Query 015172
Match_columns 412
No_of_seqs 286 out of 1602
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 03:47:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1494 NAD-dependent malate d 100.0 4.8E-70 1E-74 515.8 31.5 318 90-409 25-343 (345)
2 cd01337 MDH_glyoxysomal_mitoch 100.0 1.2E-67 2.6E-72 521.8 31.3 309 94-405 1-310 (310)
3 TIGR01772 MDH_euk_gproteo mala 100.0 4.1E-67 8.9E-72 518.7 32.3 309 95-406 1-311 (312)
4 COG0039 Mdh Malate/lactate deh 100.0 7.6E-66 1.6E-70 505.1 28.9 297 94-405 1-311 (313)
5 PLN00106 malate dehydrogenase 100.0 2.2E-64 4.9E-69 501.1 33.5 305 93-399 18-322 (323)
6 PTZ00325 malate dehydrogenase; 100.0 8.1E-62 1.8E-66 482.4 33.7 313 91-408 6-320 (321)
7 PRK05086 malate dehydrogenase; 100.0 3E-61 6.6E-66 478.0 32.7 310 94-407 1-312 (312)
8 cd05290 LDH_3 A subgroup of L- 100.0 2.1E-61 4.5E-66 477.7 29.0 286 95-398 1-306 (307)
9 cd05293 LDH_1 A subgroup of L- 100.0 8.5E-61 1.8E-65 474.5 30.3 291 93-399 3-311 (312)
10 TIGR01759 MalateDH-SF1 malate 100.0 5.7E-61 1.2E-65 477.3 27.9 297 92-401 2-323 (323)
11 PLN02602 lactate dehydrogenase 100.0 4.5E-60 9.7E-65 475.0 31.4 291 94-400 38-347 (350)
12 KOG1495 Lactate dehydrogenase 100.0 3.4E-60 7.4E-65 446.9 27.6 291 91-397 18-326 (332)
13 TIGR01771 L-LDH-NAD L-lactate 100.0 3.3E-60 7.1E-65 467.9 25.2 282 98-396 1-299 (299)
14 PRK05442 malate dehydrogenase; 100.0 1.9E-59 4.2E-64 466.8 27.9 298 92-404 3-325 (326)
15 PRK00066 ldh L-lactate dehydro 100.0 9.9E-59 2.1E-63 460.6 30.9 290 93-400 6-312 (315)
16 cd00300 LDH_like L-lactate deh 100.0 1.7E-58 3.7E-63 456.2 27.3 287 96-398 1-299 (300)
17 PLN00112 malate dehydrogenase 100.0 2.8E-58 6.2E-63 471.7 29.2 303 91-406 98-425 (444)
18 PTZ00117 malate dehydrogenase; 100.0 1.8E-57 3.9E-62 452.5 33.0 297 92-403 4-316 (319)
19 cd00704 MDH Malate dehydrogena 100.0 3E-58 6.4E-63 458.2 27.1 294 94-402 1-323 (323)
20 PTZ00082 L-lactate dehydrogena 100.0 1.4E-57 3.1E-62 453.2 31.8 292 93-399 6-318 (321)
21 cd05291 HicDH_like L-2-hydroxy 100.0 1.2E-57 2.5E-62 451.4 29.9 288 94-399 1-305 (306)
22 TIGR01763 MalateDH_bact malate 100.0 9.1E-58 2E-62 451.9 28.5 291 94-399 2-303 (305)
23 cd01338 MDH_choloroplast_like 100.0 2.1E-57 4.5E-62 451.9 28.7 294 93-401 2-320 (322)
24 TIGR01757 Malate-DH_plant mala 100.0 2.9E-57 6.3E-62 458.1 29.5 300 93-405 44-368 (387)
25 cd05292 LDH_2 A subgroup of L- 100.0 2.8E-56 6E-61 442.0 30.7 288 94-399 1-306 (308)
26 TIGR01758 MDH_euk_cyt malate d 100.0 2.8E-55 6.1E-60 437.0 28.7 295 95-402 1-323 (324)
27 cd01339 LDH-like_MDH L-lactate 100.0 7.3E-55 1.6E-59 430.2 28.2 288 96-398 1-299 (300)
28 cd01336 MDH_cytoplasmic_cytoso 100.0 1.1E-54 2.3E-59 433.2 27.5 296 93-401 2-324 (325)
29 PRK06223 malate dehydrogenase; 100.0 4E-54 8.7E-59 425.7 29.9 293 93-400 2-305 (307)
30 cd05294 LDH-like_MDH_nadp A la 100.0 5.9E-54 1.3E-58 425.4 28.4 291 94-399 1-307 (309)
31 PLN00135 malate dehydrogenase 100.0 1E-52 2.2E-57 415.3 27.1 272 121-405 15-308 (309)
32 TIGR01756 LDH_protist lactate 100.0 2E-51 4.4E-56 407.0 26.6 275 115-405 13-312 (313)
33 cd05295 MDH_like Malate dehydr 100.0 5.5E-51 1.2E-55 417.9 26.6 293 92-401 122-450 (452)
34 cd00650 LDH_MDH_like NAD-depen 100.0 8E-49 1.7E-53 380.3 27.8 255 96-398 1-262 (263)
35 KOG1496 Malate dehydrogenase [ 100.0 1.5E-39 3.2E-44 302.8 21.2 301 93-405 4-330 (332)
36 PF02866 Ldh_1_C: lactate/mala 100.0 2.7E-32 5.8E-37 249.3 15.1 159 239-405 1-174 (174)
37 PF00056 Ldh_1_N: lactate/mala 100.0 1.4E-31 3.1E-36 236.8 12.1 139 94-237 1-141 (141)
38 PRK15076 alpha-galactosidase; 100.0 2.4E-27 5.2E-32 244.7 24.1 280 93-393 1-377 (431)
39 cd05296 GH4_P_beta_glucosidase 99.9 4.4E-25 9.5E-30 227.0 26.2 277 94-392 1-371 (419)
40 cd05197 GH4_glycoside_hydrolas 99.9 8.7E-25 1.9E-29 225.2 26.1 278 94-392 1-382 (425)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 6.3E-24 1.4E-28 219.3 27.3 284 94-393 1-386 (437)
42 cd05297 GH4_alpha_glucosidase_ 99.9 1.7E-23 3.8E-28 216.0 25.1 279 94-393 1-380 (423)
43 COG1486 CelF Alpha-galactosida 99.9 2E-21 4.3E-26 197.8 22.5 291 93-402 3-398 (442)
44 PF02056 Glyco_hydro_4: Family 99.7 2.9E-17 6.2E-22 150.9 14.6 152 95-256 1-183 (183)
45 TIGR02437 FadB fatty oxidation 99.7 6.4E-18 1.4E-22 184.7 11.9 155 61-240 281-451 (714)
46 TIGR02441 fa_ox_alpha_mit fatt 99.7 9E-18 2E-22 184.0 10.8 151 62-239 306-472 (737)
47 COG1250 FadB 3-hydroxyacyl-CoA 99.7 1.4E-16 3E-21 157.2 9.4 123 93-240 3-141 (307)
48 TIGR02440 FadJ fatty oxidation 99.7 1.6E-15 3.4E-20 165.8 16.7 155 60-240 272-443 (699)
49 PRK11730 fadB multifunctional 99.7 5E-16 1.1E-20 170.1 12.0 154 62-240 282-451 (715)
50 PRK11154 fadJ multifunctional 99.6 1.3E-15 2.8E-20 166.7 12.1 153 62-240 279-448 (708)
51 PF02737 3HCDH_N: 3-hydroxyacy 99.6 2.5E-15 5.3E-20 138.3 5.4 122 95-241 1-138 (180)
52 PRK07819 3-hydroxybutyryl-CoA 99.4 5.2E-13 1.1E-17 131.4 10.7 125 93-242 5-146 (286)
53 PRK07066 3-hydroxybutyryl-CoA 99.4 9.5E-13 2.1E-17 131.4 12.2 125 92-240 6-142 (321)
54 KOG2304 3-hydroxyacyl-CoA dehy 99.4 8.9E-14 1.9E-18 129.8 3.1 131 92-246 10-164 (298)
55 PRK08268 3-hydroxy-acyl-CoA de 99.3 2.8E-12 6E-17 135.6 10.2 126 92-242 6-147 (507)
56 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.3 5.6E-12 1.2E-16 133.1 10.1 126 92-242 4-145 (503)
57 PRK08293 3-hydroxybutyryl-CoA 99.3 2.2E-11 4.8E-16 119.7 10.0 124 93-240 3-143 (287)
58 PRK07530 3-hydroxybutyryl-CoA 99.2 1.4E-10 3E-15 114.1 10.2 125 93-242 4-144 (292)
59 PRK05808 3-hydroxybutyryl-CoA 99.1 1.4E-10 3E-15 113.7 9.7 123 93-240 3-141 (282)
60 PRK06035 3-hydroxyacyl-CoA deh 99.1 1.8E-10 3.9E-15 113.4 10.2 125 93-242 3-146 (291)
61 PRK09260 3-hydroxybutyryl-CoA 99.1 2.5E-10 5.3E-15 112.3 9.5 124 94-241 2-141 (288)
62 PLN02545 3-hydroxybutyryl-CoA 99.1 3.4E-10 7.3E-15 111.6 10.2 126 93-243 4-145 (295)
63 PRK08269 3-hydroxybutyryl-CoA 98.9 1.4E-09 3.1E-14 108.5 7.6 114 105-241 1-139 (314)
64 COG1004 Ugd Predicted UDP-gluc 98.9 7.2E-09 1.6E-13 104.7 12.5 114 94-216 1-127 (414)
65 PRK06130 3-hydroxybutyryl-CoA 98.9 4.9E-09 1.1E-13 104.0 10.0 124 93-240 4-138 (311)
66 PRK07531 bifunctional 3-hydrox 98.9 5.9E-09 1.3E-13 110.2 11.0 123 93-239 4-138 (495)
67 PRK06129 3-hydroxyacyl-CoA deh 98.8 1.1E-08 2.4E-13 101.5 9.7 125 93-241 2-142 (308)
68 PF03721 UDPG_MGDP_dh_N: UDP-g 98.7 2.3E-08 5E-13 92.5 7.0 127 94-231 1-142 (185)
69 KOG1683 Hydroxyacyl-CoA dehydr 98.6 7.7E-08 1.7E-12 96.1 6.4 111 105-239 1-127 (380)
70 PLN02353 probable UDP-glucose 98.5 3.6E-07 7.8E-12 96.0 10.5 121 93-215 1-133 (473)
71 TIGR01915 npdG NADPH-dependent 98.5 2.1E-06 4.5E-11 81.2 13.9 128 94-243 1-145 (219)
72 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 3.6E-07 7.7E-12 82.1 7.2 97 95-210 1-103 (157)
73 COG0240 GpsA Glycerol-3-phosph 98.4 5.4E-06 1.2E-10 82.7 13.2 117 93-234 1-128 (329)
74 TIGR03026 NDP-sugDHase nucleot 98.3 9.4E-06 2E-10 83.9 13.2 122 94-226 1-137 (411)
75 PRK15057 UDP-glucose 6-dehydro 98.3 7.3E-06 1.6E-10 84.3 11.6 110 94-214 1-122 (388)
76 PRK00094 gpsA NAD(P)H-dependen 98.2 6.3E-06 1.4E-10 81.8 10.2 103 93-214 1-109 (325)
77 COG2085 Predicted dinucleotide 98.1 6.4E-05 1.4E-09 70.6 13.7 121 93-243 1-136 (211)
78 PF03446 NAD_binding_2: NAD bi 98.1 1.7E-05 3.7E-10 71.6 9.2 94 93-214 1-97 (163)
79 PRK08229 2-dehydropantoate 2-r 98.1 2.7E-05 5.8E-10 78.1 11.4 118 93-237 2-127 (341)
80 KOG2305 3-hydroxyacyl-CoA dehy 98.0 7.8E-06 1.7E-10 77.2 5.7 103 94-215 4-123 (313)
81 PRK12439 NAD(P)H-dependent gly 98.0 7.3E-05 1.6E-09 75.5 12.8 121 91-235 5-135 (341)
82 PRK06522 2-dehydropantoate 2-r 98.0 7.4E-05 1.6E-09 73.3 12.3 121 94-241 1-125 (304)
83 PRK12921 2-dehydropantoate 2-r 97.9 8.5E-05 1.8E-09 73.1 11.9 122 94-242 1-128 (305)
84 PRK11199 tyrA bifunctional cho 97.9 0.00014 3.1E-09 74.4 13.7 101 92-239 97-197 (374)
85 PTZ00345 glycerol-3-phosphate 97.9 6.1E-05 1.3E-09 76.9 10.5 118 93-227 11-149 (365)
86 PRK06249 2-dehydropantoate 2-r 97.9 7.2E-05 1.6E-09 74.5 10.8 124 92-242 4-132 (313)
87 PLN02427 UDP-apiose/xylose syn 97.9 7.3E-05 1.6E-09 76.2 11.1 120 87-210 8-135 (386)
88 PRK14619 NAD(P)H-dependent gly 97.9 5.5E-05 1.2E-09 75.2 9.8 78 93-211 4-83 (308)
89 TIGR03376 glycerol3P_DH glycer 97.9 6.4E-05 1.4E-09 76.1 10.1 116 95-227 1-136 (342)
90 PRK15182 Vi polysaccharide bio 97.9 0.00018 3.9E-09 74.9 13.6 109 93-214 6-125 (425)
91 PF01073 3Beta_HSD: 3-beta hyd 97.9 7.8E-05 1.7E-09 73.3 10.3 115 98-214 2-118 (280)
92 PRK14618 NAD(P)H-dependent gly 97.9 6.2E-05 1.3E-09 75.3 9.6 100 93-214 4-108 (328)
93 PLN03209 translocon at the inn 97.9 0.00028 6.1E-09 75.6 15.0 115 92-208 79-206 (576)
94 PF03807 F420_oxidored: NADP o 97.8 4.2E-05 9.1E-10 62.3 6.5 94 95-212 1-96 (96)
95 PRK11064 wecC UDP-N-acetyl-D-m 97.8 0.00012 2.6E-09 76.0 11.0 108 93-215 3-125 (415)
96 PRK14620 NAD(P)H-dependent gly 97.8 0.00016 3.6E-09 72.2 10.8 120 94-236 1-131 (326)
97 PRK07417 arogenate dehydrogena 97.7 0.00016 3.5E-09 70.9 9.9 85 94-206 1-87 (279)
98 PRK08655 prephenate dehydrogen 97.7 0.00035 7.6E-09 73.0 12.7 90 94-211 1-93 (437)
99 PLN02688 pyrroline-5-carboxyla 97.7 0.00033 7.1E-09 67.8 11.3 95 94-214 1-99 (266)
100 TIGR02354 thiF_fam2 thiamine b 97.7 0.00031 6.8E-09 65.8 10.6 98 93-208 21-142 (200)
101 COG2084 MmsB 3-hydroxyisobutyr 97.7 0.00037 8E-09 68.7 11.4 94 94-214 1-98 (286)
102 PRK12480 D-lactate dehydrogena 97.7 0.00031 6.6E-09 70.8 11.0 89 92-210 145-234 (330)
103 PRK11880 pyrroline-5-carboxyla 97.7 0.0005 1.1E-08 66.6 12.2 96 93-214 2-98 (267)
104 PLN02166 dTDP-glucose 4,6-dehy 97.7 0.00036 7.9E-09 72.9 11.9 112 91-210 118-233 (436)
105 PLN00198 anthocyanidin reducta 97.6 0.00055 1.2E-08 68.2 11.8 110 90-201 6-121 (338)
106 PLN02662 cinnamyl-alcohol dehy 97.6 0.00051 1.1E-08 67.6 11.4 106 93-200 4-116 (322)
107 TIGR00872 gnd_rel 6-phosphoglu 97.6 0.00026 5.7E-09 70.1 9.2 95 94-213 1-96 (298)
108 PRK06928 pyrroline-5-carboxyla 97.6 0.0007 1.5E-08 66.4 12.0 119 93-242 1-123 (277)
109 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.00028 6E-09 71.8 9.2 129 93-232 9-151 (436)
110 TIGR03466 HpnA hopanoid-associ 97.6 0.00056 1.2E-08 67.1 11.2 104 94-201 1-104 (328)
111 CHL00194 ycf39 Ycf39; Provisio 97.6 0.00047 1E-08 68.4 10.4 103 94-203 1-103 (317)
112 COG1748 LYS9 Saccharopine dehy 97.6 0.00082 1.8E-08 68.9 12.2 76 93-170 1-77 (389)
113 PRK15181 Vi polysaccharide bio 97.5 0.00057 1.2E-08 68.8 10.9 108 92-201 14-132 (348)
114 TIGR03589 PseB UDP-N-acetylglu 97.5 0.00068 1.5E-08 67.6 11.1 114 93-206 4-121 (324)
115 PF02719 Polysacc_synt_2: Poly 97.5 0.00058 1.3E-08 67.5 10.3 118 96-214 1-136 (293)
116 PRK11559 garR tartronate semia 97.5 0.00039 8.6E-09 68.4 9.2 65 93-169 2-66 (296)
117 PRK06545 prephenate dehydrogen 97.5 0.0011 2.4E-08 67.5 12.6 92 94-209 1-94 (359)
118 TIGR01505 tartro_sem_red 2-hyd 97.5 0.0003 6.6E-09 69.1 8.2 63 95-169 1-63 (291)
119 PRK07680 late competence prote 97.5 0.00053 1.1E-08 66.9 9.8 97 94-214 1-100 (273)
120 PTZ00142 6-phosphogluconate de 97.5 0.00044 9.5E-09 72.9 9.5 100 93-213 1-104 (470)
121 PLN02214 cinnamoyl-CoA reducta 97.5 0.001 2.3E-08 66.8 11.9 110 92-206 9-123 (342)
122 PRK07502 cyclohexadienyl dehyd 97.5 0.0016 3.4E-08 64.6 12.9 93 93-210 6-100 (307)
123 PLN02650 dihydroflavonol-4-red 97.4 0.0012 2.5E-08 66.4 11.6 107 93-201 5-118 (351)
124 PRK07679 pyrroline-5-carboxyla 97.4 0.0018 4E-08 63.3 12.4 98 93-214 3-103 (279)
125 KOG1502 Flavonol reductase/cin 97.4 0.0016 3.5E-08 65.2 12.0 117 92-211 5-128 (327)
126 PF02558 ApbA: Ketopantoate re 97.4 0.00063 1.4E-08 59.9 8.3 121 96-242 1-127 (151)
127 PLN02256 arogenate dehydrogena 97.4 0.0016 3.5E-08 64.9 12.0 114 91-239 34-151 (304)
128 PF13460 NAD_binding_10: NADH( 97.4 0.00085 1.8E-08 60.5 9.2 91 96-203 1-91 (183)
129 PRK11908 NAD-dependent epimera 97.4 0.00096 2.1E-08 66.8 10.2 112 93-210 1-117 (347)
130 PRK15461 NADH-dependent gamma- 97.4 0.00068 1.5E-08 67.1 9.0 65 93-169 1-65 (296)
131 PRK12491 pyrroline-5-carboxyla 97.4 0.0014 3.1E-08 64.2 11.1 96 94-214 3-101 (272)
132 PLN02206 UDP-glucuronate decar 97.4 0.0014 3E-08 68.7 11.5 112 91-210 117-232 (442)
133 PRK10675 UDP-galactose-4-epime 97.3 0.0018 4E-08 64.2 11.5 106 94-201 1-115 (338)
134 COG0287 TyrA Prephenate dehydr 97.3 0.0034 7.4E-08 61.8 12.4 90 93-206 3-94 (279)
135 PRK05708 2-dehydropantoate 2-r 97.3 0.0029 6.2E-08 63.0 11.8 117 93-238 2-125 (305)
136 PF10727 Rossmann-like: Rossma 97.3 0.00099 2.1E-08 58.1 7.5 102 92-219 9-115 (127)
137 PRK09599 6-phosphogluconate de 97.3 0.002 4.3E-08 63.9 10.6 91 94-211 1-95 (301)
138 COG1893 ApbA Ketopantoate redu 97.2 0.002 4.2E-08 64.4 10.3 121 94-242 1-127 (307)
139 COG0451 WcaG Nucleoside-diphos 97.2 0.0023 5E-08 62.3 10.6 101 94-199 1-105 (314)
140 PRK07634 pyrroline-5-carboxyla 97.2 0.0053 1.1E-07 58.5 12.9 98 93-214 4-103 (245)
141 PLN02989 cinnamyl-alcohol dehy 97.2 0.0038 8.2E-08 61.7 12.1 107 93-201 5-119 (325)
142 PLN02583 cinnamoyl-CoA reducta 97.2 0.0036 7.7E-08 61.6 11.6 107 93-201 6-118 (297)
143 PLN02695 GDP-D-mannose-3',5'-e 97.2 0.0026 5.6E-08 64.8 10.8 113 90-206 18-133 (370)
144 PRK12490 6-phosphogluconate de 97.2 0.0016 3.4E-08 64.6 8.9 91 94-211 1-95 (299)
145 TIGR01777 yfcH conserved hypot 97.2 0.0024 5.3E-08 61.5 10.0 98 96-202 1-102 (292)
146 PLN02986 cinnamyl-alcohol dehy 97.2 0.0043 9.3E-08 61.3 11.8 106 93-200 5-117 (322)
147 PLN02896 cinnamyl-alcohol dehy 97.2 0.0045 9.8E-08 62.2 12.1 106 93-200 10-127 (353)
148 TIGR02622 CDP_4_6_dhtase CDP-g 97.2 0.0035 7.7E-08 62.9 11.3 116 93-210 4-126 (349)
149 PRK08125 bifunctional UDP-gluc 97.2 0.0023 5.1E-08 70.1 10.7 107 91-201 313-424 (660)
150 PLN02572 UDP-sulfoquinovose sy 97.1 0.0029 6.2E-08 66.2 10.7 176 91-269 45-262 (442)
151 PTZ00431 pyrroline carboxylate 97.1 0.0042 9.1E-08 60.3 11.1 89 94-214 4-94 (260)
152 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.0031 6.8E-08 57.7 9.5 33 95-129 1-33 (174)
153 PLN02778 3,5-epimerase/4-reduc 97.1 0.0076 1.6E-07 59.5 12.7 92 91-202 7-103 (298)
154 TIGR01181 dTDP_gluc_dehyt dTDP 97.1 0.0027 5.9E-08 61.7 9.3 116 95-210 1-124 (317)
155 PRK12549 shikimate 5-dehydroge 97.0 0.0025 5.4E-08 62.9 8.6 75 93-172 127-205 (284)
156 COG1086 Predicted nucleoside-d 97.0 0.011 2.3E-07 63.0 13.7 121 93-214 250-384 (588)
157 PRK08507 prephenate dehydrogen 97.0 0.0075 1.6E-07 58.9 11.9 66 94-169 1-66 (275)
158 PF01118 Semialdhyde_dh: Semia 97.0 0.0015 3.2E-08 56.0 6.0 97 95-214 1-99 (121)
159 PLN02657 3,8-divinyl protochlo 97.0 0.0056 1.2E-07 63.0 11.4 110 89-203 56-175 (390)
160 PLN02712 arogenate dehydrogena 97.0 0.015 3.2E-07 64.0 15.3 91 91-210 50-143 (667)
161 TIGR01472 gmd GDP-mannose 4,6- 97.0 0.0057 1.2E-07 61.2 11.0 106 94-201 1-120 (343)
162 PRK15469 ghrA bifunctional gly 97.0 0.0062 1.4E-07 60.9 11.0 92 92-210 135-226 (312)
163 PF01488 Shikimate_DH: Shikima 97.0 0.0023 4.9E-08 56.0 6.9 74 93-173 12-87 (135)
164 COG1087 GalE UDP-glucose 4-epi 96.9 0.009 1.9E-07 59.1 11.5 154 94-258 1-164 (329)
165 PRK14806 bifunctional cyclohex 96.9 0.012 2.5E-07 65.4 13.8 93 93-210 3-97 (735)
166 PLN02350 phosphogluconate dehy 96.9 0.0028 6E-08 67.2 8.5 101 92-212 5-109 (493)
167 PRK10084 dTDP-glucose 4,6 dehy 96.9 0.0047 1E-07 61.8 9.6 106 94-200 1-114 (352)
168 PRK05479 ketol-acid reductoiso 96.9 0.0041 8.9E-08 62.7 9.1 67 91-169 15-81 (330)
169 PRK08818 prephenate dehydrogen 96.9 0.0057 1.2E-07 62.6 10.2 80 93-206 4-84 (370)
170 PRK08267 short chain dehydroge 96.9 0.0057 1.2E-07 58.3 9.4 35 93-129 1-35 (260)
171 PRK06194 hypothetical protein; 96.9 0.012 2.7E-07 56.8 11.9 79 93-173 6-95 (287)
172 PRK15059 tartronate semialdehy 96.9 0.0037 8.1E-08 61.8 8.2 63 94-169 1-63 (292)
173 KOG2666 UDP-glucose/GDP-mannos 96.9 0.0011 2.4E-08 65.6 4.3 79 93-175 1-92 (481)
174 PRK08644 thiamine biosynthesis 96.8 0.0048 1E-07 58.4 8.5 35 93-129 28-62 (212)
175 PLN02653 GDP-mannose 4,6-dehyd 96.8 0.0063 1.4E-07 60.7 9.5 107 93-201 6-125 (340)
176 TIGR00873 gnd 6-phosphoglucona 96.8 0.0037 8E-08 65.9 8.2 99 95-213 1-101 (467)
177 PLN02712 arogenate dehydrogena 96.8 0.014 3E-07 64.3 12.8 94 89-211 365-461 (667)
178 COG2910 Putative NADH-flavin r 96.8 0.0065 1.4E-07 56.1 8.4 107 94-213 1-107 (211)
179 PRK13243 glyoxylate reductase; 96.8 0.0054 1.2E-07 61.9 8.8 64 92-169 149-212 (333)
180 TIGR01214 rmlD dTDP-4-dehydror 96.8 0.0076 1.7E-07 58.2 9.6 88 95-201 1-92 (287)
181 PLN02240 UDP-glucose 4-epimera 96.8 0.012 2.6E-07 58.7 11.2 111 93-205 5-127 (352)
182 PRK07806 short chain dehydroge 96.8 0.0073 1.6E-07 56.9 9.1 115 94-210 7-134 (248)
183 PRK09987 dTDP-4-dehydrorhamnos 96.7 0.0077 1.7E-07 59.3 9.3 92 94-201 1-96 (299)
184 PRK08605 D-lactate dehydrogena 96.7 0.0034 7.5E-08 63.3 6.9 63 92-169 145-208 (332)
185 PF01113 DapB_N: Dihydrodipico 96.7 0.012 2.6E-07 50.7 9.4 72 94-168 1-74 (124)
186 PLN02928 oxidoreductase family 96.7 0.0085 1.8E-07 60.9 9.7 103 92-210 158-262 (347)
187 COG0569 TrkA K+ transport syst 96.7 0.0088 1.9E-07 57.0 9.2 33 94-129 1-33 (225)
188 PRK10217 dTDP-glucose 4,6-dehy 96.7 0.0099 2.2E-07 59.5 9.8 107 93-200 1-115 (355)
189 PLN00141 Tic62-NAD(P)-related 96.7 0.013 2.8E-07 55.9 10.1 110 92-206 16-128 (251)
190 PLN00016 RNA-binding protein; 96.7 0.011 2.3E-07 60.3 10.1 37 91-129 50-90 (378)
191 COG0345 ProC Pyrroline-5-carbo 96.6 0.017 3.6E-07 56.6 10.7 97 93-214 1-99 (266)
192 COG0300 DltE Short-chain dehyd 96.6 0.017 3.7E-07 56.5 10.7 117 92-210 5-142 (265)
193 PRK13394 3-hydroxybutyrate deh 96.6 0.01 2.2E-07 56.3 9.1 116 93-210 7-143 (262)
194 PRK06436 glycerate dehydrogena 96.6 0.014 3.1E-07 58.2 10.3 93 92-214 121-215 (303)
195 PF00899 ThiF: ThiF family; I 96.6 0.008 1.7E-07 52.3 7.3 34 94-129 3-36 (135)
196 PLN02686 cinnamoyl-CoA reducta 96.6 0.014 3E-07 59.4 10.1 108 91-200 51-169 (367)
197 TIGR02853 spore_dpaA dipicolin 96.5 0.011 2.4E-07 58.5 8.9 94 93-214 151-245 (287)
198 TIGR01692 HIBADH 3-hydroxyisob 96.5 0.014 2.9E-07 57.5 9.5 60 98-169 1-60 (288)
199 PRK07574 formate dehydrogenase 96.5 0.0093 2E-07 61.4 8.6 66 92-169 191-256 (385)
200 cd01065 NAD_bind_Shikimate_DH 96.5 0.009 2E-07 52.6 7.4 73 93-173 19-93 (155)
201 TIGR02356 adenyl_thiF thiazole 96.5 0.017 3.7E-07 54.1 9.6 34 94-129 22-55 (202)
202 PRK12367 short chain dehydroge 96.5 0.034 7.3E-07 53.4 11.9 100 94-196 15-117 (245)
203 PRK05865 hypothetical protein; 96.5 0.015 3.2E-07 65.5 10.6 104 94-212 1-104 (854)
204 PRK07424 bifunctional sterol d 96.5 0.032 6.9E-07 57.9 12.3 105 92-199 177-290 (406)
205 PRK06476 pyrroline-5-carboxyla 96.5 0.019 4.1E-07 55.5 10.1 68 94-169 1-69 (258)
206 TIGR01724 hmd_rel H2-forming N 96.5 0.033 7.1E-07 55.8 11.8 85 105-214 31-119 (341)
207 cd05213 NAD_bind_Glutamyl_tRNA 96.5 0.017 3.6E-07 57.7 9.8 98 92-214 177-277 (311)
208 PRK07326 short chain dehydroge 96.5 0.015 3.3E-07 54.3 9.1 34 94-129 7-40 (237)
209 PRK06182 short chain dehydroge 96.4 0.022 4.7E-07 54.9 10.2 113 93-210 3-132 (273)
210 PF03949 Malic_M: Malic enzyme 96.4 0.0075 1.6E-07 58.6 6.9 106 93-214 25-145 (255)
211 PRK08340 glucose-1-dehydrogena 96.4 0.028 6.1E-07 53.6 10.8 77 94-172 1-87 (259)
212 PRK00048 dihydrodipicolinate r 96.4 0.058 1.3E-06 52.4 13.1 68 93-169 1-68 (257)
213 PRK12828 short chain dehydroge 96.4 0.022 4.7E-07 53.0 9.7 35 93-129 7-41 (239)
214 PF01370 Epimerase: NAD depend 96.4 0.0059 1.3E-07 56.8 5.9 103 96-202 1-108 (236)
215 PRK12429 3-hydroxybutyrate deh 96.4 0.015 3.3E-07 54.8 8.8 34 94-129 5-38 (258)
216 PF02826 2-Hacid_dh_C: D-isome 96.4 0.0047 1E-07 56.5 5.0 66 91-169 34-99 (178)
217 PRK10538 malonic semialdehyde 96.4 0.03 6.5E-07 53.1 10.7 34 94-129 1-34 (248)
218 cd01483 E1_enzyme_family Super 96.4 0.023 5.1E-07 49.7 9.2 33 95-129 1-33 (143)
219 PRK07231 fabG 3-ketoacyl-(acyl 96.4 0.052 1.1E-06 51.0 12.2 35 93-129 5-39 (251)
220 cd00757 ThiF_MoeB_HesA_family 96.4 0.017 3.6E-07 55.1 8.8 34 94-129 22-55 (228)
221 PF03435 Saccharop_dh: Sacchar 96.4 0.0057 1.2E-07 62.5 6.0 75 96-171 1-77 (386)
222 PRK07102 short chain dehydroge 96.4 0.031 6.8E-07 52.6 10.5 35 93-129 1-35 (243)
223 PRK11150 rfaD ADP-L-glycero-D- 96.4 0.024 5.2E-07 55.6 10.1 101 96-201 2-108 (308)
224 TIGR01179 galE UDP-glucose-4-e 96.3 0.023 4.9E-07 55.4 9.8 110 95-206 1-117 (328)
225 PRK08306 dipicolinate synthase 96.3 0.017 3.8E-07 57.3 9.0 66 93-169 152-218 (296)
226 PLN02260 probable rhamnose bio 96.3 0.028 6.1E-07 61.7 11.4 118 93-210 6-131 (668)
227 PRK07201 short chain dehydroge 96.3 0.037 8E-07 60.2 12.2 109 94-206 1-121 (657)
228 TIGR00465 ilvC ketol-acid redu 96.3 0.021 4.5E-07 57.3 9.4 65 93-169 3-67 (314)
229 PRK12829 short chain dehydroge 96.3 0.044 9.6E-07 51.9 11.3 35 93-129 11-45 (264)
230 PLN02253 xanthoxin dehydrogena 96.3 0.033 7.1E-07 53.7 10.4 35 93-129 18-52 (280)
231 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.012 2.6E-07 54.3 7.0 77 93-172 28-108 (194)
232 PRK08643 acetoin reductase; Va 96.3 0.048 1E-06 51.7 11.3 34 94-129 3-36 (256)
233 cd05311 NAD_bind_2_malic_enz N 96.3 0.0099 2.2E-07 56.7 6.6 97 93-214 25-132 (226)
234 PLN03139 formate dehydrogenase 96.3 0.015 3.3E-07 59.9 8.3 94 92-210 198-291 (386)
235 PRK13304 L-aspartate dehydroge 96.3 0.026 5.7E-07 55.0 9.6 89 93-206 1-90 (265)
236 PRK05717 oxidoreductase; Valid 96.2 0.018 3.9E-07 54.8 8.3 116 92-210 9-143 (255)
237 PRK07024 short chain dehydroge 96.2 0.033 7.1E-07 53.1 10.1 35 93-129 2-36 (257)
238 KOG1430 C-3 sterol dehydrogena 96.2 0.023 5.1E-07 57.8 9.4 107 93-201 4-117 (361)
239 PRK12320 hypothetical protein; 96.2 0.027 5.9E-07 62.2 10.5 101 94-210 1-101 (699)
240 COG1712 Predicted dinucleotide 96.2 0.028 6.1E-07 53.5 9.1 96 94-214 1-97 (255)
241 PRK07523 gluconate 5-dehydroge 96.2 0.03 6.5E-07 53.2 9.5 117 93-211 10-146 (255)
242 PRK12475 thiamine/molybdopteri 96.2 0.025 5.4E-07 57.3 9.3 35 93-129 24-58 (338)
243 TIGR02355 moeB molybdopterin s 96.2 0.025 5.5E-07 54.5 8.9 34 94-129 25-58 (240)
244 PRK06180 short chain dehydroge 96.2 0.052 1.1E-06 52.4 11.3 35 93-129 4-38 (277)
245 PRK05884 short chain dehydroge 96.1 0.037 8.1E-07 51.9 9.8 34 94-129 1-34 (223)
246 PRK06196 oxidoreductase; Provi 96.1 0.051 1.1E-06 53.7 11.2 113 93-210 26-155 (315)
247 TIGR01832 kduD 2-deoxy-D-gluco 96.1 0.1 2.3E-06 49.0 12.8 35 93-129 5-39 (248)
248 PRK07069 short chain dehydroge 96.1 0.042 9.1E-07 51.7 10.1 113 95-210 1-137 (251)
249 PRK05690 molybdopterin biosynt 96.1 0.033 7.2E-07 53.8 9.5 35 93-129 32-66 (245)
250 cd05312 NAD_bind_1_malic_enz N 96.1 0.024 5.2E-07 55.8 8.5 105 93-214 25-144 (279)
251 PRK06101 short chain dehydroge 96.1 0.051 1.1E-06 51.3 10.4 114 94-210 2-127 (240)
252 PRK06482 short chain dehydroge 96.1 0.046 1E-06 52.6 10.3 102 94-197 3-118 (276)
253 PRK07688 thiamine/molybdopteri 96.1 0.029 6.3E-07 56.8 9.1 35 93-129 24-58 (339)
254 PRK07774 short chain dehydroge 96.1 0.027 5.9E-07 53.0 8.4 35 93-129 6-40 (250)
255 PRK12937 short chain dehydroge 96.1 0.039 8.4E-07 51.7 9.4 116 93-210 5-139 (245)
256 PRK12823 benD 1,6-dihydroxycyc 96.0 0.073 1.6E-06 50.6 11.4 35 93-129 8-42 (260)
257 PRK12557 H(2)-dependent methyl 96.0 0.035 7.6E-07 56.3 9.6 82 105-210 31-116 (342)
258 PRK12384 sorbitol-6-phosphate 96.0 0.11 2.3E-06 49.4 12.5 116 94-211 3-141 (259)
259 TIGR03206 benzo_BadH 2-hydroxy 96.0 0.071 1.5E-06 50.1 11.1 35 93-129 3-37 (250)
260 PRK08265 short chain dehydroge 96.0 0.046 9.9E-07 52.4 9.9 34 94-129 7-40 (261)
261 PRK03659 glutathione-regulated 96.0 0.034 7.3E-07 60.6 10.0 141 93-262 400-542 (601)
262 PRK14194 bifunctional 5,10-met 96.0 0.017 3.8E-07 57.4 7.0 56 92-172 158-213 (301)
263 PRK07890 short chain dehydroge 96.0 0.032 7E-07 52.8 8.7 35 93-129 5-39 (258)
264 TIGR02197 heptose_epim ADP-L-g 96.0 0.037 8.1E-07 54.0 9.4 102 96-201 1-106 (314)
265 KOG1201 Hydroxysteroid 17-beta 96.0 0.043 9.4E-07 54.2 9.6 112 92-206 37-168 (300)
266 PRK07856 short chain dehydroge 96.0 0.039 8.5E-07 52.3 9.3 35 93-129 6-40 (252)
267 PRK06128 oxidoreductase; Provi 96.0 0.057 1.2E-06 53.0 10.7 116 93-210 55-191 (300)
268 TIGR01327 PGDH D-3-phosphoglyc 96.0 0.027 5.9E-07 60.3 9.0 65 92-169 137-201 (525)
269 cd00762 NAD_bind_malic_enz NAD 96.0 0.0063 1.4E-07 59.0 3.7 126 93-239 25-167 (254)
270 PRK12939 short chain dehydroge 96.0 0.051 1.1E-06 51.0 9.9 35 93-129 7-41 (250)
271 TIGR02632 RhaD_aldol-ADH rhamn 96.0 0.073 1.6E-06 58.8 12.5 69 58-129 380-448 (676)
272 PRK07067 sorbitol dehydrogenas 96.0 0.044 9.6E-07 52.0 9.5 114 94-210 7-139 (257)
273 COG0111 SerA Phosphoglycerate 96.0 0.024 5.2E-07 57.1 8.0 64 93-169 142-205 (324)
274 KOG1429 dTDP-glucose 4-6-dehyd 96.0 0.019 4.1E-07 56.5 6.8 79 88-170 22-100 (350)
275 PRK08263 short chain dehydroge 95.9 0.037 7.9E-07 53.4 8.9 34 94-129 4-37 (275)
276 PRK06181 short chain dehydroge 95.9 0.062 1.4E-06 51.1 10.4 34 94-129 2-35 (263)
277 PRK05993 short chain dehydroge 95.9 0.045 9.8E-07 53.0 9.5 34 94-129 5-38 (277)
278 cd00401 AdoHcyase S-adenosyl-L 95.9 0.05 1.1E-06 56.6 10.2 89 92-212 201-291 (413)
279 PRK05650 short chain dehydroge 95.9 0.078 1.7E-06 50.9 11.0 34 94-129 1-34 (270)
280 PRK06841 short chain dehydroge 95.9 0.039 8.5E-07 52.2 8.8 35 93-129 15-49 (255)
281 PRK13302 putative L-aspartate 95.9 0.076 1.6E-06 52.1 10.9 68 93-170 6-76 (271)
282 PRK07814 short chain dehydroge 95.9 0.054 1.2E-06 51.9 9.8 35 93-129 10-44 (263)
283 PRK14982 acyl-ACP reductase; P 95.9 0.049 1.1E-06 55.2 9.8 71 93-173 155-227 (340)
284 cd01079 NAD_bind_m-THF_DH NAD 95.9 0.025 5.5E-07 52.8 7.0 77 91-173 60-138 (197)
285 PF05368 NmrA: NmrA-like famil 95.9 0.019 4.1E-07 54.0 6.3 94 96-201 1-94 (233)
286 PRK06924 short chain dehydroge 95.8 0.044 9.4E-07 51.7 8.8 35 93-129 1-35 (251)
287 PRK07074 short chain dehydroge 95.8 0.064 1.4E-06 50.9 10.0 34 94-129 3-36 (257)
288 PRK08219 short chain dehydroge 95.8 0.061 1.3E-06 49.7 9.6 76 93-173 3-83 (227)
289 PRK05875 short chain dehydroge 95.8 0.051 1.1E-06 52.2 9.3 35 93-129 7-41 (276)
290 PRK07454 short chain dehydroge 95.8 0.065 1.4E-06 50.3 9.9 35 93-129 6-40 (241)
291 PRK08339 short chain dehydroge 95.8 0.1 2.3E-06 50.1 11.4 114 94-210 9-143 (263)
292 PRK05876 short chain dehydroge 95.8 0.072 1.6E-06 51.7 10.3 34 94-129 7-40 (275)
293 PRK06179 short chain dehydroge 95.8 0.065 1.4E-06 51.3 9.9 34 94-129 5-38 (270)
294 PRK06057 short chain dehydroge 95.8 0.078 1.7E-06 50.4 10.3 35 93-129 7-41 (255)
295 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.026 5.7E-07 51.5 6.6 55 92-172 43-98 (168)
296 PRK06940 short chain dehydroge 95.8 0.063 1.4E-06 52.0 9.7 102 94-200 2-114 (275)
297 PRK06172 short chain dehydroge 95.7 0.063 1.4E-06 50.8 9.5 35 93-129 7-41 (253)
298 PRK13581 D-3-phosphoglycerate 95.7 0.037 8E-07 59.3 8.7 64 92-169 139-202 (526)
299 TIGR02371 ala_DH_arch alanine 95.7 0.031 6.7E-07 56.2 7.7 71 93-169 128-200 (325)
300 TIGR03325 BphB_TodD cis-2,3-di 95.7 0.04 8.6E-07 52.7 8.1 35 93-129 5-39 (262)
301 PLN02968 Probable N-acetyl-gam 95.7 0.068 1.5E-06 55.0 10.3 76 92-170 37-113 (381)
302 PRK07904 short chain dehydroge 95.7 0.095 2.1E-06 50.1 10.7 112 93-206 8-142 (253)
303 PRK06197 short chain dehydroge 95.7 0.052 1.1E-06 53.3 9.0 36 92-129 15-50 (306)
304 PRK05653 fabG 3-ketoacyl-(acyl 95.7 0.063 1.4E-06 50.0 9.2 34 94-129 6-39 (246)
305 PRK05866 short chain dehydroge 95.7 0.089 1.9E-06 51.7 10.6 35 93-129 40-74 (293)
306 PRK08223 hypothetical protein; 95.7 0.059 1.3E-06 53.4 9.2 34 94-129 28-61 (287)
307 PRK09135 pteridine reductase; 95.7 0.14 3E-06 47.9 11.5 105 94-200 7-130 (249)
308 TIGR01745 asd_gamma aspartate- 95.7 0.06 1.3E-06 55.0 9.5 71 94-170 1-73 (366)
309 PRK06598 aspartate-semialdehyd 95.7 0.062 1.4E-06 55.0 9.6 72 93-170 1-74 (369)
310 cd01485 E1-1_like Ubiquitin ac 95.7 0.076 1.6E-06 49.6 9.5 34 94-129 20-53 (198)
311 cd01488 Uba3_RUB Ubiquitin act 95.7 1.1 2.3E-05 44.7 18.0 33 95-129 1-33 (291)
312 PRK05476 S-adenosyl-L-homocyst 95.7 0.064 1.4E-06 56.0 9.8 91 92-212 211-301 (425)
313 PRK05867 short chain dehydroge 95.6 0.094 2E-06 49.7 10.3 35 93-129 9-43 (253)
314 PRK07478 short chain dehydroge 95.6 0.14 3E-06 48.5 11.5 34 94-129 7-40 (254)
315 PRK05565 fabG 3-ketoacyl-(acyl 95.6 0.11 2.5E-06 48.4 10.7 35 93-129 5-40 (247)
316 PRK06124 gluconate 5-dehydroge 95.6 0.05 1.1E-06 51.6 8.4 35 93-129 11-45 (256)
317 PRK08251 short chain dehydroge 95.6 0.18 3.8E-06 47.5 12.0 34 94-129 3-36 (248)
318 PRK08993 2-deoxy-D-gluconate 3 95.6 0.11 2.4E-06 49.4 10.6 116 94-211 11-145 (253)
319 PRK15116 sulfur acceptor prote 95.6 0.074 1.6E-06 52.2 9.5 34 94-129 31-64 (268)
320 PRK12826 3-ketoacyl-(acyl-carr 95.6 0.092 2E-06 49.2 10.0 35 93-129 6-40 (251)
321 PRK09291 short chain dehydroge 95.6 0.15 3.4E-06 48.1 11.6 78 94-173 3-85 (257)
322 PLN02780 ketoreductase/ oxidor 95.6 0.13 2.9E-06 51.3 11.6 35 93-129 53-87 (320)
323 PRK06523 short chain dehydroge 95.6 0.056 1.2E-06 51.3 8.5 35 93-129 9-43 (260)
324 PRK08291 ectoine utilization p 95.6 0.044 9.6E-07 55.2 8.1 72 93-170 132-206 (330)
325 PRK07666 fabG 3-ketoacyl-(acyl 95.6 0.096 2.1E-06 49.1 9.9 34 94-129 8-41 (239)
326 PRK07060 short chain dehydroge 95.6 0.093 2E-06 49.1 9.8 35 93-129 9-43 (245)
327 PRK08085 gluconate 5-dehydroge 95.6 0.072 1.6E-06 50.5 9.1 35 93-129 9-43 (254)
328 PRK07677 short chain dehydroge 95.6 0.12 2.6E-06 48.9 10.7 34 94-129 2-35 (252)
329 PRK07063 short chain dehydroge 95.5 0.075 1.6E-06 50.5 9.3 35 93-129 7-41 (260)
330 PF03059 NAS: Nicotianamine sy 95.5 0.041 8.8E-07 54.2 7.5 105 92-209 120-229 (276)
331 PRK06914 short chain dehydroge 95.5 0.15 3.3E-06 49.0 11.5 34 94-129 4-37 (280)
332 PRK03562 glutathione-regulated 95.5 0.077 1.7E-06 58.0 10.4 137 93-261 400-541 (621)
333 PRK07877 hypothetical protein; 95.5 0.046 9.9E-07 60.6 8.6 35 93-129 107-141 (722)
334 PRK06500 short chain dehydroge 95.5 0.11 2.3E-06 48.8 10.1 104 94-200 7-125 (249)
335 PRK06138 short chain dehydroge 95.5 0.099 2.2E-06 49.2 9.9 35 93-129 5-39 (252)
336 PRK12742 oxidoreductase; Provi 95.5 0.12 2.6E-06 48.2 10.4 34 93-128 6-39 (237)
337 PRK09186 flagellin modificatio 95.5 0.13 2.7E-06 48.7 10.6 35 93-129 4-38 (256)
338 PRK05597 molybdopterin biosynt 95.5 0.075 1.6E-06 54.2 9.6 34 94-129 29-62 (355)
339 PRK12746 short chain dehydroge 95.5 0.12 2.6E-06 48.8 10.5 31 94-126 7-37 (254)
340 PRK07825 short chain dehydroge 95.5 0.072 1.6E-06 51.1 9.1 34 94-129 6-39 (273)
341 PRK07340 ornithine cyclodeamin 95.5 0.042 9.2E-07 54.7 7.6 70 93-170 125-197 (304)
342 PRK11790 D-3-phosphoglycerate 95.5 0.065 1.4E-06 55.7 9.2 116 70-214 125-245 (409)
343 PRK05600 thiamine biosynthesis 95.5 0.061 1.3E-06 55.1 9.0 35 93-129 41-75 (370)
344 PRK12827 short chain dehydroge 95.5 0.12 2.7E-06 48.2 10.5 34 93-128 6-39 (249)
345 PF02882 THF_DHG_CYH_C: Tetrah 95.5 0.057 1.2E-06 48.9 7.7 77 60-172 14-90 (160)
346 PRK07453 protochlorophyllide o 95.5 0.09 2E-06 52.1 10.0 35 93-129 6-40 (322)
347 PLN02858 fructose-bisphosphate 95.5 0.053 1.1E-06 64.3 9.5 69 91-171 322-390 (1378)
348 PRK12481 2-deoxy-D-gluconate 3 95.5 0.098 2.1E-06 49.8 9.8 115 94-210 9-142 (251)
349 PRK05693 short chain dehydroge 95.5 0.076 1.6E-06 51.1 9.1 35 93-129 1-35 (274)
350 PRK07576 short chain dehydroge 95.5 0.093 2E-06 50.4 9.7 35 93-129 9-43 (264)
351 cd01492 Aos1_SUMO Ubiquitin ac 95.5 0.11 2.3E-06 48.6 9.7 34 94-129 22-55 (197)
352 PRK08945 putative oxoacyl-(acy 95.5 0.21 4.5E-06 47.1 11.9 37 91-129 10-46 (247)
353 TIGR00936 ahcY adenosylhomocys 95.4 0.089 1.9E-06 54.6 9.9 91 92-212 194-284 (406)
354 PRK06444 prephenate dehydrogen 95.4 0.049 1.1E-06 51.1 7.3 28 94-123 1-28 (197)
355 PRK06141 ornithine cyclodeamin 95.4 0.055 1.2E-06 54.1 8.2 71 93-170 125-198 (314)
356 PRK06153 hypothetical protein; 95.4 0.072 1.6E-06 54.7 9.0 35 93-129 176-210 (393)
357 PTZ00075 Adenosylhomocysteinas 95.4 0.059 1.3E-06 56.8 8.6 91 91-212 252-343 (476)
358 PRK07832 short chain dehydroge 95.4 0.31 6.7E-06 46.8 13.2 34 94-129 1-34 (272)
359 COG0136 Asd Aspartate-semialde 95.4 0.081 1.8E-06 53.3 9.2 73 93-170 1-75 (334)
360 PRK08324 short chain dehydroge 95.4 0.12 2.6E-06 57.0 11.5 36 92-129 421-456 (681)
361 PRK08589 short chain dehydroge 95.4 0.11 2.4E-06 50.0 10.0 78 93-172 6-93 (272)
362 PRK09496 trkA potassium transp 95.4 0.064 1.4E-06 55.7 8.8 71 94-169 1-73 (453)
363 PRK08213 gluconate 5-dehydroge 95.4 0.2 4.3E-06 47.6 11.6 117 93-211 12-149 (259)
364 PRK06198 short chain dehydroge 95.4 0.15 3.2E-06 48.3 10.7 35 93-129 6-41 (260)
365 PRK08762 molybdopterin biosynt 95.4 0.086 1.9E-06 54.0 9.6 35 93-129 135-169 (376)
366 COG4221 Short-chain alcohol de 95.4 0.17 3.8E-06 48.7 10.9 113 95-210 8-139 (246)
367 cd00755 YgdL_like Family of ac 95.4 0.093 2E-06 50.3 9.1 34 94-129 12-45 (231)
368 PRK06398 aldose dehydrogenase; 95.3 0.083 1.8E-06 50.5 8.8 35 93-129 6-40 (258)
369 PRK08328 hypothetical protein; 95.3 0.093 2E-06 50.2 9.1 34 94-129 28-61 (231)
370 KOG0409 Predicted dehydrogenas 95.3 0.051 1.1E-06 53.8 7.3 69 92-172 34-102 (327)
371 PRK07878 molybdopterin biosynt 95.3 0.084 1.8E-06 54.5 9.4 34 94-129 43-76 (392)
372 TIGR01963 PHB_DH 3-hydroxybuty 95.3 0.15 3.2E-06 48.0 10.3 34 94-129 2-35 (255)
373 TIGR02415 23BDH acetoin reduct 95.3 0.083 1.8E-06 49.8 8.7 114 95-210 2-136 (254)
374 PRK08618 ornithine cyclodeamin 95.3 0.066 1.4E-06 53.8 8.4 72 93-170 127-201 (325)
375 PF07991 IlvN: Acetohydroxy ac 95.3 0.14 3E-06 46.6 9.5 64 93-168 4-67 (165)
376 TIGR01850 argC N-acetyl-gamma- 95.3 0.043 9.4E-07 55.7 7.1 74 94-170 1-77 (346)
377 PRK12936 3-ketoacyl-(acyl-carr 95.3 0.14 3E-06 47.9 10.0 35 93-129 6-40 (245)
378 PRK15438 erythronate-4-phospha 95.3 0.05 1.1E-06 55.9 7.5 61 92-169 115-175 (378)
379 PRK05786 fabG 3-ketoacyl-(acyl 95.3 0.12 2.6E-06 48.2 9.6 34 94-129 6-39 (238)
380 PRK00045 hemA glutamyl-tRNA re 95.3 0.088 1.9E-06 54.8 9.4 102 92-214 181-284 (423)
381 PRK08177 short chain dehydroge 95.3 0.087 1.9E-06 49.1 8.6 35 93-129 1-35 (225)
382 PRK09424 pntA NAD(P) transhydr 95.3 0.065 1.4E-06 57.1 8.5 104 91-212 163-287 (509)
383 PRK06139 short chain dehydroge 95.3 0.14 2.9E-06 51.6 10.4 78 93-172 7-95 (330)
384 PRK08628 short chain dehydroge 95.3 0.15 3.2E-06 48.4 10.2 34 94-129 8-41 (258)
385 PRK06701 short chain dehydroge 95.2 0.15 3.3E-06 49.9 10.5 117 93-211 46-182 (290)
386 PRK07109 short chain dehydroge 95.2 0.19 4.1E-06 50.5 11.3 78 93-172 8-96 (334)
387 COG0002 ArgC Acetylglutamate s 95.2 0.047 1E-06 55.0 6.8 73 93-168 2-77 (349)
388 PRK14179 bifunctional 5,10-met 95.2 0.046 9.9E-07 54.0 6.7 57 92-173 157-213 (284)
389 PRK14106 murD UDP-N-acetylmura 95.2 0.097 2.1E-06 54.5 9.5 124 93-227 5-133 (450)
390 PRK07411 hypothetical protein; 95.2 0.099 2.2E-06 54.0 9.5 35 93-129 38-72 (390)
391 PRK06463 fabG 3-ketoacyl-(acyl 95.2 0.14 3.1E-06 48.5 10.0 35 93-129 7-41 (255)
392 PRK05872 short chain dehydroge 95.2 0.095 2.1E-06 51.4 9.0 35 93-129 9-43 (296)
393 PRK09072 short chain dehydroge 95.2 0.14 3E-06 48.9 9.9 35 93-129 5-39 (263)
394 PRK06113 7-alpha-hydroxysteroi 95.2 0.17 3.7E-06 48.0 10.4 35 93-129 11-45 (255)
395 PRK09242 tropinone reductase; 95.2 0.38 8.3E-06 45.6 12.8 35 93-129 9-43 (257)
396 PRK12825 fabG 3-ketoacyl-(acyl 95.2 0.1 2.3E-06 48.5 8.7 35 93-129 6-40 (249)
397 PRK13303 L-aspartate dehydroge 95.1 0.16 3.5E-06 49.6 10.3 89 93-206 1-90 (265)
398 cd01491 Ube1_repeat1 Ubiquitin 95.1 0.11 2.4E-06 51.4 9.2 72 94-168 20-112 (286)
399 PRK08278 short chain dehydroge 95.1 0.2 4.4E-06 48.3 10.9 35 93-129 6-40 (273)
400 PLN02306 hydroxypyruvate reduc 95.1 0.072 1.6E-06 54.9 8.1 74 92-169 164-244 (386)
401 PRK05855 short chain dehydroge 95.1 0.11 2.4E-06 55.1 9.7 117 92-210 314-451 (582)
402 TIGR00518 alaDH alanine dehydr 95.1 0.048 1E-06 55.9 6.7 75 92-172 166-241 (370)
403 KOG1205 Predicted dehydrogenas 95.1 0.22 4.7E-06 49.3 10.9 118 93-214 12-153 (282)
404 TIGR01746 Thioester-redct thio 95.1 0.12 2.7E-06 51.0 9.5 111 95-206 1-132 (367)
405 TIGR01809 Shik-DH-AROM shikima 95.1 0.072 1.6E-06 52.5 7.7 74 93-171 125-200 (282)
406 PRK08226 short chain dehydroge 95.1 0.14 3.1E-06 48.7 9.6 34 94-129 7-40 (263)
407 PLN02858 fructose-bisphosphate 95.1 0.072 1.6E-06 63.2 8.9 65 93-169 4-68 (1378)
408 PRK14175 bifunctional 5,10-met 95.1 0.061 1.3E-06 53.2 7.1 56 92-172 157-212 (286)
409 PRK01438 murD UDP-N-acetylmura 95.1 0.15 3.2E-06 53.7 10.5 125 93-227 16-147 (480)
410 PF02423 OCD_Mu_crystall: Orni 95.1 0.064 1.4E-06 53.7 7.3 70 93-169 128-200 (313)
411 PRK13403 ketol-acid reductoiso 95.1 0.11 2.4E-06 52.3 8.8 66 91-169 14-79 (335)
412 COG0289 DapB Dihydrodipicolina 95.0 0.29 6.3E-06 47.7 11.4 75 93-168 2-76 (266)
413 PRK07062 short chain dehydroge 95.0 0.43 9.3E-06 45.4 12.8 34 94-129 9-42 (265)
414 PRK15409 bifunctional glyoxyla 95.0 0.065 1.4E-06 53.9 7.3 64 92-169 144-208 (323)
415 PRK00257 erythronate-4-phospha 95.0 0.038 8.3E-07 56.8 5.7 60 93-169 116-175 (381)
416 PRK06935 2-deoxy-D-gluconate 3 95.0 0.15 3.2E-06 48.5 9.4 35 93-129 15-49 (258)
417 TIGR02992 ectoine_eutC ectoine 95.0 0.079 1.7E-06 53.3 7.8 72 93-170 129-203 (326)
418 PRK09134 short chain dehydroge 95.0 0.14 3E-06 48.7 9.2 35 92-128 8-42 (258)
419 PRK06949 short chain dehydroge 95.0 0.21 4.6E-06 47.1 10.4 36 92-129 8-43 (258)
420 PRK06728 aspartate-semialdehyd 95.0 0.14 3.1E-06 52.1 9.5 71 93-170 5-77 (347)
421 PRK06953 short chain dehydroge 95.0 0.25 5.4E-06 45.9 10.6 103 93-199 1-116 (222)
422 PRK07577 short chain dehydroge 94.9 0.19 4.2E-06 46.7 9.8 34 94-129 4-37 (234)
423 PRK08277 D-mannonate oxidoredu 94.9 0.29 6.4E-06 47.0 11.4 35 93-129 10-44 (278)
424 PRK08217 fabG 3-ketoacyl-(acyl 94.9 0.15 3.2E-06 47.8 9.1 34 94-129 6-39 (253)
425 PRK08264 short chain dehydroge 94.9 0.17 3.7E-06 47.2 9.5 75 94-172 7-84 (238)
426 PRK12935 acetoacetyl-CoA reduc 94.9 0.23 4.9E-06 46.7 10.3 32 94-127 7-38 (247)
427 PRK08410 2-hydroxyacid dehydro 94.9 0.058 1.2E-06 54.0 6.5 61 92-169 144-204 (311)
428 PRK06114 short chain dehydroge 94.9 0.17 3.7E-06 48.1 9.5 34 94-129 9-42 (254)
429 PRK14192 bifunctional 5,10-met 94.9 0.071 1.5E-06 52.7 7.1 56 92-172 158-213 (283)
430 PRK07035 short chain dehydroge 94.9 0.15 3.2E-06 48.2 9.0 34 94-129 9-42 (252)
431 PRK07578 short chain dehydroge 94.9 0.2 4.3E-06 45.8 9.6 104 94-210 1-111 (199)
432 TIGR01035 hemA glutamyl-tRNA r 94.9 0.055 1.2E-06 56.3 6.5 99 93-214 180-281 (417)
433 PRK12747 short chain dehydroge 94.9 0.34 7.3E-06 45.8 11.4 32 94-127 5-36 (252)
434 PRK08642 fabG 3-ketoacyl-(acyl 94.8 0.62 1.3E-05 43.7 13.1 33 94-128 6-38 (253)
435 smart00859 Semialdhyde_dh Semi 94.8 0.25 5.4E-06 42.0 9.4 71 95-169 1-73 (122)
436 TIGR00036 dapB dihydrodipicoli 94.8 0.98 2.1E-05 44.1 14.7 76 93-169 1-76 (266)
437 PRK05854 short chain dehydroge 94.8 0.27 5.9E-06 48.7 11.1 35 93-129 14-48 (313)
438 PRK12743 oxidoreductase; Provi 94.8 0.66 1.4E-05 44.1 13.3 33 94-128 3-35 (256)
439 PRK06718 precorrin-2 dehydroge 94.8 0.16 3.5E-06 47.6 8.9 70 93-170 10-79 (202)
440 PRK06407 ornithine cyclodeamin 94.8 0.094 2E-06 52.3 7.7 72 93-169 117-190 (301)
441 PLN02494 adenosylhomocysteinas 94.8 0.15 3.3E-06 53.7 9.5 89 93-212 254-343 (477)
442 PRK13940 glutamyl-tRNA reducta 94.8 0.068 1.5E-06 55.6 6.9 74 93-173 181-254 (414)
443 COG1052 LdhA Lactate dehydroge 94.8 0.086 1.9E-06 53.1 7.4 64 92-169 145-208 (324)
444 PF02254 TrkA_N: TrkA-N domain 94.8 0.13 2.9E-06 42.9 7.5 96 96-211 1-97 (116)
445 PRK00421 murC UDP-N-acetylmura 94.8 0.17 3.8E-06 53.0 10.0 128 92-232 6-136 (461)
446 PRK14188 bifunctional 5,10-met 94.7 0.078 1.7E-06 52.7 6.8 56 92-172 157-212 (296)
447 PRK06823 ornithine cyclodeamin 94.7 0.11 2.3E-06 52.2 7.8 72 92-169 127-200 (315)
448 PRK06079 enoyl-(acyl carrier p 94.7 0.13 2.9E-06 49.0 8.3 34 94-129 8-43 (252)
449 PRK07023 short chain dehydroge 94.7 0.097 2.1E-06 49.3 7.2 35 93-129 1-35 (243)
450 PRK02705 murD UDP-N-acetylmura 94.7 0.13 2.9E-06 53.7 8.9 125 95-228 2-135 (459)
451 PRK06487 glycerate dehydrogena 94.7 0.07 1.5E-06 53.5 6.5 59 92-169 147-205 (317)
452 PRK06200 2,3-dihydroxy-2,3-dih 94.7 0.21 4.6E-06 47.6 9.6 35 93-129 6-40 (263)
453 PRK13301 putative L-aspartate 94.6 0.22 4.7E-06 48.8 9.5 89 93-208 2-93 (267)
454 PRK08936 glucose-1-dehydrogena 94.6 0.36 7.9E-06 45.9 11.1 35 93-129 7-41 (261)
455 TIGR03649 ergot_EASG ergot alk 94.6 0.23 4.9E-06 48.1 9.8 69 95-170 1-76 (285)
456 PRK06171 sorbitol-6-phosphate 94.6 0.12 2.5E-06 49.4 7.6 34 94-129 10-43 (266)
457 PRK08703 short chain dehydroge 94.6 0.79 1.7E-05 42.9 13.2 34 94-129 7-40 (239)
458 PRK07831 short chain dehydroge 94.6 0.78 1.7E-05 43.6 13.3 35 93-129 17-52 (262)
459 PRK12824 acetoacetyl-CoA reduc 94.6 0.23 5E-06 46.4 9.4 34 94-129 3-36 (245)
460 PLN02725 GDP-4-keto-6-deoxyman 94.6 0.13 2.8E-06 50.0 7.9 86 98-201 2-92 (306)
461 PRK05557 fabG 3-ketoacyl-(acyl 94.6 0.23 5E-06 46.2 9.4 35 93-129 5-39 (248)
462 PRK07985 oxidoreductase; Provi 94.6 0.46 1E-05 46.5 11.9 115 94-210 50-185 (294)
463 PRK14173 bifunctional 5,10-met 94.6 0.1 2.2E-06 51.7 7.1 57 92-173 154-210 (287)
464 PRK08261 fabG 3-ketoacyl-(acyl 94.6 0.27 5.9E-06 51.1 10.8 117 92-210 209-342 (450)
465 PRK12745 3-ketoacyl-(acyl-carr 94.6 0.37 8.1E-06 45.4 10.9 34 94-129 3-36 (256)
466 TIGR01082 murC UDP-N-acetylmur 94.6 0.22 4.9E-06 52.0 10.2 130 95-237 1-133 (448)
467 PRK06483 dihydromonapterin red 94.5 0.36 7.8E-06 45.1 10.6 34 94-129 3-36 (236)
468 PF04321 RmlD_sub_bind: RmlD s 94.5 0.041 8.9E-07 54.1 4.3 98 94-210 1-100 (286)
469 PRK14189 bifunctional 5,10-met 94.5 0.11 2.4E-06 51.4 7.3 56 92-172 157-212 (285)
470 PRK06932 glycerate dehydrogena 94.5 0.088 1.9E-06 52.7 6.7 60 92-169 146-205 (314)
471 cd05212 NAD_bind_m-THF_DH_Cycl 94.5 0.13 2.7E-06 45.6 6.9 57 91-172 26-82 (140)
472 PRK14851 hypothetical protein; 94.5 0.15 3.2E-06 56.4 8.9 34 94-129 44-77 (679)
473 cd01484 E1-2_like Ubiquitin ac 94.4 0.23 5.1E-06 47.7 9.2 33 95-129 1-33 (234)
474 TIGR01830 3oxo_ACP_reduc 3-oxo 94.4 0.14 3E-06 47.6 7.5 113 96-210 1-134 (239)
475 PRK14852 hypothetical protein; 94.4 0.15 3.3E-06 57.9 9.0 35 93-129 332-366 (989)
476 PRK14027 quinate/shikimate deh 94.4 0.15 3.3E-06 50.3 8.0 75 93-170 127-203 (283)
477 PLN02260 probable rhamnose bio 94.4 0.34 7.3E-06 53.2 11.5 90 91-202 378-474 (668)
478 PRK08220 2,3-dihydroxybenzoate 94.4 0.21 4.6E-06 47.0 8.7 35 93-129 8-42 (252)
479 PRK00436 argC N-acetyl-gamma-g 94.4 0.11 2.4E-06 52.7 7.0 35 93-127 2-36 (343)
480 cd01489 Uba2_SUMO Ubiquitin ac 94.3 0.2 4.3E-06 50.3 8.7 33 95-129 1-33 (312)
481 PRK14190 bifunctional 5,10-met 94.3 0.12 2.6E-06 51.2 7.0 57 92-173 157-213 (284)
482 PRK06719 precorrin-2 dehydroge 94.3 0.41 8.8E-06 43.1 10.0 66 93-169 13-78 (157)
483 TIGR01470 cysG_Nterm siroheme 94.3 0.3 6.6E-06 45.9 9.5 70 93-170 9-78 (205)
484 PRK07589 ornithine cyclodeamin 94.3 0.13 2.8E-06 52.3 7.5 71 93-169 129-201 (346)
485 PRK08040 putative semialdehyde 94.3 0.22 4.8E-06 50.5 9.1 70 93-170 4-75 (336)
486 TIGR03736 PRTRC_ThiF PRTRC sys 94.3 0.27 5.8E-06 47.6 9.3 37 92-129 10-55 (244)
487 PRK06947 glucose-1-dehydrogena 94.3 0.26 5.6E-06 46.3 9.2 33 93-127 2-34 (248)
488 PLN02383 aspartate semialdehyd 94.3 0.26 5.6E-06 50.1 9.6 71 93-170 7-78 (344)
489 PLN00203 glutamyl-tRNA reducta 94.3 0.1 2.2E-06 55.9 6.9 73 93-172 266-340 (519)
490 PRK07097 gluconate 5-dehydroge 94.3 0.28 6E-06 46.9 9.4 35 93-129 10-44 (265)
491 PRK14177 bifunctional 5,10-met 94.3 0.13 2.8E-06 50.9 7.1 57 92-173 158-214 (284)
492 PRK14874 aspartate-semialdehyd 94.3 0.1 2.2E-06 52.6 6.6 71 93-170 1-72 (334)
493 PRK14176 bifunctional 5,10-met 94.2 0.14 3E-06 50.7 7.2 57 92-173 163-219 (287)
494 COG1064 AdhP Zn-dependent alco 94.2 0.62 1.3E-05 47.2 12.0 115 92-239 166-285 (339)
495 PRK12744 short chain dehydroge 94.2 0.27 5.9E-06 46.6 9.1 34 93-128 8-41 (257)
496 COG2423 Predicted ornithine cy 94.2 0.14 3E-06 51.8 7.2 71 93-168 130-202 (330)
497 PRK13529 malate dehydrogenase; 94.2 0.28 6E-06 52.7 9.8 106 93-214 295-421 (563)
498 COG4007 Predicted dehydrogenas 94.2 2.2 4.7E-05 41.8 14.9 156 106-309 33-193 (340)
499 PLN03096 glyceraldehyde-3-phos 94.2 0.21 4.6E-06 51.6 8.7 29 94-123 61-90 (395)
500 PRK07792 fabG 3-ketoacyl-(acyl 94.2 0.24 5.2E-06 48.9 8.9 35 93-129 12-46 (306)
No 1
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=4.8e-70 Score=515.83 Aligned_cols=318 Identities=70% Similarity=1.055 Sum_probs=307.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+..||+|+||+|.+|+.++++|.++++++++.|||+....|.+.||+|..+...+..++|..++++++++||+|||.|
T Consensus 25 ~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA 104 (345)
T KOG1494|consen 25 SQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA 104 (345)
T ss_pred ccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence 35578999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHH
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTF 249 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~ 249 (412)
|+||||||+|+||+..|+.|+++++..+.++||+|.+.++|||+|+++||+.+++++.+.|+|+|++|+|+||..|.++|
T Consensus 105 GVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~tF 184 (345)
T KOG1494|consen 105 GVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTF 184 (345)
T ss_pred CCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC-CCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHH
Q 015172 250 VAQKKNLKL-IDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFV 328 (412)
Q Consensus 250 la~~l~v~~-~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii 328 (412)
+++.++++| ++++++|||+|.|.|++|++|+..|..++++++++.|+.|+|++|.||+++|.|+||+++|||||.++|+
T Consensus 185 v~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~fa 264 (345)
T KOG1494|consen 185 VAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKFA 264 (345)
T ss_pred HHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHHH
Confidence 999999999 5599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172 329 ESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ 408 (412)
Q Consensus 329 ~ail~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~ 408 (412)
.+.+++++|++.+..|+||.+.+.+.+||++|++||++||+++.. +.+|+++|++.|+.+.++|++.|++|++|+++.
