171 273 ISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-------------SFSSNAL 338 (412)
Q Consensus 273 ~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~-------------~~l~~~~ 338 (412)
+..+++|+.|+++++. ++.++. .+++|+.|+++++..-......+++|+.+.+.+... ....+++
T Consensus 208 l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~ 286 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR 286 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence 5567888888888753 233333 557788888887754322223445555554332211 2344567
Q ss_pred ccceEEEEEe
Q 015171 339 SLSETSLCFS 348 (412)
Q Consensus 339 ~L~~l~i~~~ 348 (412)
+|+.|.++.+
T Consensus 287 ~L~~L~Ls~n 296 (457)
T 3bz5_A 287 KIKELDVTHN 296 (457)
T ss_dssp TCCCCCCTTC
T ss_pred cCCEEECCCC
Confidence 7777777544
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=1.9e-12 Score=123.22 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=44.2
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceee---ccCCCe
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVE---IETPNL 321 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~---~~~~~L 321 (412)
+..+++|++|+++++.+... ....+..+++|+.|+++++. ++.++. ..++|+.|++++|... .++ ..+++|
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 320 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL 320 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEE-ESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred HcCCCCccEEECCCCcCCCc-ChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence 34445555555555544431 12223445555555555532 222221 3455555555555321 111 123455
Q ss_pred eeEEEeccee--eecccccccceEEEEEe
Q 015171 322 SIFKYHGDLI--SFSSNALSLSETSLCFS 348 (412)
Q Consensus 322 ~~l~~~~~~~--~~l~~~~~L~~l~i~~~ 348 (412)
+.|.+.++.. ..+...++|++|.+..+
T Consensus 321 ~~L~L~~N~i~~~~~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 321 ENLYLDHNSIVTLKLSTHHTLKNLTLSHN 349 (390)
T ss_dssp SEEECCSSCCCCCCCCTTCCCSEEECCSS
T ss_pred CEEECCCCccceeCchhhccCCEEEcCCC
Confidence 5555555443 23444555666666444
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.36 E-value=1.3e-12 Score=131.66 Aligned_cols=230 Identities=20% Similarity=0.172 Sum_probs=165.8
Q ss_pred CceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++.+++..+. ...++.. +..+++|++|+++++.+... .....+++|++|+++++.+..... ..+..+++|++|+
T Consensus 255 ~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHY--FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCC--CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEE
T ss_pred ceeEEEeecCc--cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEE
Confidence 45555555432 2344443 66789999999999877543 556789999999999998743222 2357899999999
Q ss_pred eeccCCccee---eccCCCCccEEEEeeCCCCceEE------EecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeecc
Q 015171 193 IRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFL 262 (412)
Q Consensus 193 l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~ 262 (412)
+++|.....+ .+..+++|+.|+++++ .+..+. ..+++|++|+++++.... ....+..+++|++|+++++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9998654333 2556799999999987 333333 156899999999886221 1235678899999999999
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc------eeeccCCCeeeEEEeccee--
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI------QVEIETPNLSIFKYHGDLI-- 331 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~------~~~~~~~~L~~l~~~~~~~-- 331 (412)
.+........+..+++|+.|+++++......+ ...++|+.|++++|.... .....+++|+.|.+.++..
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 87764334446788999999999975433322 257899999999997543 1234578899999988765
Q ss_pred ---eecccccccceEEEEEe
Q 015171 332 ---SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ---~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.++.+
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSS
T ss_pred cChhhhccccCCCEEECCCC
Confidence 35678899999999766
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=131.09 Aligned_cols=226 Identities=17% Similarity=0.132 Sum_probs=138.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.+++..+.. ..+|..+..+ +|++|++++|.+...+. ..+++|+.|++.++....... ...+|+|++|++
T Consensus 282 ~~L~~L~l~~~~l--~~l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~~L~~L~l 354 (570)
T 2z63_A 282 TNVSSFSLVSVTI--ERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDL 354 (570)
T ss_dssp TTCSEEEEESCEE--CSCCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCC---CCBCTTCCEEEC
T ss_pred CcccEEEecCccc--hhhhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccc---cccCCCCCEEeC
Confidence 4666676665432 2466666666 77777777776653222 467777777777766521111 156777888888
Q ss_pred eccCCcce----eeccCCCCccEEEEeeCCCCceE---EEecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeecccc
Q 015171 194 RSCEGLES----LDLVNLSNLKEIILVNTSDIKRV---EIKTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 194 ~~c~~~~~----~~i~~l~~L~~L~i~~c~~l~~~---~~~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~ 264 (412)
++|..... ..+..+++|+.|++++| .+..+ ...+++|++|+++++.... ....+..+++|++|+++++.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 77754321 12345677888888776 22222 2256778888887765211 112456778888888887776
Q ss_pred chHHHHHhhcCCCCccEEeccccccc-cccc---ccccccceEEEecCcccceee---ccCCCeeeEEEeccee-----e
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKL-TSVR---ISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI-----S 332 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~---~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~-----~ 332 (412)
... ....+..+++|+.|++++|... ..++ ..+++|+.|++++|......+ ..+++|+.+.+.++.. .
T Consensus 434 ~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 434 RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp EEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 543 2334566788888888876533 1232 255778888888875532212 3456788888777654 3
Q ss_pred ecccccccceEEEEEe
Q 015171 333 FSSNALSLSETSLCFS 348 (412)
Q Consensus 333 ~l~~~~~L~~l~i~~~ 348 (412)
.+.++++|+++.+..+
T Consensus 513 ~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HhhcccCCcEEEecCC
Confidence 4567788888888665
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.34 E-value=1.9e-12 Score=129.51 Aligned_cols=213 Identities=13% Similarity=0.123 Sum_probs=158.6
Q ss_pred cCCccccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCC
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLS 208 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~ 208 (412)
..|..+..+++|++|+++++.+... .....+ +|++|+++++.+. .+. ...+++|++|.+.++..........++
T Consensus 273 ~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~--~l~--~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG--QFP--TLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp CSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS--SCC--BCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc--ccC--cccccccCEEeCcCCccccccccccCC
Confidence 4556667789999999999877543 445566 9999999998874 121 147899999999998766555445679
Q ss_pred CccEEEEeeCCCCceEE------EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 209 NLKEIILVNTSDIKRVE------IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 209 ~L~~L~i~~c~~l~~~~------~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
+|+.|++++| .+..+. ..+++|++|+++++........+..+++|++|+++++.+........+..+++|+.|
T Consensus 348 ~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 426 (570)
T 2z63_A 348 SLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426 (570)
T ss_dssp TCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred CCCEEeCcCC-ccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence 9999999987 333332 156899999999987444444588899999999999887663333456788999999
Q ss_pred eccccccccccc---ccccccceEEEecCccc-cee---eccCCCeeeEEEeccee-----eecccccccceEEEEEe
Q 015171 283 SMTKCHKLTSVR---ISSPCLKTLILECCDKL-IQV---EIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 283 ~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l-~~~---~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
++++|......+ ..+++|+.|++++|... ..+ ...+++|+.|.+.++.. ..+.++++|++|.+..+
T Consensus 427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 999985443333 35789999999999754 222 34678899999988765 35678899999999765
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.34 E-value=3.2e-12 Score=124.15 Aligned_cols=239 Identities=14% Similarity=0.097 Sum_probs=170.1
Q ss_pred CCceeEEEEEecCCCCCChhhHHHHHHHHHhCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcc
Q 015171 83 ISIKKFSLELDLINSPENASLAGRCLGLAIESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFS 162 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 162 (412)
..++.+.++..... . + .....+++++|+++.+.... +| +..+++|++|+++++.+...+ ...+++
T Consensus 64 ~~L~~L~Ls~n~l~---~---~----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~l~-~~~l~~ 128 (457)
T 3bz5_A 64 TGLTKLICTSNNIT---T---L----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTKLD-VSQNPL 128 (457)
T ss_dssp TTCSEEECCSSCCS---C---C----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSCCC-CTTCTT
T ss_pred CCCCEEEccCCcCC---e---E----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCeec-CCCCCc
Confidence 56777776644321 1 1 11223589999998855433 33 678899999999999876543 788999
Q ss_pred cceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeec
Q 015171 163 LRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYL 241 (412)
Q Consensus 163 L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~ 241 (412)
|+.|+++++.++.- . +..+++|++|++++|.....+.+..+++|+.|+++++ .+..+.+ .+++|+.|+++++..
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcC
Confidence 99999999988432 1 6789999999999998777777777899999999988 3333333 578999999998873
Q ss_pred cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc-cccc----------ccceEEEecCcc
Q 015171 242 FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-ISSP----------CLKTLILECCDK 310 (412)
Q Consensus 242 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~----------~L~~L~l~~c~~ 310 (412)
... .++.+++|+.|+++++.+.. ++ +..+++|+.|+++++. ++.++ ..++ +|+.|++++|..
T Consensus 204 ~~~--~l~~l~~L~~L~Ls~N~l~~--ip--~~~l~~L~~L~l~~N~-l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~ 276 (457)
T 3bz5_A 204 TKL--DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNP-LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ 276 (457)
T ss_dssp SCC--CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSC-CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred Cee--ccccCCCCCEEECcCCcccc--cC--ccccCCCCEEEeeCCc-CCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence 332 47889999999999999887 33 6678999999999853 22222 2334 455666666665
Q ss_pred cceeec-cCCCeeeEEEeccee-------------eecccccccceEEEEEe
Q 015171 311 LIQVEI-ETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 311 l~~~~~-~~~~L~~l~~~~~~~-------------~~l~~~~~L~~l~i~~~ 348 (412)
...++. .+++|+.+.+.++.. .-+.+.++|+.|.+..+
T Consensus 277 ~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N 328 (457)
T 3bz5_A 277 LIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT 328 (457)
T ss_dssp CCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC
T ss_pred CCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC
Confidence 554443 458899998877643 12344567777777544
No 29
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.34 E-value=4.2e-12 Score=120.87 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=163.9
Q ss_pred CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCCCC--CccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSE--NVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .+| ..+..+++|++|+++++.+...+. +..+++|++|+++++.+.... ...+..+++|++
T Consensus 93 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~ 169 (390)
T 3o6n_A 93 HTIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCE
T ss_pred CCcCEEECCCCCCC--cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCE
Confidence 58999999875432 344 446789999999999998765432 578999999999998774221 123578899999
Q ss_pred EEeeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 191 LEIRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 191 L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
|++++|.. ..+.+..+++|+.|+++++ .+..+. ..++|++|+++++..... .....++|+.|+++++.+.+.
T Consensus 170 L~l~~n~l-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~l~~~--- 241 (390)
T 3o6n_A 170 LQLSSNRL-THVDLSLIPSLFHANVSYN-LLSTLA-IPIAVEELDASHNSINVV--RGPVNVELTILKLQHNNLTDT--- 241 (390)
T ss_dssp EECCSSCC-SBCCGGGCTTCSEEECCSS-CCSEEE-CCSSCSEEECCSSCCCEE--ECCCCSSCCEEECCSSCCCCC---
T ss_pred EECCCCcC-Cccccccccccceeecccc-cccccC-CCCcceEEECCCCeeeec--cccccccccEEECCCCCCccc---
Confidence 99998854 3345666799999999887 444443 356899999998873332 224468999999999988773
Q ss_pred HhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLS 341 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~ 341 (412)
..+..+++|+.|+++++......+ ...++|+.|+++++..-. ......|+|+.|.+.++.. ..+..+++|+
T Consensus 242 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~ 321 (390)
T 3o6n_A 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE 321 (390)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence 346789999999999974332222 256889999999986432 1223578999999988765 3455678999
Q ss_pred eEEEEEe
Q 015171 342 ETSLCFS 348 (412)
Q Consensus 342 ~l~i~~~ 348 (412)
+|.+..+
T Consensus 322 ~L~L~~N 328 (390)
T 3o6n_A 322 NLYLDHN 328 (390)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999766
No 30
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.34 E-value=6.8e-12 Score=125.87 Aligned_cols=210 Identities=17% Similarity=0.043 Sum_probs=125.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .+|. .+++|++|+|++|.+...+. .+++|++|+++++.++. +-...++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-----l~~~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-----LPALPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-----CCCCCTTCCEEEC
T ss_pred CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-----CCCCCCCcCEEEC
Confidence 57888888765432 4555 45778888888877654333 67888888888776622 1114567788877
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCC--------------------C
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCG--------------------N 253 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~--------------------~ 253 (412)
++|... .+.. .+++|+.|++++| .+..++...++|+.|.++++....++ ..++ +
T Consensus 129 ~~N~l~-~lp~-~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~~~~ 202 (622)
T 3g06_A 129 FGNQLT-SLPV-LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTLPSE 202 (622)
T ss_dssp CSSCCS-CCCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CCCCCC-cCCC-CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCccch
Confidence 776432 2211 1367777777766 22222222344445444444311111 2234 4
Q ss_pred CcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceeeccCCCeeeEEEeccee--
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVEIETPNLSIFKYHGDLI-- 331 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~~~~~~-- 331 (412)
|+.|+++++.+.. +...+++|+.|+++++ .++.++..+++|+.|++++|. +..++...++|+.|.+.++..
T Consensus 203 L~~L~L~~N~l~~-----l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 203 LYKLWAYNNRLTS-----LPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CCEEECCSSCCSS-----CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCCS
T ss_pred hhEEECcCCcccc-----cCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCCC-CCcCCcccccCcEEeCCCCCCCc
Confidence 4444444444332 1123467777777765 445566666788888888873 444555677888888877765
Q ss_pred --eecccccccceEEEEEe
Q 015171 332 --SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 --~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|+.|.++.+
T Consensus 276 lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 276 LPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp CCGGGGGSCTTCEEECCSC
T ss_pred CCHHHhhccccCEEEecCC
Confidence 45677889999999766
No 31
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.33 E-value=3e-12 Score=119.04 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=117.4
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... ...|..+..+++|++|+++++.+...+. ..+++|++|+++++.+.... ...+..+++|++|++
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 152 (330)
T 1xku_A 76 KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVEL 152 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccC-HhHhcCCccccEEEC
Confidence 47777777764322 1225556677888888888776643222 22367888888777663222 223567888888888
Q ss_pred eccCCcc----eeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchH
Q 015171 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 194 ~~c~~~~----~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++.... ...+..+++|+.|+++++ .+..++. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus 153 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 231 (330)
T 1xku_A 153 GTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231 (330)
T ss_dssp CSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence 8775421 113444678888888776 2222221 236788888877762221 23466778888888888776652
Q ss_pred HHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcc
Q 015171 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (412)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~ 310 (412)
. ...+..+++|+.|+++++. +..++. ..++|+.|+++++..
T Consensus 232 ~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 232 D-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp C-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCC
T ss_pred C-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcC
Confidence 1 2235567888888888763 334433 456788888887654
No 32
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=2.3e-12 Score=124.68 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=75.8
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
+++.|+++.+.... ..+..+.++++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|++|+
T Consensus 65 ~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 65 NTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELW 142 (440)
T ss_dssp TCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEE
T ss_pred CCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceee
Confidence 45555555432211 1122344555566666655544322 23445555666666555442110 11234455566666
Q ss_pred eeccCCcce--eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 193 IRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 193 l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
++++..... ..+..+++|+.|++.+|..+..+.. .+++|++|+++++....++ .+..+++|+.|+++++.+..
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence 555532211 1123345555555555544433322 2445555555555422111 24445555555555555443
Q ss_pred HHHHHhhcCCCCccEEecccc
Q 015171 267 EWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c 287 (412)
. ....+..+++|+.|+++++
T Consensus 222 ~-~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 222 I-RPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp E-CTTTTTTCTTCCEEECTTC
T ss_pred c-ChhhhccCccCCEEECCCC
Confidence 1 1223344555555555553
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.8e-12 Score=126.73 Aligned_cols=229 Identities=17% Similarity=0.124 Sum_probs=141.0
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.+.. ..+|.. +..+++|++|+++++.+... ..+..+++|+.|+++++.+..... ..+..+++|++
T Consensus 80 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 156 (477)
T 2id5_A 80 FNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQ 156 (477)
T ss_dssp TTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-TSSTTCTTCCE
T ss_pred ccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-hhccCCCCCCE
Confidence 4788888876432 355554 45678888888888765432 456678888888888766532111 12456788888
Q ss_pred EEeeccCCcce--eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|..... -.+..+++|+.|++.++ .+..+. ..+++|+.|+++++. ............+|++|+++++.
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 235 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc
Confidence 88887744321 12445678888888776 222221 145778888887765 11112222334578888888777
Q ss_pred cchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI----- 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~----- 331 (412)
+... ....+..+++|+.|+++++. +..+. ...++|+.|+++++..... ....+++|+.|.+.++..
T Consensus 236 l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 313 (477)
T 2id5_A 236 LTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313 (477)
T ss_dssp CCSC-CHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred cccc-CHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence 6642 12335667888888888753 22222 2456788888877754321 123456777777776654
Q ss_pred eecccccccceEEEEEe
Q 015171 332 SFSSNALSLSETSLCFS 348 (412)
Q Consensus 332 ~~l~~~~~L~~l~i~~~ 348 (412)
..+.++++|++|.+..+
T Consensus 314 ~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 314 SVFHSVGNLETLILDSN 330 (477)
T ss_dssp GGBSCGGGCCEEECCSS
T ss_pred hHcCCCcccCEEEccCC
Confidence 34567788888888666
No 34
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.32 E-value=7.7e-13 Score=122.31 Aligned_cols=194 Identities=20% Similarity=0.153 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHh--CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHH
Q 015171 102 SLAGRCLGLAIE--SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAI 178 (412)
Q Consensus 102 ~~~~~~l~~~~~--~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l 178 (412)
..+...+..... +++++|+++.+... .++ ..+..+++|++|++++|.+........+++|++|+++++.++.
T Consensus 20 ~~l~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~--- 94 (317)
T 3o53_A 20 SSLKQALASLRQSAWNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--- 94 (317)
T ss_dssp TTHHHHHHHHHTTGGGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE---
T ss_pred cchhhhHHHHhccCCCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc---
Confidence 344444444333 37888888764322 233 3566778888888888766433336677788888887776632
Q ss_pred HHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC--CCCceEEE-ecCcccEEEeeeeeccceE-Eec-cCCCC
Q 015171 179 ASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFPIE-VNV-SSCGN 253 (412)
Q Consensus 179 ~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~-~~p~L~~L~l~~~~~~~~~-~~~-~~~~~ 253 (412)
+..++.|++|.+++|... .+....+++|+.|+++++ ..+....+ .+++|++|+++++...... ..+ ..+++
T Consensus 95 ---l~~~~~L~~L~l~~n~l~-~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp ---EEECTTCCEEECCSSCCS-EEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ---ccCCCCcCEEECCCCccC-CcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 223477777777776432 223333566777777666 12111111 3456666666665522111 112 34566
Q ss_pred CcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecC
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECC 308 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c 308 (412)
|++|+++++.+... .. ...+++|+.|+++++. ++.++ ...++|+.|+++++
T Consensus 171 L~~L~L~~N~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 171 LEHLNLQYNFIYDV--KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCEEECTTSCCCEE--EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred CCEEECCCCcCccc--cc-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC
Confidence 66666666665442 11 1235666666666542 22221 13455666666655
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=1e-12 Score=121.19 Aligned_cols=212 Identities=11% Similarity=0.078 Sum_probs=148.1
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeec--CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQ--QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
.+.++.|+++.+......+|..+.++++|++|+++++.+. .+.....+++|++|+++++.+... +...+..+++|++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVG 153 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCe
Confidence 3589999999523333467888899999999999999775 335578899999999999887422 2223567899999
Q ss_pred EEeeccCCccee--eccCCC-CccEEEEeeCCCCc-eEE--EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLS-NLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~-~L~~L~i~~c~~l~-~~~--~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|.....+ .+..++ +|+.|+++++. +. .++ +...+|+.|+++++. .......+..+++|+.|+++++.
T Consensus 154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 232 (313)
T 1ogq_A 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred EECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence 999998754332 344555 89999998871 11 111 111239999999887 22234456789999999999988
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeec--cCCCeeeEEEec
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEI--ETPNLSIFKYHG 328 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~--~~~~L~~l~~~~ 328 (412)
+... +.. +..+++|+.|+++++.....++. ..++|+.|+++++.....++. ..++|+.+.+.+
T Consensus 233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 8653 222 56789999999998754434443 567899999999865433332 344555555544
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.31 E-value=9.2e-13 Score=129.05 Aligned_cols=96 Identities=24% Similarity=0.157 Sum_probs=46.9
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+++.|+++.+.... ..|..+..+++|++|+|++|.+........+++|+.|+|+++.++. +...|+|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECC
T ss_pred CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECc
Confidence 56666666533221 1223455566666666666654332225556666666666655421 1123556666665
Q ss_pred ccCCcceeeccCCCCccEEEEeeC
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
+|.... +....+++|+.|++++|
T Consensus 108 ~N~l~~-~~~~~l~~L~~L~L~~N 130 (487)
T 3oja_A 108 NNNISR-VSCSRGQGKKNIYLANN 130 (487)
T ss_dssp SSCCCC-EEECCCSSCEEEECCSS
T ss_pred CCcCCC-CCccccCCCCEEECCCC
Confidence 553322 11223455555555554
No 37
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=3e-12 Score=124.38 Aligned_cols=192 Identities=15% Similarity=0.046 Sum_probs=112.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++++.|+++.+... ...|..+.++++|++|+|+++.+... ..+..+++|++|+|+++.++.-. ...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEE
Confidence 46777777664322 12234456677777887777755322 34566777777777777663111 1224567777777
Q ss_pred EeeccCCccee--eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccc
Q 015171 192 EIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 192 ~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
++++|...... .+..+++|+.|++.+|..+..+.. .+++|++|+++++....+ ..+..+++|+.|+++++.+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCc
Confidence 77777533111 234467777777777655555542 356777777777662222 23566677777777777665
Q ss_pred hHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCc
Q 015171 266 DEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCD 309 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~ 309 (412)
.. ....+..+++|+.|+++++......+ ...++|+.|+++++.
T Consensus 232 ~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 232 EI-RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp EE-CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cc-CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 52 23345567777777777653221111 234667777777663
No 38
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.31 E-value=3.2e-12 Score=124.17 Aligned_cols=230 Identities=18% Similarity=0.133 Sum_probs=160.6
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. +++++|+|+++.+... ..+..+++|+.|+|+++.+..... ..+.++++|++|++++|......
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChh
Confidence 3445665443 6899999999876433 567889999999999987743221 23567999999999998643211
Q ss_pred eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeecc-ceE-EeccCCCCCcEEEeeccccchHHHHHhhcCC
Q 015171 203 DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF-PIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKL 276 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~-~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (412)
.+..+++|+.|+++++ .+..+.. .+++|++|+++++... .+. ..+..+++|+.|+++++.+.. ++ .+..+
T Consensus 142 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l 217 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPL 217 (452)
T ss_dssp TSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTC
T ss_pred hhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-ccccc
Confidence 2445789999999987 3444432 4689999999885521 111 136789999999999998876 23 25678
Q ss_pred CCccEEeccccccccccc---ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----eecccccccceEEE
Q 015171 277 PLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSL 345 (412)
Q Consensus 277 ~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i 345 (412)
++|+.|+++++......+ ...++|+.|+++++..... ....+++|+.|.+.++.. ..+..+++|+.|.+
T Consensus 218 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEEC
T ss_pred ccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEc
Confidence 999999999864322222 2567899999999865422 223568899999988765 45677899999999
Q ss_pred EEeccchh-hHHHHHHHHH
Q 015171 346 CFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 346 ~~~~~~~~-~~~~~~~~~~ 363 (412)
..+...|. ...|+...++
T Consensus 298 ~~Np~~CdC~~~~l~~~l~ 316 (452)
T 3zyi_A 298 HHNPWNCDCDILWLAWWLR 316 (452)
T ss_dssp CSSCEECSTTTHHHHHHHH
T ss_pred cCCCcCCCCCchHHHHHHH
Confidence 87743332 3345544443
No 39
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.31 E-value=3.7e-12 Score=117.22 Aligned_cols=187 Identities=19% Similarity=0.162 Sum_probs=129.3
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.+++++|++..+... .+| .+..+++|++|++++|.+...+....+++|+.|+++++.+.+- . -+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT--TIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCcc--Cch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEE
Confidence 348888888765432 344 4677899999999998876655578899999999999888332 1 267789999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
+++|.......+..+++|+.|++++| ..+.. ...+++|+.|+++++...... .+..+++|+.|+++++.+... .
