BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015172
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 418 bits (1075), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/311 (66%), Positives = 245/311 (78%), Gaps = 2/311 (0%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N GV AD+SH +T + V F G +
Sbjct: 45 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQ 104
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
+L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A CP A +++ISNPV
Sbjct: 105 QLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 164
Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGIT 273
NSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+ L DVDVPVVGGHAG+T
Sbjct: 165 NSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 224
Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
ILPLLS+ P SFT EE+ LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ LR
Sbjct: 225 ILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 284
Query: 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393
L GD V EC FV S +TELPFFAS+V+LGRNG+E + S L L EYE+ LE K E
Sbjct: 285 GLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKKE 342
Query: 394 LKASIEKGVAF 404
L SIEKGV+F
Sbjct: 343 LAGSIEKGVSF 353
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/314 (66%), Positives = 246/314 (78%), Gaps = 2/314 (0%)
Query: 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N GV AD+SH +T + V F G
Sbjct: 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQ 67
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
++L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A CP A +++ISNP
Sbjct: 68 QQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP 127
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
VNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+ L DVDVPVVGGHAG+
Sbjct: 128 VNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 187
Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
TILPLLS+ P SFT EE+ LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++ L
Sbjct: 188 TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 247
Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
R L GD V EC FV S +TELPFFAS+V+LGRNG+E + S L L EYE+ LE K
Sbjct: 248 RGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS--LGPLNEYERIGLEKAKK 305
Query: 393 ELKASIEKGVAFAQ 406
EL SIEKGV+F +
Sbjct: 306 ELAGSIEKGVSFIR 319
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/312 (60%), Positives = 232/312 (74%), Gaps = 2/312 (0%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + GVAADLSH T + V + GPE+
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
L LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL A A +CPDA I IISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 215 STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
ST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FVA+ K L V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 275 LPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
+PL+S+ P V F +++ LT RIQ AGTEVV+AKAGAGSATLSMAYA ARFV S + A
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 335 LDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394
++G V EC FV+S T+ P+F++ + LG+ G+E + + ++ +E+K + PEL
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLG--IGKISPFEEKMIAEAIPEL 299
Query: 395 KASIEKGVAFAQ 406
KASI+KG F +
Sbjct: 300 KASIKKGEEFVK 311
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/320 (58%), Positives = 237/320 (74%), Gaps = 2/320 (0%)
Query: 87 ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV 146
++ Q + KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + GVAADLSH T + V
Sbjct: 22 SMSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAV 81
Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
+ GPE+L LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL A A +CP+A I
Sbjct: 82 KGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMI 141
Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVV 266
+I+NPVNST+PI AEV K+ GVY+P K+FGVTTLD+VRANTFVA+ K L V+VPV+
Sbjct: 142 CVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVI 201
Query: 267 GGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
GGHAG TI+PL+S+ P V F +++ LT RIQ AGTEVV+AKAGAGSATLSMAYA AR
Sbjct: 202 GGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR 261
Query: 327 FVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386
FV S + A++G V EC FV+S TE +F++ + LG+ G+E + + ++ +E+K
Sbjct: 262 FVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLG--IGKVSSFEEKM 319
Query: 387 LEALKPELKASIEKGVAFAQ 406
+ PELKASI+KG F +
Sbjct: 320 ISDAIPELKASIKKGEDFVK 339
>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|C Chain C, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|E Chain E, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|2PWZ|G Chain G, Crystal Structure Of The Apo Form Of E.Coli Malate
Dehydrogenase
pdb|3HHP|A Chain A, Malate Dehydrogenase Open Conformation
pdb|3HHP|B Chain B, Malate Dehydrogenase Open Conformation
pdb|3HHP|C Chain C, Malate Dehydrogenase Open Conformation
pdb|3HHP|D Chain D, Malate Dehydrogenase Open Conformation
Length = 312
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 186/316 (58%), Positives = 225/316 (71%), Gaps = 6/316 (1%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
KVAVLGAAGGIGQ LALL+K P S L LYD+ V GVA DLSH T ++ F+G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
E+ AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA CP A I II+N
Sbjct: 61 -EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PVN+TV IAAEVLK+ GVYD KLFGVTTLD++R+NTFVA+ K + +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
+TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM AAARF S
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
+RAL G+ V EC +VE + FF+ + LG+NGVE S + L+ +EQ ALE +
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKS--IGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
LK I G F K
Sbjct: 297 DTLKKDIALGEEFVNK 312
>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli
Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms
Resolution
pdb|2CMD|A Chain A, The Crystal Structure Of E.Coli Malate Dehydrogenase: A
Complex Of The Apoenzyme And Citrate At 1.87 Angstroms
Resolution
Length = 312
Score = 330 bits (846), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 185/316 (58%), Positives = 224/316 (70%), Gaps = 6/316 (1%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
KVAVLGAAGGIGQ LALL+K P S L LYD+ V GVA DLSH T ++ F+G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
E+ AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA CP A I II+N
Sbjct: 61 -EDATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PVN+TV IAAEVLK+ GVYD KLFGVTTLD++R+NTFVA+ K + +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
+TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM AAARF S
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
+RAL G+ V EC +VE + FF+ + LG+NGVE + L+ +EQ ALE +
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEE--RKSIGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
LK I G F K
Sbjct: 297 DTLKKDIALGQEFVNK 312
>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IB6|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|B Chain B, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|C Chain C, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
pdb|1IE3|D Chain D, Crystal Structure Of R153c E. Coli Malate Dehydrogenase
Length = 312
Score = 327 bits (837), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/316 (58%), Positives = 223/316 (70%), Gaps = 6/316 (1%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTG 151
KVAVLGAAGGIGQ LALL+K P S L LYD+ V GVA DLSH T ++ F+G
Sbjct: 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
E+ AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA CP A I II+N
Sbjct: 61 -EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PVN+TV IAAEVLK+ GVYD KLFGVTTLD++ +NTFVA+ K + +V+VPV+GGH+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 272 ITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331
+TILPLLS+ +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM AAARF S
Sbjct: 180 VTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391
+RAL G+ V EC +VE + FF+ + LG+NGVE + L+ +EQ ALE +
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEE--RKSIGTLSAFEQNALEGML 296
Query: 392 PELKASIEKGVAFAQK 407
LK I G F K
Sbjct: 297 DTLKKDIALGQEFVNK 312
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 175/314 (55%), Positives = 220/314 (70%), Gaps = 7/314 (2%)
Query: 95 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGP 152
KVAV+GAAGGIGQ LALL+K P S L LYD+ V GVAADLSH T + + G
Sbjct: 5 KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAG- 63
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
E+ AL+G +VV+I AGV RKPG R DLFN+NA IVK+L E +A CP+A I II+NP
Sbjct: 64 EDPTPALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
VN+TVPIAAEVLK+ GVYD +KLFGVTTLDV+R+ TFVA+ K +V VPV+GGH+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
TILPLLS+ + V F+DEE+ LT RIQNAGTEVVEAKAG GSATLS AA RF + +
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
+AL G+ +V E +VE N FFA VKLG+ GVE ++ L+++E+ AL+
Sbjct: 243 KALQGE-EVIEYAYVEGNGEHASFFAQPVKLGKEGVEEILP--YGELSDFEKAALDGXLE 299
Query: 393 ELKASIEKGVAFAQ 406
L + I+ GV F +
Sbjct: 300 TLNSDIQIGVDFVK 313
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 163/325 (50%), Gaps = 38/325 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
K++++GA G IG +ALL+ L ++++D++ +G A DL+HC +P+++
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
E L ++ +VV+I AGVPRKP MTR DL +NA IV ++ E V CP+AF+
Sbjct: 74 ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP+++ V K+K K+ G++ LD R +++ +K DV VVG
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185
Query: 268 GHAGITILPLLSK-TMPSVSFTD-EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA 325
GH G ++PL S T+ + +D E G +T + E+++ A G + + +
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKIT---HSQINEIIKKTAFGGGEIVELLKTGS 241
Query: 326 RFVESSLRA-------LDGDGDVYEC---VFVESNLTELPFFASRVKLGRNGVESLI--- 372
F + A L V C + + N+ L F V +G+NG+E ++
Sbjct: 242 AFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVVIVN 300
Query: 373 -SSDLQGLTEYEQKALEALKPELKA 396
S D + L ++++ L +LK+
Sbjct: 301 LSDDEKSLFSKSVESIQNLVQDLKS 325
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 20/294 (6%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLD--F 149
K+ V+GA G +G A + L L L DV+ +G A D+ + + P + D
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM-YESGPVGLFDTKV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
TG + A ++V+I AG+PRKPGMTR+DL NA IVK + + + + + I ++
Sbjct: 59 TGSNDYADTANS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
SNP++ +A + G+ + + LD R +F+A + + + D++ V+GGH
Sbjct: 118 SNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH 174
Query: 270 AGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324
G ++P++ T+ + +D E + L R +N G E+VE GSA + A +
Sbjct: 175 -GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSV 232
Query: 325 ARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ 377
VES + LD + V +E + F VKLGRNGVE + +L
Sbjct: 233 VEMVESIV--LDRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLD 284
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 20/294 (6%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLD--F 149
K+ V+GA G +G A I L L L DV+ +G D+ P + D
Sbjct: 1 MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETG-PVGLFDTKI 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
TG + A ++V+I AG+PRKPGMTR+DL NA IVK + + + + + I ++
Sbjct: 59 TGSNDYADTADS-DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
SNP++ +A + G+ + + LD R +F+A + + + D++ V+GGH
Sbjct: 118 SNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGH 174
Query: 270 AGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324
G ++P++ T+ + +D E + L R +N G E+VE GSA + A +
Sbjct: 175 -GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSV 232
Query: 325 ARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ 377
VES + LD + V +E + F VKLGRNGVE + +L
Sbjct: 233 VEMVESIV--LDRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEINLD 284
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 144/289 (49%), Gaps = 22/289 (7%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--F 149
K+ V+GA G +G A + L L L DV+ +G A D+ + + P + D