T Consensus 265 ~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~--l~~lsd~E~~~l~~~~~eLk~sI~KGv~F~~~~ 342 (345)
T KOG1494|consen 265 DSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLG--LGKLSDYEEKALEAAKPELKKSIEKGVTFVKST 342 (345)
T ss_pred HHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecC--CCccCHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 999999999999999999999877889999999999999999999 689999999999999999999999999998865
Q ss_pred h
Q 015172 409 A 409 (412)
Q Consensus 409 ~ 409 (412)
-
T Consensus 343 ~ 343 (345)
T KOG1494|consen 343 S 343 (345)
T ss_pred c
Confidence 4
No 2
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-67 Score=521.79 Aligned_cols=309 Identities=68% Similarity=1.037 Sum_probs=279.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||+||||+|.||+++|+.++.+++++||+|+|++.++|+++||.|+.....+....+++|+.++++|||+||+++|.||
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 69999998899999999999999999999999999778999999999743333322233344458999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHH
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQK 253 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~ 253 (412)
+|||+|+|++..|.++++++++.|.+++|++|+|++|||+|+|++|+++++++.+++|++||||+|.|||+|+++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHh
Q 015172 254 KNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333 (412)
Q Consensus 254 l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~ 333 (412)
+|+++++|+++|+|||+|+++||+||++.|..+++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++|++
T Consensus 161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~ 240 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240 (310)
T ss_pred hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999995589999999999877776667899999999999999998656689999999999999999998
Q ss_pred ccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172 334 ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQ-GLTEYEQKALEALKPELKASIEKGVAFA 405 (412)
Q Consensus 334 ~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~-~Lse~E~~~L~~sa~~L~~~i~~~~~~~ 405 (412)
|+.+++.+++|+++.++-.+++|||+||+||++|++++++ + +|+++|+++|++|++.|++.+++|+.|+
T Consensus 241 ~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~---l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~ 310 (310)
T cd01337 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLG---LGKLNDYEKKLLEAALPELKKNIEKGVDFV 310 (310)
T ss_pred hcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeC---CCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 8766677899997765423567999999999999999999 6 6999999999999999999999998873
No 3
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=4.1e-67 Score=518.75 Aligned_cols=309 Identities=63% Similarity=0.962 Sum_probs=279.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRK 174 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k 174 (412)
||+||||+|.||+++|+.|+.+++++||+|+|++++.|+++||.|......+..+++.+|+.++++|||+||+++|.||+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999988999999999999999999999999998889999999976432232212222333489999999999999999
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHHHc
Q 015172 175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKK 254 (412)
Q Consensus 175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l 254 (412)
||++|+|++..|.+++++++++|.+++|++++|++|||+|+++||+++++++.+|+||+||||+|.|||+||+++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhc
Q 015172 255 NLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334 (412)
Q Consensus 255 ~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~ 334 (412)
++++++|+++||||||+++++|+||++.....++++++++|.++++++|++|+++|.|+|+|+||+|+++++++++|+.+
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~ 240 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence 99999999999999986799999999875433666679999999999999999986556899999999999999999986
Q ss_pred cCCCCCeEEeeeecCCC-CCCCceeeeEEEcCCceEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015172 335 LDGDGDVYECVFVESNL-TELPFFASRVKLGRNGVESLISSDLQ-GLTEYEQKALEALKPELKASIEKGVAFAQ 406 (412)
Q Consensus 335 ~~g~~~v~~~s~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~-~Lse~E~~~L~~sa~~L~~~i~~~~~~~~ 406 (412)
+.+++.++||++++++| .+++|||+||+||++||+++++ + +|+++|+++|++|++.|++.+++|++|++
T Consensus 241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~ 311 (312)
T TIGR01772 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLG---IGKLSSFEEKMLNGALPELKKNIKKGEEFVA 311 (312)
T ss_pred hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55567899999887665 4678999999999999999999 6 89999999999999999999999999986
No 4
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=7.6e-66 Score=505.09 Aligned_cols=297 Identities=40% Similarity=0.604 Sum_probs=268.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee-eecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL-DFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~-~i~~t~d~~~al~~aDiVIiaag 170 (412)
+||+|||| |.||+++|+.|+.+++.+|++|+|+++ ++|.++||.|+.+..... .+.++.||+ +++|||+||++||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~-~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYE-DLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChh-hhcCCCEEEEeCC
Confidence 59999999 999999999998888888999999996 799999999997653222 333435686 7999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF 249 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~ 249 (412)
.||||||+|+||+..|++|+++++++|.+++||++++|+|||+| ++++++++.+|+|++||||+ |.||++||+++
T Consensus 79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~ 154 (313)
T COG0039 79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRTF 154 (313)
T ss_pred CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 67888999999999999999 89999999999
Q ss_pred HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC----ChHHHHHHHHHHhhccchhhhcccCCCchhhhHH
Q 015172 250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF----TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321 (412)
Q Consensus 250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~----~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A 321 (412)
||+++++++++|+++|+|+|| +++||+||+++ |..++ ++++++++.+++|++|++|+++| |.| |+||+|
T Consensus 155 lae~~~v~~~~V~~~ViGeHG-dt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A 231 (313)
T COG0039 155 LAEKLGVSPKDVHAYVIGEHG-DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPA 231 (313)
T ss_pred HHHHhCCChhHceeeEeccCC-CceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHH
Confidence 999999999999999999885 79999999986 55443 33567899999999999999999 545 999999
Q ss_pred HHHHHHHHHHHhccCCCCCeEEee-eecCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172 322 YAAARFVESSLRALDGDGDVYECV-FVESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399 (412)
Q Consensus 322 ~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~ 399 (412)
.++++++++|++| +++++|++ |++++| .++.||++|+++|++|++++++ ++|+++|+++|++|+++|++.++
T Consensus 232 ~a~a~~~~ail~d---~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie---~~l~~~E~~~l~~s~~~lk~~i~ 305 (313)
T COG0039 232 AALARMVEAILRD---EKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILE---LLLSDDEQEKLDKSAEELKKNIE 305 (313)
T ss_pred HHHHHHHHHHHcC---CCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEec---CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 46899987 566666 6778999999999999999999 78999999999999999999999
Q ss_pred HHHHHH
Q 015172 400 KGVAFA 405 (412)
Q Consensus 400 ~~~~~~ 405 (412)
.+..++
T Consensus 306 ~~~~~~ 311 (313)
T COG0039 306 LVKELV 311 (313)
T ss_pred HHHHhh
Confidence 887764
No 5
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=2.2e-64 Score=501.12 Aligned_cols=305 Identities=76% Similarity=1.145 Sum_probs=281.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
..||+||||+|.||+.+++.|+++++++||+|+|+++++++++||.|+.....+..+++++|+.++++|||+||+++|.|
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~ 97 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP 97 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence 36999999889999999999999999999999999988899999999876555555556677777999999999999999
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHHH
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQ 252 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la~ 252 (412)
++||++|+|++..|.++++++++.+.+++|+++++++|||+|.+.|++++++++.+++||+||||++.||++||++++|+
T Consensus 98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~ 177 (323)
T PLN00106 98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAE 177 (323)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHH
Q 015172 253 KKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332 (412)
Q Consensus 253 ~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail 332 (412)
++|+++.+|+++|+|||||+++||+||++.|..+++++++++|.++++++|++|++.|.|+|+|+||+|.++++|+++|+
T Consensus 178 ~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ail 257 (323)
T PLN00106 178 KKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADACL 257 (323)
T ss_pred HhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999887667777799999999999999999864558999999999999999999
Q ss_pred hccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399 (412)
Q Consensus 333 ~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~ 399 (412)
.++++++.++|||++++++.+.+|||+||+||++|++++++ +++|+++|+++|++|++.|++.++
T Consensus 258 ~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~S~~~i~~~~~ 322 (323)
T PLN00106 258 RGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLG--LGPLSEYEQKGLEALKPELKASIE 322 (323)
T ss_pred hccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 98766778999998877664448999999999999999999 238999999999999999998775
No 6
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=8.1e-62 Score=482.44 Aligned_cols=313 Identities=60% Similarity=0.933 Sum_probs=275.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCc-HHhhcCCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al~~aDiVIiaa 169 (412)
-+++||+||||||.||+.+++.++..+++++|+|+|++.++++++||.|......+...+...+ |+ +++|||+||+++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~-~l~gaDvVVita 84 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEK-ALRGADLVLICA 84 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHH-HhCCCCEEEECC
Confidence 3577999999889999999999999999999999999668899999999765333332322134 54 899999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHH
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTF 249 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~ 249 (412)
|.|++|+++|.|++..|+++++++++.+.+++|+++++++|||+|.+++++.+.+++.+++||+||||++.|||+||+++
T Consensus 85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~ 164 (321)
T PTZ00325 85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF 164 (321)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999965555332335889999999999977999999999
Q ss_pred HHHHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHH
Q 015172 250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVE 329 (412)
Q Consensus 250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ 329 (412)
||+++|++|++|+++|+||||++++||+||++. ..++++++++|.++++++|++|++.|.|+|+|+||+|++++++++
T Consensus 165 la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ 242 (321)
T PTZ00325 165 VAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST 242 (321)
T ss_pred HHHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence 999999999999999999997338999999982 125666799999999999999999876668999999999999999
Q ss_pred HHHhccCCCCCeEEeeeecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015172 330 SSLRALDGDGDVYECVFVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQ 408 (412)
Q Consensus 330 ail~~~~g~~~v~~~s~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~~ 408 (412)
+|++++.+++.+++|++++++|. +++|||+||+||++|++++++ +++|+++|+++|++|++.|++.+++|+.|++|.
T Consensus 243 ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~~ 320 (321)
T PTZ00325 243 SVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLP--IGPLNAYEEELLEAAVPDLKKNIEKGLEFARKK 320 (321)
T ss_pred HHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998766788999998887763 567999999999999999998 468999999999999999999999999999863
No 7
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=3e-61 Score=477.96 Aligned_cols=310 Identities=60% Similarity=0.864 Sum_probs=274.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+||||+|.+|+.+++.+.. .++..+|+|+|+++ ..++++|+.|......+.. ...+|+.++++|+|+||+++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~-~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG-FSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE-eCCCCHHHHcCCCCEEEEcCCC
Confidence 7999999999999999998866 57778999999976 5677889988532222221 1145744589999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHH
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA 251 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la 251 (412)
+++++++|.|++..|+++++++++.|++++|+++++++|||+|+|++++.+.+++.+|+|++||||+|.|||+|+++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998888877777799999999999998899999999999
Q ss_pred HHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHH
Q 015172 252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331 (412)
Q Consensus 252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ai 331 (412)
+++++++++|+++|+||||++++||+||++ +-..++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++|
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai 238 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence 999999999999999999877999999999 4344677779999999999999999988666899999999999999999
Q ss_pred HhccCCCCCeEEeeeecCCCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015172 332 LRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQK 407 (412)
Q Consensus 332 l~~~~g~~~v~~~s~v~~~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~~~ 407 (412)
+++++++++++|+++++++-.+++|||+||+||++|++++++ +++|+++|+++|++|++.|++.+++|++|+++
T Consensus 239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~ 312 (312)
T PRK05086 239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLP--IGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312 (312)
T ss_pred HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998776788999887765423457999999999999999999 23999999999999999999999999999875
No 8
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-61 Score=477.72 Aligned_cols=286 Identities=24% Similarity=0.361 Sum_probs=256.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC---CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP---SQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~---~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
||+|||| |.||+++|+.++.+++++||+|+|+++ ++|+++||.|.... ..+. +. ++||+ +++|||+||++|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~-i~-~~~y~-~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTK-IR-AGDYD-DCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEE-EE-ECCHH-HhCCCCEEEECC
Confidence 7999998 999999999999999999999999987 78999999997532 1233 33 36786 799999999999
Q ss_pred CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHH
Q 015172 170 GVPRKPGMT--RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRA 246 (412)
Q Consensus 170 g~p~k~g~~--r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~ 246 (412)
|.||+|||+ |+|++..|++|++++++.+.+++|++++|++|||+| ++++++++.+|+||+||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999 67888999999999999999 89999999
Q ss_pred HHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC------ChHHHHHHHHHHhhccchhhhcccCCCch
Q 015172 247 NTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF------TDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316 (412)
Q Consensus 247 ~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~------~~~~~~~l~~~v~~~g~eii~~K~g~gst 316 (412)
+++||+++|+++++|+++|||||| ++++|+||+++ |..++ .+.++++|.++++++|++|+++| |+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHG-SHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCC-CceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence 999999999999999999999996 79999999986 32222 22357899999999999999988 899
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172 317 TLSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394 (412)
Q Consensus 317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L 394 (412)
+|++|+++++++++|+.| ++.++|++.. +++| +++.|||+||+||++|++++++ ++||++|+++|++|++.|
T Consensus 229 ~~~ia~a~~~ii~ail~d---~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~---l~L~~~E~~~l~~s~~~i 302 (307)
T cd05290 229 NAGIAKSASRLIKAILLD---ERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLE---IPLDEWELEKLHKSAKAI 302 (307)
T ss_pred hHHHHHHHHHHHHHHHhC---CCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecC---CCCCHHHHHHHHHHHHHH
Confidence 999999999999999988 4689998755 4445 3567999999999999999999 789999999999999999
Q ss_pred HHHH
Q 015172 395 KASI 398 (412)
Q Consensus 395 ~~~i 398 (412)
++.+
T Consensus 303 ~~~~ 306 (307)
T cd05290 303 RETI 306 (307)
T ss_pred HHHh
Confidence 9765
No 9
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=8.5e-61 Score=474.48 Aligned_cols=291 Identities=25% Similarity=0.359 Sum_probs=261.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||+|||| |.||+++|+.++.+++++||+|+|+++ ++|+++||.|+........+..++||+ +++|||+||+++|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG 80 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG 80 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence 469999998 999999999999999999999999987 789999999987322222455567997 6999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF 249 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~ 249 (412)
.|++|||+|+|++..|+++++++++.|++++|++++|++|||+| ++++++++.+|+|++||||+ |.||++|++++
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~ 156 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYL 156 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 67899999999999999999 99999999999
Q ss_pred HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC--------ChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172 250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF--------TDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317 (412)
Q Consensus 250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~--------~~~~~~~l~~~v~~~g~eii~~K~g~gst~ 317 (412)
+|+++++++++|+++|+|||| +++||+||++. |..++ +++++++|.++++++|++|+++| |+|+
T Consensus 157 la~~l~v~~~~v~~~v~GeHG-~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~ 232 (312)
T cd05293 157 IAERLGVAPSSVHGWIIGEHG-DSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GYTS 232 (312)
T ss_pred HHHHhCCChhhEEEEEeecCC-CCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CCch
Confidence 999999999999999999996 79999999986 32222 23458999999999999999988 8999
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172 318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394 (412)
Q Consensus 318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L 394 (412)
|++|+++++++++|+.+ ++.+++++.. ++.| +++.|||+||+||++|++++++ ++|+++|+++|++|++.|
T Consensus 233 ~~~a~a~~~ii~ail~d---~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~---l~L~~~E~~~l~~s~~~i 306 (312)
T cd05293 233 WAIGLSVADLVDAILRN---TGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIK---QPLTEEEQEKLQKSADTL 306 (312)
T ss_pred HHHHHHHHHHHHHHHcC---CCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEec---CCCCHHHHHHHHHHHHHH
Confidence 99999999999999988 4678898755 4433 4677999999999999999999 789999999999999999
Q ss_pred HHHHH
Q 015172 395 KASIE 399 (412)
Q Consensus 395 ~~~i~ 399 (412)
++.++
T Consensus 307 ~~~~~ 311 (312)
T cd05293 307 WEVQK 311 (312)
T ss_pred HHHhh
Confidence 98765
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=5.7e-61 Score=477.26 Aligned_cols=297 Identities=29% Similarity=0.422 Sum_probs=260.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCce-eeecCCCcHHhhcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQV-LDFTGPEELASALKG 161 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~ 161 (412)
.+.||+||||+|.||+++|+.|+.+++++ ||+|+|+++ ++|+++||.|+.++..- ..++ +++|+ +++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~~~~-~~~d 79 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TDPEE-AFKD 79 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cChHH-HhCC
Confidence 45899999988999999999999999999 999999954 68999999999743211 1233 46776 7999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEecc
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGVT 239 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGlt 239 (412)
||+||++||.|++|||+|+|++..|++++++++++|++++| ++++|++|||+| ++++++++.+ |+|++||||+|
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~t 155 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN----TNALIASKNAPDIPPKNFSAMT 155 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEee
Confidence 99999999999999999999999999999999999999997 999999999999 6788889999 99999999999
Q ss_pred ccchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCC-CChHH--HHHHHHHHhhccchhhhccc
Q 015172 240 TLDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVS-FTDEE--VGDLTVRIQNAGTEVVEAKA 311 (412)
Q Consensus 240 ~Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~--~~~l~~~v~~~g~eii~~K~ 311 (412)
.||++|||++||+++|++|++|+ .+|||||| ++++|+||+++ |..+ +++++ +++|.+++++++++|+++|
T Consensus 156 ~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (323)
T TIGR01759 156 RLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS-NTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR- 233 (323)
T ss_pred HHHHHHHHHHHHHHhCcChHHeEEeEEEecCC-CceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc-
Confidence 99999999999999999999996 56999997 79999999986 3344 34433 6899999999999999988
Q ss_pred CCCchhh-hHHHHHHHHHHHHHhccCCCCCeEEee-eecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172 312 GAGSATL-SMAYAAARFVESSLRALDGDGDVYECV-FVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386 (412)
Q Consensus 312 g~gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~ 386 (412)
|+|+| ++|+++++++++|++|.+ .++++||| |+++ +| ++++|||+||+||++|++++++ | ++|+++|+++
T Consensus 234 --G~t~~~~~a~a~~~iv~ail~~~~-~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~-~-l~L~~~E~~~ 308 (323)
T TIGR01759 234 --GASSAASAANAAIDHVRDWVTGTP-EGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVE-G-LPLDDFVRGK 308 (323)
T ss_pred --CCcchHHHHHHHHHHHHHHHcCCC-CCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcC-C-CCCCHHHHHH
Confidence 78999 577999999999999952 15799998 5666 54 4678999999999999999988 3 6899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 015172 387 LEALKPELKASIEKG 401 (412)
Q Consensus 387 L~~sa~~L~~~i~~~ 401 (412)
|++|++.|+++++++
T Consensus 309 l~~sa~~lk~~~~~~ 323 (323)
T TIGR01759 309 LDATEDELLEEKEEA 323 (323)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998763
No 11
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=4.5e-60 Score=475.00 Aligned_cols=291 Identities=25% Similarity=0.396 Sum_probs=261.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
+||+|||+ |.||+++|+.++.+++++||+|+|+++ ++|+++||.|+........+.+++||+ +++|||+||++||.
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitAG~ 115 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTAGA 115 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECCCC
Confidence 69999998 999999999999999999999999987 789999999986321113455556897 59999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHH
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFV 250 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~l 250 (412)
|++|||+|.|++..|++++++++++|+++||++++|++|||+| ++++++++.+|+|++||||+ |.||++|++++|
T Consensus 116 ~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvd----v~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~l 191 (350)
T PLN02602 116 RQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVD----VLTYVAWKLSGFPANRVIGSGTNLDSSRFRFLI 191 (350)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHHhCCCHHHEEeecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 67888889889999999999 699999999999
Q ss_pred HHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC--------CChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172 251 AQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS--------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318 (412)
Q Consensus 251 a~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~--------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~ 318 (412)
|+++|+++++|+++|+|||| +++||+||+++ |..+ +++++++++.++++++|++|+++| |+|+|
T Consensus 192 A~~l~v~~~~V~~~ViGeHG-ds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~~ 267 (350)
T PLN02602 192 ADHLDVNAQDVQAYIVGEHG-DSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTSW 267 (350)
T ss_pred HHHhCCCccceeeeEEecCC-CceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccHH
Confidence 99999999999999999996 79999999975 3221 344557899999999999999988 89999
Q ss_pred hHHHHHHHHHHHHHhccCCCCCeEEeeeecC-CCC---CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHH
Q 015172 319 SMAYAAARFVESSLRALDGDGDVYECVFVES-NLT---ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394 (412)
Q Consensus 319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i~---~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L 394 (412)
++|+++++++++|++| ++.++||+.... +|. +++|+|+||+||++|++++++ ++|+++|+++|++|++.|
T Consensus 268 gia~a~a~ii~ail~d---~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~---l~L~~~E~~~l~~sa~~l 341 (350)
T PLN02602 268 AIGYSVASLVRSLLRD---QRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVN---VHLTDEEAERLRKSAKTL 341 (350)
T ss_pred HHHHHHHHHHHHHHhc---CCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEec---CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999 468999986544 442 567999999999999999999 789999999999999999
Q ss_pred HHHHHH
Q 015172 395 KASIEK 400 (412)
Q Consensus 395 ~~~i~~ 400 (412)
++.++.
T Consensus 342 ~~~~~~ 347 (350)
T PLN02602 342 WEVQSQ 347 (350)
T ss_pred HHHHHH
Confidence 988765
No 12
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.4e-60 Score=446.95 Aligned_cols=291 Identities=23% Similarity=0.357 Sum_probs=266.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
....||.|+|+ |.||.++|+.++.+++.+|++|+|+++ ++|+++||+|.........+....||. +.+++|+||++
T Consensus 18 ~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~-~sa~S~lvIiT 95 (332)
T KOG1495|consen 18 FKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYS-VSANSKLVIIT 95 (332)
T ss_pred ccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCccc-ccCCCcEEEEe
Confidence 34679999998 999999999999999999999999998 799999999987544444556678997 79999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN 247 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~ 247 (412)
||..+++|++|+|++.+|+.|++.+++++.+|.||++++++|||+| |+||+.|+.+|+|++||||. |+|||+|||
T Consensus 96 AGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nRViGsGcnLDsaRFr 171 (332)
T KOG1495|consen 96 AGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNRVIGSGCNLDSARFR 171 (332)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccceeccCcCccHHHHH
Confidence 9999999999999999999999999999999999999999999999 88999999999999999999 999999999
Q ss_pred HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC--------CCChHHHHHHHHHHhhccchhhhcccCCCc
Q 015172 248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV--------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315 (412)
Q Consensus 248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~--------~~~~~~~~~l~~~v~~~g~eii~~K~g~gs 315 (412)
++++++||++|++++++|||||| ++.||+||... +.. ..+++.|+++.+++.+.+|||++.| ||
T Consensus 172 yLi~~~Lg~~pss~hgwIiGEHG-dSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---Gy 247 (332)
T KOG1495|consen 172 YLIGNRLGVHPSSCHGWIIGEHG-DSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---GY 247 (332)
T ss_pred HHHHHHhCCCcccceEEEeeccC-CccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---Cc
Confidence 99999999999999999999997 79999999874 221 1456679999999999999999999 99
Q ss_pred hhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecC--CCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172 316 ATLSMAYAAARFVESSLRALDGDGDVYECVF-VES--NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392 (412)
Q Consensus 316 t~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~--~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~ 392 (412)
|+|++|.++++++++|++|+ ++++|++. +.+ ++.+++|+|.||++|++|+..+++ .+|+++|+++|.+|++
T Consensus 248 TswaIglsva~l~~ail~n~---~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~---~~Lt~~E~akL~kSa~ 321 (332)
T KOG1495|consen 248 TSWAIGLSVADLAQAILRNL---RRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVK---QKLTDEEVAKLKKSAK 321 (332)
T ss_pred hHHHHHHHHHHHHHHHHhCc---CceeeeeeccccccCCCCceEEecceeecCCchhhhhc---ccCCHHHHHHHHHHHH
Confidence 99999999999999999995 68999984 443 367788999999999999999999 8999999999999999
Q ss_pred HHHHH
Q 015172 393 ELKAS 397 (412)
Q Consensus 393 ~L~~~ 397 (412)
.|.+.
T Consensus 322 tl~~~ 326 (332)
T KOG1495|consen 322 TLLEA 326 (332)
T ss_pred HHHHH
Confidence 99753
No 13
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=3.3e-60 Score=467.89 Aligned_cols=282 Identities=27% Similarity=0.447 Sum_probs=253.0
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCce-eeecCCCcHHhhcCCCcEEEEcCCCCCC
Q 015172 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQV-LDFTGPEELASALKGVNVVVIPAGVPRK 174 (412)
Q Consensus 98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~aDiVIiaag~p~k 174 (412)
|||+ |.||+++|+.++.+++++||+|+|+++ ++|+++||.|+...... ..++ .+||+ +++|||+||+++|.||+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~-~~~~~-~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR-SGDYS-DCKDADLVVITAGAPQK 77 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe-cCCHH-HHCCCCEEEECCCCCCC
Confidence 6898 999999999999999999999999987 79999999998744321 1344 46786 79999999999999999
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHHH
Q 015172 175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQK 253 (412)
Q Consensus 175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~~ 253 (412)
|||+|+|++..|++++++++++|++++|++++|++|||+| ++++++++.+++|++||||+ |.||++|+++++|++
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~ 153 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEK 153 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 67888999999999999999 889999999999999
Q ss_pred cCCCCCCeeeeEEcccCCcccccccccCC----CCCCC-------ChHHHHHHHHHHhhccchhhhcccCCCchhhhHHH
Q 015172 254 KNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF-------TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322 (412)
Q Consensus 254 l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~-------~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~ 322 (412)
+++++++|+++|+|||| ++++|+||+++ |..++ ++.++++|.++++++|++|+++| |+|+|++|+
T Consensus 154 l~v~~~~V~~~v~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a~ 229 (299)
T TIGR01771 154 LGVDPQSVHAYIIGEHG-DSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGM 229 (299)
T ss_pred hCcCcCeEEEEEEecCC-CceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHHH
Confidence 99999999999999996 79999999986 43333 13357899999999999999988 899999999
Q ss_pred HHHHHHHHHHhccCCCCCeEEee-eecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172 323 AAARFVESSLRALDGDGDVYECV-FVESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA 396 (412)
Q Consensus 323 a~~~ii~ail~~~~g~~~v~~~s-~v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~ 396 (412)
++++++++|+.| +++++||| +++++|. .++|||+||+||++|++++++ ++|+++|+++|++|++.||+
T Consensus 230 a~~~~i~ail~d---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---l~L~~~E~~~l~~s~~~ik~ 299 (299)
T TIGR01771 230 AVARIVEAILHD---ENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIE---LPLSDEEKEAFQKSAETLKK 299 (299)
T ss_pred HHHHHHHHHHcC---CCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEcc---CCCCHHHHHHHHHHHHHHhC
Confidence 999999999998 47899997 5555552 357999999999999999999 78999999999999999873
No 14
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-59 Score=466.80 Aligned_cols=298 Identities=24% Similarity=0.367 Sum_probs=261.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALK 160 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~ 160 (412)
.++||+||||+|.||+++|+.|+..++++ ||+|+|+++ ++|+++||.|+..+. .+ .++ +++|+ +++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~i~-~~~y~-~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGV-VIT-DDPNV-AFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCc-EEe-cChHH-HhC
Confidence 35799999988999999999999999999 999999954 689999999987432 22 344 46776 799
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV 238 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl 238 (412)
|||+||++||.|++|||+|.|++..|++++++++++|++++ |++++|++|||+| ++++++++.+ |+|++||||+
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~k~s~g~p~~rViG~ 155 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPAN----TNALIAMKNAPDLPAENFTAM 155 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHHHEEee
Confidence 99999999999999999999999999999999999999998 8999999999999 6677788888 9999999999
Q ss_pred cccchHHHHHHHHHHcCCCCCCeeeeE-EcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhcc
Q 015172 239 TTLDVVRANTFVAQKKNLKLIDVDVPV-VGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAK 310 (412)
Q Consensus 239 t~Lds~R~~~~la~~l~v~~~~V~~~V-iG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K 310 (412)
|.||++|||++||+++++++++|++++ ||||| +++||+||+++ |..++ ++++ +++|.++++++|++|+++|
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 234 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS-ATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR 234 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc-CceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence 999999999999999999999999965 89997 69999999986 33343 4444 5789999999999999988
Q ss_pred cCCCchhhhHHHH-HHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172 311 AGAGSATLSMAYA-AARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386 (412)
Q Consensus 311 ~g~gst~~s~A~a-~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~ 386 (412)
|+|+|++|.+ +++++++|+.+.+ +++++|||++.. +| ++++|||+||+|| +|+++++. | ++|+++|+++
T Consensus 235 ---G~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~-~-l~L~~~E~~~ 307 (326)
T PRK05442 235 ---GASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQ-G-LEIDDFSREK 307 (326)
T ss_pred ---CCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeC-C-CCCCHHHHHH
Confidence 7899999999 5999999999842 357999986544 44 4678999999999 99999965 2 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015172 387 LEALKPELKASIEKGVAF 404 (412)
Q Consensus 387 L~~sa~~L~~~i~~~~~~ 404 (412)
|++|++.|+++.+++..+
T Consensus 308 l~~s~~~l~~~~~~~~~~ 325 (326)
T PRK05442 308 IDATLAELEEERDAVKHL 325 (326)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999887654
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=9.9e-59 Score=460.55 Aligned_cols=290 Identities=25% Similarity=0.387 Sum_probs=260.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||+|||| |.||+++|+.++..++++||+|+|+++ ++|+++||.|+... ..+ .+. +++|+ +++|||+||+++
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~-~i~-~~~~~-~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPT-KIY-AGDYS-DCKDADLVVITA 81 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCe-EEE-eCCHH-HhCCCCEEEEec
Confidence 469999998 999999999999999999999999987 78999999998632 223 333 46786 699999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT 248 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~ 248 (412)
|.|++|||+|.|++..|+++++++++++++++|+++++++|||+| ++++++++.+|+|++||||+ |.||+.|+++
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d----~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~ 157 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----ILTYATWKLSGFPKERVIGSGTSLDSARFRY 157 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHH----HHHHHHHHHhCCCHHHEeecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 66778888889999999999 7899999999
Q ss_pred HHHHHcCCCCCCeeeeEEcccCCcccccccccCCC----CC-------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172 249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SV-------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317 (412)
Q Consensus 249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~-------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~ 317 (412)
++|+++|+++++|+++|+|+|| ++++|+||++++ .. .+++++++++.++++++|++|++.| |+++
T Consensus 158 ~la~~l~v~~~~V~~~viGeHG-~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t~ 233 (315)
T PRK00066 158 MLSEKLDVDPRSVHAYIIGEHG-DTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GATY 233 (315)
T ss_pred HHHHHhCCCcccEEEEEEecCC-CcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Ceeh
Confidence 9999999999999999999996 799999999863 21 1455678899999999999999988 7999
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172 318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK 395 (412)
Q Consensus 318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~ 395 (412)
|++|+++++++++|+++ ++.++|++.+ +++| ++++|||+||+||++||+++++ ++|+++|+++|++|+++|+
T Consensus 234 ~~~a~~~~~i~~ail~~---~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~---l~L~~~E~~~L~~s~~~l~ 307 (315)
T PRK00066 234 YGIAMALARITKAILNN---ENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVE---LPLNDDEKQKFAHSADVLK 307 (315)
T ss_pred HHHHHHHHHHHHHHHcC---CCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcC---CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 4689999855 4445 3567999999999999999999 7899999999999999999
Q ss_pred HHHHH
Q 015172 396 ASIEK 400 (412)
Q Consensus 396 ~~i~~ 400 (412)
+.++.
T Consensus 308 ~~~~~ 312 (315)
T PRK00066 308 EIMDE 312 (315)
T ss_pred HHHHH
Confidence 98875
No 16
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=1.7e-58 Score=456.23 Aligned_cols=287 Identities=30% Similarity=0.417 Sum_probs=257.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|+|||+ |.||+++|+.++..|++++|+|+|+++ ++++++||.|.........+..++||+ ++++||+||+++|.|+
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAADADIVVITAGAPR 78 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCCCCEEEEcCCCCC
Confidence 689998 999999999999999999999999987 789999999987542112333346786 7999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHH
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQ 252 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~ 252 (412)
+|||+|.|++..|++++++++++|+++||++++|++|||+| ++++++++.+|+||+||||+ |.||+.|+++++|+
T Consensus 79 ~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~ 154 (300)
T cd00300 79 KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAE 154 (300)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 67888899999999999999 78999999999999
Q ss_pred HcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC---ChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHH
Q 015172 253 KKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF---TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAA 325 (412)
Q Consensus 253 ~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~---~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~ 325 (412)
++++++++|+++|+|+|| ++++|+||+++ |..++ +++++++|.+++++++++|+++| |+++|++|++++
T Consensus 155 ~l~v~~~~v~~~viGeHg-~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~~ 230 (300)
T cd00300 155 KLDVDPQSVHAYVLGEHG-DSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAIA 230 (300)
T ss_pred HhCCCcccEEEEEEeccC-CceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHHH
Confidence 999999999999999996 79999999986 44332 34568899999999999999988 899999999999
Q ss_pred HHHHHHHhccCCCCCeEEeeeecC-CC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172 326 RFVESSLRALDGDGDVYECVFVES-NL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI 398 (412)
Q Consensus 326 ~ii~ail~~~~g~~~v~~~s~v~~-~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i 398 (412)
+++++|+++ ++.++||+++.. +| .+++|||+||+||++|++++++ ++|+++|+++|++|+++|++.+
T Consensus 231 ~~~~ai~~~---~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~---l~L~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd00300 231 DIVKSILLD---ERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILE---IPLTEDEEAKLQKSAEALKEVL 299 (300)
T ss_pred HHHHHHHcC---CCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEec---CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999998 478999997654 35 3578999999999999999998 7899999999999999999765
No 17
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.8e-58 Score=471.75 Aligned_cols=303 Identities=23% Similarity=0.305 Sum_probs=264.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhC-------CCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMS-------PLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKG 161 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~-------gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~ 161 (412)
.++.||+||||+|.||+++|+.|+.+ ++++||+|+|+++ ++|+++||.|+..+........+.||+ +++|
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye-~~kd 176 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYE-VFQD 176 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHH-HhCc
Confidence 34689999998899999999999999 7778999999987 799999999987443212222356886 7999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-c
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-T 239 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t 239 (412)
||+||+++|.||+|||+|.|++..|.+|++++++.|++ ++|++++|++|||+| ++++++++.+|++|+|+||+ |
T Consensus 177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD----v~t~v~~k~sg~~~~rViGtgT 252 (444)
T PLN00112 177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN----TNALICLKNAPNIPAKNFHALT 252 (444)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH----HHHHHHHHHcCCCCcceEEeec
Confidence 99999999999999999999999999999999999999 579999999999999 67888899999999999999 8
Q ss_pred ccchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhccc
Q 015172 240 TLDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAKA 311 (412)
Q Consensus 240 ~Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K~ 311 (412)
.||++||+++||+++|+++++|+ ++|||||| +++||+||+++ |..++ ++++ +++|.++++++|++|+++|
T Consensus 253 ~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHG-dsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~k- 330 (444)
T PLN00112 253 RLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKKW- 330 (444)
T ss_pred cHHHHHHHHHHHHHhCcCHHHcccceEEecCC-CceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhcc-
Confidence 99999999999999999999995 58999997 69999999986 44333 3334 6899999999999999987
Q ss_pred CCCchhh-hHHHHHHHHHHHHHhccCCCCCeEEeeee-cCC-C--CCCCceeeeEEEcCCceEEee-cCCCCCCCHHHHH
Q 015172 312 GAGSATL-SMAYAAARFVESSLRALDGDGDVYECVFV-ESN-L--TELPFFASRVKLGRNGVESLI-SSDLQGLTEYEQK 385 (412)
Q Consensus 312 g~gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~-i--~~~~~~s~Pv~igk~Gv~~v~-~~~l~~Lse~E~~ 385 (412)
|+++| ++|.++++++++|+.+.+ +++++|||++ +++ | ++++|||+||+||++|+++++ + ++|+++|++
T Consensus 331 --G~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~e---l~L~~~E~~ 404 (444)
T PLN00112 331 --GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKD---VEIDDYLRE 404 (444)
T ss_pred --CchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCC---CCCCHHHHH
Confidence 66666 999999999999994433 5789999865 442 5 467899999999999999999 6 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 015172 386 ALEALKPELKASIEKGVAFAQ 406 (412)
Q Consensus 386 ~L~~sa~~L~~~i~~~~~~~~ 406 (412)
+|++|+++|.++.+.+..++.
T Consensus 405 ~l~~Sa~~L~~e~~~~~~~~~ 425 (444)
T PLN00112 405 RIKKSEAELLAEKRCVAHLTG 425 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988776654
No 18
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-57 Score=452.45 Aligned_cols=297 Identities=31% Similarity=0.499 Sum_probs=263.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIia 168 (412)
+.+||+|||| |.||+++++.++..++ .+|+|+|+++ ++++++|+.|...... ...+.+++||+ +++|||+||++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEEC
Confidence 3579999998 9999999999999997 6899999987 5788899999753221 22455667997 89999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHH
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRAN 247 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~ 247 (412)
+|.|+++|++|+|++..|.+++++++++|+++||++|+|++|||+| ++++++++.+++|++||||+| .||++|++
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~ 156 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFR 156 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 668888899999999999995 89999999
Q ss_pred HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172 248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317 (412)
Q Consensus 248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~ 317 (412)
++||+++++++++|+++|+|||| ++++|+||+++ |.. .+++++++++.++++++|++|++++ |+|+|+
T Consensus 157 ~~la~~l~v~~~~v~~~viGeHg-~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~ 234 (319)
T PTZ00117 157 CNLAEKLGVSPGDVSAVVIGGHG-DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAF 234 (319)
T ss_pred HHHHHHhCCCcccceEEEeecCC-CcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChH
Confidence 99999999999999999999996 79999999985 322 2566678999999999999999974 448999
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172 318 LSMAYAAARFVESSLRALDGDGDVYECVF-VESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK 395 (412)
Q Consensus 318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~ 395 (412)
|++|+++++++++|+.| ++.++|||. ++++|. .++|||+||+||++|++++++ ++|+++|+++|++|++.|+
T Consensus 235 ~~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---l~l~~~E~~~l~~s~~~l~ 308 (319)
T PTZ00117 235 FAPAAAIVAMIEAYLKD---EKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIE---LELNAEEKELFDKSIESIQ 308 (319)
T ss_pred HHHHHHHHHHHHHHhcC---CCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 578999984 454552 357999999999999999999 7899999999999999999
Q ss_pred HHHHHHHH
Q 015172 396 ASIEKGVA 403 (412)
Q Consensus 396 ~~i~~~~~ 403 (412)
+.+++...
T Consensus 309 ~~~~~~~~ 316 (319)
T PTZ00117 309 ELTQKAKA 316 (319)
T ss_pred HHHHHHHH
Confidence 99887544
No 19
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3e-58 Score=458.17 Aligned_cols=294 Identities=29% Similarity=0.414 Sum_probs=257.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALKGV 162 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~a 162 (412)
.||+||||+|.||+++++.|+..++++ +|+|+|+++ ++++++||.|..++. .. .++ +.+|+ +++||
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~i~-~~~~~-~~~~a 77 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-VIT-TDPEE-AFKDV 77 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-EEe-cChHH-HhCCC
Confidence 389999988999999999999999988 499999985 688999999986432 12 333 35665 89999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCC-CCCCCeEeccc
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGV-YDPKKLFGVTT 240 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg-~~~~kviGlt~ 240 (412)
|+||++||.|++|||+|+|++..|++++++++++|++++ |++++|++|||+| ++++++++.+| +|++||||+|.
T Consensus 78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~vig~t~ 153 (323)
T cd00704 78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPAN----TNALIALKNAPNLPPKNFTALTR 153 (323)
T ss_pred CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEeeH
Confidence 999999999999999999999999999999999999997 9999999999999 66788899999 59999999999
Q ss_pred cchHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC----ChHH--HHHHHHHHhhccchhhhc
Q 015172 241 LDVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF----TDEE--VGDLTVRIQNAGTEVVEA 309 (412)
Q Consensus 241 Lds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~----~~~~--~~~l~~~v~~~g~eii~~ 309 (412)
|||+|||++||++++++|++|+ ++|||||| ++++|+||+++ |..++ .+++ .++|.+++++++++|+++
T Consensus 154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~ 232 (323)
T cd00704 154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHS-NTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK 232 (323)
T ss_pred HHHHHHHHHHHHHhCcCHHHceeeeEEeccc-CceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999999999999995 68999997 59999999985 33222 2234 578999999999999999
Q ss_pred ccCCCchhhh-HHHHHHHHHHHHHhccCCCCCeEEee-eecCCC---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHH
Q 015172 310 KAGAGSATLS-MAYAAARFVESSLRALDGDGDVYECV-FVESNL---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQ 384 (412)
Q Consensus 310 K~g~gst~~s-~A~a~~~ii~ail~~~~g~~~v~~~s-~v~~~i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~ 384 (412)
| |+|+|+ +|+++++++++|++|.+++ .++||| +++++| +++.|||+||+||++||+++++ ++|+++|+
T Consensus 233 k---g~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~---l~L~~~E~ 305 (323)
T cd00704 233 R---GASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVED---LKLNDWLR 305 (323)
T ss_pred c---CcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecC---CCCCHHHH
Confidence 8 788886 7999999999999996422 799998 455545 3567999999999999999998 78999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015172 385 KALEALKPELKASIEKGV 402 (412)
Q Consensus 385 ~~L~~sa~~L~~~i~~~~ 402 (412)
++|++|++.|+++.++++
T Consensus 306 ~~l~~s~~~l~~~~~~~~ 323 (323)
T cd00704 306 EKLKATEEELIEEKEIAL 323 (323)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999988753
No 20
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-57 Score=453.19 Aligned_cols=292 Identities=31% Similarity=0.544 Sum_probs=259.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||+|||| |.||+++|+.++..++ .+|+|+|+++ +++.++|+.|.... .....+.+++||+ +++|||+||+++
T Consensus 6 ~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~-~l~~aDiVI~ta 82 (321)
T PTZ00082 6 RRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE-DIAGSDVVIVTA 82 (321)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH-HhCCCCEEEECC
Confidence 469999998 9999999999999998 4699999988 57788999987422 1122455668996 899999999999
Q ss_pred CCCCCCCC-----chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccch
Q 015172 170 GVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDV 243 (412)
Q Consensus 170 g~p~k~g~-----~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds 243 (412)
|.|++||+ +|+|++.+|++++++++++|+++||++++|++|||+| ++++++++.+++|++||||+| .||+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt~lds 158 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAGVLDS 158 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecCcccH
Confidence 99999999 9999999999999999999999999999999999999 667888899999999999994 8999
Q ss_pred HHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCC
Q 015172 244 VRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGA 313 (412)
Q Consensus 244 ~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~ 313 (412)
+|++++||+++++++++|+++|+|||| +++||+||+++ |..+ ++++++++|.++++++|++|+++| |+
T Consensus 159 ~R~~~~la~~l~v~~~~v~~~viGeHg-~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gk 236 (321)
T PTZ00082 159 SRLRTYIAEKLGVNPRDVHASVIGAHG-DKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GT 236 (321)
T ss_pred HHHHHHHHHHhCCCcccceeeEEecCC-CceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CC
Confidence 999999999999999999999999995 79999999985 3221 456678999999999999999975 45
Q ss_pred CchhhhHHHHHHHHHHHHHhccCCCCCeEEeee-ecCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172 314 GSATLSMAYAAARFVESSLRALDGDGDVYECVF-VESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391 (412)
Q Consensus 314 gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~-v~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa 391 (412)
|+|+||+|.++++++++|+.| +++++|||. ++++|. +++|+|+||+||++|++++++ ++|+++|+++|++|+
T Consensus 237 g~t~~~ia~a~~~i~~ail~d---~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~sa 310 (321)
T PTZ00082 237 GSAYFAPAAAAIEMAEAYLKD---KKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIE---LDLTPEEQKKFDESI 310 (321)
T ss_pred CccHHHHHHHHHHHHHHHHcC---CCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHH
Confidence 899999999999999999998 578999985 455552 457999999999999999999 789999999999999
Q ss_pred HHHHHHHH
Q 015172 392 PELKASIE 399 (412)
Q Consensus 392 ~~L~~~i~ 399 (412)
+.|++.++
T Consensus 311 ~~i~~~~~ 318 (321)
T PTZ00082 311 KEVKRLEA 318 (321)
T ss_pred HHHHHHHh
Confidence 99998764
No 21
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=1.2e-57 Score=451.42 Aligned_cols=288 Identities=28% Similarity=0.419 Sum_probs=257.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
+||+|||+ |.||+++|+.++..|+.++|+|+|+++ +++.++||.|..... .. .+. +.+++ ++++||+||+++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~-~~~~~-~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIK-AGDYS-DCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEE-cCCHH-HhCCCCEEEEcc
Confidence 48999998 999999999999999888999999987 688899999875322 22 222 35776 699999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT 248 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~ 248 (412)
|.|++|||+|.|++..|++++++++++|++++|++++|++|||+| ++++++++.+++||+||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 67888999999999999999 7899999999
Q ss_pred HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC------CChHHHHHHHHHHhhccchhhhcccCCCchhh
Q 015172 249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS------FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318 (412)
Q Consensus 249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~------~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~ 318 (412)
+||+++++++++|+++|||+|| ++++|+||+++ |..+ +.+++++++.++++++|++|+++| |+|+|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg-~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHG-DSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCC-CceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence 9999999999999999999996 79999999986 3322 345668999999999999999988 89999
Q ss_pred hHHHHHHHHHHHHHhccCCCCCeEEeeeec-CCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHH
Q 015172 319 SMAYAAARFVESSLRALDGDGDVYECVFVE-SNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKA 396 (412)
Q Consensus 319 s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~ 396 (412)
++|.++++++++|+.+ ++.++||+... ++| .+++|||+||+||++|++++++ ++|+++|+++|++|+++|++
T Consensus 229 ~~a~a~~~~~~ail~~---~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~s~~~l~~ 302 (306)
T cd05291 229 GIATALARIVKAILND---ENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIE---LDLTEEEQEKFEKSADIIKE 302 (306)
T ss_pred HHHHHHHHHHHHHHcC---CCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEEC---CCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999998 57899998654 445 3467999999999999999999 78999999999999999998
Q ss_pred HHH
Q 015172 397 SIE 399 (412)
Q Consensus 397 ~i~ 399 (412)
.++
T Consensus 303 ~~~ 305 (306)
T cd05291 303 NIK 305 (306)
T ss_pred Hhh
Confidence 764
No 22
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=9.1e-58 Score=451.87 Aligned_cols=291 Identities=29% Similarity=0.469 Sum_probs=258.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
|||+|||+ |.||.++|+.++.+|+. +|+|+|+++ ..+.+.|+.|...... ...++.++||+ .+++||+||+++|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence 69999998 99999999999999987 799999987 5667788888653211 23455678997 4999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF 249 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~ 249 (412)
.|+++|++|+|++..|++++++++++|.+++|++++|++|||+| ++++++++.+|+|++||||+ |.|||+|++++
T Consensus 79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~ 154 (305)
T TIGR01763 79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF 154 (305)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 77888899999999999999 58999999999
Q ss_pred HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHH
Q 015172 250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAA 324 (412)
Q Consensus 250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~ 324 (412)
||++|++++++|+++|+|||| ++++|+||+++ |..+ ++++++++|.++++++|++|++.| |+|+|+|++|+++
T Consensus 155 la~~l~v~~~~v~~~v~GeHg-~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~ 232 (305)
T TIGR01763 155 IAMELGVSVQDVTACVLGGHG-DAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASV 232 (305)
T ss_pred HHHHhCcCHHHeeeeEEecCC-CcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence 999999999999999999996 79999999985 4433 345568999999999999999985 4589999999999
Q ss_pred HHHHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 015172 325 ARFVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIE 399 (412)
Q Consensus 325 ~~ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~ 399 (412)
++|+++|+.| ++.++|||.. +++| .+++|+|+||+||++||+++++ ++|+++|+++|++|+..|++.++
T Consensus 233 ~~i~~ai~~~---~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~---~~l~~~E~~~l~~s~~~i~~~~~ 303 (305)
T TIGR01763 233 VEMVEAILKD---RKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYE---LKLDQSELALLNKSAKIVDENCK 303 (305)
T ss_pred HHHHHHHhCC---CCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 4679999854 4445 2567999999999999999999 78999999999999999998764
No 23
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-57 Score=451.94 Aligned_cols=294 Identities=25% Similarity=0.392 Sum_probs=259.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCC--ceeeecCCCcHHhhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPS--QVLDFTGPEELASALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al~~ 161 (412)
++||+||||+|.||+++|+.++..++++ ||+|+|+++ ++|+++||.|+.++. .+ .++ +.+|+ +++|
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~i~-~~~~~-~~~d 78 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-VIT-DDPNV-AFKD 78 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-EEe-cCcHH-HhCC
Confidence 5799999988999999999999999999 999999954 689999999987442 22 344 46776 7999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEecc
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGVT 239 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGlt 239 (412)
||+||++||.|++|||+|.|++..|++++++++++|++++ |++++|++|||+| ++++++++.+ ++||+||||+|
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~sg~~p~~~ViG~t 154 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCN----TNALIAMKNAPDIPPDNFTAMT 154 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHH----HHHHHHHHHcCCCChHheEEeh
Confidence 9999999999999999999999999999999999999999 5999999999999 6677788888 59999999999
Q ss_pred ccchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCC----CCCC-CChHH--HHHHHHHHhhccchhhhccc
Q 015172 240 TLDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTM----PSVS-FTDEE--VGDLTVRIQNAGTEVVEAKA 311 (412)
Q Consensus 240 ~Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~--~~~l~~~v~~~g~eii~~K~ 311 (412)
.||++||++++|+++|+++++|++ +|+|+|| ++++|+||++. |..+ +.+.+ +++|.+++++++++|+++|
T Consensus 155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG-~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 232 (322)
T cd01338 155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS-PTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR- 232 (322)
T ss_pred HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc-ccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc-
Confidence 999999999999999999999998 5689996 69999999985 4433 34443 6799999999999999988
Q ss_pred CCCchhhhHH-HHHHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172 312 GAGSATLSMA-YAAARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387 (412)
Q Consensus 312 g~gst~~s~A-~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L 387 (412)
|+++|+++ +++++++++||+|.+ ++.++||+.+.. +| ++++|||+||+||++||+++++ ++|+++|+++|
T Consensus 233 --G~t~~~~~a~a~~~iv~ail~~~~-~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~---l~L~~~E~~~l 306 (322)
T cd01338 233 --GASSAASAANAAIDHMRDWVLGTP-EGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEG---LEIDDFAREKI 306 (322)
T ss_pred --CCccHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeC---CCCCHHHHHHH
Confidence 78999999 599999999999853 247999986644 44 4678999999999999999999 78999999999
Q ss_pred HHHHHHHHHHHHHH
Q 015172 388 EALKPELKASIEKG 401 (412)
Q Consensus 388 ~~sa~~L~~~i~~~ 401 (412)
++|++.|+++.++.