T Consensus 114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~ 189 (308)
T 1h6u_A 114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI--S 189 (308)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-hhcCCCCCCEEECCCCccCcC--h
Confidence 99886543334666788999999887 22222 125678888888887622222 267788888888888877652 2
Q ss_pred HhhcCCCCccEEeccccccccccc-ccccccceEEEecCcc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSVR-ISSPCLKTLILECCDK 310 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~L~~L~l~~c~~ 310 (412)
. +..+++|+.|+++++......+ ..+++|+.|++++++.
T Consensus 190 ~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 190 P-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp G-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred h-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 2 5677888888888863221111 2457788888877654
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.31 E-value=1.8e-12 Score=125.92 Aligned_cols=233 Identities=15% Similarity=0.093 Sum_probs=142.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEEeCHHHHH-HHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVCADDQAIA-SLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~p~Le~ 190 (412)
++++.|+++.+.....--+..+..+++|++|+++++.+.. +..+..+++|++|+++++.++..... ..+..+++|++
T Consensus 54 ~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~ 133 (455)
T 3v47_A 54 QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133 (455)
T ss_dssp TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCE
T ss_pred ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCE
Confidence 4788888877543222224456778889999998886542 24567788999999988877543332 23567889999
Q ss_pred EEeeccCCccee--e-ccCCCCccEEEEeeCCCCceEE---E-----------------------------------ecC
Q 015171 191 LEIRSCEGLESL--D-LVNLSNLKEIILVNTSDIKRVE---I-----------------------------------KTS 229 (412)
Q Consensus 191 L~l~~c~~~~~~--~-i~~l~~L~~L~i~~c~~l~~~~---~-----------------------------------~~p 229 (412)
|++++|...... . +..+++|+.|+++++. +..+. + ..+
T Consensus 134 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp EECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC
T ss_pred EECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccc
Confidence 999888654321 1 4557889999988771 11100 0 114
Q ss_pred cccEEEeeeeeccc-e--------------EEecc-------------------------CCCCCcEEEeeccccchHHH
Q 015171 230 NVNALAIHQTYLFP-I--------------EVNVS-------------------------SCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 230 ~L~~L~l~~~~~~~-~--------------~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~ 269 (412)
+|++|+++++.... . ...+. ..++|+.|+++++.+... .
T Consensus 213 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~ 291 (455)
T 3v47_A 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-L 291 (455)
T ss_dssp EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-C
T ss_pred eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc-c
Confidence 56666665553100 0 00000 124566666666655542 2
Q ss_pred HHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccce---eeccCCCeeeEEEeccee-----eeccccc
Q 015171 270 CNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLIQ---VEIETPNLSIFKYHGDLI-----SFSSNAL 338 (412)
Q Consensus 270 ~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~ 338 (412)
...+..+++|+.|+++++......+ ...++|+.|++++|..-.. ....+++|+.|.+.++.. ..+.+++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 3335667788888887754322222 2457888888888754321 123467888888877655 3566788
Q ss_pred ccceEEEEEe
Q 015171 339 SLSETSLCFS 348 (412)
Q Consensus 339 ~L~~l~i~~~ 348 (412)
+|++|.+..+
T Consensus 372 ~L~~L~L~~N 381 (455)
T 3v47_A 372 NLKELALDTN 381 (455)
T ss_dssp TCCEEECCSS
T ss_pred cccEEECCCC
Confidence 8999988665
No 41
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.31 E-value=2.2e-12 Score=130.67 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=103.4
Q ss_pred CCceEEEEEeCCCccc----------------cCCcccc--CCCCeeEEEEeceeecC--CCCCccCcccceeEeeeEE-
Q 015171 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQ--PSENVKLFSLRKLALREVC- 172 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~--~~~~~~l~~L~~L~L~~~~- 172 (412)
+++++|+++.+..... .+|..+. ++++|++|++++|.+.. +.....+++|++|+++++.
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 5899999998543220 1899988 99999999999997643 3567889999999999998
Q ss_pred eCHHHHHHHH------cCCCCccEEEeeccCCccee---eccCCCCccEEEEeeCCCCc-eEE--EecCcccEEEeeeee
Q 015171 173 ADDQAIASLI------SGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIK-RVE--IKTSNVNALAIHQTY 240 (412)
Q Consensus 173 ~~~~~l~~l~------~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~-~~~--~~~p~L~~L~l~~~~ 240 (412)
++...+..-+ ..+++|++|++++|....-. .+..+++|+.|+++++. +. .++ ...++|+.|+++++.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCCCCCEEECCCCc
Confidence 6652232222 24589999999988654211 35567889999998872 22 221 245677777777766
Q ss_pred ccceEEeccCCCC-CcEEEeeccccc
Q 015171 241 LFPIEVNVSSCGN-LKCLKFDFLPIE 265 (412)
Q Consensus 241 ~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (412)
...++..+..+++ |++|+++++.+.
T Consensus 365 l~~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 365 ITEIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp EEECCTTSEEECTTCCEEECCSSCCS
T ss_pred cccccHhhhhhcccCcEEEccCCcCc
Confidence 3333334555666 777777666655
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=7.4e-12 Score=125.95 Aligned_cols=209 Identities=17% Similarity=0.132 Sum_probs=112.0
Q ss_pred cCCCCeeEEEEeceeecCCC--CCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L 213 (412)
..+++|++|+|++|.+...+ .+..+++|++|+|+++.+.... ...+..+++|+.|++++|.. ..+.+..+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCC-SBCCGGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCC-CCcChhhhhhhhhh
Confidence 44555555555555443321 1345555555555555442111 11134455555555555432 11222233444444
Q ss_pred EEeeCC------------------CCceEEE-ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhc
Q 015171 214 ILVNTS------------------DIKRVEI-KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGIS 274 (412)
Q Consensus 214 ~i~~c~------------------~l~~~~~-~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (412)
+++++. .+..+.. ..++|+.|+++++.... ...+..+++|+.|+++++.+... .+..+.
T Consensus 198 ~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~ 275 (597)
T 3oja_B 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKI-MYHPFV 275 (597)
T ss_dssp ECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEE-ESGGGT
T ss_pred hcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCC-CHHHhc
Confidence 443330 1111111 12345555555554211 13456677888888887776653 233456
Q ss_pred CCCCccEEecccccccccccc---cccccceEEEecCcccc--eeeccCCCeeeEEEeccee--eecccccccceEEEEE
Q 015171 275 KLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI--SFSSNALSLSETSLCF 347 (412)
Q Consensus 275 ~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~--~~l~~~~~L~~l~i~~ 347 (412)
.+++|+.|+++++. +..++. .+++|+.|++++|.... .....+++|+.|.+.++.. ..+..+++|+.|.++.
T Consensus 276 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 276 KMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 354 (597)
T ss_dssp TCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCS
T ss_pred CccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeC
Confidence 67888888888753 233332 46788888888875531 1113467888888877665 4466778899999876
Q ss_pred ec
Q 015171 348 SS 349 (412)
Q Consensus 348 ~~ 349 (412)
+.
T Consensus 355 N~ 356 (597)
T 3oja_B 355 ND 356 (597)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 43
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=124.29 Aligned_cols=122 Identities=12% Similarity=0.092 Sum_probs=73.5
Q ss_pred ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccch-HHHHHhhcCCCCccEEecccccccccccc----ccccc
Q 015171 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
.+++|++|+++++. ....+..+..+++|+.|+++++.+.. ..++..+..+++|+.|+++++.....++. ..++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 45778888887776 22223456778888899998888775 22445567788888888888644332332 34667
Q ss_pred ceEEEecCcccceeeccC-CCeeeEEEeccee----eecccccccceEEEEEe
Q 015171 301 KTLILECCDKLIQVEIET-PNLSIFKYHGDLI----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 301 ~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~ 348 (412)
+.|++++|......+... ++|+.|.+.++.. ..+..+++|++|.+..+
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence 777777765433222222 4566666655443 22235555666655443
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.30 E-value=4.2e-12 Score=116.86 Aligned_cols=185 Identities=19% Similarity=0.169 Sum_probs=135.6
Q ss_pred CCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEe
Q 015171 137 YVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILV 216 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~ 216 (412)
.+++|++|+++++.+...+....+++|+.|+++++.+.+-. . +..+++|++|++++|.....-.+..+++|+.|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 46789999999998876667788999999999999884322 1 68899999999999864333345668999999999
Q ss_pred eC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc
Q 015171 217 NT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (412)
Q Consensus 217 ~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 294 (412)
+| ..+.. ...+++|++|+++++...... .+..+++|+.|+++++.+.+ +.. +..+++|+.|+++++. ++.++
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~ 189 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDIS 189 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCCG
T ss_pred CCCCCCchh-hcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcCh
Confidence 88 22222 125689999999988732221 27788999999999998876 233 6788999999999863 23332
Q ss_pred --ccccccceEEEecCcccce-eeccCCCeeeEEEecce
Q 015171 295 --ISSPCLKTLILECCDKLIQ-VEIETPNLSIFKYHGDL 330 (412)
Q Consensus 295 --~~~~~L~~L~l~~c~~l~~-~~~~~~~L~~l~~~~~~ 330 (412)
..+++|+.|++++|..-.. -...+++|+.+.+.+..
T Consensus 190 ~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 3567899999998865321 12355677777776653
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.29 E-value=2.3e-13 Score=132.47 Aligned_cols=257 Identities=14% Similarity=0.072 Sum_probs=138.3
Q ss_pred CceEEEEEeCCCcc---ccCCccccCCCCeeEEEEeceeecCC-------CCCccCcccceeEeeeEEeCHHH---HHHH
Q 015171 115 EVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-------SENVKLFSLRKLALREVCADDQA---IASL 181 (412)
Q Consensus 115 ~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-------~~~~~l~~L~~L~L~~~~~~~~~---l~~l 181 (412)
++++|+++.+.... ..+|..+..+++|++|+++++.+... ......++|++|+++++.+++.. +...
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 46666666543221 23445555666777777766654321 00122445777777766664332 3344
Q ss_pred HcCCCCccEEEeeccCCcce-e-ecc-----CCCCccEEEEeeCCCCce-----EE---EecCcccEEEeeeeeccce--
Q 015171 182 ISGCPLIEYLEIRSCEGLES-L-DLV-----NLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFPI-- 244 (412)
Q Consensus 182 ~~~~p~Le~L~l~~c~~~~~-~-~i~-----~l~~L~~L~i~~c~~l~~-----~~---~~~p~L~~L~l~~~~~~~~-- 244 (412)
+..+++|++|++++|..... . .+. ..++|+.|++++| .+.. +. ..+++|++|+++++.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 55567777777776653210 0 010 1357777777776 1111 11 1357788888877651110
Q ss_pred ----EEeccCCCCCcEEEeeccccchHH---HHHhhcCCCCccEEecccccccc----ccc----ccccccceEEEecCc
Q 015171 245 ----EVNVSSCGNLKCLKFDFLPIEDEW---LCNGISKLPLLEYLSMTKCHKLT----SVR----ISSPCLKTLILECCD 309 (412)
Q Consensus 245 ----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~c~~l~----~l~----~~~~~L~~L~l~~c~ 309 (412)
......+++|++|+++++.+.... +...+..+++|++|+++++.... .+. ...++|++|++++|.
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 011224678888888877777644 34445567888888888753211 111 123578888888876
Q ss_pred ccce----e---eccCCCeeeEEEeccee-----e----ecc-cccccceEEEEEeccchhhHHHHHHHHHhhhhccccc
Q 015171 310 KLIQ----V---EIETPNLSIFKYHGDLI-----S----FSS-NALSLSETSLCFSSHLMVNIEWVVEYFEILAMFQKFS 372 (412)
Q Consensus 310 ~l~~----~---~~~~~~L~~l~~~~~~~-----~----~l~-~~~~L~~l~i~~~~~~~~~~~~~~~~~~~l~~l~~l~ 372 (412)
.-.. + ....++|+.+.+.++.. . .+. ..++|++|.+..+.-...+...+.+.+.....++.+.
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 4321 1 12347788888877644 1 111 1568888888655322223334555555555555554
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.29 E-value=3.6e-12 Score=123.33 Aligned_cols=228 Identities=18% Similarity=0.205 Sum_probs=126.9
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
...+|..+. ++++.|+|+++.+... ..+..+++|++|+|+++.+..... ..+.++++|++|++++|...... .
T Consensus 55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhH
Confidence 345555443 5677777777655322 445667777777777766632111 22456777777777776432111 2
Q ss_pred ccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccc-e-EEeccCCCCCcEEEeeccccchHHHHHhhcCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFP-I-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLP 277 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (412)
+..+++|+.|+++++ .+..+.. .+++|++|+++++.... + ...+..+++|++|+++++.+.. ++. +..++
T Consensus 132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~-~~~l~ 207 (440)
T 3zyj_A 132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPN-LTPLI 207 (440)
T ss_dssp SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CCC-CTTCS
T ss_pred hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--ccc-cCCCc
Confidence 344577777777766 2333321 35677777777643111 1 1135567777777777776654 222 45567
Q ss_pred CccEEecccccccccc-c---ccccccceEEEecCcccc---eeeccCCCeeeEEEeccee-----eecccccccceEEE
Q 015171 278 LLEYLSMTKCHKLTSV-R---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNALSLSETSL 345 (412)
Q Consensus 278 ~L~~L~l~~c~~l~~l-~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i 345 (412)
+|+.|+++++. ++.+ + ...++|+.|+++++..-. .....+++|+.|.+.++.. ..+.++++|+.|.+
T Consensus 208 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 208 KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp SCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred ccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 77777777752 2222 1 244667777777764422 1123456677777766544 34556677777777
Q ss_pred EEeccchh-hHHHHHHHHH
Q 015171 346 CFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 346 ~~~~~~~~-~~~~~~~~~~ 363 (412)
..+...|. ...|+...++
T Consensus 287 ~~Np~~CdC~l~~l~~~~~ 305 (440)
T 3zyj_A 287 HHNPWNCNCDILWLSWWIK 305 (440)
T ss_dssp CSSCEECSSTTHHHHHHHH
T ss_pred CCCCccCCCCchHHHHHHH
Confidence 66533232 3344444433
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.28 E-value=6e-13 Score=129.52 Aligned_cols=207 Identities=19% Similarity=0.145 Sum_probs=113.5
Q ss_pred CeeEEEEeceeecC------CCCCccCcccceeEeeeEEeCHHHHHHHHc----CCCCccEEEeeccCCcce----e--e
Q 015171 140 SLHVLELSYCKLQQ------PSENVKLFSLRKLALREVCADDQAIASLIS----GCPLIEYLEIRSCEGLES----L--D 203 (412)
Q Consensus 140 ~L~~L~L~~~~~~~------~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~----~~p~Le~L~l~~c~~~~~----~--~ 203 (412)
+|++|++++|.+.. +.....+++|++|+++++.+++.....+.. ..++|++|++++|..... + .
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 56666666665542 133445666677777666664444333222 245567777666643211 0 1
Q ss_pred ccCCCCccEEEEeeCCCCce-----EEE----ecCcccEEEeeeeeccc-----eEEeccCCCCCcEEEeeccccchHHH
Q 015171 204 LVNLSNLKEIILVNTSDIKR-----VEI----KTSNVNALAIHQTYLFP-----IEVNVSSCGNLKCLKFDFLPIEDEWL 269 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~-----~~~----~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~ 269 (412)
+..+++|+.|++++|. +.. +.. ..++|++|+++++.... +...+..+++|++|+++++.+.+...
T Consensus 166 l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHH
Confidence 2224677777776662 111 100 13477777777665211 12234556778888887777766443
Q ss_pred HH----hhcCCCCccEEeccccccccc-----ccc---cccccceEEEecCcccc----ee----eccCCCeeeEEEecc
Q 015171 270 CN----GISKLPLLEYLSMTKCHKLTS-----VRI---SSPCLKTLILECCDKLI----QV----EIETPNLSIFKYHGD 329 (412)
Q Consensus 270 ~~----~~~~~~~L~~L~l~~c~~l~~-----l~~---~~~~L~~L~l~~c~~l~----~~----~~~~~~L~~l~~~~~ 329 (412)
.. +...+++|++|++++|. ++. ++. ..++|++|+++++..-. .+ ....++|+.|.+.++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 32 22346778888887762 222 222 35678888887775421 11 112357788777765
Q ss_pred ee---------eecccccccceEEEEEe
Q 015171 330 LI---------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 330 ~~---------~~l~~~~~L~~l~i~~~ 348 (412)
.. ..+.+.++|++|.++.+
T Consensus 324 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 324 SFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp CCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 43 23445578888888655
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.2e-11 Score=124.47 Aligned_cols=208 Identities=15% Similarity=0.042 Sum_probs=146.9
Q ss_pred CCceEEEEEeCCCccccCCccc-cCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPEII-FYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~-~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.+.. ..+|..+ ..+++|++|++++|.+... ..+..+++|+.|+++++.++... +..+|.|+.
T Consensus 123 ~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~ 196 (597)
T 3oja_B 123 PLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH 196 (597)
T ss_dssp TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred CCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence 4788888887543 3667664 6789999999999877543 35678999999999998774322 345667777
Q ss_pred EEeeccCCc------------------ceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeecc-ceEEecc
Q 015171 191 LEIRSCEGL------------------ESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLF-PIEVNVS 249 (412)
Q Consensus 191 L~l~~c~~~------------------~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~-~~~~~~~ 249 (412)
|+++++... ..+.....++|+.|++++|. +.... ..+++|+.|+++++... ..+..+.
T Consensus 197 L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 197 ANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp EECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred hhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence 666655321 11111123689999999882 22211 25789999999998732 2234678
Q ss_pred CCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccceeeccCCCeeeEEE
Q 015171 250 SCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLIQVEIETPNLSIFKY 326 (412)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~~~~~~~~~L~~l~~ 326 (412)
.+++|+.|+++++.+.. ++.....+++|+.|+++++.. ..++. .+++|+.|++++|.....-...+++|+.+.+
T Consensus 276 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l 352 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTL 352 (597)
T ss_dssp TCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEEC
T ss_pred CccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEe
Confidence 89999999999998876 344456689999999999743 34433 5689999999998764333456788999999
Q ss_pred eccee
Q 015171 327 HGDLI 331 (412)
Q Consensus 327 ~~~~~ 331 (412)
.++..
T Consensus 353 ~~N~~ 357 (597)
T 3oja_B 353 SHNDW 357 (597)
T ss_dssp CSSCE
T ss_pred eCCCC
Confidence 88765
No 49
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=6.3e-12 Score=130.45 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=104.2
Q ss_pred CCceEEEEEeCCCccc----------------cCCcccc--CCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEE-
Q 015171 114 SEVKELVLVHWRSERR----------------NLPEIIF--YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC- 172 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~----------------~lp~~~~--~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~- 172 (412)
++++.|+++.+..... .+|..+. ++++|++|+|++|.+... .....+++|+.|+|+++.
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 5899999998553321 2888887 899999999999875433 557789999999999997
Q ss_pred eCH-H---HHHHH---HcCCCCccEEEeeccCCccee---eccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeee
Q 015171 173 ADD-Q---AIASL---ISGCPLIEYLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTY 240 (412)
Q Consensus 173 ~~~-~---~l~~l---~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~ 240 (412)
++. . .+..+ +..+|+|+.|++++|....-. .+..+++|+.|+++++. +..++ ..+++|+.|+++++.
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSC
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCc
Confidence 654 2 22222 246679999999988654211 25567888888888772 22222 145678888887776
Q ss_pred ccceEEeccCCCC-CcEEEeeccccc
Q 015171 241 LFPIEVNVSSCGN-LKCLKFDFLPIE 265 (412)
Q Consensus 241 ~~~~~~~~~~~~~-L~~L~l~~~~~~ 265 (412)
...++..+..+++ |+.|+++++.+.
T Consensus 607 l~~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 607 IEEIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp CSCCCTTSCEECTTCCEEECCSSCCC
T ss_pred cccchHHHhhccccCCEEECcCCCCC
Confidence 3344444566676 777777777655
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.23 E-value=1.5e-12 Score=119.71 Aligned_cols=210 Identities=17% Similarity=0.097 Sum_probs=143.8
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 188 (412)
+++++|+++.+... .+|.. +..+++|++|+++++.+... .....+++|++|+++++.+.. +..-+..+++|
T Consensus 28 ~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence 47888888875433 66665 46789999999998866422 334468899999999887631 11225678999
Q ss_pred cEEEeeccCCcce---eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeecc--ceEEeccCCCCCcEEEe
Q 015171 189 EYLEIRSCEGLES---LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLF--PIEVNVSSCGNLKCLKF 259 (412)
Q Consensus 189 e~L~l~~c~~~~~---~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l 259 (412)
++|+++++..... -.+..+++|+.|+++++. +..+. ..+++|++|+++++... ..+..+..+++|++|++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEEC
Confidence 9999988754321 134457899999998872 22111 14688999999888732 24456788999999999
Q ss_pred eccccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCccccee---eccC-CCeeeEEEecce
Q 015171 260 DFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQV---EIET-PNLSIFKYHGDL 330 (412)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~---~~~~-~~L~~l~~~~~~ 330 (412)
+++.+... ....+..+++|+.|+++++.. ..++ ...++|+.|+++++...... .... ++|+.+.+.+..
T Consensus 183 s~n~l~~~-~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 183 SQCQLEQL-SPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TTSCCCEE-CTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCcCCc-CHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99887763 234466789999999998642 2222 24678999999998654322 1234 478899887754
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=8.2e-12 Score=113.50 Aligned_cols=169 Identities=17% Similarity=0.110 Sum_probs=97.4
Q ss_pred CCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee---eccCCCCccE
Q 015171 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLKE 212 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~~ 212 (412)
.++|++|+++++.+... ..+..+++|++|+++++.++... ...+..+++|++|++++|..+..+ .+..+++|+.
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35778888877765432 34567778888888777653221 122456778888888877644333 2344677777
Q ss_pred EEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 213 IILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 213 L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
|+++++. +..+. ..+++|++|+++++...... ..+..+++|++|+++++.+... ....+..+++|+.|+++++
T Consensus 110 L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 110 LHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCccccCEEECCCC
Confidence 7777661 11111 13566777777766522211 1255677777777777766541 1223455677777777775
Q ss_pred cccccccc---cccccceEEEecCc
Q 015171 288 HKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 288 ~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
......+. ..++|+.|+++++.
