RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015172
(412 letters)
>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome,
NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A
{Citrullus lanatus} PDB: 1sev_A
Length = 326
Score = 492 bits (1269), Expect = e-176
Identities = 207/319 (64%), Positives = 245/319 (76%), Gaps = 2/319 (0%)
Query: 91 QASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFT 150
FKVA+LGAAGGIGQPLA+L+KM+PLVS LHLYDV+N GV AD+SH +T + V F
Sbjct: 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFL 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G ++L +AL G++++++PAGVPRKPGMTRDDLF INA IVKTL E +A CP A +++IS
Sbjct: 66 GQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
NPVNSTVPIAAEV K+ G YDPK+L GVT LDVVRANTFVA+ L DVDVPVVGGHA
Sbjct: 126 NPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 185
Query: 271 GITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVES 330
G+TILPLLS+ P SFT EE+ LT RIQN GTEVVEAKAGAGSATLSMAYAA +F ++
Sbjct: 186 GVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 245
Query: 331 SLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEAL 390
LR L GD V EC FV S +TELPFFAS+V+LGRNG+E + L L EYE+ LE
Sbjct: 246 CLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVY--SLGPLNEYERIGLEKA 303
Query: 391 KPELKASIEKGVAFAQKQA 409
K EL SIEKGV+F +
Sbjct: 304 KKELAGSIEKGVSFIRSHH 322
>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT;
1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*
Length = 314
Score = 485 bits (1251), Expect = e-173
Identities = 188/312 (60%), Positives = 232/312 (74%), Gaps = 2/312 (0%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
KVAVLGA+GGIGQPL+LL+K SPLVS L LYD+ + GVAADLSH T + V + GPE+
Sbjct: 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 155 LASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNPVN 214
L LKG +VVVIPAGVPRKPGMTRDDLFN NA IV TL A A +CPDA I IISNPVN
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 215 STVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGITI 274
ST+PI AEV K+ GVY+P K+FGVTTLD+VRAN FVA+ K L V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 275 LPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRA 334
+PL+S+ P V F +++ LT RIQ AGTEVV+AKAGAGSATLSMAYA ARFV S + A
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 335 LDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKPEL 394
++G V EC FV+S T+ P+F++ + LG+ G+E + + ++ +E+K + PEL
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNL--GIGKISPFEEKMIAEAIPEL 299
Query: 395 KASIEKGVAFAQ 406
KASI+KG F +
Sbjct: 300 KASIKKGEEFVK 311
>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.45A
{Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A*
1ib6_A* 1ie3_A* 4e0b_A*
Length = 312
Score = 475 bits (1225), Expect = e-169
Identities = 185/315 (58%), Positives = 223/315 (70%), Gaps = 6/315 (1%)
Query: 95 KVAVLGAAGGIGQPLALLIKMS-PLVSALHLYDVMNV-KGVAADLSHCNTPSQVLDFTGP 152
KVAVLGAAGGIGQ LALL+K P S L LYD+ V GVA DLSH T ++ F+G
Sbjct: 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISNP 212
E+ AL+G +VV+I AGV RKPGM R DLFN+NA IVK LV+ VA CP A I II+NP
Sbjct: 61 EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 213 VNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPVVGGHAGI 272
VN+TV IAAEVLK+ GVYD KLFGVTTLD++R+NTFVA+ K + +V+VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 273 TILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSL 332
TILPLLS +P VSFT++EV DLT RIQNAGTEVVEAKAG GSATLSM AAARF S +
Sbjct: 181 TILPLLS-QVPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 333 RALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTEYEQKALEALKP 392
RAL G+ V EC +VE + FF+ + LG+NGVE + L+ +EQ ALE +
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERK--SIGTLSAFEQNALEGMLD 297
Query: 393 ELKASIEKGVAFAQK 407
LK I G F K
Sbjct: 298 TLKKDIALGEEFVNK 312
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 182 bits (463), Expect = 4e-54
Identities = 76/320 (23%), Positives = 129/320 (40%), Gaps = 29/320 (9%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ ++GAAG IG +A M L L LYD ++GVA ++ HC L+ T
Sbjct: 10 KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEG--LNLTFT 67
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDA-FIHIISN 211
++ AL +V G PRK GMTR+DL NA I L + + CPD + II N
Sbjct: 68 SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD-VPVVGGHA 270
P + T + P ++ + LD R + +A+ +K V GGH
Sbjct: 128 PADITGLVTLIYSG----LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182
Query: 271 GITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSM 320
G + S + + T+E+ +L R+ G +++ + S+ S
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVES-NLTELPFFASRVKLGRNGVESLISSDLQGL 379
+Y + + +++ +V + A + ++GV+ + L