Sbjct: 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDM-YESGPVGLFDTKV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
TG + A ++VVI AG+PRKPGMTR+DL ++NA IV+ + + ++ + I ++
Sbjct: 59 TGSNDYADTANS-DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
SNP++ I V QK +++ G+ LD R +F+A + + + DV V+GG
Sbjct: 118 SNPLD----IMTHVAWQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGG 173
Query: 269 HAGITILPLLS-KTMPSVSFTD----EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
H G ++P++ T+ + D E + +L R + G E+V GSA S A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATS 231
Query: 324 AARFVESSLRALDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESL 371
VES + LD + V ++ + F VKLG+NGVE +
Sbjct: 232 VVEMVESIV--LDRKRVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHI 278
>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|B Chain B, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|C Chain C, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3P7M|D Chain D, Structure Of Putative Lactate Dehydrogenase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 321
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 126/256 (49%), Gaps = 23/256 (8%)
Query: 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDF 149
A K+ ++GA G IG LA L + L + L+D+ G A DL P + +DF
Sbjct: 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQ-TCPIEGVDF 60
Query: 150 T--GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
G + L+ +VV++ AGVPRKPG +RDDL IN + +T+ E + NCP+AF+
Sbjct: 61 KVRGTNDYKD-LENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVI 119
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP++ V + K GV D K + LD R TF+A + N+ + V V G
Sbjct: 120 CITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXG 176
Query: 268 GHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
GH G T +PL L + + E + + R ++ G E+V A GSA
Sbjct: 177 GH-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAY 234
Query: 318 LSMAYAAARFVESSLR 333
+ A A + ES L+
Sbjct: 235 YAPAAAGIQXAESFLK 250
>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVH|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis
pdb|3GVI|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|B Chain B, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|C Chain C, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|D Chain D, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|E Chain E, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
pdb|3GVI|F Chain F, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM
Brucella Melitensis In Complex With Adp
Length = 324
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 36/303 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLD--FT 150
K+A++G+ G IG LA L + L + L+D+ +G D++ ++P D FT
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE-SSPVDGFDAKFT 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G + A A++G +VV++ AGVPRKPGM+RDDL IN +++ + + P+AF+ I+
Sbjct: 66 GANDYA-AIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NP+++ V L++ K+ G+ LD R F++++ N+ + DV V V+GGH
Sbjct: 125 NPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGGH 180
Query: 270 AGITILPLLSKT---------MPSVSFTDEEVGDLTV-RIQNAGTEVVEAKAGAGSATLS 319
G +++PL + + + +T ++ D + R ++ G E+V GSA +
Sbjct: 181 -GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV-GLLKTGSAFYA 238
Query: 320 MAYAAARFVESSLRALDGDGDVYECVFVESNLT-----ELPFFASRVKLGRNGVESLISS 374
A +A + ES L+ D + V + L+ + + +G NGVE +I
Sbjct: 239 PAASAIQMAESYLK------DKKRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI 292
Query: 375 DLQ 377
DL
Sbjct: 293 DLD 295
>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate
Dehydrogenase In Closed Conformation
Length = 315
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 146/297 (49%), Gaps = 29/297 (9%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCNTPSQVLD-- 148
KV+V+GA G G A L+ L + L D+ + KG A D+ +P Q D
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLEA-SPVQGFDAN 66
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
G + A +VVVI AG+ RKPGM+RDDL N+ I+K++ +A + P+A I +
Sbjct: 67 IIGTSDYADTADS-DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVV 125
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
++NPV++ + V K+ G + + LD R TF+AQ+ NL + D+ V+GG
Sbjct: 126 LTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGG 182
Query: 269 HAGITILPLLSKT----MPSVSFTDEEVGDLTV-RIQNAGTEVVEAKAGAGSATLSMAYA 323
H G ++PL+ + +P + +E + V R + G E+V G GSA YA
Sbjct: 183 H-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAY----YA 236
Query: 324 -AARFVESSLRALDGDGDVYECVFV---ESNLTELPFFASRVKLGRNGVESLISSDL 376
AA VE + L V + E ++L + V LG NG+E +I +L
Sbjct: 237 PAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELEL 292
>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh)
Length = 319
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 136/296 (45%), Gaps = 34/296 (11%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCNTPSQVLDFTG 151
K+ ++G G +G A + M + L DV +G A DL H TP FT
Sbjct: 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH-GTP-----FTR 53
Query: 152 PEELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ + LKG +VV++ AGVP+KPG TR L NA ++K + V+ PD+ +
Sbjct: 54 RANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVI 113
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
+++NPV+ + LK+ G+ DP+K+FG T LD R T +AQ V V V+
Sbjct: 114 VVTNPVDV---LTYFFLKESGM-DPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVI 169
Query: 267 GGH----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
G H A I +PL + + + + + + A E++E K G+
Sbjct: 170 GEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GAT 226
Query: 317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASR-VKLGRNGVESL 371
++A A A VES D + V++E L S V LG++GVE +
Sbjct: 227 HYAIALAVADIVESIF--FDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERI 280
>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYG|B Chain B, Crystal Structure Of Mj0490 Gene Product, The Family Of
LactateMALATE DEHYDROGENASE
pdb|1HYE|A Chain A, Crystal Structure Of The Mj0490 Gene Product, The Family
Of LactateMALATE DEHYDROGENASE, DIMERIC STRUCTURE
Length = 313
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 61/317 (19%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHL----YDVMNVKGVAADLSHC--NTPSQVL 147
KV ++GA+G +G ALL+ P + L L + + ++G+ D+ T S
Sbjct: 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ +E + +VV+I +GVPRK GM+R DL NA IV + +A+ C D I
Sbjct: 61 IYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF 119
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPK----KLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
+I+NPV+ V+ K + D K ++FG+ T LD +R +A+ + + +V
Sbjct: 120 VITNPVD--------VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVR 171
Query: 263 VPVVGGHAGITILPLLSKT----MPSVSF-------TDEEVGDLTVRIQNAGTEVVEAKA 311
++G H G +++PLLS T +P F DE + D ++ G +++ K
Sbjct: 172 TRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIED----VKTKGEQIIRLKG 226
Query: 312 GAGSATLSMAYAAARFVESSLRAL-----------DGDGDVYECVFVESNLTELPFFASR 360
G+ + R + ++ + L DG DV C+ V
Sbjct: 227 GSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDV--CIGVP------------ 272
Query: 361 VKLGRNGVESLISSDLQ 377
VK+GR+G+E ++S +L
Sbjct: 273 VKIGRDGIEEVVSIELD 289
>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From
Salinibacter Ruber
Length = 314
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 139/297 (46%), Gaps = 27/297 (9%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--F 149
KV V+GA G +G +A + + + + D+ + +G A D+ ++P D
Sbjct: 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE-SSPIHGFDTRV 58
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
TG + + +V +I AG+PR PGM+RDDL N IV + E + PD+ I ++
Sbjct: 59 TGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+NP++ +A E + ++ G+ LD R +F+A++ ++ + DV ++GG
Sbjct: 118 ANPLDVMTYVAYEASG----FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173
Query: 269 HAGITILPLLSKT----MPSVSFTDE-EVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
H G T++PL T +P D+ + ++ R + AG E+V+ T +
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-----GTSAWYAP 227
Query: 324 AARFVESSLRALDGDGDVYECVFV---ESNLTELPFFASRVKLGRNGVESLISSDLQ 377
A E + L + + C E L +L F VKLG GVE +I DL
Sbjct: 228 GAAAAEMTEAILKDNKRILPCAAYCDGEYGLDDL-FIGVPVKLGAGGVEEVIEVDLD 283
>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei
pdb|1OC4|B Chain B, Lactate Dehydrogenase From Plasmodium Berghei
Length = 322
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 134/309 (43%), Gaps = 33/309 (10%)
Query: 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQV 146
+ P+A VL +G IG +A LI L + V N+ G A D SH N +
Sbjct: 1 MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVVMFDIVKNMPHGKALDTSHTNVMAYS 57
Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNC 201
LK +VV++ AG + PG RDDL +N I+ + + +NC
Sbjct: 58 NCKVSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNC 117
Query: 202 PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLID 260
P+AFI +++NPV+ V ++L Q K+ G+ LD R +++QK N+ D
Sbjct: 118 PNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRD 173
Query: 261 VDVPVVGGHAGITIL----------PLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAK 310
V+ +VG H +L P L + + + TD+E+ + R N E+V
Sbjct: 174 VNAHIVGAHGNKMVLLKRYITVGGIP-LQEFINNKKITDQELDAIFDRTINTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELPFFASR-VKLGRNGV 368
A S ++ A A ES +R L V C +E FA + +G NGV
Sbjct: 233 A---SPYVAPAAAIIEMAESYIRDLR---KVLICSTLLEGQYGHKDIFAGTPLVIGGNGV 286
Query: 369 ESLISSDLQ 377
E +I L
Sbjct: 287 EQVIELQLN 295
>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXH|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXK|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXK|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
K++++GA G +G A + L + L V V +G A DL +P + D TG
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
A +V+V+ +G PRKPGM+R+DL +NA+I + + A P+A I +++N
Sbjct: 62 TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
P+++ +AAEV G + + LD R TF+A + + + DV ++GGH
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
+ LP S +P F + + + R + G E+V GSA + A A A+
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
VE+ L+ V + + L ++ +F V LG GVE ++ L E E L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
A ++A+++
Sbjct: 293 NASAKAVRATLD 304
>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
pdb|1UR5|C Chain C, Stabilization Of A Tetrameric Malate Dehydrogenase By
Introduction Of A Disulfide Bridge At The DimerDIMER
Interface
Length = 309
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 149/313 (47%), Gaps = 20/313 (6%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
K++++GA G +G A + L + L V V +G A DL +P + D TG
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
A +V+V+ +G PRKPGM+R+DL +NA+I + + A P+A I +++N
Sbjct: 62 TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
P+++ +AAEV G + + LD R TF+A + + + DV ++GGH G
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGH-G 176
Query: 272 ITILPL-----LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
++PL +S S + + + R + G E+V GSA + A A A+
Sbjct: 177 DEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQ 235
Query: 327 FVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386
VE+ L+ V + + L ++ +F V LG GVE ++ L E E
Sbjct: 236 MVEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMAL 291
Query: 387 LEALKPELKASIE 399
L A ++A+++
Sbjct: 292 LNASAKAVRATLD 304
>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXI|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
pdb|1UXJ|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
pdb|1UXJ|C Chain C, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-dimer Interface
Length = 309
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
K++++GA G +G A + L + L V V +G A DL +P + D TG
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
A +V+V+ +G PRKPGM+R+DL +NA+I + + A P+A I +++N
Sbjct: 62 TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
P+++ +AAEV G + + LD R TF+A + + + DV ++GGH
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
+ LP S +P F + + + R + G E+V GSA + A A A+
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
VE+ L+ V + + L ++ +F V LG GVE ++ L E E L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
A ++A+++
Sbjct: 293 NASAKAVRATLD 304
>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUY|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1UXG|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface.