T Consensus 188 ~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 188 RVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccCHhHccCcccccEeeCCCCc
Confidence 32222121 34567777776653
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.22 E-value=1.8e-10 Score=113.77 Aligned_cols=199 Identities=13% Similarity=0.018 Sum_probs=133.4
Q ss_pred ccCcccceeEeeeEEe--CHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCC--C-CceEEEecCccc
Q 015171 158 VKLFSLRKLALREVCA--DDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS--D-IKRVEIKTSNVN 232 (412)
Q Consensus 158 ~~l~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~--~-l~~~~~~~p~L~ 232 (412)
..+++|+.++++++.+ ....+..++. .++|+.|++++|..........+++|+.|++++|. . .......+++|+
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 351 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC
T ss_pred ccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC
Confidence 4556666666655544 2123333222 35688888888764332222457899999999882 1 111123678999
Q ss_pred EEEeeeeecc---ceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccc-cccceEEEecC
Q 015171 233 ALAIHQTYLF---PIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLILECC 308 (412)
Q Consensus 233 ~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~L~~L~l~~c 308 (412)
+|+++++... ..+..+..+++|+.|+++++.+........+..+++|+.|+++++.....++... ++|+.|++++|
T Consensus 352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N 431 (520)
T 2z7x_B 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431 (520)
T ss_dssp EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS
T ss_pred EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC
Confidence 9999988732 2234478899999999999998764333446678999999999986545554444 69999999998
Q ss_pred cccceee---ccCCCeeeEEEeccee-----eecccccccceEEEEEeccchh-hHHHH
Q 015171 309 DKLIQVE---IETPNLSIFKYHGDLI-----SFSSNALSLSETSLCFSSHLMV-NIEWV 358 (412)
Q Consensus 309 ~~l~~~~---~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~~~~~~~-~~~~~ 358 (412)
..- .++ ..+++|+.+.+.++.. ..+.++++|+++.+..+.-.|. ...|+
T Consensus 432 ~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 432 KIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 643 222 2678899999988765 2367789999999987743332 33444
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.22 E-value=2.3e-11 Score=127.29 Aligned_cols=96 Identities=11% Similarity=-0.049 Sum_probs=60.7
Q ss_pred CCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---ccccccceEEEecCcccc---eeeccCCCeeeEE
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFK 325 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~ 325 (412)
++|+.|+++++.+... ....+..+++|+.|+++++......+ ...++|++|+++++.... .....+++|+.+.
T Consensus 266 ~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp SCCCEEECTTCCCCEE-CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred CCccEEECCCCccccc-ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 5677777766665442 22335567778888887753222111 245678888888875422 2224567788888
Q ss_pred Eeccee-----eecccccccceEEEEEe
Q 015171 326 YHGDLI-----SFSSNALSLSETSLCFS 348 (412)
Q Consensus 326 ~~~~~~-----~~l~~~~~L~~l~i~~~ 348 (412)
+.++.. ..+.++++|+.|.+..+
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCC
Confidence 876654 35677889999999765
No 54
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.21 E-value=3.1e-11 Score=120.09 Aligned_cols=83 Identities=20% Similarity=0.106 Sum_probs=48.8
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecC---CCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQ---PSENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++.+.. ..+|+. +..+++|++|+++++.+.. +.....+++|++|+++++..........+..+++|+
T Consensus 74 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 74 GSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN 151 (549)
T ss_dssp TTCCEEECTTSCC--CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred ccCCEEECCCCcc--CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC
Confidence 3677777765432 234443 5667777777777776642 244567777777777776531111111245677777
Q ss_pred EEEeeccCC
Q 015171 190 YLEIRSCEG 198 (412)
Q Consensus 190 ~L~l~~c~~ 198 (412)
+|++++|..
T Consensus 152 ~L~L~~n~l 160 (549)
T 2z81_A 152 ELEIKALSL 160 (549)
T ss_dssp EEEEEETTC
T ss_pred eeeccCCcc
Confidence 777776643
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=1.1e-11 Score=121.34 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=141.1
Q ss_pred CCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 138 VESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 138 ~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
+++|++|+|+++.+... ..+..+++|++|+|+++.++... . +..+++|++|++++|.. ..+. ..++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~l-~~l~--~~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNYV-QELL--VGPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSEE-EEEE--ECTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCcC-CCCC--CCCCcCEEEC
Confidence 45899999999877654 35678899999999888773211 1 67789999999988843 2222 2378999999
Q ss_pred eeCCCCceEE-EecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 216 VNTSDIKRVE-IKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 216 ~~c~~l~~~~-~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++| .+..+. ..+++|+.|+++++. ....+..++.+++|+.|+++++.+.......+...+++|+.|+++++. ++.+
T Consensus 107 ~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~ 184 (487)
T 3oja_A 107 ANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV 184 (487)
T ss_dssp CSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred cCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc
Confidence 887 333333 356889999998887 222244567788999999998888764444444568899999998864 2232
Q ss_pred cc--cccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccceEEEEEec
Q 015171 294 RI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSS 349 (412)
Q Consensus 294 ~~--~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~~ 349 (412)
+. .+++|+.|+++++..-. .....+++|+.|.+.++.. ..+..+++|+.+.+..+.
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 185 KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence 22 46789999998876432 1123557788888877654 345567788888886653
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.20 E-value=6.8e-11 Score=123.70 Aligned_cols=233 Identities=14% Similarity=0.072 Sum_probs=130.5
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecC--CC--CCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQ--PS--ENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
++++.|+++.+... ...|..+.++++|++|+|++|.+.. +. ....+++|++|+|+++.+........+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 36777777653322 2235556667777777777776643 11 2566777777777777663322223356677777
Q ss_pred EEEeeccCCcc---------------eee-------------ccCCC------CccEEEEeeCC----------------
Q 015171 190 YLEIRSCEGLE---------------SLD-------------LVNLS------NLKEIILVNTS---------------- 219 (412)
Q Consensus 190 ~L~l~~c~~~~---------------~~~-------------i~~l~------~L~~L~i~~c~---------------- 219 (412)
+|++++|.... .+. +..++ +|+.|+++++.
T Consensus 152 ~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~ 231 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231 (844)
T ss_dssp EEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSC
T ss_pred EEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcc
Confidence 77777663211 000 01111 26666666551
Q ss_pred CCceEEEe-------------------------cCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhh
Q 015171 220 DIKRVEIK-------------------------TSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGI 273 (412)
Q Consensus 220 ~l~~~~~~-------------------------~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (412)
.+..+... .++|+.|+++++.... ....+..+++|+.|+++++.+... ....+
T Consensus 232 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~ 310 (844)
T 3j0a_A 232 QAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-ADEAF 310 (844)
T ss_dssp CBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-CTTTT
T ss_pred cccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-ChHHh
Confidence 01111111 2567777777665211 123467788888899888877653 22345
Q ss_pred cCCCCccEEeccccccccccc---ccccccceEEEecCcccc---eeeccCCCeeeEEEecceeeecccccccceEEEEE
Q 015171 274 SKLPLLEYLSMTKCHKLTSVR---ISSPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLISFSSNALSLSETSLCF 347 (412)
Q Consensus 274 ~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~~~l~~~~~L~~l~i~~ 347 (412)
..+++|+.|+++++......+ ...++|+.|+++++..-. .....+++|+.|.+.++....+...++|+++.+..
T Consensus 311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~ 390 (844)
T 3j0a_A 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390 (844)
T ss_dssp TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEES
T ss_pred cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCC
Confidence 677888888888763222111 255778888888774321 11234677888877776543333355666666654
Q ss_pred e
Q 015171 348 S 348 (412)
Q Consensus 348 ~ 348 (412)
+
T Consensus 391 N 391 (844)
T 3j0a_A 391 N 391 (844)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=1.7e-12 Score=123.37 Aligned_cols=216 Identities=19% Similarity=0.198 Sum_probs=136.7
Q ss_pred CCceEEEEEeCCCcc---ccCCccccCCCCeeEEEEeceeecCC-----CC-------CccCcccceeEeeeEEeCHH--
Q 015171 114 SEVKELVLVHWRSER---RNLPEIIFYVESLHVLELSYCKLQQP-----SE-------NVKLFSLRKLALREVCADDQ-- 176 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~-----~~-------~~~l~~L~~L~L~~~~~~~~-- 176 (412)
++++.|+++.+.... ..++..+..+++|++|+|++|..... .. ...+++|++|+|+++.+++.
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 579999888753221 12334466788999999988744321 11 25678999999999888543
Q ss_pred -HHHHHHcCCCCccEEEeeccCCcce----e--eccCC---------CCccEEEEeeCCCC-ceEE------EecCcccE
Q 015171 177 -AIASLISGCPLIEYLEIRSCEGLES----L--DLVNL---------SNLKEIILVNTSDI-KRVE------IKTSNVNA 233 (412)
Q Consensus 177 -~l~~l~~~~p~Le~L~l~~c~~~~~----~--~i~~l---------~~L~~L~i~~c~~l-~~~~------~~~p~L~~ 233 (412)
.+...+..+++|+.|++++|..... + .+..+ ++|+.|++++|.-- ..+. ..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 3445567889999999998864211 1 01122 78999998887211 1111 14678888
Q ss_pred EEeeeeeccc------eEEeccCCCCCcEEEeeccccch---HHHHHhhcCCCCccEEeccccccccc----ccc-----
Q 015171 234 LAIHQTYLFP------IEVNVSSCGNLKCLKFDFLPIED---EWLCNGISKLPLLEYLSMTKCHKLTS----VRI----- 295 (412)
Q Consensus 234 L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~L~l~~c~~l~~----l~~----- 295 (412)
|+++++.... ....+..+++|+.|+++++.+.+ ..+...+..+++|+.|++++|..... ++.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 8888876221 11145678888888888888764 23445567788888888888643221 122
Q ss_pred cccccceEEEecCcccc----eee----ccCCCeeeEEEecc
Q 015171 296 SSPCLKTLILECCDKLI----QVE----IETPNLSIFKYHGD 329 (412)
Q Consensus 296 ~~~~L~~L~l~~c~~l~----~~~----~~~~~L~~l~~~~~ 329 (412)
..++|+.|++++|..-. .++ ..+|+|+.+.+.++
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 26778888888876532 122 22466676666654
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=1.4e-11 Score=113.86 Aligned_cols=206 Identities=13% Similarity=0.087 Sum_probs=150.6
Q ss_pred CCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 137 YVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.+++|++|+++++.+... ..+..+++|++|+++++.+.... . +..+++|++|++++|.. ..+. ..++|+.|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l-~~l~--~~~~L~~L~ 105 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYV-QELL--VGPSIETLH 105 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEE-EEEE--ECTTCCEEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCcc-cccc--CCCCcCEEE
Confidence 467899999999987654 24678999999999998773211 1 67899999999998853 3222 348999999
Q ss_pred EeeCCCCceEEE-ecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccc
Q 015171 215 LVNTSDIKRVEI-KTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTS 292 (412)
Q Consensus 215 i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 292 (412)
++++ .+..+.. .+++|++|+++++.... ....+..+++|++|+++++.+.......+...+++|+.|+++++. ++.
T Consensus 106 l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~ 183 (317)
T 3o53_A 106 AANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD 183 (317)
T ss_dssp CCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred CCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence 9987 4444433 57899999999887222 234567789999999999988764444445578999999999864 333
Q ss_pred ccc--cccccceEEEecCcccc--eeeccCCCeeeEEEeccee----eecccccccceEEEEEecc
Q 015171 293 VRI--SSPCLKTLILECCDKLI--QVEIETPNLSIFKYHGDLI----SFSSNALSLSETSLCFSSH 350 (412)
Q Consensus 293 l~~--~~~~L~~L~l~~c~~l~--~~~~~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i~~~~~ 350 (412)
++. ..++|+.|++++|..-. ......++|+.+.+.++.. ..+..+++|+.+.+..+..
T Consensus 184 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCC
T ss_pred cccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCc
Confidence 322 47899999999986532 1123567899999888765 3456778999999976643
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.2e-10 Score=115.80 Aligned_cols=193 Identities=17% Similarity=0.102 Sum_probs=131.7
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
+.++.|+++.+... ...|..+..+++|++|+++++.+... ..+..+++|++|+++++.+..... ..+..+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS-SWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCH-HHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCH-HHhccCCCCcEE
Confidence 47899998875432 22345677899999999999876433 457789999999999988743222 235789999999
Q ss_pred EeeccCCcc-e--eeccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc
Q 015171 192 EIRSCEGLE-S--LDLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 192 ~l~~c~~~~-~--~~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
++++|.... . -.+..+++|+.|++++|..+..+.. .+++|+.|+++++. ....+..+..+++|++|+++.+.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999886432 1 2355678999999998854555431 46789999998876 22223456778889999998877
Q ss_pred cchHHHHHhhcCCCCccEEecccccccc------cccccccccceEEEecCc
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLT------SVRISSPCLKTLILECCD 309 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~------~l~~~~~~L~~L~l~~c~ 309 (412)
.... .......+++|+.|+++++...+ .+....++|+.|++.++.
T Consensus 184 ~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 184 SAFL-LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp STTH-HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cccc-chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 6542 22334568889999998753222 111234566666666553
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.19 E-value=1.3e-10 Score=112.71 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
++|++|++++|.+...+....+++|++|+++++.+.. + -...++|++|++++|....--.+..+++|+.|++++|
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~--l---p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK--L---PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc--c---CCCcccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 4566666666555433445556666666666655421 1 1122456666666554322113344566666666655
Q ss_pred CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccc
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
.+..++...++|++|+++++....++ .+..+++|++|+++++.+.
T Consensus 206 -~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 206 -SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp -CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS
T ss_pred -cCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC
Confidence 12222222346666666665522222 2555666666666655544
No 61
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=7.3e-12 Score=129.96 Aligned_cols=174 Identities=14% Similarity=0.179 Sum_probs=127.5
Q ss_pred CCccccCCCCeeEEEEeceeecC-------------------CCCCc--cCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 131 LPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 131 lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
+|..+.++++|++|+|+++.+.. |.... .+++|+.|+|++|.+... +...+.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCC
Confidence 88889999999999999998764 34444 899999999999876322 224467899999
Q ss_pred EEEeeccCCcce--e---------eccCCCCccEEEEeeCCCCceEEE-----ecCcccEEEeeeeeccceEEeccCCCC
Q 015171 190 YLEIRSCEGLES--L---------DLVNLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLFPIEVNVSSCGN 253 (412)
Q Consensus 190 ~L~l~~c~~~~~--~---------~i~~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~l~~~~~~~~~~~~~~~~~ 253 (412)
.|++++|..+.. + ....+++|+.|++++| .+..++. .+++|+.|+++++....++ .++.+++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence 999999973221 1 2234579999999998 2334432 5689999999998844545 7889999
Q ss_pred CcEEEeeccccchHHHHHhhcCCCC-ccEEeccccccccccccc-----ccccceEEEecCcc
Q 015171 254 LKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRIS-----SPCLKTLILECCDK 310 (412)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~-----~~~L~~L~l~~c~~ 310 (412)
|+.|+++++.+.. ++..+..+++ |+.|+++++. +..++.. .++|+.|++++|..
T Consensus 597 L~~L~Ls~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 597 LTDLKLDYNQIEE--IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp ESEEECCSSCCSC--CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred ceEEECcCCcccc--chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcC
Confidence 9999999998873 4555677888 9999999864 3344431 12367777766643
No 62
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=1.7e-11 Score=111.79 Aligned_cols=163 Identities=19% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|++..+... .++ .+..+++|++|++++|.+...+....+++|+.|+++++.+++ +.. +..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~--~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCC--CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred CcccEEEccCCCcc--cCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence 46778877764332 333 356678888888888877655446778888888888877733 122 567788888888
Q ss_pred eccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHH
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (412)
++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++...... .+..+++|+.|+++++.+.+ +..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~L~~N~i~~--l~~ 195 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LRA 195 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--CGG
T ss_pred CCCcCCCChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCCccccch-hhcCCCccCEEECCCCcCCC--Chh
Confidence 7775433223444567777777666 111111 13455666666555421111 14555566666666555544 222
Q ss_pred hhcCCCCccEEecccc
Q 015171 272 GISKLPLLEYLSMTKC 287 (412)
Q Consensus 272 ~~~~~~~L~~L~l~~c 287 (412)
+..+++|+.|+++++
T Consensus 196 -l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 196 -LAGLKNLDVLELFSQ 210 (291)
T ss_dssp -GTTCTTCSEEEEEEE
T ss_pred -hccCCCCCEEECcCC
Confidence 344555666665553
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=8.8e-12 Score=113.29 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=131.4
Q ss_pred CCceEEEEEeCCCccccCC-ccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEE-eCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLP-EIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp-~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le 189 (412)
+++++|+++..... .++ ..+..+++|++|+++++.+... ..+..+++|++|+++++. +.... ...+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence 47888888764332 344 3467789999999999866432 456788999999999886 42211 22356789999
Q ss_pred EEEeeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeecc
Q 015171 190 YLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFL 262 (412)
Q Consensus 190 ~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 262 (412)
+|++++|...... .+..+++|+.|+++++ .+..+. ..+++|++|+++++....... .+..+++|++|+++++
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence 9999988643321 2445789999999887 222222 146889999999886333222 3677899999999998
Q ss_pred ccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcc
Q 015171 263 PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDK 310 (412)
Q Consensus 263 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~ 310 (412)
.+.... ...+..+++|+.|+++++. ++.++ ...++|+.|++++++.
T Consensus 188 ~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 188 RVAHVH-PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred cccccC-HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCc
Confidence 877632 3446678999999999863 33332 2457788888877654
No 64
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.18 E-value=2.2e-12 Score=130.69 Aligned_cols=175 Identities=11% Similarity=0.172 Sum_probs=127.6
Q ss_pred cCCccccCCCCeeEEEEeceeecC-------------------CCCCc--cCcccceeEeeeEEeCHHHHHHHHcCCCCc
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQ-------------------PSENV--KLFSLRKLALREVCADDQAIASLISGCPLI 188 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~-------------------~~~~~--~l~~L~~L~L~~~~~~~~~l~~l~~~~p~L 188 (412)
.+|..+.++++|++|+|+++.+.. +.... .+++|++|+++++.+... +...+.++++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCC
Confidence 388889999999999999998754 35555 899999999999876322 22346789999
Q ss_pred cEEEeeccCCcce--e--ecc------CCCCccEEEEeeCCCCceEEE-----ecCcccEEEeeeeecc-ceEEeccCCC
Q 015171 189 EYLEIRSCEGLES--L--DLV------NLSNLKEIILVNTSDIKRVEI-----KTSNVNALAIHQTYLF-PIEVNVSSCG 252 (412)
Q Consensus 189 e~L~l~~c~~~~~--~--~i~------~l~~L~~L~i~~c~~l~~~~~-----~~p~L~~L~l~~~~~~-~~~~~~~~~~ 252 (412)
++|++++|..+.. + .+. .+++|+.|++++| .+..++. .+++|+.|+++++... .++ .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 9999999973321 2 122 2489999999998 2223332 5689999999988733 445 778889
Q ss_pred CCcEEEeeccccchHHHHHhhcCCCC-ccEEeccccccccccccc-----ccccceEEEecCcc
Q 015171 253 NLKCLKFDFLPIEDEWLCNGISKLPL-LEYLSMTKCHKLTSVRIS-----SPCLKTLILECCDK 310 (412)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~-----~~~L~~L~l~~c~~ 310 (412)
+|+.|+++++.+.. ++..+..+++ |+.|+++++. ++.++.. .++|+.|++++|..
T Consensus 354 ~L~~L~L~~N~l~~--lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 354 KLASLNLAYNQITE--IPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp EESEEECCSSEEEE--CCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCEEECCCCcccc--ccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcC
Confidence 99999999998873 4445677888 9999998864 2244431 23677777777654
No 65
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.18 E-value=3.9e-11 Score=111.45 Aligned_cols=208 Identities=15% Similarity=0.088 Sum_probs=124.4
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+.++.|+++.+.. ..++. .+..+++|++|+++++.+... ..+..+++|++|+++++.++. +. ....++|++
T Consensus 52 ~~l~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTCCE
T ss_pred CCCeEEECCCCcC--CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccccE
Confidence 4677777766432 23443 456678888888888766433 446677888888887776631 11 012367888
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCCC--ceE---EEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSDI--KRV---EIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l--~~~---~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (412)
|++++|...... .+..+++|+.|+++++.-- ... ...+++|++|+++++....++.. ..++|++|+++++.
T Consensus 126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n~ 203 (330)
T 1xku_A 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNK 203 (330)
T ss_dssp EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSC
T ss_pred EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc--ccccCCEEECCCCc
Confidence 888777543221 2445678888888776211 000 11457788888877763222222 23788888888877
Q ss_pred cchHHHHHhhcCCCCccEEecccccccccc---cccccccceEEEecCcccceee---ccCCCeeeEEEeccee
Q 015171 264 IEDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI 331 (412)
Q Consensus 264 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~ 331 (412)
+.... ...+..+++|+.|+++++...... ....++|+.|++++|... .++ ...++|+.+.+.+...
T Consensus 204 l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 204 ITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp CCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCccC-HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 66531 234567788888888875322211 124577888888887543 222 3456677777766544
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.17 E-value=1.2e-11 Score=115.00 Aligned_cols=226 Identities=14% Similarity=0.104 Sum_probs=115.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... ...|..+..+++|++|+++++.+...+... +++|++|+++++.+..- ....+..+++|++|++
T Consensus 78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL-PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC-CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEEC
T ss_pred CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc-cccCCEEECCCCccCcc-CHhHhCCCccCCEEEC
Confidence 35666666553221 112334555666666666666554322211 25666666666655211 1122455666777776
Q ss_pred eccCCcc----eeeccCCCCccEEEEeeCCCCceEEE-ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchH
Q 015171 194 RSCEGLE----SLDLVNLSNLKEIILVNTSDIKRVEI-KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 194 ~~c~~~~----~~~i~~l~~L~~L~i~~c~~l~~~~~-~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++.... ...+..+ +|+.|+++++ .+..++. ..++|++|+++++..... ...+..+++|+.|+++++.+...
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCC-CCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 6664321 1112222 5666666655 1221211 125677777776652221 13456677777777777766552
Q ss_pred HHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcccc----eee-----ccCCCeeeEEEeccee----
Q 015171 268 WLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDKLI----QVE-----IETPNLSIFKYHGDLI---- 331 (412)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l~----~~~-----~~~~~L~~l~~~~~~~---- 331 (412)
....+..+++|+.|+++++. ++.++. ..++|+.|+++++..-. .+. ...+.|+.+.+.+...
T Consensus 233 -~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 233 -ENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -CTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -ChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 12234567777777777752 233432 45667777777764321 010 0134466666655432
Q ss_pred ---eecccccccceEEEE
Q 015171 332 ---SFSSNALSLSETSLC 346 (412)
Q Consensus 332 ---~~l~~~~~L~~l~i~ 346 (412)
..+..+++|+.+.+.