Sbjct: 241 SYVSIEMIRAAMG--GEAFRWPAGCYVNVPGFEHI-MMAMETTITKDGVKHSDINQL--G 295
Query: 380 TEYEQKALEALKPELKASIE 399
E E+ AL+ L +
Sbjct: 296 NEAERAALKESYSHLAKLRD 315
>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent
interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula
marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A*
2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A
Length = 303
Score = 153 bits (388), Expect = 2e-43
Identities = 80/331 (24%), Positives = 136/331 (41%), Gaps = 56/331 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV----AADLSHCNTPSQVLDFT 150
KV+V+GAAG +G I + + + D+ + + AAD +H + +
Sbjct: 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55
Query: 151 GPEELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
+ G +VVVI AG+PR+PG TR DL NA I++ + ++ ++ D
Sbjct: 56 SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115
Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
SNPV+ + +++ G LD R ++++ + + +V+ +
Sbjct: 116 LTTSNPVDLLNRHL---YEAGD-RSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171
Query: 266 VGGHAGITILPLLSKTM---PSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
+G H G +P+ SK F+ +E L +Q + +V+E K G+ A
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK---GATEWGPAR 227
Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
A VE+ L L+G+ D V P V LG NGVE
Sbjct: 228 GVAHMVEAILHDTGEVLPASVKLEGEFGHEDTAFGV---------P-----VSLGSNGVE 273
Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
++ D L +YEQ + +L +K
Sbjct: 274 EIVEWD---LDDYEQDLMADAAEKLSDQYDK 301
>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain,
oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus
jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*
Length = 313
Score = 152 bits (387), Expect = 2e-43
Identities = 79/332 (23%), Positives = 148/332 (44%), Gaps = 50/332 (15%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN----VKGVAADLSHC----NTPSQV 146
KV ++GA+G +G ALL+ P + L L + ++G+ D+ + + +
Sbjct: 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 147 LDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
+ +E + +VV+I +GVPRK GM+R DL NA IV + +A+ C
Sbjct: 62 --YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119
Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
+I+NPV+ + + L ++ ++FG+ T LD +R +A+ + + +V +
Sbjct: 120 -VITNPVDV---MTYKALVDSK-FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174
Query: 266 VGGHAGITILPLLSKTMPS-------VSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
+G H G +++PLLS T F + + ++ ++ G +++ K G +
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEF 230
Query: 319 SMAYAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGV 368
A A V + +DG+ D V + +P VK+GR+G+
Sbjct: 231 GPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCI-----GVP-----VKIGRDGI 280
Query: 369 ESLISSDLQGLTEYEQKALEALKPELKASIEK 400
E ++S + L + E A +K E+
Sbjct: 281 EEVVSIE---LDKDEIIAFRKSAEIIKKYCEE 309
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 148 bits (375), Expect = 2e-41
Identities = 85/331 (25%), Positives = 150/331 (45%), Gaps = 54/331 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
KV V+GA G +G +A + + + + D+ + +G A D+ S + F
Sbjct: 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRES---SPIHGFDTR 57
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
TG + + +V +I AG+PR PGM+RDDL N IV + E + PD+ I +
Sbjct: 58 VTGTNDY-GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
++NP++ + + G + ++ G+ LD R +F+A++ ++ + DV ++G
Sbjct: 117 VANPLDV---MTYVAYEASG-FPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 268 GHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
GH G T++PL T +P D + ++ R + AG E+V+ SA +
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229
Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
AAA E+ L+ DG+ D++ +P VKLG GVE
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDGEYGLDDLF---------IGVP-----VKLGAGGVE 275
Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
+I D L E+ L+ + ++++
Sbjct: 276 EVIEVD---LDADEKAQLKTSAGHVHSNLDD 303
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 146 bits (370), Expect = 7e-41
Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 56/337 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ V+GA G +G A + L L L DV+ +G A D+ V F
Sbjct: 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES---GPVGLFDTK 57
Query: 153 EELA---SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
+ + ++V+I AG+PRKPGMTR+DL NA IVK + + + + + I ++
Sbjct: 58 VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
SNP++ +A + G +++ G+ LD R +F+A + + + D++ V+GG
Sbjct: 118 SNPLDIMTHVA---WVRSG-LPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173
Query: 269 HAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