T Consensus 307 ~~s~~~l~~~~~~~ 320 (322)
T cd01338 307 DATLAELLEEREAV 320 (322)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 24
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=2.9e-57 Score=458.09 Aligned_cols=300 Identities=23% Similarity=0.314 Sum_probs=260.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEE--ecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLY--DVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN 163 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~--Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD 163 (412)
+.||+||||+|.||+++|+.++..++++ .|+|+ |+++ ++|+++||.|+..+........+++|+ +++|||
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~-~~kdaD 122 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDAD 122 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHH-HhCCCC
Confidence 5899999988999999999999999998 57777 5555 789999999987442112111346786 799999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-ccc
Q 015172 164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTL 241 (412)
Q Consensus 164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~L 241 (412)
+||+++|.||+|||+|.|++..|++|++++++.|++++ |++++||+|||+| ++++++++.+|++|+|+||+ |.|
T Consensus 123 IVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD----v~t~v~~k~sg~~~~rviG~gT~L 198 (387)
T TIGR01757 123 WALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN----TNALIAMKNAPNIPRKNFHALTRL 198 (387)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH----HHHHHHHHHcCCCcccEEEecchh
Confidence 99999999999999999999999999999999999988 9999999999999 67888899999999999999 899
Q ss_pred chHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCC----CCCCC-ChHH--HHHHHHHHhhccchhhhcccCC
Q 015172 242 DVVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTM----PSVSF-TDEE--VGDLTVRIQNAGTEVVEAKAGA 313 (412)
Q Consensus 242 ds~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~----p~~~~-~~~~--~~~l~~~v~~~g~eii~~K~g~ 313 (412)
|++|+|++||+++++++++|+ ++|||||| +++||+||+++ |..++ ++.+ +++|.++++++|++|++.|
T Consensus 199 DsaR~r~~LA~~l~v~~~~V~~~~V~GeHG-ds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~K--- 274 (387)
T TIGR01757 199 DENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKKW--- 274 (387)
T ss_pred HHHHHHHHHHHHHCcChhHcceeEEEecCC-CcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhcc---
Confidence 999999999999999999995 99999997 79999999985 54443 3323 6899999999999999987
Q ss_pred Cchhh-hHHHHHHHHHHHHHhccCCCCCeEEeeeec-CC-C--CCCCceeeeEEEcCCceEEee-cCCCCCCCHHHHHHH
Q 015172 314 GSATL-SMAYAAARFVESSLRALDGDGDVYECVFVE-SN-L--TELPFFASRVKLGRNGVESLI-SSDLQGLTEYEQKAL 387 (412)
Q Consensus 314 gst~~-s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~-i--~~~~~~s~Pv~igk~Gv~~v~-~~~l~~Lse~E~~~L 387 (412)
|+++| ++|.++++++++|+.+.+ ++.++|+|.+. ++ | +++.|||+||+||++|+++++ + ++|+++|+++|
T Consensus 275 G~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~---l~L~~~E~~~l 350 (387)
T TIGR01757 275 GRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATD---VSMDDFLRERI 350 (387)
T ss_pred CchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCC---CCCCHHHHHHH
Confidence 65666 999999999999994433 46799998664 42 5 467899999999999999997 7 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 015172 388 EALKPELKASIEKGVAFA 405 (412)
Q Consensus 388 ~~sa~~L~~~i~~~~~~~ 405 (412)
++|+++|+++.+.++..+
T Consensus 351 ~~Sa~~L~~e~~~~~~~~ 368 (387)
T TIGR01757 351 RKSEDELLKEKECVAHLI 368 (387)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999988764
No 25
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.8e-56 Score=442.01 Aligned_cols=288 Identities=30% Similarity=0.443 Sum_probs=257.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
|||+|||+ |.||.++|+.++.+|++++|+|+|+++ ..+++.|+.|.... .... +. ++|++ ++++||+||+++|
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~-i~-~~d~~-~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVR-IY-AGDYA-DCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeE-Ee-eCCHH-HhCCCCEEEEccC
Confidence 69999998 999999999999999889999999987 67899999998532 1222 33 46786 7999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHH
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTF 249 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~ 249 (412)
.|++++++|.|++..|+++++++++++++++|+++++++|||+| ++++++++.+|+|++||||+ |.||++|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999 66778888899999999999 89999999999
Q ss_pred HHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCC--------CCChHHHHHHHHHHhhccchhhhcccCCCchh
Q 015172 250 VAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSV--------SFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317 (412)
Q Consensus 250 la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~--------~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~ 317 (412)
||+++++++++|+++|+|||| ++++|+||+++ |.. .++++++++|.++++++|++|+++| |+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg-~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHG-DSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCC-CcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence 999999999999999999996 79999999985 321 2445668999999999999999998 8999
Q ss_pred hhHHHHHHHHHHHHHhccCCCCCeEEeeee-cCCCC-CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHH
Q 015172 318 LSMAYAAARFVESSLRALDGDGDVYECVFV-ESNLT-ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELK 395 (412)
Q Consensus 318 ~s~A~a~~~ii~ail~~~~g~~~v~~~s~v-~~~i~-~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~ 395 (412)
|++|+++++|+++|+.+ ++.++||++. +++|. .++|||+||+||++|++++++ ++||++|+++|++|++.|+
T Consensus 229 ~~~a~a~~~i~~ail~~---~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~---~~L~~~E~~~l~~s~~~i~ 302 (308)
T cd05292 229 YAIGLALARIVEAILRD---ENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLP---PPLSEEEEEALRASAEVLK 302 (308)
T ss_pred HHHHHHHHHHHHHHHcC---CCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecC---CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999998 5789999854 44452 456999999999999999999 7899999999999999999
Q ss_pred HHHH
Q 015172 396 ASIE 399 (412)
Q Consensus 396 ~~i~ 399 (412)
+.++
T Consensus 303 ~~~~ 306 (308)
T cd05292 303 EAIE 306 (308)
T ss_pred HHHh
Confidence 8875
No 26
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=2.8e-55 Score=436.96 Aligned_cols=295 Identities=26% Similarity=0.345 Sum_probs=254.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCC-CcHHhhcCCCcE
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGP-EELASALKGVNV 164 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t-~d~~~al~~aDi 164 (412)
||+||||+|.||+++++.|+..++++ +|+|+|+++ ++++++||.|+..+.. ..+..+ .+|+ +++|||+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~-~~~~aDi 78 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAV-AFTDVDV 78 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHH-HhCCCCE
Confidence 69999998999999999999999886 799999954 6789999999974432 223333 4465 8999999
Q ss_pred EEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172 165 VVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD 242 (412)
Q Consensus 165 VIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld 242 (412)
||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+| ++++++++.+|.+|.++||+ |.||
T Consensus 79 VVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvD----v~t~v~~~~sg~~~~~vig~gt~LD 154 (324)
T TIGR01758 79 AILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPAN----TNALVLSNYAPSIPPKNFSALTRLD 154 (324)
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCcceEEEeeehH
Confidence 9999999999999999999999999999999999996 9999999999999 67888899988888889999 8999
Q ss_pred hHHHHHHHHHHcCCCCCCee-eeEEcccCCcccccccccCCCC-C-------C-CChHH--HHHHHHHHhhccchhhhcc
Q 015172 243 VVRANTFVAQKKNLKLIDVD-VPVVGGHAGITILPLLSKTMPS-V-------S-FTDEE--VGDLTVRIQNAGTEVVEAK 310 (412)
Q Consensus 243 s~R~~~~la~~l~v~~~~V~-~~ViG~hgg~~~vp~~S~~~p~-~-------~-~~~~~--~~~l~~~v~~~g~eii~~K 310 (412)
|+|||++||+++++++++|+ ++|||||| +++||+||++++. . + +++++ +++|.+++++++++|++.|
T Consensus 155 s~R~r~~la~~l~v~~~~V~~~~V~GeHG-~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 233 (324)
T TIGR01758 155 HNRALAQVAERAGVPVSDVKNVIIWGNHS-STQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR 233 (324)
T ss_pred HHHHHHHHHHHhCCChhhceEeEEEECCC-CCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc
Confidence 99999999999999999996 59999997 6999999998655 2 2 23333 5789999999999999976
Q ss_pred cCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec-CC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE-SN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386 (412)
Q Consensus 311 ~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~ 386 (412)
. |+++|++|.++++++++|+.+.+ ++.++|||.+. ++ | ++++|||+||+||++|++.+.+ ++|+++|+++
T Consensus 234 ~--~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~e---l~L~~~E~~~ 307 (324)
T TIGR01758 234 K--LSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEG---LCVDDSSRKK 307 (324)
T ss_pred C--CCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecC---CCCCHHHHHH
Confidence 2 58999999999999999994432 56799998654 34 4 3568999999999777777776 6899999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015172 387 LEALKPELKASIEKGV 402 (412)
Q Consensus 387 L~~sa~~L~~~i~~~~ 402 (412)
|++|++.|++.+++++
T Consensus 308 l~~s~~~lk~~~~~~~ 323 (324)
T TIGR01758 308 LALTAKELEEERDEAL 323 (324)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 27
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=7.3e-55 Score=430.16 Aligned_cols=288 Identities=33% Similarity=0.536 Sum_probs=254.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
|+|||| |.||.++|+.++..++. +|+|+|+++ +++.++|+.|..... ....+..++||+ ++++||+||+++|.|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecCCC
Confidence 689998 99999999999999988 999999987 567777888764221 112455567886 699999999999999
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc-ccchHHHHHHHH
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT-TLDVVRANTFVA 251 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt-~Lds~R~~~~la 251 (412)
+++|++|+|++.+|++++++++++|+++||++++|++|||+| ++++++++.+++||+||||+| .||++|++++||
T Consensus 78 ~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la 153 (300)
T cd01339 78 RKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIA 153 (300)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 678888899999999999995 799999999999
Q ss_pred HHcCCCCCCeeeeEEcccCCcccccccccCCC----CCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHH
Q 015172 252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMP----SVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAAR 326 (412)
Q Consensus 252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p----~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ 326 (412)
++|++++++|+++|+|+|| ++++|+||+++. ..+ +++++++++.+++++++++|++.| |+|+|+|++|.++++
T Consensus 154 ~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~ 231 (300)
T cd01339 154 EELGVSVKDVQAMVLGGHG-DTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAE 231 (300)
T ss_pred HHhCCCccceEEEEEeCCC-CcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHH
Confidence 9999999999999999995 799999999863 333 345568999999999999999987 568999999999999
Q ss_pred HHHHHHhccCCCCCeEEeeee-cCCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172 327 FVESSLRALDGDGDVYECVFV-ESNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI 398 (412)
Q Consensus 327 ii~ail~~~~g~~~v~~~s~v-~~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i 398 (412)
|+++|+.+ ++.++||+.. ++.| ..++|||+||+||++|++++++ ++||++|+++|++|++.|++.+
T Consensus 232 i~~ail~~---~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~---l~l~~~E~~~l~~s~~~l~~~~ 299 (300)
T cd01339 232 MVEAILKD---KKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIE---LDLTDEEKEAFDKSVESVKELI 299 (300)
T ss_pred HHHHHHcC---CCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999998 5789999854 4444 2367999999999999999999 7899999999999999999865
No 28
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.1e-54 Score=433.23 Aligned_cols=296 Identities=25% Similarity=0.347 Sum_probs=254.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKGVN 163 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD 163 (412)
+.||+|+||+|++|+++++.|+..++++ +|+|+|+++ ++++++|+.|+.++..- .+..++++.++++|||
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~-~~~~~~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLK-SVVATTDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccC-CceecCCHHHHhCCCC
Confidence 5799999999999999999999988875 999999964 57888999998644221 2222456656899999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHh-CCCCCCCeEec-cc
Q 015172 164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQK-GVYDPKKLFGV-TT 240 (412)
Q Consensus 164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~-sg~~~~kviGl-t~ 240 (412)
+||++||.|++++++|.+++..|++|++++++.|++++ |++++|++|||+| ++++++++. +++|+++ ||+ |.
T Consensus 81 iVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD----~~t~~~~k~~~~~~~~~-ig~gt~ 155 (325)
T cd01336 81 VAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPAN----TNALILLKYAPSIPKEN-FTALTR 155 (325)
T ss_pred EEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHH----HHHHHHHHHcCCCCHHH-EEeeeh
Confidence 99999999999999999999999999999999999997 8999999999999 667778887 5777777 888 89
Q ss_pred cchHHHHHHHHHHcCCCCCCeee-eEEcccCCcccccccccCCCC--------CCC-ChHH--HHHHHHHHhhccchhhh
Q 015172 241 LDVVRANTFVAQKKNLKLIDVDV-PVVGGHAGITILPLLSKTMPS--------VSF-TDEE--VGDLTVRIQNAGTEVVE 308 (412)
Q Consensus 241 Lds~R~~~~la~~l~v~~~~V~~-~ViG~hgg~~~vp~~S~~~p~--------~~~-~~~~--~~~l~~~v~~~g~eii~ 308 (412)
||++|++++||+++++++++|+. +|||||| +++||+||++++. .++ ++++ +++|.+++++++++|++
T Consensus 156 LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG-~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~ 234 (325)
T cd01336 156 LDHNRAKSQIALKLGVPVSDVKNVIIWGNHS-STQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIK 234 (325)
T ss_pred HHHHHHHHHHHHHhCcChhhceEeEEEEcCC-CCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999975 5889997 5999999998654 222 3333 58999999999999999
Q ss_pred cccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeec-CCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHH
Q 015172 309 AKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVE-SNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQK 385 (412)
Q Consensus 309 ~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~-~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~ 385 (412)
+| +|+|+|++|.++++++++||+|.+ ++.++||+.+. ++| ++++|||+||+||++||+++++ ++|+++|++
T Consensus 235 ~~--~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~---~~L~~~E~~ 308 (325)
T cd01336 235 AR--KLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQG---LSIDDFSRE 308 (325)
T ss_pred cc--ccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecC---CCCCHHHHH
Confidence 75 279999999999999999999742 35799998654 444 4678999999999999999999 789999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 015172 386 ALEALKPELKASIEKG 401 (412)
Q Consensus 386 ~L~~sa~~L~~~i~~~ 401 (412)
+|++|++.|+++++.+
T Consensus 309 ~l~~s~~~l~~e~~~~ 324 (325)
T cd01336 309 KIDATAKELVEEKETA 324 (325)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=4e-54 Score=425.69 Aligned_cols=293 Identities=32% Similarity=0.539 Sum_probs=257.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|+||+|||| |.||+++|+.++..++. +|+|+|+++ +++.+.|+.|..... ....++.++||+ ++++||+||+++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~-~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE-DIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH-HHCCCCEEEECC
Confidence 689999999 99999999999999987 999999987 577788888864322 112455668886 799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHH
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANT 248 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~ 248 (412)
|.|+++|++|+|++.+|++++++++++|++++|++++|++|||+| ++++++++.+++||+||||+ |.||++|+++
T Consensus 79 ~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~~ 154 (307)
T PRK06223 79 GVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFRT 154 (307)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHHH
Confidence 999999999999999999999999999999999999999999999 67888889999999999999 5899999999
Q ss_pred HHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCC-CChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHH
Q 015172 249 FVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVS-FTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323 (412)
Q Consensus 249 ~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~-~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a 323 (412)
+||+++++++++|+++|+|+|| ++++|+||+++ |..+ ++++.+++|.+++++.+++|++.+ ++|++.|++|.+
T Consensus 155 ~la~~l~v~~~~v~~~viGehg-~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~ 232 (307)
T PRK06223 155 FIAEELNVSVKDVTAFVLGGHG-DSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAAS 232 (307)
T ss_pred HHHHHhCcChhhCcccEEcCCC-CcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHH
Confidence 9999999999999999999996 69999999985 3333 455557899999999999999972 237899999999
Q ss_pred HHHHHHHHHhccCCCCCeEEeeeec-CCC-CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 015172 324 AARFVESSLRALDGDGDVYECVFVE-SNL-TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400 (412)
Q Consensus 324 ~~~ii~ail~~~~g~~~v~~~s~v~-~~i-~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~ 400 (412)
+++++++|+.+ ++.+++++... +.| .+++|||+||+||++|++++++ ++|+++|+++|++|+++|++.++.
T Consensus 233 ~~~ii~ail~~---~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~---~~l~~~e~~~l~~s~~~l~~~~~~ 305 (307)
T PRK06223 233 IAEMVEAILKD---KKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIE---LELDDEEKAAFDKSVEAVKKLIEA 305 (307)
T ss_pred HHHHHHHHHcC---CCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeC---CCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999987 46899998554 333 2567999999999999999999 789999999999999999988764
No 30
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=5.9e-54 Score=425.43 Aligned_cols=291 Identities=27% Similarity=0.466 Sum_probs=256.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIia 168 (412)
|||+|+||+|.+|+.+++.++..|+.++|+|+|+++ +++.++|+.|...... ...++.++||+ ++++||+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence 699999988999999999999999988999999954 5788889988642211 11355566786 69999999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHH
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRAN 247 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~ 247 (412)
+|.|++||++|.|++..|+++++++++.|.+++|++++||++||+| ++++++++.+|+|++||||+ |.||++|++
T Consensus 80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd----~~t~~~~~~~g~~~~~viG~gt~LDs~R~~ 155 (309)
T cd05294 80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVD----VMTYKALKESGFDKNRVFGLGTHLDSLRFK 155 (309)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCCHHHEeeccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 66888889899999999999 789999999
Q ss_pred HHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CCCCC---ChHHHHHHHHHHhhccchhhhcccCCCchhhhH
Q 015172 248 TFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PSVSF---TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320 (412)
Q Consensus 248 ~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~~~~---~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~ 320 (412)
++||+++++++++|+++|+|||| ++++|+||+++ |..++ .+++++++.++++++|++|++.| |+++|++
T Consensus 156 ~~la~~l~v~~~~v~~~viGeHg-~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~~ 231 (309)
T cd05294 156 VAIAKHFNVHISEVHTRIIGEHG-DSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYGP 231 (309)
T ss_pred HHHHHHHCcChHHeEEEEEecCC-CceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhhH
Confidence 99999999999999999999996 79999999986 33232 24568899999999999999998 6789999
Q ss_pred HHHHHHHHHHHHhccCCCCCeEEeeeecC-CCC--CCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHH
Q 015172 321 AYAAARFVESSLRALDGDGDVYECVFVES-NLT--ELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKAS 397 (412)
Q Consensus 321 A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i~--~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~ 397 (412)
|.++++++++|+.| ++.++|++.... .|. .+.|+|+||+||++|++++++ ++|+++|+++|++|++.|++.
T Consensus 232 a~~~~~ii~ail~~---~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~---l~l~~~E~~~l~~s~~~i~~~ 305 (309)
T cd05294 232 ASAISNLVRTIAND---ERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVP---IEMDDDEREAFRKSAEIVKKY 305 (309)
T ss_pred HHHHHHHHHHHHCC---CCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeC---CCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 568999986543 342 256999999999999999999 689999999999999999987
Q ss_pred HH
Q 015172 398 IE 399 (412)
Q Consensus 398 i~ 399 (412)
++
T Consensus 306 ~~ 307 (309)
T cd05294 306 TR 307 (309)
T ss_pred Hh
Confidence 65
No 31
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=1e-52 Score=415.34 Aligned_cols=272 Identities=24% Similarity=0.363 Sum_probs=237.6
Q ss_pred eEEEEecCc----hhhhhhhhcccCCCCceeeecCCCc-HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHH
Q 015172 121 ALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEE-LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVE 195 (412)
Q Consensus 121 ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~ 195 (412)
.|+|+|+++ ++|+++||.|+..+. ...+..++| |+ +++|||+||++||.|++|||+|.|++..|+++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~-~~~i~~~~~~y~-~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~ 92 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPL-LKGVVATTDVVE-ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQAS 92 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHh-cCCcEecCCHHH-HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 899999976 689999999987432 112233345 75 89999999999999999999999999999999999999
Q ss_pred HHHhh-CCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccchHHHHHHHHHHcCCCCCCe-eeeEEcccCCc
Q 015172 196 AVADN-CPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGI 272 (412)
Q Consensus 196 ~i~~~-~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Lds~R~~~~la~~l~v~~~~V-~~~ViG~hgg~ 272 (412)
.|.++ +|++++|++|||+| ++++++++.+++||+|+||+ |.||++|||++||+++++++++| +++|||||| +
T Consensus 93 ~i~~~~~p~aivivvsNPvD----v~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG-~ 167 (309)
T PLN00135 93 ALEKHAAPDCKVLVVANPAN----TNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS-S 167 (309)
T ss_pred HHHHhcCCCeEEEEeCCcHH----HHHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCC-C
Confidence 99996 79999999999999 67888899999999999999 89999999999999999999999 689999997 5
Q ss_pred ccccccccCCC--------CCCC-ChHH--HHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCe
Q 015172 273 TILPLLSKTMP--------SVSF-TDEE--VGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDV 341 (412)
Q Consensus 273 ~~vp~~S~~~p--------~~~~-~~~~--~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v 341 (412)
++||+||+++. ..++ .+++ +++|.++++++|++|+++| +|+|+||+|.++++++++|+.+.+ ++.+
T Consensus 168 s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~v 244 (309)
T PLN00135 168 TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGTW 244 (309)
T ss_pred ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCeE
Confidence 99999999865 2232 3444 6889999999999999974 279999999999999999999532 4689
Q ss_pred EEeeee-cCCC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172 342 YECVFV-ESNL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405 (412)
Q Consensus 342 ~~~s~v-~~~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~ 405 (412)
+|||.+ +++| ++++|||+||++|++|++.+++ ++|+++|+++|++|++.|+++.+++++.|
T Consensus 245 ~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~---l~L~~~E~~~l~~S~~~lk~~~~~~~~~~ 308 (309)
T PLN00135 245 VSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQG---LSIDEFSRKKMDATAKELKEEKELAYSCL 308 (309)
T ss_pred EEEEEEecCccCCcCCeEEEEEEEEECCEEEEecC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999865 4444 4678999999999999999988 78999999999999999999999998765
No 32
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2e-51 Score=406.95 Aligned_cols=275 Identities=21% Similarity=0.284 Sum_probs=236.4
Q ss_pred hCCCCCeEEEEecCc----hhhhhhhhcccCCCC-ceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHH
Q 015172 115 MSPLVSALHLYDVMN----VKGVAADLSHCNTPS-QVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI 189 (412)
Q Consensus 115 ~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~-~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i 189 (412)
..++ .|+|+|+++ ++|+++||.|+..+. ... +. ++||+++++|||+||++||.||+|||+|.|++..|++|
T Consensus 13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~-i~-~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I 88 (313)
T TIGR01756 13 NRPV--CLHLLEIPPALNRLEALAMELEDCAFPNLAGT-IV-TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPI 88 (313)
T ss_pred CCeE--EEEEecCCCccchhHhHHHHHHHhccccCCce-Ee-cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHH
Confidence 4556 899999976 689999999997332 122 22 46786689999999999999999999999999999999
Q ss_pred HHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHH-HHhCCCCCCCeEec-cccchHHHHHHHHHHcCCCCCCeeee-E
Q 015172 190 VKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVL-KQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVP-V 265 (412)
Q Consensus 190 ~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~-~~~sg~~~~kviGl-t~Lds~R~~~~la~~l~v~~~~V~~~-V 265 (412)
++++++.|++++ |++++|++|||+| ++++++ ++.+|+|++ +||+ |.||++|||++||++++++|++|+.+ |
T Consensus 89 ~~~i~~~i~~~a~~~~ivivvtNPvD----v~t~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 163 (313)
T TIGR01756 89 FKATGEALSEYAKPTVKVLVIGNPVN----TNCLVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163 (313)
T ss_pred HHHHHHHHHhhCCCCeEEEEeCCchH----HHHHHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEE
Confidence 999999999999 5688999999999 678888 699999999 9999 89999999999999999999999765 9
Q ss_pred EcccCCcccccccccCCC--CC----C---CChH-HHHHHHHHHhhccchhhhcccCCCchhhhHH-HHHHHHHHHHHhc
Q 015172 266 VGGHAGITILPLLSKTMP--SV----S---FTDE-EVGDLTVRIQNAGTEVVEAKAGAGSATLSMA-YAAARFVESSLRA 334 (412)
Q Consensus 266 iG~hgg~~~vp~~S~~~p--~~----~---~~~~-~~~~l~~~v~~~g~eii~~K~g~gst~~s~A-~a~~~ii~ail~~ 334 (412)
||||| +++||+||+++. .. . ++++ .++++.++++++|++|+++| |+|+|+++ .++++++++|+++
T Consensus 164 ~GeHG-~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~ail~~ 239 (313)
T TIGR01756 164 WGNHA-ESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKAWLFG 239 (313)
T ss_pred EECCC-CceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHHHhcC
Confidence 99996 799999999865 21 1 2332 36899999999999999988 79999988 6999999999996
Q ss_pred cCCCCCeEEeeee-c-C-CC--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015172 335 LDGDGDVYECVFV-E-S-NL--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405 (412)
Q Consensus 335 ~~g~~~v~~~s~v-~-~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i~~~~~~~ 405 (412)
.+ +++++|||.+ + + +| +++.|||+||+||++|++++++ | ++|+++|+++|++|+.+|+++.+.+++.|
T Consensus 240 ~~-~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive-~-l~L~~~E~~~l~~Sa~~l~~e~~~~~~~~ 312 (313)
T TIGR01756 240 TR-PGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVE-N-FELNPWLKTKLAQTEKDLFEERETALKAL 312 (313)
T ss_pred CC-CCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcC-C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 4679999864 4 3 45 3567999999999999999998 3 57999999999999999999999887654
No 33
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.5e-51 Score=417.94 Aligned_cols=293 Identities=18% Similarity=0.201 Sum_probs=249.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCC-----eEEEEecC--c--hhhhhhhhcccCCCCce-eeecCCCcHHhhcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVS-----ALHLYDVM--N--VKGVAADLSHCNTPSQV-LDFTGPEELASALKG 161 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~-----ev~L~Di~--~--~~g~~~dL~~~~~~~~v-~~i~~t~d~~~al~~ 161 (412)
.+.+|+|.||||.+|+++.+.++...+++ .|+|+|+. . ++|+++||.|+..+..- ..++ +++|+ +++|
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~~~e-a~~d 199 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TDLDV-AFKD 199 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-ECCHH-HhCC
Confidence 35799999999999999999999865543 69999994 3 78999999999754311 1233 45665 8999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC--CeEEEEEcCCCCCcHHHHHHHHHHhC-CCCCCCeEec
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP--DAFIHIISNPVNSTVPIAAEVLKQKG-VYDPKKLFGV 238 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p--~aiviv~TNPv~~~~pI~t~i~~~~s-g~~~~kviGl 238 (412)
||+||+++|.||+|||+|.|++..|.+|++++++.|.+++| ++++|++|||+| ++++++++.+ ++|++||||+
T Consensus 200 aDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD----~~t~i~~k~apgiP~~rVig~ 275 (452)
T cd05295 200 AHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLN----LKTSILIKYAPSIPRKNIIAV 275 (452)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHH----HHHHHHHHHcCCCCHHHEEEe
Confidence 99999999999999999999999999999999999999998 999999999999 5677777777 9999999999
Q ss_pred cccchHHHHHHHHHHcCCCCCCe-eeeEEcccCCcccccccccCCC----------------CCCC-ChHHH--HHHHHH
Q 015172 239 TTLDVVRANTFVAQKKNLKLIDV-DVPVVGGHAGITILPLLSKTMP----------------SVSF-TDEEV--GDLTVR 298 (412)
Q Consensus 239 t~Lds~R~~~~la~~l~v~~~~V-~~~ViG~hgg~~~vp~~S~~~p----------------~~~~-~~~~~--~~l~~~ 298 (412)
+.||++|++++||+++|+++++| +++|||+|| +++||+||+++. ..++ .+++| +++.+.
T Consensus 276 gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG-~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~ 354 (452)
T cd05295 276 ARLQENRAKALLARKLNVNSAGIKDVIVWGNIG-GNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVAT 354 (452)
T ss_pred cchHHHHHHHHHHHHhCcCHHHceeeEEEEccC-CceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHH
Confidence 77889999999999999999999 568999997 699999999843 2222 34443 678888
Q ss_pred HhhccchhhhcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecC-CC--CCCCceeeeEEEcCCceEEeecCC
Q 015172 299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES-NL--TELPFFASRVKLGRNGVESLISSD 375 (412)
Q Consensus 299 v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~-~i--~~~~~~s~Pv~igk~Gv~~v~~~~ 375 (412)
++++++ ++| |+|+||+|.|+++++++|+.|.+ ++.++||+++.. +| +++.|||+||++|++|++.+.+
T Consensus 355 v~~rg~---~rk---gsT~~siA~A~~~iv~ail~~t~-~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~-- 425 (452)
T cd05295 355 LKSLSS---SLN---HEAAISPAHAIATTLSYWYHGSP-PGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTD-- 425 (452)
T ss_pred HHHHHH---hcc---CChHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeC--
Confidence 998887 444 89999999999999999999853 247999986544 34 5778999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 015172 376 LQGLTEYEQKALEALKPELKASIEKG 401 (412)
Q Consensus 376 l~~Lse~E~~~L~~sa~~L~~~i~~~ 401 (412)
++|+++|+++|++|+++|.++.+.+
T Consensus 426 -L~L~e~E~~kL~~S~~eL~~E~~~~ 450 (452)
T cd05295 426 -LELSEILREVLKRITSDLIQEKLVA 450 (452)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999887664
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=8e-49 Score=380.25 Aligned_cols=255 Identities=32% Similarity=0.485 Sum_probs=228.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC--CCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSP--LVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~g--l~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|+||||+|.||.++++.++..+ ...+|+|+|+++ +++.++|+.|.........++.++|++++++|||+||+++|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899988999999999999999 778999999987 678889999876443122455677866689999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHHH
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVA 251 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~la 251 (412)
|+++|++|.|++.+|++++++++++++++||++|+|++|||+| ++++++++.+|+|++||||+|.||+.|+++++|
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la 156 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA 156 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 678888999999999999995599999999999
Q ss_pred HHcCCCCCCeeeeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhcccCCCchhhhHHHHHHHHHHHH
Q 015172 252 QKKNLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESS 331 (412)
Q Consensus 252 ~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~K~g~gst~~s~A~a~~~ii~ai 331 (412)
+++++++++|+++|+|+|| ++++|+||+++ +|.++++++++|
T Consensus 157 ~~l~v~~~~v~~~v~G~hg-~~~~~~~s~~~-------------------------------------~a~~~~~ii~ai 198 (263)
T cd00650 157 EKLGVDPDDVKVYILGEHG-GSQVPDWSTVR-------------------------------------IATSIADLIRSL 198 (263)
T ss_pred HHhCCCccceEEEEEEcCC-CceEeccccch-------------------------------------HHHHHHHHHHHH
Confidence 9999999999999999998 58999999854 688999999999
Q ss_pred HhccCCCCCeEEeeeecCC-C--CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHHHHHHH
Q 015172 332 LRALDGDGDVYECVFVESN-L--TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASI 398 (412)
Q Consensus 332 l~~~~g~~~v~~~s~v~~~-i--~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~L~~~i 398 (412)
+.+ ++.++|++....+ | +++.|||+||+||++|++++++ ++|+++|+++|+++++.++..+
T Consensus 199 ~~~---~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~---~~l~~~e~~~l~~s~~~~~~~~ 262 (263)
T cd00650 199 LND---EGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIE---VGLTDFELEKLQKSADTLKKEL 262 (263)
T ss_pred HcC---CCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEec---CCCCHHHHHHHHHHHHHHHHHh
Confidence 998 4678999876554 4 4778999999999999999999 6899999999999999998765
No 35
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=1.5e-39 Score=302.75 Aligned_cols=301 Identities=24% Similarity=0.367 Sum_probs=258.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-------CCCCeEEEEecCc----hhhhhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-------PLVSALHLYDVMN----VKGVAADLSHCNTPSQVLDFTGPEELASALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-------gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~ 161 (412)
+.+|.|.||+|.+|.++.+.++.. ++ .++|.|+.+ ++|..++|.++..|. +..+..++|..++|+|
T Consensus 4 pirVlVtGAAGqI~ysll~~ia~G~vfG~dQPi--iL~lLdi~~~~~~LegV~mELqD~a~Pl-L~~Vvattd~~~afkd 80 (332)
T KOG1496|consen 4 PIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPI--ILHLLDIPPMMSVLEGVKMELQDCALPL-LKGVVATTDEVEAFKD 80 (332)
T ss_pred ceEEEeecccchhhHHHHHHHcCceeecCCCce--EEEeeCCchHHHHHHHHHHHHHhhhhhH-HHhhhcccChhhhhcc
Confidence 468999999999999999999853 44 899999987 689999999998875 3444567888899999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
.|+.|...+.||++||+|.|++..|.+|++.-...+++|+ |+..++|+.||.+....|+. +.+..+|.++|-.+|.
T Consensus 81 v~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTR 157 (332)
T KOG1496|consen 81 VDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTR 157 (332)
T ss_pred CcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhh
Confidence 9999999999999999999999999999999999999999 99999999999998776654 5566799999999999
Q ss_pred cchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCCC--------CCC-CChHHH--HHHHHHHhhccchhhhc
Q 015172 241 LDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTMP--------SVS-FTDEEV--GDLTVRIQNAGTEVVEA 309 (412)
Q Consensus 241 Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~p--------~~~-~~~~~~--~~l~~~v~~~g~eii~~ 309 (412)
||.+|+...||.++|++.++|...+||+||..+++|+..+++. ..+ ++++.| .++++.||++|..+|++
T Consensus 158 LDhNRA~~QlA~klgv~~~~VkNviIWGNHSsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 158 LDHNRALAQLALKLGVPVSDVKNVIIWGNHSSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred hchhhHHHHHHHhhCCchhhcceeEEecccccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 9999999999999999999998665555555899999998863 222 577777 68999999999999997
Q ss_pred ccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecC---CCCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHH
Q 015172 310 KAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVES---NLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKA 386 (412)
Q Consensus 310 K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~---~i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~ 386 (412)
+. -|+.+|.|.++++.++.|+.+.+ +...++.++... ++|++..||+||.+ ++|-|++++ .++++++-+++
T Consensus 238 rk--~SSA~SaA~aacDhi~dw~~gTp-eG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVq--gl~iddf~r~k 311 (332)
T KOG1496|consen 238 RK--LSSAMSAAKAACDHIRDWWFGTP-EGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQ--GLPIDDFSREK 311 (332)
T ss_pred hh--hhhhhhHHHhHhhhhhheecCCC-CccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEc--CcchhHHHHHh
Confidence 62 58999999999999999999975 223333333322 25788899999999 889999998 47999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015172 387 LEALKPELKASIEKGVAFA 405 (412)
Q Consensus 387 L~~sa~~L~~~i~~~~~~~ 405 (412)
++.++++|.++.+.+...+
T Consensus 312 m~~t~~EL~eEkd~a~~~l 330 (332)
T KOG1496|consen 312 MDLTAKELKEEKDLAYSCL 330 (332)
T ss_pred hhhhHHHHHHhHHHHHHhh
Confidence 9999999999998887655
No 36
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=100.00 E-value=2.7e-32 Score=249.30 Aligned_cols=159 Identities=35% Similarity=0.489 Sum_probs=142.6
Q ss_pred cccchHHHHHHHHHHcCCCCCCeeeeEEcccCCcccccccccCC----CC-------CCCChHHHHHHHHHHhhccchhh
Q 015172 239 TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITILPLLSKTM----PS-------VSFTDEEVGDLTVRIQNAGTEVV 307 (412)
Q Consensus 239 t~Lds~R~~~~la~~l~v~~~~V~~~ViG~hgg~~~vp~~S~~~----p~-------~~~~~~~~~~l~~~v~~~g~eii 307 (412)
|.||++|++++||+++|++|++|+++|||||| +++||+||+++ |. ..++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg-~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHG-DSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSS-TTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCC-cceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 67999999999999999999999999999997 69999999986 32 34677889999999999999999
Q ss_pred hcccCCCchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C--CCC-CceeeeEEEcCCceEEeecCCCCCCCHHH
Q 015172 308 EAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN-L--TEL-PFFASRVKLGRNGVESLISSDLQGLTEYE 383 (412)
Q Consensus 308 ~~K~g~gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i--~~~-~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E 383 (412)
++|. |+++||+|+++++++++|+.+. +.++|++.+..+ | ++. +|||+||+||++|++++++ +++|+++|
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ail~~~---~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~--~~~L~~~E 152 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVEAILKDE---RRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVE--DLPLSEEE 152 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHHHHHTTH---TEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEEC--SBSSTHHH
T ss_pred eecc--ccCcCCHHHHHHHHHHHHhhcc---cccccceeccccccCcccccceecceEEEcCCeeEEEeC--CCCCCHHH
Confidence 9994 7999999999999999999995 679999865443 4 343 8999999999999999998 36899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 015172 384 QKALEALKPELKASIEKGVAFA 405 (412)
Q Consensus 384 ~~~L~~sa~~L~~~i~~~~~~~ 405 (412)
+++|++|++.|++.++++++|+
T Consensus 153 ~~~l~~sa~~l~~~i~~~~~f~ 174 (174)
T PF02866_consen 153 QEKLKESAKELKKEIEKGLEFV 174 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999885
No 37
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=99.97 E-value=1.4e-31 Score=236.77 Aligned_cols=139 Identities=40% Similarity=0.662 Sum_probs=126.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+||||+|.||+++|+.|+++++++||+|+|+++ ++|+++||.|..+...........+|+ +++|||+||+++|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~-~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYE-ALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGG-GGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccc-ccccccEEEEeccc
Confidence 799999998999999999999999999999999996 799999999987554333333346776 79999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG 237 (412)
|++||++|.|++..|++++++++++|.+++|+++++++|||+| ++++++++.+++||+|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999 7799999999999999998
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.96 E-value=2.4e-27 Score=244.73 Aligned_cols=280 Identities=15% Similarity=0.139 Sum_probs=194.7
Q ss_pred CceEEEEcCCCCcHHHHHH--HHH-hCCCCC-eEEEEecCc--hh-hhhhhhcccC--CCCceeeecCCCcHHhhcCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLAL--LIK-MSPLVS-ALHLYDVMN--VK-GVAADLSHCN--TPSQVLDFTGPEELASALKGVN 163 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~--~l~-~~gl~~-ev~L~Di~~--~~-g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aD 163 (412)
++||+|||| |+||.+.++ .++ ..++.+ ||+|+|+++ ++ +... +.+.. ..... .+..|+|+.++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~-~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASA-KITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCe-EEEEECCHHHHhCCCC
Confidence 479999998 999999887 555 345554 999999997 22 2222 33321 11222 4556789777999999
Q ss_pred EEEEcCCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHH
Q 015172 164 VVVIPAGVP-RKPG--------------MTRDDL--------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIA 220 (412)
Q Consensus 164 iVIiaag~p-~k~g--------------~~r~dl--------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~ 220 (412)
+||++++++ ++++ ++|.|+ ..+|++++++++++|+++||+||+|++|||++ ++
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv 153 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN 153 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence 999999987 5556 667788 89999999999999999999999999999999 77
Q ss_pred HHHHHHhCCCCCCCeEecc--ccchHHHHHHHHHHcCCCCCCeeeeEEcccC----------Cccccccccc--------
Q 015172 221 AEVLKQKGVYDPKKLFGVT--TLDVVRANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPLLSK-------- 280 (412)
Q Consensus 221 t~i~~~~sg~~~~kviGlt--~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~~S~-------- 280 (412)
++.++ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.|-|| |.+.+|.+-.
T Consensus 154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~ 227 (431)
T PRK15076 154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTR 227 (431)
T ss_pred HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCch
Confidence 88777 47889999997 37765 78999999999999999999987 5566663211
Q ss_pred -CC-------------CC-------C--C-C----ChHHHHHHH----HHHh------hccchhh-hcccCCCchh--hh
Q 015172 281 -TM-------------PS-------V--S-F----TDEEVGDLT----VRIQ------NAGTEVV-EAKAGAGSAT--LS 319 (412)
Q Consensus 281 -~~-------------p~-------~--~-~----~~~~~~~l~----~~v~------~~g~eii-~~K~g~gst~--~s 319 (412)
.. |. . . + .++..+++. +..+ ....+.+ +... |.+. -.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 305 (431)
T PRK15076 228 CQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEIKR 305 (431)
T ss_pred hcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCcccccc
Confidence 00 11 0 0 1 122222111 1111 0001111 1111 2111 01
Q ss_pred HHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHHH
Q 015172 320 MAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPE 393 (412)
Q Consensus 320 ~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~~ 393 (412)
-+-.+++++++|.+| ++.++.+.+.+.+ +|++.++-+||.++++|+..+.- .+|++..+.+++.-+..
T Consensus 306 ~~e~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~---g~lP~~~~~l~~~~~~~ 377 (431)
T PRK15076 306 SREYASTIIEAIETG---EPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV---GDLPPQLAALNRTNINV 377 (431)
T ss_pred chHHHHHHHHHHhcC---CceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec---CCCCHHHHHHHHHHHHH
Confidence 234689999999988 3556666665554 46777899999999999999866 68999888877664443
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.94 E-value=4.4e-25 Score=227.00 Aligned_cols=277 Identities=19% Similarity=0.260 Sum_probs=191.1
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHhC-C-C-CCeEEEEecC-c-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCc
Q 015172 94 FKVAVLGAAGGIGQ-PLALLIKMS-P-L-VSALHLYDVM-N-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVN 163 (412)
Q Consensus 94 ~KV~VIGAaG~vG~-~iA~~l~~~-g-l-~~ev~L~Di~-~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aD 163 (412)
|||+|||| |+.-. .+...++.. . + .++|+|+|++ + .. ..+..+..... ..+ .+..|+|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~-~v~~t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPI-KVHLTTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCe-EEEEeCCHHHHhCCCC
Confidence 69999999 87633 233344442 2 3 3799999999 5 11 12233333221 123 3456889999999999
Q ss_pred EEEEcCCCCCCCCCchhhH--------------------HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172 164 VVVIPAGVPRKPGMTRDDL--------------------FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV 223 (412)
Q Consensus 164 iVIiaag~p~k~g~~r~dl--------------------~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i 223 (412)
+||+++++++.+++++++. ..+|++++++++++|+++|||||+|++|||++ +++++
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a 153 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA 153 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence 9999999988887777663 56889999999999999999999999999999 78998
Q ss_pred HHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-ccC---------Cccccccccc-------------
Q 015172 224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-GHA---------GITILPLLSK------------- 280 (412)
Q Consensus 224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-~hg---------g~~~vp~~S~------------- 280 (412)
+++.+ +.||||+|+.+ .|+++++|+.+|+++++|+++|+| +|- |.+.+|.+-.
T Consensus 154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~ 229 (419)
T cd05296 154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL 229 (419)
T ss_pred HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence 88875 88999999874 899999999999999999999999 552 5667772110
Q ss_pred ----------CCCCCC----C-ChHHHH------------------HHHHHHhhcc----chhhhcccCCCchhhhHHHH
Q 015172 281 ----------TMPSVS----F-TDEEVG------------------DLTVRIQNAG----TEVVEAKAGAGSATLSMAYA 323 (412)
Q Consensus 281 ----------~~p~~~----~-~~~~~~------------------~l~~~v~~~g----~eii~~K~g~gst~~s~A~a 323 (412)
..|..- + .++-++ ++.+..++.. .+-+..+ +.+.|+ -.
T Consensus 230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r---~g~~y~--e~ 304 (419)
T cd05296 230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKR---GGAGYS--EA 304 (419)
T ss_pred hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhh---cCcchH--HH
Confidence 012110 0 111111 1111111110 0111112 112233 47
Q ss_pred HHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172 324 AARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392 (412)
Q Consensus 324 ~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~ 392 (412)
+++++++|+.+ ++.++.+.+.+.+ +|++.++-+||.++++|+..+-- .+|++....+++.-..
T Consensus 305 a~~ii~ai~~~---~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v---g~lP~~~~~l~~~~~~ 371 (419)
T cd05296 305 ALALISAIYND---KGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV---GPLPPAILGLIQQVKA 371 (419)
T ss_pred HHHHHHHHhcC---CCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC---CCCCHHHHHHHHHHHH
Confidence 88999999987 3455555555544 46677899999999999999755 6899888777665433
No 40
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.94 E-value=8.7e-25 Score=225.19 Aligned_cols=278 Identities=19% Similarity=0.231 Sum_probs=182.3
Q ss_pred ceEEEEcCCCCc-HHHHHHHHHhCC--C-CCeEEEEecCc-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172 94 FKVAVLGAAGGI-GQPLALLIKMSP--L-VSALHLYDVMN-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~v-G~~iA~~l~~~g--l-~~ev~L~Di~~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi 164 (412)
|||+|||| |+. .-.+...++... + .+||+|+|+++ .. ..+..+.+... ..+ .+..|+|+++||+|||+
T Consensus 1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g-~~~-~v~~ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVG-ADI-KFEKTMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhC-CCe-EEEEeCCHHHHhCCCCE
Confidence 69999999 865 112333444433 3 37999999997 11 22333333221 123 34568999999999999
Q ss_pred EEEcCCC------------CCCCCCc--------hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHH
Q 015172 165 VVIPAGV------------PRKPGMT--------RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVL 224 (412)
Q Consensus 165 VIiaag~------------p~k~g~~--------r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~ 224 (412)
||.+..+ |.+.|.. -.-...+|++++++++++|+++||+||+|++|||++ ++|+++
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a~ 153 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEAV 153 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHHH
Confidence 9998543 2233321 123356999999999999999999999999999999 789989
Q ss_pred HHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEc-ccC---------Ccccccccc---------------
Q 015172 225 KQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVG-GHA---------GITILPLLS--------------- 279 (412)
Q Consensus 225 ~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG-~hg---------g~~~vp~~S--------------- 279 (412)
++. .|+.||||+|+. +.|+++++|+.+|+++++|+++++| +|+ |.+..|.+-
T Consensus 154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~~~s~~~~~G~~l~p~l~~~~~~~~~~~~~~~~ 230 (425)
T cd05197 154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGIWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENP 230 (425)
T ss_pred HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeEeeEeEEECCeecHHHHHHHHhccCcccccccc
Confidence 888 478999999877 8999999999999999999999999 785 222222110
Q ss_pred ---------c-------CCCCCC---C--C----hH-------------H---H-HHHHHHHhhc---cch-hhhcccCC
Q 015172 280 ---------K-------TMPSVS---F--T----DE-------------E---V-GDLTVRIQNA---GTE-VVEAKAGA 313 (412)
Q Consensus 280 ---------~-------~~p~~~---~--~----~~-------------~---~-~~l~~~v~~~---g~e-ii~~K~g~ 313 (412)
. ..|... | . ++ + + .++.+..+.. ... -...+
T Consensus 231 ~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~r--- 307 (425)
T cd05197 231 FVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVELIKR--- 307 (425)
T ss_pred ccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhhhhc---
Confidence 0 001110 0 0 00 0 0 0111111110 000 00001
Q ss_pred CchhhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHH
Q 015172 314 GSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEA 389 (412)
Q Consensus 314 gst~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~ 389 (412)
+...+ +-.+++++++|++|. +.++.+.+.+.+ +|++.++-+||.++++|+..+-- .+|++.-..+++.
T Consensus 308 ~~~~~--~e~a~~ii~ai~~~~---~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v---g~lp~~~~~Li~~ 379 (425)
T cd05197 308 GGRKY--SEAAIPLIRALLNDN---GARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV---GPLDRFVKGLLRQ 379 (425)
T ss_pred CCccc--HHHHHHHHHHHHcCC---CeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc---CCCCHHHHHHHHH
Confidence 12223 347889999999983 556655555544 46777999999999999999765 6788877666655
Q ss_pred HHH
Q 015172 390 LKP 392 (412)
Q Consensus 390 sa~ 392 (412)
-..
T Consensus 380 ~~~ 382 (425)
T cd05197 380 RKM 382 (425)
T ss_pred HHH
Confidence 433
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.93 E-value=6.3e-24 Score=219.25 Aligned_cols=284 Identities=18% Similarity=0.251 Sum_probs=188.2
Q ss_pred ceEEEEcCCCCc-HHHHHHHHHhC--CC-CCeEEEEecCc-hh----hhhhhhcccCCCCceeeecCCCcHHhhcCCCcE
Q 015172 94 FKVAVLGAAGGI-GQPLALLIKMS--PL-VSALHLYDVMN-VK----GVAADLSHCNTPSQVLDFTGPEELASALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~v-G~~iA~~l~~~--gl-~~ev~L~Di~~-~~----g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDi 164 (412)
|||+|||| |+. +-.+...++.. .+ .++|+|+||++ .. ..+..+.+.. ...+ .+..|+|+++|++|||+
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~-~v~~Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEI-KFVYTTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCe-EEEEECCHHHHhCCCCE
Confidence 79999999 875 12233445444 23 37999999998 22 2233333322 1223 35568999999999999
Q ss_pred EEEcCCC------------CCCCCC---c-----hhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHH
Q 015172 165 VVIPAGV------------PRKPGM---T-----RDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVL 224 (412)
Q Consensus 165 VIiaag~------------p~k~g~---~-----r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~ 224 (412)
||.+..+ |.|.|. + -.-...+|++++.+++++|+++|||||+|++|||++ ++++++
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~~ 153 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEAL 153 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHH
Confidence 9998543 223332 1 123467999999999999999999999999999999 778888
Q ss_pred HHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC-----------Cccccccccc---C---------
Q 015172 225 KQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA-----------GITILPLLSK---T--------- 281 (412)
Q Consensus 225 ~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg-----------g~~~vp~~S~---~--------- 281 (412)
++. +|+.||||+|+-.. -++..+|+.+|+++++|+..+.|-|| |.+.+|.+-. .
T Consensus 154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~ 230 (437)
T cd05298 154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD 230 (437)
T ss_pred HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence 887 78899999998654 46888999999999999999999876 4445553221 0
Q ss_pred -------------------------CCCC--C--CChHH-HHH--------------HHHHHhhccchhhhcccCCCchh
Q 015172 282 -------------------------MPSV--S--FTDEE-VGD--------------LTVRIQNAGTEVVEAKAGAGSAT 317 (412)
Q Consensus 282 -------------------------~p~~--~--~~~~~-~~~--------------l~~~v~~~g~eii~~K~g~gst~ 317 (412)
.|.. . +..++ .++ ..+++.+.-.++...+.-.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~ 310 (437)
T cd05298 231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF 310 (437)
T ss_pred ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence 0000 0 00000 011 11111000000000000000011
Q ss_pred h--hHHHHHHHHHHHHHhccCCCCCeEEeeeecCC-C---CCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHH
Q 015172 318 L--SMAYAAARFVESSLRALDGDGDVYECVFVESN-L---TELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALK 391 (412)
Q Consensus 318 ~--s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~-i---~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa 391 (412)
. .-|.++++++++|+.| ++.+++++..+.+ | +++.++++||+||++|+.++.- .+|++....+++.-+
T Consensus 311 ~~~~ya~~a~~ii~aI~~d---~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v---g~lP~~~~~l~~~~~ 384 (437)
T cd05298 311 HVDVHGEYIVDLAASIAYN---TKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV---GKIPTFYKGLMEQQV 384 (437)
T ss_pred hccchHHHHHHHHHHHHcC---CCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc---CCCCHHHHHHHHHHH
Confidence 1 1466899999999998 5689999877654 3 5677999999999999999865 689998887766544
Q ss_pred HH
Q 015172 392 PE 393 (412)
Q Consensus 392 ~~ 393 (412)
..
T Consensus 385 ~~ 386 (437)
T cd05298 385 AY 386 (437)
T ss_pred HH
Confidence 43
No 42
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.92 E-value=1.7e-23 Score=215.96 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=192.9
Q ss_pred ceEEEEcCCCCcHHHHHH--HHHhC-CCC-CeEEEEecCc--hhhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEE
Q 015172 94 FKVAVLGAAGGIGQPLAL--LIKMS-PLV-SALHLYDVMN--VKGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVV 165 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~--~l~~~-gl~-~ev~L~Di~~--~~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiV 165 (412)
+||+|||| |.+|.+.++ .++.. .+. .+|+|+|+++ .+....++.+.. .... ..+..|+|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~-~~I~~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAP-LKIEATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCC-eEEEEeCCHHHHhcCCCEE
Confidence 58999998 999999887 35433 333 3999999997 333333333221 1111 2455678988899999999
Q ss_pred EEcCCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172 166 VIPAGVPRKPGMTR----------------------DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV 223 (412)
Q Consensus 166 Iiaag~p~k~g~~r----------------------~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i 223 (412)
|++++.+..++.++ .....+|..++.++++.++++||++|++++|||++ ++|++
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~ 154 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA 154 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence 99998777666555 34567899999999999999999999999999999 78999
Q ss_pred HHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCCCCeeeeEEcccC----------Cccccccccc-----------CC
Q 015172 224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA----------GITILPLLSK-----------TM 282 (412)
Q Consensus 224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~~~ViG~hg----------g~~~vp~~S~-----------~~ 282 (412)
+++.++ .|+||+|+- +.|+++.+|+.+++++++|+++++|-|| |.+.+|.+-. ..
T Consensus 155 ~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~ 230 (423)
T cd05297 155 LNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS 230 (423)
T ss_pred HHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence 988854 799999865 7889999999999999999999999987 5666663221 11
Q ss_pred -------------CCC------C------CChHHHHH------------------HHHHHhhccc-hh--hhcccCCCch
Q 015172 283 -------------PSV------S------FTDEEVGD------------------LTVRIQNAGT-EV--VEAKAGAGSA 316 (412)
Q Consensus 283 -------------p~~------~------~~~~~~~~------------------l~~~v~~~g~-ei--i~~K~g~gst 316 (412)
|.. + ..++.... +......... +. .+.. +..
T Consensus 231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 307 (423)
T cd05297 231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELD---PVK 307 (423)
T ss_pred cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhccchhcchhcc---ccc
Confidence 110 0 01011110 1111110000 00 0000 111
Q ss_pred hhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHHHHHHH
Q 015172 317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392 (412)
Q Consensus 317 ~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L~~sa~ 392 (412)
.+ +-.+++++++|.++ ++.++.+.+-+.+ +|++.++-+||.|+++|+..+-- .+|++....+++.-..
T Consensus 308 ~~--~e~a~~ii~ai~~~---~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~---g~lp~~~~~l~~~~~~ 379 (423)
T cd05297 308 RS--GEYASPIIEALVTG---KPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI---GPLPPQLAALIRPRIN 379 (423)
T ss_pred cc--hHHHHHHHHHHhcC---CceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc---CCCCHHHHHHHHHHHH
Confidence 12 23588999999987 4566666655554 46777999999999999999865 7898887777665444
Q ss_pred H
Q 015172 393 E 393 (412)
Q Consensus 393 ~ 393 (412)
.
T Consensus 380 ~ 380 (423)
T cd05297 380 V 380 (423)
T ss_pred H
Confidence 3
No 43
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.88 E-value=2e-21 Score=197.76 Aligned_cols=291 Identities=20% Similarity=0.259 Sum_probs=191.8
Q ss_pred CceEEEEcCCCCcHHHHHH--HHHhC-CC-CCeEEEEecCc-hhh----hhhhhccc-CCCCceeeecCCCcHHhhcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLAL--LIKMS-PL-VSALHLYDVMN-VKG----VAADLSHC-NTPSQVLDFTGPEELASALKGV 162 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~--~l~~~-gl-~~ev~L~Di~~-~~g----~~~dL~~~-~~~~~v~~i~~t~d~~~al~~a 162 (412)
..||+|||| |+.+.+--. .|... .+ ..+|.|+|+++ ... .+..+.+. +.+ + .+..|+|+++||+||
T Consensus 3 ~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~-kv~~ttd~~eAl~gA 78 (442)
T COG1486 3 KFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--V-KVEATTDRREALEGA 78 (442)
T ss_pred cceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--e-EEEEecCHHHHhcCC
Confidence 469999999 988766543 23332 22 36999999997 222 22333332 222 3 345678999999999
Q ss_pred cEEEEcCCC------------CCCCCCchh--------hHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHH
Q 015172 163 NVVVIPAGV------------PRKPGMTRD--------DLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAE 222 (412)
Q Consensus 163 DiVIiaag~------------p~k~g~~r~--------dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~ 222 (412)
|+||.+..+ |.|.|-.+. -.-.++++++-++++.|+++||+||++++|||+. ++|+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vTe 154 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVTE 154 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHHH
Confidence 999998532 444443221 2246899999999999999999999999999998 7899
Q ss_pred HHHHhCCCCCCCeEeccccchHHHHHHHHHHcCCCC-CCeeeeEEcccC----------CcccccccccC----------
Q 015172 223 VLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKL-IDVDVPVVGGHA----------GITILPLLSKT---------- 281 (412)
Q Consensus 223 i~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v~~-~~V~~~ViG~hg----------g~~~vp~~S~~---------- 281 (412)
.+.+. +|.-|+||+|+... -....+|+.|++++ ++++..+.|-|| |.+.+|.+...
T Consensus 155 Av~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~ 231 (442)
T COG1486 155 AVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP 231 (442)
T ss_pred HHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence 98887 56449999998653 56889999999975 999999999887 33333322110
Q ss_pred ---------------------CCCCC----------------------CChHHHHHHHHHHhhccch-hhhccc----CC
Q 015172 282 ---------------------MPSVS----------------------FTDEEVGDLTVRIQNAGTE-VVEAKA----GA 313 (412)
Q Consensus 282 ---------------------~p~~~----------------------~~~~~~~~l~~~v~~~g~e-ii~~K~----g~ 313 (412)
.|... ...+++.+..++....-.+ .+..|. ..
T Consensus 232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~ 311 (442)
T COG1486 232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR 311 (442)
T ss_pred ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence 01000 0111211111111000000 000000 00
Q ss_pred Cch--hhhHHHHHHHHHHHHHhccCCCCCeEEeeeecCC----CCCCCceeeeEEEcCCceEEeecCCCCCCCHHHHHHH
Q 015172 314 GSA--TLSMAYAAARFVESSLRALDGDGDVYECVFVESN----LTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKAL 387 (412)
Q Consensus 314 gst--~~s~A~a~~~ii~ail~~~~g~~~v~~~s~v~~~----i~~~~~~s~Pv~igk~Gv~~v~~~~l~~Lse~E~~~L 387 (412)
+.+ .++ -.+++|++||++| ++.++.+.+-+++ +|++.++-+||+++++|+..+.. ..|++.-+..+
T Consensus 312 ~~~~~~~~--e~a~~ii~Ai~~~---~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~---g~lP~~~~~l~ 383 (442)
T COG1486 312 IGAGKYSS--EYASNIINAIENN---KPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV---GDLPEFVKGLM 383 (442)
T ss_pred CCcccccH--HHHHHHHHHHhcC---CceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc---CCCCHHHHHHH
Confidence 112 333 3788999999998 4566666655554 57778999999999999999887 89999999988
Q ss_pred HHHHHHHHHHHHHHH
Q 015172 388 EALKPELKASIEKGV 402 (412)
Q Consensus 388 ~~sa~~L~~~i~~~~ 402 (412)
+..+..-+-.++.++
T Consensus 384 ~~~i~~e~l~veA~~ 398 (442)
T COG1486 384 HTNINVEELTVEAAL 398 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 877665554454443
No 44
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.74 E-value=2.9e-17 Score=150.90 Aligned_cols=152 Identities=21% Similarity=0.285 Sum_probs=106.0
Q ss_pred eEEEEcCCCCcHHHHHH--HHHhC-CC-CCeEEEEecCc-h----hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEE
Q 015172 95 KVAVLGAAGGIGQPLAL--LIKMS-PL-VSALHLYDVMN-V----KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVV 165 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~--~l~~~-gl-~~ev~L~Di~~-~----~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiV 165 (412)
||+|||| |++-.+... .+... .+ .+||+|+|+|+ . ...+..+..... ..+ .+..|+|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~-~~~-~v~~ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAG-ADL-KVEATTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCT-TSS-EEEEESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcC-CCe-EEEEeCCHHHHhCCCCEE
Confidence 8999999 988666432 33333 33 25999999997 1 233333433321 223 245679999999999999
Q ss_pred EEcCCC------------CCCCCCch----------hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHH
Q 015172 166 VIPAGV------------PRKPGMTR----------DDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEV 223 (412)
Q Consensus 166 Iiaag~------------p~k~g~~r----------~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i 223 (412)
|.+..+ |.+.|..- .-...++++++.+++++|+++|||||++|+|||+. ++++.
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a 153 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA 153 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence 998653 55555321 23457999999999999999999999999999998 77888
Q ss_pred HHHhCCCCCCCeEeccccchHHHHHHHHHHcCC
Q 015172 224 LKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNL 256 (412)
Q Consensus 224 ~~~~sg~~~~kviGlt~Lds~R~~~~la~~l~v 256 (412)
+.+. ++..|++|+|+-. .-+...+|+.||+
T Consensus 154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~ 183 (183)
T PF02056_consen 154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM 183 (183)
T ss_dssp HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence 8877 5668999999865 3567888888874
No 45
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.74 E-value=6.4e-18 Score=184.68 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=123.8
Q ss_pred CChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhh
Q 015172 61 LNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAA 135 (412)
Q Consensus 61 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~ 135 (412)
...|++++||++||..++.|+........+++.+||+|||| |.||.+||+.++..|+ +|+|+|+++ +...+.
T Consensus 281 ~~s~~a~~l~~~ff~~r~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~ 357 (714)
T TIGR02437 281 AKTSEAKALIGLFLNDQYVKGKAKKADKIAKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAA 357 (714)
T ss_pred hCCHHHHHHHHHHhhhHhhcCCCCCCCCCccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHH
Confidence 45688999999999988887654211356778899999998 9999999999999999 999999986 122222
Q ss_pred hhccc----C--C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCe
Q 015172 136 DLSHC----N--T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDA 204 (412)
Q Consensus 136 dL~~~----~--~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a 204 (412)
++.+. . + ...+..+++++|++ ++++||+||++ +.||+++++++..+++++| |++
T Consensus 358 ~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~ 422 (714)
T TIGR02437 358 KLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFDNVDIVVEA--------------VVENPKVKAAVLAEVEQHVREDA 422 (714)
T ss_pred HHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcCCCEEEEc--------------CcccHHHHHHHHHHHHhhCCCCc
Confidence 22211 1 1 12245677788996 79999999999 7999999999999999999 799
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 205 FIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 205 iviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
|+ +||+++ +|| ++++... -+|+||+|++.