T Consensus 311 ~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp SCGGGGTTBCCSTTEEC-
T ss_pred cCcccccccchhhhhhcc
Confidence 234455566666553
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=4.8e-11 Score=105.47 Aligned_cols=166 Identities=18% Similarity=0.134 Sum_probs=84.7
Q ss_pred CeeEEEEeceeecCC--CCCccCcccceeEeeeEE-eCHHHHHHHHcCCCCccEEEeeccCCcceee---ccCCCCccEE
Q 015171 140 SLHVLELSYCKLQQP--SENVKLFSLRKLALREVC-ADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEI 213 (412)
Q Consensus 140 ~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~l~~L~~L 213 (412)
+|++|+++++.+... ..+..+++|++|+++++. ++.-. ...+..+++|++|++++|..+..+. +..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 566666666654322 234556666666666664 32110 1123456666666666643333332 2345666666
Q ss_pred EEeeC--CCCceEEEecCccc---EEEeeee-eccceEE-eccCCCCCc-EEEeeccccchHHHHHhhcCCCCccEEecc
Q 015171 214 ILVNT--SDIKRVEIKTSNVN---ALAIHQT-YLFPIEV-NVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 214 ~i~~c--~~l~~~~~~~p~L~---~L~l~~~-~~~~~~~-~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (412)
+++++ ..+.. ....++|+ +|+++++ ....+.. .+..+++|+ +|+++++.+..- ....+.. ++|+.|+++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i-~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV-QGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEE-CTTTTTT-CEEEEEECT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCccc-CHhhcCC-CCCCEEEcC
Confidence 66665 11211 11334454 6666665 3211111 245667777 777776665531 1112222 567777777
Q ss_pred cccccccccc----cc-cccceEEEecCc
Q 015171 286 KCHKLTSVRI----SS-PCLKTLILECCD 309 (412)
Q Consensus 286 ~c~~l~~l~~----~~-~~L~~L~l~~c~ 309 (412)
++..++.++. .. ++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 6644444432 33 567777776643
No 68
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.16 E-value=3.4e-11 Score=106.40 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=130.3
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEecee-ecCC--CCCccCcccceeEeee-EEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCK-LQQP--SENVKLFSLRKLALRE-VCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~-~~~~--~~~~~l~~L~~L~L~~-~~~~~~~l~~l~~~~p~L 188 (412)
.+++.|+++.... ..+|. .+..+++|++|+++++. +... ..+..+++|++|++++ +.+..-. ...+.++++|
T Consensus 31 ~~l~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHL--RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCC--SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred CcccEEEEeCCcc--eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence 3788898887543 24554 46678999999999986 5322 3567899999999998 5553211 1235678999
Q ss_pred cEEEeeccCCcceeeccCCCCcc---EEEEeeCCCCceEEE----ecCccc-EEEeeeeeccceEEeccCCCCCcEEEee
Q 015171 189 EYLEIRSCEGLESLDLVNLSNLK---EIILVNTSDIKRVEI----KTSNVN-ALAIHQTYLFPIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 189 e~L~l~~c~~~~~~~i~~l~~L~---~L~i~~c~~l~~~~~----~~p~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 260 (412)
++|++++|....--.+..+++|+ .|+++++..+..+.. .+++|+ .|+++++....+.......++|++|+++
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999988643322244566777 999988756666543 467899 9999887633322222233789999999
Q ss_pred ccc-cchHHHHHhhcCC-CCccEEecccccccccccc-cccccceEEEecCcc
Q 015171 261 FLP-IEDEWLCNGISKL-PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDK 310 (412)
Q Consensus 261 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~ 310 (412)
++. +..- ....+..+ ++|+.|+++++ .++.++. .+++|+.|++.++..
T Consensus 188 ~n~~l~~i-~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 188 KNKYLTVI-DKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCCEE-CTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC--
T ss_pred CCCCcccC-CHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCccC
Confidence 884 6541 23345677 89999999984 3444543 578899998887753
No 69
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=113.26 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=63.6
Q ss_pred hhhHHHHHHHHHhCCceEEEEEeCCCccccCCccc--cCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEE
Q 015171 101 ASLAGRCLGLAIESEVKELVLVHWRSERRNLPEII--FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVC 172 (412)
Q Consensus 101 ~~~~~~~l~~~~~~~l~~L~l~~~~~~~~~lp~~~--~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~ 172 (412)
...+..........++++|+++.+... ...|..+ ..+++|++|+++++.+... .....+++|++|+++++.
T Consensus 78 ~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 78 AQLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred HHHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 444555555555567888888764322 2334444 5667777777777765432 111246677777777766
Q ss_pred eCHHHHHHHHcCCCCccEEEeeccCCcce------eeccCCCCccEEEEeeC
Q 015171 173 ADDQAIASLISGCPLIEYLEIRSCEGLES------LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 173 ~~~~~l~~l~~~~p~Le~L~l~~c~~~~~------~~i~~l~~L~~L~i~~c 218 (412)
+.... ...+..+++|++|++++|..... ..+..+++|+.|++++|
T Consensus 157 l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 157 SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 52211 12244566777777776653321 11233556666666655
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.16 E-value=2.5e-12 Score=118.56 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=97.4
Q ss_pred CCCCeeEEEEeceeecCC--CCC--ccCcccceeEeeeEEeCHH--HHHHHHc-CCCCccEEEeeccCCccee--eccCC
Q 015171 137 YVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQ--AIASLIS-GCPLIEYLEIRSCEGLESL--DLVNL 207 (412)
Q Consensus 137 ~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~--~l~~l~~-~~p~Le~L~l~~c~~~~~~--~i~~l 207 (412)
.+++|++|+++++.+... ... ..+++|++|+++++.++.. .+..+.. ..++|++|++++|...... .+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578888888888877532 222 6788888888888887332 2222211 1378888888887543211 23344
Q ss_pred CCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch--HHHHHhhcCCCCccEEecc
Q 015171 208 SNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED--EWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 208 ~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~ 285 (412)
++|+.|+++++.-...+. .+....+..+++|++|+++++.+.. .....+...+++|+.|+++
T Consensus 173 ~~L~~L~Ls~N~l~~~~~----------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls 236 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERG----------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236 (312)
T ss_dssp SSCCEEECCSCTTCHHHH----------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred CCCCEEECCCCCcCcchH----------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence 556666665542110000 0001112445556666665555542 1222333445566666665
Q ss_pred cccccccc----cccccccceEEEecCcccceeeccC-CCeeeEEEeccee---eecccccccceEEEEE
Q 015171 286 KCHKLTSV----RISSPCLKTLILECCDKLIQVEIET-PNLSIFKYHGDLI---SFSSNALSLSETSLCF 347 (412)
Q Consensus 286 ~c~~l~~l----~~~~~~L~~L~l~~c~~l~~~~~~~-~~L~~l~~~~~~~---~~l~~~~~L~~l~i~~ 347 (412)
++...... ....++|+.|+++++..- .++... ++|+.|.+.+... ..+..+++|+++.+..
T Consensus 237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKG 305 (312)
T ss_dssp TSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCSCCCTTTSCEEEEEECTT
T ss_pred CCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCCChhHhhCCCCCEEeccC
Confidence 54222211 112345566666555432 222211 3555555554433 1244556666666643
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=5e-12 Score=114.15 Aligned_cols=169 Identities=15% Similarity=0.126 Sum_probs=95.3
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++++.+..+... .+ ..+..+++|++|+++++.+...+....+++|++|+++++.++.. ....+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~--~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK--SV-QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCC--CC-TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcc--cc-cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence 346777777653322 22 23566778888888887766555566777788888877766321 112245677778887
Q ss_pred eeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccc
Q 015171 193 IRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 193 l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~ 265 (412)
+++|...... .+..+++|+.|++++| .+..+. ..+++|+.|+++++...... ..+..+++|++|+++++.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 7777543211 1344567777777766 222221 13456666666665521111 12355666666666666555
Q ss_pred hHHHHHhhcCCCCccEEecccc
Q 015171 266 DEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~c 287 (412)
.. ....+..+++|+.|+++++
T Consensus 195 ~~-~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 195 SV-PDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CC-CTTTTTTCTTCCEEECCSS
T ss_pred cc-CHHHHhCCcCCCEEEccCC
Confidence 41 1223445666666666654
No 72
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.15 E-value=3.1e-11 Score=113.27 Aligned_cols=151 Identities=22% Similarity=0.228 Sum_probs=83.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCC--CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEE
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSE--NVKLFSLRKLALREVCADDQAIASLISGCPLIEYL 191 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L 191 (412)
++++.|+++.+... ...|..+..+++|++|+++++.+...+. ...+++|++|+++++.+..-.....+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 76 VNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 46777777654322 1223345667777888877776654322 45677777777777766321110134567777777
Q ss_pred EeeccCCccee---eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccc
Q 015171 192 EIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 192 ~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 263 (412)
++++|.....+ .+..+++|+.|+++++ .+..+. ..+++|++|+++++....... .+..+++|+.|+++++.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 77777544433 2344567777777766 222221 134566666666655211111 12335666666666655
Q ss_pred cch
Q 015171 264 IED 266 (412)
Q Consensus 264 ~~~ 266 (412)
+..
T Consensus 234 l~~ 236 (353)
T 2z80_A 234 LDT 236 (353)
T ss_dssp CTT
T ss_pred ccc
Confidence 543
No 73
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=2.5e-11 Score=121.53 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=121.8
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
..+++.|++..+... .+| .+..+++|+.|+|++|.+...+....+++|+.|+|+++.+.. +. -+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEE
Confidence 457888887764432 344 477899999999999988766558889999999999998843 12 367899999999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
|++|.....-.+..+++|+.|++++| .+..+. ..+++|+.|+++++...... .+..+++|+.|+|++|.+.+ +.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~--l~ 191 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LR 191 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCB--CG
T ss_pred ecCCCCCCCccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCcCCCch-hhccCCCCCEEECcCCCCCC--Ch
Confidence 99886544334556789999999988 222221 25688999999888732221 27888999999999888876 23
Q ss_pred HhhcCCCCccEEeccccc
Q 015171 271 NGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~ 288 (412)
.+..+++|+.|+|++++
T Consensus 192 -~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 -ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GGTTCTTCSEEECCSEE
T ss_pred -HHccCCCCCEEEccCCc
Confidence 36778999999998864
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.13 E-value=3.3e-11 Score=103.18 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=83.2
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|++..+... .+| .+..+++|++|++++|.+...+....+++|++|+++++.+++..... +..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEe
Confidence 36777777764332 444 46667777777777775555455566777777777776654322222 445667777777
Q ss_pred eccCCcc--eeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHH
Q 015171 194 RSCEGLE--SLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCN 271 (412)
Q Consensus 194 ~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 271 (412)
++|.... .-.+..+++|+.|++++|..+.. +. .+..+++|+.|+++++.+.+ +.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--------------------~~-~l~~l~~L~~L~l~~n~i~~--~~- 175 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITD--------------------IM-PLKTLPELKSLNIQFDGVHD--YR- 175 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--------------------CG-GGGGCSSCCEEECTTBCCCC--CT-
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccc--------------------cH-hhcCCCCCCEEECCCCCCcC--hH-
Confidence 6664432 11233445555555555421211 11 34566777777777776655 22
Q ss_pred hhcCCCCccEEeccc
Q 015171 272 GISKLPLLEYLSMTK 286 (412)
Q Consensus 272 ~~~~~~~L~~L~l~~ 286 (412)
.+..+++|+.|++++
T Consensus 176 ~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFS 190 (197)
T ss_dssp TGGGCSSCCEEEECB
T ss_pred HhccCCCCCEEEeeC
Confidence 345667777777766
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.13 E-value=5.5e-11 Score=121.46 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=29.2
Q ss_pred ccccceEEEecCcccc---eeeccCCCeeeEEEeccee-------------eecccccccceEEEEEe
Q 015171 297 SPCLKTLILECCDKLI---QVEIETPNLSIFKYHGDLI-------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 297 ~~~L~~L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-------------~~l~~~~~L~~l~i~~~ 348 (412)
+++|+.|+++++..-. .....+++|+.+.+.+... ..+.++++|+.|.+..+
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 4566666666654321 1122456677777665543 12566677777777554
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=9.2e-10 Score=109.85 Aligned_cols=83 Identities=13% Similarity=-0.002 Sum_probs=48.5
Q ss_pred ecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccccch-HHHHHhhcCCCCccEEecccccccccccc----ccccc
Q 015171 227 KTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLPIED-EWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 227 ~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
.+++|++|+++++. ....+..+..+++|+.|+++++.+.. ..+...+..+++|+.|+++++.....++. ..++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45677777777766 22123345677788888888777664 12334456677788887777543221221 23455
Q ss_pred ceEEEecCc
Q 015171 301 KTLILECCD 309 (412)
Q Consensus 301 ~~L~l~~c~ 309 (412)
+.|++++|.
T Consensus 431 ~~L~l~~n~ 439 (562)
T 3a79_B 431 LVLNLSSNM 439 (562)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCC
Confidence 555555554
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.13 E-value=8e-12 Score=115.19 Aligned_cols=206 Identities=17% Similarity=0.089 Sum_probs=131.3
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHH-------HcCCCCccEEEeeccCCccee--ec--cCC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASL-------ISGCPLIEYLEIRSCEGLESL--DL--VNL 207 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l-------~~~~p~Le~L~l~~c~~~~~~--~i--~~l 207 (412)
++|++|+++++.+..+... ...|+.|+++++.+....+... ..++++|++|++++|...+.. .+ ..+
T Consensus 43 ~~L~~l~l~~n~l~~p~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTEADLGQF--TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTTCCCHHH--HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeecccccccHHHH--HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 4566666666655221111 1237888888777622111111 226889999999998654322 22 567
Q ss_pred CCccEEEEeeC--CCCceEEEec-----CcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchH-HHHHhh--cCC
Q 015171 208 SNLKEIILVNT--SDIKRVEIKT-----SNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDE-WLCNGI--SKL 276 (412)
Q Consensus 208 ~~L~~L~i~~c--~~l~~~~~~~-----p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~--~~~ 276 (412)
++|+.|+++++ .......... ++|++|+++++...... ..+..+++|++|+++++.+... .+.... ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 89999999987 2221111122 89999999998733322 4577899999999999987653 122222 788
Q ss_pred CCccEEeccccccc--cccc----ccccccceEEEecCccccee----eccCCCeeeEEEeccee----eecccccccce
Q 015171 277 PLLEYLSMTKCHKL--TSVR----ISSPCLKTLILECCDKLIQV----EIETPNLSIFKYHGDLI----SFSSNALSLSE 342 (412)
Q Consensus 277 ~~L~~L~l~~c~~l--~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~l~~~~~~~----~~l~~~~~L~~ 342 (412)
++|+.|+++++.-. ..++ ...++|+.|+++++...... ....++|+.|.+.++.. ..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 99999999996422 1222 24479999999998654322 23457899999888655 1222 68999
Q ss_pred EEEEEe
Q 015171 343 TSLCFS 348 (412)
Q Consensus 343 l~i~~~ 348 (412)
|.++.+
T Consensus 279 L~Ls~N 284 (312)
T 1wwl_A 279 LDLSYN 284 (312)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 999766
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=3.7e-11 Score=113.09 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=17.5
Q ss_pred cccceeEeeeEEeCH---HHHHHHHcCC-CCccEEEeeccC
Q 015171 161 FSLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCE 197 (412)
Q Consensus 161 ~~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~ 197 (412)
++|++|+|+++.+++ ..+...+..+ ++|++|++++|.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 555555555555422 2233333333 455555555554
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.11 E-value=4.3e-11 Score=107.96 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=109.5
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
..+++|++|.+.++.+...+....+++|+.|+++++.+.+- . -+..+++|++|++++|...... .+..+++|+.|
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 44688999999999887767788899999999999888432 2 3678999999999988543221 14457888888
Q ss_pred EEeeCCCCceEE----EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 214 ~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
++++| .+..+. ..+++|++|+++++...... ..+..+++|+.|+++++.+... ....+..+++|+.|+++++.
T Consensus 115 ~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 115 VLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp ECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc-CHHHhcCCccCCEEECCCCc
Confidence 88877 222222 13567777777776522211 1245677777777777766542 22334566777777777653
Q ss_pred cccccc---ccccccceEEEecCc
Q 015171 289 KLTSVR---ISSPCLKTLILECCD 309 (412)
Q Consensus 289 ~l~~l~---~~~~~L~~L~l~~c~ 309 (412)
.....+ ..+++|+.|++++++
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHHHHhCCcCCCEEEccCCC
Confidence 221111 234566666666654
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.11 E-value=8.9e-11 Score=105.76 Aligned_cols=86 Identities=22% Similarity=0.135 Sum_probs=48.0
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ecc
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLV 205 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~ 205 (412)
.+|..+. ++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|+++++...... .+.
T Consensus 30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 4554332 5677788877766443 2456677777777777665311 1122456677777777766432111 122
Q ss_pred CCCCccEEEEeeC
Q 015171 206 NLSNLKEIILVNT 218 (412)
Q Consensus 206 ~l~~L~~L~i~~c 218 (412)
.+++|+.|+++++
T Consensus 107 ~l~~L~~L~l~~n 119 (270)
T 2o6q_A 107 QLVNLAELRLDRN 119 (270)
T ss_dssp TCSSCCEEECCSS
T ss_pred cccCCCEEECCCC
Confidence 3455666665554
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.09 E-value=1.7e-11 Score=116.52 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=128.1
Q ss_pred CCceEEEEEeCCCc--cccCCccc-------cCCCCeeEEEEeceeecCC------CCCccCcccceeEeeeEEeCHHH-
Q 015171 114 SEVKELVLVHWRSE--RRNLPEII-------FYVESLHVLELSYCKLQQP------SENVKLFSLRKLALREVCADDQA- 177 (412)
Q Consensus 114 ~~l~~L~l~~~~~~--~~~lp~~~-------~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L~~~~~~~~~- 177 (412)
++++.|+++.+... ...+|..+ ..+++|++|+|+++.+... .....+++|++|+|++|.+++..
T Consensus 60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 47888888764221 12334333 5678888888888877542 23466788888888888875433
Q ss_pred --HHHHHcCC---------CCccEEEeeccCCcc-ee-----eccCCCCccEEEEeeCCCCce---------EEEecCcc
Q 015171 178 --IASLISGC---------PLIEYLEIRSCEGLE-SL-----DLVNLSNLKEIILVNTSDIKR---------VEIKTSNV 231 (412)
Q Consensus 178 --l~~l~~~~---------p~Le~L~l~~c~~~~-~~-----~i~~l~~L~~L~i~~c~~l~~---------~~~~~p~L 231 (412)
+...+..+ ++|++|++++|.... .+ .+..+++|+.|++++| .+.. ....+++|
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCc
Confidence 33333344 888888888886431 11 2334678888888887 2220 11246788
Q ss_pred cEEEeeeeec-----cceEEeccCCCCCcEEEeeccccchHHHH---Hhh--cCCCCccEEecccccccc----cccc--
Q 015171 232 NALAIHQTYL-----FPIEVNVSSCGNLKCLKFDFLPIEDEWLC---NGI--SKLPLLEYLSMTKCHKLT----SVRI-- 295 (412)
Q Consensus 232 ~~L~l~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~--~~~~~L~~L~l~~c~~l~----~l~~-- 295 (412)
+.|+++++.. ..+...+..+++|++|++++|.+.+.... ..+ ..+++|+.|++++|.... .++.
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 9999888772 22334567788999999999888775332 333 237889999999874333 2433
Q ss_pred --cccccceEEEecCccc
Q 015171 296 --SSPCLKTLILECCDKL 311 (412)
Q Consensus 296 --~~~~L~~L~l~~c~~l 311 (412)
.+++|++|++++|..-
T Consensus 299 ~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHCTTCCEEECTTSBSC
T ss_pred HhcCCCceEEEccCCcCC
Confidence 3588999999888653
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.08 E-value=1.8e-10 Score=117.66 Aligned_cols=229 Identities=16% Similarity=0.141 Sum_probs=142.8
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|+++.... ..+|. .+.++++|++|+++++.+... ..+..+++|++|+++++.+..-. ...+.++++|++
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSE
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCE
Confidence 5788888887432 24454 466788999999998876543 33567889999999888763211 113567889999
Q ss_pred EEeeccCCcce--eeccCCCCccEEEEeeCCCCceE----EEecCcccEEEeeeeeccceE-Ee--ccCCCCCcEEEeec
Q 015171 191 LEIRSCEGLES--LDLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTYLFPIE-VN--VSSCGNLKCLKFDF 261 (412)
Q Consensus 191 L~l~~c~~~~~--~~i~~l~~L~~L~i~~c~~l~~~----~~~~p~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~ 261 (412)
|++++|..... -.+..+++|+.|++++|. +..+ ...+++|++|+++++...... .. ...+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 99988854321 135567889999998872 1111 125678999998887622111 11 23457899999987
Q ss_pred cccchHHHHHhhcCC---------------------------CCccEEecccccccccccc---cc--cccceEEEecCc
Q 015171 262 LPIEDEWLCNGISKL---------------------------PLLEYLSMTKCHKLTSVRI---SS--PCLKTLILECCD 309 (412)
Q Consensus 262 ~~~~~~~~~~~~~~~---------------------------~~L~~L~l~~c~~l~~l~~---~~--~~L~~L~l~~c~ 309 (412)
+.+.... ...+..+ ++|+.|+++++......+. .. ++|+.|++++|.
T Consensus 181 n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 181 NQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp CCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 7654311 1112222 4566666666432221111 12 348888888876
Q ss_pred ccce---eeccCCCeeeEEEeccee-----eecccccccceEEEEE
Q 015171 310 KLIQ---VEIETPNLSIFKYHGDLI-----SFSSNALSLSETSLCF 347 (412)
Q Consensus 310 ~l~~---~~~~~~~L~~l~~~~~~~-----~~l~~~~~L~~l~i~~ 347 (412)
.-.. ....+++|+.+.+.+... ..+.++++|+.+.+..
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence 4321 123567888888877654 3567788899888853
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.07 E-value=1.2e-10 Score=106.01 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=126.3
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..+++|++|++++|.+...+....+++|+.|+++++.+++-. . +..+++|++|++++|.....-.+..+++|+.|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 346889999999998876667888999999999999884322 1 6789999999999986543334666899999999
Q ss_pred eeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc
Q 015171 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV 293 (412)
Q Consensus 216 ~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 293 (412)
++| .+..+. ..+++|+.|+++++..... ..+..+++|++|+++++.+... .. +..+++|+.|+++++. ++.+
T Consensus 120 ~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l 193 (291)
T 1h6t_A 120 EHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL 193 (291)
T ss_dssp TTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred CCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCC
Confidence 988 222221 1568999999998873332 4577899999999999988763 22 6789999999999862 3333
Q ss_pred c--ccccccceEEEecCcc
Q 015171 294 R--ISSPCLKTLILECCDK 310 (412)
Q Consensus 294 ~--~~~~~L~~L~l~~c~~ 310 (412)
+ ...++|+.|++++++.
T Consensus 194 ~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 194 RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GGGTTCTTCSEEEEEEEEE
T ss_pred hhhccCCCCCEEECcCCcc
Confidence 2 2568899999998754
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.05 E-value=1.1e-10 Score=105.41 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=100.0
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
...+|..+. ++|++|+++++.+... ..+..+++|++|+++++.+.... ...+..+++|++|++++|...... .
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGA 95 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccCccChhh
Confidence 345555442 5688888888766433 35667888888888887663211 112456788888888877543221 2
Q ss_pred ccCCCCccEEEEeeC--CCCceEEE-ecCcccEEEeeeeeccc--eEEeccCCCCCcEEEeeccccchH---HHHHhhcC
Q 015171 204 LVNLSNLKEIILVNT--SDIKRVEI-KTSNVNALAIHQTYLFP--IEVNVSSCGNLKCLKFDFLPIEDE---WLCNGISK 275 (412)
Q Consensus 204 i~~l~~L~~L~i~~c--~~l~~~~~-~~p~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~ 275 (412)
+..+++|+.|++.++ ..+....+ .+++|++|+++++.... ++..+..+++|++|+++++.+... .+.. +..
T Consensus 96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 174 (276)
T 2z62_A 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQ 174 (276)
T ss_dssp TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHT
T ss_pred hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhh
Confidence 445677888877766 22221112 45677777777665222 234566777788888877766542 1111 222
Q ss_pred CCCcc-EEecccccccccccc---cccccceEEEecCc
Q 015171 276 LPLLE-YLSMTKCHKLTSVRI---SSPCLKTLILECCD 309 (412)
Q Consensus 276 ~~~L~-~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~ 309 (412)
++.|. .|+++++. ++.++. ...+|+.|+++++.