pdb|1UXG|B Chain B, Large Improvement In The Thermal Stability Of A Tetrameric
Malate Dehydrogenase By Single Point Mutations At The
Dimer-Dimer Interface
Length = 309
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 18/312 (5%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDF--TG 151
K++++GA G +G A + L + L V V +G A DL +P + D TG
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEA-SPIEGFDVRVTG 61
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
A +V+V+ +G PRKPGM+R+DL +NA+I + + A P+A I +++N
Sbjct: 62 TNNYADTANS-DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN 120
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
P+++ +AAEV G + + LD R TF+A + + + DV ++GGH
Sbjct: 121 PLDAMTYLAAEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGD 177
Query: 272 ITI-LPLLSKT--MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
+ LP S +P F + + + R + G E+V GSA + A A A+
Sbjct: 178 EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQM 236
Query: 328 VESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387
VE+ L+ V + + L ++ +F V LG GVE ++ L E E L
Sbjct: 237 VEAVLKDKKRVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILELPLN---EEEMALL 292
Query: 388 EALKPELKASIE 399
A ++A+++
Sbjct: 293 NASAKAVRATLD 304
>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
pdb|3FI9|B Chain B, Crystal Structure Of Malate Dehydrogenase From
Porphyromonas Gingivalis
Length = 343
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 106/233 (45%), Gaps = 25/233 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYD--VMNVKGVAADLSHCNTPSQVLDFTGP 152
K+ ++GAAG IG +A M L L LYD + ++GVA ++ HC L FT
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFT-- 67
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDA-FIHIISN 211
++ AL +V G PRK GMTR+DL NA I L + + CPD + II N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 212 PVNST--VPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL-IDVDVPVVGG 268
P + T V + LK P ++ + LD R + +A+ +K + + GG
Sbjct: 128 PADITGLVTLIYSGLK------PSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGG 181
Query: 269 H----------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKA 311
H A + P L+ + + T+E+ +L R+ G +++ +
Sbjct: 182 HGEQMAVFASTAKVNGTP-LTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG 233
>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T25|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 3- Hydroxyisoxazole-4-Carboxylic Acid
pdb|1T26|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh And 4- Hydroxy-1,2,5-Thiadiazole-3-Carboxylic Acid
pdb|1T2C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nadh
pdb|1T2D|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
Nad+ And Oxalate
pdb|2X8L|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Apo Structure
pdb|4B7U|A Chain A, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|B Chain B, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|C Chain C, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
pdb|4B7U|D Chain D, Plasmodium Falciparum L-Lactate Dehydrogenase Complexed
With Bicine
Length = 322
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 143/326 (43%), Gaps = 43/326 (13%)
Query: 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
+ P+A VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 1 MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
L G +VV++ AG + PG RDDL +N I+ + + N
Sbjct: 57 SNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
CP+AFI +++NPV+ V ++L Q K+ G+ LD R +++QK N+
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
DV+ +VG H +L T+ + +D E+ + R N E+V
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLG 364
A S ++ A A ES L+ L + V + S L E F + V LG
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLG 282
Query: 365 RNGVESLISSDLQGLTEYEQKALEAL 390
NGVE +I +LQ +E + K EA+
Sbjct: 283 ANGVEQVI--ELQLNSEEKAKFDEAI 306
>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedicarboxylic Acid
pdb|1U4S|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2,6- Naphthalenedisulphonic Acid
pdb|1U5A|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,5- Dihydroxy-2-Naphthoic Acid
pdb|1U5C|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
3,7- Dihydroxynaphthalene-2-Carboxylic Acid And Nad+
pdb|2A94|A Chain A, Structure Of Plasmodium Falciparum Lactate Dehydrogenase
Complexed To Apadh
Length = 321
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 139/316 (43%), Gaps = 40/316 (12%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEEL 155
VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 7 VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT 65
Query: 156 ASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
L G +VV++ AG + PG RDDL +N I+ + + NCP+AFI +++
Sbjct: 66 YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ V ++L Q K+ G+ LD R +++QK N+ DV+ +VG H
Sbjct: 126 NPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH 181
Query: 270 AGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
+L T+ + +D E+ + R N E+V A S ++
Sbjct: 182 GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA---SPYVAP 238
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLGRNGVESLISS 374
A A ES L+ L + V + S L E F + V LG NGVE +I
Sbjct: 239 AAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVI-- 289
Query: 375 DLQGLTEYEQKALEAL 390
+LQ +E + K EA+
Sbjct: 290 ELQLNSEEKAKFDEAI 305
>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With
2-({4-
Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane-
1,1,2-Triol
Length = 323
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 139/316 (43%), Gaps = 40/316 (12%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEEL 155
VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 7 VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT 65
Query: 156 ASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
L G +VV++ AG + PG RDDL +N I+ + + NCP+AFI +++
Sbjct: 66 YDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ V ++L Q K+ G+ LD R +++QK N+ DV+ +VG H
Sbjct: 126 NPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHIVGAH 181
Query: 270 AGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
+L T+ + +D E+ + R N E+V A S ++
Sbjct: 182 GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA---SPYVAP 238
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLGRNGVESLISS 374
A A ES L+ L + V + S L E F + V LG NGVE +I
Sbjct: 239 AAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVI-- 289
Query: 375 DLQGLTEYEQKALEAL 390
+LQ +E + K EA+
Sbjct: 290 ELQLNSEEKAKFDEAI 305
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 143/326 (43%), Gaps = 43/326 (13%)
Query: 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
+ P+A VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 1 MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
L G +VV++ AG + PG RDDL +N I+ + + N
Sbjct: 57 SNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
CP+AFI +++NPV+ V ++L Q K+ G+ LD R +++QK N+
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
DV+ +VG H +L T+ + +D E+ + R N E+V
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP------FFASRVKLG 364
A S ++ A A ES L+ L + V + S L E F + V LG
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDL-------KKVLICSTLLEGQYGHSDIFGGTPVVLG 282
Query: 365 RNGVESLISSDLQGLTEYEQKALEAL 390
NGVE +I +LQ +E + K EA+
Sbjct: 283 ANGVEQVI--ELQLNSEEKAKFDEAI 306
>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2A92|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Plasmodium
Vivax: Complex With Nadh
pdb|2AA3|A Chain A, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|B Chain B, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|C Chain C, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
pdb|2AA3|D Chain D, Crystal Structure Of Plasmodium Vivax Lactate
Dehydrogenase Complex With Apadh
Length = 321
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 147/321 (45%), Gaps = 50/321 (15%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA 156
VL +G IG +A LI L + V N+ +G A D SH N V+ ++ +
Sbjct: 7 VLVGSGMIGGVMATLIVQKNLGDVVMFDVVKNMPQGKALDTSHSN----VMAYSNCKVTG 62
Query: 157 SA----LKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
S LKG +VV++ AG + PG RDDL +N I+ + + + CP+AFI
Sbjct: 63 SNSYDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFII 122
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPK-KLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
+++NPV+ V + E GV PK K+ G+ LD R +++QK N+ DV+ +
Sbjct: 123 VVTNPVDVMVQLLFE---HSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALI 177
Query: 266 VGGHAGITIL----------PLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
VG H +L P L + + + TDEEV + R N E+V A S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIP-LQEFINNKKITDEEVEGIFDRTVNTALEIVNLLA---S 233
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRV------KLGRNGVE 369
++ A A ES L+ + + V V S L E + S + +G GVE
Sbjct: 234 PYVAPAAAIIEMAESYLKDI-------KKVLVCSTLLEGQYGHSNIFGGTPLVIGGTGVE 286
Query: 370 SLISSDLQGLTEYEQKALEAL 390
+I +LQ E + K EA+
Sbjct: 287 QVI--ELQLNAEEKTKFDEAV 305
>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase.
pdb|1LDG|A Chain A, Plasmodium Falciparum L-lactate Dehydrogenase Complexed
With Nadh And Oxamate
Length = 316
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 139/322 (43%), Gaps = 35/322 (10%)
Query: 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
+ P+A VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 1 MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
L G +VV++ AG + PG R DL +N I+ + + N
Sbjct: 57 SNCKVSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
CP+AFI +++NPV+ V ++L Q K+ G+ LD R +++QK N+
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
DV+ +VG H +L T+ + +D E+ + R N E+V
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELPFFASR-VKLGRNGV 368
A S ++ A A ES L+ L V C +E F V LG NGV
Sbjct: 233 A---SPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGV 286
Query: 369 ESLISSDLQGLTEYEQKALEAL 390
E +I +LQ +E + K EA+
Sbjct: 287 EQVI--ELQLNSEEKAKFDEAI 306
>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide).
pdb|2EWD|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor Analog (3-Acetylpyridine Adenine
Dinucleotide)
Length = 317
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 147/311 (47%), Gaps = 35/311 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
K+AV+G+ G IG +A ++ L + L+D+ +G A D++H + S+V+
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVI- 62
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
G ++ A + G +VV+I A +P +P R +L NA I+ ++ E V CP+AF+
Sbjct: 63 --GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
I+NP++ V + K G+ K LD R TF+AQ + DV V+GG
Sbjct: 120 ITNPLDVMV---SHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176
Query: 269 HAGITILPLLSKT----MPSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
H G ++P S +P SF T E++ ++ + A EV + G+A
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD-NLKTGTAYF 234
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISSDL 376
+ A AA + E+ L+ V C SN + + +G+NGVE ++ D
Sbjct: 235 APAAAAVKMAEAYLKDKKA---VVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILELD- 290
Query: 377 QGLTEYEQKAL 387
LT EQK L
Sbjct: 291 --LTPLEQKLL 299
>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p
Mutant Complexed With Nadh And Oxamate
Length = 322
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 87/320 (27%), Positives = 139/320 (43%), Gaps = 31/320 (9%)
Query: 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ 145
+ P+A VL +G IG +A LI L + L+D++ G A D SH N +
Sbjct: 1 MAPKAKI---VLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAY 56
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADN 200
L G +VV++ AG + PG RDDL +N I+ + + N
Sbjct: 57 SNCKVSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 201 CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLI 259
CP+AFI +++NPV+ V ++L Q K+ G+ LD R +++QK N+
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSF---------TDEEVGDLTVRIQNAGTEVVEAK 310
DV+ +VG H +L T+ + +D E+ + R N E+V
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH 232
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVES 370
A A + A L+ + + E + S++ F + V LG NGVE
Sbjct: 233 AAPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 371 LISSDLQGLTEYEQKALEAL 390
+I +LQ +E + K EA+
Sbjct: 289 VI--ELQLNSEEKAKFDEAI 306
>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FM3|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Pyruvic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FN7|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Substrate (Lactic
Acid) And Cofactor (B- Nicotinamide Adenine
Dinucleotide)
pdb|2FNZ|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FNZ|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum Complexed With Cofactor
(B-Nicotinamide Adenine Dinucleotide) And Inhibitor
(Oxamic Acid)
pdb|2FRM|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|B Chain B, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|C Chain C, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
pdb|2FRM|D Chain D, Crystal Structure Of The Lactate Dehydrogenase From
Cryptosporidium Parvum
Length = 321