T Consensus 423 il--asnTS~--l~i-~~ia~~~--~~p~r~ig~Hf 451 (714)
T TIGR02437 423 IL--ASNTST--ISI-SLLAKAL--KRPENFCGMHF 451 (714)
T ss_pred EE--EECCCC--CCH-HHHHhhc--CCcccEEEEec
Confidence 98 999999 666 8888776 57999999964
No 46
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.73 E-value=9e-18 Score=183.99 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=121.4
Q ss_pred ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhh
Q 015172 62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAAD 136 (412)
Q Consensus 62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~d 136 (412)
..|++++||++||..++.|+... ...+++..||+|||| |.||.+||+.++..|+ +|+|+|+++ +.....+
T Consensus 306 ~s~~a~al~~~f~~~~~~~~~~~--~~~~~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 306 MTFESKALIGLFHGQTDCKKNKF--GKPQRPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred CCHHHHHHHHHHHHHHHccCCCC--CCCCCcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHH
Confidence 56889999999999888876542 234567789999998 9999999999999999 999999987 1222222
Q ss_pred hccc-----C-C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeE
Q 015172 137 LSHC-----N-T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAF 205 (412)
Q Consensus 137 L~~~-----~-~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~ai 205 (412)
..+. . + ...+..+++++||+ ++++||+||++ +.||+++++++..+++++| |++|
T Consensus 381 ~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEA--------------v~E~l~~K~~vf~~l~~~~~~~~i 445 (737)
T TIGR02441 381 GLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEA--------------VFEDLSLKHKVIKEVEAVVPPHCI 445 (737)
T ss_pred HHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhh--------------ccccHHHHHHHHHHHHhhCCCCcE
Confidence 2221 1 1 12345677788996 79999999999 7999999999999999999 7999
Q ss_pred EEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 206 viv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
+ +||+++ +|| ++++... -+|+||+|++
T Consensus 446 l--asNTSs--l~i-~~la~~~--~~p~r~ig~H 472 (737)
T TIGR02441 446 I--ASNTSA--LPI-KDIAAVS--SRPEKVIGMH 472 (737)
T ss_pred E--EEcCCC--CCH-HHHHhhc--CCccceEEEe
Confidence 8 999999 566 8888776 5789999985
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.67 E-value=1.4e-16 Score=157.16 Aligned_cols=123 Identities=23% Similarity=0.327 Sum_probs=101.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhhh----cccC------CCCceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAADL----SHCN------TPSQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~dL----~~~~------~~~~v~~i~~t~d~~~ 157 (412)
.+||+|||| |.||++||+.++..|+ +|+|+|+++ ++....+. .... ....+..++.++|+.
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~- 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA- 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-
Confidence 579999998 9999999999999778 999999996 12222222 2111 123456777889997
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi 236 (412)
++++||+||++ +.||+++++++..++++++ |++|+ +||+|+ +|| ++++... .+|+||+
T Consensus 79 ~l~~~DlVIEA--------------v~E~levK~~vf~~l~~~~~~~aIl--ASNTSs--l~i-t~ia~~~--~rper~i 137 (307)
T COG1250 79 ALKDADLVIEA--------------VVEDLELKKQVFAELEALAKPDAIL--ASNTSS--LSI-TELAEAL--KRPERFI 137 (307)
T ss_pred HhccCCEEEEe--------------ccccHHHHHHHHHHHHhhcCCCcEE--eeccCC--CCH-HHHHHHh--CCchhEE
Confidence 89999999999 7999999999999999999 89999 999999 666 8888887 7899999
Q ss_pred eccc
Q 015172 237 GVTT 240 (412)
Q Consensus 237 Glt~ 240 (412)
|++.
T Consensus 138 G~HF 141 (307)
T COG1250 138 GLHF 141 (307)
T ss_pred EEec
Confidence 9963
No 48
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.66 E-value=1.6e-15 Score=165.79 Aligned_cols=155 Identities=21% Similarity=0.354 Sum_probs=121.3
Q ss_pred cCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc-----hhhh
Q 015172 60 FLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN-----VKGV 133 (412)
Q Consensus 60 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~-----~~g~ 133 (412)
-...|.+++|++.|+..++.|+...+ ...+++.+||+|||| |.||.++|+.++. .|+ +|+|+|+++ +...
T Consensus 272 ~~~s~~~~~~~~~f~~~~~~~~~~~~-~~~~~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~ 347 (699)
T TIGR02440 272 LVMTPESAALRSIFFATTEMKKETGS-DATPAKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKY 347 (699)
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCC-CCCcccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHH
Confidence 34568889999999998888766332 345567789999998 9999999999985 799 999999987 1112
Q ss_pred hhhhccc-----C-CC----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-C
Q 015172 134 AADLSHC-----N-TP----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-P 202 (412)
Q Consensus 134 ~~dL~~~-----~-~~----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p 202 (412)
..+..+. . .. ..+..++.++|++ ++++||+||++ +.||+++++++..+++++| |
T Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEa--------------v~E~l~~K~~v~~~l~~~~~~ 412 (699)
T TIGR02440 348 AWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFKDVDIVIEA--------------VFEDLALKHQMVKDIEQECAA 412 (699)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-HhccCCEEEEe--------------ccccHHHHHHHHHHHHhhCCC
Confidence 2221111 1 11 1234667788996 79999999999 7999999999999999999 7
Q ss_pred CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 203 ~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
++|+ +||++. +|+ ++++... -+|+||+|++.
T Consensus 413 ~~il--asnTS~--l~i-~~la~~~--~~p~r~~g~Hf 443 (699)
T TIGR02440 413 HTIF--ASNTSS--LPI-GQIAAAA--SRPENVIGLHY 443 (699)
T ss_pred CcEE--EeCCCC--CCH-HHHHHhc--CCcccEEEEec
Confidence 8988 999999 566 8888776 67999999975
No 49
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.65 E-value=5e-16 Score=170.07 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=120.0
Q ss_pred ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhh
Q 015172 62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAAD 136 (412)
Q Consensus 62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~d 136 (412)
..+.++++++.|+.+++.|+........+++..||+|||| |.||.+||+.++..|+ +|+|+|+++ . .....+
T Consensus 282 ~s~d~~egi~aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~ 358 (715)
T PRK11730 282 KTNVARALVGIFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAK 358 (715)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHH
Confidence 4567788889999988887654211245566789999998 9999999999999999 999999987 1 112212
Q ss_pred hc----ccC--C----CCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeE
Q 015172 137 LS----HCN--T----PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAF 205 (412)
Q Consensus 137 L~----~~~--~----~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~ai 205 (412)
.. ... . ...+..++.++||+ ++++||+||++ +.||+++++++..+++++| |++|
T Consensus 359 ~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~l~~K~~vf~~l~~~~~~~~i 423 (715)
T PRK11730 359 LLNKQVERGKIDGAKMAGVLSSIRPTLDYA-GFERVDVVVEA--------------VVENPKVKAAVLAEVEQKVREDTI 423 (715)
T ss_pred HHHHHHHcCCCChhhHHHHHhCeEEeCCHH-HhcCCCEEEec--------------ccCcHHHHHHHHHHHHhhCCCCcE
Confidence 11 111 1 12245667788996 79999999999 7999999999999999999 7998
Q ss_pred EEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 206 viv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
+ +||++. +|| ++++... -+|+||+|++.
T Consensus 424 l--asNTSs--l~i-~~la~~~--~~p~r~~g~Hf 451 (715)
T PRK11730 424 L--ASNTST--ISI-SLLAKAL--KRPENFCGMHF 451 (715)
T ss_pred E--EEcCCC--CCH-HHHHhhc--CCCccEEEEec
Confidence 8 999999 666 8888777 57999999863
No 50
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.63 E-value=1.3e-15 Score=166.71 Aligned_cols=153 Identities=23% Similarity=0.377 Sum_probs=119.9
Q ss_pred ChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCc-----hhhhhh
Q 015172 62 NKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMN-----VKGVAA 135 (412)
Q Consensus 62 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~-----~~g~~~ 135 (412)
..+.++++++.|+..++.|+...+ ..++++.+||+|||| |.||.+||+.++ ..|+ +|+|+|+++ +.....
T Consensus 279 ~s~~~~~~~~aF~~~~~~~~~~~~-~~~~~~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~ 354 (708)
T PRK11154 279 MTPESAALRSIFFATTEMKKDTGS-DAKPRPVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSW 354 (708)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCC-CCCCCcccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHH
Confidence 467788998999988777665332 345667889999998 999999999999 7799 999999986 122222
Q ss_pred hhccc-----C-CC----CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCe
Q 015172 136 DLSHC-----N-TP----SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDA 204 (412)
Q Consensus 136 dL~~~-----~-~~----~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~a 204 (412)
+..+. . +. ..+..+++++|++ ++++||+||++ +.||+++++++..++++++ |++
T Consensus 355 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEa--------------v~E~~~~K~~v~~~le~~~~~~~ 419 (708)
T PRK11154 355 DLLDKKVKRRHLKPSERDKQMALISGTTDYR-GFKHADVVIEA--------------VFEDLALKQQMVAEVEQNCAPHT 419 (708)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-HhccCCEEeec--------------ccccHHHHHHHHHHHHhhCCCCc
Confidence 22211 1 11 2234667788995 79999999999 7999999999999999999 899
Q ss_pred EEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 205 FIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 205 iviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
|+ +||++. +|| ++++... -+|+||+|++.
T Consensus 420 il--asnTS~--l~i-~~la~~~--~~p~r~ig~Hf 448 (708)
T PRK11154 420 IF--ASNTSS--LPI-GQIAAAA--ARPEQVIGLHY 448 (708)
T ss_pred EE--EECCCC--CCH-HHHHHhc--CcccceEEEec
Confidence 99 999999 566 8888776 57899999963
No 51
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.56 E-value=2.5e-15 Score=138.29 Aligned_cols=122 Identities=21% Similarity=0.372 Sum_probs=89.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhhhhhcc----cC-C-----CCceeeecCCCcHHhhc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVAADLSH----CN-T-----PSQVLDFTGPEELASAL 159 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~~dL~~----~~-~-----~~~v~~i~~t~d~~~al 159 (412)
||+|||| |.||.++|..++..|+ +|+|+|.++ ......+..+ .. . ...+..++.++|+++ +
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~-~ 76 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEE-A 76 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGG-G
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHH-H
Confidence 7999998 9999999999999999 999999987 1222222111 11 1 122445566789985 5
Q ss_pred CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV 238 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl 238 (412)
.+||+||++ +.|++++++++..+++++| |+++| +||++. +++ ++++... -+|+|++|+
T Consensus 77 ~~adlViEa--------------i~E~l~~K~~~~~~l~~~~~~~~il--asnTSs--l~i-~~la~~~--~~p~R~ig~ 135 (180)
T PF02737_consen 77 VDADLVIEA--------------IPEDLELKQELFAELDEICPPDTIL--ASNTSS--LSI-SELAAAL--SRPERFIGM 135 (180)
T ss_dssp CTESEEEE---------------S-SSHHHHHHHHHHHHCCS-TTSEE--EE--SS--S-H-HHHHTTS--STGGGEEEE
T ss_pred hhhheehhh--------------ccccHHHHHHHHHHHHHHhCCCceE--EecCCC--CCH-HHHHhcc--CcCceEEEE
Confidence 599999999 6899999999999999999 89998 999998 556 8887776 479999999
Q ss_pred ccc
Q 015172 239 TTL 241 (412)
Q Consensus 239 t~L 241 (412)
+..
T Consensus 136 Hf~ 138 (180)
T PF02737_consen 136 HFF 138 (180)
T ss_dssp EE-
T ss_pred ecc
Confidence 863
No 52
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=5.2e-13 Score=131.44 Aligned_cols=125 Identities=14% Similarity=0.286 Sum_probs=96.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhhhhhc----ccC-C-----CCceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVAADLS----HCN-T-----PSQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~~dL~----~~~-~-----~~~v~~i~~t~d~~~ 157 (412)
+.||+|||+ |.||.++|..++..|+ +|+|||+++ . .....+.. +.. . ...+..++.++|++
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~- 80 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLG- 80 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHH-
Confidence 458999998 9999999999999999 999999987 1 11111111 111 1 01234556678995
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC--PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv 235 (412)
++++||+||++ +.||.++++++..+++++| |++++ +||++. +|+ +.++... .+|+|+
T Consensus 81 ~~~~~d~ViEa--------------v~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~--~~~-~~la~~~--~~~~r~ 139 (286)
T PRK07819 81 DFADRQLVIEA--------------VVEDEAVKTEIFAELDKVVTDPDAVL--ASNTSS--IPI-MKLAAAT--KRPGRV 139 (286)
T ss_pred HhCCCCEEEEe--------------cccCHHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHhhc--CCCccE
Confidence 79999999999 7899999999999999997 58888 999998 455 6666555 578999
Q ss_pred Eeccccc
Q 015172 236 FGVTTLD 242 (412)
Q Consensus 236 iGlt~Ld 242 (412)
+|++..+
T Consensus 140 ~g~hf~~ 146 (286)
T PRK07819 140 LGLHFFN 146 (286)
T ss_pred EEEecCC
Confidence 9997654
No 53
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=9.5e-13 Score=131.42 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=95.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h----hhhh---h-hhcccC-C-CCceeeecCCCcHHhhcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V----KGVA---A-DLSHCN-T-PSQVLDFTGPEELASALK 160 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~----~g~~---~-dL~~~~-~-~~~v~~i~~t~d~~~al~ 160 (412)
..+||+|||+ |.||.++|..++..|+ +|+|+|+++ . .... . .+.... . ......++.+++++++++
T Consensus 6 ~i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~ 82 (321)
T PRK07066 6 DIKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVA 82 (321)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhc
Confidence 4578999998 9999999999999999 999999986 1 1111 0 111111 1 111234455678988899
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
+||+||++ +.||+++++++..++++++ |+++| +||++. +++ ++++... -+|+|++|++
T Consensus 83 ~aDlViEa--------------vpE~l~vK~~lf~~l~~~~~~~aIl--aSnTS~--l~~-s~la~~~--~~p~R~~g~H 141 (321)
T PRK07066 83 DADFIQES--------------APEREALKLELHERISRAAKPDAII--ASSTSG--LLP-TDFYARA--THPERCVVGH 141 (321)
T ss_pred CCCEEEEC--------------CcCCHHHHHHHHHHHHHhCCCCeEE--EECCCc--cCH-HHHHHhc--CCcccEEEEe
Confidence 99999999 6899999999999999999 68866 999997 334 7777666 5789999986
Q ss_pred c
Q 015172 240 T 240 (412)
Q Consensus 240 ~ 240 (412)
.
T Consensus 142 f 142 (321)
T PRK07066 142 P 142 (321)
T ss_pred c
Confidence 5
No 54
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.41 E-value=8.9e-14 Score=129.75 Aligned_cols=131 Identities=17% Similarity=0.329 Sum_probs=102.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-h-----hhhhhhhcccC------CC--------CceeeecC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-V-----KGVAADLSHCN------TP--------SQVLDFTG 151 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~-----~g~~~dL~~~~------~~--------~~v~~i~~ 151 (412)
.++.|+|+|| |.||++||+.++..|+ +|.|+|.++ . ++....+.+.. .+ ..+.++.-
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4568999998 9999999999999999 999999997 1 22222222211 01 12344555
Q ss_pred CCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCC
Q 015172 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVY 230 (412)
Q Consensus 152 t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~ 230 (412)
++|.+++++|+|+||++ +.||+++++++.+++++.| +++++ +||+++. .+ +.++... .
T Consensus 87 ~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~il--~tNTSSl--~l-t~ia~~~--~ 145 (298)
T KOG2304|consen 87 STNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSSTIL--ATNTSSL--SL-TDIASAT--Q 145 (298)
T ss_pred cCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccceEE--eecccce--eH-HHHHhhc--c
Confidence 78899999999999999 8999999999999999999 68988 9999984 33 7777776 7
Q ss_pred CCCCeEeccc---cchHHH
Q 015172 231 DPKKLFGVTT---LDVVRA 246 (412)
Q Consensus 231 ~~~kviGlt~---Lds~R~ 246 (412)
+|.+|.|++. .+.+++
T Consensus 146 ~~srf~GlHFfNPvPvMKL 164 (298)
T KOG2304|consen 146 RPSRFAGLHFFNPVPVMKL 164 (298)
T ss_pred ChhhhceeeccCCchhHHH
Confidence 8999999974 444443
No 55
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.35 E-value=2.8e-12 Score=135.62 Aligned_cols=126 Identities=21% Similarity=0.297 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhccc----C--C----CCceeeecCCCcHH
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHC----N--T----PSQVLDFTGPEELA 156 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~----~--~----~~~v~~i~~t~d~~ 156 (412)
+.+||+|||+ |.||.++|..++..|+ +|+++|+++. .....++.+. . + ...+..++.+++++
T Consensus 6 ~i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~ 82 (507)
T PRK08268 6 SIATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALA 82 (507)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH
Confidence 4578999998 9999999999999999 9999999871 1222222211 1 0 11233455678886
Q ss_pred hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172 157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv 235 (412)
++++||+||++ +.+|..+++.+..++++.+ |++++ +||+++ +++ ++++... .+|+|+
T Consensus 83 -~~~~aDlViEa--------------v~E~~~vK~~vf~~l~~~~~~~ail--asntSt--l~i-~~la~~~--~~p~r~ 140 (507)
T PRK08268 83 -DLADCDLVVEA--------------IVERLDVKQALFAQLEAIVSPDCIL--ATNTSS--LSI-TAIAAAL--KHPERV 140 (507)
T ss_pred -HhCCCCEEEEc--------------CcccHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHhhc--CCcccE
Confidence 68999999999 7899999999999999998 78888 899998 555 6776665 568999
Q ss_pred Eeccccc
Q 015172 236 FGVTTLD 242 (412)
Q Consensus 236 iGlt~Ld 242 (412)
+|++.++
T Consensus 141 ~G~hff~ 147 (507)
T PRK08268 141 AGLHFFN 147 (507)
T ss_pred EEEeecC
Confidence 9987655
No 56
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.31 E-value=5.6e-12 Score=133.11 Aligned_cols=126 Identities=21% Similarity=0.317 Sum_probs=96.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhh----hcccC-C-----CCceeeecCCCcHH
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAAD----LSHCN-T-----PSQVLDFTGPEELA 156 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~d----L~~~~-~-----~~~v~~i~~t~d~~ 156 (412)
+.+||+|||+ |.||.++|..++..|+ +|++||+++. .....+ +.... . ...+..++.++|++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~ 80 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLH 80 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHH
Confidence 3578999998 9999999999999999 9999999861 111111 11111 0 01233455678886
Q ss_pred hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172 157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv 235 (412)
++++||+||++ +.++..+++++..++++++ |++++ +||+++ +++ ++++... -+|+++
T Consensus 81 -~l~~aDlVIEa--------------v~E~~~vK~~vf~~l~~~~~~~~Il--asnTSt--l~i-~~iA~~~--~~p~r~ 138 (503)
T TIGR02279 81 -ALADAGLVIEA--------------IVENLEVKKALFAQLEELCPADTII--ASNTSS--LSI-TAIAAGL--ARPERV 138 (503)
T ss_pred -HhCCCCEEEEc--------------CcCcHHHHHHHHHHHHhhCCCCeEE--EECCCC--CCH-HHHHHhc--Ccccce
Confidence 68999999999 7899999999999999999 67776 999998 445 6777766 568899
Q ss_pred Eeccccc
Q 015172 236 FGVTTLD 242 (412)
Q Consensus 236 iGlt~Ld 242 (412)
+|++.++
T Consensus 139 ~G~HFf~ 145 (503)
T TIGR02279 139 AGLHFFN 145 (503)
T ss_pred EEEeccC
Confidence 9987655
No 57
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.25 E-value=2.2e-11 Score=119.69 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhh----hhccc-----CC-C-----CceeeecCCCcHH
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAA----DLSHC-----NT-P-----SQVLDFTGPEELA 156 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~----dL~~~-----~~-~-----~~v~~i~~t~d~~ 156 (412)
.+||+|||+ |.||.++|..++..|. +|+++|+++ ....+. .+.+. .. . .....++.++|++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ 79 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLA 79 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHH
Confidence 469999998 9999999999999998 999999986 111111 11110 11 0 0123444568898
Q ss_pred hhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCe
Q 015172 157 SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 157 ~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kv 235 (412)
+++++||+||++ +.++.++++++.+++++++ ++++| ++|++.. ++ ++++... -+|+|+
T Consensus 80 ~a~~~aDlViea--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~sntSt~--~~-~~~~~~~--~~~~r~ 138 (287)
T PRK08293 80 EAVKDADLVIEA--------------VPEDPEIKGDFYEELAKVAPEKTIF--ATNSSTL--LP-SQFAEAT--GRPEKF 138 (287)
T ss_pred HHhcCCCEEEEe--------------ccCCHHHHHHHHHHHHhhCCCCCEE--EECcccC--CH-HHHHhhc--CCcccE
Confidence 889999999999 5788999999999999988 57766 7898873 34 6666654 467899
Q ss_pred Eeccc
Q 015172 236 FGVTT 240 (412)
Q Consensus 236 iGlt~ 240 (412)
+|++.
T Consensus 139 vg~Hf 143 (287)
T PRK08293 139 LALHF 143 (287)
T ss_pred EEEcC
Confidence 99864
No 58
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.15 E-value=1.4e-10 Score=114.13 Aligned_cols=125 Identities=16% Similarity=0.317 Sum_probs=90.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hh---hhhhh-c----ccCCC-----CceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KG---VAADL-S----HCNTP-----SQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g---~~~dL-~----~~~~~-----~~v~~i~~t~d~~~ 157 (412)
.+||+|||+ |.||.++|..++..|+ +|++||+++. .. ...+. . ....+ ..+..++.+++++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~- 79 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE- 79 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-
Confidence 468999998 9999999999999998 9999999861 11 11111 0 11111 0112344567886
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi 236 (412)
++++||+||++ +.++..+++.+.+.+.+++ |++++ +||+++ +++ ++++... .+|++++
T Consensus 80 ~~~~aD~Viea--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~--~~~-s~la~~~--~~~~r~~ 138 (292)
T PRK07530 80 DLADCDLVIEA--------------ATEDETVKRKIFAQLCPVLKPEAIL--ATNTSS--ISI-TRLASAT--DRPERFI 138 (292)
T ss_pred HhcCCCEEEEc--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC--CCH-HHHHhhc--CCcccEE
Confidence 68999999999 5677888899999999988 67877 689988 444 5666654 4678999
Q ss_pred eccccc
Q 015172 237 GVTTLD 242 (412)
Q Consensus 237 Glt~Ld 242 (412)
|++.++
T Consensus 139 g~h~~~ 144 (292)
T PRK07530 139 GIHFMN 144 (292)
T ss_pred EeeccC
Confidence 987665
No 59
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.15 E-value=1.4e-10 Score=113.66 Aligned_cols=123 Identities=21% Similarity=0.405 Sum_probs=90.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhh--hh----hhcccC-CC-----CceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGV--AA----DLSHCN-TP-----SQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~--~~----dL~~~~-~~-----~~v~~i~~t~d~~~ 157 (412)
++||+|||+ |.||.++|..++..|+ +|+++|+++. .+. .. ++.+.. .. ..+..+..++|++
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~- 78 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD- 78 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-
Confidence 468999998 9999999999999998 9999999872 111 11 111111 00 0112344567886
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi 236 (412)
++++||+||++ +.++..+++++.+++++++ |++++ +||+++ +++ ++++... -+|++++
T Consensus 79 ~~~~aDlVi~a--------------v~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~--~~~-~~la~~~--~~~~r~i 137 (282)
T PRK05808 79 DLKDADLVIEA--------------ATENMDLKKKIFAQLDEIAKPEAIL--ATNTSS--LSI-TELAAAT--KRPDKVI 137 (282)
T ss_pred HhccCCeeeec--------------ccccHHHHHHHHHHHHhhCCCCcEE--EECCCC--CCH-HHHHHhh--CCCcceE
Confidence 68999999999 6788999999999999998 68877 899988 444 5665555 3577899
Q ss_pred eccc
Q 015172 237 GVTT 240 (412)
Q Consensus 237 Glt~ 240 (412)
|+..
T Consensus 138 g~h~ 141 (282)
T PRK05808 138 GMHF 141 (282)
T ss_pred Eeec
Confidence 9864
No 60
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.14 E-value=1.8e-10 Score=113.41 Aligned_cols=125 Identities=17% Similarity=0.251 Sum_probs=89.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhh--------h---cccCC--C----CceeeecCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAAD--------L---SHCNT--P----SQVLDFTGPEE 154 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~d--------L---~~~~~--~----~~v~~i~~t~d 154 (412)
.+||+|||+ |.||.++|..++..|. +|+++|+++. .....+ + .+... . .....+..+++
T Consensus 3 i~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~ 79 (291)
T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTS 79 (291)
T ss_pred CcEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCC
Confidence 468999998 9999999999999998 9999999871 111101 1 11110 0 01122344567
Q ss_pred HHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCC
Q 015172 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPK 233 (412)
Q Consensus 155 ~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~ 233 (412)
++ ++++||+||++ +.++.++++++.+++++++ |++++ +||++.. ++ ++++... -+|+
T Consensus 80 ~~-~~~~aDlViea--------------v~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~--~~-~~la~~~--~~~~ 137 (291)
T PRK06035 80 YE-SLSDADFIVEA--------------VPEKLDLKRKVFAELERNVSPETII--ASNTSGI--MI-AEIATAL--ERKD 137 (291)
T ss_pred HH-HhCCCCEEEEc--------------CcCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC--CH-HHHHhhc--CCcc
Confidence 74 79999999999 5778899999999999998 67877 7888873 34 6666655 4588
Q ss_pred CeEeccccc
Q 015172 234 KLFGVTTLD 242 (412)
Q Consensus 234 kviGlt~Ld 242 (412)
|++|++..+
T Consensus 138 r~ig~hf~~ 146 (291)
T PRK06035 138 RFIGMHWFN 146 (291)
T ss_pred cEEEEecCC
Confidence 999996543
No 61
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.11 E-value=2.5e-10 Score=112.25 Aligned_cols=124 Identities=16% Similarity=0.280 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-----hhhhhhhcccC-----C-C----CceeeecCCCcHHhh
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-----KGVAADLSHCN-----T-P----SQVLDFTGPEELASA 158 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-----~g~~~dL~~~~-----~-~----~~v~~i~~t~d~~~a 158 (412)
+||+|||+ |.||.++|..++..|. +|+++|+++. .....++.... . . .....++.+++++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 58999998 9999999999999998 9999999861 11111111110 0 0 011234456788788
Q ss_pred cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237 (412)
Q Consensus 159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG 237 (412)
+++||+||++ +.++..+++.+..++++++ |++++ ++|+++ +++ +++.... -.|.+++|
T Consensus 79 ~~~aD~Vi~a--------------vpe~~~~k~~~~~~l~~~~~~~~il--~~~tSt--~~~-~~l~~~~--~~~~r~~g 137 (288)
T PRK09260 79 VADADLVIEA--------------VPEKLELKKAVFETADAHAPAECYI--ATNTST--MSP-TEIASFT--KRPERVIA 137 (288)
T ss_pred hcCCCEEEEe--------------ccCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC--CCH-HHHHhhc--CCcccEEE
Confidence 9999999999 5677888999999999988 67776 788887 445 5655554 45788889
Q ss_pred cccc
Q 015172 238 VTTL 241 (412)
Q Consensus 238 lt~L 241 (412)
++.+
T Consensus 138 ~h~~ 141 (288)
T PRK09260 138 MHFF 141 (288)
T ss_pred EecC
Confidence 8653
No 62
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.10 E-value=3.4e-10 Score=111.62 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=90.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-h----hh----hhhcccC--CC----CceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-G----VA----ADLSHCN--TP----SQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g----~~----~dL~~~~--~~----~~v~~i~~t~d~~~ 157 (412)
.+||+|||+ |.||.++|..++..|. +|+++|.++.. . .. .++.+.. .. ..+..++.+++++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 79 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE- 79 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-
Confidence 468999998 9999999999999998 99999998611 1 11 1121111 00 1112234456775
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi 236 (412)
++++||+||++ +.++..+++.+..++.+++ |+++| +||+++. ++ +++.... -++.+++
T Consensus 80 ~~~~aD~Viea--------------v~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i--~~-~~l~~~~--~~~~r~~ 138 (295)
T PLN02545 80 ELRDADFIIEA--------------IVESEDLKKKLFSELDRICKPSAIL--ASNTSSI--SI-TRLASAT--QRPQQVI 138 (295)
T ss_pred HhCCCCEEEEc--------------CccCHHHHHHHHHHHHhhCCCCcEE--EECCCCC--CH-HHHHhhc--CCCcceE
Confidence 79999999999 6888999999999999988 67776 7999883 44 5555544 3568899
Q ss_pred eccccch
Q 015172 237 GVTTLDV 243 (412)
Q Consensus 237 Glt~Lds 243 (412)
|++..+.
T Consensus 139 g~h~~~p 145 (295)
T PLN02545 139 GMHFMNP 145 (295)
T ss_pred EEeccCC
Confidence 9866553
No 63
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.95 E-value=1.4e-09 Score=108.46 Aligned_cols=114 Identities=14% Similarity=0.168 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhCCCCCeEEEEecCch------------hhhhhhhcc----cC--C----CCceeeecCCC--cHHhhcC
Q 015172 105 IGQPLALLIKMSPLVSALHLYDVMNV------------KGVAADLSH----CN--T----PSQVLDFTGPE--ELASALK 160 (412)
Q Consensus 105 vG~~iA~~l~~~gl~~ev~L~Di~~~------------~g~~~dL~~----~~--~----~~~v~~i~~t~--d~~~al~ 160 (412)
||.+||..++..|+ +|+|+|+++. .....++.+ .. . ...+..++.++ |+.++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~ 78 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALA 78 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence 78999999999999 9999999861 111111111 11 1 01223444443 3667899
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
+||+||++ +.||..+++++..++++.+ |++|+ +||++. +++ ++++... .+|+|++|++
T Consensus 79 ~aD~ViEa--------------v~E~~~~K~~~f~~l~~~~~~~~il--aSntS~--~~~-~~la~~~--~~p~r~~g~H 137 (314)
T PRK08269 79 DADLVFEA--------------VPEVLDAKREALRWLGRHVDADAII--ASTTST--FLV-TDLQRHV--AHPERFLNAH 137 (314)
T ss_pred cCCEEEEC--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcccc--CCH-HHHHhhc--CCcccEEEEe
Confidence 99999999 7899999999999999999 78888 999998 445 7777766 4789999986
Q ss_pred cc
Q 015172 240 TL 241 (412)
Q Consensus 240 ~L 241 (412)
..
T Consensus 138 f~ 139 (314)
T PRK08269 138 WL 139 (314)
T ss_pred cC
Confidence 54
No 64
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=7.2e-09 Score=104.66 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=84.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-----hhhcccCC------CCceeeecCCCcHHhhcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNT------PSQVLDFTGPEELASALKGV 162 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-----~dL~~~~~------~~~v~~i~~t~d~~~al~~a 162 (412)
|||+|+|. |+||...+..+++.|+ +|+.+|+++.+-.. ..+.+... ...-.++..|+||+++++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~a 77 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDA 77 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcC
Confidence 79999998 9999999999999998 99999999722111 01111110 01112366789999999999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC-eEEEEE-cCCCCCc
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD-AFIHII-SNPVNST 216 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-aiviv~-TNPv~~~ 216 (412)
|+++++.|+|.++.. ..++..+..++++|.++.+. +++++- |-|+...
T Consensus 78 dv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~ 127 (414)
T COG1004 78 DVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTT 127 (414)
T ss_pred CEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCch
Confidence 999999999988743 34578999999999998865 444333 6788743
No 65
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.92 E-value=4.9e-09 Score=103.98 Aligned_cols=124 Identities=21% Similarity=0.357 Sum_probs=85.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhh---cccCCC-----CceeeecCCCcHHhhcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADL---SHCNTP-----SQVLDFTGPEELASALKGV 162 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL---~~~~~~-----~~v~~i~~t~d~~~al~~a 162 (412)
.+||+|||+ |.||..+|..++..|+ +|+++|.++. ......+ .....+ .....+..++|+++++++|
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a 80 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGA 80 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccC
Confidence 578999998 9999999999999998 9999999761 1111111 110000 0011233456787779999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccc
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTT 240 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~ 240 (412)
|+||++ +.++...++++..+++.++ ++++| +||++.. ++ +++.... ..+.+|+|++.
T Consensus 81 DlVi~a--------------v~~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~--~~-~~l~~~~--~~~~~~ig~h~ 138 (311)
T PRK06130 81 DLVIEA--------------VPEKLELKRDVFARLDGLCDPDTIF--ATNTSGL--PI-TAIAQAV--TRPERFVGTHF 138 (311)
T ss_pred CEEEEe--------------ccCcHHHHHHHHHHHHHhCCCCcEE--EECCCCC--CH-HHHHhhc--CCcccEEEEcc
Confidence 999999 5666778888888898887 56665 6888773 33 5665554 34678888853
No 66
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.91 E-value=5.9e-09 Score=110.17 Aligned_cols=123 Identities=18% Similarity=0.255 Sum_probs=86.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhh--------hccc-CCC-CceeeecCCCcHHhhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAAD--------LSHC-NTP-SQVLDFTGPEELASALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~d--------L~~~-~~~-~~v~~i~~t~d~~~al~~ 161 (412)
.+||+|||+ |.||.++|..++..|+ +|++||+++... ...+ +... ..+ .....+..++++++++++
T Consensus 4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~ 80 (495)
T PRK07531 4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG 80 (495)
T ss_pred cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC
Confidence 469999998 9999999999999999 999999986211 1101 0000 000 011123446788888999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
||+||++ +.++..+++.+..++.+++ |+++| +||+++. ++ +++.... -++.++++.+
T Consensus 81 aD~Viea--------------vpe~~~vk~~l~~~l~~~~~~~~iI--~SsTsgi--~~-s~l~~~~--~~~~r~~~~h 138 (495)
T PRK07531 81 ADWIQES--------------VPERLDLKRRVLAEIDAAARPDALI--GSSTSGF--LP-SDLQEGM--THPERLFVAH 138 (495)
T ss_pred CCEEEEc--------------CcCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC--CH-HHHHhhc--CCcceEEEEe
Confidence 9999999 6788899999999999888 56654 8999983 33 5555444 3467777764
No 67
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.84 E-value=1.1e-08 Score=101.55 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=86.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhh----h----hhcccCC------CCceeeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVA----A----DLSHCNT------PSQVLDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~----~----dL~~~~~------~~~v~~i~~t~d~~~ 157 (412)
++||+|||+ |.||.++|..++..|+ +|++||.++. ...+ . .+.+... ...+..+..++|+++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~ 78 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLAD 78 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHH
Confidence 579999998 9999999999999998 9999999861 1110 0 1212110 011122344678888
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi 236 (412)
++++||+||++ +.++..+++.+..++.+.++ +.++ .||++.. + +.+++... -.+.+++
T Consensus 79 a~~~ad~Vi~a--------------vpe~~~~k~~~~~~l~~~~~~~~ii--~ssts~~--~-~~~la~~~--~~~~~~~ 137 (308)
T PRK06129 79 AVADADYVQES--------------APENLELKRALFAELDALAPPHAIL--ASSTSAL--L-ASAFTEHL--AGRERCL 137 (308)
T ss_pred hhCCCCEEEEC--------------CcCCHHHHHHHHHHHHHhCCCcceE--EEeCCCC--C-HHHHHHhc--CCcccEE
Confidence 89999999999 46667888888888988885 5444 6888763 2 35666655 3477888
Q ss_pred ecccc
Q 015172 237 GVTTL 241 (412)
Q Consensus 237 Glt~L 241 (412)
|.+..
T Consensus 138 ~~hp~ 142 (308)
T PRK06129 138 VAHPI 142 (308)
T ss_pred EEecC
Confidence 88654
No 68
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.72 E-value=2.3e-08 Score=92.50 Aligned_cols=127 Identities=22% Similarity=0.324 Sum_probs=77.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-----------Cce--eeecCCCcHHhhcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-----------SQV--LDFTGPEELASALK 160 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-----------~~v--~~i~~t~d~~~al~ 160 (412)
|||+|+|. |++|..+|..++..|+ +|+-+|+++.+ ...+.....+ ..+ ..+..++|++++++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~--v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~ 75 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEK--VEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIK 75 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHH--HHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHH--HHHHhhccccccccchhhhhccccccccchhhhhhhhhhh
Confidence 79999998 9999999999999999 99999999721 1111111100 001 23445688988899
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCCCcHHHHHHHHHHhCCCC
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVNSTVPIAAEVLKQKGVYD 231 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~~~~pI~t~i~~~~sg~~ 231 (412)
+||++|++.+.|.+++. .-|+..+.+.++.|.++. ++.+|++= |=|...+--++..++.+.++..
T Consensus 76 ~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~ 142 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK 142 (185)
T ss_dssp H-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT
T ss_pred ccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc
Confidence 99999999999976643 234566777777777776 55655444 5566643324445666665443
No 69
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.58 E-value=7.7e-08 Score=96.06 Aligned_cols=111 Identities=14% Similarity=0.197 Sum_probs=84.2
Q ss_pred cHHHHHHHHHhCCCCCeEEEEecCch--h-h--hhhh----------hcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 105 IGQPLALLIKMSPLVSALHLYDVMNV--K-G--VAAD----------LSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 105 vG~~iA~~l~~~gl~~ev~L~Di~~~--~-g--~~~d----------L~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
||++||..+.+.|+ +++|+|.+.. . + .... +...........+.++.||. .++++|+||++
T Consensus 1 MG~gia~~~~~~~i--~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~-~~~~~dmviea- 76 (380)
T KOG1683|consen 1 MGAGIAIVFILAGI--RTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYT-GFANADMVIEA- 76 (380)
T ss_pred CcchHHHHHHHcCC--cEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhcccccccc-cccccceeccc-
Confidence 78999999999999 9999999961 1 1 1110 11111112233456788997 79999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
+++|+++++++..+|++.| |++|+ .||++. +++ .++.... -+|++++|++
T Consensus 77 -------------v~edl~Lk~~l~~~le~v~~~~~i~--gsntSs--~~~-~~isa~l--d~~e~vvg~h 127 (380)
T KOG1683|consen 77 -------------VFEDLELKHELFKSLEKVEPPKCIR--GSNTSS--LDI-NVISAGL--DRPEMVVGMH 127 (380)
T ss_pred -------------hhhhHHHHHHHHHHHHhhcCCccee--eecccc--CCh-HHHhhcc--Cchhhhcccc
Confidence 8999999999999999999 78988 999988 455 6665544 6799999995
No 70
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.54 E-value=3.6e-07 Score=96.05 Aligned_cols=121 Identities=14% Similarity=0.161 Sum_probs=79.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhh-----hhhcccCCCC-----ceeeecCCCcHHhhcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNTPS-----QVLDFTGPEELASALKGV 162 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~-----~dL~~~~~~~-----~v~~i~~t~d~~~al~~a 162 (412)
+|||+|||+ |+||..+|..|+..|.--+|+.+|+++.+-.. ..+.+..... .-..++.|+|+++++++|
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a 79 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA 79 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence 589999998 99999999999988532289999998722111 0111111000 011245578888789999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEEE-cCCCCC
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHII-SNPVNS 215 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv~-TNPv~~ 215 (412)
|+||++.++|.+++....+ -.-++..+.+.++.|.++.+ +.+|++= |-|..+
T Consensus 80 dvi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 80 DIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred CEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 9999999999754321001 12356778888999988884 4444222 677774
No 71
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.51 E-value=2.1e-06 Score=81.22 Aligned_cols=128 Identities=23% Similarity=0.222 Sum_probs=76.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccC--CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCN--TPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~--~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|||++|.||..++..++..|. +|.++|.++. .....++.+.. ...... +..+ +..++++++|+||++.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~-~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIK-VTGA-DNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCce-EEEe-ChHHHHhcCCEEEEEC
Confidence 6899998349999999999999997 9999998762 22222222110 011111 1122 3345799999999995
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCc-------H----HHHHHHHHHhCCCCC-CCeEe
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNST-------V----PIAAEVLKQKGVYDP-KKLFG 237 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~-------~----pI~t~i~~~~sg~~~-~kviG 237 (412)
. .....++++++....++.+||-++||.+.- + --.++.+++. +|+ .+|+.
T Consensus 77 p----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~--~p~~~~VVk 138 (219)
T TIGR01915 77 P----------------WDHVLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAAL--LPETSRVVA 138 (219)
T ss_pred C----------------HHHHHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHh--CCCCCeEee
Confidence 2 122344444554444456788889998720 0 0012445555 566 77876
Q ss_pred c-cccch
Q 015172 238 V-TTLDV 243 (412)
Q Consensus 238 l-t~Lds 243 (412)
. .++..
T Consensus 139 a~~~~~a 145 (219)
T TIGR01915 139 AFHNLSA 145 (219)
T ss_pred ccccCCH
Confidence 6 55553
No 72
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.47 E-value=3.6e-07 Score=82.13 Aligned_cols=97 Identities=22% Similarity=0.347 Sum_probs=65.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccC---CC-Ccee-eecCCCcHHhhcCCCcEEEEcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCN---TP-SQVL-DFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~---~~-~~v~-~i~~t~d~~~al~~aDiVIiaa 169 (412)
||+|||| |.+|..+|..++.+|. +|.||+.++..-....-.+.. .+ ..+. .+..++|+++++++||+||++.
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV 77 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence 8999998 9999999999999998 999999986211111111111 11 1111 2234689999999999999983
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
| ....+++++++..+. ++.++++++
T Consensus 78 --P--------------s~~~~~~~~~l~~~l~~~~~ii~~~ 103 (157)
T PF01210_consen 78 --P--------------SQAHREVLEQLAPYLKKGQIIISAT 103 (157)
T ss_dssp -----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred --c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence 2 345678888899888 566665544
No 73
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.37 E-value=5.4e-06 Score=82.67 Aligned_cols=117 Identities=22% Similarity=0.403 Sum_probs=83.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc--cC---CCC-ce-eeecCCCcHHhhcCCCcEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH--CN---TPS-QV-LDFTGPEELASALKGVNVV 165 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~--~~---~~~-~v-~~i~~t~d~~~al~~aDiV 165 (412)
++||+|||+ |.-|.++|..|+.+|. +|+||.+++.. +.++.+ .. .+. .+ ..+..++|+++++++||+|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~--~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEI--VAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHH--HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 479999998 9999999999999997 99999998621 122222 21 121 11 1344678999999999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc---CCCCCcHHHHHHHHHHhCCCCCCC
Q 015172 166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS---NPVNSTVPIAAEVLKQKGVYDPKK 234 (412)
Q Consensus 166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T---NPv~~~~pI~t~i~~~~sg~~~~k 234 (412)
|++. | ...++++++++..+. ++.+++.+| +|.+ .-.+++++++. +|.++
T Consensus 76 v~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t--~~l~seii~e~--l~~~~ 128 (329)
T COG0240 76 VIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPET--GRLLSEIIEEE--LPDNP 128 (329)
T ss_pred EEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCC--cchHHHHHHHH--cCCCe
Confidence 9984 3 456677777776555 688888876 3433 23568888887 55555
No 74
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.28 E-value=9.4e-06 Score=83.90 Aligned_cols=122 Identities=22% Similarity=0.320 Sum_probs=77.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC----CC---------ceeeecCCCcHHhhcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT----PS---------QVLDFTGPEELASALK 160 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~----~~---------~v~~i~~t~d~~~al~ 160 (412)
|||+|||. |.||..+|..++..|+ +|+.+|+++.+. .++..... +. ....++.+++++++++
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v--~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKV--DKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIR 75 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHH--HHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHh
Confidence 68999998 9999999999999998 999999986221 11221110 00 0011334567877899
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc-CCCCCcHHHHHHHHHH
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS-NPVNSTVPIAAEVLKQ 226 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T-NPv~~~~pI~t~i~~~ 226 (412)
+||+||++.+.|..+.. .-++..+.+..+.+.++. ++.++++.| -|.....-+...+..+
T Consensus 76 ~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 76 DADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred hCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 99999999988865432 224556666667777665 566665543 3334322333344444
No 75
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.25 E-value=7.3e-06 Score=84.29 Aligned_cols=110 Identities=22% Similarity=0.336 Sum_probs=69.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-------CCC----CceeeecCCCcHHhhcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-------NTP----SQVLDFTGPEELASALKGV 162 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-------~~~----~~v~~i~~t~d~~~al~~a 162 (412)
|||+|||. |.||..+|..++. |+ +|+.+|+++.+- ..+... ... .....++.+++.+++.++|
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv--~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~a 74 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRV--AMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDA 74 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHH--HHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCC
Confidence 68999998 9999999987774 87 999999987221 111111 000 0011244456666778999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN 214 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~ 214 (412)
|+||++.+.|...... ..|+..++++++.|.+..|+.++++- |-|..
T Consensus 75 d~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pg 122 (388)
T PRK15057 75 DYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVG 122 (388)
T ss_pred CEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCc
Confidence 9999998777432221 12456666666666654466655444 45555
No 76
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.23 E-value=6.3e-06 Score=81.77 Aligned_cols=103 Identities=21% Similarity=0.347 Sum_probs=68.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCC-C-Ccee-eecCCCcHHhhcCCCcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNT-P-SQVL-DFTGPEELASALKGVNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~-~-~~v~-~i~~t~d~~~al~~aDiVIi 167 (412)
||||+|||+ |.||..++..|+..|. +|.++|.++. .....+..+... . ..+. ....++++++.+++||+||+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 77 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILV 77 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEE
Confidence 579999998 9999999999999998 9999999752 111111101000 0 0000 12224567667899999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
+.. . ..+.++.+.+.++. |+.+++..+|..+
T Consensus 78 ~v~--------------~--~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 78 AVP--------------S--QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred eCC--------------H--HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 942 1 23456666777665 7888888888765
No 77
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.11 E-value=6.4e-05 Score=70.58 Aligned_cols=121 Identities=23% Similarity=0.327 Sum_probs=77.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
||+++|+|+ |.+|+++|..++..|+ ||.+--.+..+. .+..+.- .+++.+. +++.+.||+||.+.
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~~--------~i~~~~~-~dA~~~aDVVvLAV 68 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALGP--------LITGGSN-EDAAALADVVVLAV 68 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhcc--------ccccCCh-HHHHhcCCEEEEec
Confidence 689999998 9999999999999998 998886665222 1211111 1344443 46899999999994
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCC-----cHH------HHHHHHHHhCCCCCCCeEec
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNS-----TVP------IAAEVLKQKGVYDPKKLFGV 238 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~-----~~p------I~t~i~~~~sg~~~~kviGl 238 (412)
| +. -+.++.+++.....+-|+|=+|||.+. .+. -.+++.++. +|..||+.-
T Consensus 69 --P----------~~----a~~~v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~--lp~akVVkA 130 (211)
T COG2085 69 --P----------FE----AIPDVLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKL--LPGAKVVKA 130 (211)
T ss_pred --c----------HH----HHHhHHHHHHHHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHH--CCCcchhhh
Confidence 3 33 334455555544457788888999420 000 124555555 666677654
Q ss_pred -cccch
Q 015172 239 -TTLDV 243 (412)
Q Consensus 239 -t~Lds 243 (412)
.++..
T Consensus 131 Fn~i~a 136 (211)
T COG2085 131 FNTIPA 136 (211)
T ss_pred hcccCH
Confidence 55554
No 78
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.09 E-value=1.7e-05 Score=71.57 Aligned_cols=94 Identities=18% Similarity=0.289 Sum_probs=61.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
|+||++||. |.||..+|..|+..|+ +|+.||++..+ ..++.+.. .. ...++++.+++||+||.+.
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~g----~~---~~~s~~e~~~~~dvvi~~v--- 65 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEK--AEALAEAG----AE---VADSPAEAAEQADVVILCV--- 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHH--HHHHHHTT----EE---EESSHHHHHHHBSEEEE-S---
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhh--hhhhHHhh----hh---hhhhhhhHhhcccceEeec---
Confidence 689999998 9999999999999999 99999987522 12233322 21 2356778899999999983
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHH--HHhhC-CCeEEEEEcCCCC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEA--VADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~--i~~~~-p~aiviv~TNPv~ 214 (412)
.|.+.++++... +.... ++.++|. +++++
T Consensus 66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid-~sT~~ 97 (163)
T PF03446_consen 66 ------------PDDDAVEAVLFGENILAGLRPGKIIID-MSTIS 97 (163)
T ss_dssp ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE--SS--
T ss_pred ------------ccchhhhhhhhhhHHhhccccceEEEe-cCCcc
Confidence 244566777776 66666 5555544 44555
No 79
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.08 E-value=2.7e-05 Score=78.09 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=72.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhh-hcccCC----CC--ceeeecCCCcHHhhcCCCcEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAAD-LSHCNT----PS--QVLDFTGPEELASALKGVNVV 165 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~d-L~~~~~----~~--~v~~i~~t~d~~~al~~aDiV 165 (412)
+|||+|||+ |.||..+|..++..|. +|.++|.++......+ -..... .. ....+..+++++ +++++|+|
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA-ALATADLV 77 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChh-hccCCCEE
Confidence 579999998 9999999999999998 9999998642111110 000000 00 011222345664 78999999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172 166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG 237 (412)
Q Consensus 166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG 237 (412)
|++...+ ...++++.+.++. ++.+|+..+|..+. .+.+++. ++.+++++
T Consensus 78 il~vk~~----------------~~~~~~~~l~~~~~~~~iii~~~nG~~~-----~~~l~~~--~~~~~~~~ 127 (341)
T PRK08229 78 LVTVKSA----------------ATADAAAALAGHARPGAVVVSFQNGVRN-----ADVLRAA--LPGATVLA 127 (341)
T ss_pred EEEecCc----------------chHHHHHHHHhhCCCCCEEEEeCCCCCc-----HHHHHHh--CCCCcEEE
Confidence 9996322 1234455666655 67888778888762 2333444 45555544
No 80
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.02 E-value=7.8e-06 Score=77.18 Aligned_cols=103 Identities=21% Similarity=0.326 Sum_probs=82.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----h----hhhhhhhcccC-------CCCceeeecCCCcHHh
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----V----KGVAADLSHCN-------TPSQVLDFTGPEELAS 157 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~----~g~~~dL~~~~-------~~~~v~~i~~t~d~~~ 157 (412)
-||+|+|. |.+|+..|..++..|+ +|.||||.+ + .....+|.+.. ....+..+++|+++.|
T Consensus 4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 48999996 9999999999999999 999999986 1 22233444332 1134567889999999
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCC
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNS 215 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~ 215 (412)
..++|=.|=++ +.|.+.+++++.+++.+.. |..|+ +|-++..
T Consensus 81 ~vk~Ai~iQEc--------------vpE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~ 123 (313)
T KOG2305|consen 81 LVKGAIHIQEC--------------VPEDLNLKKQLYKQLDEIADPTTIL--ASSTSTF 123 (313)
T ss_pred HHhhhhhHHhh--------------chHhhHHHHHHHHHHHHhcCCceEE--ecccccc
Confidence 99999777777 6788999999999999988 88887 8877773
No 81
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.00 E-value=7.3e-05 Score=75.50 Aligned_cols=121 Identities=14% Similarity=0.144 Sum_probs=77.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc----C-CC--Cce-eeecCCCcHHhhcCCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC----N-TP--SQV-LDFTGPEELASALKGV 162 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~----~-~~--~~v-~~i~~t~d~~~al~~a 162 (412)
+.+|||+|||+ |.+|..+|..|+..| ++++|..++.. ..++.+. . .+ ..+ ..+..++|++++++++
T Consensus 5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 45689999998 999999999999887 47788876521 1122211 0 11 001 1223457887789999
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCc-HHHHHHHHHHhCCCCCCCe
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNST-VPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~-~pI~t~i~~~~sg~~~~kv 235 (412)
|+||++.- ...++++++++..+. ++..++.++|-.+.- .-.+++++.+. ++..++
T Consensus 79 DlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~--l~~~~~ 135 (341)
T PRK12439 79 DVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV--LPGHPA 135 (341)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH--cCCCCe
Confidence 99999941 345677777777766 677888888876520 11235566654 444443
No 82
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.99 E-value=7.4e-05 Score=73.28 Aligned_cols=121 Identities=19% Similarity=0.273 Sum_probs=72.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+|||+ |.||..+|..|+..|. +|.++|.+.. .....+-..............+++.++ ++++|+||++...
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVKA 76 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEeccc
Confidence 68999998 9999999999999997 9999998541 111100000000000111122455654 5999999999431
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe-cccc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG-VTTL 241 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG-lt~L 241 (412)
. -..++++.+..+. ++.+|+...|..+. .+.+.+. ++++++++ ++..
T Consensus 77 ~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~-----~~~l~~~--~~~~~i~~~~~~~ 125 (304)
T PRK06522 77 Y----------------QLPAALPSLAPLLGPDTPVLFLQNGVGH-----LEELAAY--IGPERVLGGVVTH 125 (304)
T ss_pred c----------------cHHHHHHHHhhhcCCCCEEEEecCCCCc-----HHHHHHh--cCcccEEEEEEEE
Confidence 1 1344555565554 67888888998873 2333443 55666664 3443
No 83
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.95 E-value=8.5e-05 Score=73.09 Aligned_cols=122 Identities=14% Similarity=0.187 Sum_probs=74.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhh-hh--cccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAA-DL--SHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~-dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|||+ |.||..+|..|+..|. +|.++|..+ ...... .+ .......... ....+++++..+++|+||++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVP-GPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEec-ceeecCHHHccCCCCEEEEEe
Confidence 68999998 9999999999999998 999999822 111110 01 1100001011 111345665568999999995
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEe-ccccc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFG-VTTLD 242 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviG-lt~Ld 242 (412)
..+ -..++.+.+.++. ++.+|+...|..+. .+.+... ++.+++++ ++...
T Consensus 77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~-----~~~l~~~--~~~~~v~~g~~~~~ 128 (305)
T PRK12921 77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQ-----LEQLEPY--FGRERVLGGVVFIS 128 (305)
T ss_pred ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCCh-----HHHHHHh--CCcccEEEEEEEEE
Confidence 322 2344555665554 67888888998872 2333444 66778774 44443
No 84
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.94 E-value=0.00014 Score=74.42 Aligned_cols=101 Identities=13% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..+||+|||+.|.||..+|..+...|+ +|.++|.+.. ++.++.+++||+||++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav-- 150 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV-- 150 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC--
Confidence 457999999449999999999999998 9999997520 13455789999999994
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEecc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt 239 (412)
| .+ ...++++++....|+++| +.+.+.- ..++..+.... +.+++|.+
T Consensus 151 P------------~~--~~~~~~~~l~~l~~~~iv--~Dv~SvK-~~~~~~~~~~~----~~~fvg~H 197 (374)
T PRK11199 151 P------------IH--LTEEVIARLPPLPEDCIL--VDLTSVK-NAPLQAMLAAH----SGPVLGLH 197 (374)
T ss_pred c------------HH--HHHHHHHHHhCCCCCcEE--EECCCcc-HHHHHHHHHhC----CCCEEeeC
Confidence 2 11 234445556653378877 4444321 22334443332 23588876
No 85
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.92 E-value=6.1e-05 Score=76.85 Aligned_cols=118 Identities=12% Similarity=0.322 Sum_probs=75.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC-----CCeEEEEecCch---hhhhhhhccc--C---CC-Cce-eeecCCCcHHh
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL-----VSALHLYDVMNV---KGVAADLSHC--N---TP-SQV-LDFTGPEELAS 157 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-----~~ev~L~Di~~~---~g~~~dL~~~--~---~~-~~v-~~i~~t~d~~~ 157 (412)
.+||+|||+ |..|..+|..++.++. ..+|.||..++. +..+.++.+. . .+ ..+ ..+..++|+++
T Consensus 11 ~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 11 PLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 479999998 9999999999998862 139999988862 2334444432 1 11 111 23444678888
Q ss_pred hcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh--hC-CCeEEEEEcCCCC---CcHHHHHHHHHHh
Q 015172 158 ALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD--NC-PDAFIHIISNPVN---STVPIAAEVLKQK 227 (412)
Q Consensus 158 al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~--~~-p~aiviv~TNPv~---~~~pI~t~i~~~~ 227 (412)
++++||+||++. | ...++++++++.. +. ++.++|.++-=.+ -..-.+++++++.
T Consensus 90 av~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~ 149 (365)
T PTZ00345 90 AVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEE 149 (365)
T ss_pred HHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHH
Confidence 999999999983 2 4567778888876 44 4556655532211 1001346666665
No 86
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.92 E-value=7.2e-05 Score=74.50 Aligned_cols=124 Identities=13% Similarity=0.231 Sum_probs=76.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhh---hhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAA---DLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~---dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
..|||+|||+ |.||..+|..|+..|. +|.+++.+....... .+..............+++.+ .+..+|+||++
T Consensus 4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila 79 (313)
T PRK06249 4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG 79 (313)
T ss_pred cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence 4589999998 9999999999999998 999999875211110 111000001111111123333 57899999999
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD 242 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld 242 (412)
.-... ..++.+.+.... |+++++...|-.+ . .+.+.+. +|+++|++- +...
T Consensus 80 vK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~----~-~e~l~~~--~~~~~v~~g~~~~~ 132 (313)
T PRK06249 80 LKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLG----V-EEQLREI--LPAEHLLGGLCFIC 132 (313)
T ss_pred ecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCC----c-HHHHHHH--CCCCcEEEEeeeEe
Confidence 43221 134445555544 7888888899887 2 3444555 678888764 5443
No 87
>PLN02427 UDP-apiose/xylose synthase
Probab=97.91 E-value=7.3e-05 Score=76.16 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=74.1
Q ss_pred CCCCCCCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchh-hhhhhhc----ccCCCCceeeecCCCcHHhhcC
Q 015172 87 ALQPQASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVK-GVAADLS----HCNTPSQVLDFTGPEELASALK 160 (412)
Q Consensus 87 ~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~-g~~~dL~----~~~~~~~v~~i~~t~d~~~al~ 160 (412)
..++.++|||.|+||+|++|++++..|+.+ +. +|+.+|.+... ....++. +........++....++.++++
T Consensus 8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~ 85 (386)
T PLN02427 8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK 85 (386)
T ss_pred CCCcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh
Confidence 456677799999999999999999999987 56 89999976421 1111110 0001111112222234566788
Q ss_pred CCcEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 161 GVNVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 161 ~aDiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
++|+||.+|+..... .....+.+..|+.-...+.+..++.. ..||.+|
T Consensus 86 ~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S 135 (386)
T PLN02427 86 MADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS 135 (386)
T ss_pred cCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 999999999754211 12233456677777777777776654 3444454
No 88
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.90 E-value=5.5e-05 Score=75.20 Aligned_cols=78 Identities=24% Similarity=0.319 Sum_probs=60.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
.|||+|||+ |.||.++|..++..|+ +|.+||++.. .+++++++++|+||++.
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--- 55 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--- 55 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC---
Confidence 479999998 9999999999999998 9999998641 24556789999999994
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhh--CCCeEEEEEcC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADN--CPDAFIHIISN 211 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~--~p~aiviv~TN 211 (412)
. ...++++++.+..+ .++.+++..|+
T Consensus 56 -----------p--~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 56 -----------S--MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred -----------C--hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 1 13456666777653 36778877776
No 89
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.90 E-value=6.4e-05 Score=76.09 Aligned_cols=116 Identities=16% Similarity=0.379 Sum_probs=72.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC------CCCeEEEEecCc---hhhhhhhhc--ccC---CCC-ce-eeecCCCcHHhh
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSP------LVSALHLYDVMN---VKGVAADLS--HCN---TPS-QV-LDFTGPEELASA 158 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~g------l~~ev~L~Di~~---~~g~~~dL~--~~~---~~~-~v-~~i~~t~d~~~a 158 (412)
||+|||+ |..|.++|..++.++ +..+|.||.+++ .......+. |.. .+. .+ ..+..++|++++
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6999998 999999999999888 113999999843 112222222 211 111 11 123446789889
Q ss_pred cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCC---cHHHHHHHHHHh
Q 015172 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNS---TVPIAAEVLKQK 227 (412)
Q Consensus 159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~---~~pI~t~i~~~~ 227 (412)
+++||+||++. | ...++++++++..+. ++.+++.++-=.+. ..-.+++++++.
T Consensus 80 l~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~ 136 (342)
T TIGR03376 80 AKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEE 136 (342)
T ss_pred HhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHH
Confidence 99999999983 3 456667777777665 45566555422110 011346776665
No 90
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=97.89 E-value=0.00018 Score=74.93 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=69.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C--ceeeecCCCcHHhhcCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S--QVLDFTGPEELASALKGVN 163 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~--~v~~i~~t~d~~~al~~aD 163 (412)
+|||+|||- |+||.++|..++. ++ +|+.||+++.+ +..|.....+ . ....+..+++++ ++++||
T Consensus 6 ~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~--ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~-~~~~ad 78 (425)
T PRK15182 6 EVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKR--ILELKNGVDVNLETTEEELREARYLKFTSEIE-KIKECN 78 (425)
T ss_pred CCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHH--HHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHH-HHcCCC
Confidence 489999998 9999999998776 56 99999999732 1222222111 0 011233456665 689999
Q ss_pred EEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCC
Q 015172 164 VVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVN 214 (412)
Q Consensus 164 iVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~ 214 (412)
+||++.+.|.+... ..++.-+....+.|.++. ++.++|+- |-|..