H G ++P++ T +P E + L R +N G E+VE GSA + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231
Query: 324 AARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVES 370
VES + L+G + +P VKLGRNGVE
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTF---------VGVP-----VKLGRNGVEQ 277
Query: 371 LISSDLQGLTEYEQKAL----EALKPELKASIEKGVA 403
+ + L + + L + + E +E +
Sbjct: 278 IYEIN---LDQADLDLLQKSAKIVD-ENCKMLESTIG 310
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 144 bits (367), Expect = 3e-40
Identities = 87/336 (25%), Positives = 157/336 (46%), Gaps = 59/336 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLD 148
K++++GA G IG +ALL+ L ++++D++ +G A DL+HC +P+++
Sbjct: 16 KISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
E L + +VV+I AGVPRKP MTR DL +NA IV ++ E V CP+AF+
Sbjct: 74 ENNYEYL----QNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP+++ + ++ G K+ G+ LD R +++ +K DV VVG
Sbjct: 130 ITNPLDA---MVYYFKEKSG-IPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVG 185
Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
GH G ++PL S + T ++ ++ + G E+VE GSA
Sbjct: 186 GH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAF 243
Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
+ A +A ++ L+ L G +++ +P V +G
Sbjct: 244 YAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNLF---------VGVP-----VVIG 289
Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
+NG+E ++ + L++ E+ ++ ++
Sbjct: 290 KNGIEDVVIVN---LSDDEKSLFSKSVESIQNLVQD 322
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 143 bits (362), Expect = 1e-39
Identities = 87/331 (26%), Positives = 150/331 (45%), Gaps = 54/331 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
K++++GA G +G A + L + L D++ +G A DL S + F
Sbjct: 4 KISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEA---SPIEGFDVR 58
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
TG + +V+V+ +G PRKPGM+R+DL +NA+I + + A P+A I +
Sbjct: 59 VTGTNNY-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIM 117
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
++NP+++ +A + G + +++ G LD R TF+A + + + DV ++G
Sbjct: 118 VNNPLDAMTYLA---AEVSG-FPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMG 173
Query: 268 GHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAY 322
GH G ++PL + +P F + + + R + G E+V GSA + A
Sbjct: 174 GH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAA 231
Query: 323 AAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVE 369
A A+ VE+ L+ L G D+Y +P V LG GVE
Sbjct: 232 ATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY---------FGVP-----VILGAGGVE 277
Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
++ L E E L A ++A+++
Sbjct: 278 KILELP---LNEEEMALLNASAKAVRATLDT 305
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 142 bits (360), Expect = 2e-39
Identities = 79/330 (23%), Positives = 143/330 (43%), Gaps = 55/330 (16%)
Query: 96 VAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLDF 149
+ +LGA G +G A+++ M L L +G A DL+H ++
Sbjct: 2 ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS 59
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHII 209
E++ +G ++V++ AG+ RKPGMTR+ L NAN + L E + DA + I
Sbjct: 60 NSYEDM----RGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115
Query: 210 SNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGG 268
+NPV++ + + K+ G + +++ G LD R +++QK + V+ V+G
Sbjct: 116 TNPVDA---MTYVMYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171
Query: 269 HAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYA 323
H G + P+ + +P + EE+ ++ NAG ++ E + S+ A
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR--GYSSNYGPAAG 228
Query: 324 AARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVES 370
VE+ R L G+ D+ E+P +G++G+E
Sbjct: 229 LVLTVEAIKRDSKRIYPYSLYLQGEYGYNDIV---------AEVP-----AVIGKSGIER 274
Query: 371 LISSDLQGLTEYEQKALEALKPELKASIEK 400
+I LTE E++ + +K +E
Sbjct: 275 IIELP---LTEDEKRKFDEAVQAVKKLVET 301
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 141 bits (359), Expect = 4e-39
Identities = 84/336 (25%), Positives = 144/336 (42%), Gaps = 59/336 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
K+AV+G+ G IG +A ++ L + + L+D+ +G A D++H +
Sbjct: 6 KIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHS---MVMFGSTSK 60
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
G ++ + + G +VV+I A +P +P R +L NA I+ ++ E V CP+AF+
Sbjct: 61 VIGTDDY-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVIC 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP++ + + K G K+ G+ LD R TF+AQ + DV V+G
Sbjct: 120 ITNPLDV---MVSHFQKVSG-LPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIG 175
Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
GH G ++P S + T E++ ++ + A EV + G+A
Sbjct: 176 GH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAY 233
Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
+ A AA + E+ L+ +Y +P +G
Sbjct: 234 FAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIY---------MGVP-----TIIG 279
Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
+NGVE ++ D LT EQK L E+ +
Sbjct: 280 KNGVEDILELD---LTPLEQKLLGESINEVNTISKV 312
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 141 bits (358), Expect = 5e-39
Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 62/339 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
KV ++G G +G A + + + DV+ KG A DL FT P
Sbjct: 7 KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA------QAFTAP 59
Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+++ S K ++VVI AG P+KPG +R DL N N NI+ ++V+ V D+ D +
Sbjct: 60 KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
+NPV+ I + + +++ G T+LD R + ++ N+ VD ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175
Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
H G + S +D+++ L ++N +++ K G+
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231
Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
+ A R ++ LR +DG D+Y P +G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIY---------IGTP-----AIIG 277
Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
G++ +I S L+ E K ++ LK + G+A
Sbjct: 278 GTGLKQIIESP---LSADELKKMQDSAATLKKVLNDGLA 313
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 141 bits (357), Expect = 7e-39
Identities = 92/332 (27%), Positives = 154/332 (46%), Gaps = 54/332 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAA----DLSHCNTPSQVLDFT 150
KV+V+GA G G A L+ L + L D+ ++ D+ S V F
Sbjct: 10 KVSVIGA-GFTGATTAFLLAQKELAD-VVLVDIPQLENPTKGKALDMLEA---SPVQGFD 64
Query: 151 GPEELA---SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ +VVVI AG+ RKPGM+RDDL N+ I+K++ +A + P+A I
Sbjct: 65 ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
+++NPV++ + V K+ G + +++ G LD R TF+AQ+ NL + D+ V+
Sbjct: 125 VLTNPVDA---MTYSVFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180
Query: 267 GGHAGITILPLLSKT----MPSVSF-TDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
GGH G ++PL+ + +P + E + + R + G E+V G GSA + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238
Query: 322 YAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGV 368
+ E+ L+ L+G+ D+Y V P V LG NG+
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDLYLGV---------P-----VILGGNGI 284
Query: 369 ESLISSDLQGLTEYEQKALEALKPELKASIEK 400
E +I + L E++AL+ ++ ++
Sbjct: 285 EKIIELE---LLADEKEALDRSVESVRNVMKV 313
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 140 bits (356), Expect = 9e-39
Identities = 90/336 (26%), Positives = 156/336 (46%), Gaps = 59/336 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
K+A++G+ G IG LA L + L + L+D+ +G D++ S V F
Sbjct: 9 KIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAES---SPVDGFDAK 63
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
TG + +A++G +VV++ AGVPRKPGM+RDDL IN +++ + + P+AF+
Sbjct: 64 FTGANDY-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVIC 122
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP+++ + + K G K+ G+ LD R F++++ N+ + DV V V+G
Sbjct: 123 ITNPLDA---MVWALQKFSG-LPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLG 178
Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
GH G +++PL + + + +++ + R ++ G E+V GSA
Sbjct: 179 GH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAF 236
Query: 318 LSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLG 364
+ A +A + ES L+ L G D+Y +P +G
Sbjct: 237 YAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDMY---------VGVP-----TVIG 282
Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
NGVE +I D L + E+ + + E
Sbjct: 283 ANGVERIIEID---LDKDEKAQFDKSVASVAGLCEA 315
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 140 bits (355), Expect = 2e-38
Identities = 77/340 (22%), Positives = 127/340 (37%), Gaps = 62/340 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
KVA++GA G +G A + + L + DV G DL+H P V
Sbjct: 7 KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY 65
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G K ++V I AG +KPG TR +L N I K +V V + D + +
Sbjct: 66 GT---YEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT 122
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ I + +++ G TTLD R +++ +V ++G H
Sbjct: 123 NPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
G+ + L+ K + EE+ + ++NA ++E K G+
Sbjct: 179 GDTELPVWSHANVGGVPVSELVEKNDA---YKQEELDQIVDDVKNAAYHIIEKK---GAT 232
Query: 317 TLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKL 363
+A + AR ++ L LDG DVY +P +
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVY---------IGVP-----AVV 278
Query: 364 GRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