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 35/311 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHC----NTPSQVLD 148
K+AV+G+ G IG +A ++ L + L+D+ +G A D++H + S+V+
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVI- 62
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
G + A + G +VV+I A +P +P R +L NA I+ ++ E V CP+AF+
Sbjct: 63 --GTNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
I+NP++ V + K G+ K LD R TF+AQ + DV V+GG
Sbjct: 120 ITNPLDVMV---SHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176
Query: 269 HAGITILPLLSKT----MPSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
H G ++P S +P SF T E++ ++ + A EV + G+A
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD-NLKTGTAYF 234
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISSDL 376
+ A AA + E+ L+ V C SN + + +G+NGVE ++ D
Sbjct: 235 APAAAAVKMAEAYLKDKKA---VVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILELD- 290
Query: 377 QGLTEYEQKAL 387
LT EQK L
Sbjct: 291 --LTPLEQKLL 299
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 118/257 (45%), Gaps = 32/257 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGP 152
KVA++GA G +G A + + + L L DV K G A D++H L F G
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
L S +K +V+V+ AG RKPG TR DL N I K + + + I +
Sbjct: 62 MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+SNPV+ I + K G+ K + T LD +R +++K + + +V ++G
Sbjct: 122 VSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIGE 178
Query: 269 HAGITILPLLSKTM------------PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
H G + LPL S T P +FT+E+ + ++ AG +++ K G+
Sbjct: 179 H-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GAT 234
Query: 317 TLSMAYAAARFVESSLR 333
+A + VE+ L+
Sbjct: 235 YYGIAVSINTIVETLLK 251
>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4H7P|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin
pdb|4I1I|A Chain A, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
pdb|4I1I|B Chain B, Crystal Structure Of A Putative Cytosolic Malate
Dehydrogenase From Leishmania Major Friedlin In Complex
With Nad
Length = 345
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 25/238 (10%)
Query: 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDV----MNVKGVAADLSHCNT 142
++ KVAV GAAG IG L LI L+ L L D+ + GV A+L C
Sbjct: 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAF 82
Query: 143 P--SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD- 199
P +V+ P A GV + ++ PRK GM R DL +NA I K EA+A
Sbjct: 83 PLLDKVVVTADPR---VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAV 139
Query: 200 NCPDAFIHIISNPVNSTVPIAAEVLKQ-KGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL 258
D + ++ NP N+ I +LK +G +P+ + +T LD RA + +A+K + +
Sbjct: 140 AASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSLLARKAGVPV 196
Query: 259 IDVDVPVVGGHAGITILP-----LLSKTMPSVSFTDEEVGDLTVR-IQNAGTEVVEAK 310
V ++ G+ T +P ++ T + D+ + D V+ ++ G E+++ +
Sbjct: 197 SQVRNVIIWGNHSSTQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR 254
>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|B Chain B, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|C Chain C, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQY|D Chain D, T-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|A Chain A, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|B Chain B, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|C Chain C, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|D Chain D, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|E Chain E, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|2ZQZ|F Chain F, R-State Structure Of Allosteric L-Lactate Dehydrogenase
From Lactobacillus Casei
pdb|3VKV|A Chain A, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|B Chain B, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|C Chain C, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|D Chain D, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|E Chain E, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
pdb|3VKV|F Chain F, Complex Structure Of Lactobacillus Casei Lactate
Dehydrogenase With Fructose-1,6-Bisphosphate
Length = 326
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/319 (24%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
+L G +G A + + + + + D+ KG A DLS+ L FT P+++
Sbjct: 13 ILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSPKKI 66
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
SA K ++VVI AG P+KPG TR DL N N I+K++V+ + D+ + + +N
Sbjct: 67 YSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PV+ + K G + + T+LD R +A+ N+ V ++G H G
Sbjct: 127 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-G 182
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
T P+ S K P + ++++ + +++A E+++ K G+
Sbjct: 183 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GATFY 237
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
+A A AR ++ L D + + V+++ L ++ + + + RNG+++++
Sbjct: 238 GIATALARISKAILN--DENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-- 292
Query: 377 QGLTEYEQKALEALKPELK 395
LT++E+++++ +LK
Sbjct: 293 -PLTDHEEESMQKSASQLK 310
>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
pdb|3CZM|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxq
Length = 326
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 38/316 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
K+A++G+ G IG + L + L + L+DV+ +G A D S + +
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 153 EELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ G +VV+I AG+ + PG +R+DL NA I++ + + V CP AF+
Sbjct: 68 ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFG--VTTLDVVRANTFVAQKKNLKLIDVDVPV 265
+++NP++ V E G+ PK + LD R F+A + + D+ V
Sbjct: 128 VVTNPLDCMVKCFHEA---SGL--PKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 266 VGGHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
+G H G +LPL L + + T+ ++ ++ R + AG E+V G GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYEC-VFV--ESNLTELPFFASRVKLGRNGVESLI 372
A + A +A ++ L+ + V C V+ E L ++ F +G G+E +I
Sbjct: 241 AYYAPALSAITMAQAFLK---DEKRVLPCSVYCQGEYGLHDM-FIGLPAVIGGGGIEQVI 296
Query: 373 SSDLQGLTEYEQKALE 388
+ LT EQ+
Sbjct: 297 ELE---LTHEEQECFR 309
>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOV|B Chain B, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form
pdb|1SOW|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
pdb|1SOW|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With
Nad And Oxalate
Length = 328
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/316 (25%), Positives = 142/316 (44%), Gaps = 38/316 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
K+A++G+ G IG + L + L + L+DV+ +G A D S + +
Sbjct: 10 KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 153 EELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ G +VV+I AG+ + PG +R+DL NA I++ + + V CP AF+
Sbjct: 68 ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFG--VTTLDVVRANTFVAQKKNLKLIDVDVPV 265
+++NP++ V E G+ PK + LD R F+A + + D+ V
Sbjct: 128 VVTNPLDCMVKCFHEA---SGL--PKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 266 VGGHAGITILPL----------LSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
+G H G +LPL L + + T+ ++ ++ R + AG E+V G GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 316 ATLSMAYAAARFVESSLRALDGDGDVYEC-VFV--ESNLTELPFFASRVKLGRNGVESLI 372
A + A +A ++ L+ + V C V+ E L ++ F +G G+E +I
Sbjct: 241 AYYAPALSAITMAQAFLK---DEKRVLPCSVYCQGEYGLHDM-FIGLPAVIGGGGIEQVI 296
Query: 373 SSDLQGLTEYEQKALE 388
+ LT EQ+
Sbjct: 297 ELE---LTHEEQECFR 309
>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate
Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms
Resolution
Length = 325
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 42/319 (13%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
+L G +G A + + + + + D+ KG A DLS+ L FT P+++
Sbjct: 12 ILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSPKKI 65
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
SA K ++VVI AG P++PG TR DL N N I+K++V+ + D+ + + +N
Sbjct: 66 YSAEYSDAKDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAAN 125
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PV+ + K G + + T+LD R +A+ N+ V ++G H G
Sbjct: 126 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-G 181
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
T P+ S K P + ++++ + +++A E+++ K G+
Sbjct: 182 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRDAAYEIIKLK---GATFY 236
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
+A A AR ++ L D + + V+++ + +L + + + RNG+++++
Sbjct: 237 GIATALARISKAILN--DENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-- 291
Query: 377 QGLTEYEQKALEALKPELK 395
LT++E+++++ +LK
Sbjct: 292 -PLTDHEEESMQKSASQLK 309
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 25/229 (10%)
Query: 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQV-LDFTGPE 153
+ +LGA G +G A+++ M L + +G A DL+H V + +G
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213
++G ++V++ AG+ RKPGMTR+ L NAN + L E + DA + I +NPV
Sbjct: 61 SYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119
Query: 214 NSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
++ V+ +K + +++ G + LD R +++QK + V+ V+G H G
Sbjct: 120 DAM----TYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-GQ 174
Query: 273 TILPLLSKTMPSVS----------FTDEEVGDLTVRIQNAGTEVVEAKA 311
+ P+ P +S + EE+ ++ NAG ++ E +
Sbjct: 175 KMFPV-----PRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRG 218
>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|B Chain B, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|C Chain C, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|D Chain D, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|E Chain E, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
pdb|3VKU|F Chain F, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase
Length = 326
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 148/319 (46%), Gaps = 42/319 (13%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEEL 155
+L G +G A + + + + + D+ KG A DL L FT P+++
Sbjct: 13 ILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDA------LPFTSPKKI 66
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
SA K ++VVI AG P+KPG TR DL N N I+K++V+ + D+ + + +N
Sbjct: 67 YSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAG 271
PV+ + K G + + T+LD R +A+ N+ V ++G H G
Sbjct: 127 PVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-G 182
Query: 272 ITILPLLS-------------KTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
T P+ S K P + ++++ + ++N E+++ K G+
Sbjct: 183 DTEFPVWSHANIGGVTIAEWVKAHPEIK--EDKLVKMFEDVRNKAYEIIKLK---GATFY 237
Query: 319 SMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPFFASRVKLGRNGVESLISSDL 376
+A A AR ++ L D + + V+++ L ++ + + + RNG+++++
Sbjct: 238 GIATALARISKAILN--DENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-- 292
Query: 377 QGLTEYEQKALEALKPELK 395
LT++E+++++ +LK
Sbjct: 293 -PLTDHEEESMQKSASQLK 310
>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1HLP|B Chain B, Structural Features Stabilizing Halophilic Malate
Dehydrogenase From An Archaebacterium
pdb|1D3A|A Chain A, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
pdb|1D3A|B Chain B, Crystal Structure Of The Wild Type Halophilic Malate
Dehydrogenase In The Apo Form
Length = 303
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
L + G +++ G LD R ++++ + + +V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
K T P S ++E +GDL Q + +V+E K G+ A A VE+ L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 237
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
G+V V +E E F V+LG NGVE ++ DL +YEQ +
Sbjct: 238 HDT---GEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 291
Query: 391 KPELKASIEK 400
+L +K
Sbjct: 292 AEKLSDQYDK 301
>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|B Chain B, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|C Chain C, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5K|D Chain D, 2.0 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui (radiation
Damage Series)
pdb|2J5Q|A Chain A, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|B Chain B, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|C Chain C, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5Q|D Chain D, 2.15 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After First
Radiation Burn (Radiation Damage Series)
pdb|2J5R|A Chain A, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|B Chain B, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|C Chain C, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
pdb|2J5R|D Chain D, 2.25 A Resolution Structure Of The Wild Type Malate
Dehydrogenase From Haloarcula Marismortui After Second
Radiation Burn (Radiation Damage Series)
Length = 304
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D SNPV+ +
Sbjct: 71 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
L + G +++ G LD R ++++ + + +V+ ++G H G +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
K T P S ++E +GDL Q + +V+E K G+ A A VE+ L
Sbjct: 186 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 238
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
G+V V +E E F V+LG NGVE ++ DL +YEQ +
Sbjct: 239 HDT---GEVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 292