T Consensus 79 vvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg 125 (425)
T PRK15182 79 FYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPG 125 (425)
T ss_pred EEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence 99999999864432 123455555566666666 45555443 45554
No 91
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.88 E-value=7.8e-05 Score=73.26 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=79.5
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-CceeeecCCCcHHhhcCCCcEEEEcCCCCCCCC
Q 015172 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-SQVLDFTGPEELASALKGVNVVVIPAGVPRKPG 176 (412)
Q Consensus 98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g 176 (412)
|+||+|++|+.++..|+.+|-..+|+.+|+........++...... ....+++...++.+++++||+||.+|....-.+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence 8899999999999999999844599999987632221122222111 112355555678889999999999987533233
Q ss_pred -CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 177 -MTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 177 -~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
..+..+..-|+.-.+.+++...+..-..+| +|...+
T Consensus 82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV--ytSS~~ 118 (280)
T PF01073_consen 82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV--YTSSIS 118 (280)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE--EEcCcc
Confidence 456667889999999999999886544333 554444
No 92
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.87 E-value=6.2e-05 Score=75.34 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=62.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc--C-C-CCcee-eecCCCcHHhhcCCCcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC--N-T-PSQVL-DFTGPEELASALKGVNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~--~-~-~~~v~-~i~~t~d~~~al~~aDiVIi 167 (412)
+|||+|||+ |.||..+|..|+..|. +|++||.++.......-.+. . . ...+. .+..+++++++++++|+||+
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVV 80 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence 689999998 9999999999999998 99999997522111111100 0 0 00010 12234577778899999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
+.. .. .++++.+.+ .|+.+++..+|..+
T Consensus 81 ~v~--------------~~--~~~~v~~~l---~~~~~vi~~~~Gi~ 108 (328)
T PRK14618 81 AVP--------------SK--ALRETLAGL---PRALGYVSCAKGLA 108 (328)
T ss_pred ECc--------------hH--HHHHHHHhc---CcCCEEEEEeeccc
Confidence 941 11 123343332 36778877888643
No 93
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.87 E-value=0.00028 Score=75.63 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcc-----cC------CCCceeeecCCCcHHhh
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSH-----CN------TPSQVLDFTGPEELASA 158 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~-----~~------~~~~v~~i~~t~d~~~a 158 (412)
..+.|.|+||+|++|..++..|+..|. +|++++++.. .....++.+ .. ......++.-..++.++
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 446799999999999999999999998 9999998762 111111111 00 00011122222345567
Q ss_pred cCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172 159 LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208 (412)
Q Consensus 159 l~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv 208 (412)
+.++|+||.++|.......+....+..|......+++.+.+..-.-+|++
T Consensus 157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V 206 (576)
T PLN03209 157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV 206 (576)
T ss_pred hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 89999999999875432112122344566677778887776543444433
No 94
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.85 E-value=4.2e-05 Score=62.32 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=60.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEE-ecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPL-VSALHLY-DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~-Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
||+|||+ |.||..++..+...|+ -.+|.++ +.++.+. .++... .+ ... . +.++.++++++|+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~--~~~~~~-~~--~~~-~-~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKA--AELAKE-YG--VQA-T-ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHH--HHHHHH-CT--TEE-E-SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHH--HHHHHh-hc--ccc-c-cCChHHhhccCCEEEEEEC--
Confidence 7999998 9999999999999982 1288866 8876221 112111 11 111 1 2256678999999999941
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
-..+.++.+++....++.++|-++||
T Consensus 71 --------------p~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --------------PQQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --------------GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --------------HHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 13345566666334478888777765
No 95
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=97.82 E-value=0.00012 Score=75.98 Aligned_cols=108 Identities=14% Similarity=0.133 Sum_probs=69.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC-------C------ceeeecCCCcHHhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP-------S------QVLDFTGPEELASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~-------~------~v~~i~~t~d~~~al 159 (412)
++||+|||. |.||..+|..|+..|. +|+.+|+++.+-.. +.....+ . ....+..+++ +
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~----~ 73 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRATTT----P 73 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceeeecc----c
Confidence 479999998 9999999999999998 99999998732111 1111100 0 0011222232 4
Q ss_pred CCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE-cCCCCC
Q 015172 160 KGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII-SNPVNS 215 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~-TNPv~~ 215 (412)
++||+||++.+.|.++.. ..++..+.+.++.+.++. ++.+||+- |.|...
T Consensus 74 ~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 589999999988864432 234566666777777776 56666554 445553
No 96
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.78 E-value=0.00016 Score=72.18 Aligned_cols=120 Identities=13% Similarity=0.345 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc----cC-CC-Ccee-eecCCCcHHhhc-CCCcEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH----CN-TP-SQVL-DFTGPEELASAL-KGVNVV 165 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~----~~-~~-~~v~-~i~~t~d~~~al-~~aDiV 165 (412)
|||+|||| |.||..++..|+..|. +|.|++.++.. ...+.. .. .+ ..+. .+..++|+++++ .++|+|
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dli 75 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTT--FESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCI 75 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHH--HHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEE
Confidence 68999998 9999999999999997 99999997521 111211 10 00 0011 122346776666 589999
Q ss_pred EEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hC-CCeEEEEEcCCCCCc-HHHHHHHHHHhCCCCCCCeE
Q 015172 166 VIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NC-PDAFIHIISNPVNST-VPIAAEVLKQKGVYDPKKLF 236 (412)
Q Consensus 166 Iiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~-p~aiviv~TNPv~~~-~pI~t~i~~~~sg~~~~kvi 236 (412)
|++.- ..-+.++++.+.. +. ++..++..+|-.+.. .....+++.+. +|.+++.
T Consensus 76 iiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~--~~~~~~~ 131 (326)
T PRK14620 76 ILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEI--LPNNPIA 131 (326)
T ss_pred EEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHH--cCCCceE
Confidence 99941 3445566666665 44 677777788876420 11224555555 4555544
No 97
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.74 E-value=0.00016 Score=70.88 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=56.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
|||+|||. |.||..++..|...|. +|.++|.++. ...+.+. .. .. ..+++++ .+++||+||++..
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g~---~~--~~~~~~~-~~~~aDlVilavp-- 66 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---GL---VD--EASTDLS-LLKDCDLVILALP-- 66 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---CC---cc--cccCCHh-HhcCCCEEEEcCC--
Confidence 58999998 9999999999999998 9999999762 2122111 11 11 1234554 6899999999942
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEE
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFI 206 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiv 206 (412)
.....++.+++.++. |++++
T Consensus 67 --------------~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 --------------IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred --------------HHHHHHHHHHHHHhCCCCcEE
Confidence 122234556666665 56655
No 98
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.72 E-value=0.00035 Score=73.01 Aligned_cols=90 Identities=21% Similarity=0.362 Sum_probs=60.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+||||.|.||..++..+...|. +|.++|.++.. ..+.++ . +. .++++++.+.+||+||++..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-----g--v~---~~~~~~e~~~~aDvVIlavp- 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-----G--VE---YANDNIDAAKDADIVIISVP- 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-----C--Ce---eccCHHHHhccCCEEEEecC-
Confidence 6899998559999999999999998 99999987522 122111 1 11 23466678899999999942
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN 211 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN 211 (412)
.....++++++..+. |+++++-++.
T Consensus 68 ---------------~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 68 ---------------INVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred ---------------HHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 123345555555555 6777765554
No 99
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.70 E-value=0.00033 Score=67.82 Aligned_cols=95 Identities=16% Similarity=0.264 Sum_probs=62.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEE-ecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPL--VSALHLY-DVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~-Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
|||++||. |.||..++..|...|+ ..+|+.+ |.+..+. ..+.+.. +. + ..+..+.+++||+||++.
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~--~~~~~~g----~~-~--~~~~~e~~~~aDvVil~v- 69 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARR--DVFQSLG----VK-T--AASNTEVVKSSDVIILAV- 69 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHH--HHHHHcC----CE-E--eCChHHHHhcCCEEEEEE-
Confidence 68999998 9999999999998875 3478888 7765321 2222211 11 1 235556789999999994
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
+-..++++...+..+. |+.++|..++...
T Consensus 70 ---------------~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 70 ---------------KPQVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred ---------------CcHHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 1234556666666555 6777765555544
No 100
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.70 E-value=0.00031 Score=65.81 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-----hhhhh---hh------------hcccCCCCcee----e
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-----VKGVA---AD------------LSHCNTPSQVL----D 148 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-----~~g~~---~d------------L~~~~~~~~v~----~ 148 (412)
..||+|+|+ |.+|+.+|..|+..|+ .+|+|+|.+. +.... .| |.+......+. .
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 368999998 9999999999999996 6899999983 10000 01 11111111121 1
Q ss_pred ecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208 (412)
Q Consensus 149 i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv 208 (412)
++ ..++.+.++++|+||.+ .+|.+....+.+.+.+..+..+++.
T Consensus 99 i~-~~~~~~~~~~~DlVi~a---------------~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 99 IT-EENIDKFFKDADIVCEA---------------FDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred CC-HhHHHHHhcCCCEEEEC---------------CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 21 23445568999999999 4677888888888887776544433
No 101
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.69 E-value=0.00037 Score=68.73 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
+||++||- |.||.++|..|...|+ +|+.||.+..+. +..+...... ...++.++.+++|+||...
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga~-------~a~s~~eaa~~aDvVitmv---- 65 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGAT-------VAASPAEAAAEADVVITML---- 65 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCCc-------ccCCHHHHHHhCCEEEEec----
Confidence 58999998 9999999999999999 999999986443 2223232211 1234567899999999983
Q ss_pred CCCCchhhHHHhhHHHHHHHHH---HHHhhC-CCeEEEEEcCCCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVE---AVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~---~i~~~~-p~aiviv~TNPv~ 214 (412)
-|-+.++++.. -+.+.. |..++|..| +.+
T Consensus 66 -----------~~~~~V~~V~~g~~g~~~~~~~G~i~IDmS-Tis 98 (286)
T COG2084 66 -----------PDDAAVRAVLFGENGLLEGLKPGAIVIDMS-TIS 98 (286)
T ss_pred -----------CCHHHHHHHHhCccchhhcCCCCCEEEECC-CCC
Confidence 24466666663 344444 666665543 444
No 102
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.68 E-value=0.00031 Score=70.84 Aligned_cols=89 Identities=19% Similarity=0.307 Sum_probs=59.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||. |.||..+|..+...|. +|+.||.+..... +. . ..+.++++.+++||+|+++...
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~~--~~--------~---~~~~~l~ell~~aDiVil~lP~ 208 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKDL--DF--------L---TYKDSVKEAIKDADIISLHVPA 208 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHhh--hh--------h---hccCCHHHHHhcCCEEEEeCCC
Confidence 4579999998 9999999999988888 9999998752100 00 1 1234677889999999998421
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
. .++..+ +.+.+-+.. |++++|+++
T Consensus 209 t-----------~~t~~l---i~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 209 N-----------KESYHL---FDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred c-----------HHHHHH---HhHHHHhcCCCCcEEEEcC
Confidence 1 111122 223333344 789998886
No 103
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.68 E-value=0.0005 Score=66.59 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=62.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCC-CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLV-SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~-~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
+|||+|||+ |.||..++..+...+.. .+|.++|.+... ...+.+. .. +. + +.+.++.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~-~g--~~-~--~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEE-YG--VR-A--ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHh-cC--Ce-e--cCChHHHHhcCCEEEEEcC-
Confidence 579999998 99999999999888721 379999997522 1112211 01 11 1 2455567899999999841
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
...++++.+.+..+. +..|+..+|...
T Consensus 72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 234556666666554 556666666554
No 104
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.68 E-value=0.00036 Score=72.86 Aligned_cols=112 Identities=13% Similarity=0.045 Sum_probs=73.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
++.|||.|+||+|++|+.++..|+.+|. +|+.+|.... ......+.. .+ .+..+.+ +-.++.+.++|+||.+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~~--~~-~~~~~~~-Di~~~~~~~~D~ViHl 191 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLFG--NP-RFELIRH-DVVEPILLEVDQIYHL 191 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhcc--CC-ceEEEEC-ccccccccCCCEEEEC
Confidence 4568999999999999999999999998 9999997531 111111110 01 1221111 1122357899999999
Q ss_pred CCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 169 AGVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 169 ag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
|+... ....+..+.+..|+....++++.+.+... .+|.+|
T Consensus 192 Aa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 192 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred ceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 87532 22234556778999999999999887653 454443
No 105
>PLN00198 anthocyanidin reductase; Provisional
Probab=97.62 E-value=0.00055 Score=68.22 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCcee----eecCCCcHHhhcCCCcE
Q 015172 90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVL----DFTGPEELASALKGVNV 164 (412)
Q Consensus 90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~aDi 164 (412)
|.++++|.|+||+|++|++++..|+..|. +|++++.+. ......++........+. +++...++.+.++++|+
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~ 83 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDL 83 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCE
Confidence 45568999999999999999999999998 888777654 111111111100000111 22222345567889999
Q ss_pred EEEcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhhC
Q 015172 165 VVIPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 165 VIiaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
||.+|+.......+ ..+++..|+.....+.+.+.+..
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~ 121 (338)
T PLN00198 84 VFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAK 121 (338)
T ss_pred EEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99998743211122 23456789999999999987764
No 106
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=97.61 E-value=0.00051 Score=67.60 Aligned_cols=106 Identities=14% Similarity=0.060 Sum_probs=69.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI 166 (412)
.+||.|+||+|++|+.++..|+.+|. +|+.++.+... .....+... .....+ .++.-..++.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 36899999999999999999999998 89888876521 111111110 000011 12322345667789999999
Q ss_pred EcCCCCCCCCCch-hhHHHhhHHHHHHHHHHHHhh
Q 015172 167 IPAGVPRKPGMTR-DDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 167 iaag~p~k~g~~r-~dl~~~N~~i~~~i~~~i~~~ 200 (412)
.+|+......... .+.+..|+.....+++.+.+.
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~ 116 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV 116 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 9987542211122 356677999999999988765
No 107
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.61 E-value=0.00026 Score=70.10 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||+|||. |.||..++..++..|+ +|.+||++.... ..+...... ......++.+.++++|+||++.
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~--~~l~~~g~~----~~~s~~~~~~~~~~~dvIi~~v---- 67 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAV--KAMKEDRTT----GVANLRELSQRLSAPRVVWVMV---- 67 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHcCCc----ccCCHHHHHhhcCCCCEEEEEc----
Confidence 58999998 9999999999999998 999999986321 122221110 0111123344567899999983
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV 213 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv 213 (412)
.. ..++++++.+.... ++.++|..+|..
T Consensus 68 ----------p~--~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 68 ----------PH--GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred ----------Cc--hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 11 14555666666666 677887777653
No 108
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.60 E-value=0.0007 Score=66.42 Aligned_cols=119 Identities=16% Similarity=0.186 Sum_probs=74.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
|+||+|||+ |.||..++..+...+.. .+|+++|.+... ....+... ... .. + +.+..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~-~~~-~~-~--~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK-YPT-VE-L--ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH-cCC-eE-E--eCCHHHHHhhCCEEEEecC
Confidence 578999998 99999999999888732 389999986421 11112111 111 11 1 2455667899999999842
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD 242 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld 242 (412)
...+.++++++..+. ++.+||.+.|-.+ + .++ ++. ++..+|+=+ .++.
T Consensus 74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~----~-~~l-~~~--~~~~~vvR~MPN~~ 123 (277)
T PRK06928 74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVS----L-DDL-LEI--TPGLQVSRLIPSLT 123 (277)
T ss_pred ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC----H-HHH-HHH--cCCCCEEEEeCccH
Confidence 234556667776655 5667777788777 2 333 333 344466544 4443
No 109
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00028 Score=71.79 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=82.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch------hhhhhhhcccCCC------CceeeecCCCcHHhhcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV------KGVAADLSHCNTP------SQVLDFTGPEELASALK 160 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~------~g~~~dL~~~~~~------~~v~~i~~t~d~~~al~ 160 (412)
.++|+|||- |+||..+|..++.+|. +|+-+|||+. .|+. -+.+.... .....+..|+|++ .++
T Consensus 9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~-~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~ 83 (436)
T COG0677 9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGES-YIEEPDLDEVVKEAVESGKLRATTDPE-ELK 83 (436)
T ss_pred ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcc-eeecCcHHHHHHHHHhcCCceEecChh-hcc
Confidence 379999998 9999999999999999 9999999972 1111 00111000 0011244578887 589
Q ss_pred CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCC-CeEEEE-EcCCCCCcHHHHHHHHHHhCCCCC
Q 015172 161 GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP-DAFIHI-ISNPVNSTVPIAAEVLKQKGVYDP 232 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p-~aiviv-~TNPv~~~~pI~t~i~~~~sg~~~ 232 (412)
.||++|+++-.|.+... .-++..+.+-++.|.++.. ...+|+ .|-|...+=-++--+++..+|+--
T Consensus 84 ~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~ 151 (436)
T COG0677 84 ECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKF 151 (436)
T ss_pred cCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcc
Confidence 99999999888865432 2346777788888888884 333322 255655433333334455455544
No 110
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.58 E-value=0.00056 Score=67.09 Aligned_cols=104 Identities=18% Similarity=0.198 Sum_probs=69.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||.|+||+|++|..++..|+..|. +|+.+|.+.... .++.+........++....++++.++++|+||..++...
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~ 76 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR 76 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence 5899999999999999999999997 999999865211 111111111111122222345667889999999986532
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
....+..+....|+.....+++.+.+..
T Consensus 77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 104 (328)
T TIGR03466 77 LWAPDPEEMYAANVEGTRNLLRAALEAG 104 (328)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2233445566778888888888887654
No 111
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.56 E-value=0.00047 Score=68.38 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=66.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||.|+||+|++|+.++..|...|. +|+.++.+.... ..+.+........++.-..++.++++++|+||.+++...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence 6899999999999999999999998 999998874211 111111111101122222456678999999999875432
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPD 203 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~ 203 (412)
. ...+....|......+++.+++..-.
T Consensus 77 ~---~~~~~~~~~~~~~~~l~~aa~~~gvk 103 (317)
T CHL00194 77 S---DLYNAKQIDWDGKLALIEAAKAAKIK 103 (317)
T ss_pred C---CccchhhhhHHHHHHHHHHHHHcCCC
Confidence 1 11223455677777888888776544
No 112
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00082 Score=68.94 Aligned_cols=76 Identities=21% Similarity=0.279 Sum_probs=51.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
||||.|||| |.||+.+|..|++++. .+|++-|.... ...+.+..+.......-+......+.+.+++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 589999998 9999999999999985 59999999852 2222222211111111122222345568899999999964
No 113
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=97.55 E-value=0.00057 Score=68.75 Aligned_cols=108 Identities=18% Similarity=0.053 Sum_probs=70.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhc----cc---CCCCceeeecCCCcHHhhcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLS----HC---NTPSQVLDFTGPEELASALKGV 162 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~----~~---~~~~~v~~i~~t~d~~~al~~a 162 (412)
+++||.|+||+|++|++++..|+..|. +|+.+|.... .....++. +. .......++....++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 357999999999999999999999997 9999998531 10011111 00 0000111232222445567899
Q ss_pred cEEEEcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 163 NVVVIPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 163 DiVIiaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
|+||.+|+....+ .++..+....|+....++.+.+++..
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~ 132 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAH 132 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998764322 23344567788999999999888764
No 114
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=97.53 E-value=0.00068 Score=67.63 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=72.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++|.|+||+|++|++++..|+..|-..+|+++|.+.... ...++..........+++...++.++++++|+||.+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag 83 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAA 83 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECcc
Confidence 4689999999999999999998876223899999865221 11112111110001122222345567789999999998
Q ss_pred CCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 171 VPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 171 ~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
....+ ..+..+.+..|+.....+.+.+.+....-+|
T Consensus 84 ~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV 121 (324)
T TIGR03589 84 LKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVV 121 (324)
T ss_pred cCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 64322 2234567788998889999988876533333
No 115
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.53 E-value=0.00058 Score=67.51 Aligned_cols=118 Identities=22% Similarity=0.253 Sum_probs=71.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc----CCCC----ceeeecCCCcHHhhcC--CCc
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPS----QVLDFTGPEELASALK--GVN 163 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~----~~~~----~v~~i~~t~d~~~al~--~aD 163 (412)
|.|+||+|++|+.++..++..+. .+|+|+|.++ ......++... .... .+.++.....+...++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999998874 5899999998 23333444211 1110 1122221223345677 999
Q ss_pred EEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc----CCCC
Q 015172 164 VVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS----NPVN 214 (412)
Q Consensus 164 iVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T----NPv~ 214 (412)
+|+.+|....-|- .+..+.+..|+---+.+++...++.-+-+|.+-| ||.+
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn 136 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN 136 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc
Confidence 9999987644332 2446668899999999999999888666666654 6666
No 116
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.53 E-value=0.00039 Score=68.38 Aligned_cols=65 Identities=15% Similarity=0.266 Sum_probs=48.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
+|||+|||. |.||..+|..++..|. +|.+||++..... .+.... . ..++++++.+++||+||++.
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~g----~---~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAAG----A---ETASTAKAVAEQCDVIITML 66 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----C---eecCCHHHHHhcCCEEEEeC
Confidence 468999998 9999999999999998 9999999863211 111111 1 12356777889999999994
No 117
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.52 E-value=0.0011 Score=67.49 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=59.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
+||+|||. |.||..++..+...|+ ++.++|.+........ ...... ... .++++++++++||+||++..
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~--a~~~~~-~~~--~~~~~~~~~~~aDlVilavP--- 69 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLAR--ALGFGV-IDE--LAADLQRAAAEADLIVLAVP--- 69 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHH--HhcCCC-Ccc--cccCHHHHhcCCCEEEEeCC---
Confidence 47999998 9999999999999998 8899998762211111 001111 111 23567778899999999942
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhh-C-CCeEEEEE
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADN-C-PDAFIHII 209 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~-~-p~aiviv~ 209 (412)
. ..+.++++++.+. . |+++|..+
T Consensus 70 -----------~--~~~~~vl~~l~~~~l~~~~ivtDv 94 (359)
T PRK06545 70 -----------V--DATAALLAELADLELKPGVIVTDV 94 (359)
T ss_pred -----------H--HHHHHHHHHHhhcCCCCCcEEEeC
Confidence 1 2345666677652 3 67666433
No 118
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.52 E-value=0.0003 Score=69.14 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=46.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
||+|||. |.||..+|..++..|+ +|++||.+... ...+.+... . ..++..+++++||+||++.
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~---~~~~~~~~~~~aDivi~~v 63 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----V---TAETARQVTEQADVIFTMV 63 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence 6999998 9999999999999998 99999998622 112222211 0 1235667899999999994
No 119
>PRK07680 late competence protein ComER; Validated
Probab=97.51 E-value=0.00053 Score=66.90 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+|||+ |.||..++..+...|.+ .+|.++|.+.... ..+.+. .+ ... .+.+..+.++++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~--~~~~~~-~~-g~~---~~~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKA--YHIKER-YP-GIH---VAKTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHH--HHHHHH-cC-CeE---EECCHHHHHHhCCEEEEecC-
Confidence 58999998 99999999999888742 4799999976221 122221 11 121 12455567899999999941
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
-..+.++.+.+..+. ++.+|+-++|.++
T Consensus 72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 223455666666655 6778888888776
No 120
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.49 E-value=0.00044 Score=72.92 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=65.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIiaa 169 (412)
+.+|+|||. |.||.++|..|+.+|+ +|.+||+++.+. .++......... .+.++.++++.++ ++|+||+.+
T Consensus 1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~--~~l~~~~~~~g~-~i~~~~s~~e~v~~l~~~d~Iil~v 74 (470)
T PTZ00142 1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKT--EEFVKKAKEGNT-RVKGYHTLEELVNSLKKPRKVILLI 74 (470)
T ss_pred CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHHhhhhcCC-cceecCCHHHHHhcCCCCCEEEEEe
Confidence 358999998 9999999999999999 999999986321 122211000000 1223456766554 589888873
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV 213 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv 213 (412)
- +-+.++++++.+..+. |+.+||..+|-.
T Consensus 75 ~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 75 K---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred C---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 1 2345566666666665 788888887743
No 121
>PLN02214 cinnamoyl-CoA reductase
Probab=97.49 E-value=0.001 Score=66.80 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEE
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVI 166 (412)
++++|.|+||+|++|++++..|+.+|. +|+..+.+... .....+...... ....+++...++.++++++|+||
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 457899999999999999999999998 89998876421 111112111000 00112323345667889999999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
.+|+... ....+.+..|+.-...+.+.+.+....-+|
T Consensus 87 h~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V 123 (342)
T PLN02214 87 HTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVV 123 (342)
T ss_pred EecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9987542 234556778888889999888876533333
No 122
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.48 E-value=0.0016 Score=64.65 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=59.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
.+||+|||+ |.||..++..+...|...+|.++|.++. ...+.+ ... .... ..++++.+++||+||++...
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g~---~~~~--~~~~~~~~~~aDvViiavp~ 76 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LGL---GDRV--TTSAAEAVKGADLVILCVPV 76 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CCC---Ccee--cCCHHHHhcCCCEEEECCCH
Confidence 479999998 9999999999998886458999999862 111111 111 0111 23455678999999999531
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
....++.+.+..+. |+++|+.++
T Consensus 77 ----------------~~~~~v~~~l~~~l~~~~iv~dvg 100 (307)
T PRK07502 77 ----------------GASGAVAAEIAPHLKPGAIVTDVG 100 (307)
T ss_pred ----------------HHHHHHHHHHHhhCCCCCEEEeCc
Confidence 12244455555554 677665443
No 123
>PLN02650 dihydroflavonol-4-reductase
Probab=97.45 E-value=0.0012 Score=66.36 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=69.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI 166 (412)
.++|.|+||+|++|++++..|+..|. +|++++.+.. .....++... .....+ .+++....+.+.++++|+||
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 46899999999999999999999998 9998887641 1111122110 000011 12322334566788999999
Q ss_pred EcCCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHhhC
Q 015172 167 IPAGVPRKPGMT-RDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 167 iaag~p~k~g~~-r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.+|+.......+ ..+.+..|+.....+++.+.+..
T Consensus 83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~ 118 (351)
T PLN02650 83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK 118 (351)
T ss_pred EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence 998753211112 23456778888889999888764
No 124
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.43 E-value=0.0018 Score=63.35 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=62.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.|||+|||+ |.||..++..++..|. ..+|+++|++..+ ...++... .. +. . +.+..+.+++||+||++.-
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~-~g--~~-~--~~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQK-YG--VK-G--THNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHh-cC--ce-E--eCCHHHHHhcCCEEEEEeC
Confidence 379999998 9999999999998872 1488999875411 12222221 11 11 1 2455567899999999942
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
-....+++..+..+. ++.+||-+.+.++
T Consensus 75 ----------------p~~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 75 ----------------PKDVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 112233445555544 6777766667776
No 125
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=97.43 E-value=0.0016 Score=65.23 Aligned_cols=117 Identities=17% Similarity=0.079 Sum_probs=79.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hh--hhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEE
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VK--GVAADLSHCNTP--SQVLDFTGPEELASALKGVNVV 165 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~--g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiV 165 (412)
..++|+|.||+|++|+.+...|+.+|+ .|+--=+++ .+ .+..+|...... ....++.-.+.+.+++++||.|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV 82 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV 82 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence 468999999999999999999999999 776654444 22 245555543321 1123444456788899999999
Q ss_pred EEcCCCCCCCCC-chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172 166 VIPAGVPRKPGM-TRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211 (412)
Q Consensus 166 Iiaag~p~k~g~-~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN 211 (412)
+.+|....-... .-.+++.-+++-...+.+.+.+.. ...=+|+|.
T Consensus 83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TS 128 (327)
T KOG1502|consen 83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTS 128 (327)
T ss_pred EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEec
Confidence 999864321111 244678888899999999998876 332233553
No 126
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.42 E-value=0.00063 Score=59.90 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=75.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|+|+|+ |.||..+|+.|...|. +|.|++... ..... ..+........+.......+..+....+|+||++.-.
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa 77 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA 77 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence 789998 9999999999999998 999999876 11110 1111111001111111112222357999999999421
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec-cccc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLD 242 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl-t~Ld 242 (412)
.-..++.+.++.+. |++.++..-|=.+ . -+.+.+. +++++|++- +...
T Consensus 78 ----------------~~~~~~l~~l~~~~~~~t~iv~~qNG~g----~-~~~l~~~--~~~~~v~~g~~~~g 127 (151)
T PF02558_consen 78 ----------------YQLEQALQSLKPYLDPNTTIVSLQNGMG----N-EEVLAEY--FPRPRVLGGVTTIG 127 (151)
T ss_dssp ----------------GGHHHHHHHHCTGEETTEEEEEESSSSS----H-HHHHHCH--STGSGEEEEEEEEE
T ss_pred ----------------cchHHHHHHHhhccCCCcEEEEEeCCCC----c-HHHHHHH--cCCCcEEEEEEeEe
Confidence 11244666687777 8888988999888 3 3555555 567788754 5433
No 127
>PLN02256 arogenate dehydrogenase
Probab=97.42 E-value=0.0016 Score=64.92 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=68.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa 169 (412)
.+.+||+|||. |.||+.++..+...|. +|+.+|.+.....+.++ . +.. .++.++.+ .++|+||++.
T Consensus 34 ~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 34 SRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence 45689999998 9999999999988887 89999987522222111 1 111 24555554 4799999984
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHH-HhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCC-CCeEecc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAV-ADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDP-KKLFGVT 239 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i-~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~-~kviGlt 239 (412)
. .....++++++ ..+. |+++|+-++..=. .+ .+.+.+. ++. .++||..
T Consensus 101 p----------------~~~~~~vl~~l~~~~l~~~~iviDv~SvK~---~~-~~~~~~~--l~~~~~~V~~H 151 (304)
T PLN02256 101 S----------------ILSTEAVLRSLPLQRLKRSTLFVDVLSVKE---FP-KNLLLQV--LPEEFDILCTH 151 (304)
T ss_pred C----------------HHHHHHHHHhhhhhccCCCCEEEecCCchH---HH-HHHHHHh--CCCCCeEEecC
Confidence 2 12345555555 2333 7887755554212 23 2333443 222 3577774
No 128
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.41 E-value=0.00085 Score=60.52 Aligned_cols=91 Identities=25% Similarity=0.321 Sum_probs=62.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP 175 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~ 175 (412)
|.|+||+|.+|..++..|..+|. +|+++-.++.+.. + +........++.-..++.++++++|.||.++|.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~- 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK- 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT-
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc-
Confidence 78999999999999999999997 9999988763211 1 111000001111123456789999999999876543
Q ss_pred CCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172 176 GMTRDDLFNINANIVKTLVEAVADNCPD 203 (412)
Q Consensus 176 g~~r~dl~~~N~~i~~~i~~~i~~~~p~ 203 (412)
+....+.+++.+++....
T Consensus 74 ----------~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 74 ----------DVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp ----------HHHHHHHHHHHHHHTTSS
T ss_pred ----------cccccccccccccccccc
Confidence 267788888888876633
No 129
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.40 E-value=0.00096 Score=66.84 Aligned_cols=112 Identities=18% Similarity=0.132 Sum_probs=67.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhccc-CCCCceeeec-CCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFT-GPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~-~t~d~~~al~~aDiVIiaa 169 (412)
||||.|+||+|++|+.++..|+.. +. +|+.+|..... ..++... .......++. ....+.+.++++|+||.++
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 579999999999999999999875 66 99999975311 1111111 1110011221 1122335678999999988
Q ss_pred CCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 170 GVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 170 g~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
+... ....+.......|+.....+++.+.+.. ..+|.+|
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~S 117 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPS 117 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEe
Confidence 7532 2222333445667777778888877653 3444444
No 130
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.39 E-value=0.00068 Score=67.10 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=48.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|+||+|||. |.||..++..++..|. +|++||+++... .++.... . ....++.+++++||+||++.
T Consensus 1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~--~~~~~~g----~---~~~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAV--DALVDKG----A---TPAASPAQAAAGAEFVITML 65 (296)
T ss_pred CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHcC----C---cccCCHHHHHhcCCEEEEec
Confidence 358999998 9999999999999998 999999986321 1222211 1 12345667889999999984
No 131
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.39 E-value=0.0014 Score=64.18 Aligned_cols=96 Identities=8% Similarity=0.181 Sum_probs=62.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
+||++||+ |.||..++..+...|+ ..+|+.+|.+... ...+.+. .. +. . +++..+.+++||+||++..
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~-~g--~~-~--~~~~~e~~~~aDiIiLavk- 72 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDK-YG--IT-I--TTNNNEVANSADILILSIK- 72 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHh-cC--cE-E--eCCcHHHHhhCCEEEEEeC-
Confidence 68999998 9999999999998875 3479999987522 1222221 01 11 1 2345557899999999942
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
-..+.++.+.+..+. ++.+||-+.-.++
T Consensus 73 ---------------P~~~~~vl~~l~~~~~~~~lvISi~AGi~ 101 (272)
T PRK12491 73 ---------------PDLYSSVINQIKDQIKNDVIVVTIAAGKS 101 (272)
T ss_pred ---------------hHHHHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence 134555556666555 5667755555555
No 132
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.38 E-value=0.0014 Score=68.65 Aligned_cols=112 Identities=13% Similarity=0.038 Sum_probs=71.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
.+.|||.|+||+|++|+.++..|+.+|. +|+.+|.... .....+.. .. ..+..+.+ +-..+.+.++|+||.+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~~--~~-~~~~~i~~-D~~~~~l~~~D~ViHl 190 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHHF--SN-PNFELIRH-DVVEPILLEVDQIYHL 190 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhhc--cC-CceEEEEC-CccChhhcCCCEEEEe
Confidence 3558999999999999999999999998 9999986431 11111111 00 11222221 1122356789999999
Q ss_pred CCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 169 AGVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 169 ag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
|+... ....+..+.+..|+.....+.+.+++.. ..+|.+|
T Consensus 191 Aa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~S 232 (442)
T PLN02206 191 ACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTS 232 (442)
T ss_pred eeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEEC
Confidence 87532 1122345667889999999999887764 3454443
No 133
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=97.34 E-value=0.0018 Score=64.18 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=66.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhh---hhhhcccCCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGV---AADLSHCNTPSQVLDFTGPEELASALK--GVNVVV 166 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~---~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVI 166 (412)
|||.|+||+|++|..++..|+..|. +|+++|... .... ..++.+........+++-..++.++++ ++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 6899999999999999999999998 999998642 1111 111111111000112211122333444 689999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.+++..... .....+.+..|+.....+++.+.+..
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 115 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN 115 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 998764321 12345667888988899988887754
No 134
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0034 Score=61.85 Aligned_cols=90 Identities=20% Similarity=0.278 Sum_probs=55.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~ 171 (412)
.++|+|+|. |.||..+|..+...|+ .+.+++.+.-.+....-.... +.+ ..+.+. .++.+++|+||+++
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lg----v~d-~~~~~~~~~~~~~aD~Vivav-- 72 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELG----VID-ELTVAGLAEAAAEADLVIVAV-- 72 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcC----ccc-ccccchhhhhcccCCEEEEec--
Confidence 579999998 9999999999999999 777777765211111000000 100 011222 35789999999994
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEE
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFI 206 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiv 206 (412)
| +....++++++..+. |+++|
T Consensus 73 P--------------i~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 73 P--------------IEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred c--------------HHHHHHHHHHhcccCCCCCEE
Confidence 3 334444555555444 67777
No 135
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.27 E-value=0.0029 Score=62.96 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=72.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhh----hhcccCCCCceeeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAA----DLSHCNTPSQVLDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~----dL~~~~~~~~v~~i~~t~d~~~al~~aDiVI 166 (412)
.|||+|+|+ |.||+.++..|...|. +|.|++... ...... .+.+........ .... +. +.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~-~~~~-~~-~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYA-IPAE-TA-DAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeec-cCCC-Cc-ccccccCEEE
Confidence 479999998 9999999999999997 999999863 111111 011111111111 1111 11 2356899999
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeEec
Q 015172 167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV 238 (412)
Q Consensus 167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kviGl 238 (412)
++.- ... ..+..+.+..+. +++.++..-|=++. -+.+.+. ++.+++++-
T Consensus 76 v~vK---------------~~~-~~~al~~l~~~l~~~t~vv~lQNGv~~-----~e~l~~~--~~~~~v~~g 125 (305)
T PRK05708 76 LACK---------------AYD-AEPAVASLAHRLAPGAELLLLQNGLGS-----QDAVAAR--VPHARCIFA 125 (305)
T ss_pred EECC---------------HHh-HHHHHHHHHhhCCCCCEEEEEeCCCCC-----HHHHHHh--CCCCcEEEE
Confidence 9942 111 234555666665 89999889999883 2334444 667777765
No 136
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.27 E-value=0.00099 Score=58.08 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=55.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..+||+|||+ |.||.+++..|...|+ +|.-+-.... .-+.++.+. .+. .. ..++.+.++++|+||++.
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs~-~sa~~a~~~-~~~-~~----~~~~~~~~~~aDlv~iav-- 76 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRSP-ASAERAAAF-IGA-GA----ILDLEEILRDADLVFIAV-- 76 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCHH--HHHHHHC---TT----------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCc-ccccccccc-ccc-cc----ccccccccccCCEEEEEe--
Confidence 3589999998 9999999999999998 7766543321 111222221 111 11 123456789999999994
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhh--C-CCeEEEEEc--CCCCCcHHH
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADN--C-PDAFIHIIS--NPVNSTVPI 219 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~--~-p~aiviv~T--NPv~~~~pI 219 (412)
.. ..+.++++++.++ . |+.+|+=.| -+++++-|+
T Consensus 77 ------------pD--daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 77 ------------PD--DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp -------------C--CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ------------ch--HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 21 2457788888876 3 555553332 345544443
No 137
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.26 E-value=0.002 Score=63.86 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=56.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIiaag 170 (412)
|||+|||. |.||..++..|+..|. +|.+||.++... .++.+.. .. ...++++.++ ++|+||++..
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~---~~~~~~e~~~~~~~~dvvi~~v~ 68 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAV--EALAEEG----AT---GADSLEELVAKLPAPRVVWLMVP 68 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHCC----Ce---ecCCHHHHHhhcCCCCEEEEEec
Confidence 58999998 9999999999999998 999999986321 1222211 11 1234444444 4799999832
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN 211 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN 211 (412)
. ...++++...+.... ++.++|..|+
T Consensus 69 ~---------------~~~~~~v~~~l~~~l~~g~ivid~st 95 (301)
T PRK09599 69 A---------------GEITDATIDELAPLLSPGDIVIDGGN 95 (301)
T ss_pred C---------------CcHHHHHHHHHHhhCCCCCEEEeCCC
Confidence 1 123333444554444 5667666554
No 138
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.24 E-value=0.002 Score=64.39 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=76.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhh---hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVA---ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~---~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|+|+ |.||+.+++.|+..|. .|.++-.++ ....- ..+.+.......... .+++ .+.+..+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEEe
Confidence 79999998 9999999999999994 677776654 11111 112221111011111 1223 34688999999994
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCCCcHHHHHHHHHHhCCCCCCCeE-eccccc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLF-GVTTLD 242 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~~~~pI~t~i~~~~sg~~~~kvi-Glt~Ld 242 (412)
- .--..+..+.+..+. |+++|+..=|=.+ - -+...+. ++.++|+ |+|...
T Consensus 76 K----------------a~q~~~al~~l~~~~~~~t~vl~lqNG~g----~-~e~l~~~--~~~~~il~G~~~~~ 127 (307)
T COG1893 76 K----------------AYQLEEALPSLAPLLGPNTVVLFLQNGLG----H-EEELRKI--LPKETVLGGVTTHG 127 (307)
T ss_pred c----------------cccHHHHHHHhhhcCCCCcEEEEEeCCCc----H-HHHHHHh--CCcceEEEEEeeee
Confidence 2 223356777777777 7888888889888 2 3445555 5666555 576533
No 139
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0023 Score=62.25 Aligned_cols=101 Identities=23% Similarity=0.238 Sum_probs=68.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCC-cEEEEcCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGV-NVVVIPAGVP 172 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a-DiVIiaag~p 172 (412)
|+|.|+||+|++|..++..|...|. +|+.+|.......... .+.. ....+++......+.++++ |.||.+++..
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~--~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE--FVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc--eeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 3599999999999999999999998 9999998652111111 1111 0011111112233455666 9999998876
Q ss_pred CCCCCch---hhHHHhhHHHHHHHHHHHHh
Q 015172 173 RKPGMTR---DDLFNINANIVKTLVEAVAD 199 (412)
Q Consensus 173 ~k~g~~r---~dl~~~N~~i~~~i~~~i~~ 199 (412)
..++..+ .++...|+...+++++...+
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~ 105 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARA 105 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555433 35788999999999999998
No 140
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.23 E-value=0.0053 Score=58.50 Aligned_cols=98 Identities=10% Similarity=0.190 Sum_probs=59.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||+|||+ |.||..++..++..+. ..+++++|.+.. ....++.+. .. +. .+.|+++.++++|+||++..
T Consensus 4 ~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~-~~--~~---~~~~~~~~~~~~DiViiavp 75 (245)
T PRK07634 4 KHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQAR-YN--VS---TTTDWKQHVTSVDTIVLAMP 75 (245)
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHH-cC--cE---EeCChHHHHhcCCEEEEecC
Confidence 478999998 9999999998887753 234777776421 111222221 11 11 13466678899999999931
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
-...+++++++..+.++.+||-++.-.+
T Consensus 76 ----------------~~~~~~v~~~l~~~~~~~~vis~~~gi~ 103 (245)
T PRK07634 76 ----------------PSAHEELLAELSPLLSNQLVVTVAAGIG 103 (245)
T ss_pred ----------------HHHHHHHHHHHHhhccCCEEEEECCCCC
Confidence 1233455555555444556655565555
No 141
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=97.22 E-value=0.0038 Score=61.73 Aligned_cols=107 Identities=15% Similarity=0.101 Sum_probs=68.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcc-cCCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSH-CNTPSQV----LDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~-~~~~~~v----~~i~~t~d~~~al~~aDiVI 166 (412)
.++|.|+||+|++|+.++..|+..|. +|++.+++... .....+.. ......+ .+++-..++++.++++|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 47899999999999999999999998 88888766421 11111111 1100111 12332344566788999999
Q ss_pred EcCCCCCCC-CC-chhhHHHhhHHHHHHHHHHHHhhC
Q 015172 167 IPAGVPRKP-GM-TRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 167 iaag~p~k~-g~-~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.+||..... .. .....+..|+.....+.+.+.++.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~ 119 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVS 119 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999854211 11 123456778888888888887754
No 142
>PLN02583 cinnamoyl-CoA reductase
Probab=97.20 E-value=0.0036 Score=61.56 Aligned_cols=107 Identities=19% Similarity=0.121 Sum_probs=68.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhhcccCCC--CceeeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCNTP--SQVLDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL~~~~~~--~~v~~i~~t~d~~~al~~aDiVI 166 (412)
.++|.|+||+|++|..++..|+.+|. +|++.+.+.. .....++...... ....+++-..++.+++.++|.|+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~ 83 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF 83 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence 35799999999999999999999998 9998877431 1111222111101 11113332344567899999998
Q ss_pred EcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 167 IPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 167 iaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
..++.+........+++..|+.-...+.+.+.+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~ 118 (297)
T PLN02583 84 CCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD 118 (297)
T ss_pred EeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 76654422111234567788888888998887753
No 143
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=97.19 E-value=0.0026 Score=64.79 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=70.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 90 PQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 90 ~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
+...|||.|+||+|++|+.++..|...|. +|+.+|..... ...+... .......++....++.+.++++|+||.+|
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~~~~~-~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMSEDMF-CHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-ccccccc-cceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 34568999999999999999999999998 99999975310 0000000 00011112221123444578999999998
Q ss_pred CCCCCCC---CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 170 GVPRKPG---MTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 170 g~p~k~g---~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
+.....+ ......+..|+.....+++.+.+....-+|
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V 133 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF 133 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 6432111 122334567888888899988776544444
No 144
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.18 E-value=0.0016 Score=64.57 Aligned_cols=91 Identities=12% Similarity=0.175 Sum_probs=58.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCC---CcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKG---VNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~---aDiVIiaag 170 (412)
|||+|||. |.||..++..+...|. +|++||.++.+. ..+.+.. .. ...++++.+++ +|+||++..
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~---~~~s~~~~~~~~~~advVi~~vp 68 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----IT---ARHSLEELVSKLEAPRTIWVMVP 68 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Ce---ecCCHHHHHHhCCCCCEEEEEec
Confidence 58999998 9999999999999998 999999976321 1222211 11 12455555554 699999842
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISN 211 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN 211 (412)
. -+.+++++..+.... ++.++|..|+
T Consensus 69 ~---------------~~~~~~v~~~i~~~l~~g~ivid~st 95 (299)
T PRK12490 69 A---------------GEVTESVIKDLYPLLSPGDIVVDGGN 95 (299)
T ss_pred C---------------chHHHHHHHHHhccCCCCCEEEECCC
Confidence 1 123444445555544 6777766653
No 145
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=97.17 E-value=0.0024 Score=61.48 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=66.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP 175 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~ 175 (412)
|.|+||+|++|..++..|+..|. +|+.++++...... +... .+..+.+ .+..+.++++|+||.+++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 56999999999999999999998 99999987521110 0000 0111222 22345789999999999876432
Q ss_pred CC----chhhHHHhhHHHHHHHHHHHHhhCC
Q 015172 176 GM----TRDDLFNINANIVKTLVEAVADNCP 202 (412)
Q Consensus 176 g~----~r~dl~~~N~~i~~~i~~~i~~~~p 202 (412)
+. ...++...|+...+.+.+.+.+...
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 21 2344566788999999999987653
No 146
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=97.16 E-value=0.0043 Score=61.32 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=66.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc-CCCCce----eeecCCCcHHhhcCCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC-NTPSQV----LDFTGPEELASALKGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~-~~~~~v----~~i~~t~d~~~al~~aDiVI 166 (412)
.++|.|+||+|++|++++..|+..|. +|++...+.. ......+... .....+ .+++...++.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 36899999999999999999999998 8886655431 1111112110 001111 12222344666788999999
Q ss_pred EcCCCCCC-CCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172 167 IPAGVPRK-PGMTRDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 167 iaag~p~k-~g~~r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
.+|+.... ......+++..|+.....+.+.+.+.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 99875321 11122345667888888888887764
No 147
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=97.16 E-value=0.0045 Score=62.19 Aligned_cols=106 Identities=15% Similarity=0.095 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh--hhhhhcccC-CCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG--VAADLSHCN-TPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g--~~~dL~~~~-~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.|||.|+||+|++|+.++..|+..|. +|++.|.+.... ...++.... ......+++-..++.+.+++.|+||.+|
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 47999999999999999999999998 899888764211 111121110 0000112221233556678899999999
Q ss_pred CCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHhh
Q 015172 170 GVPRKP---G-MTRDD-----LFNINANIVKTLVEAVADN 200 (412)
Q Consensus 170 g~p~k~---g-~~r~d-----l~~~N~~i~~~i~~~i~~~ 200 (412)
+..... . .+..+ .+..|+.....+.+.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~ 127 (353)
T PLN02896 88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKS 127 (353)
T ss_pred ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhc
Confidence 864311 1 11222 2223346667777777665
No 148
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=97.16 E-value=0.0035 Score=62.85 Aligned_cols=116 Identities=18% Similarity=0.075 Sum_probs=70.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhh-hhccc-CCCCceeeecCCCcHHhhcCC--CcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAA-DLSHC-NTPSQVLDFTGPEELASALKG--VNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~-dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIi 167 (412)
.++|.|+||+|++|+.++..|+..|. +|+.+|.+... .... .+... .......+++...++.+.+++ .|+||.
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 47899999999999999999999998 89999986521 1111 11110 011111122222334444554 599999
Q ss_pred cCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 168 PAGVPRKP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 168 aag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
+++.+... ..+....+..|+.....+++.+.+......++.+|
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~S 126 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVT 126 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99854321 12234556778888888888887654223444444
No 149
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.15 E-value=0.0023 Score=70.14 Aligned_cols=107 Identities=14% Similarity=0.083 Sum_probs=70.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhc-ccCCCCceeeecCCCc-HHhhcCCCcEEEE
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLS-HCNTPSQVLDFTGPEE-LASALKGVNVVVI 167 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~-~~~~~~~v~~i~~t~d-~~~al~~aDiVIi 167 (412)
+++|||.|+||+|++|++++..|+.. |. +|+.+|.+..... ++. +........+++...+ .+++++++|+||.
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViH 388 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLP 388 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCCCceEEEeccccCcHHHHHHHhcCCCEEEE
Confidence 56789999999999999999999875 67 9999998652100 111 1111110112211111 3456889999999
Q ss_pred cCCCCC--CCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 168 PAGVPR--KPGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 168 aag~p~--k~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
+|+... ....+..+++..|+....++.+.+.++.
T Consensus 389 lAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~ 424 (660)
T PRK08125 389 LVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN 424 (660)
T ss_pred CccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC
Confidence 887543 2223445667788888888999988865
No 150
>PLN02572 UDP-sulfoquinovose synthase
Probab=97.13 E-value=0.0029 Score=66.20 Aligned_cols=176 Identities=16% Similarity=0.128 Sum_probs=93.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hh------------hhhhhc---c---cCCCCceeee
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KG------------VAADLS---H---CNTPSQVLDF 149 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g------------~~~dL~---~---~~~~~~v~~i 149 (412)
.+++||.|+||+|++|++++..|+..|. +|+++|.... .. ....+. + ........++
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 5578999999999999999999999998 9999985320 00 000010 0 0111101122
Q ss_pred cCCCcHHhhcC--CCcEEEEcCCCCCCCC--Cch---hhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC-CC--CcHHH
Q 015172 150 TGPEELASALK--GVNVVVIPAGVPRKPG--MTR---DDLFNINANIVKTLVEAVADNCPDAFIHIISNP-VN--STVPI 219 (412)
Q Consensus 150 ~~t~d~~~al~--~aDiVIiaag~p~k~g--~~r---~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP-v~--~~~pI 219 (412)
....++.++++ ++|+||.+|+....+- .+. ...+..|+.....+++.+.++.....|+.+|-. +- ...|+
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 22223444555 5899999986532211 111 223457999999999998887654444433311 00 00001
Q ss_pred HHHH-------HHHh---CCCCCCCeEeccccchHHHHHHHHHHcCCCCCCee-eeEEccc
Q 015172 220 AAEV-------LKQK---GVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD-VPVVGGH 269 (412)
Q Consensus 220 ~t~i-------~~~~---sg~~~~kviGlt~Lds~R~~~~la~~l~v~~~~V~-~~ViG~h 269 (412)
.+- .... ....|....|.+=+-...+-...++..|++.--++ ..|+|.+
T Consensus 203 -~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~ 262 (442)
T PLN02572 203 -EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 262 (442)
T ss_pred -cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 000 0000 01234455666432223344445666787766666 4577765
No 151
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.12 E-value=0.0042 Score=60.31 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCC--eEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVS--ALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~--ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|||+|||+ |.||+.++..+...+... +++.+|.+... + . .. ...+..+.++++|+||++.
T Consensus 4 mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-----~--~~---~~~~~~~~~~~~D~Vilav-- 65 (260)
T PTZ00431 4 IRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-----P--FV---YLQSNEELAKTCDIIVLAV-- 65 (260)
T ss_pred CEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-----C--eE---EeCChHHHHHhCCEEEEEe--
Confidence 79999998 999999999999887432 48888876421 0 0 11 1234445678999999983
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
| ...+.++.+++..+.++..+|...+-++
T Consensus 66 k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 1 2445566666665544345556666666
No 152
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.11 E-value=0.0031 Score=57.70 Aligned_cols=33 Identities=39% Similarity=0.619 Sum_probs=30.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6999998 9999999999999996 6899999985
No 153
>PLN02778 3,5-epimerase/4-reductase
Probab=97.09 E-value=0.0076 Score=59.54 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=62.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
...|||.|+||+|++|++++..|..+|. +|++...+ +.+. ..+ ..++.+ .++|+||.+|+
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~------~~v--~~~l~~--~~~D~ViH~Aa 66 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENR------ASL--EADIDA--VKPTHVFNAAG 66 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCH------HHH--HHHHHh--cCCCEEEECCc
Confidence 3458999999999999999999999998 77654221 1110 001 012221 37899999998
Q ss_pred CCCCCC-----CchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172 171 VPRKPG-----MTRDDLFNINANIVKTLVEAVADNCP 202 (412)
Q Consensus 171 ~p~k~g-----~~r~dl~~~N~~i~~~i~~~i~~~~p 202 (412)
....+. .+..+.+..|......+++.+++...
T Consensus 67 ~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv 103 (298)
T PLN02778 67 VTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL 103 (298)
T ss_pred ccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 643222 23456678899988899999887653
No 154
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.08 E-value=0.0027 Score=61.72 Aligned_cols=116 Identities=22% Similarity=0.120 Sum_probs=69.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhccc-CCCCceeeecCCCcHHhhcCC--CcEEEEc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHC-NTPSQVLDFTGPEELASALKG--VNVVVIP 168 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~--aDiVIia 168 (412)
||.|+||+|++|..++..|+..+...+|+++|.... .....++... .......+++-..++.+++++ +|+||.+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 589999999999999998888762238999886431 1111122111 000001122222345556776 8999999
Q ss_pred CCCCCC--CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 169 AGVPRK--PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 169 ag~p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
++.... ........+..|......+++.+.+...+..++.+|
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~S 124 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHIS 124 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence 875321 112334456778888888998888765454455444
No 155
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.03 E-value=0.0025 Score=62.93 Aligned_cols=75 Identities=28% Similarity=0.379 Sum_probs=52.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc--
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP-- 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia-- 168 (412)
.+||.|||+ |.+|..+++.|+..|. .+|.++|++. +++.+.++.+.. +. .. +....++.+.++++|+||.+
T Consensus 127 ~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~-~~-~~-~~~~~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 127 LERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF-PA-AR-ATAGSDLAAALAAADGLVHATP 201 (284)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC-CC-eE-EEeccchHhhhCCCCEEEECCc
Confidence 468999998 9999999999999995 6899999986 344444554332 11 11 12223444568999999998
Q ss_pred CCCC
Q 015172 169 AGVP 172 (412)
Q Consensus 169 ag~p 172 (412)
+|.+
T Consensus 202 ~Gm~ 205 (284)
T PRK12549 202 TGMA 205 (284)
T ss_pred CCCC
Confidence 4543
No 156
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.03 E-value=0.011 Score=63.00 Aligned_cols=121 Identities=21% Similarity=0.276 Sum_probs=83.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCcee----eecCCCcHHhhcCC--CcE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVL----DFTGPEELASALKG--VNV 164 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~----~i~~t~d~~~al~~--aDi 164 (412)
.+.|-|.||+|++|+.+...++..+. .+|+++|.++. .....+|.+......+. ++........++++ .|+
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~ 328 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI 328 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence 56899999999999999999988864 59999999982 22233444421111121 22212334567888 999
Q ss_pred EEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc----CCCC
Q 015172 165 VVIPAGVPRKPGM--TRDDLFNINANIVKTLVEAVADNCPDAFIHIIS----NPVN 214 (412)
Q Consensus 165 VIiaag~p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T----NPv~ 214 (412)
|+.+|....-|-+ +-.+-+..|+---+++++...++.=+.++++-| ||.|
T Consensus 329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtN 384 (588)
T COG1086 329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTN 384 (588)
T ss_pred EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCch
Confidence 9999987666654 345668889888899999988877555555543 6666
No 157
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.03 E-value=0.0075 Score=58.86 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=44.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|||. |.||..++..+...|+..+|+.+|+++... ..+.+... . . ...++++ +.+||+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~--~~~~~~g~---~-~--~~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHL--KKALELGL---V-D--EIVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHH--HHHHHCCC---C-c--ccCCHHH-HhcCCEEEEeC
Confidence 58999998 999999999999888644789999876211 11111111 1 0 1124554 45699999994
No 158
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.02 E-value=0.0015 Score=56.03 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=58.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhc--ccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLS--HCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~--~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
||+|+||+|++|..+...|...+.+.-+.+++.....+....-. +......+. +.. .+.+ .+.++|+||.+.+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~Dvvf~a~~-- 75 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLS-VED-ADPE-ELSDVDVVFLALP-- 75 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEB-EEE-TSGH-HHTTESEEEE-SC--
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhcccccccccee-Eee-cchh-HhhcCCEEEecCc--
Confidence 79999999999999999999987666667777665222211111 111111121 111 2444 6899999999942
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
....+++.+.+.+ .+.++ +.+..+
T Consensus 76 --------------~~~~~~~~~~~~~--~g~~V--iD~s~~ 99 (121)
T PF01118_consen 76 --------------HGASKELAPKLLK--AGIKV--IDLSGD 99 (121)
T ss_dssp --------------HHHHHHHHHHHHH--TTSEE--EESSST
T ss_pred --------------hhHHHHHHHHHhh--CCcEE--EeCCHH
Confidence 3455666666633 34455 666665
No 159
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.02 E-value=0.0056 Score=62.96 Aligned_cols=110 Identities=18% Similarity=0.104 Sum_probs=66.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh----hhhhhcc--cCCCCceeeecCCCcHHhhcC--
Q 015172 89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG----VAADLSH--CNTPSQVLDFTGPEELASALK-- 160 (412)
Q Consensus 89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g----~~~dL~~--~~~~~~v~~i~~t~d~~~al~-- 160 (412)
.....+||.|+||+|++|..++..|+.+|. +|++++.+.... ...++.. ........+++-..++.+.++
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 334568999999999999999999999998 999999875210 0111111 111111112322233444555
Q ss_pred --CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCC
Q 015172 161 --GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPD 203 (412)
Q Consensus 161 --~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~ 203 (412)
++|+||.+++.+... ..+.+..|......+++.+++..-.
T Consensus 134 ~~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~ 175 (390)
T PLN02657 134 GDPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK 175 (390)
T ss_pred CCCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC
Confidence 599999987753211 1123455677777788887766533
No 160
>PLN02712 arogenate dehydrogenase
Probab=97.01 E-value=0.015 Score=64.03 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=59.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-CCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-KGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-~~aDiVIiaa 169 (412)
.+++||+|||. |.||..++..+...|. +|..+|.+.....+.++ . +.. .+++++.+ ++||+||++.
T Consensus 50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~---~~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSF---FLDPHDLCERHPDVILLCT 116 (667)
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEE---eCCHHHHhhcCCCEEEEcC
Confidence 44679999998 9999999999998887 89999987422122111 1 111 23555534 5799999993
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHH-hhC-CCeEEEEEc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVA-DNC-PDAFIHIIS 210 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~-~~~-p~aiviv~T 210 (412)
| ...+.++++++. .+. |+++|+-++
T Consensus 117 --P--------------~~~~~~vl~~l~~~~l~~g~iVvDv~ 143 (667)
T PLN02712 117 --S--------------IISTENVLKSLPLQRLKRNTLFVDVL 143 (667)
T ss_pred --C--------------HHHHHHHHHhhhhhcCCCCeEEEECC
Confidence 1 123455555554 334 678776665
No 161
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.00 E-value=0.0057 Score=61.16 Aligned_cols=106 Identities=13% Similarity=0.015 Sum_probs=64.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcc-------cCCCCceeeecCCCcHHhhcCC--
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSH-------CNTPSQVLDFTGPEELASALKG-- 161 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~-------~~~~~~v~~i~~t~d~~~al~~-- 161 (412)
+||.|+||+|++|+.++..|+..|. +|+++|.+.. ......+.. ........+++...++.+.+++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999998 9999998641 111111110 0011111133222234455664
Q ss_pred CcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 162 VNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 162 aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
+|+||.+|+....+. ......+..|+.-...+++.+.+..
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~ 120 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLG 120 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 699999998643221 1123334556666677888877654
No 162
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.97 E-value=0.0062 Score=60.95 Aligned_cols=92 Identities=20% Similarity=0.288 Sum_probs=60.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||. |.||..+|..+...|. +|..||...... . . ...+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~-----~----~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--P-----G----VQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--C-----C----ceeecccccHHHHHhcCCEEEECCCC
Confidence 4579999998 9999999999998898 999999753110 0 0 11111234677899999999998421
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
. .++..++. .+.+.+.-|++++|+++
T Consensus 201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 1 12222322 22333334899999885
No 163
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.97 E-value=0.0023 Score=56.03 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=51.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
..||.|||| |.+|..+++.|...|. .+|.+++++.. ...+..+. ...+..+ ..+++.+.+.++|+||.+.+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~----~~~~~~~-~~~~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFG----GVNIEAI-PLEDLEEALQEADIVINATP 84 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHT----GCSEEEE-EGGGHCHHHHTESEEEE-SS
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcC----cccccee-eHHHHHHHHhhCCeEEEecC
Confidence 479999998 9999999999999985 57999999762 33333331 1112222 23456567899999999976
Q ss_pred CCC
Q 015172 171 VPR 173 (412)
Q Consensus 171 ~p~ 173 (412)
.+.
T Consensus 85 ~~~ 87 (135)
T PF01488_consen 85 SGM 87 (135)
T ss_dssp TTS
T ss_pred CCC
Confidence 553
No 164
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.009 Score=59.14 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCCCceeeecCCCcHHhhc--CCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTPSQVLDFTGPEELASAL--KGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~~~v~~i~~t~d~~~al--~~aDiVIiaag 170 (412)
|+|.|.|++|++|++.+..|+..|. +|+.+|... ....+.+-... +....++.-..-+.+.| ...|.||..|+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~--~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQF--KFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccC--ceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 6899999999999999999999999 999999865 21111111000 10011111000111112 47889999887
Q ss_pred CCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE-----EcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccch
Q 015172 171 VPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHI-----ISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDV 243 (412)
Q Consensus 171 ~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv-----~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds 243 (412)
.-.-+. +.-+.+...|+---..+.+.+.++..+-+|+- +.+|.. +|| +| .....|.+-.|-+-|-+
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~--~PI-~E----~~~~~p~NPYG~sKlm~ 149 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTT--SPI-SE----TSPLAPINPYGRSKLMS 149 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCC--ccc-CC----CCCCCCCCcchhHHHHH
Confidence 543221 23456678888888999999999987666632 345655 676 43 22355788888886666
Q ss_pred HHHHHHHHHHcCCCC
Q 015172 244 VRANTFVAQKKNLKL 258 (412)
Q Consensus 244 ~R~~~~la~~l~v~~ 258 (412)
.++-+.+++..++..
T Consensus 150 E~iL~d~~~a~~~~~ 164 (329)
T COG1087 150 EEILRDAAKANPFKV 164 (329)
T ss_pred HHHHHHHHHhCCCcE
Confidence 777777777777544
No 165
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.94 E-value=0.012 Score=65.43 Aligned_cols=93 Identities=22% Similarity=0.277 Sum_probs=62.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
.+||+|||+ |.||..++..+...|+..+|..+|.++.. ..+.++ .. .. ...+++.++++++|+||++..
T Consensus 3 ~~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~--~~---~~~~~~~~~~~~aDvVilavp- 72 (735)
T PRK14806 3 FGRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GV--ID---RGEEDLAEAVSGADVIVLAVP- 72 (735)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CC--CC---cccCCHHHHhcCCCEEEECCC-
Confidence 368999998 99999999999988854479999998622 122111 11 00 123466677899999999943
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
...+.++++.+.++. ++.+|+.++
T Consensus 73 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 73 ---------------VLAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred ---------------HHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 124566667777665 566665444
No 166
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.93 E-value=0.0028 Score=67.21 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC---CCcEEEEc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK---GVNVVVIP 168 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~---~aDiVIia 168 (412)
..++|++||- |.||.++|..|+..|+ +|+.||++..+.. ++.+.........+....++++..+ .+|+||+.