T Consensus 175 L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 175 MPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp CTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred ccccceeeecCCCc-ccccCccccCCCcccEEECCCCc
Confidence 33333 66776642 222221 22367777776654
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.05 E-value=2.5e-11 Score=111.70 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=102.8
Q ss_pred CCceEEEEEeCCCccccCCcc--ccCCCCeeEEEEeceeecCC--CCC--ccCcccceeEeeeEEeCHHH--HH-HHHcC
Q 015171 114 SEVKELVLVHWRSERRNLPEI--IFYVESLHVLELSYCKLQQP--SEN--VKLFSLRKLALREVCADDQA--IA-SLISG 184 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~--~~~~~~L~~L~L~~~~~~~~--~~~--~~l~~L~~L~L~~~~~~~~~--l~-~l~~~ 184 (412)
..++.+.+.........+... ....++|++|++++|.+... ... ..+++|++|+++++.++... +. .-+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 367778777643222111111 12346799999999977543 233 78999999999999884311 11 12347
Q ss_pred CCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCce--E-----EEecCcccEEEeeeeeccceEE----eccCC
Q 015171 185 CPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKR--V-----EIKTSNVNALAIHQTYLFPIEV----NVSSC 251 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~--~-----~~~~p~L~~L~l~~~~~~~~~~----~~~~~ 251 (412)
+++|++|++++|...... .+..+++|+.|+++++.-... + ....|+|++|+++++....... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 899999999988653221 233467777777777631110 0 0134556666665554211011 12344
Q ss_pred CCCcEEEeeccccchHHHHHhhcCC---CCccEEecccccccccccc-cccccceEEEecCc
Q 015171 252 GNLKCLKFDFLPIEDEWLCNGISKL---PLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCD 309 (412)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~ 309 (412)
++|++|+++++.+.... +..+..+ ++|++|+++++. ++.++. .+++|+.|+++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~ 283 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR 283 (310)
T ss_dssp CCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC
T ss_pred CCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc
Confidence 56666666555554421 1111222 456666665532 223322 22455555555553
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.04 E-value=1.3e-09 Score=109.44 Aligned_cols=196 Identities=17% Similarity=0.083 Sum_probs=129.4
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++.|+++.+... .+|. .+++|++|++++|.+...+. .+++|+.|+++++.++. +-...++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTS-----LPVLPPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSC-----CCCCCTTCCEEE
T ss_pred CCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCc-----CCCCCCCCCEEE
Confidence 368999999985433 5665 56899999999987765433 67888888888876632 122357888888
Q ss_pred eeccCCcc---------eeec---------cCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCC
Q 015171 193 IRSCEGLE---------SLDL---------VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL 254 (412)
Q Consensus 193 l~~c~~~~---------~~~i---------~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L 254 (412)
+++|.... .+.+ ..+++|+.|++++| .+..++...++|+.|.++++....++ ..+++|
T Consensus 148 Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L 223 (622)
T 3g06_A 148 VSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLP---ALPSGL 223 (622)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCC---CCCTTC
T ss_pred CcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCC-CCCCCCCccchhhEEECcCCcccccC---CCCCCC
Confidence 88774321 0000 11256666666655 23333333466777777666522211 235789
Q ss_pred cEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCcccceee---ccCCCeeeEEEeccee
Q 015171 255 KCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQVE---IETPNLSIFKYHGDLI 331 (412)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~---~~~~~L~~l~~~~~~~ 331 (412)
+.|++++|.+.. + ...+++|+.|+++++ .++.++..+++|+.|++++|..- .++ ..+++|+.+.+.++..
T Consensus 224 ~~L~Ls~N~L~~--l---p~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 224 KELIVSGNRLTS--L---PVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CEEECCSSCCSC--C---CCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCC
T ss_pred CEEEccCCccCc--C---CCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCC
Confidence 999999988775 2 256789999999986 55667777889999999988543 332 3567888888877643
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.04 E-value=1.2e-10 Score=99.66 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=96.4
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcc--eeeccCCCCccEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLE--SLDLVNLSNLKEI 213 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~--~~~i~~l~~L~~L 213 (412)
..+++|++|+++++.+...+....+++|++|+++++.+.+- . .+..+++|++|++++|.... .-.+..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~------- 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSG------- 110 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTT-------
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcC-------
Confidence 44677888888888776545667788888888887755221 1 25567777777777764432 112223
Q ss_pred EEeeCCCCceEEEecCcccEEEeeeee-ccceEEeccCCCCCcEEEeeccc-cchHHHHHhhcCCCCccEEecccccccc
Q 015171 214 ILVNTSDIKRVEIKTSNVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (412)
Q Consensus 214 ~i~~c~~l~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 291 (412)
+++|++|+++++. .......+..+++|++|+++++. +.+ +. .+..+++|+.|++++|. ++
T Consensus 111 --------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~-i~ 172 (197)
T 4ezg_A 111 --------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG-VH 172 (197)
T ss_dssp --------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC-CC
T ss_pred --------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC-Cc
Confidence 3455555555554 11123456789999999999987 655 23 46789999999999974 23
Q ss_pred cc--cccccccceEEEecCc
Q 015171 292 SV--RISSPCLKTLILECCD 309 (412)
Q Consensus 292 ~l--~~~~~~L~~L~l~~c~ 309 (412)
.+ ...+++|+.|++++..
T Consensus 173 ~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 173 DYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCTTGGGCSSCCEEEECBC-
T ss_pred ChHHhccCCCCCEEEeeCcc
Confidence 33 2356889999998764
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.04 E-value=1e-09 Score=106.41 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=46.7
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+... .+| .+..+++|++|+++++.+...+ ...++|++|+++++.+.. +.. +..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEEC
Confidence 47888888775433 366 4777788888888887665322 123467777777666522 111 455666666666
Q ss_pred eccC
Q 015171 194 RSCE 197 (412)
Q Consensus 194 ~~c~ 197 (412)
++|.
T Consensus 203 ~~N~ 206 (454)
T 1jl5_A 203 DNNS 206 (454)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6654
No 89
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.04 E-value=2.6e-09 Score=106.55 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=117.1
Q ss_pred CCCccEEEeeccCCcceeeccCCCCccEEEEeeCC--C-CceEEEecCcccEEEeeeeecc---ceEEeccCCCCCcEEE
Q 015171 185 CPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTS--D-IKRVEIKTSNVNALAIHQTYLF---PIEVNVSSCGNLKCLK 258 (412)
Q Consensus 185 ~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~--~-l~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~ 258 (412)
.++|++|++++|..........+++|+.|+++++. . .......+++|+.|+++++... ..+..+..+++|+.|+
T Consensus 330 ~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp TCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 36799999998865332222457899999999882 1 1111235789999999988722 2223467899999999
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccccccc-cccceEEEecCcccceeec---cCCCeeeEEEeccee---
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISS-PCLKTLILECCDKLIQVEI---ETPNLSIFKYHGDLI--- 331 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~L~~L~l~~c~~l~~~~~---~~~~L~~l~~~~~~~--- 331 (412)
++++.+........+..+++|+.|+++++.....++... ++|+.|++++|.. ..++. ..++|+.+.+.+...
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l-~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCC-CCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcC-cccChhhcCCCCCCEEECCCCCCCCC
Confidence 999988763333446678999999999976545555544 6899999999843 33332 567889998887765
Q ss_pred --eecccccccceEEEEEecc
Q 015171 332 --SFSSNALSLSETSLCFSSH 350 (412)
Q Consensus 332 --~~l~~~~~L~~l~i~~~~~ 350 (412)
..+..+++|+.+.+..+..
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 489 PDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CTTSTTTCTTCCCEECCSCCB
T ss_pred CHHHHhcCCCCCEEEecCCCc
Confidence 2377889999999987743
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.03 E-value=5.3e-11 Score=107.59 Aligned_cols=189 Identities=21% Similarity=0.200 Sum_probs=127.0
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+... .++. .+..+++|++|+++++.+... ..+..+++|++|+++++.+..... ..+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLR--HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCC--EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCE
T ss_pred CCccEEECCCCccc--ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccccE
Confidence 47888888764332 3443 567789999999999876433 357789999999999987743221 23567899999
Q ss_pred EEeeccCCcc--eeeccCCCCccEEEEeeCCCCceE-----EEecCcccEEEeeeeeccce-EEeccCCCCCc----EEE
Q 015171 191 LEIRSCEGLE--SLDLVNLSNLKEIILVNTSDIKRV-----EIKTSNVNALAIHQTYLFPI-EVNVSSCGNLK----CLK 258 (412)
Q Consensus 191 L~l~~c~~~~--~~~i~~l~~L~~L~i~~c~~l~~~-----~~~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~----~L~ 258 (412)
|++++|.... ...+..+++|+.|+++++ .+..+ ...+++|++|+++++..... ...+..+++|+ .|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeee
Confidence 9999886432 224566799999999987 22221 12568999999998872221 12344455555 889
Q ss_pred eeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCc
Q 015171 259 FDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 259 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~ 309 (412)
++++.+... ........+|+.|+++++. ++.++. ..++|+.|++++++
T Consensus 184 ls~n~l~~~--~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 184 LSLNPMNFI--QPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSSCCCEE--CTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred cCCCccccc--CccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCc
Confidence 988887652 2222334589999999864 333332 35677777777653
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.02 E-value=1.3e-10 Score=116.35 Aligned_cols=145 Identities=19% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .++. +..+++|++|+|++|.+...+....+++|+.|+|+++.+.+ +. -+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~--~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLT--DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--IN-GLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCC--CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CG-GGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCC--CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Cc-cccCCCccCEEEC
Confidence 45666666543221 2222 45566666666666655544555566666666666665522 11 1445666666666
Q ss_pred eccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 266 (412)
++|.....-.+..+++|+.|++++| ..+.. ...+++|+.|+++++....+ ..+..+++|+.|+++++.+..
T Consensus 139 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 139 GNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 6654332223344566666666655 11111 11345666666666552221 234556666666666555443
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.00 E-value=3.4e-10 Score=103.01 Aligned_cols=169 Identities=16% Similarity=0.079 Sum_probs=91.0
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
.+++++++++++++.+...+.. -.++++.|+++++.++.... ..+..+++|++|+++++..........+++|+.|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPD-LPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSC-CCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred cccCCccEEECCCCCCCcCCCC-CCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 3455666666666655432211 12566777776665532111 124556777777777664332212234566777776
Q ss_pred eeCCCCceEE---EecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccc
Q 015171 216 VNTSDIKRVE---IKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLT 291 (412)
Q Consensus 216 ~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 291 (412)
+++ .+..++ ...++|++|+++++....+. ..+..+++|++|+++++.+... ....+..+++|+.|+++++. ++
T Consensus 85 s~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~ 161 (290)
T 1p9a_G 85 SHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNN-LT 161 (290)
T ss_dssp CSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CS
T ss_pred CCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCc-CC
Confidence 665 222221 23566777777666522222 2356677777777777766542 22334556777777777642 33
Q ss_pred cccc----cccccceEEEecCc
Q 015171 292 SVRI----SSPCLKTLILECCD 309 (412)
Q Consensus 292 ~l~~----~~~~L~~L~l~~c~ 309 (412)
.++. ..++|+.|+++++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHHHhcCcCCCCEEECCCCc
Confidence 3332 34567777776653
No 93
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.99 E-value=1.6e-10 Score=107.44 Aligned_cols=225 Identities=17% Similarity=0.053 Sum_probs=121.0
Q ss_pred CCceEEEEEeCCCccccC-CccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNL-PEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~l-p~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++.|++..+... .+ |..+..+++|++|+++++.+... ..+..+++|++|+++++.+.. +.. ...++|++
T Consensus 54 ~~l~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS--ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVE 127 (332)
T ss_dssp TTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCE
T ss_pred CCCeEEECCCCcCC--ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCE
Confidence 35666666653322 23 23455666777777776654322 345566777777776665531 110 11256777
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeCCC----CceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeecccc
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNTSD----IKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPI 264 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~----l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (412)
|+++++...... .+..+++|+.|++.++.- ...-.....+|++|+++++....++.. ..++|++|+++++.+
T Consensus 128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~--~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD--LPETLNELHLDHNKI 205 (332)
T ss_dssp EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS--SCSSCSCCBCCSSCC
T ss_pred EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc--ccCCCCEEECCCCcC
Confidence 777666432211 134456777777766511 000011112666777666652222211 236788888887776
Q ss_pred chHHHHHhhcCCCCccEEecccccccccc---cccccccceEEEecCccccee---eccCCCeeeEEEeccee-----ee
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSV---RISSPCLKTLILECCDKLIQV---EIETPNLSIFKYHGDLI-----SF 333 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~---~~~~~~L~~l~~~~~~~-----~~ 333 (412)
.... ...+..+++|+.|+++++...... ...+++|+.|++++|..- .+ ...+++|+.+.+.+... ..
T Consensus 206 ~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 206 QAIE-LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCCC-TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CccC-HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 6521 233566788888888875322211 124578888888887543 22 23556778887776544 11
Q ss_pred ccc------ccccceEEEEEe
Q 015171 334 SSN------ALSLSETSLCFS 348 (412)
Q Consensus 334 l~~------~~~L~~l~i~~~ 348 (412)
+.. ..+|+++.+..+
T Consensus 284 ~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 284 FCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp SSCSSCCSSSCCBSEEECCSS
T ss_pred ccccccccccccccceEeecC
Confidence 111 345677777554
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.98 E-value=3.3e-10 Score=101.99 Aligned_cols=102 Identities=18% Similarity=0.107 Sum_probs=71.7
Q ss_pred CCceEEEEEeCCCccccCCc-cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 114 SEVKELVLVHWRSERRNLPE-IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~-~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
+++++|+++.+.. ..+|. .+..+++|++|+++++.+... ..+..+++|++|+++++.+..-. ...+..+++|++
T Consensus 37 ~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~ 113 (270)
T 2o6q_A 37 ADTKKLDLQSNKL--SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE 113 (270)
T ss_dssp TTCSEEECCSSCC--SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred CCCCEEECcCCCC--CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence 4788888887543 24454 567799999999999877544 33567999999999998873211 133567899999
Q ss_pred EEeeccCCccee--eccCCCCccEEEEeeC
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
|+++++...... .+..+++|+.|+++++
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 999988543211 2344677777777766
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.95 E-value=1.3e-09 Score=102.01 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=88.9
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC---CCCccCcccceeEee-eEEeCHHHHHHHHcCCCCc
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALR-EVCADDQAIASLISGCPLI 188 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~-~~~~~~~~l~~l~~~~p~L 188 (412)
+++++|+++... ...+|.. +.++++|++|+|+++.+... ..+.++++|+++... ++.+.. .....+..+++|
T Consensus 30 ~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL 106 (350)
T ss_dssp TTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred CCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence 356666666532 2245543 34566666666666643221 233455555443332 222211 001223456666
Q ss_pred cEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEEe-----cCcccEEEeeeeeccceEEeccCCCCCcEEEeec
Q 015171 189 EYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIK-----TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDF 261 (412)
Q Consensus 189 e~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~~-----~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (412)
+.|+++++...... ......++..|.+.++..+..+... ...++.|+++++....+.......++|+.|.+.+
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTT
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhcc
Confidence 66666665432111 1112234555555555444444321 1245556665554222222222334556666643
Q ss_pred c-ccchHHHHHhhcCCCCccEEecccccccccccc-cccccceEEEecCccccee
Q 015171 262 L-PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI-SSPCLKTLILECCDKLIQV 314 (412)
Q Consensus 262 ~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~~ 314 (412)
+ .+.. .....+..+++|+.|+++++ .++.++. .+.+|++|.+.++.+++.+
T Consensus 187 ~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 187 NNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp CTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred CCcccC-CCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence 2 2222 11223445566666666653 3444433 3555666666665555433
No 96
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.89 E-value=8.9e-10 Score=72.25 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.4
Q ss_pred CcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhc
Q 015171 8 EVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVW 46 (412)
Q Consensus 8 ~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw 46 (412)
..+.++.||+|++.+||+||+.+|+++++.|||+|+.+.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999754
No 97
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.89 E-value=7.7e-10 Score=100.66 Aligned_cols=186 Identities=14% Similarity=0.058 Sum_probs=119.4
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
.++++++... ....+|..+. ++++.|+++++.+... ..+..+++|+.|+++++.++.-.. ...+++|++|+
T Consensus 11 ~l~~l~~~~~--~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~ 83 (290)
T 1p9a_G 11 SHLEVNCDKR--NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLD 83 (290)
T ss_dssp TCCEEECTTS--CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEE
T ss_pred CccEEECCCC--CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEE
Confidence 4566655542 2335665543 6788888888766433 346678888888888877632111 15778888888
Q ss_pred eeccCCcce-eeccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccch
Q 015171 193 IRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 193 l~~c~~~~~-~~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (412)
++++....- ..+..+++|+.|+++++ .+..+. ..+++|++|+++++....+.. .+..+++|+.|+++++.+..
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 888754321 12345688888888877 233222 146788999988877322222 35678899999999888775
Q ss_pred HHHHHhhcCCCCccEEecccccccccccc---cccccceEEEecCcc
Q 015171 267 EWLCNGISKLPLLEYLSMTKCHKLTSVRI---SSPCLKTLILECCDK 310 (412)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~ 310 (412)
- ....+..+++|+.|+++++ .++.++. ..++|+.+++.+++.
T Consensus 163 l-~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 L-PAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp C-CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred c-CHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 2 2234567889999999885 3334443 335677887776554
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.88 E-value=3.2e-10 Score=106.63 Aligned_cols=212 Identities=11% Similarity=0.009 Sum_probs=117.7
Q ss_pred cCCCCeeEEEEeceeecCCC------CCccCc-ccceeEeeeEEeCH---HHHHHHHcCC-CCccEEEeeccCCccee--
Q 015171 136 FYVESLHVLELSYCKLQQPS------ENVKLF-SLRKLALREVCADD---QAIASLISGC-PLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~------~~~~l~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~c~~~~~~-- 202 (412)
...++|++|++++|.+.... ....++ +|++|+|+++.+++ ..+...+... ++|++|++++|......
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 33455777777777664431 234556 77777777777733 3344444444 77888888777533211
Q ss_pred ----eccCC-CCccEEEEeeCCCCceEEE--------e-cCcccEEEeeeeecc-----ceEEeccCCC-CCcEEEeecc
Q 015171 203 ----DLVNL-SNLKEIILVNTSDIKRVEI--------K-TSNVNALAIHQTYLF-----PIEVNVSSCG-NLKCLKFDFL 262 (412)
Q Consensus 203 ----~i~~l-~~L~~L~i~~c~~l~~~~~--------~-~p~L~~L~l~~~~~~-----~~~~~~~~~~-~L~~L~l~~~ 262 (412)
.+..+ ++|+.|++++|. +..... . .++|++|+++++... .+...+...+ +|++|++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 12233 678888887772 222211 1 247788887776621 1111223344 7888888777
Q ss_pred ccchH---HHHHhhcCCC-CccEEecccccccc----cccc----cccccceEEEecCcccc-------eeeccCCCeee
Q 015171 263 PIEDE---WLCNGISKLP-LLEYLSMTKCHKLT----SVRI----SSPCLKTLILECCDKLI-------QVEIETPNLSI 323 (412)
Q Consensus 263 ~~~~~---~~~~~~~~~~-~L~~L~l~~c~~l~----~l~~----~~~~L~~L~l~~c~~l~-------~~~~~~~~L~~ 323 (412)
.+.+. .+...+..++ +|+.|+++++.-.. .++. ..++|+.|++++|..-. ......++|+.
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 76542 2333445553 78888887753211 1221 23477888887765421 11234567777
Q ss_pred EEEeccee------------eecccccccceEEEEEe
Q 015171 324 FKYHGDLI------------SFSSNALSLSETSLCFS 348 (412)
Q Consensus 324 l~~~~~~~------------~~l~~~~~L~~l~i~~~ 348 (412)
+.+.++.. ..+.+.++|+.++++.+
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 77777651 23445666777776554
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=9e-10 Score=98.72 Aligned_cols=142 Identities=16% Similarity=0.224 Sum_probs=71.2
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
..+++|++|+++++.+...+....+++|+.|+++++.+++-. . +..+++|++|++++|....--.+.. ++|+.|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCccCCcCcccc-CcccEEEc
Confidence 345666666666665554445556666666666666552211 1 4566666666666664322111112 45555555
Q ss_pred eeCCCCceEE--EecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 216 VNTSDIKRVE--IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 216 ~~c~~l~~~~--~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++| .+..+. ..+++|+.|+++++..... ..+..+++|+.|+++++.+.+. ..+..+++|+.|++++
T Consensus 114 ~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 114 DNN-ELRDTDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CSS-CCSBSGGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEE
T ss_pred cCC-ccCCChhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCC
Confidence 554 111110 1234455555554441111 1345556666666666655542 2344556666666655
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.85 E-value=1.7e-09 Score=96.16 Aligned_cols=98 Identities=16% Similarity=0.064 Sum_probs=56.3
Q ss_pred ceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 116 VKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 116 l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.+++++.. .....+|..+. +++++|+++++.+... ..+..+++|++|+|+++.+.... ...+..+++|++|++
T Consensus 16 ~~~l~~~~--~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQG--KSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTT--CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred CeEEecCC--CCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEEC
Confidence 34444433 23345555443 5788888888776543 34567788888888877663211 122456777888888
Q ss_pred eccCCccee--eccCCCCccEEEEeeC
Q 015171 194 RSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
+++...... .+..+++|+.|+++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcccccChhHhcccCCCCEEEcCCC
Confidence 776543211 1233456666666554
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.85 E-value=3.4e-09 Score=105.09 Aligned_cols=176 Identities=16% Similarity=0.118 Sum_probs=117.2
Q ss_pred hCCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEE
Q 015171 113 ESEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLE 192 (412)
Q Consensus 113 ~~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~ 192 (412)
..+++.|+++.+... .+|..++ ++|++|+++++.+...+ ..+++|+.|+++++.++. +.. +. .+|+.|+
T Consensus 58 ~~~L~~L~Ls~n~L~--~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~--~~L~~L~ 126 (571)
T 3cvr_A 58 INQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LP--ASLKHLD 126 (571)
T ss_dssp HTTCSEEECCSSCCS--CCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEE
T ss_pred cCCccEEEeCCCCCC--ccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hh--cCCCEEE
Confidence 458889988875433 4776553 78999999998876444 668899999999887733 222 22 2899999
Q ss_pred eeccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHh
Q 015171 193 IRSCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNG 272 (412)
Q Consensus 193 l~~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (412)
+++|.... +.- .+++|+.|+++++ .+..++...++|+.|+++++....++. +. ++|+.|++++|.+.. ++.