Query: 391 KPELKASIEK 400
+L +K
Sbjct: 293 AEKLSDQYDK 302
>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form
pdb|1PZF|A Chain A, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|B Chain B, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|C Chain C, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZF|D Chain D, T.gondii Ldh1 Ternary Complex With Apad+ And Oxalate
pdb|1PZH|A Chain A, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|B Chain B, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|C Chain C, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
pdb|1PZH|D Chain D, T.Gondii Ldh1 Ternary Complex With Nad And Oxalate
Length = 331
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
Q KVA++G+ G IG + L + L + LYDV+ +G A DLSH + +
Sbjct: 7 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 64
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
+AL G + V++ AG+ + PG +R+DL N+ I++ + + + CP
Sbjct: 65 SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
FI +++NP++ V + E GV LD R +VA ++ DV
Sbjct: 125 KTFIIVVTNPLDCMVKVMCEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 263 VPVVGGHAGITILPLL 278
V+G H G ++PL+
Sbjct: 182 ATVIGTH-GDCMVPLV 196
>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
pdb|2X0R|B Chain B, R207s,R292s Mutant Of Malate Dehydrogenase From The
Halophilic Archaeon Haloarcula Marismortui (Holo Form)
Length = 304
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D SNPV+ +
Sbjct: 71 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 126
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
L + G +++ G LD R ++++ + + +V+ ++G H G +P+ S
Sbjct: 127 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 185
Query: 280 KTMPSVSFTDEEV-GD----LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
K SV TD E GD L +Q + +V+E K G+ A A VE+ L
Sbjct: 186 KV--SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHD 240
Query: 335 LDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
G+V V +E E F V LG NGVE ++ DL +YEQ +
Sbjct: 241 T---GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLD---DYEQDLMADAAE 294
Query: 393 ELKASIEK 400
+L +K
Sbjct: 295 KLSDQYDK 302
>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|B Chain B, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|C Chain C, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
pdb|3OM9|D Chain D, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With
Nad And Oxq
Length = 329
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
Q KVA++G+ G IG + L + L + LYDV+ +G A DLSH + +
Sbjct: 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 62
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
+AL G + V++ AG+ + PG +R+DL N+ I++ + + + CP
Sbjct: 63 SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 122
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
FI +++NP++ V + E GV LD R +VA ++ DV
Sbjct: 123 KTFIIVVTNPLDCMVKVMCEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 263 VPVVGGHAGITILPLL 278
V+G H G ++PL+
Sbjct: 180 ATVIGTH-GDCMVPLV 194
>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|B Chain B, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|C Chain C, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
pdb|1O6Z|D Chain D, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of
Malate Dehydrogenase From The Halophilic Archaeon
Haloarcula Marismortui (holo Form)
Length = 303
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/248 (29%), Positives = 116/248 (46%), Gaps = 24/248 (9%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
L + G +++ G LD R ++++ + + +V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 KTMPSVSFTDEEV-GD----LTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
K SV TD E GD L +Q + +V+E K G+ A A VE+ L
Sbjct: 185 KV--SVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPARGVAHMVEAILHD 239
Query: 335 LDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
G+V V +E E F V LG NGVE ++ DL +YEQ +
Sbjct: 240 T---GEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEWDLD---DYEQDLMADAAE 293
Query: 393 ELKASIEK 400
+L +K
Sbjct: 294 KLSDQYDK 301
>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
pdb|2HLP|B Chain B, Crystal Structure Of The E267r Mutant Of A Halophilic
Malate Dehydrogenase In The Apo Form
Length = 303
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 117/250 (46%), Gaps = 28/250 (11%)
Query: 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220
G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D SNPV+ +
Sbjct: 70 GSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LL 125
Query: 221 AEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLS 279
L + G +++ G LD R ++++ + + +V+ ++G H G +P+ S
Sbjct: 126 NRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFS 184
Query: 280 K-----TMPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
K T P S ++E +GDL Q + +V+E K G+ A A VE+ L
Sbjct: 185 KVRVDGTDPEFSGDEKEQLLGDL----QESAMDVIERK---GATEWGPARGVAHMVEAIL 237
Query: 333 RALDGDGDVY-ECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
G V V +E E F V+LG NGVE ++ DL +YEQ +
Sbjct: 238 HDT---GRVLPASVKLEGEFGHEDTAFGVPVRLGSNGVEEIVEWDLD---DYEQDLMADA 291
Query: 391 KPELKASIEK 400
+L +K
Sbjct: 292 AEKLSDQYDK 301
>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|B Chain B, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|C Chain C, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
pdb|1PZG|D Chain D, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6
Angstroms
Length = 331
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-L 147
Q KVA++G+ G IG + L + L + LYDV+ +G A DLSH + +
Sbjct: 7 QRRKKVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNV 64
Query: 148 DFTGPEELASALKGVNVVVIPAGVPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202
+AL G + V++ AG+ + PG +R+DL N+ I++ + + + CP
Sbjct: 65 SVRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
FI +++NP++ V + E GV LD R +VA ++ DV
Sbjct: 125 KTFIIVVTNPLDCMVKVMXEA---SGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 263 VPVVGGHAGITILPLL 278
V+G H G ++PL+
Sbjct: 182 ATVIGTH-GDCMVPLV 196
>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|B Chain B, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|C Chain C, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
pdb|1EZ4|D Chain D, Crystal Structure Of Non-Allosteric L-Lactate
Dehydrogenase From Lactobacillus Pentosus At 2.3
Angstrom Resolution
Length = 318
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 28/248 (11%)
Query: 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGPEEL 155
VL G +G A + + + DV+ KG A DL FT P+++
Sbjct: 9 VLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA------FTAPKKI 62
Query: 156 ASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
S K ++VVI AG P+KPG +R DL N N NI+ ++V+ V D+ D + +N
Sbjct: 63 YSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH-- 269
PV+ + K G + + T+LD R + ++ N+ VD ++G H
Sbjct: 123 PVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD 179
Query: 270 ---AGITILPLLSKTMPSVS----FTDEEVGDLTVRIQNAGTEVVEAKA----GAGSATL 318
A + + ++ + V+ +D+++ L ++N +++ K G G+A +
Sbjct: 180 SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALM 239
Query: 319 SMAYAAAR 326
++ A R
Sbjct: 240 RISKAILR 247
>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D0O|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus
pdb|3D4P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
pdb|3D4P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Staphylococcus Aureus Complexed With Nad And Pyruvate
Length = 317
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCN--TPSQVLDFT 150
KV ++G G +G A + +V L + D+ V+G DL H +P+ V
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G S ++VVI AG +KPG TR DL + N I K++V V + D + +
Sbjct: 67 GE---YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPV+ +A K G+ + + T LD R +++ ++ VD ++G H
Sbjct: 124 NPVDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH- 179
Query: 271 GITILPLLSKT----MPSVSFTDE------EVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
G T LP+ S P + ++ ++ + V+ ++A ++++AK G+ +
Sbjct: 180 GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGV 236
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLG------RNGVESLI 372
A AR E+ R D V S L E + V +G RNG+ +++
Sbjct: 237 AMGLARITEAIFRNED-------AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVV 287
>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
pdb|3H3J|B Chain B, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r)
Fro Staphylococcus Aureus Complexed With Nad And
Pyruvate
Length = 317
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 130/298 (43%), Gaps = 38/298 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV--MNVKGVAADLSHCN--TPSQVLDFT 150
KV ++G G +G A + +V L + D+ V+G DL H +P+ V
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G S ++VVI AG +KPG TR DL + N I K++V V + D + +
Sbjct: 67 GE---YSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPV+ +A K G+ + + T LD R +++ ++ VD ++G H
Sbjct: 124 NPVDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH- 179
Query: 271 GITILPLLSKT----MPSVSFTDE------EVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
G T LP+ S P + ++ ++ + V+ ++A ++++AK G+ +
Sbjct: 180 GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYGV 236
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLG------RNGVESLI 372
A AR E+ R D V S L E + V +G RNG+ +++
Sbjct: 237 AMGLARITEAIFRNED-------AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVV 287
>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LLD|B Chain B, Molecular Basis Of Allosteric Activation Of Bacterial
L-Lactate Dehydrogenase
pdb|1LTH|T Chain T, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
pdb|1LTH|R Chain R, T And R States In The Crystals Of Bacterial L-Lactate
Dehydrogenase Reveal The Mechanism For Allosteric
Control
Length = 319
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 120/257 (46%), Gaps = 30/257 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSHCNT--PSQVLDFT 150
K+AV+GA G +G LA + + L D+ V+ D+ H ++ P+ +D +
Sbjct: 9 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 67
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
E+ + ++VVI AG +KPG +R +L NI+K ++ + P+A +I+
Sbjct: 68 DDPEIC---RDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ IA V ++ ++FG T LD R +AQ+ + + +V + G H
Sbjct: 125 NPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIAGEH 180
Query: 270 AGITILPLL-SKTMPSVSFTD------------EEVGDLTVRIQNAGTEVVEAKAGAGSA 316
G + +PL S T+ V +D ++ ++ ++NA +++ K G+
Sbjct: 181 -GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK---GAT 236
Query: 317 TLSMAYAAARFVESSLR 333
++ + +E+ L
Sbjct: 237 NYAIGMSGVDIIEAVLH 253
>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Nadh
pdb|2X0J|A Chain A, 2.8 A Resolution Structure Of Malate Dehydrogenase From
Archaeoglobus Fulgidus In Complex With Etheno-Nad
Length = 294
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 101 AAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELAS 157
AG +G A ++ V + L D+ G A DL+H + G + S
Sbjct: 7 GAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-S 65
Query: 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
LKG ++V+ AG+ RKPGMTR DL + NA I+K + + + +N P++ I +++NP++
Sbjct: 66 LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD 122
>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
pdb|8LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 330
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 26/261 (9%)
Query: 89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
+P++ K+ V+G G +G A+ I M L + L DVM +KG DL H +T
Sbjct: 17 EPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHT 75
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
V +G + SA G +VVI AG ++ G +R +L N NI K ++ + + P
Sbjct: 76 AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 130
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
D I ++SNPV+ +A K G+ + + LD R + ++ +
Sbjct: 131 DCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCH 187
Query: 263 VPVVGGH--------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
V+G H +G+ + + + + ++ L + ++ EV++ K G
Sbjct: 188 GWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---G 244
Query: 315 SATLSMAYAAARFVESSLRAL 335
+ ++ + A E+ ++ L
Sbjct: 245 YTSWAIGLSVADLAETIMKNL 265
>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate
Dehydrogenase
Length = 329
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 115/261 (44%), Gaps = 26/261 (9%)
Query: 89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
+P++ K+ V+G G +G A+ I M L + L DVM +KG DL H +T
Sbjct: 16 EPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHT 74
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
V +G + SA G +VVI AG ++ G +R +L N NI K ++ + + P
Sbjct: 75 AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 129
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
D I ++SNPV+ +A K G+ + + LD R + ++ +
Sbjct: 130 DCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCSCH 186
Query: 263 VPVVGGH--------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
V+G H +G+ + + + + ++ L + ++ EV++ K G
Sbjct: 187 GWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKLK---G 243
Query: 315 SATLSMAYAAARFVESSLRAL 335