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~~--~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVD--ETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHHH--HHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEE
Confidence 3568999998 9999999999999999 9999999763221 2222100000001122344554444 59999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCC
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNP 212 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNP 212 (412)
.. +-+.++++...+.... |+.++|-.||-
T Consensus 80 v~---------------~~~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 80 VK---------------AGAPVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred CC---------------CcHHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 42 2244455545555555 77788777764
No 167
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=96.91 E-value=0.0047 Score=61.75 Aligned_cols=106 Identities=21% Similarity=0.159 Sum_probs=65.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh---hhhhhcc-cCCCCceeeecCCCcHHhhcC--CCcEEEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG---VAADLSH-CNTPSQVLDFTGPEELASALK--GVNVVVI 167 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g---~~~dL~~-~~~~~~v~~i~~t~d~~~al~--~aDiVIi 167 (412)
|||.|+||+|++|+.++..|+..|. ..++.+|.....+ ...++.. ........+++-..++.++++ ++|+||.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999998885 2466677542111 1111111 000011113322234445554 4899999
Q ss_pred cCCCCCC--CCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172 168 PAGVPRK--PGMTRDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 168 aag~p~k--~g~~r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
+|+.... +.....+.+..|+.....+++.+.++
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~ 114 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNY 114 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHh
Confidence 9986431 11233556788898889898888765
No 168
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.91 E-value=0.0041 Score=62.66 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=47.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
-+.+||+|||. |.||..+|..|...|+ +|+..|....... +.... .. +. . .+.++++++||+|+++.
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~--~~A~~-~G--~~---~-~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSW--KKAEA-DG--FE---V-LTVAEAAKWADVIMILL 81 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhH--HHHHH-CC--Ce---e-CCHHHHHhcCCEEEEcC
Confidence 34578999998 9999999999999998 8988877642111 11111 01 11 1 25667899999999994
No 169
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.90 E-value=0.0057 Score=62.62 Aligned_cols=80 Identities=21% Similarity=0.329 Sum_probs=54.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
.+||+|||.+|.||+.+|..+... +. +|+-+|.+. . ..++.++.+++||+||++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~--~V~g~D~~d----------~----------~~~~~~~~v~~aDlVilav-- 59 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQL--EVIGHDPAD----------P----------GSLDPATLLQRADVLIFSA-- 59 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCC--EEEEEcCCc----------c----------ccCCHHHHhcCCCEEEEeC--
Confidence 369999998899999999999875 55 899998731 0 1234556799999999994
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
| +..+.++++++.+......|+++|
T Consensus 60 P----------v~~~~~~l~~l~~~~~~l~~~~iV 84 (370)
T PRK08818 60 P----------IRHTAALIEEYVALAGGRAAGQLW 84 (370)
T ss_pred C----------HHHHHHHHHHHhhhhcCCCCCeEE
Confidence 3 444455555554432112367776
No 170
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0057 Score=58.31 Aligned_cols=35 Identities=31% Similarity=0.464 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|+++.|+||+|.+|..++..++..|. +|+++|.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINE 35 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 35799999999999999999999998 999999875
No 171
>PRK06194 hypothetical protein; Provisional
Probab=96.87 E-value=0.012 Score=56.83 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=49.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHhhc-------CC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELASAL-------KG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~al-------~~ 161 (412)
.++|.|+||+|++|..++..|+..|. +|++.|.+. ......++........ + .+++...+.++.+ ..
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 36799999999999999999999998 999999875 2222333322111100 0 1121111222222 25
Q ss_pred CcEEEEcCCCCC
Q 015172 162 VNVVVIPAGVPR 173 (412)
Q Consensus 162 aDiVIiaag~p~ 173 (412)
.|+||..+|...
T Consensus 84 id~vi~~Ag~~~ 95 (287)
T PRK06194 84 VHLLFNNAGVGA 95 (287)
T ss_pred CCEEEECCCCCC
Confidence 799999998743
No 172
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.86 E-value=0.0037 Score=61.84 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=46.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|||. |.||..++..+...|+ +|.++|+++. ..++.... . . ...+..++.++||+||++.
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g--~--~---~~~s~~~~~~~advVi~~v 63 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG--A--V---SVETARQVTEASDIIFIMV 63 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC--C--e---ecCCHHHHHhcCCEEEEeC
Confidence 58999998 9999999999999998 9999998752 12232211 1 1 1234556789999999994
No 173
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=96.85 E-value=0.0011 Score=65.59 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=54.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-C-CCCeEEEEecCchhhhh-----hhhcccCCC-----C-ceeeecCCCcHHhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-P-LVSALHLYDVMNVKGVA-----ADLSHCNTP-----S-QVLDFTGPEELASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-g-l~~ev~L~Di~~~~g~~-----~dL~~~~~~-----~-~v~~i~~t~d~~~al 159 (412)
++||+-||| |+||.+....++.+ + + +|.++|++..+-.+ +.+++.+.. + ..+.| .++|.++++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i--~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlf-fstdiekai 76 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDI--EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLF-FSTDIEKAI 76 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCce--EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCcee-eecchHHHh
Confidence 479999998 99999887777665 4 5 99999998622111 122222210 1 12223 468899999
Q ss_pred CCCcEEEEcCCCCCCC
Q 015172 160 KGVNVVVIPAGVPRKP 175 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~ 175 (412)
+.+|+|++.+..|.|.
T Consensus 77 ~eadlvfisvntptkt 92 (481)
T KOG2666|consen 77 KEADLVFISVNTPTKT 92 (481)
T ss_pred hhcceEEEEecCCccc
Confidence 9999999999888653
No 174
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.85 E-value=0.0048 Score=58.35 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||+|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 358999998 9999999999999996 6899999984
No 175
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=96.81 E-value=0.0063 Score=60.66 Aligned_cols=107 Identities=15% Similarity=-0.001 Sum_probs=65.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcc---c---CCCCceeeecCCCcHHhhcCC--
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSH---C---NTPSQVLDFTGPEELASALKG-- 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~---~---~~~~~v~~i~~t~d~~~al~~-- 161 (412)
.++|.|+||+|++|+.++..|+..|. +|+++|.+.. ......+.. . .......+++-..++.+.+++
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 46899999999999999999999998 9999987541 111111111 0 001111122222234445554
Q ss_pred CcEEEEcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 162 VNVVVIPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 162 aDiVIiaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.|+||.+|+...... ......+..|+.-...+++.+.++.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~ 125 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHG 125 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhc
Confidence 699999998643221 1223334667777788888887766
No 176
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.81 E-value=0.0037 Score=65.94 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=61.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
+|+|||. |.||.++|..|+..|+ +|++||++..+. .++... .....+.......++.+.++++|+||++...
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~~--~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~-- 73 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEKT--DEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA-- 73 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHHH--HHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence 4899998 9999999999999998 999999986321 122211 0000011111112333345789999988421
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPV 213 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv 213 (412)
-+.+.+++..+..+. ++.+||-.+|..
T Consensus 74 -------------~~~v~~Vi~~l~~~L~~g~iIID~gns~ 101 (467)
T TIGR00873 74 -------------GAPVDAVINQLLPLLEKGDIIIDGGNSH 101 (467)
T ss_pred -------------cHHHHHHHHHHHhhCCCCCEEEECCCcC
Confidence 133444556666665 778888887743
No 177
>PLN02712 arogenate dehydrogenase
Probab=96.81 E-value=0.014 Score=64.30 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=59.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC-CCcEEEE
Q 015172 89 QPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK-GVNVVVI 167 (412)
Q Consensus 89 ~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~-~aDiVIi 167 (412)
.....+||+|||. |.||..+|..+...|. +|+.+|.+.....+.+ .. +. ..+++++.+. ++|+||+
T Consensus 365 ~~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~---~~~~~~el~~~~aDvVIL 431 (667)
T PLN02712 365 NDGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VS---YFSDADDLCEEHPEVILL 431 (667)
T ss_pred CCCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----Ce---EeCCHHHHHhcCCCEEEE
Confidence 3345689999998 9999999999998887 8999998752111111 11 11 1245655554 5999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHh-hC-CCeEEEEEcC
Q 015172 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVAD-NC-PDAFIHIISN 211 (412)
Q Consensus 168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~-~~-p~aiviv~TN 211 (412)
+.- .....++++++.. .. |+++++-++.
T Consensus 432 avP----------------~~~~~~vi~~l~~~~lk~g~ivvDv~S 461 (667)
T PLN02712 432 CTS----------------ILSTEKVLKSLPFQRLKRSTLFVDVLS 461 (667)
T ss_pred CCC----------------hHHHHHHHHHHHHhcCCCCcEEEECCC
Confidence 942 1233344444443 34 6788765543
No 178
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.78 E-value=0.0065 Score=56.15 Aligned_cols=107 Identities=19% Similarity=0.182 Sum_probs=64.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||+||||+|.+|+.++..+..+|+ ||+-+=.+..+-.+. ... +-. -.++.--+.+++++++-|+||-+-|.+.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~-~i~-q~Difd~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGV-TIL-QKDIFDLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccc-eee-cccccChhhhHhhhcCCceEEEeccCCC
Confidence 7999999999999999999999999 999887776321110 000 000 0122222344568999999999977653
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV 213 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv 213 (412)
++.. ..-.+-.+.+...++.. -...++|+.--.
T Consensus 75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVGGAG 107 (211)
T COG2910 75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVGGAG 107 (211)
T ss_pred -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEcCcc
Confidence 2211 11122344555555542 344555665443
No 179
>PRK13243 glyoxylate reductase; Reviewed
Probab=96.78 E-value=0.0054 Score=61.90 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=46.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||..+|..+...|. +|..||......... .. . .. ..++++.+++||+|+++.
T Consensus 149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~---~--~~----~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL---G--AE----YRPLEELLRESDFVSLHV 212 (333)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc---C--CE----ecCHHHHHhhCCEEEEeC
Confidence 3579999998 9999999999988888 999999864211110 00 0 11 135777899999999985
No 180
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.78 E-value=0.0076 Score=58.22 Aligned_cols=88 Identities=24% Similarity=0.350 Sum_probs=61.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCC--cEEEEcCCCC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGV--NVVVIPAGVP 172 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a--DiVIiaag~p 172 (412)
||.|+||+|++|+.++..|...|. +|++++... .|+.+ ..++.++++++ |+||.+++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999999998 999987641 12211 12334456655 9999998864
Q ss_pred CCCC--CchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 173 RKPG--MTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 173 ~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
..+. .........|+.....+++.+.+..
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 92 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHG 92 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3221 2334456778888888888877654
No 181
>PLN02240 UDP-glucose 4-epimerase
Probab=96.77 E-value=0.012 Score=58.69 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=67.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hh---hhhhhhccc-C--CCCceeeecCCCcHHhhcC--CC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VK---GVAADLSHC-N--TPSQVLDFTGPEELASALK--GV 162 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~---g~~~dL~~~-~--~~~~v~~i~~t~d~~~al~--~a 162 (412)
.+||.|+||+|++|..++..|+..|. +|+++|... .. ....++... . ......+++-..++.+.++ ++
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 36899999999999999999999997 999998643 11 111111110 0 0000112221223333343 68
Q ss_pred cEEEEcCCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHhhCCCeE
Q 015172 163 NVVVIPAGVPRK-PG-MTRDDLFNINANIVKTLVEAVADNCPDAF 205 (412)
Q Consensus 163 DiVIiaag~p~k-~g-~~r~dl~~~N~~i~~~i~~~i~~~~p~ai 205 (412)
|+||.+++.... +. ....+.+..|+.....+++.+.+.....+
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 127 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKL 127 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999886421 11 23345678888888888888776543333
No 182
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.0073 Score=56.95 Aligned_cols=115 Identities=18% Similarity=0.244 Sum_probs=64.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG 161 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~ 161 (412)
++|.|+||+|++|..++..|+..|. +|++.+.+.. .....++....... ...+++-..+..+ .+.+
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5799999999999999999999998 8999887641 11122222211100 0012211112221 2246
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
.|+||..+|.......+..+.+..|......+++.+.++. .++.++++|
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 8999999875422222222334456655566666666654 344454443
No 183
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=96.72 E-value=0.0077 Score=59.31 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=60.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGV 171 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~ 171 (412)
|||.|+||+|++|++++..|...| +|+.+|..... . ..+++....+.+.++ ++|+||.+|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-~------------~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-Y------------CGDFSNPEGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-c------------cCCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence 689999999999999999888877 47777764210 0 011111122334455 58999999875
Q ss_pred CCCC--CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 172 PRKP--GMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 172 p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.... ..........|+.....+++.+++..
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g 96 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG 96 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4211 12223334678888889998888764
No 184
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.72 E-value=0.0034 Score=63.26 Aligned_cols=63 Identities=24% Similarity=0.368 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||..+|..++. .|. +|..+|....... .. .+ ...+++++.+++||+|+++.
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~---~~~~~l~ell~~aDvIvl~l 208 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YV---DYKDTIEEAVEGADIVTLHM 208 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hc---cccCCHHHHHHhCCEEEEeC
Confidence 4579999998 9999999998843 466 8999998642211 00 01 12346788899999999985
No 185
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.72 E-value=0.012 Score=50.74 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhC-CCCCe-EEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMS-PLVSA-LHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~-gl~~e-v~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
|||+|+|++|.||..++..+... ++ + +..+|.+.....-.|+.+....... .+..++|+++.++.+|+||-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~--~lv~~v~~~~~~~~g~d~g~~~~~~~~-~~~v~~~l~~~~~~~DVvIDf 74 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGF--ELVGAVDRKPSAKVGKDVGELAGIGPL-GVPVTDDLEELLEEADVVIDF 74 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTE--EEEEEEETTTSTTTTSBCHHHCTSST--SSBEBS-HHHHTTH-SEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCc--EEEEEEecCCcccccchhhhhhCcCCc-ccccchhHHHhcccCCEEEEc
Confidence 69999998899999999998885 55 5 4456665411111233221100011 122247888899999999987
No 186
>PLN02928 oxidoreductase family protein
Probab=96.72 E-value=0.0085 Score=60.85 Aligned_cols=103 Identities=20% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhh--cccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADL--SHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL--~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||..+|..+...|. +|..+|..........+ ................++++.++.||+|+++.
T Consensus 158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l 234 (347)
T PLN02928 158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC 234 (347)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence 3579999998 9999999999988888 99999986311111111 00100000000001246788999999999985
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
. ..+ ++-.++. .+.++..-|+++||+++
T Consensus 235 P--lt~---------~T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 235 T--LTK---------ETAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred C--CCh---------HhhcccC--HHHHhcCCCCeEEEECC
Confidence 2 211 1112221 12333334799999886
No 187
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.70 E-value=0.0088 Score=57.05 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|++.|+|+ |.+|.++|..|...|. +|+++|.++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDE 33 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCH
Confidence 68999998 9999999999999999 999999997
No 188
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=96.66 E-value=0.0099 Score=59.48 Aligned_cols=107 Identities=21% Similarity=0.164 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc----CCCCceeeecCCCcHHhhcC--CCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC----NTPSQVLDFTGPEELASALK--GVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~----~~~~~v~~i~~t~d~~~al~--~aDiVI 166 (412)
|+||.|+||+|++|+.++..|...|. ..+++.|.....+....+.+. .......+++...++++.++ ++|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 46899999999999999999999885 246677764311111111110 00000112222234445565 489999
Q ss_pred EcCCCCCCC--CCchhhHHHhhHHHHHHHHHHHHhh
Q 015172 167 IPAGVPRKP--GMTRDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 167 iaag~p~k~--g~~r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
.+||..... ..........|+.....+++.+.++
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~ 115 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAY 115 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHh
Confidence 999864321 1123455677888888888888764
No 189
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.66 E-value=0.013 Score=55.94 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc-cCCCCceeeecC-CCcHHhhc-CCCcEEEEc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFTG-PEELASAL-KGVNVVVIP 168 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~~-t~d~~~al-~~aDiVIia 168 (412)
+++||.|+||+|++|..++..|+..|. +|+++..+...... .+.+ ........++.. ..++.+.+ .++|+||.+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~-~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~ 92 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKT-SLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA 92 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHH-hcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence 368999999999999999999999998 88887665421111 0111 011000112211 12344566 689999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
+|.....+. .+....|..-...+++.+.+....-++
T Consensus 93 ~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV 128 (251)
T PLN00141 93 TGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFI 128 (251)
T ss_pred CCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEE
Confidence 876432111 111223333445566666654433344
No 190
>PLN00016 RNA-binding protein; Provisional
Probab=96.66 E-value=0.011 Score=60.25 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=33.2
Q ss_pred CCCceEEEE----cCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 91 QASFKVAVL----GAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 91 ~~~~KV~VI----GAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..++||.|+ ||+|++|..++..|+..|. +|++++.+.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 345789999 9999999999999999998 999999875
No 191
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.64 E-value=0.017 Score=56.62 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=66.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCC--CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLV--SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~--~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
++||++||+ |.||..++..+...|.. .+|...|.++.+.. ++... ++. . + ++|..+....+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~-~g~--~--~-~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE-YGV--V--T-TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH-cCC--c--c-cCcHHHHHhhCCEEEEEe-
Confidence 479999998 99999999999998832 48888888763221 22221 121 1 1 456666889999999994
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
|| ..+.++.++++...++-+||-+.=.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 22 456777888877446777755554554
No 192
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.63 E-value=0.017 Score=56.46 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=72.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCC-C--CceeeecCCCcHHh-------hc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNT-P--SQVLDFTGPEELAS-------AL 159 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~-~--~~v~~i~~t~d~~~-------al 159 (412)
.++.+.|.||++.+|..+|..++.+|. +|+|+.+++ +...+.++.+... . ..-.+++..++.+. ..
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 456899999999999999999999999 999999987 4555556665420 0 00112222222221 12
Q ss_pred CCCcEEEEcCCCCCCCC------CchhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172 160 KGVNVVVIPAGVPRKPG------MTRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS 210 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~g------~~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T 210 (412)
-..|+.|..||...-.. .+-.+++.-|+--...+...+-... -.+-||+++
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~ 142 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIG 142 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 36999999999764221 1234566777655555555544433 134444543
No 193
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.63 E-value=0.01 Score=56.28 Aligned_cols=116 Identities=20% Similarity=0.321 Sum_probs=64.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHHh-------hcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELAS-------ALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~-------al~~ 161 (412)
.++|.|+||+|.+|..++..|+..|. +|++.+.++ ......++.+...... + .+++...+.++ .+..
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 35799999999999999999999998 899999986 2222223332211100 0 11111111111 2345
Q ss_pred CcEEEEcCCCCCC-C--CC---chhhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEc
Q 015172 162 VNVVVIPAGVPRK-P--GM---TRDDLFNINANI----VKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 162 aDiVIiaag~p~k-~--g~---~r~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~T 210 (412)
.|+||.++|.... + .. ...+.+..|..- .+.+.+.+.+..+.+.|+++|
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 8999999987421 1 11 112234445544 555666653333344454444
No 194
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.61 E-value=0.014 Score=58.18 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||- |.||..+|..+...|. +|+.+|..... .. .... ..++++.++.||+|++....
T Consensus 121 ~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp~ 183 (303)
T PRK06436 121 YNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLPL 183 (303)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCCC
Confidence 3579999998 9999999987777788 99999975211 00 1110 13577889999999998421
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN 214 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~ 214 (412)
. + ++-.++. .+.++..-|++++|+++ .++|
T Consensus 184 t--~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd 215 (303)
T PRK06436 184 T--D---------ETRGMIN--SKMLSLFRKGLAIINVARADVVD 215 (303)
T ss_pred C--c---------hhhcCcC--HHHHhcCCCCeEEEECCCccccC
Confidence 1 1 1111111 22233333899999885 5555
No 195
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.57 E-value=0.008 Score=52.28 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||+|+|+ |.+|+.++..|+..|+ .++.|+|-+.
T Consensus 3 ~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~ 36 (135)
T PF00899_consen 3 KRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI 36 (135)
T ss_dssp -EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred CEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence 68999998 9999999999999996 7999999985
No 196
>PLN02686 cinnamoyl-CoA reductase
Probab=96.55 E-value=0.014 Score=59.38 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=66.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhccc--------CCCCceeeecCCCcHHhhcCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHC--------NTPSQVLDFTGPEELASALKG 161 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~--------~~~~~v~~i~~t~d~~~al~~ 161 (412)
..+++|.|+||+|++|++++..|+..|. +|++++.+.. .....++... .......+++-..++.+++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~ 128 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG 128 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence 4567999999999999999999999998 8887655431 1111122110 000001123222345567889
Q ss_pred CcEEEEcCCCCCCCCC--chhhHHHhhHHHHHHHHHHHHhh
Q 015172 162 VNVVVIPAGVPRKPGM--TRDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 162 aDiVIiaag~p~k~g~--~r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
+|.||.+++.....+. ...++...|+.-...+++.+.+.
T Consensus 129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 9999998775322221 12334456788888888887764
No 197
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.54 E-value=0.011 Score=58.48 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=60.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
.++|+|+|+ |.+|..+|..|...|. +|+++|++..... .+..... ..+ ...++.+.++++|+||.+...+
T Consensus 151 gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~--~~~~~g~----~~~-~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 151 GSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLA--RITEMGL----IPF-PLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHCCC----eee-cHHHHHHHhccCCEEEECCChH
Confidence 468999998 9999999999999897 9999999752111 1111111 111 1235666789999999985211
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE-cCCCC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII-SNPVN 214 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~-TNPv~ 214 (412)
++ + .+ .++..-|+++++.+ ++|-.
T Consensus 221 ---------ii--~----~~---~l~~~k~~aliIDlas~Pg~ 245 (287)
T TIGR02853 221 ---------VL--T----AD---VLSKLPKHAVIIDLASKPGG 245 (287)
T ss_pred ---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCC
Confidence 01 1 11 22223368888766 68876
No 198
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.53 E-value=0.014 Score=57.51 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=44.2
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||. |.||..++..++..|. +|.+||++..+ ..++.... . ..+.++.++++++|+||++.
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~---~~~~s~~~~~~~advVil~v 60 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----A---QAAASPAEAAEGADRVITML 60 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----C---eecCCHHHHHhcCCEEEEeC
Confidence 5798 9999999999999998 99999998632 11222211 1 12346777899999999995
No 199
>PRK07574 formate dehydrogenase; Provisional
Probab=96.53 E-value=0.0093 Score=61.42 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=47.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||..+|..+...|. +|+-+|.........+ .. .+. ...++++.+++||+|++..
T Consensus 191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~~--~~----g~~---~~~~l~ell~~aDvV~l~l 256 (385)
T PRK07574 191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVEQ--EL----GLT---YHVSFDSLVSVCDVVTIHC 256 (385)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhHh--hc----Cce---ecCCHHHHhhcCCEEEEcC
Confidence 3579999998 9999999999998888 9999998642111110 00 011 1235778899999999984
No 200
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.52 E-value=0.009 Score=52.57 Aligned_cols=73 Identities=18% Similarity=0.244 Sum_probs=49.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++|+|+|+ |.||..++..+...+ ..+|.++|.+.. ...+.++.... +. .. ..+.++.++++|+||.+..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~----~~-~~-~~~~~~~~~~~Dvvi~~~~ 90 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG----IA-IA-YLDLEELLAEADLIINTTP 90 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc----cc-ee-ecchhhccccCCEEEeCcC
Confidence 478999998 999999999999886 348999999862 22222222110 11 11 1345556899999999975
Q ss_pred CCC
Q 015172 171 VPR 173 (412)
Q Consensus 171 ~p~ 173 (412)
.+.
T Consensus 91 ~~~ 93 (155)
T cd01065 91 VGM 93 (155)
T ss_pred CCC
Confidence 543
No 201
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.51 E-value=0.017 Score=54.08 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus 22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 68999998 9999999999999995 7999999984
No 202
>PRK12367 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.034 Score=53.39 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=58.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
+++.|+||+|.+|..++..++..|. +|++.|.+......... +........+++-..+..+.+...|++|..||...
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~~ 91 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESPNEWIKWECGKEESLDKQLASLDVLILNHGINP 91 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccCC
Confidence 5789999999999999999999998 99999987521111111 11000001122222334456778999999998743
Q ss_pred CCCCch---hhHHHhhHHHHHHHHHH
Q 015172 174 KPGMTR---DDLFNINANIVKTLVEA 196 (412)
Q Consensus 174 k~g~~r---~dl~~~N~~i~~~i~~~ 196 (412)
....+. .+.+..|+.-...+++.
T Consensus 92 ~~~~~~~~~~~~~~vN~~g~~~l~~~ 117 (245)
T PRK12367 92 GGRQDPENINKALEINALSSWRLLEL 117 (245)
T ss_pred cCCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 222232 23345565433334433
No 203
>PRK05865 hypothetical protein; Provisional
Probab=96.50 E-value=0.015 Score=65.49 Aligned_cols=104 Identities=20% Similarity=0.169 Sum_probs=68.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||.|+||+|++|..++..|+..|. +|+++|.+.... + .........++....++.++++++|+||.+|+...
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~ 73 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----W-PSSADFIAADIRDATAVESAMTGADVVAHCAWVRG 73 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCccc
Confidence 6899999999999999999999998 999999864211 0 00111111123223355567899999999987532
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
+ ....|+.....+++.+.+.... .|+.+|.+
T Consensus 74 -~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~ 104 (854)
T PRK05865 74 -R------NDHINIDGTANVLKAMAETGTG-RIVFTSSG 104 (854)
T ss_pred -c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCc
Confidence 1 2456777777788877765433 34445544
No 204
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=96.50 E-value=0.032 Score=57.94 Aligned_cols=105 Identities=19% Similarity=0.261 Sum_probs=62.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC-ce-eeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS-QV-LDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~al~~aDiVIiaa 169 (412)
+.++|.|+||+|.+|..++..++..|. +|+++|.+.... ...+.+..... .+ -+++-..+..+.+.+.|++|..+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l-~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKI-TLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH-HHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 356899999999999999999999998 999999875211 11111111110 01 12221223445578999999998
Q ss_pred CCCCCCCCch---hhHHHhhHH----HHHHHHHHHHh
Q 015172 170 GVPRKPGMTR---DDLFNINAN----IVKTLVEAVAD 199 (412)
Q Consensus 170 g~p~k~g~~r---~dl~~~N~~----i~~~i~~~i~~ 199 (412)
|.......+. .+.+..|.. +.+.+.+.+++
T Consensus 254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~ 290 (406)
T PRK07424 254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKT 290 (406)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8754333332 233455654 44444554543
No 205
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.49 E-value=0.019 Score=55.47 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=45.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
|||+|||+ |.||..++..+...++ ...+.++|.+..+. .++.+. .+. .. ...+..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~--~~l~~~-~~~-~~---~~~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIA--ARLAER-FPK-VR---IAKDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHH--HHHHHH-cCC-ce---EeCCHHHHHHhCCEEEEEe
Confidence 58999998 9999999999988775 23567788765221 122221 110 11 1245666778999999994
No 206
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.49 E-value=0.033 Score=55.83 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhh
Q 015172 105 IGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDD 181 (412)
Q Consensus 105 vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~d 181 (412)
-|.++|..|+..|+ +|++||++.. ......+.+... . ..++..++.++||+||.+..
T Consensus 31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~---~AaS~aEAAa~ADVVIL~LP----------- 90 (341)
T TIGR01724 31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----K---VVSDDKEAAKHGEIHVLFTP----------- 90 (341)
T ss_pred CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----e---ecCCHHHHHhCCCEEEEecC-----------
Confidence 37899999999999 9999998752 122223333321 1 12456678999999999832
Q ss_pred HHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 182 LFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 182 l~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
|-+.+++++..+.... ++.++|..| +++
T Consensus 91 ----d~aaV~eVl~GLaa~L~~GaIVID~S-TIs 119 (341)
T TIGR01724 91 ----FGKGTFSIARTIIEHVPENAVICNTC-TVS 119 (341)
T ss_pred ----CHHHHHHHHHHHHhcCCCCCEEEECC-CCC
Confidence 4455555655666666 455554433 444
No 207
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.47 E-value=0.017 Score=57.72 Aligned_cols=98 Identities=22% Similarity=0.325 Sum_probs=63.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||+ |.||..++..+...|. .+|.++|.+.. ...+.++.. .... ..++.+.+.++|+||.+.
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g~-----~~~~---~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELGG-----NAVP---LDELLELLNEADVVISAT 246 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcCC-----eEEe---HHHHHHHHhcCCEEEECC
Confidence 4689999998 9999999988887663 48999999763 223332211 1111 135666789999999997
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhh-CCCeEEEEEcCCCC
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADN-CPDAFIHIISNPVN 214 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~aiviv~TNPv~ 214 (412)
+.|.. ..+..+.. +.. ....+++-.+||-|
T Consensus 247 ~~~~~------------~~~~~~~~---~~~~~~~~~viDlavPrd 277 (311)
T cd05213 247 GAPHY------------AKIVERAM---KKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred CCCch------------HHHHHHHH---hhCCCCCeEEEEeCCCCC
Confidence 76631 11122221 212 24668888899988
No 208
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.015 Score=54.26 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQ 40 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCH
Confidence 5799999999999999999999888 899999876
No 209
>PRK06182 short chain dehydrogenase; Validated
Probab=96.45 E-value=0.022 Score=54.87 Aligned_cols=113 Identities=20% Similarity=0.178 Sum_probs=62.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc-------CCCcEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL-------KGVNVV 165 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al-------~~aDiV 165 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.+.... .++..........+++-..+.++.+ .+.|+|
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l--~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l 78 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKM--EDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL 78 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 36799999999999999999999998 999999875211 1111111111011222122222223 378999
Q ss_pred EEcCCCCCC-C--CCc---hhhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172 166 VIPAGVPRK-P--GMT---RDDLFNINAN----IVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 166 Iiaag~p~k-~--g~~---r~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T 210 (412)
|..+|.... + ..+ ....+..|.. +.+.+.+.+++.... .+++++
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~is 132 (273)
T PRK06182 79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINIS 132 (273)
T ss_pred EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 999987432 1 111 1223444543 355556666554433 344443
No 210
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.45 E-value=0.0075 Score=58.56 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=70.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC----CCC-----CeEEEEecCch--hhhhhhhcccCCC--CceeeecCCCcHHhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS----PLV-----SALHLYDVMNV--KGVAADLSHCNTP--SQVLDFTGPEELASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~----gl~-----~ev~L~Di~~~--~g~~~dL~~~~~~--~~v~~i~~t~d~~~al 159 (412)
..||.++|| |..|.+++.+|... |+- ..+.|+|.+-+ .+. .||.+...+ ..........++.|++
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~~~~L~eav 102 (255)
T PF03949_consen 25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKDWGSLLEAV 102 (255)
T ss_dssp G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT--SSHHHHH
T ss_pred HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCcccccccCHHHHH
Confidence 369999998 99999999888765 874 68999999751 111 233221100 0011111114788999
Q ss_pred CCC--cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 160 KGV--NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 160 ~~a--DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
+++ |++|=+.|.|. -+-+++++.+.+++++.||+-.|||..
T Consensus 103 ~~~kPtvLIG~S~~~g--------------~ft~evv~~Ma~~~erPIIF~LSNPt~ 145 (255)
T PF03949_consen 103 KGAKPTVLIGLSGQGG--------------AFTEEVVRAMAKHNERPIIFPLSNPTP 145 (255)
T ss_dssp HCH--SEEEECSSSTT--------------SS-HHHHHHCHHHSSSEEEEE-SSSCG
T ss_pred HhcCCCEEEEecCCCC--------------cCCHHHHHHHhccCCCCEEEECCCCCC
Confidence 999 99998876542 234778889999999999999999976
No 211
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.43 E-value=0.028 Score=53.60 Aligned_cols=77 Identities=18% Similarity=0.237 Sum_probs=48.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecCCCcHH-------hhcCCCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTGPEELA-------SALKGVN 163 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~t~d~~-------~al~~aD 163 (412)
|+|.|+||+|.+|..++..++..|. .|++.|.++ ......++.+.. ......+++-..+.+ +.+...|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999998 899999876 222223332211 000000111111121 1235789
Q ss_pred EEEEcCCCC
Q 015172 164 VVVIPAGVP 172 (412)
Q Consensus 164 iVIiaag~p 172 (412)
+||..+|..
T Consensus 79 ~li~naG~~ 87 (259)
T PRK08340 79 ALVWNAGNV 87 (259)
T ss_pred EEEECCCCC
Confidence 999999864
No 212
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.43 E-value=0.058 Score=52.37 Aligned_cols=68 Identities=21% Similarity=0.210 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
++||+|+|+.|.||..++..+...+-+.-+.++|.+...... . .. . .+...+|+++.++++|+||...
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~--~~--~---~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q--GA--L---GVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c--CC--C---CccccCCHHHhccCCCEEEECC
Confidence 479999997799999999877765323334458876521111 1 11 1 1223468887788999999763
No 213
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.022 Score=52.97 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|+++|.+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 36899999999999999999999998 899999976
No 214
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=96.41 E-value=0.0059 Score=56.78 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=65.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCC--cEEEEcCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGV--NVVVIPAGVP 172 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~a--DiVIiaag~p 172 (412)
|.|+||+|++|..++..|..+|. +|+-+..... .......... .....++....++.+.+++. |.||.+++.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~--~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLNV--EFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTTE--EEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccceE--EEEEeeccccccccccccccCceEEEEeeccc
Confidence 68999999999999999999998 7664544431 1111111000 00001122223445566666 9999998875
Q ss_pred CC--CCCchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172 173 RK--PGMTRDDLFNINANIVKTLVEAVADNCP 202 (412)
Q Consensus 173 ~k--~g~~r~dl~~~N~~i~~~i~~~i~~~~p 202 (412)
.. ...+..+.+..|+...+.+.+.+.+...
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~ 108 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGV 108 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 31 1124456678899999999999998876
No 215
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.41 E-value=0.015 Score=54.85 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+|++|.+|..++..++..|. +|+++|.+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~ 38 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGA--KVVIADLND 38 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 5899999999999999999999998 999999986
No 216
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.40 E-value=0.0047 Score=56.54 Aligned_cols=66 Identities=20% Similarity=0.218 Sum_probs=46.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
-..++|+|||. |.+|..+|..+...|. +|+.+|....... ...+.. . . ..++++.++.||+|++..
T Consensus 34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~-~---~~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----V-E---YVSLDELLAQADIVSLHL 99 (178)
T ss_dssp STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----E-E---ESSHHHHHHH-SEEEE-S
T ss_pred cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----c-e---eeehhhhcchhhhhhhhh
Confidence 34679999998 9999999999998898 9999999763222 011110 1 1 135778899999999985
No 217
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.39 E-value=0.03 Score=53.06 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|+|.|+||+|.+|..++..++..|. +|+++|.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 6899999999999999999999998 999999875
No 218
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.39 E-value=0.023 Score=49.72 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=30.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||.|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899998 9999999999999996 6899999874
No 219
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.39 E-value=0.052 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|+++|.+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36899999999999999999999998 899999986
No 220
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.37 E-value=0.017 Score=55.07 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ .+++|+|-+.
T Consensus 22 ~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 58999998 9999999999999995 7999999875
No 221
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.37 E-value=0.0057 Score=62.51 Aligned_cols=75 Identities=29% Similarity=0.391 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|.|+|+ |.||..++..|+..+...+|++.|.+.. ...+.++.........-+.....++++.++++|+||.++|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999 9999999999999876558999999873 33333321111111011121123356678999999999763
No 222
>PRK07102 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.031 Score=52.61 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|++|.|+||+|++|..++..++..|. +|++.|.+.
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~ 35 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDV 35 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCH
Confidence 46899999999999999999999998 899999986
No 223
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.35 E-value=0.024 Score=55.56 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=60.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCc-HHhhc-----CCCcEEEEcC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE-LASAL-----KGVNVVVIPA 169 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d-~~~al-----~~aDiVIiaa 169 (412)
|.|+||+|++|++++..|+..|. ..+.++|..........+.+.. +.+.....+ .++.+ .++|+||.+|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~----~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLD----IADYMDKEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhh----hhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence 68999999999999999999986 3466778753111000111110 111100011 11122 3799999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
+.+..........+..|+....++.+.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~ 108 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLERE 108 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 86543333344556778888888888887754
No 224
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=96.34 E-value=0.023 Score=55.41 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=65.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hh-hhhhhcccC-CCCceeeecCCCcHHhhcC--CCcEEEEcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KG-VAADLSHCN-TPSQVLDFTGPEELASALK--GVNVVVIPA 169 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g-~~~dL~~~~-~~~~v~~i~~t~d~~~al~--~aDiVIiaa 169 (412)
||.|+||+|++|..++..|...|. +|+++|.... .. ....+.+.. ......++....++++.++ +.|+||.++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~a 78 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFA 78 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECc
Confidence 688999999999999999999998 8999886431 11 111111100 0000011111123333443 699999999
Q ss_pred CCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 170 GVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 170 g~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
|....+. ....+.+..|+.....+++.+.+.....++
T Consensus 79 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v 117 (328)
T TIGR01179 79 GLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI 117 (328)
T ss_pred cccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence 8643221 223345667888888888888766534443
No 225
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.34 E-value=0.017 Score=57.29 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=47.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||.|||+ |.+|..++..+...|. +|..+|++.. ...+.++ . .... ...++.+.++++|+||.+.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~---~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPF---HLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceee---cHHHHHHHhCCCCEEEECC
Confidence 579999998 9999999999998897 9999999852 2222221 1 1111 1235566789999999985
No 226
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=96.32 E-value=0.028 Score=61.67 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=67.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecCCCcHHhhc--CCCcEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTGPEELASAL--KGVNVVV 166 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~t~d~~~al--~~aDiVI 166 (412)
.|||.|+||+|++|++++..|...+.-.+|+.+|..........+........+. ++.........+ .++|+||
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~Vi 85 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTIM 85 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEEE
Confidence 5799999999999999999998874223899998742100111111000000111 221111122222 6899999
Q ss_pred EcCCCCCCCC--CchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 167 IPAGVPRKPG--MTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 167 iaag~p~k~g--~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
.+|+...... ....++...|+.....+++.+++...-..+|.+|
T Consensus 86 HlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~S 131 (668)
T PLN02260 86 HFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVS 131 (668)
T ss_pred ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998653211 1234456778888888888887765222343443
No 227
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.037 Score=60.19 Aligned_cols=109 Identities=18% Similarity=0.172 Sum_probs=66.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHh--CCCCCeEEEEecCchhhhhhhhcccCCCCcee----eecC------CCcHHhhcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKM--SPLVSALHLYDVMNVKGVAADLSHCNTPSQVL----DFTG------PEELASALKG 161 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~--~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~----~i~~------t~d~~~al~~ 161 (412)
|||.|+||+|++|++++..|+. .+. +|++++.+.......++........+. +++. ..+++ .+++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~-~l~~ 77 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIA-ELGD 77 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHH-HhcC
Confidence 6899999999999999999984 566 999999865211111111100000011 1110 11233 3489
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
+|+||.+|+... ...+..+....|+.-.+.+++.+.+..-..++
T Consensus 78 ~D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v 121 (657)
T PRK07201 78 IDHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATFH 121 (657)
T ss_pred CCEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEE
Confidence 999999987542 22334455677888888888888775433333
No 228
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.30 E-value=0.021 Score=57.26 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=43.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||+|||. |.||..++..|...|+ ++++.+....... ..+.... +. .+ +..+++++||+||++.
T Consensus 3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~---~~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FK---VG-TVEEAIPQADLIMNLL 67 (314)
T ss_pred cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CE---EC-CHHHHHhcCCEEEEeC
Confidence 478999998 9999999999999997 7776655431111 1111111 11 12 3556789999999994
No 229
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.044 Score=51.93 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..|+.+|. +|++++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999998 899999875
No 230
>PLN02253 xanthoxin dehydrogenase
Probab=96.28 E-value=0.033 Score=53.72 Aligned_cols=35 Identities=23% Similarity=0.339 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~ 52 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQD 52 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 35799999999999999999999998 999999875
No 231
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.27 E-value=0.012 Score=54.33 Aligned_cols=77 Identities=23% Similarity=0.204 Sum_probs=49.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceee--ecCCCcHHhhcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLD--FTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~--i~~t~d~~~al~~aDiVIia 168 (412)
.++|.|+|++|.+|..++..++..+. +|++++.+.. .....++.+.. ...+.. .....+..++++++|+||.+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 47899999889999999999998886 9999998752 22222232111 111211 11112334678999998887
Q ss_pred CCCC
Q 015172 169 AGVP 172 (412)
Q Consensus 169 ag~p 172 (412)
...+
T Consensus 105 t~~g 108 (194)
T cd01078 105 GAAG 108 (194)
T ss_pred CCCC
Confidence 5433
No 232
>PRK08643 acetoin reductase; Validated
Probab=96.26 E-value=0.048 Score=51.68 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~ 36 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNE 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4688999999999999999999998 999999875
No 233
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.26 E-value=0.0099 Score=56.74 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=61.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCC--eEEEEecCc----hhh-----hhhhhcccCCCCceeeecCCCcHHhhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVS--ALHLYDVMN----VKG-----VAADLSHCNTPSQVLDFTGPEELASALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~--ev~L~Di~~----~~g-----~~~dL~~~~~~~~v~~i~~t~d~~~al~~ 161 (412)
.+||.|+|| |.+|.+++..|...|+ + +|.++|.+. .+. +..++.+.. .. ... ..++.+++++
T Consensus 25 ~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~-~~--~~~--~~~l~~~l~~ 97 (226)
T cd05311 25 EVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKET-NP--EKT--GGTLKEALKG 97 (226)
T ss_pred CCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHh-cc--Ccc--cCCHHHHHhc
Confidence 368999998 9999999999999886 5 799999983 111 112222111 00 011 1256568999
Q ss_pred CcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 162 VNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 162 aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
+|+||-+.+ +|+ + + .++.+.+ .++.+++..+||..
T Consensus 98 ~dvlIgaT~----~G~-----~--~----~~~l~~m---~~~~ivf~lsnP~~ 132 (226)
T cd05311 98 ADVFIGVSR----PGV-----V--K----KEMIKKM---AKDPIVFALANPVP 132 (226)
T ss_pred CCEEEeCCC----CCC-----C--C----HHHHHhh---CCCCEEEEeCCCCC
Confidence 999999864 343 1 1 1222322 36777777889975
No 234
>PLN03139 formate dehydrogenase; Provisional
Probab=96.26 E-value=0.015 Score=59.85 Aligned_cols=94 Identities=21% Similarity=0.192 Sum_probs=59.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||. |.||..+|..+...|. +|+.+|......... .+.. +. ...++++.+++||+|++....
T Consensus 198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~g----~~---~~~~l~ell~~sDvV~l~lPl 265 (386)
T PLN03139 198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KETG----AK---FEEDLDAMLPKCDVVVINTPL 265 (386)
T ss_pred CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhcC----ce---ecCCHHHHHhhCCEEEEeCCC
Confidence 4579999998 9999999999988888 999999864211110 0100 11 124678889999999998421
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
. .++-.++. .+.+...-|++++|+.+
T Consensus 266 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 266 T-----------EKTRGMFN--KERIAKMKKGVLIVNNA 291 (386)
T ss_pred C-----------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence 1 11222221 12333334889998875
No 235
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.25 E-value=0.026 Score=55.04 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=54.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
+|||+|||. |.||..++..+...+. +.-+.++|.+.... .++... .. ... .+|+++.+.++|+||++++
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a--~~~a~~-~~--~~~---~~~~~ell~~~DvVvi~a~- 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKA--ENLASK-TG--AKA---CLSIDELVEDVDLVVECAS- 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHH--HHHHHh-cC--Cee---ECCHHHHhcCCCEEEEcCC-
Confidence 479999998 9999999988876541 22356788875221 122111 11 111 2567766699999999953
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
-....+++..+.+...+.++
T Consensus 71 ---------------~~~~~~~~~~al~~Gk~Vvv 90 (265)
T PRK13304 71 ---------------VNAVEEVVPKSLENGKDVII 90 (265)
T ss_pred ---------------hHHHHHHHHHHHHcCCCEEE
Confidence 13335566666555566444
No 236
>PRK05717 oxidoreductase; Validated
Probab=96.25 E-value=0.018 Score=54.77 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHH-------hhcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELA-------SALKGV 162 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~a 162 (412)
..++|.|+||+|++|..++..|+..|. +|++.|.+... ....++.. .......+++...+.. +.+...
T Consensus 9 ~~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 85 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALGE-NAWFIAMDVADEAQVAAGVAEVLGQFGRL 85 (255)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcCC-ceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 346799999999999999999999997 99999987521 11111111 0000001111111111 123457
Q ss_pred cEEEEcCCCCCCCC-----Cch---hhHHHhhHHHHHHHHHHHHhhC--CCeEEEEEc
Q 015172 163 NVVVIPAGVPRKPG-----MTR---DDLFNINANIVKTLVEAVADNC--PDAFIHIIS 210 (412)
Q Consensus 163 DiVIiaag~p~k~g-----~~r---~dl~~~N~~i~~~i~~~i~~~~--p~aiviv~T 210 (412)
|+||..+|...... .+. ...+..|+.-...+.+.+.++. ..+.+|++|
T Consensus 86 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~s 143 (255)
T PRK05717 86 DALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLA 143 (255)
T ss_pred CEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 99999998753211 122 2345566655555555554432 234555554
No 237
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.033 Score=53.11 Aligned_cols=35 Identities=34% Similarity=0.361 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++|.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36899999999999999999999998 999999875
No 238
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=96.24 E-value=0.023 Score=57.85 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=68.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch----hhhhhhhcccC-CCCceeeecCCCcHHhhcCCCcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV----KGVAADLSHCN-TPSQVLDFTGPEELASALKGVNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~----~g~~~dL~~~~-~~~~v~~i~~t~d~~~al~~aDiVIi 167 (412)
+.++.|+||+|++|.++...|..++..-+++++|.... ..+-.++ +.. ......++....+...++.++ .||+
T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh 81 (361)
T KOG1430|consen 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVVH 81 (361)
T ss_pred CCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence 46899999999999999999999985559999999763 1111111 111 111112233334566789999 5666
Q ss_pred cCCCC-CCCCC-chhhHHHhhHHHHHHHHHHHHhhC
Q 015172 168 PAGVP-RKPGM-TRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 168 aag~p-~k~g~-~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
.+..+ ..-.+ .|.-...-|+.--+.+.+.+.+..
T Consensus 82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~ 117 (361)
T KOG1430|consen 82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELG 117 (361)
T ss_pred eccccCccccccchhhheeecchhHHHHHHHHHHhC
Confidence 44332 22233 355556678888888888888765
No 239
>PRK12320 hypothetical protein; Provisional
Probab=96.22 E-value=0.027 Score=62.16 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=64.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||.|+||+|++|+.++..|...|. +|+.+|..... ..+........++.. ..+.++++++|+||.+++...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRVDYVCASLRN-PVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCceEEEccCCC-HHHHHHhcCCCEEEEcCccCc
Confidence 6899999999999999999999998 99999975421 111111100112211 124456789999999987531
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
.. ....|+....++++.+++... .+|.+|
T Consensus 73 --~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 73 --SA----PGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred --cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 11 123577777888888776553 344454
No 240
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.21 E-value=0.028 Score=53.48 Aligned_cols=96 Identities=20% Similarity=0.290 Sum_probs=66.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
+||++||. |.+|..+.-.+-... -+.-+.+||.+..+.. .+....... ..+++.+.+.+.|+||++|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~------~~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRR------CVSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCC------ccccHHHHhhccceeeeeCC--
Confidence 68999998 999999997766553 2467888998763221 122111111 12456666799999999975
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 173 RKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 173 ~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
.+-+++++.++-+...|.+++-++-=+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 5678899999988888988855544444
No 241
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.20 E-value=0.03 Score=53.15 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=65.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc-e-eeecCCCcHH-------hhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ-V-LDFTGPEELA-------SALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~-v-~~i~~t~d~~-------~al~~ 161 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.++ ......++.+...... + .+++-..+++ +.+..
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999998 999999886 2222222222110000 0 0111111122 22346
Q ss_pred CcEEEEcCCCCCC-CC--Cch---hhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEcC
Q 015172 162 VNVVVIPAGVPRK-PG--MTR---DDLFNINANIVKTLVEAVADNC---PDAFIHIISN 211 (412)
Q Consensus 162 aDiVIiaag~p~k-~g--~~r---~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~TN 211 (412)
.|+||..+|.... +- .+. .+.+..|+.-...+.+.+.++. ..+.++++|.
T Consensus 88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss 146 (255)
T PRK07523 88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIAS 146 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEcc
Confidence 8999999987531 11 111 2334566654444555554442 2345555553
No 242
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.18 E-value=0.025 Score=57.31 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|||+ |.+|+.+|..|+..|+ +.|.|+|.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY 58 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 368999998 9999999999999995 7999999984
No 243
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=96.18 E-value=0.025 Score=54.49 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus 25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 58999998 9999999999999995 7999999985
No 244
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.052 Score=52.43 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++|.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~ 38 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSE 38 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCH
Confidence 35799999999999999999999998 899999875
No 245
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.15 E-value=0.037 Score=51.94 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||+.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999998 999999875
No 246
>PRK06196 oxidoreductase; Provisional
Probab=96.14 E-value=0.051 Score=53.74 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=63.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVN 163 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aD 163 (412)
.++|.|+||+|.+|..++..|+..|. +|++.+++.. .....++.... ....+++-..+.+ +.+.+.|
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~--~~~~Dl~d~~~v~~~~~~~~~~~~~iD 101 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE--VVMLDLADLESVRAFAERFLDSGRRID 101 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe--EEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence 35799999999999999999999998 9999998752 21122221110 0001111111111 1235789
Q ss_pred EEEEcCCCCCCCCC-c---hhhHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172 164 VVVIPAGVPRKPGM-T---RDDLFNINA----NIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 164 iVIiaag~p~k~g~-~---r~dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T 210 (412)
+||..||....+.. + -...+..|. .+.+.+.+.+.+.. .+.||++|
T Consensus 102 ~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 102 ILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred EEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 99999986432211 1 122234443 34555666665443 34554544
No 247
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.12 E-value=0.1 Score=49.03 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~ 39 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence 46899999999999999999999998 999999865
No 248
>PRK07069 short chain dehydrogenase; Validated
Probab=96.12 E-value=0.042 Score=51.68 Aligned_cols=113 Identities=25% Similarity=0.322 Sum_probs=64.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC-c--hhhhhhhhcccCCCC----ceeeecCCCcHH-------hhcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-N--VKGVAADLSHCNTPS----QVLDFTGPEELA-------SALK 160 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~-~--~~g~~~dL~~~~~~~----~v~~i~~t~d~~-------~al~ 160 (412)
||.|+||+|.+|..++..++..|. +|++.|.+ . ......++....... ...+++...+++ +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 588999999999999999999998 99999987 3 222222222111000 001222111221 2245
Q ss_pred CCcEEEEcCCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172 161 GVNVVVIPAGVPRKP---GMTR---DDLFNINAN----IVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 161 ~aDiVIiaag~p~k~---g~~r---~dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T 210 (412)
..|+||..+|..... ..+. ...+..|+. ..+.+.+.+.+.... .|++++
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~s 137 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNIS 137 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEec
Confidence 789999999865321 1122 223455655 666777777654434 444444
No 249
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.12 E-value=0.033 Score=53.77 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 369999998 9999999999999995 7999999975
No 250
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.12 E-value=0.024 Score=55.81 Aligned_cols=105 Identities=26% Similarity=0.337 Sum_probs=71.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC----CCC-----CeEEEEecCch--hhhhhhhcccC--CCCceeeecCCCcHHhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS----PLV-----SALHLYDVMNV--KGVAADLSHCN--TPSQVLDFTGPEELASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~----gl~-----~ev~L~Di~~~--~g~~~dL~~~~--~~~~v~~i~~t~d~~~al 159 (412)
..||.|.|| |..|.+++.+|... |+- ..+.++|.+-+ ... .||.+.. +...... ....++.|++
T Consensus 25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~i 101 (279)
T cd05312 25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEVV 101 (279)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHHH
Confidence 468999998 99999999888764 762 58999998741 111 1122111 0000110 1235788999
Q ss_pred C--CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 160 K--GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 160 ~--~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
+ ++|++|=+.+.+ | -+-+++++.+.++|++.||+-.|||..
T Consensus 102 ~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 102 KAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred HhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 9 999998875544 1 233678888888999999999999975
No 251
>PRK06101 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.051 Score=51.31 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=63.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcC----CCcEEEEc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALK----GVNVVVIP 168 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~----~aDiVIia 168 (412)
.+|.|+||+|.+|..++..|+.+|. +|++.|.+.... ...+.. ........+++-..+.++.++ ..|++|..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ 78 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDELHTQS-ANIFTLAFDVTDHPGTKAALSQLPFIPELWIFN 78 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHhc-CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEc
Confidence 5789999999999999999999998 899999876211 111110 011100112221222222232 34788888
Q ss_pred CCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 169 AGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 169 ag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
+|...... .+. .+.+..|+.-...+.+.+..+. ....+++++
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~is 127 (240)
T PRK06101 79 AGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVG 127 (240)
T ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEe
Confidence 77532111 222 2345667766666776666543 344454444
No 252
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.046 Score=52.57 Aligned_cols=102 Identities=16% Similarity=0.011 Sum_probs=57.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHH-------hhcCCCcEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELA-------SALKGVNVV 165 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~-------~al~~aDiV 165 (412)
++|.|+||+|++|..++..|+..|. .|++.+.+.. .....+...........+++-..+.. +.+.+.|+|
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVV 80 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5799999999999999999999998 8999988751 11111111111000000111111111 123568999
Q ss_pred EEcCCCCCCCC-C--ch---hhHHHhhHHHHHHHHHHH
Q 015172 166 VIPAGVPRKPG-M--TR---DDLFNINANIVKTLVEAV 197 (412)
Q Consensus 166 Iiaag~p~k~g-~--~r---~dl~~~N~~i~~~i~~~i 197 (412)
|..+|...... . +. ...+..|..-...+.+.+
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~ 118 (276)
T PRK06482 81 VSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAA 118 (276)
T ss_pred EECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 99998754221 1 11 223445666555566665
No 253
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.06 E-value=0.029 Score=56.80 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|+|+ |.+|+.+|..|+..|+ ++|.|+|-+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 368999998 9999999999999996 7999999974
No 254
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.027 Score=53.04 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|++|..++..++..|. +|+++|.++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~ 40 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA 40 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36799999999999999999999997 999999875
No 255
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.05 E-value=0.039 Score=51.74 Aligned_cols=116 Identities=18% Similarity=0.177 Sum_probs=62.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCc-e-eeecCCCcHHhh-------cC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQ-V-LDFTGPEELASA-------LK 160 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~-v-~~i~~t~d~~~a-------l~ 160 (412)
.++|.|+||+|.+|..++..++.+|. ++++.+.+. ......++........ + .+++-..++++. +.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999998 888877643 1222222221111000 0 011111122222 34
Q ss_pred CCcEEEEcCCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 161 GVNVVVIPAGVPRKPG---MTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 161 ~aDiVIiaag~p~k~g---~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
+.|+||..+|...... .+. ...+..|+.-...+++.+.+.. +++.++++|
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 139 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLS 139 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEe
Confidence 7899999998643111 111 2234455554444554544433 445555554
No 256
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.04 E-value=0.073 Score=50.56 Aligned_cols=35 Identities=34% Similarity=0.328 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|++|..++..|+..|. +|+++|.++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 35799999999999999999999998 999999875
No 257
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=96.04 E-value=0.035 Score=56.34 Aligned_cols=82 Identities=11% Similarity=0.031 Sum_probs=50.1
Q ss_pred cHHHHHHHHHhCCCCCeEEEEecCchh--h-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhh
Q 015172 105 IGQPLALLIKMSPLVSALHLYDVMNVK--G-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDD 181 (412)
Q Consensus 105 vG~~iA~~l~~~gl~~ev~L~Di~~~~--g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~d 181 (412)
=|..+|..|+..|. +|+++|.++.. . ....+.... +. .++|..+++++||+||++...
T Consensus 31 gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~G----i~---~asd~~eaa~~ADvVIlaVP~---------- 91 (342)
T PRK12557 31 GGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDAG----VK---VVSDDAEAAKHGEIHILFTPF---------- 91 (342)
T ss_pred CHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHCC----CE---EeCCHHHHHhCCCEEEEECCC----------
Confidence 37888999999998 99999997631 1 111122111 21 234566688999999999421
Q ss_pred HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 182 LFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 182 l~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
-..+++++..+.... ++.+|+..+
T Consensus 92 -----~~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 92 -----GKKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred -----cHHHHHHHHHHHhhCCCCCEEEEec
Confidence 123455556666666 566665443
No 258
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.03 E-value=0.11 Score=49.38 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=64.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHH-------hhcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELA-------SALK 160 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~-------~al~ 160 (412)
++|.|+||+|.+|..++..|+..|. +|+++|.+. ......++.+......+. +++...+.. +.+.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4689999999999999999999998 999999875 222222222211000011 111111111 1234
Q ss_pred CCcEEEEcCCCCCCC---CCchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEcC
Q 015172 161 GVNVVVIPAGVPRKP---GMTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIISN 211 (412)
Q Consensus 161 ~aDiVIiaag~p~k~---g~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~TN 211 (412)
..|+||.++|.+... ..+..+ .+..|+. +.+.+.+.+.+..+++.++.++.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss 141 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINS 141 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 679999999875422 122222 2334443 34555555554443455655554
No 259
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.03 E-value=0.071 Score=50.10 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|++|..++..|+..|. +|+++|.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~ 37 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 46899999999999999999999998 999999876
No 260
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.046 Score=52.36 Aligned_cols=34 Identities=21% Similarity=0.171 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999998 999999975
No 261
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.01 E-value=0.034 Score=60.56 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=80.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~ 171 (412)
..+|.|+|. |.+|+.++..|...++ +++++|.|+.. +..+.+...+....+.+-.+-+ +..+++||.||.+.+.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d 474 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNE 474 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCC
Confidence 468999998 9999999999999998 99999998732 1122222221111111100001 1246899999998321
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEE-EEcCCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHHHHH
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH-IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFV 250 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aivi-v~TNPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~~~l 250 (412)
+ ..| ..++..+++++|+..++ -+.|+.+ .+.+++.+ .+.|+-=+..-+.++-...
T Consensus 475 ~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~~~~ 530 (601)
T PRK03659 475 P-----------EDT----MKIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELGRKT 530 (601)
T ss_pred H-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHHHHH
Confidence 1 333 34556677788986554 4456555 44455553 3344322322223343344
Q ss_pred HHHcCCCCCCee
Q 015172 251 AQKKNLKLIDVD 262 (412)
Q Consensus 251 a~~l~v~~~~V~ 262 (412)
=..+|+++++++
T Consensus 531 L~~lg~~~~~~~ 542 (601)
T PRK03659 531 LVSLGMHPHQAQ 542 (601)
T ss_pred HHHcCCCHHHHH
Confidence 456677765554
No 262
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.00 E-value=0.017 Score=57.42 Aligned_cols=56 Identities=18% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+|.||.++|..|...|. +|.+++... .++++..+.||+||.+.|.
T Consensus 158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 457999999966999999999999998 899986531 2466778999999999886
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 213 ~ 213 (301)
T PRK14194 213 P 213 (301)
T ss_pred h
Confidence 6
No 263
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.032 Score=52.79 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++.+|. +|++.|.++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~ 39 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA 39 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 36899999999999999999999998 999999876
No 264
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=96.00 E-value=0.037 Score=53.96 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=61.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh----hcCCCcEEEEcCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS----ALKGVNVVVIPAGV 171 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~----al~~aDiVIiaag~ 171 (412)
|.|+||+|++|+.++..|...|. .+|+++|..........+..... ..++......+. .+.++|+||.+|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVI---ADYIDKEDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheee---eccCcchhHHHHHHhhccCCCCEEEECccc
Confidence 56999999999999999999984 36888886541111011110000 001111111221 12589999999986
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
+.....+..+....|+.....+++.+.+..
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 106 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKG 106 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 532223344556778888888888887764
No 265
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.00 E-value=0.043 Score=54.24 Aligned_cols=112 Identities=18% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecC-------CCcHHhhcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTG-------PEELASALKG 161 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~-------t~d~~~al~~ 161 (412)
....|.|.||++.+|..+|+.++.+|- .++|+|+|. .+..+..+.+.+ .....-+++- ....++...+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~ 114 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD 114 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 346788999988999999999999997 999999997 233333333211 0000001110 1223456789
Q ss_pred CcEEEEcCCC-CCCCCCc-hhhHHH----hh----HHHHHHHHHHHHhhCCCeEE
Q 015172 162 VNVVVIPAGV-PRKPGMT-RDDLFN----IN----ANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 162 aDiVIiaag~-p~k~g~~-r~dl~~----~N----~~i~~~i~~~i~~~~p~aiv 206 (412)
.|++|..||+ +-++..+ .++.+. -| ..+.+++.+.+.+.+ ++.|
T Consensus 115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHI 168 (300)
T KOG1201|consen 115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHI 168 (300)
T ss_pred ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceE
Confidence 9999999997 4444432 122222 22 467788888888765 4444
No 266
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.039 Score=52.31 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~ 40 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA 40 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 36789999999999999999999998 999999875
No 267
>PRK06128 oxidoreductase; Provisional
Probab=95.99 E-value=0.057 Score=52.98 Aligned_cols=116 Identities=22% Similarity=0.216 Sum_probs=66.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc----hhhhhhhhcccCCCCc-e-eeecCCCcH-------Hhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHCNTPSQ-V-LDFTGPEEL-------ASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~----~~g~~~dL~~~~~~~~-v-~~i~~t~d~-------~~al 159 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.+. .......+........ + .+++-..+. .+.+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999998 888877643 1111122221111100 0 011111111 1234
Q ss_pred CCCcEEEEcCCCCC--CC--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 160 KGVNVVVIPAGVPR--KP--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 160 ~~aDiVIiaag~p~--k~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
...|+||..+|... .+ ..+. ...+..|+.-...+++.+.++. +.+.||+++
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 57899999998642 21 1222 2345667665566666666554 455665554
No 268
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=95.99 E-value=0.027 Score=60.32 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||- |.||..+|..+...|. +|+.||.........++ . .. ...++++.+++||+|++..