T Consensus 127 Ls~N~l~~-lp~-~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~--lp~- 197 (571)
T 3cvr_A 127 VDNNQLTM-LPE-LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLES--LPA- 197 (571)
T ss_dssp CCSSCCSC-CCC-CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSS--CCC-
T ss_pred CCCCcCCC-CCC-cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCc--hhh-
Confidence 98885433 222 4678999999887 233333356789999998887333333 33 789999998888764 222
Q ss_pred hcCCCCc-------cEEecccccccccccc---cccccceEEEecCccc
Q 015171 273 ISKLPLL-------EYLSMTKCHKLTSVRI---SSPCLKTLILECCDKL 311 (412)
Q Consensus 273 ~~~~~~L-------~~L~l~~c~~l~~l~~---~~~~L~~L~l~~c~~l 311 (412)
+.. +| +.|+++++ .++.++. ..++|+.|++++++..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC----------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred HHH--hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCC
Confidence 221 55 88888875 3334433 3678888888887663
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.82 E-value=7e-10 Score=99.44 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=115.9
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeC
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNT 218 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c 218 (412)
.+++.++++++.+...+....+++|+.|+++++.++.- . -+..+++|++|++++|.......+..+++|+.|+++++
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence 34555555555554334567889999999999887322 2 25778999999999986543323667899999999988
Q ss_pred --CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc--
Q 015171 219 --SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR-- 294 (412)
Q Consensus 219 --~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-- 294 (412)
..+..+.. ++|+.|+++++..... ..+..+++|+.|+++++.+.+- . .+..+++|+.|+++++.. ..+.
T Consensus 96 ~l~~l~~~~~--~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i-~~~~~l 168 (263)
T 1xeu_A 96 RLKNLNGIPS--ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEI-TNTGGL 168 (263)
T ss_dssp CCSCCTTCCC--SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCC-CBCTTS
T ss_pred ccCCcCcccc--CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcC-cchHHh
Confidence 33332222 8999999999873332 2578899999999999988773 2 467789999999998632 2222
Q ss_pred ccccccceEEEecCcc
Q 015171 295 ISSPCLKTLILECCDK 310 (412)
Q Consensus 295 ~~~~~L~~L~l~~c~~ 310 (412)
..+++|+.|++++++.
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 2567899999988754
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.80 E-value=1.1e-09 Score=91.00 Aligned_cols=128 Identities=20% Similarity=0.159 Sum_probs=68.6
Q ss_pred CCeeEEEEeceeec--CC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEE
Q 015171 139 ESLHVLELSYCKLQ--QP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIIL 215 (412)
Q Consensus 139 ~~L~~L~L~~~~~~--~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i 215 (412)
++|++|++++|.+. .. .....+++|+.|+++++.+... ..+..+++|++|++++|.....+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~------------- 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGL------------- 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCC-------------
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHH-------------
Confidence 56777777777664 22 3345667777777776655322 22445555555555555332211
Q ss_pred eeCCCCceEEEecCcccEEEeeeeeccce--EEeccCCCCCcEEEeeccccchHHH--HHhhcCCCCccEEeccccc
Q 015171 216 VNTSDIKRVEIKTSNVNALAIHQTYLFPI--EVNVSSCGNLKCLKFDFLPIEDEWL--CNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 216 ~~c~~l~~~~~~~p~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~c~ 288 (412)
..+...+++|++|+++++....+ ...+..+++|+.|+++++.+..... ...+..+++|+.|++.+|.
T Consensus 88 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 88 ------DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp ------CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ------HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 00001234444555444441111 1345667778888887777655211 1345667778888777753
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.78 E-value=1.1e-08 Score=95.60 Aligned_cols=215 Identities=17% Similarity=0.168 Sum_probs=138.6
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
...++|..+ .+++++|+|+++.+... ..+.++++|++|+|+++.+....-...+.++++|.++.+.++..+..+
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 344667655 36899999999877543 346789999999999986521111123467788887766666555554
Q ss_pred -eccCCCCccEEEEeeCCCCceEE----EecCcccEEEeeeeec-cceE-EeccCC-CCCcEEEeeccccchHHHHHhhc
Q 015171 203 -DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALAIHQTYL-FPIE-VNVSSC-GNLKCLKFDFLPIEDEWLCNGIS 274 (412)
Q Consensus 203 -~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~l~~~~~-~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~ 274 (412)
.+..+++|+.|++.++ .+..+. ....++..+.+.++.. ..+. ..+..+ ..++.|+++++.+.. +...+.
T Consensus 98 ~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~--i~~~~f 174 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNSAF 174 (350)
T ss_dssp TSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTSS
T ss_pred hhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC--CChhhc
Confidence 2455789999999887 222221 2345667777765431 1111 123333 468889999888765 333333
Q ss_pred CCCCccEEecccccccccccc----cccccceEEEecCcccceeec-cCCCeeeEEEeccee----eecccccccceEEE
Q 015171 275 KLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVEI-ETPNLSIFKYHGDLI----SFSSNALSLSETSL 345 (412)
Q Consensus 275 ~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~~-~~~~L~~l~~~~~~~----~~l~~~~~L~~l~i 345 (412)
...+|+.|.+.++..++.++. ..++|+.|+++++. +..++. ...+|+.|...+... ..+.++++|+.+.+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l 253 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASL 253 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEEC
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcC
Confidence 456899999988777777764 45789999999874 434432 355677777665543 44567778888887
Q ss_pred EE
Q 015171 346 CF 347 (412)
Q Consensus 346 ~~ 347 (412)
..
T Consensus 254 ~~ 255 (350)
T 4ay9_X 254 TY 255 (350)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.75 E-value=3.9e-09 Score=93.81 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEe
Q 015171 139 ESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILV 216 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~ 216 (412)
.+.+++++++..+...+.. -.++|+.|+|+++.+..... ..+..+++|++|+++++...... .+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSD-ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCH-hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567788888766543322 22689999999887732211 22567899999999887543221 13446777777777
Q ss_pred eCCCCceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 217 NTSDIKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 217 ~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++ .+..+. ..+++|++|+++++....+.. .+..+++|++|+++++.+... ....+..+++|+.|++++
T Consensus 92 ~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 92 NN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp TS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCcCCCEEECCC
Confidence 65 222221 123455555555554211111 134455555555555544431 111233445555555554
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.74 E-value=6.8e-10 Score=90.28 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=25.6
Q ss_pred CCeeEEEEeceeec---CCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeecc
Q 015171 139 ESLHVLELSYCKLQ---QPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSC 196 (412)
Q Consensus 139 ~~L~~L~L~~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c 196 (412)
++|++|++++|.+. .+.....+++|+.|+++++.+... ..+..+++|++|++++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n 74 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN 74 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence 45666666666554 112334555555555555544221 22334444444444444
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.70 E-value=1.5e-08 Score=102.20 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=77.6
Q ss_pred cCcccEEEeeeeec-cceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccc-c---ccccccce
Q 015171 228 TSNVNALAIHQTYL-FPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSV-R---ISSPCLKT 302 (412)
Q Consensus 228 ~p~L~~L~l~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~---~~~~~L~~ 302 (412)
.++++.++++.+.. ......+..+++|+.|+++++.......+..+..+++|+.|+++++. ++.+ + ...++|+.
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcChHHHcCCCCCCE
Confidence 34555555555441 11112345567777777777664443333445667788888888763 3332 2 24567888
Q ss_pred EEEecCcccc---eeeccCCCeeeEEEeccee-----eecccc-cccceEEEEEeccchh-hHHHHHHHHH
Q 015171 303 LILECCDKLI---QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSLCFSSHLMV-NIEWVVEYFE 363 (412)
Q Consensus 303 L~l~~c~~l~---~~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i~~~~~~~~-~~~~~~~~~~ 363 (412)
|+|+++.... .....+++|+.|.+.+... ..+.+. ++|+.|.+..+.-.|. ...|+.+.++
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~ 593 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 593 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHH
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHH
Confidence 8887764321 1123456778887776654 344454 6799999877644443 4456655544
No 108
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.69 E-value=6e-09 Score=86.48 Aligned_cols=104 Identities=26% Similarity=0.221 Sum_probs=77.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|+.|+++++.+... +...+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEec
Confidence 479999998865443478888888999999999999876666778899999999999988432 4445667999999999
Q ss_pred eccCCcce---eeccCCCCccEEEEeeC
Q 015171 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~---~~i~~l~~L~~L~i~~c 218 (412)
++|..... -.+..+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 99854321 12334556666666554
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.67 E-value=1e-08 Score=88.35 Aligned_cols=87 Identities=20% Similarity=0.159 Sum_probs=50.2
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i 204 (412)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.+..- ....+..+++|++|++++|...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3455433 35788888888766543 2345778888888877766311 1122456777788877776432111 12
Q ss_pred cCCCCccEEEEeeC
Q 015171 205 VNLSNLKEIILVNT 218 (412)
Q Consensus 205 ~~l~~L~~L~i~~c 218 (412)
..+++|+.|+++++
T Consensus 97 ~~l~~L~~L~L~~N 110 (208)
T 2o6s_A 97 DKLTQLKELALNTN 110 (208)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCccCCCEEEcCCC
Confidence 33456666666554
No 110
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.66 E-value=2.8e-08 Score=82.12 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=73.6
Q ss_pred cccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEe-CHHHHHHHHcC---CCCccEEEeeccCCcce
Q 015171 128 RRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA-DDQAIASLISG---CPLIEYLEIRSCEGLES 201 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~-~~~~l~~l~~~---~p~Le~L~l~~c~~~~~ 201 (412)
...+|.....-..|++|++++|.+... .....|++|++|+|++|.. +|.++..+... |++|++|+|++|..+++
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 446666444456799999999986443 3456899999999999974 99999987763 68999999999988764
Q ss_pred e---eccCCCCccEEEEeeCCCCce
Q 015171 202 L---DLVNLSNLKEIILVNTSDIKR 223 (412)
Q Consensus 202 ~---~i~~l~~L~~L~i~~c~~l~~ 223 (412)
- .+..+++|++|++++|+.++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 3 244578999999999866654
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.62 E-value=5.7e-09 Score=84.75 Aligned_cols=104 Identities=30% Similarity=0.310 Sum_probs=78.6
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
+++++|+++.+......+|..+..+++|++|++++|.+........+++|++|+++++.+... +...+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEEC
Confidence 478999988765443478888888999999999999887666778899999999999988432 4455667999999999
Q ss_pred eccCCcce---eeccCCCCccEEEEeeC
Q 015171 194 RSCEGLES---LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 194 ~~c~~~~~---~~i~~l~~L~~L~i~~c 218 (412)
++|..... ..+..+++|+.|++++|
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC
Confidence 99864321 22344566666666655
No 112
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=5.9e-09 Score=89.11 Aligned_cols=146 Identities=17% Similarity=0.135 Sum_probs=86.5
Q ss_pred CceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 115 EVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
.++...+.+..+....+|..+..+++|++|+++++.+...+....+++|+.|+++++.+. .+...+..+|+|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECc
Confidence 445555554333444555567778888888888887765556667788888888888774 122233445677777777
Q ss_pred ccCCcceeeccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceE--EeccCCCCCcEEEeeccccchHH----
Q 015171 195 SCEGLESLDLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIE--VNVSSCGNLKCLKFDFLPIEDEW---- 268 (412)
Q Consensus 195 ~c~~~~~~~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~---- 268 (412)
+|....--.+. .+++|+.|+++++...... ..+..+++|++|+++++.+....
T Consensus 102 ~N~l~~l~~~~---------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 160 (198)
T 1ds9_A 102 YNQIASLSGIE---------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN 160 (198)
T ss_dssp EEECCCHHHHH---------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT
T ss_pred CCcCCcCCccc---------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc
Confidence 66321100111 2445556666555422111 24567888888888887765431
Q ss_pred -----HHHhhcCCCCccEEe
Q 015171 269 -----LCNGISKLPLLEYLS 283 (412)
Q Consensus 269 -----~~~~~~~~~~L~~L~ 283 (412)
....+..+++|+.|+
T Consensus 161 ~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 161 ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp THHHHHHHHHHHCSSCSEEC
T ss_pred chHHHHHHHHHhCCCcEEEC
Confidence 123456678888876
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.55 E-value=4.9e-08 Score=96.78 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=113.0
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
++++.|+++.+... .+| ..+++|++|++++|.+...+... .+|+.|+++++.++. +.. .+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~l~--~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPELP--ASLKHLDVDNNQLTM--LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSC--CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcchhh--cCCCEEECCCCcCCC--CCC---cCccccEEeC
Confidence 57999999875443 566 34789999999999876543322 299999999998743 222 6899999999
Q ss_pred eccCCcceeeccCCCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCC-------cEEEeecccc
Q 015171 194 RSCEGLESLDLVNLSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNL-------KCLKFDFLPI 264 (412)
Q Consensus 194 ~~c~~~~~~~i~~l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~ 264 (412)
++|.... +.- .+++|+.|++++| ..+.. +. ++|+.|+++++....++. +.. +| +.|++++|.+
T Consensus 148 s~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 148 DNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp CSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCC
T ss_pred CCCccCc-CCC-cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcc
Confidence 9986432 222 3589999999998 33333 22 899999999987333333 332 66 9999999988
Q ss_pred chHHHHHhhcCCCCccEEeccccccccccc
Q 015171 265 EDEWLCNGISKLPLLEYLSMTKCHKLTSVR 294 (412)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 294 (412)
.. ++..+..+++|+.|++++++....++
T Consensus 220 ~~--lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 220 TH--IPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--CCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ee--cCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 75 44445569999999999975444443
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.53 E-value=1.3e-08 Score=87.69 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=90.8
Q ss_pred EEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCC
Q 015171 143 VLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSD 220 (412)
Q Consensus 143 ~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~ 220 (412)
.++.++..+...+ ..-.++|++|+++++.++.. ....+..+++|++|+++++...... .+..+++|+.|+++++ .
T Consensus 11 ~v~c~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVP-TGIPAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-Q 87 (208)
T ss_dssp EEECCSSCCSSCC-SCCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EEEecCCCccCCC-CCCCCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-c
Confidence 3444444433222 23356899999999877421 1223567899999999987543211 1345688888888877 2
Q ss_pred CceEE----EecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc
Q 015171 221 IKRVE----IKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI 295 (412)
Q Consensus 221 l~~~~----~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~ 295 (412)
+..+. ...++|++|+++++....... .+..+++|++|+++++.+... ....+..+++|+.|++++++-. .
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~----~ 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWD----C 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBC----C
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCee----c
Confidence 22222 135677777777665222111 245667777777777666541 2223455677777777764221 2
Q ss_pred cccccceEEEecCc
Q 015171 296 SSPCLKTLILECCD 309 (412)
Q Consensus 296 ~~~~L~~L~l~~c~ 309 (412)
.+++|+.|+++.+.
T Consensus 163 ~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 163 TCPGIRYLSEWINK 176 (208)
T ss_dssp CTTTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 33455555554443
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.52 E-value=2.3e-08 Score=83.68 Aligned_cols=126 Identities=13% Similarity=0.076 Sum_probs=60.4
Q ss_pred cCCCCeeEEEEeceeecCCCCCccCc-ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEE
Q 015171 136 FYVESLHVLELSYCKLQQPSENVKLF-SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEII 214 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~ 214 (412)
.++.+|++|+++++.+...+....+. +|+.|+++++.++.- ..+..+++|++|++++|..
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l---------------- 76 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRI---------------- 76 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCC----------------
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcc----------------
Confidence 44667777777777655333333333 566666665544221 1233444444444444422
Q ss_pred EeeCCCCceEE----EecCcccEEEeeeeeccceEE--eccCCCCCcEEEeeccccchH--HHHHhhcCCCCccEEeccc
Q 015171 215 LVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEV--NVSSCGNLKCLKFDFLPIEDE--WLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 215 i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~ 286 (412)
..+. ..+++|++|+++++....+.. .+..+++|+.|+++++.+... .....+..+++|+.|++++
T Consensus 77 -------~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 77 -------CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -------CEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred -------cccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 1111 123444444444443111111 345566677777766665431 0111345566677776665
Q ss_pred c
Q 015171 287 C 287 (412)
Q Consensus 287 c 287 (412)
+
T Consensus 150 n 150 (176)
T 1a9n_A 150 V 150 (176)
T ss_dssp C
T ss_pred C
Confidence 4
No 116
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=6e-08 Score=90.66 Aligned_cols=131 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred HHHHHHcCCCCccEEEeeccCCcceeeccCCCCccEEEEeeCCC----CceEE-EecCcccEEEeeeee----ccc-e--
Q 015171 177 AIASLISGCPLIEYLEIRSCEGLESLDLVNLSNLKEIILVNTSD----IKRVE-IKTSNVNALAIHQTY----LFP-I-- 244 (412)
Q Consensus 177 ~l~~l~~~~p~Le~L~l~~c~~~~~~~i~~l~~L~~L~i~~c~~----l~~~~-~~~p~L~~L~l~~~~----~~~-~-- 244 (412)
.+..++..+|+|++|.|+++.......+. +++|++|++..|.- +..+. ..+|+|++|+++... ... .
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 35567888999999999987443222232 58999999987721 11111 157999999986321 010 0
Q ss_pred ---EEeccCCCCCcEEEeeccccchHHHHHhh--cCCCCccEEeccccccccc-----cc---ccccccceEEEecCc
Q 015171 245 ---EVNVSSCGNLKCLKFDFLPIEDEWLCNGI--SKLPLLEYLSMTKCHKLTS-----VR---ISSPCLKTLILECCD 309 (412)
Q Consensus 245 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-----l~---~~~~~L~~L~l~~c~ 309 (412)
......+|+|++|++.++.+.+.....++ ..+|+|++|+|+.+ .++. +. ..+++|+.|++++|.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 11123589999999998888764433333 35788999999764 3332 22 135778888887764
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.48 E-value=7.8e-08 Score=84.11 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.+..-. ...+..+++|+.|++++|......
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChh
Confidence 3445565443 7788888888776543 34567788888888887762111 122456777888888777432111
Q ss_pred eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEE
Q 015171 203 DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYL 282 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 282 (412)
.+..+++|+.|+++++ ....++..+..+++|+.|+++++.+..- ....+..+++|+.|
T Consensus 107 ~~~~l~~L~~L~Ls~N---------------------~l~~lp~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN---------------------KLTELPRGIERLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHA 164 (229)
T ss_dssp TTTTCTTCCEEECCSS---------------------CCCSCCTTGGGCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred HhCcchhhCeEeccCC---------------------cccccCcccccCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEE
Confidence 1233455555555544 3112222344556666666666655431 11234455666666
Q ss_pred eccc
Q 015171 283 SMTK 286 (412)
Q Consensus 283 ~l~~ 286 (412)
++.+
T Consensus 165 ~l~~ 168 (229)
T 3e6j_A 165 YLFG 168 (229)
T ss_dssp ECTT
T ss_pred EeeC
Confidence 6665
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.46 E-value=5.3e-08 Score=98.20 Aligned_cols=210 Identities=16% Similarity=0.102 Sum_probs=126.9
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC----CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCcc
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP----SENVKLFSLRKLALREVCADDQAIASLISGCPLIE 189 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le 189 (412)
..++.+.+...... -+.....+++|+.|+++.+.+... .....+.+|+.|++..+.... ....+..++.|+
T Consensus 349 ~~L~~l~l~~n~~~---~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~ 423 (635)
T 4g8a_A 349 KSLKRLTFTSNKGG---NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLE 423 (635)
T ss_dssp TTCCEEEEESCCSC---CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCC
T ss_pred hhhhhcccccccCC---CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc--cccccccccccc
Confidence 46777777763221 122334678899999988654321 233456788888887665411 111245678888
Q ss_pred EEEeeccCCccee---eccCCCCccEEEEeeCCCCceE----EEecCcccEEEeeeee--ccceEEeccCCCCCcEEEee
Q 015171 190 YLEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRV----EIKTSNVNALAIHQTY--LFPIEVNVSSCGNLKCLKFD 260 (412)
Q Consensus 190 ~L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~----~~~~p~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~ 260 (412)
.+.+..+...... .+..+++++.++++.+ .+..+ ....++|+.|+++++. ....+..+..+++|++|+++
T Consensus 424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp EEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred chhhhhcccccccccccccccccccccccccc-ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 8888766443221 2334567777777665 11111 1135678888888775 22223456778888899998
Q ss_pred ccccchHHHHHhhcCCCCccEEeccccccccccc----ccccccceEEEecCcccceee---ccC-CCeeeEEEeccee
Q 015171 261 FLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR----ISSPCLKTLILECCDKLIQVE---IET-PNLSIFKYHGDLI 331 (412)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~~---~~~-~~L~~l~~~~~~~ 331 (412)
++.+... .+..+.++++|+.|+|+++. ++.++ ...++|+.|+++++......+ ... ++|+.+.+.+.+.
T Consensus 503 ~N~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 503 QCQLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TSCCCEE-CTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCccCCc-ChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8877652 23446678888999888853 33332 245788888888876532211 122 4688888777543
No 119
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.46 E-value=3.5e-07 Score=85.40 Aligned_cols=185 Identities=14% Similarity=0.090 Sum_probs=105.5
Q ss_pred CCceeEEEEEecCCCC--CChhhHHHHHHH-HHhCCceEEEEEeCCCc--------cccCCccccCCCCeeEEEEecee-
Q 015171 83 ISIKKFSLELDLINSP--ENASLAGRCLGL-AIESEVKELVLVHWRSE--------RRNLPEIIFYVESLHVLELSYCK- 150 (412)
Q Consensus 83 ~~l~~l~l~~~~~~~~--~~~~~~~~~l~~-~~~~~l~~L~l~~~~~~--------~~~lp~~~~~~~~L~~L~L~~~~- 150 (412)
..++.+.+.... ++ .....+..+... ...++++.|.+...... ...+...+..+++|++|.|+++.
T Consensus 107 ~~v~~L~lg~~~--~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 107 PSLKQITIGXWG--YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGCSEEEECCCC--SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred hhcceEEEcccc--cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 356666655332 11 111234444432 23469999988652111 11244445678999999998873
Q ss_pred ecCCCCCccCcccceeEeeeEEeCHHHHHHHHc-CCCCccEEEeeccCCc--ce---------eeccCCCCccEEEEeeC
Q 015171 151 LQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGL--ES---------LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 151 ~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~--~~---------~~i~~l~~L~~L~i~~c 218 (412)
...++ ...++|++|+|..+.++++.+..+.. .+|+|+.|.|..+... .. +....+|+|+.|.+.+|
T Consensus 185 l~l~~--~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 185 LSIGK--KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp CBCCS--CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred ceecc--ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 33222 34899999999988888888877653 7999999998642111 11 11112455666655544
Q ss_pred CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccccc
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCH 288 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~ 288 (412)
...... .......+.+|+|++|+|+.+.+.+.....+. ..+++|+.|+++.|.
T Consensus 263 ~i~~~~-----------------~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 263 EEQNVV-----------------VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTHHHH-----------------HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCchHH-----------------HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 111000 00001113467888888887777775443332 446788888887763
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.42 E-value=3.5e-08 Score=82.55 Aligned_cols=129 Identities=12% Similarity=0.114 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEe
Q 015171 114 SEVKELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEI 193 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l 193 (412)
.++++|+++.+... .+|......++|++|+++++.+........+++|++|+++++.++.- ...++..+|+|++|++
T Consensus 19 ~~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 19 VRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL 95 (176)
T ss_dssp TSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred CCceEEEeeCCCCc--hhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEEC
Confidence 47899988875443 44543333459999999999776556778899999999999988421 1123467899999999
Q ss_pred eccCCccee---eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE----eccCCCCCcEEEeeccccch
Q 015171 194 RSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV----NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 194 ~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~ 266 (412)
++|.....- .+..+++|+.|++++ +.....+. .+..+++|+.|+++.+....
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~---------------------N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILR---------------------NPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCS---------------------SGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecC---------------------CCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 988542111 122345555555544 43111111 25678889999988877655
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.41 E-value=6.7e-08 Score=83.96 Aligned_cols=87 Identities=20% Similarity=0.166 Sum_probs=46.9
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
..+|..+. +.+++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+..+++|++|+++++...... .