+ ++ + A E+ ++ L
Sbjct: 244 YTSWAIGLSVADLAETIMKNL 264
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 105/251 (41%), Gaps = 35/251 (13%)
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G ELA A VV++ AG +KPG +R DL NA+I + LV + PDA + + S
Sbjct: 61 GHSELADA----QVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPV+ +A ++ + V + T LD R +AQ + V+G H
Sbjct: 117 NPVDLLTDLATQLAPGQPV-----IGSGTVLDSARFRHLMAQHAGVDGTHAHGYVLGEHG 171
Query: 271 GITILPLLSKT---MPSVSF-------TDEEV-GDLTVRIQNAGTEVVEAKAGAGSATLS 319
+L S MP F +E+V + +NA ++E K +
Sbjct: 172 DSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGKR---ATYYG 228
Query: 320 MAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFAS--RVKLGRNGVESLISSDLQ 377
+ A AR E+ LR D + V + E S RV +GR GV S + L
Sbjct: 229 IGAALARITEAVLR------DRRAVLTVSAPTPEYGVSLSLPRV-VGRQGVLSTLHPKLT 281
Query: 378 GLTEYEQKALE 388
G EQ+ LE
Sbjct: 282 G---DEQQKLE 289
>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|B Chain B, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|C Chain C, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|D Chain D, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|E Chain E, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|F Chain F, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|G Chain G, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|3H3F|H Chain H, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh
And Oxamate
pdb|4I8X|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I8X|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap27460
pdb|4I9H|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9H|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28669
pdb|4I9N|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9N|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With Ap28161
And Ap28122
pdb|4I9U|A Chain A, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|B Chain B, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|C Chain C, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|D Chain D, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|E Chain E, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|F Chain F, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|G Chain G, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
pdb|4I9U|H Chain H, Crystal Structure Of Rabbit Ldha In Complex With A
Fragment Inhibitor Ap26256
Length = 331
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 143/350 (40%), Gaps = 41/350 (11%)
Query: 67 SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
+AL+ E PQ K+ V+G G +G A+ I M L L L D
Sbjct: 1 AALKDQLIHNLLKEEHVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
VM +KG DL H TP V +G + +A +V+I AG ++ G +R
Sbjct: 52 VMEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYSVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
+L N NI K ++ V P + ++SNPV+ +A ++ G + +
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPHCKLLVVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
LD R + ++ + + ++G H +G+ + + KT+ TD
Sbjct: 164 LDSARFRYLMGERLGVHALSCHGWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDADK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
E+ + ++ ++ EV++ K G T ++ + A ES ++ L + +
Sbjct: 224 EQWKQVHKQVVDSAYEVIKLK---GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
+ E F + LG+NG+ ++ L E K L ++ EL+
Sbjct: 281 GIKEDVFLSVPCVLGQNGISDVVKVTLTSEEEAHLKKSADTLWGIQKELQ 330
>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1IZ9|B Chain B, Crystal Structure Of Malate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|1Y7T|A Chain A, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|1Y7T|B Chain B, Crystal Structure Of Nad(H)-Depenent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|A Chain A, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
pdb|2CVQ|B Chain B, Crystal Structure Of Nad(H)-Dependent Malate Dehydrogenase
Complexed With Nadph
Length = 327
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVMN----VKGVAADLSHCN 141
+A +VAV GAAG IG L I ++ L L ++ ++GV +L C
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
P + ++ A K + ++ PRK GM R DL +N I A+A+
Sbjct: 62 FPL-LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
D + ++ NP N+ IA K +P+ +T LD RA +A+K +
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
+ V G+ T+ P L P++ D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
pdb|1BMD|B Chain B, Determinants Of Protein Thermostability Observed In The
1.9 Angstroms Crystal Structure Of Malate Dehydrogenase
From The Thermophilic Bacterium Thermus Flavus
Length = 327
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 91 QASFKVAVLGAAGGIGQPL-------ALLIKMSPLV-SALHLYDVMN-VKGVAADLSHCN 141
+A +VAV GAAG IG L +L K P++ L + M ++GV +L C
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
P + ++ A K + ++ PRK GM R DL +N I A+A+
Sbjct: 62 FPL-LAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
D + ++ NP N+ IA K +P+ +T LD RA +A+K +
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
+ V G+ T+ P L P++ D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|B Chain B, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|C Chain C, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|D Chain D, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|E Chain E, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|F Chain F, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|G Chain G, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I10|H Chain H, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary
Complex With Nadh And Oxamate
Length = 331
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 67 SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
+ L+ EQ PQ K+ V+G G +G A+ I M L L L D
Sbjct: 1 ATLKDQLIYNLLKEEQTPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
V+ +KG DL H TP V +G + +A +V+I AG ++ G +R
Sbjct: 52 VIEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYNVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
+L N NI K ++ V P+ + I+SNPV+ +A ++ G + +
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
LD R + ++ + + V+G H +G+ + + KT+ TD
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
E+ ++ ++ + EV++ K G + ++ + A ES ++ L V +
Sbjct: 224 EQWKEVHKQVVESAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
+ + F + LG+NG+ L+ L E K L ++ EL+
Sbjct: 281 GIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ 330
>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|B Chain B, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|C Chain C, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJP|D Chain D, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
Length = 337
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 81/350 (23%), Positives = 144/350 (41%), Gaps = 41/350 (11%)
Query: 67 SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
+ L+ EQ PQ K+ V+G G +G A+ I M L L L D
Sbjct: 1 ATLKDQLIYNLLKEEQTPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSH----CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRD 180
V+ +KG DL H TP V +G + +A +V+I AG ++ G +R
Sbjct: 52 VIEDKLKGEMMDLQHGSLFLRTPKIV---SGKDYNVTA--NSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
+L N NI K ++ V P+ + I+SNPV+ +A ++ G + +
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPNCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
LD R + ++ + + V+G H +G+ + + KT+ TD
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLKTLHPDLGTDKDK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
E+ ++ ++ + EV++ K G + ++ + A ES ++ L V +
Sbjct: 224 EQWKEVHKQVVESAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQK----ALEALKPELK 395
+ + F + LG+NG+ L+ L E K L ++ EL+
Sbjct: 281 GIKDDVFLSVPCILGQNGISDLVKVTLTSEEEARLKKSADTLWGIQKELQ 330
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 67 SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
+AL+ EQ PQ K+ V+G G +G A+ I M L L L D
Sbjct: 2 AALKDQLIVNLLKEEQVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 52
Query: 127 VM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVN----VVVIPAGVPRKPGMTRD 180
V+ +KG DL H + L P+ ++S V +V+I AG ++ G +R
Sbjct: 53 VIEDKLKGEMMDLQHGS-----LFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRL 107
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
+L N NI K ++ V P + I+SNPV+ +A ++ G + +
Sbjct: 108 NLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 164
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
LD R + ++ + + V+G H +G+ + + K++ TD
Sbjct: 165 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADK 224
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
E+ D+ ++ ++ EV++ K G + ++ + A ES ++ L + +
Sbjct: 225 EQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLY 281
Query: 350 NLTELPFFASRVKLGRNGVESLISSDL 376
+ E F + LG+NG+ ++ L
Sbjct: 282 GIKEDVFLSVPCILGQNGISDVVKVTL 308
>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZE|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
pdb|1WZI|B Chain B, Structural Basis For Alteration Of Cofactor Specificity Of
Malate Dehydrogenase From Thermus Flavus
Length = 327
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 18/215 (8%)
Query: 91 QASFKVAVLGAAGGIGQPL-------ALLIKMSPLVSAL--HLYDVMNVKGVAADLSHCN 141
+A +VAV GAAG IG L +L K P++ L ++GV +L C
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLGSERSFQALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
P + ++ A K + ++ PRK GM R DL +N I A+A+
Sbjct: 62 FPL-LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
D + ++ NP N+ IA K +P+ +T LD RA +A+K +
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEE 291
+ V G+ T+ P L P++ D E
Sbjct: 178 IRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDME 212
>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|B Chain B, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|C Chain C, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ1|D Chain D, Rat Ldha In Complex With N-(2-(Methylamino)-1,3-
Benzothiazol-6-Yl)acetamide
pdb|4AJ2|A Chain A, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|B Chain B, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|C Chain C, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJ2|D Chain D, Rat Ldha In Complex With 5-(2-Chlorophenyl)-1h-Tetrazole
pdb|4AJE|A Chain A, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|B Chain B, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|C Chain C, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJE|D Chain D, Rat Ldha In Complex With 2-(4-Bromophenoxy)propanedioic
Acid
pdb|4AJH|A Chain A, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|B Chain B, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|C Chain C, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJH|D Chain D, Rat Ldha In Complex With
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3-Ureido- Propanamide
And 2-(4-Bromophenoxy)propanedioic Acid
pdb|4AJI|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJI|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid
pdb|4AJJ|A Chain A, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|B Chain B, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|C Chain C, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJJ|D Chain D, Rat Ldha In Complex With 2-((3,4-Dimethoxyphenyl)methyl))
Propanedioic Acid And
N-(2-Methyl-1,3-Benzothiazol-6-Yl)-3- Ureido-Propanamide
pdb|4AJK|A Chain A, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|B Chain B, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|C Chain C, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJK|D Chain D, Rat Ldha In Complex With
N-(2-(Methylamino)-1,3-Benzothiazol-6-Yl) Acetamide
pdb|4AJL|A Chain A, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|B Chain B, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|C Chain C, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJL|D Chain D, Rat Ldha In Complex With
3-(Ethylcarbamoylamino)-N-(2-Methyl-1,3-
Benzothiazol-6-Yl)propanamide
pdb|4AJN|A Chain A, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|B Chain B, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|C Chain C, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJN|D Chain D, Rat Ldha In Complex With 2-((4-(2-((3-((2-Methyl-1,3-
Benzothiazol-6-Yl)amino)-3-Oxo-
Propyl)carbamoylamino)ethyl) Phenyl)methyl)propanedioic
Acid
pdb|4AJO|A Chain A, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|B Chain B, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|C Chain C, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AJO|D Chain D, Rat Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3-
Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl)
Phenyl)methyl)propanedioic Acid
pdb|4AL4|A Chain A, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|B Chain B, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|C Chain C, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
pdb|4AL4|D Chain D, Rat Ldha In Complex With
2-((4-(2-((3-((2-Methyl-1,3-Benzothiazol-6-
Yl)amino)3-Oxo-Propyl)carbamoylamino)ethoxy) Phenyl)
Methylpropanedioic Acid
Length = 331
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 137/327 (41%), Gaps = 37/327 (11%)
Query: 67 SALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126
+AL+ EQ PQ K+ V+G G +G A+ I M L L L D