R G+ + + L E E++ LK ++ A
Sbjct: 279 NRGGIAGITELN---LNEKEKEQFLHSAGVLKNILKPHFA 315
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 140 bits (355), Expect = 2e-38
Identities = 80/341 (23%), Positives = 146/341 (42%), Gaps = 63/341 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
KVA++G+ G IG + L + L + LYDV+ +G A DLSH + V+D
Sbjct: 11 KVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHV---TSVVDTNVS 65
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGM-----TRDDLFNINANIVKTLVEAVADNCPD 203
+AL G + V++ AG+ + PG +R+DL N+ I++ + + + CP
Sbjct: 66 VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
FI +++NP++ + + + G + G+ LD R +VA ++ DV
Sbjct: 126 TFIIVVTNPLDC---MVKVMCEASG-VPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 263 VPVVGGHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAG 312
V+G H G ++PL+ + T++++ ++ + +G E+V G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239
Query: 313 AGSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFAS 359
GSA + A +A S L +G+ D++ LP
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDMF---------IGLP---- 286
Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
+G G+E +I + L E E+K + ++ A +
Sbjct: 287 -AVIGGAGIERVIELE---LNEEEKKQFQKSVDDVMALNKA 323
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 139 bits (353), Expect = 3e-38
Identities = 70/338 (20%), Positives = 127/338 (37%), Gaps = 62/338 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
+V V+GA G +G + + + L D G A D +H P V +
Sbjct: 8 RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G + ++VVI AG +KPG TR DL + N I +++VE+V + + +
Sbjct: 67 GD---YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ I + +++ G T LD R + + ++ +V ++G H
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH 179
Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
+ I L+ +++ + V +++A +++E K G+
Sbjct: 180 GDTELPVWSQAYIGVMPIRKLVESKG---EEAQKDLERIFVNVRDAAYQIIEKK---GAT 233
Query: 317 TLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKL 363
+A AR + L LDG DVY +P +
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVY---------IGVP-----AVI 279
Query: 364 GRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKG 401
RNG+ +I + L + E+ LK+ + +
Sbjct: 280 NRNGIREVIEIE---LNDDEKNRFHHSAATLKSVLARA 314
>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD;
2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*
Length = 333
Score = 139 bits (352), Expect = 3e-38
Identities = 74/339 (21%), Positives = 124/339 (36%), Gaps = 43/339 (12%)
Query: 95 KVAVLGAAGGIGQPLALLI------KMSPLVSALHLYDVMNV----KGVAADLSHCNTP- 143
+V V GAAG I L I + L L D+ + GV +L C P
Sbjct: 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII-LVLLDITPMMGVLDGVLMELQDCALPL 63
Query: 144 -SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
V+ E A K ++V ++ +PR+ GM R DL N I K A+
Sbjct: 64 LKDVIATDKEEI---AFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 203 -DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDV 261
+ ++ NP N+ A+ K + +T LD RA +A K + DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177
Query: 262 DVPVVGGHAGITILPLLSKTM----------PSVSFTDEEV-GDLTVRIQNAGTEVVEAK 310
++ G+ T P ++ D + G+ +Q G V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237
Query: 311 AGAGSATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELP---FFASRVKLGRN 366
SA +S A A V +G+ + + N +P ++ V +
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFGTP-EGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDK 294
Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFA 405
+ I L + ++ ++ ++ EL EK AF
Sbjct: 295 TWK--IVEGLP-INDFSREKMDLTAKELAE--EKETAFE 328
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 139 bits (352), Expect = 4e-38
Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 67/342 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
KV ++G G +G A + + + + + D+ KG A DLS+ L FT P
Sbjct: 11 KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA------LPFTSP 63
Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+++ SA K ++VVI AG P+KPG TR DL N N I+K++V+ + D+ + +
Sbjct: 64 KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
+NPV+ I + + ++ G T+LD R +A+ N+ V ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
H G+TI + ++++ + +++A E+++ K G
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPE---IKEDKLVKMFEDVRDAAYEIIKLK---G 233
Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
+ +A A AR ++ L +DG D+Y P
Sbjct: 234 ATFYGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIY---------IGTP-----A 279
Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVA 403
+ RNG+++++ LT++E+++++ +LK + A
Sbjct: 280 VINRNGIQNILEIP---LTDHEEESMQKSASQLKKVLTDAFA 318
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 139 bits (352), Expect = 4e-38