T Consensus 24 ~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCccCccCHhH
Confidence 34565442 4567788877765432 22556777777777776653211 112455667777777766432211 1
Q ss_pred ccCCCCccEEEEeeC
Q 015171 204 LVNLSNLKEIILVNT 218 (412)
Q Consensus 204 i~~l~~L~~L~i~~c 218 (412)
+..+++|+.|+++++
T Consensus 101 ~~~l~~L~~L~Ls~N 115 (220)
T 2v70_A 101 FKGLESLKTLMLRSN 115 (220)
T ss_dssp GTTCSSCCEEECTTS
T ss_pred hcCCcCCCEEECCCC
Confidence 333455555555544
No 122
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.40 E-value=1.3e-07 Score=82.11 Aligned_cols=89 Identities=15% Similarity=0.128 Sum_probs=52.4
Q ss_pred ccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 127 ERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 127 ~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
....+|..+. ++|++|+++++.+... ..+..+++|+.|+|+++.+.... ...+.++++|++|+++++....-.
T Consensus 22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHh
Confidence 3345565443 6788888888766432 35667788888888877663211 122456778888888777432111
Q ss_pred eccCCCCccEEEEeeC
Q 015171 203 DLVNLSNLKEIILVNT 218 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c 218 (412)
.+..+++|+.|+++++
T Consensus 99 ~f~~l~~L~~L~L~~N 114 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNAN 114 (220)
T ss_dssp TTTTCTTCCEEECCSS
T ss_pred HccCCCCCCEEECCCC
Confidence 1233456666666554
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.37 E-value=1.4e-07 Score=82.51 Aligned_cols=142 Identities=15% Similarity=0.065 Sum_probs=88.9
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcceee---ccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESLD---LVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~~---i~~l~~L~~L~i~~c 218 (412)
+.++.++..+...+. .-.++|+.|+|+++.+.... ...+..+++|++|+++++.. ..+. +..+++|+.|++
T Consensus 22 ~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~L--- 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL--- 95 (229)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC---
T ss_pred CEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEEC---
Confidence 456665555543322 22378888888888773211 12345678888888887754 2221 223444555544
Q ss_pred CCCceEEEecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccccccccc---
Q 015171 219 SDIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVR--- 294 (412)
Q Consensus 219 ~~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--- 294 (412)
+++....+. ..+..+++|+.|+++++.+.. ++..+..+++|+.|+++++ .+..++
T Consensus 96 ------------------s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~~~ 154 (229)
T 3e6j_A 96 ------------------GTNQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQN-QLKSIPHGA 154 (229)
T ss_dssp ------------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred ------------------CCCcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCC-cCCccCHHH
Confidence 444311111 235678999999999999874 4445678899999999985 334443
Q ss_pred -ccccccceEEEecCcc
Q 015171 295 -ISSPCLKTLILECCDK 310 (412)
Q Consensus 295 -~~~~~L~~L~l~~c~~ 310 (412)
...++|+.|++.+++.
T Consensus 155 ~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTCTTCCEEECTTSCB
T ss_pred HhCCCCCCEEEeeCCCc
Confidence 2467899999988654
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.36 E-value=2.4e-07 Score=86.84 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCeeEEEEeceeecCC--CCCc-cCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEE
Q 015171 139 ESLHVLELSYCKLQQP--SENV-KLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEI 213 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~--~~~~-~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L 213 (412)
+.++.|+|+++.+... ..+. .+++|+.|+|+++.+..-. ...+..+++|++|+|++|...... .+..+++|+.|
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3466666666654322 2222 5666666666666552111 112345666666666666432111 13345666666
Q ss_pred EEeeCCCCceEE----EecCcccEEEeeeeeccceEEec----cCCCCCcEEEeeccccchHHHHHhhcCCCC--ccEEe
Q 015171 214 ILVNTSDIKRVE----IKTSNVNALAIHQTYLFPIEVNV----SSCGNLKCLKFDFLPIEDEWLCNGISKLPL--LEYLS 283 (412)
Q Consensus 214 ~i~~c~~l~~~~----~~~p~L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~ 283 (412)
+++++ .+..+. ..+++|+.|+++++....+.... ..+++|+.|+++++.+..-. ...+..+++ ++.|+
T Consensus 118 ~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC-HHHHHHSCHHHHTTEE
T ss_pred ECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC-HHHhhhccHhhcceEE
Confidence 66655 222221 13456666666665522211111 34666777777666655411 112233443 35566
Q ss_pred ccc
Q 015171 284 MTK 286 (412)
Q Consensus 284 l~~ 286 (412)
+.+
T Consensus 196 l~~ 198 (361)
T 2xot_A 196 LHN 198 (361)
T ss_dssp CCS
T ss_pred ecC
Confidence 655
No 125
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.35 E-value=1.2e-08 Score=96.06 Aligned_cols=87 Identities=18% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHhCCceEEEEEeCCCccc---cCCcccc-CCCCeeEEEEeceeecCC---CCCccCcccceeEeeeEEeCHHHHHHHH-
Q 015171 111 AIESEVKELVLVHWRSERR---NLPEIIF-YVESLHVLELSYCKLQQP---SENVKLFSLRKLALREVCADDQAIASLI- 182 (412)
Q Consensus 111 ~~~~~l~~L~l~~~~~~~~---~lp~~~~-~~~~L~~L~L~~~~~~~~---~~~~~l~~L~~L~L~~~~~~~~~l~~l~- 182 (412)
.+.+.+++|+++.+..... .+...+. .+++|++|+|++|.+... .....+++|+.|+|++|.+++.+...+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 3445677777665432211 1111112 225666666666655322 2223455666666666666554443322
Q ss_pred ---cCCCCccEEEeeccC
Q 015171 183 ---SGCPLIEYLEIRSCE 197 (412)
Q Consensus 183 ---~~~p~Le~L~l~~c~ 197 (412)
..++.|++|++++|.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHHSTTCCCCEEECCSSC
T ss_pred HHHhcCCccceeeCCCCC
Confidence 245566666666653
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.33 E-value=1.9e-07 Score=81.06 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=53.4
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEE----EecCcccEEE
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVE----IKTSNVNALA 235 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~----~~~p~L~~L~ 235 (412)
.++.|+|+++.++.......+..+++|++|+++++...... .+..+++|+.|+++++ .+..+. ..+++|++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEE
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEE
Confidence 44555555554422111112344555555555555322111 1333455555555554 111111 1245555555
Q ss_pred eeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 236 IHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 236 l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++++..... ...+..+++|+.|+++++.+... .+..+..+++|+.|++++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCTTCCEEECCS
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCCCCCEEEecC
Confidence 555541111 12344555555555555554431 122334455555555555
No 127
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.32 E-value=2.9e-08 Score=84.73 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=43.4
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
+++|+.|+++++....+. .+..+++|+.|+++++.+........+..+++|+.|++++++
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 467888888877633222 466788999999998888763322346778999999998864
No 128
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=5.7e-07 Score=74.26 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=53.2
Q ss_pred cccEEEeeeee-ccceEEeccCCCCCcEEEeeccc-cchHHHHHhhcC---CCCccEEecccccccccccc----ccccc
Q 015171 230 NVNALAIHQTY-LFPIEVNVSSCGNLKCLKFDFLP-IEDEWLCNGISK---LPLLEYLSMTKCHKLTSVRI----SSPCL 300 (412)
Q Consensus 230 ~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~c~~l~~l~~----~~~~L 300 (412)
+|+.|+++++. .+.....+.+|++|++|+|++|. +++..+..+... +++|++|+|++|..+++-.. .+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555554 11112234677888888888774 777766665542 45788888888877665322 56788
Q ss_pred ceEEEecCcccc
Q 015171 301 KTLILECCDKLI 312 (412)
Q Consensus 301 ~~L~l~~c~~l~ 312 (412)
++|+|++|+.+.
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 888888887653
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.28 E-value=9.2e-09 Score=102.28 Aligned_cols=170 Identities=18% Similarity=0.129 Sum_probs=110.5
Q ss_pred cCCCCeeEEEEeceeecC-CCCCccCcccceeEeeeEEe------------CHHHHHHHHcCCCCccEEE-eeccCC--c
Q 015171 136 FYVESLHVLELSYCKLQQ-PSENVKLFSLRKLALREVCA------------DDQAIASLISGCPLIEYLE-IRSCEG--L 199 (412)
Q Consensus 136 ~~~~~L~~L~L~~~~~~~-~~~~~~l~~L~~L~L~~~~~------------~~~~l~~l~~~~p~Le~L~-l~~c~~--~ 199 (412)
..+++|+.|+|+++.+.. |...+.|++|+.|+++++.. ........+..+++|+.|+ ++.+.. +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 567889999999887643 25567788888888865531 0112233455667777776 333210 0
Q ss_pred cee-----eccC--CCCccEEEEeeC--CCCceEEEecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchHHHH
Q 015171 200 ESL-----DLVN--LSNLKEIILVNT--SDIKRVEIKTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDEWLC 270 (412)
Q Consensus 200 ~~~-----~i~~--l~~L~~L~i~~c--~~l~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 270 (412)
... .+.. ...|+.|+++++ ..+.. ...+++|+.|+++++....++..++.+++|+.|++++|.+.. ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc
Confidence 000 1111 146888888877 23332 125678899999888744555677889999999999888876 44
Q ss_pred HhhcCCCCccEEecccccccccc--cc---cccccceEEEecCcc
Q 015171 271 NGISKLPLLEYLSMTKCHKLTSV--RI---SSPCLKTLILECCDK 310 (412)
Q Consensus 271 ~~~~~~~~L~~L~l~~c~~l~~l--~~---~~~~L~~L~l~~c~~ 310 (412)
.+..+++|+.|+++++. ++.+ +. .+++|+.|+++++..
T Consensus 503 -~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp -GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred -ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 46778999999998853 3333 22 567889999988764
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.27 E-value=4.2e-07 Score=85.19 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=104.5
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHc-CCCCccEEEeeccCCccee--eccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLIS-GCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c 218 (412)
+.++++++.+...+. .-.+.++.|+|+++.++.-... .+. .+++|+.|++++|...... .+..+++|+.|+++++
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666665544322 2235689999999887432222 233 7899999999988543221 2556789999999887
Q ss_pred CCCceEEE----ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccccccc
Q 015171 219 SDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTKCHKL 290 (412)
Q Consensus 219 ~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~c~~l 290 (412)
.+..+.. .+++|+.|+++++....+ ...+..+++|+.|+++++.+..- ....+ ..+++|+.|+++++ .+
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~~~~l~~L~~L~L~~N-~l 175 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF-PVELIKDGNKLPKLMLLDLSSN-KL 175 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CGGGTC----CTTCCEEECCSS-CC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee-CHHHhcCcccCCcCCEEECCCC-CC
Confidence 3444432 457899999988873222 23467789999999998887651 11222 45789999999884 33
Q ss_pred ccccc----cccc--cceEEEecCcc
Q 015171 291 TSVRI----SSPC--LKTLILECCDK 310 (412)
Q Consensus 291 ~~l~~----~~~~--L~~L~l~~c~~ 310 (412)
+.++. ..+. ++.|++.+++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 44432 2233 47788877543
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.27 E-value=2.4e-07 Score=80.39 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=42.3
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcce--eeccCCCCccEEEEeeC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES--LDLVNLSNLKEIILVNT 218 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~--~~i~~l~~L~~L~i~~c 218 (412)
+.+++++..+...+.. -.++|+.|+++++.+..-. ...+..+++|++|+++++..... -.+..+++|+.|+++++
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3455555554433221 1267888888887763211 11245678888888887754321 12344566777766655
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=1.4e-06 Score=80.50 Aligned_cols=89 Identities=17% Similarity=0.107 Sum_probs=48.9
Q ss_pred CCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccc-eEEEecCccccee----eccCCCe
Q 015171 251 CGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK-TLILECCDKLIQV----EIETPNL 321 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~-~L~l~~c~~l~~~----~~~~~~L 321 (412)
+++|+.+++..+.+..- ....+.+|++|+.+++.+ +++.++. .+++|+ .+++.. .+..+ ...+++|
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccC
Confidence 67777777766554431 123355677777777765 2444433 445566 666655 33222 2345566
Q ss_pred eeEEEeccee-----eecccccccceEE
Q 015171 322 SIFKYHGDLI-----SFSSNALSLSETS 344 (412)
Q Consensus 322 ~~l~~~~~~~-----~~l~~~~~L~~l~ 344 (412)
+.+.+.+... ..+.++++|+++.
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666644332 4555666666654
No 133
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.14 E-value=6.8e-08 Score=90.86 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=99.1
Q ss_pred CCeeEEEEeceeecCC------CC-CccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCcce----e--ec-
Q 015171 139 ESLHVLELSYCKLQQP------SE-NVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLES----L--DL- 204 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~------~~-~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~----~--~i- 204 (412)
++|++|++++|.+... .. ....++|+.|+|++|.+++..+..+...+++|++|++++|..... + .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 5688888888876432 01 123468888888888888877777777777888888888854211 1 11
Q ss_pred cCCCCccEEEEeeCCCCce-----EE---EecCcccEEEeeeeeccc-----eEEeccCCCCCcEEEeeccccchHHHH-
Q 015171 205 VNLSNLKEIILVNTSDIKR-----VE---IKTSNVNALAIHQTYLFP-----IEVNVSSCGNLKCLKFDFLPIEDEWLC- 270 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~-----~~---~~~p~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~- 270 (412)
...++|+.|++++|. +.. +. ...++|++|+++++.... +...+...++|++|++++|.+.+....
T Consensus 152 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 224788888888872 221 11 135788888888876111 122345677899999999988875433
Q ss_pred --HhhcCCCCccEEeccccc
Q 015171 271 --NGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 271 --~~~~~~~~L~~L~l~~c~ 288 (412)
..+...++|++|+++++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 334456889999998864
No 134
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.08 E-value=1.7e-06 Score=77.29 Aligned_cols=37 Identities=35% Similarity=0.666 Sum_probs=34.4
Q ss_pred ccCCCCCHHHHHHHHccCChHHHH-HHhhhhhchhhhc
Q 015171 10 DGISTLPEPILHHILSFLPFKEVA-QTCLLSKRWKQVW 46 (412)
Q Consensus 10 D~is~LPdevl~~Ils~L~~~~~~-~~~~vskrWr~lw 46 (412)
..+..||+|++.+||++||.++++ ++++|||+|+.+.
T Consensus 49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 468899999999999999999999 9999999999863
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=1.3e-06 Score=86.72 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=55.7
Q ss_pred ccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCCCCceEEEecCcccEEEeeee
Q 015171 162 SLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQT 239 (412)
Q Consensus 162 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~ 239 (412)
.|+.|+|+++.++. +.. +..+++|+.|++++|... .+ .+..+++|+.|+++++
T Consensus 442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N--------------------- 496 (567)
T 1dce_A 442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN--------------------- 496 (567)
T ss_dssp TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS---------------------
T ss_pred CceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCC---------------------
Confidence 57788888877632 233 567788888888877442 11 2333455555555443
Q ss_pred eccceEEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccc
Q 015171 240 YLFPIEVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 240 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 287 (412)
....++ .++.+++|+.|++++|.+.....+..+..+++|+.|+++++
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 211112 34556666666666666554211333455666666666654
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.99 E-value=1.6e-06 Score=76.63 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 12 ISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 12 is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
++.||+||+.+||+||+++|+++++.|||+||.+
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999963
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.97 E-value=3.3e-07 Score=93.94 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=27.9
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccchH
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIEDE 267 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 267 (412)
+++|++|+++++....++..+..+++|+.|+|++|.+...
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 4566666666665334445577888899999988887753
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.87 E-value=1.3e-05 Score=67.79 Aligned_cols=113 Identities=19% Similarity=0.153 Sum_probs=61.3
Q ss_pred ccCCccccCCCCeeEEEEeceeecCCC---CCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--e
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQPS---ENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--D 203 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~ 203 (412)
..+|..+.. +|++|+++++.+...+ .+..+++|++|+|+++.++... ...+..+++|++|+++++...... .
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence 456654433 7888888887664432 2567777888887777663211 122455677777777766432211 1
Q ss_pred ccCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccc-eEEeccCCCCCcEEEeeccccc
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFP-IEVNVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 265 (412)
+..+++|+.|++ +++.... .+..+..+++|++|+++++.+.
T Consensus 98 ~~~l~~L~~L~L---------------------~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 98 FLGLHQLKTLNL---------------------YDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp STTCTTCCEEEC---------------------CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred hcCCCCCCEEEC---------------------CCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 222344444444 4333111 1223456677777777766654
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.83 E-value=3.3e-06 Score=86.52 Aligned_cols=105 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred HcCCCCccEEEeeccCCcce-eeccCCCCccEEEEeeCCCCceEE---EecCcccEEEeeeeeccceEEeccCCCCCcEE
Q 015171 182 ISGCPLIEYLEIRSCEGLES-LDLVNLSNLKEIILVNTSDIKRVE---IKTSNVNALAIHQTYLFPIEVNVSSCGNLKCL 257 (412)
Q Consensus 182 ~~~~p~Le~L~l~~c~~~~~-~~i~~l~~L~~L~i~~c~~l~~~~---~~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L 257 (412)
+..++.|+.|+|++|....- -.+..+++|+.|+++++ .+..++ ..+++|+.|+++++....++..+..+++|++|
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 45566667777666643210 01223566777777665 222222 14677888888887744556677889999999
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccc
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHK 289 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 289 (412)
+|++|.+.. ++..+..+++|+.|+|+++..
T Consensus 299 ~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 299 YFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp ECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred ECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence 999998864 444477889999999998643
No 140
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.81 E-value=5.2e-06 Score=80.04 Aligned_cols=42 Identities=26% Similarity=0.547 Sum_probs=37.8
Q ss_pred CCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhhccc
Q 015171 7 LEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQVWQT 48 (412)
Q Consensus 7 ~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~lw~~ 48 (412)
-..|.|+.||+|++.+||+||+.++++++++|||+|+++...
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999999999999976443
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.73 E-value=2.2e-05 Score=66.37 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=48.4
Q ss_pred CCeeEEEEeceeecCC-CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEE
Q 015171 139 ESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIIL 215 (412)
Q Consensus 139 ~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i 215 (412)
++|++|+++++.+... ..+..+++|+.|+|+++.++.-. ...+.++++|++|+++++...... .+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 3555555555544322 23445555666666555552111 111344556666666555322111 1333556666666
Q ss_pred eeCCCCceEEE----ecCcccEEEeeeee
Q 015171 216 VNTSDIKRVEI----KTSNVNALAIHQTY 240 (412)
Q Consensus 216 ~~c~~l~~~~~----~~p~L~~L~l~~~~ 240 (412)
+++ .+..+.. ..++|+.|++.++.
T Consensus 110 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 110 HGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 555 2222211 34677777777665
No 142
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.70 E-value=2.1e-05 Score=65.41 Aligned_cols=114 Identities=19% Similarity=0.119 Sum_probs=63.9
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--ec
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DL 204 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i 204 (412)
..+|..+ .++|++|+++++.+... ..+..+++|++|+++++.++.- ....+..+++|++|+++++...... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCccccCHHHh
Confidence 3455433 25788888888766543 2345677888888877766311 1122356677777777766432111 11
Q ss_pred cCCCCccEEEEeeCCCCceEEEecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccch
Q 015171 205 VNLSNLKEIILVNTSDIKRVEIKTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIED 266 (412)
Q Consensus 205 ~~l~~L~~L~i~~c~~l~~~~~~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~ 266 (412)
..++ +|++|+++++....+.. .+..+++|++|+++++.+..
T Consensus 97 ~~l~---------------------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 97 DKLT---------------------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCT---------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hCCc---------------------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 2234 44444444444111111 24667889999998887654
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.68 E-value=1.5e-05 Score=66.31 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=71.6
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~ 219 (412)
+.++++++.+...+ ....++|+.|+++++.+..- ....+..+++|++|+++++...... .+..+
T Consensus 10 ~~l~~~~~~l~~~p-~~~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l------------ 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVP-TGIPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL------------ 75 (177)
T ss_dssp TEEECCSSCCSSCC-TTCCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC------------
T ss_pred CEEEecCCCCccCC-CCCCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCC------------
Confidence 45666665544322 22346788888887766311 1122456677777777766432110 01223
Q ss_pred CCceEEEecCcccEEEeeeeeccceE-EeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccccc
Q 015171 220 DIKRVEIKTSNVNALAIHQTYLFPIE-VNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCH 288 (412)
Q Consensus 220 ~l~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 288 (412)
++|+.|+++++...... ..+..+++|+.|+++++.+..- ....+..+++|+.|++++++
T Consensus 76 ---------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 76 ---------TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ---------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ---------CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCC
Confidence 44555555544411111 1356789999999999988742 23345678999999999854
No 144
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.63 E-value=3.2e-05 Score=74.18 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=36.8
Q ss_pred cCCcccCCCCCHHHHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 6 VLEVDGISTLPEPILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 6 ~~~~D~is~LPdevl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
....|.++.||+|++.+||+||+.++++++++|||+|+.+
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 3457999999999999999999999999999999999863
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.62 E-value=2.6e-05 Score=65.95 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=78.8
Q ss_pred eEEEEeceeecCCCCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--eccCCCCccEEEEeeCC
Q 015171 142 HVLELSYCKLQQPSENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL--DLVNLSNLKEIILVNTS 219 (412)
Q Consensus 142 ~~L~L~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~--~i~~l~~L~~L~i~~c~ 219 (412)
+.++++++.+...+. .-.++|+.|+++++.++. +...+..+++|+.|+++++...... .+..+++|+.|+++++
T Consensus 13 ~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence 456666655543322 224689999999887742 2234677889999999888543221 2455788999999887
Q ss_pred CCceEEE----ecCcccEEEeeeeeccceEE-eccCCCCCcEEEeeccccc
Q 015171 220 DIKRVEI----KTSNVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLPIE 265 (412)
Q Consensus 220 ~l~~~~~----~~p~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 265 (412)
.+..+.. ..++|+.|+++++....+.. .+..+++|+.|+++++.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 2333321 45789999998887333222 3567889999999877654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=8.4e-05 Score=70.42 Aligned_cols=195 Identities=10% Similarity=0.065 Sum_probs=102.5
Q ss_pred CCeeEEEEeceee-cCCCCCccCcccceeEeeeEEe---CHHHHHHHHcCCCCccEEEeeccCCccee---eccCCCCcc
Q 015171 139 ESLHVLELSYCKL-QQPSENVKLFSLRKLALREVCA---DDQAIASLISGCPLIEYLEIRSCEGLESL---DLVNLSNLK 211 (412)
Q Consensus 139 ~~L~~L~L~~~~~-~~~~~~~~l~~L~~L~L~~~~~---~~~~l~~l~~~~p~Le~L~l~~c~~~~~~---~i~~l~~L~ 211 (412)
.+|+.+.+...-. -....+.+|++|+.+++.++.+ ....+ .|..|+++.+... +..+ .+..|++|+
T Consensus 157 ~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~ 229 (401)
T 4fdw_A 157 STVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVT--LKEIGSQAFLKTSQLK 229 (401)
T ss_dssp CCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTT--CCEECTTTTTTCTTCC
T ss_pred CCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeCCc--hheehhhHhhCCCCCC
Confidence 3566666654211 1114456677777777764433 22221 2567777776532 2222 233466777
Q ss_pred EEEEeeCCCCceEEE---ecCcccEEEeeeeeccceEEeccCCCCCcEEEeeccccch----HHHHHhhcCCCCccEEec
Q 015171 212 EIILVNTSDIKRVEI---KTSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFLPIED----EWLCNGISKLPLLEYLSM 284 (412)
Q Consensus 212 ~L~i~~c~~l~~~~~---~~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l 284 (412)
.+.+.. ++..+.. ...+|+.+.+...-..-....|.+|++|+.+.+.++.... ..-...+.+|++|+.+.+
T Consensus 230 ~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 230 TIEIPE--NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECCT--TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred EEecCC--CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 777754 2333322 1256777777433211112246778889988887655431 011234567888888888
Q ss_pred ccccccccccc----cccccceEEEecCc-ccc-eeeccCCCeeeEEEeccee-----eecccc-cccceEEE
Q 015171 285 TKCHKLTSVRI----SSPCLKTLILECCD-KLI-QVEIETPNLSIFKYHGDLI-----SFSSNA-LSLSETSL 345 (412)
Q Consensus 285 ~~c~~l~~l~~----~~~~L~~L~l~~c~-~l~-~~~~~~~~L~~l~~~~~~~-----~~l~~~-~~L~~l~i 345 (412)
.. .++.++. .+.+|+.++|...- .+. .....+ +|+.+.+.+... ..+..+ ..++++.+
T Consensus 308 ~~--~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 308 PE--SIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp CT--TCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred CC--ceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence 74 3444433 45678888774321 111 122344 677777766543 223333 35666666
No 147
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.55 E-value=1.9e-05 Score=75.66 Aligned_cols=39 Identities=38% Similarity=0.601 Sum_probs=36.1
Q ss_pred CCcccCCCCCHH----HHHHHHccCChHHHHHHhhhhhchhhh
Q 015171 7 LEVDGISTLPEP----ILHHILSFLPFKEVAQTCLLSKRWKQV 45 (412)
Q Consensus 7 ~~~D~is~LPde----vl~~Ils~L~~~~~~~~~~vskrWr~l 45 (412)
-..|.|+.||+| ++.+||+||+.++++++++|||+|+++
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 457999999999 999999999999999999999999953
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.54 E-value=2.8e-05 Score=71.60 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=58.1
Q ss_pred CCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccceEEeccCCCCCc-EEEeeccccchHHHHHhhcCCCCccE
Q 015171 207 LSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPIEVNVSSCGNLK-CLKFDFLPIEDEWLCNGISKLPLLEY 281 (412)
Q Consensus 207 l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~ 281 (412)
+++|+.+++.++ .+..+.. .+++|+++.+..+-..-....|.+|++|+ .+.+.. .+.. .-...+.+|++|+.