Sbjct: 1 AALKDQLIVNLLKEEQVPQN--------KITVVGV-GAVGMACAISILMKDLADELALVD 51
Query: 127 VM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVN----VVVIPAGVPRKPGMTRD 180
V+ +KG DL H + L P+ ++S V +V+I AG ++ G +R
Sbjct: 52 VIEDKLKGEMMDLQHGS-----LFLKTPKIVSSKDYSVTANSKLVIITAGARQQEGESRL 106
Query: 181 DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240
+L N NI K ++ V P + I+SNPV+ +A ++ G + +
Sbjct: 107 NLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKI---SGFPKNRVIGSGCN 163
Query: 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTMPSVSFTD--- 289
LD R + ++ + + V+G H +G+ + + K++ TD
Sbjct: 164 LDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDADK 223
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES 349
E+ D+ ++ ++ EV++ K G + ++ + A ES ++ L + +
Sbjct: 224 EQWKDVHKQVVDSAYEVIKLK---GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLY 280
Query: 350 NLTELPFFASRVKLGRNGVESLISSDL 376
+ E F + LG+NG+ ++ L
Sbjct: 281 GIKEDVFLSVPCILGQNGISDVVKVTL 307
>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
pdb|1BDM|B Chain B, The Structure At 1.8 Angstroms Resolution Of A Single Site
Mutant (T189i) Of Malate Dehydrogenase From Thermus
Flavus With Increased Enzymatic Activity
Length = 327
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 18/215 (8%)
Query: 91 QASFKVAVLGAAGGIGQPL-------ALLIKMSPLV-SALHLYDVMN-VKGVAADLSHCN 141
+A +VAV GAAG IG L +L K P++ L + M ++GV +L C
Sbjct: 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCA 61
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
P + ++ A K + ++ PRK GM R DL +N I A+A+
Sbjct: 62 FPL-LAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
D + ++ NP N+ IA K +P+ +T LD RA +A+K +
Sbjct: 121 KKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDR 177
Query: 261 V-DVPVVGGHAGITILPLLSKTM---PSVSFTDEE 291
+ + V G H+ I L + P++ D E
Sbjct: 178 IRRMTVWGNHSSIMFPDLFHAEVDGRPALELVDME 212
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 111/254 (43%), Gaps = 26/254 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
KVA++GA G +G A + + L + DV K G DL+H P V
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G E K ++V I AG +KPG TR +L N I K +V V + D + +
Sbjct: 66 GTYE---DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR-----ANTFVAQKKNL--KLI---- 259
NPV+ + K G+ + + TTLD R + F A +N+ +I
Sbjct: 123 NPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEHG 179
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
D ++P V HA + +P+ + ++ EE+ + ++NA ++E K G+
Sbjct: 180 DTELP-VWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYG 235
Query: 320 MAYAAARFVESSLR 333
+A + AR ++ L
Sbjct: 236 VAMSLARITKAILH 249
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus
Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 111/254 (43%), Gaps = 26/254 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
KVA++GA G +G A + + L + DV K G DL+H P V
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G E K ++V I AG +KPG TR +L N I K +V V + D + +
Sbjct: 66 GTYE---DCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVR-----ANTFVAQKKNL--KLI---- 259
NPV+ + K G+ + + TTLD R + F A +N+ +I
Sbjct: 123 NPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEHG 179
Query: 260 DVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
D ++P V HA + +P+ + ++ EE+ + ++NA ++E K G+
Sbjct: 180 DTELP-VWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GATYYG 235
Query: 320 MAYAAARFVESSLR 333
+A + AR ++ L
Sbjct: 236 VAMSLARITKAILH 249
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 29/258 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQVLD 148
K+ V+G G +G A+ I L L L DV+ +KG DL H TP V D
Sbjct: 22 KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ S +VV+ AGV ++ G +R +L N N+ K ++ + PD I +
Sbjct: 81 -----KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+SNPV+ + K G+ + + LD R +A+K + ++G
Sbjct: 136 VSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 269 HAGITILPLLSKTMPSVSFTD-----------EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
H ++ + VS + E ++ + + EV++ K G
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTN 249
Query: 318 LSMAYAAARFVESSLRAL 335
++ + A +ES L+ L
Sbjct: 250 WAIGLSVADLIESMLKNL 267
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 105/258 (40%), Gaps = 29/258 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSH----CNTPSQVLD 148
K+ V+G G +G A+ I L L L DV+ +KG DL H TP V D
Sbjct: 22 KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ S +VV+ AGV ++ G +R +L N N+ K ++ + PD I +
Sbjct: 81 -----KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+SNPV+ + K G+ + + LD R +A+K + ++G
Sbjct: 136 VSNPVDILTYVT---WKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGE 192
Query: 269 HAGITILPLLSKTMPSVSFTD-----------EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
H ++ + VS + E ++ + + EV++ K G
Sbjct: 193 HGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTN 249
Query: 318 LSMAYAAARFVESSLRAL 335
++ + A +ES L+ L
Sbjct: 250 WAIGLSVADLIESMLKNL 267
>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|B Chain B, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|C Chain C, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|D Chain D, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|E Chain E, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|F Chain F, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|G Chain G, Structure Of Tt0471 Protein From Thermus Thermophilus
pdb|2E37|H Chain H, Structure Of Tt0471 Protein From Thermus Thermophilus
Length = 310
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
L+G VV+ AGV ++PG TR L + NA + +V V + P+A + + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
+A + G+ P ++ G T LD R +A+ + V V+G H +L
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
S +P + F + E+ + ++ A ++E K G+ + AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
V + L
Sbjct: 238 LVRAIL 243
>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V6M|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Apo Form)
pdb|2V7P|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|B Chain B, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|C Chain C, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
pdb|2V7P|D Chain D, Crystal Structure Of Lactate Dehydrogenase From Thermus
Thermophilus Hb8 (Holo Form)
Length = 310
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
L+G VV+ AGV ++PG TR L + NA + +V V + P+A + + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
+A + G+ P ++ G T LD R +A+ + V V+G H +L
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
S +P + F + E+ + ++ A ++E K G+ + AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
V + L
Sbjct: 238 LVRAIL 243
>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|B Chain B, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|C Chain C, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
pdb|4A73|D Chain D, Single Point Mutant Of Thermus Thermophilus Lactate
Dehydrogenase
Length = 310
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
L+G VV+ AGV ++PG TR L + NA + +V V + P+A + + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
+A + G+ P ++ G T LD R +A+ + V V+G H +L
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
S +P + F + E+ + ++ A ++E K G+ + AR
Sbjct: 181 SSAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
V + L
Sbjct: 238 LVRAIL 243
>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|B Chain B, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|C Chain C, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
pdb|2LDX|D Chain D, Characterization Of The Antigenic Sites On The Refined 3-
Angstroms Resolution Structure Of Mouse Testicular
Lactate Dehydrogenase C4
Length = 331
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 130/322 (40%), Gaps = 33/322 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYD--VMNVKGVAADLSH----CNTPSQVLD 148
K+ V+G G +G A+ I + L L L D ++G A DL H +TP V
Sbjct: 21 KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF- 78
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
G + SA +V+I AG G TR DL N I+K +V V N PD I +
Sbjct: 79 --GKDYNVSA--NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIV 134
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
++NPV+ + V K G + + LD R + +K + V+G
Sbjct: 135 VTNPVDILTYV---VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGE 191
Query: 269 H--------AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
H +G+ + + K++ TD + ++ ++ G EV++ K G +
Sbjct: 192 HGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYTS 248
Query: 318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL- 376
++ + S L+ L V V + E F + LG +G+ + ++
Sbjct: 249 WAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMT 308
Query: 377 ---QGLTEYEQKALEALKPELK 395
+GL + L ++ L+
Sbjct: 309 AEEEGLLKKSADTLWNMQKNLE 330
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 29/299 (9%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNTPSQVLD 148
K+ V+G G +G A+ I M L + L DVM +KG DL H TP V
Sbjct: 22 KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRTPKIV-- 78
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+G + +A +VVI AG ++ G +R +L N NI K ++ + P+ + +
Sbjct: 79 -SGKDYNVTA--NSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLLV 135
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+SNPV+ +A ++ G + + LD R + ++ + + ++G
Sbjct: 136 VSNPVDILTYVAWKI---SGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWILGE 192
Query: 269 H--------AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
H +G+ + + K + TD E + + ++ EV++ K G +
Sbjct: 193 HGDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---GYTS 249
Query: 318 LSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL 376
++ + A ES ++ L + + + E F + LG+NG+ ++ L
Sbjct: 250 WAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKVTL 308
>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXB|B Chain B, Penta-Mutant Of Thermus Thermophilus Lactate
Dehydrogenase, Complex With Amp
pdb|2XXJ|A Chain A, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|B Chain B, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|C Chain C, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|2XXJ|D Chain D, Penta Mutant Of Lactate Dehydrogenase From Thermus
Thermophilus, Ternary Complex
pdb|3ZZN|A Chain A, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|B Chain B, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|C Chain C, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
pdb|3ZZN|D Chain D, 5-Mutant (R79w, R151a, E279a, E299a,E313a)
Lactate-Dehydrogenase From Thermus Thermophillus
Length = 310
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 19/186 (10%)
Query: 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVP 218
L+G VV+ AGV ++PG TR L + NA + +V V + P+A + + +NPV+
Sbjct: 65 LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 219 IAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPL 277
+A + G+ P ++ G T LD R +A+ + V V+G H +L
Sbjct: 125 VAYAL---SGL-PPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVW 180
Query: 278 LSKT---MPSVSFTD--------EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326
S +P + F + E+ + ++ A ++E K G+ + AR
Sbjct: 181 SSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATYYGIGAGLAR 237
Query: 327 FVESSL 332
V + L
Sbjct: 238 LVRAIL 243
>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|1LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|A Chain A, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|B Chain B, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|C Chain C, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
pdb|2LDB|D Chain D, Structure Determination And Refinement Of Bacillus
Stearothermophilus Lactate Dehydrogenase
Length = 317
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
+V V+GA G +G + + + L D K G A D +H P V +
Sbjct: 8 RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G + + ++VVI AG +KPG TR DL + N I +++VE+V + + +
Sbjct: 67 GDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPV+ + K G+ + + T LD R + + ++ +V ++G H
Sbjct: 124 NPVD---ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH- 179
Query: 271 GITILPLLSKTMPSV--------SFTDEEVGDLT---VRIQNAGTEVVEAKAGAGSATLS 319
G T LP+ S+ V S +E DL V +++A +++E K G+
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYG 236
Query: 320 MAYAAARF-------------VESSLRALDGDGDVY 342
+A AR V + L L G+ DVY
Sbjct: 237 IAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY 272
>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari
pdb|2V65|B Chain B, Apo Ldh From The Psychrophile C. Gunnari
Length = 331
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 123/296 (41%), Gaps = 24/296 (8%)
Query: 110 ALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI 167
A+ I + L L + DVM +KG DL H + + G ++ S VVV+
Sbjct: 36 AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKT-KIVGDKDY-SVTANSKVVVV 93
Query: 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQK 227
AG ++ G +R +L N NI K ++ + P+ + ++SNPV+ +A K
Sbjct: 94 TAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WKLS 150
Query: 228 GVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSK-TMPSVS 286
G + + T LD R + +K +L +VG H G + +P+ S + VS