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~---~~~~l~ell~~aDvV~l~l 201 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VE---LVDDLDELLARADFITVHT 201 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CE---EcCCHHHHHhhCCEEEEcc
Confidence 3478999998 9999999999988888 99999975321111111 1 11 1235778899999999985
No 269
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.98 E-value=0.0063 Score=59.03 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=79.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCC---------CeEEEEecCch--hhhhhhhcccCCC--CceeeecCCCcHHhhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLV---------SALHLYDVMNV--KGVAADLSHCNTP--SQVLDFTGPEELASAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~---------~ev~L~Di~~~--~g~~~dL~~~~~~--~~v~~i~~t~d~~~al 159 (412)
..||.|.|| |..|.++|.+|...+.- ..++++|..-+ .+. .++.+...+ ...+.-....++.+++
T Consensus 25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~~~~~~L~eav 102 (254)
T cd00762 25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPERESGDLEDAV 102 (254)
T ss_pred hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcccccCCHHHHH
Confidence 468999998 99999999888764431 28999998741 111 112110000 0001011235788999
Q ss_pred C--CCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC--CcHHHHHHHHHHhCCCCCCCe
Q 015172 160 K--GVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN--STVPIAAEVLKQKGVYDPKKL 235 (412)
Q Consensus 160 ~--~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~--~~~pI~t~i~~~~sg~~~~kv 235 (412)
+ ++|++|=+.+.|. -+-+++++.+.++|++.||+-.|||.. -. ..+-+++++ +...+
T Consensus 103 ~~~kptvlIG~S~~~g--------------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~---tpe~a~~~t--~G~ai 163 (254)
T cd00762 103 EAAKPDFLIGVSRVGG--------------AFTPEVIRAXAEINERPVIFALSNPTSKAEC---TAEEAYTAT--EGRAI 163 (254)
T ss_pred HhhCCCEEEEeCCCCC--------------CCCHHHHHHHhhcCCCCEEEECCCcCCcccc---CHHHHHhhc--CCCEE
Confidence 9 9999998766552 233678888888999999999999985 22 234455553 23457
Q ss_pred Eecc
Q 015172 236 FGVT 239 (412)
Q Consensus 236 iGlt 239 (412)
|+..
T Consensus 164 ~AtG 167 (254)
T cd00762 164 FASG 167 (254)
T ss_pred EEEC
Confidence 7764
No 270
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.051 Score=50.98 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++++.++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~ 41 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLA 41 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 46899999999999999999999998 899998875
No 271
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.97 E-value=0.073 Score=58.79 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=45.7
Q ss_pred CCcCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 58 TSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 58 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.|..-++.....=-|.+.++.|-+..| ...+-..++|.|+||+|.+|..++..|+..|. +|++.|++.
T Consensus 380 ~~~~~~~~~~~f~~eyw~~e~~kl~~~~-~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~ 448 (676)
T TIGR02632 380 SEYVSLPEQEAFDIEYWPLEEAKLRRMP-KEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNL 448 (676)
T ss_pred cceecCchhhccchhhhhhhHHhhccCC-CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 4455555444442234444554443322 11223356899999999999999999999998 999999986
No 272
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=95.97 E-value=0.044 Score=52.05 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=63.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHh-------hcCCCcE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELAS-------ALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~-------al~~aDi 164 (412)
++|.|+||+|.+|..++..|+..|. +|++.|.+.. .....++... ......+++...+.++ .+...|+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-AIAVSLDVTRQDSIDRIVAAAVERFGGIDI 83 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-eEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5799999999999999999999998 9999998862 2222222111 0000001211122222 2347899
Q ss_pred EEEcCCCCCC-CC--Cc---hhhHHHhhHHHHHHHHHHHHhh----CCCeEEEEEc
Q 015172 165 VVIPAGVPRK-PG--MT---RDDLFNINANIVKTLVEAVADN----CPDAFIHIIS 210 (412)
Q Consensus 165 VIiaag~p~k-~g--~~---r~dl~~~N~~i~~~i~~~i~~~----~p~aiviv~T 210 (412)
+|.++|.... +- .+ -.+.+..|+.-...+.+.+.++ .+++.|++++
T Consensus 84 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 139 (257)
T PRK07067 84 LFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMA 139 (257)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 9999886421 11 11 1223555655444455444332 2345555554
No 273
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.97 E-value=0.024 Score=57.09 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.++|+|||. |.+|+.+|..+..-|. +|..||....+.... ........++++-|+.||+|++..
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~----------~~~~~~~~~Ld~lL~~sDiv~lh~ 205 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG----------VDGVVGVDSLDELLAEADILTLHL 205 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc----------cccceecccHHHHHhhCCEEEEcC
Confidence 579999998 9999999999999999 999999843211110 001112346778899999999974
No 274
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=95.96 E-value=0.019 Score=56.49 Aligned_cols=79 Identities=19% Similarity=0.218 Sum_probs=51.6
Q ss_pred CCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEE
Q 015172 88 LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVI 167 (412)
Q Consensus 88 ~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIi 167 (412)
..|...+||+|+||+|+||++++-.|+..|. +|...|.... +....+.|.........+. ..-...-+..+|.|+.
T Consensus 22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~Iyh 97 (350)
T KOG1429|consen 22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYH 97 (350)
T ss_pred ccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhh
Confidence 3455679999999999999999999999997 9999998642 1222233332111111111 1111236789999998
Q ss_pred cCC
Q 015172 168 PAG 170 (412)
Q Consensus 168 aag 170 (412)
.|.
T Consensus 98 LAa 100 (350)
T KOG1429|consen 98 LAA 100 (350)
T ss_pred hcc
Confidence 764
No 275
>PRK08263 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.037 Score=53.40 Aligned_cols=34 Identities=12% Similarity=-0.061 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.|.|+||+|.+|..++..++.+|. +|++.|.+.
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 37 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT 37 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 4689999999999999999999997 899999875
No 276
>PRK06181 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.062 Score=51.12 Aligned_cols=34 Identities=29% Similarity=0.322 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~ 35 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNE 35 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999997 999999875
No 277
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.92 E-value=0.045 Score=52.96 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~ 38 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKE 38 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5789999999999999999999998 999999875
No 278
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.91 E-value=0.05 Score=56.57 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=60.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
...+|+|+|+ |.+|..++..+...|. +|+.+|+++.+ ..+..+ . ... .+.+++++++|+||.+.|
T Consensus 201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G--~~~------~~~~e~v~~aDVVI~atG 266 (413)
T cd00401 201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G--YEV------MTMEEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C--CEE------ccHHHHHcCCCEEEECCC
Confidence 3579999998 9999999999999997 89999998732 222211 1 111 123457899999999965
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHH-HHhhCCCeEEEEEcCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEA-VADNCPDAFIHIISNP 212 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~-i~~~~p~aiviv~TNP 212 (412)
.+ .++. .. ++...+++++++++.+
T Consensus 267 ~~---------------~~i~---~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 NK---------------DIIT---GEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CH---------------HHHH---HHHHhcCCCCcEEEEeCCC
Confidence 33 2222 22 3333378999998865
No 279
>PRK05650 short chain dehydrogenase; Provisional
Probab=95.90 E-value=0.078 Score=50.86 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|+|.|+||+|.+|..++..|+..|. .|++.|.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~ 34 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE 34 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4789999999999999999999998 899999875
No 280
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.039 Score=52.19 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~ 49 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE 49 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 899999875
No 281
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.89 E-value=0.076 Score=52.08 Aligned_cols=68 Identities=22% Similarity=0.209 Sum_probs=44.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEE-EEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALH-LYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~-L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
++||+|||. |.||..++..+... ++ +|+ ++|.+..+. .++... ... .. ..+++++.+.++|+||+++
T Consensus 6 ~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~a--~~~a~~-~g~-~~---~~~~~eell~~~D~Vvi~t 75 (271)
T PRK13302 6 ELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQRH--ADFIWG-LRR-PP---PVVPLDQLATHADIVVEAA 75 (271)
T ss_pred eeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHHH--HHHHHh-cCC-Cc---ccCCHHHHhcCCCEEEECC
Confidence 479999998 99999999888763 44 665 788875221 112111 000 01 1246777778999999996
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
+
T Consensus 76 p 76 (271)
T PRK13302 76 P 76 (271)
T ss_pred C
Confidence 4
No 282
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.054 Score=51.86 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|++|..++..++.+|. +|++.|.+.
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~ 44 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTE 44 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46899999999999999999999998 999999975
No 283
>PRK14982 acyl-ACP reductase; Provisional
Probab=95.88 E-value=0.049 Score=55.20 Aligned_cols=71 Identities=28% Similarity=0.383 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++|.|+||+|.||+.++..|+...-+.+|++++.+.. .....++.+ . .+ .++++++.++|+||.+++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~----~---~i---~~l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG----G---KI---LSLEEALPEADIVVWVAS 224 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc----c---cH---HhHHHHHccCCEEEECCc
Confidence 46899999989999999999976422458999998752 222222211 1 11 245678999999999988
Q ss_pred CCC
Q 015172 171 VPR 173 (412)
Q Consensus 171 ~p~ 173 (412)
.+.
T Consensus 225 ~~~ 227 (340)
T PRK14982 225 MPK 227 (340)
T ss_pred CCc
Confidence 774
No 284
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.87 E-value=0.025 Score=52.79 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
-..++|+|||-+..||.++|.+|+.++- .|.+.|++.-. .....+.|..++ .... +.++.+.++.|||||.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~~--~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTDE--EAMTLDCLSQSDVVITG 133 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccch--hhHHHHHhhhCCEEEEc
Confidence 3457999999988999999999999987 99999987511 111112222211 0000 11256678999999999
Q ss_pred CCCCC
Q 015172 169 AGVPR 173 (412)
Q Consensus 169 ag~p~ 173 (412)
+|.|.
T Consensus 134 vG~~~ 138 (197)
T cd01079 134 VPSPN 138 (197)
T ss_pred cCCCC
Confidence 98773
No 285
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.85 E-value=0.019 Score=54.04 Aligned_cols=94 Identities=21% Similarity=0.254 Sum_probs=58.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKP 175 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~ 175 (412)
|+|+||+|.+|..++..|...+. +|+.+=.+........|.+........++.-..++.++|+|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH-- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC--
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch--
Confidence 78999999999999999999887 78887666533233334443221101122122456678999999999865332
Q ss_pred CCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 176 GMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 176 g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
....+....+++...+..
T Consensus 77 --------~~~~~~~~~li~Aa~~ag 94 (233)
T PF05368_consen 77 --------PSELEQQKNLIDAAKAAG 94 (233)
T ss_dssp --------CCHHHHHHHHHHHHHHHT
T ss_pred --------hhhhhhhhhHHHhhhccc
Confidence 111344455666666555
No 286
>PRK06924 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.044 Score=51.74 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|++|.|+||+|.+|..++..|+.+|. +|++.+.+.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 35799999999999999999999998 899999865
No 287
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.84 E-value=0.064 Score=50.87 Aligned_cols=34 Identities=35% Similarity=0.339 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4699999999999999999999997 899999875
No 288
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.061 Score=49.65 Aligned_cols=76 Identities=26% Similarity=0.323 Sum_probs=47.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc--CCCCceeeecCCCcHHhhcC---CCcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC--NTPSQVLDFTGPEELASALK---GVNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~--~~~~~v~~i~~t~d~~~al~---~aDiVIi 167 (412)
+++|.|+||+|.+|..++..|+.+ . +|+++|.+.... .++.+. .......+++...++++.++ +.|+||.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERL--DELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHH--HHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999999888 5 899999875221 111110 01000112211223333343 6999999
Q ss_pred cCCCCC
Q 015172 168 PAGVPR 173 (412)
Q Consensus 168 aag~p~ 173 (412)
++|.+.
T Consensus 78 ~ag~~~ 83 (227)
T PRK08219 78 NAGVAD 83 (227)
T ss_pred CCCcCC
Confidence 998753
No 289
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.051 Score=52.19 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++++.+.
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~ 41 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP 41 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 36899999999999999999999998 999999875
No 290
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.065 Score=50.29 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++++.|+|++|.+|..++..++.+|. .|++.|.+.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 40 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ 40 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 56799999999999999999999998 899999875
No 291
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.1 Score=50.11 Aligned_cols=114 Identities=17% Similarity=0.199 Sum_probs=63.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhccc---CCCCceeeecCCCcHHhh------cCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC---NTPSQVLDFTGPEELASA------LKGV 162 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~---~~~~~v~~i~~t~d~~~a------l~~a 162 (412)
+.+.|+||+|.+|..++..|+..|. +|++.|.+. ......++... .......+++...+.++. +...
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 4678899999999999999999998 899999875 22222233221 100000112111122222 2468
Q ss_pred cEEEEcCCCCCCC---CCchhh---HHHhh----HHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 163 NVVVIPAGVPRKP---GMTRDD---LFNIN----ANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 163 DiVIiaag~p~k~---g~~r~d---l~~~N----~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
|++|..+|.+... ..+..+ .+..| ..+.+.+.+.+.+.. .+.||++|
T Consensus 87 D~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~is 143 (263)
T PRK08339 87 DIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYST 143 (263)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 9999999875421 122222 23334 345666666665543 34454544
No 292
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.072 Score=51.71 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.+.|+||+|.+|..++..|+..|. .|++.|.+.
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~ 40 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGA--RVVLGDVDK 40 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4688999999999999999999998 899999876
No 293
>PRK06179 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.065 Score=51.27 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++.+|. +|++.+.+.
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 4799999999999999999999998 899999875
No 294
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.78 E-value=0.078 Score=50.37 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|+++|.+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 36899999999999999999999998 999999876
No 295
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.76 E-value=0.026 Score=51.50 Aligned_cols=55 Identities=29% Similarity=0.480 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCCc-HHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 92 ASFKVAVLGAAGGI-GQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 92 ~~~KV~VIGAaG~v-G~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
..+||.|||+ |.| |..++..|...|. .|.+.+.+. .++.+.+++||+||.+.+
T Consensus 43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence 3579999999 875 8889999999887 788887531 245568999999999987
Q ss_pred CC
Q 015172 171 VP 172 (412)
Q Consensus 171 ~p 172 (412)
.|
T Consensus 97 ~~ 98 (168)
T cd01080 97 KP 98 (168)
T ss_pred CC
Confidence 76
No 296
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.063 Score=52.05 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=54.9
Q ss_pred ceEE-EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCC-ce-eeecCCCcHHhh------cCCC
Q 015172 94 FKVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPS-QV-LDFTGPEELASA------LKGV 162 (412)
Q Consensus 94 ~KV~-VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~-~v-~~i~~t~d~~~a------l~~a 162 (412)
+|+. |.|| |.+|..++..++ .|. +|++.|.+.. .....++.+..... .+ -+++...+.++. +...
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4554 4565 999999999886 776 9999998752 22222232211100 01 122111111111 3468
Q ss_pred cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhh
Q 015172 163 NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 163 DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
|++|..||.... ..+-.+.+..|+.-...+.+.+.++
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~ 114 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKV 114 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999997532 2233445666765555555555443
No 297
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.063 Score=50.80 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~ 41 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA 41 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 36899999999999999999999997 899999875
No 298
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.74 E-value=0.037 Score=59.34 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=46.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||..+|..+...|. +|+.||.........++ ... . .++++.+++||+|++..
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~-~---~~l~ell~~aDiV~l~l 202 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVE-L---VSLDELLARADFITLHT 202 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCE-E---EcHHHHHhhCCEEEEcc
Confidence 3578999998 9999999999998888 99999975321111111 111 1 15777899999999985
No 299
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=95.74 E-value=0.031 Score=56.23 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=49.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+++|||+ |.+|...+..+....-+.+|.++|++. ....+.++.+. ...+. ...+.++++++||+||.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~---~~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVR---AATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEE---EeCCHHHHhccCCEEEEec
Confidence 478999998 999998766555544457999999987 33344444322 11122 2357788999999999874
No 300
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.73 E-value=0.04 Score=52.68 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36789999999999999999999998 999999875
No 301
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.73 E-value=0.068 Score=55.04 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=45.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCC-CCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT-PSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~-~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++||+|+||+|++|..+...|..++.. +|+++..+...+....-.+... ......+. ..+.+ .++++|+|+.+.+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~~~-~~~~~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVKDA-DFSDVDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCCHH-HhcCCCEEEEcCC
Confidence 4579999999999999999999888532 8888876542221111111100 01111111 12222 4799999999853
No 302
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.71 E-value=0.095 Score=50.15 Aligned_cols=112 Identities=14% Similarity=0.174 Sum_probs=61.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCC-CCCeEEEEecCch---hhhhhhhcccCC-CCce--eeecCCCcHHhhc------
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSP-LVSALHLYDVMNV---KGVAADLSHCNT-PSQV--LDFTGPEELASAL------ 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~g-l~~ev~L~Di~~~---~g~~~dL~~~~~-~~~v--~~i~~t~d~~~al------ 159 (412)
.++|.|+||+|.+|..++..++.+| . .|++.+.+.. .....++..... .... -+++...+.++.+
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 3579999999999999999999884 6 8999998752 222333332111 1000 1121112211111
Q ss_pred CCCcEEEEcCCCCCCCCCch---h---hHHHhhHH----HHHHHHHHHHhhCCCeEE
Q 015172 160 KGVNVVVIPAGVPRKPGMTR---D---DLFNINAN----IVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~g~~r---~---dl~~~N~~----i~~~i~~~i~~~~p~aiv 206 (412)
.+.|++|..+|......... . +.+..|.. +.+.+.+.+.+.....++
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv 142 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQII 142 (253)
T ss_pred CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEE
Confidence 37999999888753221111 1 23455543 335566666654443444
No 303
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.052 Score=53.29 Aligned_cols=36 Identities=19% Similarity=0.083 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..++|.|+||+|++|..++..|+..|. +|++.+.+.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~ 50 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNL 50 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346799999999999999999999998 899999875
No 304
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.69 E-value=0.063 Score=49.96 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++.+|. +|.+++.++
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 6899999999999999999999998 899999876
No 305
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.69 E-value=0.089 Score=51.67 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 36799999999999999999999998 999999986
No 306
>PRK08223 hypothetical protein; Validated
Probab=95.69 E-value=0.059 Score=53.36 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ .++.|+|-|.
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 58999998 9999999999999996 7999999985
No 307
>PRK09135 pteridine reductase; Provisional
Probab=95.69 E-value=0.14 Score=47.89 Aligned_cols=105 Identities=23% Similarity=0.279 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCC-C-ce-eeecCCCcHHhh-------cC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTP-S-QV-LDFTGPEELASA-------LK 160 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~-~-~v-~~i~~t~d~~~a-------l~ 160 (412)
++|.|+||+|++|..++..++..|. +|+++|... ......++.+.... . .+ .+++-..+.... +.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999998 999999753 22222223221100 0 00 011111112222 23
Q ss_pred CCcEEEEcCCCCCC-C-C-Cc---hhhHHHhhHHHHHHHHHHHHhh
Q 015172 161 GVNVVVIPAGVPRK-P-G-MT---RDDLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 161 ~aDiVIiaag~p~k-~-g-~~---r~dl~~~N~~i~~~i~~~i~~~ 200 (412)
+.|+||.++|.... + . .+ ..+.+..|+.-...+.+.+.++
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~ 130 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQ 130 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 68999999985321 1 1 11 2334556766555555555443
No 308
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=95.67 E-value=0.06 Score=55.02 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=45.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHH-hCCCC-CeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIK-MSPLV-SALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~-~~gl~-~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
+||+|+||+|.||+.+...|. .+.+- .+++++......+........ ...+.. .++. +.+++.|+|+.++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~~-~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFDI-DALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Cccc-ccccCCCEEEEcCC
Confidence 489999999999999998888 55542 588888775432222222111 112222 2222 36899999999976
No 309
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.67 E-value=0.062 Score=55.01 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=43.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
|+||+|+||+|.+|.-+...++. ..+ ..+++++.....-+....+... . ...+. ..+. +.++++|+|+.++|
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~--~--~~v~~-~~~~-~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK--E--GTLQD-AFDI-DALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC--c--ceEEe-cCCh-hHhcCCCEEEECCC
Confidence 47999999999999999974554 455 3458887654321121122221 1 11121 1233 35899999999875
No 310
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.67 E-value=0.076 Score=49.60 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 68999998 9999999999999996 7899999874
No 311
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.67 E-value=1.1 Score=44.68 Aligned_cols=33 Identities=33% Similarity=0.593 Sum_probs=30.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||.|+|+ |.+|..++..|+..|+ ++|+|+|-+.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gv-g~I~IvD~D~ 33 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGF-RNIHVIDMDT 33 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 6899998 9999999999999996 7999999875
No 312
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.65 E-value=0.064 Score=55.96 Aligned_cols=91 Identities=18% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|+|. |.+|..+|..+...|. +|+.+|+++.+..... .+ . ..+ .+++++++++|+||.+.|.
T Consensus 211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~-~~-G--~~v------~~l~eal~~aDVVI~aTG~ 277 (425)
T PRK05476 211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAA-MD-G--FRV------MTMEEAAELGDIFVTATGN 277 (425)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHH-hc-C--CEe------cCHHHHHhCCCEEEECCCC
Confidence 3568999998 9999999999999997 8999999873221110 01 1 111 1345678999999998542
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
+ .++.. ..++..-+++++++++-.
T Consensus 278 ~---------------~vI~~--~~~~~mK~GailiNvG~~ 301 (425)
T PRK05476 278 K---------------DVITA--EHMEAMKDGAILANIGHF 301 (425)
T ss_pred H---------------HHHHH--HHHhcCCCCCEEEEcCCC
Confidence 2 22221 122222378899888744
No 313
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.094 Score=49.74 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 43 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHL 43 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 35788999999999999999999998 999999875
No 314
>PRK07478 short chain dehydrogenase; Provisional
Probab=95.64 E-value=0.14 Score=48.51 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~ 40 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQ 40 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999998 899999875
No 315
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.64 E-value=0.11 Score=48.41 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~ 129 (412)
+++|.|+||+|.+|..++..++..|. ++++. +.+.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 35899999999999999999999997 88888 8875
No 316
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.64 E-value=0.05 Score=51.59 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. .|+++|.++
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~ 45 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA 45 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence 46899999999999999999999998 999999975
No 317
>PRK08251 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.18 Score=47.48 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. .|++.|.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~ 36 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRT 36 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 5789999999999999999999997 899999876
No 318
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=95.62 E-value=0.11 Score=49.44 Aligned_cols=116 Identities=16% Similarity=0.229 Sum_probs=63.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC-ce-eeecCCCcHHh-------hcCCCcE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS-QV-LDFTGPEELAS-------ALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~-------al~~aDi 164 (412)
+.+.|+|++|.+|..++..++..|. +|++.|.........++....... .+ .+++-..+.++ .+...|+
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~ 88 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHIDI 88 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5688999999999999999999998 899988765222222222111000 00 01111111221 2346899
Q ss_pred EEEcCCCCCC-C--CCch---hhHHHhhHHH----HHHHHHHHHhhCCCeEEEEEcC
Q 015172 165 VVIPAGVPRK-P--GMTR---DDLFNINANI----VKTLVEAVADNCPDAFIHIISN 211 (412)
Q Consensus 165 VIiaag~p~k-~--g~~r---~dl~~~N~~i----~~~i~~~i~~~~p~aiviv~TN 211 (412)
+|.++|.... + +.+. .+.+..|+.- .+.+.+.+.+..+.+.+++++.
T Consensus 89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 89 LVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 9999987531 1 1122 2234555543 3344444444334566666553
No 319
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=95.60 E-value=0.074 Score=52.19 Aligned_cols=34 Identities=26% Similarity=0.449 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 31 s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~ 64 (268)
T PRK15116 31 AHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD 64 (268)
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 68999998 9999999999999995 6999999874
No 320
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=95.59 E-value=0.092 Score=49.17 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++.+|. +|++++.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~ 40 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG 40 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36899999999999999999999998 899999875
No 321
>PRK09291 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.15 Score=48.05 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=48.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCc--eeeecCCCcHHhhcC-CCcEEEEc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQ--VLDFTGPEELASALK-GVNVVVIP 168 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~--v~~i~~t~d~~~al~-~aDiVIia 168 (412)
++|.|+||+|.+|..++..|+..|. +|++.+.+.. .....+......... ..+++...+...++. +.|+||..
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ 80 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN 80 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence 4799999999999999999999997 8999888652 111111111111110 112222223333444 89999999
Q ss_pred CCCCC
Q 015172 169 AGVPR 173 (412)
Q Consensus 169 ag~p~ 173 (412)
+|.+.
T Consensus 81 ag~~~ 85 (257)
T PRK09291 81 AGIGE 85 (257)
T ss_pred CCcCC
Confidence 98753
No 322
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.59 E-value=0.13 Score=51.30 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+.+.|+||+|.+|..+|..++..|. +|++.|+++
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~ 87 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNP 87 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCH
Confidence 45788999999999999999999998 899999986
No 323
>PRK06523 short chain dehydrogenase; Provisional
Probab=95.58 E-value=0.056 Score=51.35 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999998 899999875
No 324
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.57 E-value=0.044 Score=55.15 Aligned_cols=72 Identities=19% Similarity=0.312 Sum_probs=50.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.++|+|||+ |.+|...+..+.. .+ +.+|.++|++. ++..+.++.+. .. .. +....|++++++++|+||.+.
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~-~~~V~v~~R~~~~a~~l~~~~~~~-~g--~~-v~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRP-IREVRVWARDAAKAEAYAADLRAE-LG--IP-VTVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHhhc-cC--ce-EEEeCCHHHHHccCCEEEEee
Confidence 468999998 9999998877775 45 57999999986 33444444321 11 11 122467888999999999884
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
.
T Consensus 206 ~ 206 (330)
T PRK08291 206 P 206 (330)
T ss_pred C
Confidence 3
No 325
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.56 E-value=0.096 Score=49.07 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+|++|.+|..++..|+..|. +|++.+.+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~ 41 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE 41 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999998 999999875
No 326
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.56 E-value=0.093 Score=49.13 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++++.+.
T Consensus 9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~ 43 (245)
T PRK07060 9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNA 43 (245)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 36899999999999999999999998 899999875
No 327
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=95.55 E-value=0.072 Score=50.48 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~ 43 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA 43 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 35799999999999999999999998 999999875
No 328
>PRK07677 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.12 Score=48.94 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. .|++.|.+.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~ 35 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTK 35 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5788999999999999999999998 899999875
No 329
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.55 E-value=0.075 Score=50.54 Aligned_cols=35 Identities=31% Similarity=0.293 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~ 41 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDA 41 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35789999999999999999999998 899999876
No 330
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.55 E-value=0.041 Score=54.17 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcc--cCCCCceeeecCC-CcHHhhcCCCcEEEE
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSH--CNTPSQVLDFTGP-EELASALKGVNVVVI 167 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~--~~~~~~v~~i~~t-~d~~~al~~aDiVIi 167 (412)
.+.||+.||. |-+-.+........+....++-+|+++ +...+..+.. ......+..+++. .+...++++.|+|++
T Consensus 120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence 3569999997 998777664443333323788999997 3333333332 1112223333221 123345899999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEE
Q 015172 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHII 209 (412)
Q Consensus 168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~ 209 (412)
++=+ .-+.+-+.++...+.+++ |++.+++=
T Consensus 199 AalV------------g~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 199 AALV------------GMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -TT-------------S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhhc------------ccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 9632 223445777888888887 78877543
No 331
>PRK06914 short chain dehydrogenase; Provisional
Probab=95.54 E-value=0.15 Score=49.01 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.+.|+||+|.+|..++..++.+|. .|++++.+.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 4689999999999999999999998 899999875
No 332
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.54 E-value=0.077 Score=58.04 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=79.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH----HhhcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL----ASALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~----~~al~~aDiVIia 168 (412)
..+|.|+|. |.+|+.++..|..+|+ +++++|.|+.. +..+.+...+....+- +|. +..+++||.||++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~~v~~GDa---t~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGMKVFYGDA---TRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCCeEEEEeC---CCHHHHHhcCCCcCCEEEEE
Confidence 468999998 9999999999999998 99999998732 1122222211111111 222 1356799999998
Q ss_pred CCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc-CCCCCcHHHHHHHHHHhCCCCCCCeEeccccchHHHH
Q 015172 169 AGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS-NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRAN 247 (412)
Q Consensus 169 ag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T-NPv~~~~pI~t~i~~~~sg~~~~kviGlt~Lds~R~~ 247 (412)
...+ ..| ..++..+++..|+..+++-+ |+.+ .+.+++.+ -+.++--+.-.+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence 3211 334 34555666678887654433 4333 23334442 3344333443444555
Q ss_pred HHHHHHcCCCCCCe
Q 015172 248 TFVAQKKNLKLIDV 261 (412)
Q Consensus 248 ~~la~~l~v~~~~V 261 (412)
+.+-+.+|++++++
T Consensus 528 ~~~L~~lg~~~~~~ 541 (621)
T PRK03562 528 RLVLESLGLGPYEA 541 (621)
T ss_pred HHHHHHcCCCHHHH
Confidence 55556777765443
No 333
>PRK07877 hypothetical protein; Provisional
Probab=95.53 E-value=0.046 Score=60.63 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||+|+|+ | +|+.+|..|+..|++++|+|+|-|.
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ 141 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDT 141 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence 468999998 9 9999999999999878999999985
No 334
>PRK06500 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.11 Score=48.84 Aligned_cols=104 Identities=20% Similarity=0.170 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCc-------HHhhcCCCcE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEE-------LASALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d-------~~~al~~aDi 164 (412)
++|.|+||+|.+|..++..++..|. +|++.|.+.. .....++.. .......+++...+ ..+.+.+.|+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 83 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELGE-SALVIRADAGDVAAQKALAQALAEAFGRLDA 83 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhCC-ceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 5899999999999999999999998 8999998752 111111110 00000001110011 1122357899
Q ss_pred EEEcCCCCCCCC---Cchh---hHHHhhHHHHHHHHHHHHhh
Q 015172 165 VVIPAGVPRKPG---MTRD---DLFNINANIVKTLVEAVADN 200 (412)
Q Consensus 165 VIiaag~p~k~g---~~r~---dl~~~N~~i~~~i~~~i~~~ 200 (412)
||..+|...... .+.. ..+..|+.-...+.+.+.++
T Consensus 84 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~ 125 (249)
T PRK06500 84 VFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPL 125 (249)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999998643211 1222 23456666555666666543
No 335
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.52 E-value=0.099 Score=49.15 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 35899999999999999999999997 899999875
No 336
>PRK12742 oxidoreductase; Provisional
Probab=95.52 E-value=0.12 Score=48.18 Aligned_cols=34 Identities=24% Similarity=0.250 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
.++|.|+||+|.+|..++..++..|. +|++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 36899999999999999999999998 88887653
No 337
>PRK09186 flagellin modification protein A; Provisional
Probab=95.51 E-value=0.13 Score=48.66 Aligned_cols=35 Identities=23% Similarity=0.197 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..|+..|. +|++.+.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 36899999999999999999999998 899998875
No 338
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.51 E-value=0.075 Score=54.17 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ +++.|+|-+.
T Consensus 29 ~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT 62 (355)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 68999998 9999999999999996 7999999985
No 339
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.12 Score=48.82 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEe
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYD 126 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~D 126 (412)
++|.|+||+|.+|..++..++.+|. +|++.+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~ 37 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHY 37 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence 6899999999999999999999997 777754
No 340
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.072 Score=51.15 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..|+..|. .|++.+.+.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~ 39 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGA--RVAIGDLDE 39 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5799999999999999999999998 899999876
No 341
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.51 E-value=0.042 Score=54.72 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=50.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+|+|||+ |.+|...+..+.. .++ .+|+++|++. +...+.++... ...+. ..+.++++.++|+||.+.
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~~~-~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT 196 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGLPV-RRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTAT 196 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEcc
Confidence 468999998 9999999988865 564 6899999987 33444444322 11111 256777899999999985
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
.
T Consensus 197 ~ 197 (304)
T PRK07340 197 T 197 (304)
T ss_pred C
Confidence 4
No 342
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.51 E-value=0.065 Score=55.70 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=68.9
Q ss_pred HhhhhhhhhhhccCCCCC---CCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCce
Q 015172 70 RSTFARKAQSSEQRPQYA---LQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV 146 (412)
Q Consensus 70 ~~~f~~~~~~~~~~~~~~---~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v 146 (412)
|++....+..+++.-... ..--..++|+|||. |.+|..+|..+...|. +|.-||..... +. . ..
T Consensus 125 R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~-G~IG~~vA~~~~~fGm--~V~~~d~~~~~----~~-----~-~~ 191 (409)
T PRK11790 125 RGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGY-GHIGTQLSVLAESLGM--RVYFYDIEDKL----PL-----G-NA 191 (409)
T ss_pred cChHHHHHHHHcCcccccccCcccCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCccc----cc-----C-Cc
Confidence 776655554443321111 11124579999998 9999999999888888 99999974210 00 0 01
Q ss_pred eeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc--CCCC
Q 015172 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS--NPVN 214 (412)
Q Consensus 147 ~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T--NPv~ 214 (412)
. ...++++.++.||+|++.. |..+ ++-.++. .+.+...-|++++|+++ .-+|
T Consensus 192 ~---~~~~l~ell~~sDiVslh~--Plt~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 192 R---QVGSLEELLAQSDVVSLHV--PETP---------STKNMIG--AEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred e---ecCCHHHHHhhCCEEEEcC--CCCh---------HHhhccC--HHHHhcCCCCeEEEECCCCcccC
Confidence 1 1246788999999999984 3211 1222221 11222223789998886 4455
No 343
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.51 E-value=0.061 Score=55.14 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|+|+ |.+|+.++..|+..|+ .+|+|+|-+.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 358999998 9999999999999995 6999999984
No 344
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.12 Score=48.22 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
.++|.|+||+|++|..++..++.+|. +|+++|..
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~ 39 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIH 39 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCc
Confidence 46899999999999999999999998 89998864
No 345
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.50 E-value=0.057 Score=48.94 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=49.6
Q ss_pred cCChhHHHHHHhhhhhhhhhhccCCCCCCCCCCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc
Q 015172 60 FLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH 139 (412)
Q Consensus 60 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~ 139 (412)
++-+.++++...++.. ++. +-..+||.|||.+..+|..++.+|..++. .|.+.+..
T Consensus 14 ~~~PcTp~aii~lL~~----------~~~-~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~----------- 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEY----------YGI-DLEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK----------- 69 (160)
T ss_dssp SS--HHHHHHHHHHHH----------TT--STTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------
T ss_pred CCcCCCHHHHHHHHHh----------cCC-CCCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------
Confidence 4445566666555422 111 23457999999988899999999999886 66666542
Q ss_pred cCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 140 CNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 140 ~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
|.++++.++.||+||.++|.|
T Consensus 70 ------------T~~l~~~~~~ADIVVsa~G~~ 90 (160)
T PF02882_consen 70 ------------TKNLQEITRRADIVVSAVGKP 90 (160)
T ss_dssp ------------SSSHHHHHTTSSEEEE-SSST
T ss_pred ------------CCcccceeeeccEEeeeeccc
Confidence 245566789999999999876
No 346
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=95.50 E-value=0.09 Score=52.06 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|++|..++..|+..|. +|++.|.+.
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~ 40 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL 40 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence 45799999999999999999999997 899999875
No 347
>PLN02858 fructose-bisphosphate aldolase
Probab=95.49 E-value=0.053 Score=64.31 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=50.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
+.+++|++||. |.||..+|..|+..|+ +|+.||++.... .++..... . ...+..+.+++||+||++..
T Consensus 322 ~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~--~~l~~~Ga----~---~~~s~~e~~~~aDvVi~~V~ 389 (1378)
T PLN02858 322 KPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVYKPTL--VRFENAGG----L---AGNSPAEVAKDVDVLVIMVA 389 (1378)
T ss_pred cCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHcCC----e---ecCCHHHHHhcCCEEEEecC
Confidence 34589999998 9999999999999998 999999976221 12222211 0 12456678899999999865
Q ss_pred C
Q 015172 171 V 171 (412)
Q Consensus 171 ~ 171 (412)
.
T Consensus 390 ~ 390 (1378)
T PLN02858 390 N 390 (1378)
T ss_pred C
Confidence 3
No 348
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.49 E-value=0.098 Score=49.81 Aligned_cols=115 Identities=16% Similarity=0.242 Sum_probs=62.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCC--CceeeecCCCcHHh-------hcCCCcE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTP--SQVLDFTGPEELAS-------ALKGVNV 164 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~--~~v~~i~~t~d~~~-------al~~aDi 164 (412)
+++.|+||+|.+|..++..|+..|. +|++.+.+........+...... ....+++...+.++ .+...|+
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~ 86 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI 86 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 5788999999999999999999998 99999876422211122111100 00011211112222 2346899
Q ss_pred EEEcCCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172 165 VVIPAGVPRKP---GMTRD---DLFNINAN----IVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 165 VIiaag~p~k~---g~~r~---dl~~~N~~----i~~~i~~~i~~~~p~aiviv~T 210 (412)
+|..+|..... ..+.. ..+..|+. +.+.+.+.+.+....+.|++++
T Consensus 87 lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~is 142 (251)
T PRK12481 87 LINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIA 142 (251)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 99999875321 11222 23445543 3444455554433335555554
No 349
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.47 E-value=0.076 Score=51.09 Aligned_cols=35 Identities=23% Similarity=0.219 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
|++|.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35789999999999999999999998 999999875
No 350
>PRK07576 short chain dehydrogenase; Provisional
Probab=95.47 E-value=0.093 Score=50.38 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. .|++.|.+.
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~ 43 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ 43 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999998 899999875
No 351
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.47 E-value=0.11 Score=48.63 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|..++..|+..|+ +.++++|-+.
T Consensus 22 s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~ 55 (197)
T cd01492 22 ARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT 55 (197)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 58999998 9999999999999996 7999999874
No 352
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=95.46 E-value=0.21 Score=47.08 Aligned_cols=37 Identities=24% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+.++|.|+|++|.+|..++..|+..|. +|+++|.+.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~ 46 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTE 46 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCH
Confidence 3457899999999999999999999997 999999986
No 353
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.44 E-value=0.089 Score=54.58 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=58.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|+|. |.+|..+|..+...|. +|+.+|+++.+.... ..+ . ..+ .+.+++++++|+||.+.|.
T Consensus 194 ~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G--~~v------~~leeal~~aDVVItaTG~ 260 (406)
T TIGR00936 194 AGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-G--FRV------MTMEEAAKIGDIFITATGN 260 (406)
T ss_pred CcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-C--CEe------CCHHHHHhcCCEEEECCCC
Confidence 4579999998 9999999999998887 899999987321110 111 1 111 1234678999999998542
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
+ .++.. +.+...-+++++++++-.
T Consensus 261 ~---------------~vI~~--~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 261 K---------------DVIRG--EHFENMKDGAIVANIGHF 284 (406)
T ss_pred H---------------HHHHH--HHHhcCCCCcEEEEECCC
Confidence 2 22221 122222378899888653
No 354
>PRK06444 prephenate dehydrogenase; Provisional
Probab=95.44 E-value=0.049 Score=51.05 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH 123 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~ 123 (412)
|||+|||++|.||..++..+...|+ +|+
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGL--GVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCC--EEE
Confidence 6999999999999999999988897 653
No 355
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.43 E-value=0.055 Score=54.10 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=48.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+|+|||+ |.+|..++..+.. .+ +.+|+++|++. ....+.++.+... .+. ...+.++++++||+||.+.
T Consensus 125 ~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~g~--~~~---~~~~~~~av~~aDIVi~aT 197 (314)
T PRK06141 125 ASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQGF--DAE---VVTDLEAAVRQADIISCAT 197 (314)
T ss_pred CceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhcCC--ceE---EeCCHHHHHhcCCEEEEee
Confidence 468999998 9999999875554 55 46999999986 3444444433211 122 1356677899999997764
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
.
T Consensus 198 ~ 198 (314)
T PRK06141 198 L 198 (314)
T ss_pred C
Confidence 3
No 356
>PRK06153 hypothetical protein; Provisional
Probab=95.43 E-value=0.072 Score=54.74 Aligned_cols=35 Identities=29% Similarity=0.626 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||+|||+ |.+|+.++..|+..|+ .+++|+|-|.
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~GV-geI~LVD~D~ 210 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKTPV-REIHLFDGDD 210 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHcCC-CEEEEECCCE
Confidence 358999998 9999999999999996 7999999985
No 357
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.43 E-value=0.059 Score=56.80 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-hhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-VAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
-..++|+|+|. |.||..+|..+...|. +|..+|+++... .+.. + . . . ..++++.++.+|+||.+.
T Consensus 252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~--~----~~~leell~~ADIVI~at 317 (476)
T PTZ00075 252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--Y--Q----VVTLEDVVETADIFVTAT 317 (476)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--c--e----eccHHHHHhcCCEEEECC
Confidence 34578999998 9999999999998897 899999886322 1111 1 1 1 1 124567899999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
|.+ .++. .+.++..-|++++++++-.
T Consensus 318 Gt~---------------~iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 GNK---------------DIIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred Ccc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence 532 1111 1233333489999998755
No 358
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.31 Score=46.81 Aligned_cols=34 Identities=35% Similarity=0.368 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..++..|. .|++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~ 34 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA 34 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4789999999999999999999997 899999875
No 359
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.42 E-value=0.081 Score=53.27 Aligned_cols=73 Identities=26% Similarity=0.331 Sum_probs=46.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-CCCCeEEEEecCchhhhh-hhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNVKGVA-ADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl~~ev~L~Di~~~~g~~-~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
++||+|+||.|.||+-+...|..+ ..+.++.++=...-.|.. .++..... .+... ..|.. .++++|+|+.++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~~~-~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AADEF-VFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--ccccc-ccccCCEEEEeCc
Confidence 479999999999999999999985 445667777654422221 22222211 11110 12333 5789999999986
No 360
>PRK08324 short chain dehydrogenase; Validated
Probab=95.40 E-value=0.12 Score=57.02 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..++|.|+||+|.+|..++..++..|. +|++.|++.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~ 456 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDE 456 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCH
Confidence 346899999999999999999999997 899999986
No 361
>PRK08589 short chain dehydrogenase; Validated
Probab=95.40 E-value=0.11 Score=50.04 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccCCC--CceeeecCCCcHH-------hhcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCNTP--SQVLDFTGPEELA-------SALKGV 162 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~~~--~~v~~i~~t~d~~-------~al~~a 162 (412)
.+++.|+||+|.+|..++..++..|. +|++.|.++ ......++.+.... ...-+++...+.+ +.+...
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 83 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV 83 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 35789999999999999999999998 999999874 22223333221111 0001121111111 123468
Q ss_pred cEEEEcCCCC
Q 015172 163 NVVVIPAGVP 172 (412)
Q Consensus 163 DiVIiaag~p 172 (412)
|++|..+|..
T Consensus 84 d~li~~Ag~~ 93 (272)
T PRK08589 84 DVLFNNAGVD 93 (272)
T ss_pred CEEEECCCCC
Confidence 9999999875
No 362
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.39 E-value=0.064 Score=55.70 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=45.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcc-cCCCCceeeecCCCcHHhh-cCCCcEEEEcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSH-CNTPSQVLDFTGPEELASA-LKGVNVVVIPA 169 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~-~~~~~~v~~i~~t~d~~~a-l~~aDiVIiaa 169 (412)
|||.|+|+ |.+|..++..|...|. +++++|.++.... .+.+ ........+.+-...++++ ++++|.||++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~--~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLR--RLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 68999998 9999999999999998 9999999763211 1111 1111000111111223333 78999999984
No 363
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=95.39 E-value=0.2 Score=47.58 Aligned_cols=117 Identities=19% Similarity=0.184 Sum_probs=65.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCC-ce-eeecCCCcHH-------hhcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPS-QV-LDFTGPEELA-------SALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~-~v-~~i~~t~d~~-------~al~~ 161 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.+.. .....++....... .+ -+++...+.+ +.+..
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 36899999999999999999999998 8999998752 11111222111110 00 1111111121 11246
Q ss_pred CcEEEEcCCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHhh----CCCeEEEEEcC
Q 015172 162 VNVVVIPAGVPRKPG---MT---RDDLFNINANIVKTLVEAVADN----CPDAFIHIISN 211 (412)
Q Consensus 162 aDiVIiaag~p~k~g---~~---r~dl~~~N~~i~~~i~~~i~~~----~p~aiviv~TN 211 (412)
.|+||.++|...... .+ -.+.+..|+.-...+.+.+.++ .+.+.++++|.
T Consensus 90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 899999998642111 11 1223456666666666655544 23445555553
No 364
>PRK06198 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.15 Score=48.33 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCe-EEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSA-LHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~e-v~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. + |+++|.+.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~ 41 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNA 41 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCH
Confidence 36799999999999999999999987 6 99999875
No 365
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.38 E-value=0.086 Score=54.04 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|+|+ |.+|+.++..|+..|+ .+++|+|.+.
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d~ 169 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHDV 169 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 358999998 9999999999999995 7999999983
No 366
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.37 E-value=0.17 Score=48.74 Aligned_cols=113 Identities=19% Similarity=0.231 Sum_probs=71.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccC-CCCceeeecCC-------CcHHhhcCCCcE
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN-TPSQVLDFTGP-------EELASALKGVNV 164 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~-~~~~v~~i~~t-------~d~~~al~~aDi 164 (412)
-|.|.||++.+|..+|..++..|. .|+|..++. +...+.++.+.. .+. .-+++-. ....+.+.+.|+
T Consensus 8 v~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~-~~DVtD~~~~~~~i~~~~~~~g~iDi 84 (246)
T COG4221 8 VALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALAL-ALDVTDRAAVEAAIEALPEEFGRIDI 84 (246)
T ss_pred EEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEE-eeccCCHHHHHHHHHHHHHhhCcccE
Confidence 467779999999999999999999 999999986 455555555311 111 1111111 123345788999
Q ss_pred EEEcCCCCCCCCC------chhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172 165 VVIPAGVPRKPGM------TRDDLFNINANIVKTLVEAVADNC---PDAFIHIIS 210 (412)
Q Consensus 165 VIiaag~p~k~g~------~r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T 210 (412)
+|..||..+.... +-.+++..|+.-+-.....+-... ..+.||+.+
T Consensus 85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~ 139 (246)
T COG4221 85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLG 139 (246)
T ss_pred EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEec
Confidence 9999997653211 234467778765555555544332 245666654
No 367
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.36 E-value=0.093 Score=50.34 Aligned_cols=34 Identities=35% Similarity=0.390 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ .+++|+|-+.
T Consensus 12 ~~VlVvG~-GGvGs~va~~Lar~GV-g~i~LvD~D~ 45 (231)
T cd00755 12 AHVAVVGL-GGVGSWAAEALARSGV-GKLTLIDFDV 45 (231)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 58999998 9999999999999995 7999999875
No 368
>PRK06398 aldose dehydrogenase; Validated
Probab=95.35 E-value=0.083 Score=50.55 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. +|++.|.++
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~ 40 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE 40 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 36799999999999999999999998 999999875
No 369
>PRK08328 hypothetical protein; Provisional
Probab=95.34 E-value=0.093 Score=50.19 Aligned_cols=34 Identities=35% Similarity=0.613 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ ++++|+|-+.
T Consensus 28 ~~VlIiG~-GGlGs~ia~~La~~Gv-g~i~lvD~D~ 61 (231)
T PRK08328 28 AKVAVVGV-GGLGSPVAYYLAAAGV-GRILLIDEQT 61 (231)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence 58999998 9999999999999996 7999999875
No 370
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=95.34 E-value=0.051 Score=53.79 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=52.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+.||- |.||.+++..|...|+ .|+.||++. ..+.++.+.... +. ..+.|..++||+||...+.
T Consensus 34 s~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga~--v~-----~sPaeVae~sDvvitmv~~ 101 (327)
T KOG0409|consen 34 SKTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGAR--VA-----NSPAEVAEDSDVVITMVPN 101 (327)
T ss_pred ccceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhchh--hh-----CCHHHHHhhcCEEEEEcCC
Confidence 3579999998 9999999999999999 999999864 234455555422 22 2356678999999998654
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 102 ~ 102 (327)
T KOG0409|consen 102 P 102 (327)
T ss_pred h
Confidence 4
No 371
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.34 E-value=0.084 Score=54.52 Aligned_cols=34 Identities=29% Similarity=0.546 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||.|+|+ |.+|+.++..|+..|+ +.++|+|-+.
T Consensus 43 ~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~ 76 (392)
T PRK07878 43 ARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV 76 (392)
T ss_pred CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence 58999998 9999999999999996 6999999875
No 372
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.33 E-value=0.15 Score=48.01 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..|+.+|. +|++.|.+.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999998 999999976
No 373
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=95.32 E-value=0.083 Score=49.83 Aligned_cols=114 Identities=22% Similarity=0.342 Sum_probs=62.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCCCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKGVN 163 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~aD 163 (412)
++.|+|++|.+|..++..|+..|. +|++++.+. ......++.+..... ...+++...+..+ .+...|
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 588999999999999999999998 899999875 222222232211100 0011111111111 234679
Q ss_pred EEEEcCCCCC-CC--CCchhh---HHHhhHH----HHHHHHHHHHhhCCCeEEEEEc
Q 015172 164 VVVIPAGVPR-KP--GMTRDD---LFNINAN----IVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 164 iVIiaag~p~-k~--g~~r~d---l~~~N~~----i~~~i~~~i~~~~p~aiviv~T 210 (412)
+||.++|... .+ +.+..+ .+..|.. +.+.+.+.+.+....+.++++|
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 9999998642 11 223322 2334432 3445555555544445555443
No 374
>PRK08618 ornithine cyclodeaminase; Validated
Probab=95.32 E-value=0.066 Score=53.77 Aligned_cols=72 Identities=10% Similarity=0.195 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+|+|||+ |.+|...+..++. .+ +.+|.++|++.. ...+.++.+. ....+.. ..|++++++++|+||.+-
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~-~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~---~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRD-IERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV---VNSADEAIEEADIIVTVT 200 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCC-ccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEcc
Confidence 468999998 9999887766554 45 479999999863 3333334321 1211222 357788899999999984
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
.
T Consensus 201 ~ 201 (325)
T PRK08618 201 N 201 (325)
T ss_pred C
Confidence 3
No 375
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.32 E-value=0.14 Score=46.57 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=41.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
.++|+|||- |..|...|.+|.+.|+ +|++-..........--.+ . +. ..+++|+.+.||+|++.
T Consensus 4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~-G----f~----v~~~~eAv~~aDvV~~L 67 (165)
T PF07991_consen 4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKAD-G----FE----VMSVAEAVKKADVVMLL 67 (165)
T ss_dssp TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHT-T-----E----CCEHHHHHHC-SEEEE-
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHC-C----Ce----eccHHHHHhhCCEEEEe
Confidence 479999998 9999999999999999 8887776542111111111 1 11 13567899999999998
No 376
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.32 E-value=0.043 Score=55.68 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=44.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEE-EEecCchhhhh-hh-hcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALH-LYDVMNVKGVA-AD-LSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~-L~Di~~~~g~~-~d-L~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
+||+|+||+|.+|..++..|...+.+ +++ +++.+...+.. .+ ..+......+ .+. ..|.++.++++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~-~~~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDL-NLE-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCc-eee-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999998877543 666 66765422211 11 1111110011 121 1244444469999999854
No 377
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.31 E-value=0.14 Score=47.89 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++.+|. .|++.+.+.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~ 40 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV 40 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 36899999999999999999999997 888888764
No 378
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=95.30 E-value=0.05 Score=55.95 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.||+.+|..+...|. +|..+|..... . + .. . . ..++++.++.||+|++..
T Consensus 115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~----~--~~--~-~---~~~L~ell~~sDiI~lh~ 175 (378)
T PRK15438 115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R----G--DE--G-D---FRSLDELVQEADILTFHT 175 (378)
T ss_pred CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c----c--cc--c-c---cCCHHHHHhhCCEEEEeC
Confidence 3579999998 9999999999998898 99999963211 0 0 00 0 1 135778889999999874
No 379
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.30 E-value=0.12 Score=48.21 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=31.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. +|++.+.++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5899999999999999999999998 999999876
No 380
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.29 E-value=0.088 Score=54.83 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|+|+ |.||..++..+...|. .+|+++|.+..+ ..+.++. ..... ..++.+.+.++|+||.+.
T Consensus 181 ~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT 250 (423)
T PRK00045 181 SGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST 250 (423)
T ss_pred cCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence 3479999998 9999999998888774 589999997622 2222221 11111 135556789999999997
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
|.|.. ..+.+.++.... .+.....+++=.++|-|
T Consensus 251 ~s~~~---------~i~~~~l~~~~~--~~~~~~~vviDla~Prd 284 (423)
T PRK00045 251 GAPHP---------IIGKGMVERALK--ARRHRPLLLVDLAVPRD 284 (423)
T ss_pred CCCCc---------EEcHHHHHHHHh--hccCCCeEEEEeCCCCC
Confidence 76531 111222222111 11124578888899988
No 381
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.087 Score=49.10 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++|.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 35799999999999999999999998 999999876
No 382
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.27 E-value=0.065 Score=57.15 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=63.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc-hhhhhhhhcccC--CC-Cc--------eeeecCCCcH---
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN-VKGVAADLSHCN--TP-SQ--------VLDFTGPEEL--- 155 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~-~~g~~~dL~~~~--~~-~~--------v~~i~~t~d~--- 155 (412)
.+..||.|+|+ |.+|...+..+...|- +|+.+|+++ ....+..+-... .. .. .... +.++
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~--s~~~~~~ 237 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVM--SEEFIKA 237 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhc--chhHHHH
Confidence 44689999998 9999999988888896 899999987 233333321110 00 00 0001 1221
Q ss_pred -----HhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHH-HHHHHHHHHhhCCCeEEEEEcCC
Q 015172 156 -----ASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI-VKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 156 -----~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i-~~~i~~~i~~~~p~aiviv~TNP 212 (412)
.+.++++|+||.++|.|.++-. .+ .++..+.++ |.++|+.++.+
T Consensus 238 ~~~~~~~~~~gaDVVIetag~pg~~aP----------~lit~~~v~~mk---pGgvIVdvg~~ 287 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALIPGKPAP----------KLITAEMVASMK---PGSVIVDLAAE 287 (509)
T ss_pred HHHHHHhccCCCCEEEECCCCCcccCc----------chHHHHHHHhcC---CCCEEEEEccC
Confidence 2234789999999998743211 12 244444433 88877777654
No 383
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.26 E-value=0.14 Score=51.55 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=49.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHhh-------cCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELASA-------LKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~a-------l~~ 161 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.++ +.....++....... ...+++...+.++. +..
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 35799999999999999999999998 899999876 222222332211110 01122211222211 256
Q ss_pred CcEEEEcCCCC
Q 015172 162 VNVVVIPAGVP 172 (412)
Q Consensus 162 aDiVIiaag~p 172 (412)
.|++|..+|..
T Consensus 85 iD~lVnnAG~~ 95 (330)
T PRK06139 85 IDVWVNNVGVG 95 (330)
T ss_pred CCEEEECCCcC
Confidence 89999999874
No 384
>PRK08628 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.15 Score=48.40 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. .+++.+.++
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~ 41 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA 41 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence 5799999999999999999999998 899998876
No 385
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.15 Score=49.89 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=66.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC-ce-eeecCCCcHHhh-------cC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS-QV-LDFTGPEELASA-------LK 160 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~-~v-~~i~~t~d~~~a-------l~ 160 (412)
.++|.|+||+|.+|..++..++..|. +|++++.+. .......+....... .+ .+++...+.++. +.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999998 999999874 111222222111000 00 111111122222 24
Q ss_pred CCcEEEEcCCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcC
Q 015172 161 GVNVVVIPAGVPRK--P--GMTR---DDLFNINANIVKTLVEAVADNC-PDAFIHIISN 211 (412)
Q Consensus 161 ~aDiVIiaag~p~k--~--g~~r---~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TN 211 (412)
..|+||..+|.... + ..+. ...+..|+.-...+.+.+.++. +.+.+|++|.
T Consensus 124 ~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 124 RLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred CCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 67999999986321 1 1122 2345667666666666665543 4455555553
No 386
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.23 E-value=0.19 Score=50.47 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=48.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCC--ceeeecCCCcHHh-------hcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPS--QVLDFTGPEELAS-------ALKG 161 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-------al~~ 161 (412)
.++|.|+||+|.+|..++..++..|. +|++.+.++ ......++....... ...+++-..+.++ .+..
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 35799999999999999999999998 899999876 222223332211110 0012211112221 2347
Q ss_pred CcEEEEcCCCC
Q 015172 162 VNVVVIPAGVP 172 (412)
Q Consensus 162 aDiVIiaag~p 172 (412)
.|++|..+|..
T Consensus 86 iD~lInnAg~~ 96 (334)
T PRK07109 86 IDTWVNNAMVT 96 (334)
T ss_pred CCEEEECCCcC
Confidence 89999999864
No 387
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.23 E-value=0.047 Score=55.05 Aligned_cols=73 Identities=26% Similarity=0.307 Sum_probs=46.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCC--ceeeecCCCcHHh-hcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS--QVLDFTGPEELAS-ALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~--~v~~i~~t~d~~~-al~~aDiVIia 168 (412)
++||+|+||+|+.|..+...|+.++-+ |+.++.-.+..+....-.|..... .+. +. +-|.++ ..++||+||.+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~-~~-~~~~~~~~~~~~DvvFla 77 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLP-FQ-TIDPEKIELDECDVVFLA 77 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccc-cc-cCChhhhhcccCCEEEEe
Confidence 689999999999999999999998744 688887765333322222221111 111 11 112222 25679999998
No 388
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.046 Score=54.04 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+|.||.++|..|...|. .|.++... |.++++.+++||+||.+.|.
T Consensus 157 ~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 157 EGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGR 211 (284)
T ss_pred CCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCc
Confidence 357999999999999999999999997 88776211 12466678999999999987
Q ss_pred CC
Q 015172 172 PR 173 (412)
Q Consensus 172 p~ 173 (412)
|.
T Consensus 212 ~~ 213 (284)
T PRK14179 212 GH 213 (284)
T ss_pred cc
Confidence 73
No 389
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.22 E-value=0.097 Score=54.46 Aligned_cols=124 Identities=23% Similarity=0.237 Sum_probs=69.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh---hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK---GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~---g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.++|.|+|+ |.+|..+|..|+..|. +|+++|.+... ....+|.... +..+.+.. ..+.+.++|+||.++
T Consensus 5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~~-~~~~~~~~d~vv~~~ 76 (450)
T PRK14106 5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG----IELVLGEY-PEEFLEGVDLVVVSP 76 (450)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCCc-chhHhhcCCEEEECC
Confidence 368999998 8899999999999998 99999997521 1122232111 22222211 123467899999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC--CCcHHHHHHHHHHh
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV--NSTVPIAAEVLKQK 227 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv--~~~~pI~t~i~~~~ 227 (412)
|.+...-+ ....-..++++++......+.. + ..+|-+|-+. +++.-++..++...
T Consensus 77 g~~~~~~~-~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 77 GVPLDSPP-VVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CCCCCCHH-HHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 87532111 1111134555555444433322 2 2333444333 34445667777664
No 390
>PRK07411 hypothetical protein; Validated
Probab=95.22 E-value=0.099 Score=53.96 Aligned_cols=35 Identities=26% Similarity=0.523 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus 38 ~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~ 72 (390)
T PRK07411 38 AASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV 72 (390)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence 358999998 9999999999999996 7999999985
No 391
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.22 E-value=0.14 Score=48.54 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~ 41 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSA 41 (255)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 36799999999999999999999997 888876543
No 392
>PRK05872 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.095 Score=51.39 Aligned_cols=35 Identities=37% Similarity=0.389 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. .|++.|.+.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 43 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE 43 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45799999999999999999999998 899999876
No 393
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.21 E-value=0.14 Score=48.89 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=31.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++.+|. +|++.|.+.
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~ 39 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA 39 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 35799999999999999999999998 899999876
No 394
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=95.17 E-value=0.17 Score=48.01 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..|+..|. ++++.|.+.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~ 45 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINA 45 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 46899999999999999999999998 899999875
No 395
>PRK09242 tropinone reductase; Provisional
Probab=95.17 E-value=0.38 Score=45.56 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~ 43 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDA 43 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 36799999999999999999999998 999999875
No 396
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.16 E-value=0.1 Score=48.48 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++|.|+||+|.+|..++..++.+|. +|++.....
T Consensus 6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 46899999999999999999999998 777655543
No 397
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.15 E-value=0.16 Score=49.55 Aligned_cols=89 Identities=19% Similarity=0.167 Sum_probs=50.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeE-EEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev-~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
|+||+|||+ |.||..++..+...+.. ++ .+++.+.......+.... ... .++|+++.-.+.|+||++++.