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc-cceE-EchhhhhCCccCCE
Confidence 578888888765 3444442 46788888887653111112467888998 999975 3322 11234677899999
Q ss_pred Eecccccccccccc----cccccceEE
Q 015171 282 LSMTKCHKLTSVRI----SSPCLKTLI 304 (412)
Q Consensus 282 L~l~~c~~l~~l~~----~~~~L~~L~ 304 (412)
+++.. ..++.++. .+++|+.++
T Consensus 302 l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCC-CccCccchhhhcCCcchhhhc
Confidence 99865 23444433 456677664
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.52 E-value=4.7e-05 Score=64.25 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=68.8
Q ss_pred CceEEEEEeCCCccccCCc--cccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSERRNLPE--IIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~--~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~ 190 (412)
++++|+++.... ..++. .+..+++|++|+|+++.+... ..+..+++|+.|+|+++.+..... ..+..+++|++
T Consensus 30 ~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~ 106 (192)
T 1w8a_A 30 HTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKT 106 (192)
T ss_dssp TCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCE
T ss_pred CCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCE
Confidence 788888877433 34444 367899999999999987654 457789999999999998843221 22467899999
Q ss_pred EEeeccCCccee--eccCCCCccEEEEee
Q 015171 191 LEIRSCEGLESL--DLVNLSNLKEIILVN 217 (412)
Q Consensus 191 L~l~~c~~~~~~--~i~~l~~L~~L~i~~ 217 (412)
|+++++...... .+..+++|+.|++++
T Consensus 107 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 107 LNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp EECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred EECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 999998653221 233345555555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.35 E-value=5.5e-05 Score=63.43 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=20.0
Q ss_pred cCCCCCcEEEe--eccccchHH---HHHhhcCCCCccEEecccc
Q 015171 249 SSCGNLKCLKF--DFLPIEDEW---LCNGISKLPLLEYLSMTKC 287 (412)
Q Consensus 249 ~~~~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~L~l~~c 287 (412)
...++|++|++ +++.+.+.. +...+...++|++|+++++
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34455666666 555555533 2233334455666666553
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.32 E-value=0.00018 Score=59.28 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=47.6
Q ss_pred eEEEEEeCCCccccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEee
Q 015171 117 KELVLVHWRSERRNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIR 194 (412)
Q Consensus 117 ~~L~l~~~~~~~~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~ 194 (412)
+.++++. .....+|..+. ++|++|+|+++.+... ..+..+++|++|+|+++.+..- ....+..+++|++|+++
T Consensus 12 ~~l~~s~--n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSG--KSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTT--SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CEEEeCC--CCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECC
Confidence 3444443 23345665543 7788888888876544 3456788888888888776311 11224567778888877
Q ss_pred ccCC
Q 015171 195 SCEG 198 (412)
Q Consensus 195 ~c~~ 198 (412)
++..
T Consensus 87 ~N~l 90 (170)
T 3g39_A 87 DNQL 90 (170)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 7643
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.26 E-value=0.00025 Score=58.72 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=41.8
Q ss_pred ccCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccC
Q 015171 129 RNLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCE 197 (412)
Q Consensus 129 ~~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~ 197 (412)
..+|..+. ++|++|+|+++.+... ..+..+++|+.|+|+++.+..- ....+..+++|+.|+++++.
T Consensus 25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence 45665543 6788888888776543 3456777888888877766321 11223566777777777664
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.83 E-value=0.00016 Score=60.48 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHhC--CceEEEEEeC-CCcc---ccCCccccCCCCeeEEEEeceeecCC------CCCccCcccceeEe
Q 015171 101 ASLAGRCLGLAIES--EVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLAL 168 (412)
Q Consensus 101 ~~~~~~~l~~~~~~--~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~L 168 (412)
...+...+..+... .+++|+++.+ .... ..+...+...++|++|+|++|.+... ......++|++|+|
T Consensus 21 ~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp CCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred ccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 34455566555543 5777776654 3221 12222334456677777776655332 11223456677777
Q ss_pred eeEEeCHHHHHHH---HcCCCCccEEEe
Q 015171 169 REVCADDQAIASL---ISGCPLIEYLEI 193 (412)
Q Consensus 169 ~~~~~~~~~l~~l---~~~~p~Le~L~l 193 (412)
+++.+++++...+ +..++.|++|++
T Consensus 101 ~~N~i~~~g~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 101 ESNFISGSGILALVEALQSNTSLIELRI 128 (185)
T ss_dssp CSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred cCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence 7666655553332 345566666666
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.77 E-value=0.0032 Score=59.49 Aligned_cols=197 Identities=12% Similarity=0.154 Sum_probs=118.0
Q ss_pred CceEEEEEeCCCccccCCcc-ccCCCCeeEEEEeceeecCC-CCCccCcccceeEeeeEEe--CHHHHHHHHcCCCCccE
Q 015171 115 EVKELVLVHWRSERRNLPEI-IFYVESLHVLELSYCKLQQP-SENVKLFSLRKLALREVCA--DDQAIASLISGCPLIEY 190 (412)
Q Consensus 115 ~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~~~~~~~-~~~~~l~~L~~L~L~~~~~--~~~~l~~l~~~~p~Le~ 190 (412)
+++++.+.. ....++.. +..|++|+.+++..+.+... .....+.+|+.+.|...-. .. ..+.+|++|++
T Consensus 158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~ 230 (401)
T 4fdw_A 158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT 230 (401)
T ss_dssp CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence 566665543 22334433 45689999999987644322 2333368899998864211 22 22568999999
Q ss_pred EEeeccCCccee---eccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeecc------ceEEeccCCCCCcEE
Q 015171 191 LEIRSCEGLESL---DLVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLF------PIEVNVSSCGNLKCL 257 (412)
Q Consensus 191 L~l~~c~~~~~~---~i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~------~~~~~~~~~~~L~~L 257 (412)
+.+... +..+ .+.+ .+|+.+.+.+ .+..+.. .|++|+.+.+.++... -....|.+|++|+.+
T Consensus 231 l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 231 IEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp EECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred EecCCC--ccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence 999753 3333 2333 6789888854 4444432 5789999998775421 112246789999999
Q ss_pred EeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccc---eeeccC-CCeeeEEEec
Q 015171 258 KFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLI---QVEIET-PNLSIFKYHG 328 (412)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~---~~~~~~-~~L~~l~~~~ 328 (412)
.+... +.. .-...+.+|++|+.+.|.. +++.+.. .+ +|+.+++.+..-.. .....+ .++..+.+..
T Consensus 306 ~l~~~-i~~-I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 306 EIPES-IRI-LGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp CCCTT-CCE-ECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EeCCc-eEE-EhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence 99732 322 1123466789999999965 3444432 45 89999988764321 111223 2456665544
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.62 E-value=0.0012 Score=54.18 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=25.8
Q ss_pred CcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++|+.|+++++....+ ...+..+++|++|+++++.+..- ....+..+++|+.|++++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCC
Confidence 3444444444441111 12244555566666655555431 122234455555555555
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.61 E-value=0.0015 Score=53.93 Aligned_cols=57 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred CcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEeccc
Q 015171 229 SNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTK 286 (412)
Q Consensus 229 p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (412)
++|+.|+++++....+ ...+..+++|+.|+++++.+..- ....+..+++|+.|++++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence 4455555555441111 12345556666666666655441 112234556666666655
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.37 E-value=0.0029 Score=59.59 Aligned_cols=91 Identities=13% Similarity=0.153 Sum_probs=42.9
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecCcccceee----ccCC
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECCDKLIQVE----IETP 319 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c~~l~~~~----~~~~ 319 (412)
+..++.++.+......+.. ..+..+.+|+.+.+.. .++.++. .+.+|+.++|.. .++.+. ..+.
T Consensus 272 F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIVPE----KTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTTCTTCCEEEECSSEECT----TTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccccccceeccCceeecc----cccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 3445555555554333222 1234556666666643 2333322 334555555532 121111 2334
Q ss_pred CeeeEEEeccee----eecccccccceEEEE
Q 015171 320 NLSIFKYHGDLI----SFSSNALSLSETSLC 346 (412)
Q Consensus 320 ~L~~l~~~~~~~----~~l~~~~~L~~l~i~ 346 (412)
+|+.+.+...-. ..+.++.+|+++.+.
T Consensus 344 ~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 344 SLSNINFPLSLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEECCCTTCCEECTTTBTTCTTCCEEEEE
T ss_pred CCCEEEECccccEehHHHhhCCCCCCEEEEC
Confidence 555554432211 466778888888873
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.84 E-value=0.0049 Score=56.78 Aligned_cols=88 Identities=18% Similarity=0.095 Sum_probs=54.1
Q ss_pred cccCCccccCCCCeeEEEEec-eeecCC--CCCccCcccceeEeeeEEeCHHHHHHHHcCCCCccEEEeeccCCccee--
Q 015171 128 RRNLPEIIFYVESLHVLELSY-CKLQQP--SENVKLFSLRKLALREVCADDQAIASLISGCPLIEYLEIRSCEGLESL-- 202 (412)
Q Consensus 128 ~~~lp~~~~~~~~L~~L~L~~-~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~c~~~~~~-- 202 (412)
...+|. +..+++|++|+|++ +.+... ..+..+++|+.|+|+++.+.... ...+.++++|+.|+|+++....-.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCHH
Confidence 446777 77778888888875 655432 34667888888888887763211 123467788888888877542211
Q ss_pred eccCCCCccEEEEeeC
Q 015171 203 DLVNLSNLKEIILVNT 218 (412)
Q Consensus 203 ~i~~l~~L~~L~i~~c 218 (412)
.+.. ..|+.|.+.++
T Consensus 99 ~~~~-~~L~~l~l~~N 113 (347)
T 2ifg_A 99 TVQG-LSLQELVLSGN 113 (347)
T ss_dssp TTCS-CCCCEEECCSS
T ss_pred Hccc-CCceEEEeeCC
Confidence 1111 23777777654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.23 E-value=0.0047 Score=54.61 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=36.1
Q ss_pred CCceEEEEEeCCCcc-ccCCccccCCCCeeEEEEeceeecCCCCCccCc--ccceeEeeeEEeCH------HHHHHHHcC
Q 015171 114 SEVKELVLVHWRSER-RNLPEIIFYVESLHVLELSYCKLQQPSENVKLF--SLRKLALREVCADD------QAIASLISG 184 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~-~~lp~~~~~~~~L~~L~L~~~~~~~~~~~~~l~--~L~~L~L~~~~~~~------~~l~~l~~~ 184 (412)
+.++.|+++...... ..+|..+..+++|+.|+|+++.+........+. +|++|+|.++.+.. .....++..
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~ 249 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRER 249 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHH
Confidence 356666665532211 123333445566666666665554332222222 55555555555421 112234445
Q ss_pred CCCccEEE
Q 015171 185 CPLIEYLE 192 (412)
Q Consensus 185 ~p~Le~L~ 192 (412)
+|+|+.|+
T Consensus 250 ~P~L~~LD 257 (267)
T 3rw6_A 250 FPKLLRLD 257 (267)
T ss_dssp CTTCCEES
T ss_pred CcccCeEC
Confidence 55555554
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.05 E-value=0.02 Score=52.57 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=45.3
Q ss_pred ccCCCCccEEEEeeCCCCceEEE----ecCcccEEEeeeeeccce-EEeccCCCCCcEEEeeccccchHHHHHhhcCCCC
Q 015171 204 LVNLSNLKEIILVNTSDIKRVEI----KTSNVNALAIHQTYLFPI-EVNVSSCGNLKCLKFDFLPIEDEWLCNGISKLPL 278 (412)
Q Consensus 204 i~~l~~L~~L~i~~c~~l~~~~~----~~p~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (412)
+..+.+|+.|+++++..+..+.. .+++|+.|+++++....+ ...+.++++|+.|+|++|.+..- ....+..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-
Confidence 33446677777775334444431 456777777777662221 12356677777777777766541 112233333
Q ss_pred ccEEeccc
Q 015171 279 LEYLSMTK 286 (412)
Q Consensus 279 L~~L~l~~ 286 (412)
|+.|++.+
T Consensus 105 L~~l~l~~ 112 (347)
T 2ifg_A 105 LQELVLSG 112 (347)
T ss_dssp CCEEECCS
T ss_pred ceEEEeeC
Confidence 77777765
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.84 E-value=0.0076 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCcEEEeeccccch------HHHHHhhcCCCCccEEecc
Q 015171 253 NLKCLKFDFLPIED------EWLCNGISKLPLLEYLSMT 285 (412)
Q Consensus 253 ~L~~L~l~~~~~~~------~~~~~~~~~~~~L~~L~l~ 285 (412)
+|++|++++|.+.. .-...++..+|+|+.|+=.
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 78888888877753 1223456678888887644
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.44 E-value=0.096 Score=49.05 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccc----cccccceEEEecC-cccc-eeeccCCCe
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLKTLILECC-DKLI-QVEIETPNL 321 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~~L~l~~c-~~l~-~~~~~~~~L 321 (412)
+.+|.+|+.+.+......- -...+.+|++|+.+.+.. .++.++. .+.+|+.++|... ..+. ..-..+.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I--~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSI--GTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEE--CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEeccccccee--cCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 4556777777774322111 112345677787777753 3333333 4567777777431 1111 122355677
Q ss_pred eeEEEeccee----eecccccccceEEEE
Q 015171 322 SIFKYHGDLI----SFSSNALSLSETSLC 346 (412)
Q Consensus 322 ~~l~~~~~~~----~~l~~~~~L~~l~i~ 346 (412)
+.+.+...-. ..+.++++|+++.+.
T Consensus 337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 337 ERIAIPSSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEEECTTCCBCCGGGGTTCTTCCEEEES
T ss_pred CEEEECcccCEEhHhHhhCCCCCCEEEEC
Confidence 8777743221 677888899998884
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.31 E-value=0.032 Score=52.38 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=47.2
Q ss_pred ccCCCCCcEEEeeccccchHHHHHhhcCCCCccEEecccccccccccccccccceEEEecCccccee----eccCCCeee
Q 015171 248 VSSCGNLKCLKFDFLPIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRISSPCLKTLILECCDKLIQV----EIETPNLSI 323 (412)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~~~L~~ 323 (412)
+..+.+|+.+.+..+...- ....+..++.++.+..............+.+|+.+.+... +..+ -..+.+|++
T Consensus 249 f~~~~~l~~~~~~~~~~~i--~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRI--GGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEE--CSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCccee--eccccccccccceeccCceeeccccccccccccccccccc--cceechhhhcCCCCCCE
Confidence 4556677777664332211 1122345666666665442211112224566777766432 2211 124456666
Q ss_pred EEEeccee----eecccccccceEEE
Q 015171 324 FKYHGDLI----SFSSNALSLSETSL 345 (412)
Q Consensus 324 l~~~~~~~----~~l~~~~~L~~l~i 345 (412)
+.+...-. ..+.++++|+++.+
T Consensus 325 i~lp~~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 325 IDLPYLVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp ECCCTTCCEECTTTTTTCTTCCEECC
T ss_pred EEeCCcccEEhHHhccCCCCCCEEEE
Confidence 65532211 56777888888877
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.60 E-value=0.36 Score=40.23 Aligned_cols=36 Identities=11% Similarity=0.051 Sum_probs=21.8
Q ss_pred CCCCcEEEeeccccchHHHHHhh---cCCCCccEEeccc
Q 015171 251 CGNLKCLKFDFLPIEDEWLCNGI---SKLPLLEYLSMTK 286 (412)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~ 286 (412)
-+.|++|+|+++.+.+.....+. ..=..|+.|+|++
T Consensus 97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 45677777777777765544433 2224577777764
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.97 E-value=0.29 Score=45.74 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=41.6
Q ss_pred cCcccEEEeeeeeccceEEeccCCCCCcEEEeecc--ccchHHHHHhhcCCCCccEEecccccccccccc----cccccc
Q 015171 228 TSNVNALAIHQTYLFPIEVNVSSCGNLKCLKFDFL--PIEDEWLCNGISKLPLLEYLSMTKCHKLTSVRI----SSPCLK 301 (412)
Q Consensus 228 ~p~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~L~ 301 (412)
+++|+.+.+...-..--...|.+|.+|+.+.+... .+.+ ..+.+|.+|+.+.|-. .++.++. .+.+|+
T Consensus 287 c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~----~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 287 CPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILD----DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALN 360 (394)
T ss_dssp CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCC
T ss_pred ccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehH----hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCC
Confidence 45666666643221000123567788888888532 1222 2356678888888853 3444432 556778
Q ss_pred eEEEecC
Q 015171 302 TLILECC 308 (412)
Q Consensus 302 ~L~l~~c 308 (412)
.+++.+.
T Consensus 361 ~i~~~~~ 367 (394)
T 4gt6_A 361 NIEYSGS 367 (394)
T ss_dssp EEEESSC
T ss_pred EEEECCc
Confidence 7777654
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.38 E-value=0.094 Score=43.76 Aligned_cols=97 Identities=18% Similarity=0.175 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHhC--CceEEEEEeC-CCcc---ccCCccccCCCCeeEEEEeceeecCC------CCCccCcccceeE
Q 015171 100 NASLAGRCLGLAIES--EVKELVLVHW-RSER---RNLPEIIFYVESLHVLELSYCKLQQP------SENVKLFSLRKLA 167 (412)
Q Consensus 100 ~~~~~~~~l~~~~~~--~l~~L~l~~~-~~~~---~~lp~~~~~~~~L~~L~L~~~~~~~~------~~~~~l~~L~~L~ 167 (412)
...+++..+...... .+++|++... .... ..+-..+..-.+|+.|+|++|.+... .....-..|++|+
T Consensus 25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence 345666777666543 5777777542 2111 11122233446677777777766433 1122335677777
Q ss_pred eeeEEeCHHHHHHHH---cCCCCccEEEeecc
Q 015171 168 LREVCADDQAIASLI---SGCPLIEYLEIRSC 196 (412)
Q Consensus 168 L~~~~~~~~~l~~l~---~~~p~Le~L~l~~c 196 (412)
|+++.+++++...+. ..-..|++|.|+++
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 777777666654443 23445666666543
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=81.39 E-value=9.4 Score=34.88 Aligned_cols=32 Identities=6% Similarity=0.066 Sum_probs=19.1
Q ss_pred CCceEEEEEeCCCccccCCcc-ccCCCCeeEEEEec
Q 015171 114 SEVKELVLVHWRSERRNLPEI-IFYVESLHVLELSY 148 (412)
Q Consensus 114 ~~l~~L~l~~~~~~~~~lp~~-~~~~~~L~~L~L~~ 148 (412)
.+++++.+.. ....++.. +.+|.+|+.+.+..
T Consensus 46 ~~i~~v~ip~---~vt~Ig~~aF~~C~~L~~I~lp~ 78 (379)
T 4h09_A 46 DRISEVRVNS---GITSIGEANFNSCYNMTKVTVAS 78 (379)
T ss_dssp GGCSEEEECT---TEEEECTTTTTTCTTCCEEEECT
T ss_pred cCCEEEEeCC---CccChHHHHhhCCCCCCEEEeCC
Confidence 3677777653 22344443 34578888888865
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.86 E-value=2 Score=39.54 Aligned_cols=13 Identities=38% Similarity=0.588 Sum_probs=6.5
Q ss_pred cCCCCCcEEEeec
Q 015171 249 SSCGNLKCLKFDF 261 (412)
Q Consensus 249 ~~~~~L~~L~l~~ 261 (412)
.+|++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~ 295 (379)
T 4h09_A 283 SGCSNLTKVVMDN 295 (379)
T ss_dssp TTCTTCCEEEECC
T ss_pred ccccccccccccc
Confidence 4455555555543
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=57.58 E-value=3.9 Score=31.26 Aligned_cols=42 Identities=21% Similarity=0.030 Sum_probs=30.6
Q ss_pred cCCccccCCCCeeEEEEeceeecCC--CCCccCcccceeEeeeEEe
Q 015171 130 NLPEIIFYVESLHVLELSYCKLQQP--SENVKLFSLRKLALREVCA 173 (412)
Q Consensus 130 ~lp~~~~~~~~L~~L~L~~~~~~~~--~~~~~l~~L~~L~L~~~~~ 173 (412)
.+|..+ -++|++|+|+++.+... ..+..+++|+.|+|.++.+
T Consensus 24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 555433 24689999999877544 4456788899999988877
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=43.13 E-value=11 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=14.6
Q ss_pred cccEEEeeeeeccceEE-eccCCCCCcEEEeeccc
Q 015171 230 NVNALAIHQTYLFPIEV-NVSSCGNLKCLKFDFLP 263 (412)
Q Consensus 230 ~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~ 263 (412)
+|+.|+++++....+.. .+..+++|+.|+|.+|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555544211111 23344555555554443
No 171
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.19 E-value=57 Score=19.53 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=10.0
Q ss_pred ccCCCCCHHHHHHHHc
Q 015171 10 DGISTLPEPILHHILS 25 (412)
Q Consensus 10 D~is~LPdevl~~Ils 25 (412)
+-|+.||.||-.+|++
T Consensus 19 eVF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 19 EVFKQLPADIQEEILS 34 (48)
T ss_dssp GGTTTSCHHHHHHHTT
T ss_pred HHHHHCcHHHHHHHHh
Confidence 4466666666666665
Done!