Sbjct: 151 GFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEH-GDSSVPVWSGVNVAGVS 209
Query: 287 FT-----------DEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRAL 335
E + + + EV++ K G + ++ + A VES ++ +
Sbjct: 210 LQGLNPQMGTEGDGENWKAIHKEVVDGAYEVIKLK---GYTSWAIGMSVADLVESIIKNM 266
Query: 336 DGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYE-QKALEAL 390
V V + + F + LG +G+ +I L+ E + QK+ E L
Sbjct: 267 HKVHPVSTLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHMTLKAEEEKQLQKSAETL 322
>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|B Chain B, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|C Chain C, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|D Chain D, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|E Chain E, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|F Chain F, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|G Chain G, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
pdb|1LDN|H Chain H, Structure Of A Ternary Complex Of An Allosteric Lactate
Dehydrogenase From Bacillus Stearothermophilus At 2.5
Angstroms Resolution
Length = 316
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 116/276 (42%), Gaps = 39/276 (14%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNT--PSQVLDFT 150
+V V+GA G +G + + + L D K G A D +H P V +
Sbjct: 8 RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G + + ++VVI AG +KPG TR DL + N I +++VE+V + + +
Sbjct: 67 GDYD---DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPV+ + K G+ + + T LD R + + ++ +V ++G H
Sbjct: 124 NPVD---ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH- 179
Query: 271 GITILPLLSKTMPSV--------SFTDEEVGDLT---VRIQNAGTEVVEAKAGAGSATLS 319
G T LP+ S+ V S +E DL V +++A +++E K G+
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GATYYG 236
Query: 320 MAYAAARF-------------VESSLRALDGDGDVY 342
+A AR V + L L G+ DVY
Sbjct: 237 IAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY 272
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 108/254 (42%), Gaps = 21/254 (8%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ V+G G +G A+ I L L L DV+ +KG DL H + Q
Sbjct: 23 KITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAN 81
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
++ S +VV+ AGV ++ G +R +L N N+ K ++ + P+ I ++SNP
Sbjct: 82 KDY-SVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIIIVVSNP 140
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--- 269
V+ +A K G+ + + LD R + +K + ++G H
Sbjct: 141 VDILTYVA---WKLSGLPKHRVIGSGCNLDSARFRYLMGEKLGVHPSSCHGWILGEHGDS 197
Query: 270 -----AGITILPLLSKTMPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
+G+ + ++ + + TD E ++ + + EV++ K G ++
Sbjct: 198 SVAVWSGVNVAGVVLQQLNPEMGTDNDSENWKEVHKMVVESAYEVIKLK---GYTNWAIG 254
Query: 322 YAAARFVESSLRAL 335
+ A +ES L+ L
Sbjct: 255 LSVADLIESMLKNL 268
>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
pdb|1V6A|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus
Carpio
Length = 332
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 117/278 (42%), Gaps = 20/278 (7%)
Query: 113 IKMSPLVSALHLYDVM--NVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170
I + L L L DVM +KG A DL H + + ++ S VVV+ AG
Sbjct: 39 ILLKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVADKDY-SVTANSKVVVVTAG 97
Query: 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVY 230
++ G +R +L N NI K ++ + P+ + ++SNPV+ +A K G+
Sbjct: 98 ARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSGLP 154
Query: 231 DPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGH--------AGITILPLLSKTM 282
+ + T LD R + +K + + V+G H +G+ + + + +
Sbjct: 155 RNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQGL 214
Query: 283 PSVSFTDEEVGDLTV---RIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDG 339
TD++ D + ++ EV++ K G + ++ +AA +S L+ L
Sbjct: 215 NPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSILKNLRKCH 271
Query: 340 DVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQ 377
V V + E F + LG +G+ ++ L+
Sbjct: 272 PVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLK 309
>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From
Flaveria Bidentis
Length = 385
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 172 PRKPGMTRDDLFNINANIVKTLVEAV-ADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVY 230
PR PGM R DL +IN I +A+ A P+ + ++ NP N+ I LK
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 231 DPKKLFGVTTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGITILPLLSKTMPSVSFTD 289
PK +T LD RA +A K + V +V + G H+ + L+ + + T
Sbjct: 186 PPKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIHGIPVT- 244
Query: 290 EEVGDLTVRIQNAGTEVVEAKAG 312
EV +++ T +V+ + G
Sbjct: 245 -EVIRDRKWLEDEFTNMVQTRGG 266
>pdb|3LDH|A Chain A, A Comparison Of The Structures Of Apo Dogfish M4 Lactate
Dehydrogenase And Its Ternary Complexes
Length = 330
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM--NVKGVAADLSH----CNT 142
+P++ K+ V+G +G A+ + M L + L DVM +KG DL H +T
Sbjct: 17 EPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHT 75
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
V +G + SA G +VVI AG ++ G +R +L N NI K ++ + + P
Sbjct: 76 AKIV---SGKDYSVSA--GSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSP 130
Query: 203 DAF 205
D
Sbjct: 131 DCL 133
>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|B Chain B, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|C Chain C, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
pdb|7MDH|D Chain D, Structural Basis For Light Acitvation Of A Chloroplast
Enzyme. The Structure Of Sorghum Nadp-Malate
Dehydrogenase In Its Oxidized Form
Length = 375
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 104/250 (41%), Gaps = 32/250 (12%)
Query: 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP--SQVLDFTG 151
FK+A G G QP+AL L+ + + + +GVA +L P +V
Sbjct: 50 FKLAS-GEVFGQDQPIAL-----KLLGSERSFQAL--EGVAMELEDSLYPLLREVSIGID 101
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV-ADNCPDAFIHIIS 210
P E+ + V+ ++ PR PGM R L +IN I +A+ A + + ++
Sbjct: 102 PYEV---FEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 158
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDV-DVPVVGGH 269
NP N+ I LK K +T LD RA +A K + V +V + G H
Sbjct: 159 NPCNTNALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 215
Query: 270 AGITILPLLS---------KTMPSVSFTDEEVGDLTVRIQNAGTEVVE--AKAGAGSATL 318
+ + L+ + + + +EE T+ +Q G +++ ++ A S +
Sbjct: 216 STTQVPDFLNAKIDGRPVKEVIKRTKWLEEE---FTITVQKRGGALIQKWGRSSAASTAV 272
Query: 319 SMAYAAARFV 328
S+A A V
Sbjct: 273 SIADAIKSLV 282
>pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|C Chain C, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
pdb|3GRP|D Chain D, 2.1 Angstrom Crystal Structure Of
3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From
Bartonella Henselae
Length = 266
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 12/111 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH--CNTPSQVLDFTGP 152
K V GA GGIG+ +A + LH +K +AADL + + D
Sbjct: 29 KALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSI 88
Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTR------DDLFNINANIVKTL 193
++LA ++G++++V AG+ R R DD+ +N TL
Sbjct: 89 KQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTL 139
>pdb|1PFF|A Chain A, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
pdb|1PFF|B Chain B, Crystal Structure Of Homocysteine Alpha-, Gamma-Lyase At
1.8 Angstroms
Length = 331
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 6/134 (4%)
Query: 41 VSFSGLKAVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLG 100
V G+K +T I + ++L L R A+++++ ++ + +A KV G
Sbjct: 168 VKSQGIKDITGAIISPHDAWLITRGTLTLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPG 227
Query: 101 AAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK 160
G +A K + ++ +DV ++ L +C+ S + GPE L
Sbjct: 228 LPDHPGHEIAK--KQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPA 285
Query: 161 GVNVVVIPAGVPRK 174
+ AGVP++
Sbjct: 286 SMT----HAGVPKE 295
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
KGV ++I G+ RKP T+ L N ++ L EAV
Sbjct: 504 KGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAV 541
>pdb|1XFU|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
pdb|1XFU|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) Truncation
Mutant, Ef-delta 64 In Complex With Calmodulin
Length = 747
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
KGV ++I G+ RKP T+ L N ++ L EAV
Sbjct: 474 KGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAV 511
>pdb|1K8T|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef)
pdb|1K90|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K90|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
3' Deoxy-Atp
pdb|1K93|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1K93|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin
pdb|1LVC|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1LVC|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin And
2' Deoxy, 3' Anthraniloyl Atp
pdb|1S26|A Chain A, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|B Chain B, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1S26|C Chain C, Structure Of Anthrax Edema Factor-calmodulin-alpha,beta-
Methyleneadenosine 5'-triphosphate Complex Reveals An
Alternative Mode Of Atp Binding To The Catalytic Site
pdb|1SK6|A Chain A, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|B Chain B, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
pdb|1SK6|C Chain C, Crystal Structure Of The Adenylyl Cyclase Domain Of
Anthrax Edema Factor (Ef) In Complex With Calmodulin,
3',5' Cyclic Amp (Camp), And Pyrophosphate
Length = 510
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
KGV ++I G+ RKP T+ L N ++ L EAV
Sbjct: 237 KGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAV 274
>pdb|1PK0|A Chain A, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|B Chain B, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
pdb|1PK0|C Chain C, Crystal Structure Of The Ef3-Cam Complexed With Pmeapp
Length = 507
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
KGV ++I G+ RKP T+ L N ++ L EAV
Sbjct: 236 KGVTNLLIKYGIERKPDSTKGTLSNWQKQMLDRLNEAV 273
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 156 ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI-ISNPVN 214
A+A K +VVV +G P + + DD+ + ++++ E +N HI + V+
Sbjct: 191 ATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVD 250
Query: 215 STV----PIAAEVLKQKG--VYD-------PKKLFGVTTL 241
T+ A+V+ KG V+D P+KL VT L
Sbjct: 251 CTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRL 290
>pdb|2IIR|A Chain A, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|B Chain B, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|C Chain C, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|D Chain D, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|E Chain E, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|F Chain F, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|G Chain G, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|H Chain H, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|I Chain I, Acetate Kinase From A Hypothermophile Thermotoga Maritima
pdb|2IIR|J Chain J, Acetate Kinase From A Hypothermophile Thermotoga Maritima
Length = 403
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 98 VLGAAGGIGQP-LALLIKMSPLVSALHLYDVMN--------VKGVAADL----------- 137
V+G G P + I +S +YD++N KG ++D+
Sbjct: 236 VMGTRSGDLDPAIPFFIMEKEGISPQEMYDILNKKSGVYGLSKGFSSDMRDIEEAALKGD 295
Query: 138 SHCNTPSQVLDFTGPEEL---ASALKGVNVVVIPAGVPRKPGMTRDDL 182
C ++ D+ + + A+A+ GV+ +V AGV +TR+D+
Sbjct: 296 EWCKLVLEIYDYRIAKYIGAYAAAMNGVDAIVFTAGVGENSPITREDV 343
>pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|B Chain B, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|C Chain C, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
pdb|3ENN|D Chain D, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
FROM BRUCELLA Melitensis (P43212)
Length = 249
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH--CNTPSQVLDFTGP 152
K V GA GG+G+ +A + + LH +K +AA+L P+ + D
Sbjct: 12 KALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAELGERIFVFPANLSDREAV 71
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLF 183
+ L + GV+++V AG+ TRD LF
Sbjct: 72 KALGQKAEEEMGGVDILVNNAGI------TRDGLF 100
>pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|B Chain B, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|C Chain C, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
pdb|3EMK|D Chain D, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE
From Brucella Melitensis
Length = 246
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 12/95 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH--CNTPSQVLDFTGP 152
K V GA GG+G+ +A + + LH +K +AA+L P+ + D
Sbjct: 9 KALVTGATGGLGEAIARALHAQGAIVGLHGTREEKLKELAAELGERIFVFPANLSDREAV 68
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLF 183
+ L + GV+++V AG+ TRD LF
Sbjct: 69 KALGQKAEEEMGGVDILVNNAGI------TRDGLF 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,380,563
Number of Sequences: 62578
Number of extensions: 404864
Number of successful extensions: 1293
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 109
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)