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~~-~l~~v~~~~~~~~~~~~~~~~----~~~---~~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPDL-RVDWVIVPEHSIDAVRRALGE----AVR---VVSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCCc-eEEEEEEcCCCHHHHhhhhcc----CCe---eeCCHHHhccCCCEEEECCCH
Confidence 579999998 99999999888776432 33 333433221111111111 111 235676432569999999642
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
....+++..+-+...+.++
T Consensus 72 ----------------~~~~e~~~~aL~aGk~Vvi 90 (265)
T PRK13303 72 ----------------AALKEHVVPILKAGIDCAV 90 (265)
T ss_pred ----------------HHHHHHHHHHHHcCCCEEE
Confidence 2335666666665555443
No 398
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=95.15 E-value=0.11 Score=51.39 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-------------------hh--hhhhhcccCCCCceeeecCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-------------------KG--VAADLSHCNTPSQVLDFTGP 152 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-------------------~g--~~~dL~~~~~~~~v~~i~~t 152 (412)
.||.|+|+ |.+|..+|..|+..|+ ..|.|+|-+.. ++ .+..|.+......+..+...
T Consensus 20 s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~ 97 (286)
T cd01491 20 SNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP 97 (286)
T ss_pred CcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 58999998 9999999999999996 79999998751 00 01122222222334444433
Q ss_pred CcHHhhcCCCcEEEEc
Q 015172 153 EELASALKGVNVVVIP 168 (412)
Q Consensus 153 ~d~~~al~~aDiVIia 168 (412)
.+. +-+.+.|+||.+
T Consensus 98 ~~~-~~l~~fdvVV~~ 112 (286)
T cd01491 98 LTT-DELLKFQVVVLT 112 (286)
T ss_pred CCH-HHHhcCCEEEEe
Confidence 333 468999999988
No 399
>PRK08278 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.2 Score=48.30 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA 40 (273)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence 35799999999999999999999998 999999864
No 400
>PLN02306 hydroxypyruvate reductase
Probab=95.12 E-value=0.072 Score=54.93 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchhhhh---hhhccc---CCCCceeeecCCCcHHhhcCCCcE
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVKGVA---ADLSHC---NTPSQVLDFTGPEELASALKGVNV 164 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~g~~---~dL~~~---~~~~~v~~i~~t~d~~~al~~aDi 164 (412)
..++|+|||. |.+|..+|..+. ..|. +|..||........ ..+... ...... .+....++++.++.||+
T Consensus 164 ~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~L~ell~~sDi 239 (386)
T PLN02306 164 KGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPV-TWKRASSMEEVLREADV 239 (386)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccc-cccccCCHHHHHhhCCE
Confidence 4579999998 999999998875 5577 99999986411110 011000 000001 11113478889999999
Q ss_pred EEEcC
Q 015172 165 VVIPA 169 (412)
Q Consensus 165 VIiaa 169 (412)
|++..
T Consensus 240 V~lh~ 244 (386)
T PLN02306 240 ISLHP 244 (386)
T ss_pred EEEeC
Confidence 99974
No 401
>PRK05855 short chain dehydrogenase; Validated
Probab=95.12 E-value=0.11 Score=55.07 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=65.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCc--eeeecCCCcHH-------hhcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQ--VLDFTGPEELA-------SALK 160 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~--v~~i~~t~d~~-------~al~ 160 (412)
..+++.|+||+|.+|..++..|+..|. +|++.|.+. ......++........ ..+++...+.+ +.+.
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 346899999999999999999999998 899999986 2222222322111000 00111111111 1234
Q ss_pred CCcEEEEcCCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHhhCCCeEEEEEc
Q 015172 161 GVNVVVIPAGVPRKP---GMTRD---DLFNINA----NIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 161 ~aDiVIiaag~p~k~---g~~r~---dl~~~N~----~i~~~i~~~i~~~~p~aiviv~T 210 (412)
..|++|..||..... ..+.. ..+..|+ .+.+.+.+.+.+....+.|+++|
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~s 451 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVA 451 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 589999999975421 11222 2233453 34445555555544445555554
No 402
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.10 E-value=0.048 Score=55.89 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCcee-eecCCCcHHhhcCCCcEEEEcCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-DFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~-~i~~t~d~~~al~~aDiVIiaag 170 (412)
+..||.|||+ |.+|...+..+...|. +|..+|.+..+.. .+.... ...+. .+....++.+.++++|+||.+++
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence 3567999998 9999999999998897 8999999752211 111110 00011 11112346677899999999976
Q ss_pred CC
Q 015172 171 VP 172 (412)
Q Consensus 171 ~p 172 (412)
.|
T Consensus 240 ~~ 241 (370)
T TIGR00518 240 IP 241 (370)
T ss_pred cC
Confidence 54
No 403
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=0.22 Score=49.26 Aligned_cols=118 Identities=24% Similarity=0.336 Sum_probs=74.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCcee----eecCCCcHH-------hhc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVL----DFTGPEELA-------SAL 159 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~----~i~~t~d~~-------~al 159 (412)
.+.|.|.|||..+|..+|+.++..|. .++|..... ++..+.++........+. +++-.++.+ ..+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 35688889999999999999999998 888887764 233334444332111011 122122222 347
Q ss_pred CCCcEEEEcCCCCCCCC-Cc------hhhHHHh----hHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 160 KGVNVVVIPAGVPRKPG-MT------RDDLFNI----NANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 160 ~~aDiVIiaag~p~k~g-~~------r~dl~~~----N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
.+.|+.|..||..+ .+ .+ ..+.+.. .+-+.+...+.+.+.. ++.|++++....
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG 153 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG 153 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence 89999999999987 33 11 1122333 3567788888888776 687777665544
No 404
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=95.10 E-value=0.12 Score=50.95 Aligned_cols=111 Identities=13% Similarity=0.066 Sum_probs=65.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhh-----hhhhh-----cccCCC-CceeeecCC----------C
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG-----VAADL-----SHCNTP-SQVLDFTGP----------E 153 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g-----~~~dL-----~~~~~~-~~v~~i~~t----------~ 153 (412)
+|.|+||+|++|..++..|+..|....|++.+.+.... ....+ .+.... ..+..+.+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 57899999999999999999988433788888764211 00001 000000 112212111 1
Q ss_pred cHHhhcCCCcEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEE
Q 015172 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206 (412)
Q Consensus 154 d~~~al~~aDiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiv 206 (412)
++.+...++|+||.+++... ......++...|+.-...+.+.+.+.....++
T Consensus 81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v 132 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKPLH 132 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEE
Confidence 34445688999999987542 12233444567777778888877765544333
No 405
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.09 E-value=0.072 Score=52.48 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=48.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++|.|||| |.+|..+++.|+..|. .+|.+++++.. +..+.++... ..+..+....+..+.+.++|+||.+..
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSGGLAIEKAAEVLVSTVP 199 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---CcceeccchhhhhhcccCCCEEEECCC
Confidence 468999998 9999999999999985 58999998763 3233332211 111111111233345789999999854
Q ss_pred C
Q 015172 171 V 171 (412)
Q Consensus 171 ~ 171 (412)
.
T Consensus 200 ~ 200 (282)
T TIGR01809 200 A 200 (282)
T ss_pred C
Confidence 4
No 406
>PRK08226 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.14 Score=48.65 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..|+..|. +|+++|.+.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~ 40 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGA--NLILLDISP 40 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 6799999999999999999999998 899999875
No 407
>PLN02858 fructose-bisphosphate aldolase
Probab=95.09 E-value=0.072 Score=63.22 Aligned_cols=65 Identities=14% Similarity=0.112 Sum_probs=48.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..||++||- |.||.++|..|+..|+ +|..||++..+. .++.+... . ...++.++.++||+||.+.
T Consensus 4 ~~~IGfIGL-G~MG~~mA~~L~~~G~--~v~v~dr~~~~~--~~l~~~Ga----~---~~~s~~e~a~~advVi~~l 68 (1378)
T PLN02858 4 AGVVGFVGL-DSLSFELASSLLRSGF--KVQAFEISTPLM--EKFCELGG----H---RCDSPAEAAKDAAALVVVL 68 (1378)
T ss_pred CCeEEEEch-hHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHcCC----e---ecCCHHHHHhcCCEEEEEc
Confidence 468999998 9999999999999998 999999976322 22333221 1 1245677889999999984
No 408
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.061 Score=53.23 Aligned_cols=56 Identities=25% Similarity=0.425 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||+++.||..+|..|...+. .|..++.. |.++++.+++||+||.++|.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg~ 211 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVGK 211 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCCC
Confidence 347999999944499999999998886 77777632 23566679999999999987
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 212 p 212 (286)
T PRK14175 212 P 212 (286)
T ss_pred C
Confidence 7
No 409
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.08 E-value=0.15 Score=53.66 Aligned_cols=125 Identities=17% Similarity=0.109 Sum_probs=68.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||.|||+ |.+|..+|..|...|. +|+++|..+. ......|.... +..+.+.. .. ...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~~-~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-PT-LPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-cc-ccCCCCEEEECC
Confidence 468999998 9999999999999998 8999997641 11112232222 22222221 11 356799999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHH--HHHHhhCCCeEEEEEcCCC--CCcHHHHHHHHHHh
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLV--EAVADNCPDAFIHIISNPV--NSTVPIAAEVLKQK 227 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~--~~i~~~~p~aiviv~TNPv--~~~~pI~t~i~~~~ 227 (412)
|++..... ....-..+++++.++- ..+.+...+..+|-+|-+. ++++-+++.+++..
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~ 147 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAA 147 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHc
Confidence 88642211 0011123444443321 1221111133344454444 34455667777665
No 410
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=95.06 E-value=0.064 Score=53.67 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+++|||+ |..+...+..++. .+ +.+|++||++. ....+.++.+ . ...+. ...|.++++++||+||.+.
T Consensus 128 ~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~---~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVV---AVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEE---EESSHHHHHTTSSEEEE--
T ss_pred CceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccce---eccchhhhcccCCEEEEcc
Confidence 468999998 9998888776654 56 68999999987 4555666666 2 22222 2367888999999999863
No 411
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.06 E-value=0.11 Score=52.33 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
-+.++|+|||- |.||..+|..|...|+ +|+.+|... . ..+..... . ... .+++++++.||+|++..
T Consensus 14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~-~--s~~~A~~~-G--~~v----~sl~Eaak~ADVV~llL 79 (335)
T PRK13403 14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG-K--SFEVAKAD-G--FEV----MSVSEAVRTAQVVQMLL 79 (335)
T ss_pred hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc-h--hhHHHHHc-C--CEE----CCHHHHHhcCCEEEEeC
Confidence 34578999998 9999999999999999 999998542 1 11111110 1 111 25678999999999984
No 412
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.04 E-value=0.29 Score=47.70 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=42.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
++||+|.||+|.||+.+...+.+.+-..=+.-+|...-.-.-.|..+......+. +..+.|+.....++|++|=.
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~g-v~v~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLG-VPVTDDLLLVKADADVLIDF 76 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccC-ceeecchhhcccCCCEEEEC
Confidence 6899999999999999998888776322334455543110111111111001111 11133444567899998874
No 413
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.03 E-value=0.43 Score=45.43 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.+.|+||+|.+|..++..++..|. .|++.|++.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~ 42 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDE 42 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 5788999999999999999999998 899999976
No 414
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.03 E-value=0.065 Score=53.94 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH-hCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIK-MSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~-~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.+|..+|..+. .-|. +|+.+|.........++ . .. + .++++.++.||+|++..
T Consensus 144 ~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-----~--~~-~---~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 144 HHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-----N--AR-Y---CDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-----C--cE-e---cCHHHHHHhCCEEEEeC
Confidence 4579999998 999999998876 5576 88888875311111000 0 11 1 35778899999999984
No 415
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.02 E-value=0.038 Score=56.85 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.++|+|||. |.||..+|..+...|. +|+.+|..... . . .. . . ..++++.+++||+|++..
T Consensus 116 gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~--~----~---~~-~-~---~~~l~ell~~aDiV~lh~ 175 (381)
T PRK00257 116 ERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE--A----E---GD-G-D---FVSLERILEECDVISLHT 175 (381)
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc--c----c---cC-c-c---ccCHHHHHhhCCEEEEeC
Confidence 478999998 9999999999998898 99999974311 0 0 00 1 1 135777889999999984
No 416
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.02 E-value=0.15 Score=48.52 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+||+|.+|..++..++..|. .|++.+.+.
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 36899999999999999999999998 899998874
No 417
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.01 E-value=0.079 Score=53.28 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=50.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh-CCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM-SPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~-~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+++|||+ |.+|...+..++. .+ +.+|.+++.+. +...+.++.+. ....+ ....++++++++||+||.+.
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~-i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v---~~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRD-IRSARIWARDSAKAEALALQLSSL-LGIDV---TAATDPRAAMSGADIIVTTT 202 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCC-ccEEEEECCCHHHHHHHHHHHHhh-cCceE---EEeCCHHHHhccCCEEEEec
Confidence 468999998 9999999887764 55 46899999986 34444444321 11112 12367788899999999984
Q ss_pred C
Q 015172 170 G 170 (412)
Q Consensus 170 g 170 (412)
.
T Consensus 203 ~ 203 (326)
T TIGR02992 203 P 203 (326)
T ss_pred C
Confidence 3
No 418
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.00 E-value=0.14 Score=48.72 Aligned_cols=35 Identities=26% Similarity=0.218 Sum_probs=30.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
..+++.|+||+|++|..++..++..|. .|++.+..
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~ 42 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR 42 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence 346899999999999999999999997 88887764
No 419
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.21 Score=47.11 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..++|.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 347899999999999999999999998 899999876
No 420
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.97 E-value=0.14 Score=52.06 Aligned_cols=71 Identities=21% Similarity=0.490 Sum_probs=45.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC-CC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS-PL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~-gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||+||||+|++|.-+...|... .+ +.+|.++......|....+... . +. +.. .|.. .++++|+|+.+++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~--~--l~-v~~-~~~~-~~~~~Divf~a~~ 77 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR--E--II-IQE-AKIN-SFEGVDIAFFSAG 77 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc--c--eE-EEe-CCHH-HhcCCCEEEECCC
Confidence 479999999999999999988854 44 1357777665422222222221 1 21 111 2333 5799999999865
No 421
>PRK06953 short chain dehydrogenase; Provisional
Probab=94.95 E-value=0.25 Score=45.92 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=57.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHh---hcC--CCcEEEE
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELAS---ALK--GVNVVVI 167 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~---al~--~aDiVIi 167 (412)
|+++.|+||+|.+|..++..|+..|. +|+++|.+.... .++..........+++...+.++ .+. ..|+||.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGAEALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 35788999999999999999998897 899999875211 11111111100111211122221 122 4899999
Q ss_pred cCCCCC---CC--CCch---hhHHHhhHHHHHHHHHHHHh
Q 015172 168 PAGVPR---KP--GMTR---DDLFNINANIVKTLVEAVAD 199 (412)
Q Consensus 168 aag~p~---k~--g~~r---~dl~~~N~~i~~~i~~~i~~ 199 (412)
++|... .+ ..+. ...+..|+.-...+.+.+.+
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 116 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLP 116 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 998752 11 1122 22345565554555555544
No 422
>PRK07577 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.19 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.173 Sum_probs=31.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. +|++++.+.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 5799999999999999999999998 999999875
No 423
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.93 E-value=0.29 Score=47.00 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. .|+++|.+.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35789999999999999999999998 899999875
No 424
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.93 E-value=0.15 Score=47.82 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+|++|.+|..++..++..|. .|++.|.+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999997 899999876
No 425
>PRK08264 short chain dehydrogenase; Validated
Probab=94.92 E-value=0.17 Score=47.24 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=46.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh---cCCCcEEEEcCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA---LKGVNVVVIPAG 170 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a---l~~aDiVIiaag 170 (412)
++|.|+||+|.+|..++..|+.+|. .+|++.+.+..+... ..........++.-..++++. +...|+||.++|
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 82 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAG 82 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 5799999999999999999999884 478999987522111 111100000122112222222 345899999998
Q ss_pred CC
Q 015172 171 VP 172 (412)
Q Consensus 171 ~p 172 (412)
.+
T Consensus 83 ~~ 84 (238)
T PRK08264 83 IF 84 (238)
T ss_pred cC
Confidence 73
No 426
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=94.91 E-value=0.23 Score=46.70 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV 127 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di 127 (412)
+++.|+||+|.+|..++..++..|. +|++.+.
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~ 38 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYN 38 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcC
Confidence 5799999999999999999999997 7777554
No 427
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.91 E-value=0.058 Score=53.97 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||- |.+|..+|..+..-|. +|.-||..... . +. ... ..++++.++.||+|++..
T Consensus 144 ~gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~---~---~~----~~~----~~~l~ell~~sDvv~lh~ 204 (311)
T PRK08410 144 KGKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN---K---NE----EYE----RVSLEELLKTSDIISIHA 204 (311)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc---c---cc----Cce----eecHHHHhhcCCEEEEeC
Confidence 3579999998 9999999988877777 99999974210 0 00 011 135788899999999984
No 428
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.17 Score=48.06 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.+.|+|++|.+|..++..++..|. +|++.|.+.
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 5788999999999999999999998 999999864
No 429
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.071 Score=52.70 Aligned_cols=56 Identities=20% Similarity=0.405 Sum_probs=43.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||++|.+|.++++.|+..|. .|.+++.. +.++.+.+++||+||.+.|.
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~ 212 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK 212 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence 346899999933499999999999886 88888641 23455567999999999875
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 213 ~ 213 (283)
T PRK14192 213 P 213 (283)
T ss_pred C
Confidence 4
No 430
>PRK07035 short chain dehydrogenase; Provisional
Probab=94.89 E-value=0.15 Score=48.23 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. .|++.|.+.
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 5799999999999999999999997 999999875
No 431
>PRK07578 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.2 Score=45.75 Aligned_cols=104 Identities=21% Similarity=0.198 Sum_probs=58.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|++.|+||+|.+|..++..++.. . +|++.+.+.. .+..|+.+.. .+.. .-+.+...|+||..+|...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~---~~~~------~~~~~~~id~lv~~ag~~~ 67 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPA---SIRA------LFEKVGKVDAVVSAAGKVH 67 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChH---HHHH------HHHhcCCCCEEEECCCCCC
Confidence 57999999999999999999888 4 8999887642 1111222211 0110 0112357899999998643
Q ss_pred C-C--CCchhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 174 K-P--GMTRDD---LFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 174 k-~--g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
. + +.+..+ .+..|+.....+.+.+.++. +.+.+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 1 1 122222 23344444444455444433 445555544
No 432
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.88 E-value=0.055 Score=56.29 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=62.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
..+|+|+|+ |.||..++..|...|. .+|+++|.+.. ...+..+.. . .+ ...++.+.+.++|+||.+.+
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~----~---~i-~~~~l~~~l~~aDvVi~aT~ 249 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG----E---AV-KFEDLEEYLAEADIVISSTG 249 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC----e---Ee-eHHHHHHHHhhCCEEEECCC
Confidence 468999998 9999999999988883 48999999762 222222211 1 11 11356678899999999976
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhC-CCeEEEEEcCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNC-PDAFIHIISNPVN 214 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~-p~aiviv~TNPv~ 214 (412)
.|.. .-+.+ ..+.....- ...+++=.++|-|
T Consensus 250 s~~~---------ii~~e----~l~~~~~~~~~~~~viDla~Prd 281 (417)
T TIGR01035 250 APHP---------IVSKE----DVERALRERTRPLFIIDIAVPRD 281 (417)
T ss_pred CCCc---------eEcHH----HHHHHHhcCCCCeEEEEeCCCCC
Confidence 5531 11112 222221111 2457777899988
No 433
>PRK12747 short chain dehydrogenase; Provisional
Probab=94.86 E-value=0.34 Score=45.82 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV 127 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di 127 (412)
+.+.|+||+|.+|..++..|+..|. .|++.+.
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 5789999999999999999999998 8888754
No 434
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.83 E-value=0.62 Score=43.72 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
++|.|+||+|.+|..++..++..|. +|++.+.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 5799999999999999999999997 88876553
No 435
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=94.82 E-value=0.25 Score=41.96 Aligned_cols=71 Identities=25% Similarity=0.375 Sum_probs=38.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEE-ecCchhhhhhhhcccCCCCc-eeeecCCCcHHhhcCCCcEEEEcC
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLY-DVMNVKGVAADLSHCNTPSQ-VLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~-Di~~~~g~~~dL~~~~~~~~-v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
||+|+|++|.+|..++..+...+-+ +++-+ +.+...+......+...... ...+. ..+++ ..++|+||++.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcC
Confidence 6899997699999998888886322 45444 65432221111112111111 11111 13343 35999999984
No 436
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.82 E-value=0.98 Score=44.10 Aligned_cols=76 Identities=18% Similarity=0.195 Sum_probs=42.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
++||+|+|++|.||..++..+...+-+.=+.++|.........++......... .+..++|+++...++|+||.+.
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~-gv~~~~d~~~l~~~~DvVIdfT 76 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKV-GVPVTDDLEAVETDPDVLIDFT 76 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcC-CceeeCCHHHhcCCCCEEEECC
Confidence 479999995599999999988876433345567743211001122111000000 1122467765435689999984
No 437
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.82 E-value=0.27 Score=48.69 Aligned_cols=35 Identities=23% Similarity=0.200 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||++.+|..++..|+..|. .|++.+.+.
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~ 48 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNR 48 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 46788999999999999999999997 999999876
No 438
>PRK12743 oxidoreductase; Provisional
Probab=94.82 E-value=0.66 Score=44.06 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
++|.|+||+|.+|..++..++..|. +|++.+..
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHS 35 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence 5789999999999999999999998 88887653
No 439
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=94.81 E-value=0.16 Score=47.61 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||.|||+ |.||...+..|...|. +|++++.+... ...++.+.. .+......-+. +.+.++|+||.+.+
T Consensus 10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~~-~~l~~adlViaaT~ 79 (202)
T PRK06718 10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFEP-SDIVDAFLVIAATN 79 (202)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCCh-hhcCCceEEEEcCC
Confidence 469999999 9999999999999986 89999764321 112232221 11111111223 36899999998843
No 440
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=94.81 E-value=0.094 Score=52.26 Aligned_cols=72 Identities=10% Similarity=0.070 Sum_probs=50.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+++|||+ |..|...+..++.-.-+.+|++||++. ....+.++.+. ....+. ...+.++++++||||+.+.
T Consensus 117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~---~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIR---PVDNAEAALRDADTITSIT 190 (301)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEE---EeCCHHHHHhcCCEEEEec
Confidence 478999998 999998877666543468999999987 34445555542 111122 2356788999999999874
No 441
>PLN02494 adenosylhomocysteinase
Probab=94.81 E-value=0.15 Score=53.71 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=59.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh-hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK-GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~-g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
.++|+|+|. |.+|..+|..+...|. .|+.+|+++.+ ..+.+ +. .. + .+++++++.+|+||.+.|.
T Consensus 254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G-~~--v------v~leEal~~ADVVI~tTGt 319 (477)
T PLN02494 254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EG-YQ--V------LTLEDVVSEADIFVTTTGN 319 (477)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cC-Ce--e------ccHHHHHhhCCEEEECCCC
Confidence 578999998 9999999999988887 89999998632 12211 11 10 1 1345678999999998553
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCC
Q 015172 172 PRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212 (412)
Q Consensus 172 p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNP 212 (412)
. .++. .+.+...-+++++++++-+
T Consensus 320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 320 K---------------DIIM--VDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred c---------------cchH--HHHHhcCCCCCEEEEcCCC
Confidence 2 1111 1223333378999999875
No 442
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.81 E-value=0.068 Score=55.64 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVP 172 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p 172 (412)
.+||.|||+ |.||..++..|+..|. .+|.++..+..++ ..|.+....... ....++.+.+.++|+||.+.+.|
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~ra--~~La~~~~~~~~---~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIEKA--QKITSAFRNASA---HYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHH--HHHHHHhcCCeE---ecHHHHHHHhccCCEEEECcCCC
Confidence 468999998 9999999999998885 4899999875322 222221100111 11245556799999999998776
Q ss_pred C
Q 015172 173 R 173 (412)
Q Consensus 173 ~ 173 (412)
.
T Consensus 254 ~ 254 (414)
T PRK13940 254 E 254 (414)
T ss_pred C
Confidence 3
No 443
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.79 E-value=0.086 Score=53.13 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++++|||. |.+|..+|..+..-|. +|+-+|.... .+..+... . .+ .++++.++.||+|++.+
T Consensus 145 ~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~-~y---~~l~ell~~sDii~l~~ 208 (324)
T COG1052 145 RGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------A-RY---VDLDELLAESDIISLHC 208 (324)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------c-ee---ccHHHHHHhCCEEEEeC
Confidence 3689999998 9999999998885566 9999998753 11111111 1 12 12667899999999985
No 444
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.78 E-value=0.13 Score=42.88 Aligned_cols=96 Identities=25% Similarity=0.283 Sum_probs=55.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcH-HhhcCCCcEEEEcCCCCCC
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEEL-ASALKGVNVVVIPAGVPRK 174 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~-~~al~~aDiVIiaag~p~k 174 (412)
|.|+|. |.+|..++..|...+. +++++|.++.. ...+..........+.+-...+ +..+.+||.||++.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~--~vvvid~d~~~--~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGI--DVVVIDRDPER--VEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTS--EEEEEESSHHH--HHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred eEEEcC-CHHHHHHHHHHHhCCC--EEEEEECCcHH--HHHHHhcccccccccchhhhHHhhcCccccCEEEEccC----
Confidence 578998 9999999999999776 99999998721 1111211111000010000001 125689999999832
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcC
Q 015172 175 PGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211 (412)
Q Consensus 175 ~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TN 211 (412)
.| ..| ..++..+++..|+..+++..+
T Consensus 72 -----~d--~~n----~~~~~~~r~~~~~~~ii~~~~ 97 (116)
T PF02254_consen 72 -----DD--EEN----LLIALLARELNPDIRIIARVN 97 (116)
T ss_dssp -----SH--HHH----HHHHHHHHHHTTTSEEEEEES
T ss_pred -----CH--HHH----HHHHHHHHHHCCCCeEEEEEC
Confidence 11 334 345556677778776655554
No 445
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.76 E-value=0.17 Score=53.02 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=71.8
Q ss_pred CCceEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 92 ASFKVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
+.+||.|+|. |..|.+ +|..|...|. +|...|.+... ...+|.... +..+.+. +. +.+.++|+||...|
T Consensus 6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~~-~~~~~~d~vv~spg 75 (461)
T PRK00421 6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-DA-ENIKDADVVVYSSA 75 (461)
T ss_pred CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-CH-HHCCCCCEEEECCC
Confidence 3468999999 999999 7999999999 99999987532 122343321 2222222 33 36889999999988
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhCCCCC
Q 015172 171 VPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKGVYDP 232 (412)
Q Consensus 171 ~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~sg~~~ 232 (412)
+|...-. .......+++++.++-- +.+.+++..+|-+ ||==++++-++.++++..+ +++
T Consensus 76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g-~~~ 136 (461)
T PRK00421 76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG-LDP 136 (461)
T ss_pred CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC-CCC
Confidence 8753211 11111234444332111 1122212123334 4443344556677777653 443
No 446
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.73 E-value=0.078 Score=52.74 Aligned_cols=56 Identities=18% Similarity=0.425 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+|.||.++|..|+..|. +|.+++... .++++.++.||+||.+.|.
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~--tVtv~~~rT-----------------------~~l~e~~~~ADIVIsavg~ 211 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANA--TVTIAHSRT-----------------------RDLPAVCRRADILVAAVGR 211 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence 457999999779999999999999998 888885321 1345678999999999876
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 212 ~ 212 (296)
T PRK14188 212 P 212 (296)
T ss_pred h
Confidence 5
No 447
>PRK06823 ornithine cyclodeaminase; Validated
Probab=94.72 E-value=0.11 Score=52.23 Aligned_cols=72 Identities=11% Similarity=0.096 Sum_probs=50.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
....++|||+ |..+...+..+..-.-+.+|++||++. ....+..+.+.. ..+. ...+.++++++||||+.+.
T Consensus 127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v~---~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAVN---TTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcEE---EECCHHHHhcCCCEEEEec
Confidence 3578999998 999988887666553458999999987 333333333321 1121 2356788999999999874
No 448
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.71 E-value=0.13 Score=49.00 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=29.8
Q ss_pred ceEEEEcCC--CCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAA--GGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAa--G~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+.+.|+||+ +.+|..+|..|+..|. .|++.+.+.
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 568889996 5899999999999998 899998864
No 449
>PRK07023 short chain dehydrogenase; Provisional
Probab=94.70 E-value=0.097 Score=49.26 Aligned_cols=35 Identities=20% Similarity=0.230 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+|+|.|+||+|.+|..++..++..|. +|++.+.+.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 57899999999999999999999998 899999865
No 450
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.13 Score=53.66 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=70.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhh---hhhhcccCCCCceeeecCCC-cH---HhhcCCCcEEEE
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV---AADLSHCNTPSQVLDFTGPE-EL---ASALKGVNVVVI 167 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~---~~dL~~~~~~~~v~~i~~t~-d~---~~al~~aDiVIi 167 (412)
||.|+|+ |..|.+.|..|+..|. +|.+.|.+..... ...|.... +..+.+.. +. .+.+.+.|+||.
T Consensus 2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~ 74 (459)
T PRK02705 2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV 74 (459)
T ss_pred eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence 7999998 9999999999999998 9999998752111 11233221 22222221 11 124788999999
Q ss_pred cCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhC
Q 015172 168 PAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKG 228 (412)
Q Consensus 168 aag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~s 228 (412)
+.|.|...-. .......+++++.++....+... +..+|-+ ||==++++-+++.++...+
T Consensus 75 s~gi~~~~~~-~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g 135 (459)
T PRK02705 75 SPGIPWDHPT-LVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG 135 (459)
T ss_pred CCCCCCCCHH-HHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence 9888742111 11112345555555543322222 2223334 4543445567778877663
No 451
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.69 E-value=0.07 Score=53.52 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=44.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||. |.+|..+|..+..-|. +|.-||.... +.. .. ..++++.++.||+|++..
T Consensus 147 ~gktvgIiG~-G~IG~~vA~~l~~fgm--~V~~~~~~~~--------~~~----~~----~~~l~ell~~sDiv~l~l 205 (317)
T PRK06487 147 EGKTLGLLGH-GELGGAVARLAEAFGM--RVLIGQLPGR--------PAR----PD----RLPLDELLPQVDALTLHC 205 (317)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCC--------ccc----cc----ccCHHHHHHhCCEEEECC
Confidence 3479999998 9999999998887787 9999987421 000 11 125778899999999984
No 452
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.68 E-value=0.21 Score=47.60 Aligned_cols=35 Identities=14% Similarity=0.190 Sum_probs=31.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999999998 899999875
No 453
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.64 E-value=0.22 Score=48.81 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=57.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC--CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhh-cCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL--VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASA-LKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl--~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~a-l~~aDiVIiaa 169 (412)
.+||+|||. |.||..++..+...+. +.-+.++|.+.. ....+... .. ..+|+++- ..+.|+||++|
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~--~~~~~~~~-----~~---~~~~l~~ll~~~~DlVVE~A 70 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAAD--LPPALAGR-----VA---LLDGLPGLLAWRPDLVVEAA 70 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHH--HHHHhhcc-----Cc---ccCCHHHHhhcCCCEEEECC
Confidence 379999998 9999999988765432 122334555431 12222221 11 12456642 38899999998
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEE
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv 208 (412)
+ ...++++++.+-+..-|-+++-
T Consensus 71 ~----------------~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 71 G----------------QQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred C----------------HHHHHHHHHHHHhcCCCEEEEC
Confidence 6 5778888888887777776633
No 454
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=94.64 E-value=0.36 Score=45.90 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. .|++.+.+.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~ 41 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSD 41 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 46899999999999999999999997 788876643
No 455
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.63 E-value=0.23 Score=48.12 Aligned_cols=69 Identities=12% Similarity=0.218 Sum_probs=45.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc------CC-CcEEEE
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL------KG-VNVVVI 167 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al------~~-aDiVIi 167 (412)
||.|+||+|++|..++..|...|. +|+....+...... ........++.-..++.+++ ++ +|.|+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~-----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAG-----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccC-----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 589999999999999999999998 89999887521110 01000011222223444555 67 999998
Q ss_pred cCC
Q 015172 168 PAG 170 (412)
Q Consensus 168 aag 170 (412)
..+
T Consensus 74 ~~~ 76 (285)
T TIGR03649 74 VAP 76 (285)
T ss_pred eCC
Confidence 754
No 456
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=94.62 E-value=0.12 Score=49.38 Aligned_cols=34 Identities=18% Similarity=0.206 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 10 k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 10 KIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 5788999999999999999999998 999999875
No 457
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.79 Score=42.88 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|.+|..++..++..|. .|+++|.+.
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 5899999999999999999999998 899999986
No 458
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.78 Score=43.65 Aligned_cols=35 Identities=29% Similarity=0.249 Sum_probs=30.8
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAG-GIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG-~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+| .+|..++..++..|. .|++.|.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 46899999876 699999999999998 899999875
No 459
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=94.60 E-value=0.23 Score=46.37 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+|++|.+|..++..++..|. .|++.|.+.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 4789999999999999999999997 899999874
No 460
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=94.59 E-value=0.13 Score=49.99 Aligned_cols=86 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcC--CCcEEEEcCCCCCC-
Q 015172 98 VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK--GVNVVVIPAGVPRK- 174 (412)
Q Consensus 98 VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~--~aDiVIiaag~p~k- 174 (412)
|+||+|++|+.++..|...|. ++++..... ..|+.+ ..++++.++ +.|+||.+|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeeccc
Confidence 789999999999999998886 555543211 112211 122333333 57999999876321
Q ss_pred --CCCchhhHHHhhHHHHHHHHHHHHhhC
Q 015172 175 --PGMTRDDLFNINANIVKTLVEAVADNC 201 (412)
Q Consensus 175 --~g~~r~dl~~~N~~i~~~i~~~i~~~~ 201 (412)
......+.+..|......+++.+++..
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~ 92 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHG 92 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcC
Confidence 122345567789999999999998865
No 461
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=94.58 E-value=0.23 Score=46.21 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=30.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.++|.|+|++|.+|..++..++..|. +|++...+.
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~ 39 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASS 39 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 36899999999999999999999997 887776654
No 462
>PRK07985 oxidoreductase; Provisional
Probab=94.57 E-value=0.46 Score=46.55 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch---hhhhhhhc-ccCCCC--ceeeecCCCc-------HHhhcC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV---KGVAADLS-HCNTPS--QVLDFTGPEE-------LASALK 160 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~---~g~~~dL~-~~~~~~--~v~~i~~t~d-------~~~al~ 160 (412)
+++.|+||+|.+|..++..|+..|. +|++.+.+.. .....++. +..... ...+++-..+ ..+.+.
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 127 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG 127 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999998 8999876431 11111111 111000 0011111111 112345
Q ss_pred CCcEEEEcCCCCC--CC--CCchhh---HHHhhHHHHHHHHHHHHhhC-CCeEEEEEc
Q 015172 161 GVNVVVIPAGVPR--KP--GMTRDD---LFNINANIVKTLVEAVADNC-PDAFIHIIS 210 (412)
Q Consensus 161 ~aDiVIiaag~p~--k~--g~~r~d---l~~~N~~i~~~i~~~i~~~~-p~aiviv~T 210 (412)
..|++|..+|... .+ ..+..+ .+..|+.-.-.+.+.+.++. .++.||++|
T Consensus 128 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 128 GLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred CCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 7899999988632 11 222222 34556554444555554433 345565554
No 463
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.1 Score=51.68 Aligned_cols=57 Identities=26% Similarity=0.454 Sum_probs=45.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+..||.+++.+|..++- .|.+... .|.|+++.+++||+||.++|.
T Consensus 154 ~Gk~vvViGrS~iVGkPla~lL~~~~a--TVtichs-----------------------~T~~l~~~~~~ADIvIsAvGk 208 (287)
T PRK14173 154 AGKEVVVVGRSNIVGKPLAALLLREDA--TVTLAHS-----------------------KTQDLPAVTRRADVLVVAVGR 208 (287)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEecCC
Confidence 457999999999999999999988875 6665531 134667778999999999997
Q ss_pred CC
Q 015172 172 PR 173 (412)
Q Consensus 172 p~ 173 (412)
|.
T Consensus 209 p~ 210 (287)
T PRK14173 209 PH 210 (287)
T ss_pred cC
Confidence 73
No 464
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.56 E-value=0.27 Score=51.15 Aligned_cols=117 Identities=26% Similarity=0.299 Sum_probs=64.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhccc-CCCCceeeecCCCcHH-------hhcCCCc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHC-NTPSQVLDFTGPEELA-------SALKGVN 163 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~-~~~~~v~~i~~t~d~~-------~al~~aD 163 (412)
+.+++.|+||+|.+|..++..++..|. +|++.|.........++.+. ......-+++...+.+ +.+...|
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 346899999999999999999999998 89999985311111111110 1000001221111111 1133689
Q ss_pred EEEEcCCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHhh--C-CCeEEEEEc
Q 015172 164 VVVIPAGVPRKP---GMTR---DDLFNINANIVKTLVEAVADN--C-PDAFIHIIS 210 (412)
Q Consensus 164 iVIiaag~p~k~---g~~r---~dl~~~N~~i~~~i~~~i~~~--~-p~aiviv~T 210 (412)
+||.++|..... .++. ...+..|+.-...+.+.+.+. . +++.|+++|
T Consensus 287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~S 342 (450)
T PRK08261 287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVS 342 (450)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEEC
Confidence 999999875421 1222 223445665555555555442 1 446666655
No 465
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.56 E-value=0.37 Score=45.39 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=30.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
++|.|+||+|++|..++..|+..|. +|+++|...
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4688889999999999999999998 999999754
No 466
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=94.55 E-value=0.22 Score=51.98 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=72.4
Q ss_pred eEEEEcCCCCcHHH-HHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 95 KVAVLGAAGGIGQP-LALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 95 KV~VIGAaG~vG~~-iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
||.+||. |..|.+ +|..|...|. +|...|.+... ...+|.... +..+.+ .+. +.++++|+||...|+|.
T Consensus 1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~~-~~~~~~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HSA-ENLDDADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CCH-HHCCCCCEEEECCCCCC
Confidence 5889998 999998 9999999999 99999986532 222333221 222333 343 36889999999988875
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEE--cCCCCCcHHHHHHHHHHhCCCCCCCeEe
Q 015172 174 KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII--SNPVNSTVPIAAEVLKQKGVYDPKKLFG 237 (412)
Q Consensus 174 k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~--TNPv~~~~pI~t~i~~~~sg~~~~kviG 237 (412)
..-. .......+++++.+.-- +.+...+..+|-+ ||==++++-+++.+++.. |+++.-++|
T Consensus 71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~-g~~~~~~~g 133 (448)
T TIGR01082 71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA-GLDPTVVVG 133 (448)
T ss_pred CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc-CCCCeEEEC
Confidence 2211 11111234444332211 1122211123334 444344456667777665 354544443
No 467
>PRK06483 dihydromonapterin reductase; Provisional
Probab=94.55 E-value=0.36 Score=45.14 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 5788999999999999999999998 999999875
No 468
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.53 E-value=0.041 Score=54.07 Aligned_cols=98 Identities=24% Similarity=0.272 Sum_probs=56.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCC
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPR 173 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~ 173 (412)
|||.|+|++|++|+.+...+...|+ +++.++... .|+.+.. .+.. -++ . .+.|+||.+|+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~~-----~~~-~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVAK-----LLE-A-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHHH-----HHH-H-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHHH-----HHH-H-hCCCeEeccceeec
Confidence 8999999999999999999998887 888886542 1222210 0110 011 1 35899999987642
Q ss_pred CC--CCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEc
Q 015172 174 KP--GMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210 (412)
Q Consensus 174 k~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~T 210 (412)
.. ..+.......|....+.+++.+.+. ++.+|.+|
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~S 100 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHIS 100 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEee
Confidence 11 1233444567778888888887764 44444443
No 469
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.52 E-value=0.11 Score=51.36 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.++.||..++.+|...+. .|.+.+. .|.|+.+.+++||+||.++|.
T Consensus 157 ~Gk~vvViGrs~iVGkPla~lL~~~~a--tVt~~hs-----------------------~t~~l~~~~~~ADIVV~avG~ 211 (285)
T PRK14189 157 RGAHAVVIGRSNIVGKPMAMLLLQAGA--TVTICHS-----------------------KTRDLAAHTRQADIVVAAVGK 211 (285)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEecC-----------------------CCCCHHHHhhhCCEEEEcCCC
Confidence 457999999977779999999998886 6766421 134666789999999999986
Q ss_pred C
Q 015172 172 P 172 (412)
Q Consensus 172 p 172 (412)
|
T Consensus 212 ~ 212 (285)
T PRK14189 212 R 212 (285)
T ss_pred c
Confidence 5
No 470
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.51 E-value=0.088 Score=52.74 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=44.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..++|+|||- |.+|..+|..+...|. +|..+|..... ... . +..++++.++.||+|++..
T Consensus 146 ~gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~-------~~~----~----~~~~l~ell~~sDiv~l~~ 205 (314)
T PRK06932 146 RGSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS-------VCR----E----GYTPFEEVLKQADIVTLHC 205 (314)
T ss_pred CCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc-------ccc----c----ccCCHHHHHHhCCEEEEcC
Confidence 3579999998 9999999988877787 89888853210 000 0 1235778899999999984
No 471
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.51 E-value=0.13 Score=45.65 Aligned_cols=57 Identities=28% Similarity=0.373 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
-..++|.|+|.+..+|..++..|..+|. .|.+.|.+ |.|+++.+++||+||.+.|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence 3457999999999999999999998887 77777643 1245668999999999988
Q ss_pred CC
Q 015172 171 VP 172 (412)
Q Consensus 171 ~p 172 (412)
.+
T Consensus 81 ~~ 82 (140)
T cd05212 81 KP 82 (140)
T ss_pred CC
Confidence 76
No 472
>PRK14851 hypothetical protein; Provisional
Probab=94.49 E-value=0.15 Score=56.36 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.||+|+|+ |.+|+.++..|+..|+ ++++|+|-|.
T Consensus 44 ~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ 77 (679)
T PRK14851 44 AKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ 77 (679)
T ss_pred CeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence 68999998 9999999999999997 7999999874
No 473
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=94.44 E-value=0.23 Score=47.70 Aligned_cols=33 Identities=33% Similarity=0.553 Sum_probs=30.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||.|+|+ |.+|..++..|+..|+ ++++++|.|.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gv-g~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGF-GQIHVIDMDT 33 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899998 9999999999999995 7999999985
No 474
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=94.44 E-value=0.14 Score=47.57 Aligned_cols=113 Identities=24% Similarity=0.292 Sum_probs=62.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCC--ceeeecCCCcHHhhc-------CCCc
Q 015172 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPS--QVLDFTGPEELASAL-------KGVN 163 (412)
Q Consensus 96 V~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~--~v~~i~~t~d~~~al-------~~aD 163 (412)
|.|+|++|.+|..++..++.+|. +|++.+.+. ......++.+..... ...+++...++++.+ ...|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 45889999999999999999998 899998764 122222332221110 001222112222222 3569
Q ss_pred EEEEcCCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHhhC---CCeEEEEEc
Q 015172 164 VVVIPAGVPRKP---GMT---RDDLFNINANIVKTLVEAVADNC---PDAFIHIIS 210 (412)
Q Consensus 164 iVIiaag~p~k~---g~~---r~dl~~~N~~i~~~i~~~i~~~~---p~aiviv~T 210 (412)
+||..+|..... +.+ ..+.+..|......+.+.+.++. ....++++|
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~s 134 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINIS 134 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 999998864311 111 23345566665566666555442 233454444
No 475
>PRK14852 hypothetical protein; Provisional
Probab=94.42 E-value=0.15 Score=57.93 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
..||+|+|+ |.+|+.++..|+..|+ ++++|+|-|.
T Consensus 332 ~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~ 366 (989)
T PRK14852 332 RSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDA 366 (989)
T ss_pred cCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence 368999998 9999999999999997 8999999875
No 476
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.41 E-value=0.15 Score=50.32 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=47.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch--hhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~--~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.++|.|+|| |..+.++++.|+..|. .+|.++|++.. +..+.++.+......+... ...++.+.+.++|+||.+..
T Consensus 127 ~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 127 LDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcCC
Confidence 468999998 9999999999999885 58999999763 3333333211111111111 11122334678999999853
No 477
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=94.38 E-value=0.34 Score=53.24 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=59.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhc--CCCcEEEEc
Q 015172 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASAL--KGVNVVVIP 168 (412)
Q Consensus 91 ~~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al--~~aDiVIia 168 (412)
.+.|||.|+||+|++|++++..|...|. +|... . .|+.+. ..+...+ .+.|+||.+
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~------------~~v~~~i~~~~pd~Vih~ 435 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDR------------SSLLADIRNVKPTHVFNA 435 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccH------------HHHHHHHHhhCCCEEEEC
Confidence 4468999999999999999999988887 65311 0 011110 0011112 368999999
Q ss_pred CCCCCCC--C---CchhhHHHhhHHHHHHHHHHHHhhCC
Q 015172 169 AGVPRKP--G---MTRDDLFNINANIVKTLVEAVADNCP 202 (412)
Q Consensus 169 ag~p~k~--g---~~r~dl~~~N~~i~~~i~~~i~~~~p 202 (412)
|+.-..+ + .+..+.+..|+.....+++.+.+...
T Consensus 436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~ 474 (668)
T PLN02260 436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL 474 (668)
T ss_pred CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence 8764322 1 13455677899999999999988654
No 478
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=94.37 E-value=0.21 Score=46.98 Aligned_cols=35 Identities=31% Similarity=0.261 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..++..|. +|++.|.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 35799999999999999999999998 999999875
No 479
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.35 E-value=0.11 Score=52.68 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV 127 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di 127 (412)
|+||+|+||+|.+|..++..+...+.+.-+.+.|.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 57999999999999999988887754333455663
No 480
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.34 E-value=0.2 Score=50.29 Aligned_cols=33 Identities=36% Similarity=0.599 Sum_probs=30.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 95 KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
||.|+|+ |.+|..++..|+..|+ +.++|+|.+.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gv-g~ItIvD~D~ 33 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGF-GEIHIIDLDT 33 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence 6899998 9999999999999995 7999999875
No 481
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.12 Score=51.15 Aligned_cols=57 Identities=19% Similarity=0.399 Sum_probs=46.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+..||.+++.+|..++- .|.+.+. .|.|+++.++.||+||.++|.
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~a--tVt~chs-----------------------~t~~l~~~~~~ADIvI~AvG~ 211 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNENA--TVTYCHS-----------------------KTKNLAELTKQADILIVAVGK 211 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEeC-----------------------CchhHHHHHHhCCEEEEecCC
Confidence 457999999999999999999988886 6766642 134666789999999999987
Q ss_pred CC
Q 015172 172 PR 173 (412)
Q Consensus 172 p~ 173 (412)
|.
T Consensus 212 p~ 213 (284)
T PRK14190 212 PK 213 (284)
T ss_pred CC
Confidence 73
No 482
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.33 E-value=0.41 Score=43.09 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=43.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
.+||.|+|+ |.||...+..|...|. +|++++.+.... ..++.. +......-+. +.+.++|+||.+.
T Consensus 13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~-l~~l~~------i~~~~~~~~~-~dl~~a~lViaaT 78 (157)
T PRK06719 13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKE-MKELPY------ITWKQKTFSN-DDIKDAHLIYAAT 78 (157)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHH-HHhccC------cEEEecccCh-hcCCCceEEEECC
Confidence 478999999 9999999999999998 999997542221 122211 1111111122 3689999999983
No 483
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.33 E-value=0.3 Score=45.88 Aligned_cols=70 Identities=16% Similarity=0.104 Sum_probs=47.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||.|||+ |.+|..-+..|+..|- .|+++|.+.. ....++.+.. .+..+.+.-+. +.+.++|+||.+.+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~~---~i~~~~~~~~~-~dl~~~~lVi~at~ 78 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQG---GITWLARCFDA-DILEGAFLVIAATD 78 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHcC---CEEEEeCCCCH-HHhCCcEEEEECCC
Confidence 368999999 9999999999999997 8999987642 1122232221 23322233233 36899999999844
No 484
>PRK07589 ornithine cyclodeaminase; Validated
Probab=94.33 E-value=0.13 Score=52.30 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=49.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPA 169 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaa 169 (412)
..+++|||+ |..+...+..++.-.-+.+|++||++. ....+.++.+.. ..+. ...+.++++++||||+.+.
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~--~~v~---~~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPG--LRIV---ACRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcC--CcEE---EeCCHHHHHhcCCEEEEec
Confidence 468999998 999988776555432357999999987 344555554421 1122 2467888999999999874
No 485
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.32 E-value=0.22 Score=50.46 Aligned_cols=70 Identities=20% Similarity=0.318 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhC--CCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMS--PLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~--gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||+||||+|++|..+...|..+ +. .+|.++--+...|.-..+.. .. +. +.. .+. .++.++|+|+.+.+
T Consensus 4 ~~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG~~~~~~~--~~--~~-v~~-~~~-~~~~~~Dvvf~a~p 75 (336)
T PRK08040 4 GWNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAGETLRFGG--KS--VT-VQD-AAE-FDWSQAQLAFFVAG 75 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCCceEEECC--cc--eE-EEe-Cch-hhccCCCEEEECCC
Confidence 479999999999999999988884 53 37777754432222222211 11 21 111 121 24689999999864
No 486
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.31 E-value=0.27 Score=47.61 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCC----CC-----eEEEEecCc
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPL----VS-----ALHLYDVMN 129 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl----~~-----ev~L~Di~~ 129 (412)
+..||.|||+ |.+|+.++..|+..|+ ++ +|+|+|-|.
T Consensus 10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 3479999998 9999999999997642 11 899999875
No 487
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.31 E-value=0.26 Score=46.32 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEec
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDV 127 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di 127 (412)
+++|.|+||+|.+|..++..++..|. +|++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 35799999999999999999999997 7877654
No 488
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=94.31 E-value=0.26 Score=50.11 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=43.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
.+||+|+||+|++|..+...|..+++ ..++..+......+...+. ......+. ..+. +++.++|+||.+++
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~~~~~v~----~~~~-~~~~~~D~vf~a~p 78 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EGRDYTVE----ELTE-DSFDGVDIALFSAG 78 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cCceeEEE----eCCH-HHHcCCCEEEECCC
Confidence 47999999999999999988887543 2366666443321221111 11111111 1233 36799999999875
No 489
>PLN00203 glutamyl-tRNA reductase
Probab=94.29 E-value=0.1 Score=55.94 Aligned_cols=73 Identities=15% Similarity=0.308 Sum_probs=49.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchh--hhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVK--GVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~--g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
..||+|||+ |.||..++..|...|. .+|++++.+..+ ..+..+. .. .+. +....++.+++.++|+||.+.+
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~--g~--~i~-~~~~~dl~~al~~aDVVIsAT~ 338 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP--DV--EII-YKPLDEMLACAAEADVVFTSTS 338 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC--CC--ceE-eecHhhHHHHHhcCCEEEEccC
Confidence 478999998 9999999999988884 579999987622 2222221 11 111 1122456668999999999865
Q ss_pred CC
Q 015172 171 VP 172 (412)
Q Consensus 171 ~p 172 (412)
.+
T Consensus 339 s~ 340 (519)
T PLN00203 339 SE 340 (519)
T ss_pred CC
Confidence 44
No 490
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=94.29 E-value=0.28 Score=46.89 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. +|++.|.+.
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~ 44 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQ 44 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence 35799999999999999999999998 899998875
No 491
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.27 E-value=0.13 Score=50.90 Aligned_cols=57 Identities=21% Similarity=0.406 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+..||.+++.+|..++- .|.+.+. .|.|+++.+++||+||.++|.
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~a--tVt~chs-----------------------~T~~l~~~~~~ADIvIsAvGk 212 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMNA--TVTLCHS-----------------------KTQNLPSIVRQADIIVGAVGK 212 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCCC--EEEEeCC-----------------------CCCCHHHHHhhCCEEEEeCCC
Confidence 457999999999999999999998876 6666542 134666678999999999997
Q ss_pred CC
Q 015172 172 PR 173 (412)
Q Consensus 172 p~ 173 (412)
|.
T Consensus 213 ~~ 214 (284)
T PRK14177 213 PE 214 (284)
T ss_pred cC
Confidence 73
No 492
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.26 E-value=0.1 Score=52.63 Aligned_cols=71 Identities=21% Similarity=0.395 Sum_probs=43.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCC-CCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAG 170 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag 170 (412)
++||+|+||+|++|..+...|..+++ ..+|+.+-.+...+...++.. .. +. +. ..+. +.++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g--~~--i~-v~-d~~~-~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG--KE--LK-VE-DLTT-FDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC--ce--eE-Ee-eCCH-HHHcCCCEEEECCC
Confidence 47999999999999999999988654 136666644432222222211 11 11 11 1122 24689999999965
No 493
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.24 E-value=0.14 Score=50.74 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCchhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGV 171 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~ 171 (412)
..++|+|||.+..+|.+++.+|..++- .|.+.+. .|.|+++.+++||+||.++|.
T Consensus 163 ~Gk~vvViGrs~iVGkPla~lL~~~~a--tVtv~hs-----------------------~T~~l~~~~~~ADIvv~AvG~ 217 (287)
T PRK14176 163 EGKNAVIVGHSNVVGKPMAAMLLNRNA--TVSVCHV-----------------------FTDDLKKYTLDADILVVATGV 217 (287)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHCCC--EEEEEec-----------------------cCCCHHHHHhhCCEEEEccCC
Confidence 357999999966699999999998886 7777652 134566678999999999998
Q ss_pred CC
Q 015172 172 PR 173 (412)
Q Consensus 172 p~ 173 (412)
|.
T Consensus 218 p~ 219 (287)
T PRK14176 218 KH 219 (287)
T ss_pred cc
Confidence 83
No 494
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.22 E-value=0.62 Score=47.22 Aligned_cols=115 Identities=17% Similarity=0.191 Sum_probs=66.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCch-hhhhhhhcccCCCCceeeecCCCcHHhhcCC-CcEEEEcC
Q 015172 92 ASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGPEELASALKG-VNVVVIPA 169 (412)
Q Consensus 92 ~~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~~-~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~-aDiVIiaa 169 (412)
+..+|+|+|+ |.+|......+...|. +|+.+|+++. ...+.+|-. ...+. .. ..|..+.+++ +|+||.++
T Consensus 166 pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~-~~-~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVIN-SS-DSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEE-cC-CchhhHHhHhhCcEEEECC
Confidence 3579999999 9887776666666786 9999999873 333333321 11111 11 1222233333 99999997
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCC-CCc--HHHHHHHHHHhCCCCCCCeEecc
Q 015172 170 GVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPV-NST--VPIAAEVLKQKGVYDPKKLFGVT 239 (412)
Q Consensus 170 g~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv-~~~--~pI~t~i~~~~sg~~~~kviGlt 239 (412)
+ + .-+....+. ..+++.++.+.+|- ... +|+. .+ . +...+|.|..
T Consensus 238 ~-~---------------~~~~~~l~~---l~~~G~~v~vG~~~~~~~~~~~~~-~l---i--~~~~~i~GS~ 285 (339)
T COG1064 238 G-P---------------ATLEPSLKA---LRRGGTLVLVGLPGGGPIPLLPAF-LL---I--LKEISIVGSL 285 (339)
T ss_pred C-h---------------hhHHHHHHH---HhcCCEEEEECCCCCcccCCCCHH-Hh---h--hcCeEEEEEe
Confidence 5 3 112223333 34799999999994 321 2221 11 1 3456788873
No 495
>PRK12744 short chain dehydrogenase; Provisional
Probab=94.20 E-value=0.27 Score=46.65 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM 128 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~ 128 (412)
.++|.|+||+|.+|..++..++..|. ++++++.+
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~ 41 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN 41 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence 36899999999999999999999997 77777643
No 496
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=94.18 E-value=0.14 Score=51.77 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=51.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc--hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIP 168 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~--~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIia 168 (412)
...++|||+ |..+...+..+..---+.+|++||+++ .+..+.++...... .+...++.++++++||+||.+
T Consensus 130 a~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~----~v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 130 ASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGE----AVGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCc----cceeccCHHHHhhcCCEEEEe
Confidence 467999998 999888887776653357999999997 45555555554322 122346778899999999997
No 497
>PRK13529 malate dehydrogenase; Provisional
Probab=94.18 E-value=0.28 Score=52.72 Aligned_cols=106 Identities=23% Similarity=0.361 Sum_probs=71.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHh----CCCC-----CeEEEEecCch--hhhhhhhcccC--C---CCcee---eecCCC
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKM----SPLV-----SALHLYDVMNV--KGVAADLSHCN--T---PSQVL---DFTGPE 153 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~----~gl~-----~ev~L~Di~~~--~g~~~dL~~~~--~---~~~v~---~i~~t~ 153 (412)
..||.+.|| |..|.++|.+|.. .|+- ..+.++|.+-+ ... .||.+.. + ..... .-....
T Consensus 295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~~~ 372 (563)
T PRK13529 295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM-PDLLDFQKPYARKREELADWDTEGDVI 372 (563)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC-CcchHHHHHHhhhcccccccccccCCC
Confidence 468999998 9999999988876 5763 48999998741 111 1122111 0 00010 001235
Q ss_pred cHHhhcCCC--cEEEEcCCCCCCCCCchhhHHHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCC
Q 015172 154 ELASALKGV--NVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214 (412)
Q Consensus 154 d~~~al~~a--DiVIiaag~p~k~g~~r~dl~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~ 214 (412)
++.++++++ |+.|=+.+.| | -+-+++++.|.++|++.||+-.|||..
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 788999998 9998776544 1 233678888888999999999999986
No 498
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=94.17 E-value=2.2 Score=41.75 Aligned_cols=156 Identities=13% Similarity=0.119 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCCCCeEEEEecCc---hhhhhhhhcccCCCCceeeecCCCcHHhhcCCCcEEEEcCCCCCCCCCchhhH
Q 015172 106 GQPLALLIKMSPLVSALHLYDVMN---VKGVAADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDL 182 (412)
Q Consensus 106 G~~iA~~l~~~gl~~ev~L~Di~~---~~g~~~dL~~~~~~~~v~~i~~t~d~~~al~~aDiVIiaag~p~k~g~~r~dl 182 (412)
|+.+|+.++..|+ +|+|-|.+. ...+...+.+.. +... ++|- ++.+.+.+.|...-..
T Consensus 33 Ga~mAiefAeAGH--DVVLaePn~d~~dd~~w~~vedAG----V~vv--~dD~-eaa~~~Ei~VLFTPFG---------- 93 (340)
T COG4007 33 GARMAIEFAEAGH--DVVLAEPNRDIMDDEHWKRVEDAG----VEVV--SDDA-EAAEHGEIHVLFTPFG---------- 93 (340)
T ss_pred chHHHHHHHHcCC--cEEeecCCccccCHHHHHHHHhcC----cEEe--cCch-hhhhcceEEEEecccc----------
Confidence 6788999999999 999999975 122222233332 3322 3454 5899999988862111
Q ss_pred HHhhHHHHHHHHHHHHhhCCCeEEEEEcCCCCCcHHHHHHHHHHhCCCC-CCCeEeccccchHHHHHHHHHHcCCCCCCe
Q 015172 183 FNINANIVKTLVEAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYD-PKKLFGVTTLDVVRANTFVAQKKNLKLIDV 261 (412)
Q Consensus 183 ~~~N~~i~~~i~~~i~~~~p~aiviv~TNPv~~~~pI~t~i~~~~sg~~-~~kviGlt~Lds~R~~~~la~~l~v~~~~V 261 (412)
..+..|.+++... .|++-+ +.|++++-.+.+-+.+... ++ +.+=+|+....- -+++-..-
T Consensus 94 -k~T~~Iarei~~h----vpEgAV--icnTCT~sp~vLy~~LE~~--Lr~kR~dVGvssmHP----------AgvPGtp~ 154 (340)
T COG4007 94 -KATFGIAREILEH----VPEGAV--ICNTCTVSPVVLYYSLEGE--LRTKREDVGVSSMHP----------AGVPGTPQ 154 (340)
T ss_pred -hhhHHHHHHHHhh----CcCCcE--ecccccCchhHHHHHhhhh--hcCchhhcCccccCC----------CCCCCCCC
Confidence 2445555555554 565444 4677764322322222221 22 223344421110 12322222
Q ss_pred e-eeEEcccCCcccccccccCCCCCCCChHHHHHHHHHHhhccchhhhc
Q 015172 262 D-VPVVGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEA 309 (412)
Q Consensus 262 ~-~~ViG~hgg~~~vp~~S~~~p~~~~~~~~~~~l~~~v~~~g~eii~~ 309 (412)
+ .|++|+++-. -. .--++++.+...+-....|.+++..
T Consensus 155 h~~yviagr~t~-g~---------elATeEQi~r~velaes~Gk~~yv~ 193 (340)
T COG4007 155 HGHYVIAGRSTE-GK---------ELATEEQIERCVELAESTGKEVYVL 193 (340)
T ss_pred CceEEEeccCCC-ce---------eeccHHHHHHHHHHHHhcCCceEec
Confidence 2 4677766411 10 1136677776666667777666554
No 499
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=94.16 E-value=0.21 Score=51.55 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHhCCC-CCeEE
Q 015172 94 FKVAVLGAAGGIGQPLALLIKMSPL-VSALH 123 (412)
Q Consensus 94 ~KV~VIGAaG~vG~~iA~~l~~~gl-~~ev~ 123 (412)
+||+|.|+ |.+|..+...+..++. ..+|+
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evv 90 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVV 90 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEE
Confidence 69999999 9999999988776632 12666
No 500
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.16 E-value=0.24 Score=48.87 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHhCCCCCeEEEEecCc
Q 015172 93 SFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN 129 (412)
Q Consensus 93 ~~KV~VIGAaG~vG~~iA~~l~~~gl~~ev~L~Di~~ 129 (412)
.+++.|+||+|.+|..++..|+..|. .|++.|...
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~ 46 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS 46 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence 46788999999999999999999998 899999753
Done!