Identities = 68/340 (20%), Positives = 130/340 (38%), Gaps = 66/340 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+AV+GA G +G LA + + L D+ V+ D+ H F
Sbjct: 9 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG------SSFYPT 61
Query: 153 EELASA-----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
+ + + ++VVI AG +KPG +R +L NI+K ++ + P+A
Sbjct: 62 VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
+I+NPV+ IA V ++ ++FG T LD R +AQ+ + + +V +
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 267 GGH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGA 313
G H G+ + ++ ++ ++NA +++ K
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWT-PLPGHDPLDADKREEIHQEVKNAAYKIINGK--- 233
Query: 314 GSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASR 360
G+ ++ + +E+ L L D+ +P
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDIC---------MSVP----- 279
Query: 361 VKLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
L R GV + I++ +++ E AL+ LK + +
Sbjct: 280 TLLNRQGVNNTINTP---VSDKELAALKRSAETLKETAAQ 316
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 138 bits (351), Expect = 4e-38
Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 57/334 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCN--TPSQVLDFT 150
KV ++G G +G A + +V L + D+ V+G DL H +P+ V
Sbjct: 8 KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA 66
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
G S ++VVI AG +KPG TR DL + N I K++V V + D + +
Sbjct: 67 GE---YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ I A + +++ G T LD R +++ ++ VD ++G H
Sbjct: 124 NPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH 179
Query: 270 AGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLS 319
G T LP+ S + ++ + V+ ++A ++++AK G+
Sbjct: 180 -GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GATYYG 235
Query: 320 MAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRN 366
+A AR E+ R L+G+ DVY +P + RN
Sbjct: 236 VAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVY---------IGVP-----AVINRN 281
Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
G+ +++ L + EQ LK + +
Sbjct: 282 GIRNVVEIP---LNDEEQSKFAHSAKTLKDIMAE 312
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 138 bits (349), Expect = 1e-37
Identities = 91/351 (25%), Positives = 143/351 (40%), Gaps = 67/351 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ ++G G +G A + M + L DV +G A DL H FT
Sbjct: 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG------TPFTRR 54
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ + LKG +VV++ AGVP+KPG TR L NA ++K + V+ PD+ + +
Sbjct: 55 ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
++NPV+ LK+ G DP+K+FG T LD R T +AQ V V V+G
Sbjct: 115 VTNPVDVLTYFF---LKESG-MDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170
Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
H GI + + + + + + + A E++E K G
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQK---CDSKILENFAEKTKRAAYEIIERK---G 224
Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
+ ++A A A VES L+ D+ +P V
Sbjct: 225 ATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLC---------ISVP-----V 270
Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEKGVAFAQKQAVAA 412
LG++GVE ++ + L E E +A LK +I + A K +
Sbjct: 271 TLGKHGVERILELN---LNEEELEAFRKSASILKNAINEITAEENKHQNTS 318
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 137 bits (347), Expect = 2e-37
Identities = 70/339 (20%), Positives = 121/339 (35%), Gaps = 66/339 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
KV ++G+ G +G A + + + + L D+ + A D+ H F P
Sbjct: 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA------TPFAHP 54
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ L+G VV+ AGV ++PG TR L + NA + +V V + P+A + +
Sbjct: 55 VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
+NPV+ + +V P ++ G T LD R +A+ + V V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170
Query: 268 GH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
H G+ +L + + E+ + ++ A ++E K G
Sbjct: 171 EHGDSEVLVWSSAQVGGVPLLEFAEAR--GRALSPEDRARIDEGVRRAAYRIIEGK---G 225
Query: 315 SATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRV 361
+ + AR V + L +V LP
Sbjct: 226 ATYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVS---------LSLP-----R 271
Query: 362 KLGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
LG GV + L+ E+ AL LK +
Sbjct: 272 ILGAGGVAGTVYPS---LSPEERAALRRSAEILKEAAFA 307
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 137 bits (347), Expect = 2e-37
Identities = 84/338 (24%), Positives = 144/338 (42%), Gaps = 64/338 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
KVA++GA G +G A + + + L L DV G A D++H L F G
Sbjct: 9 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
L S +K +V+V+ AG RKPG TR DL N I K + + + I +
Sbjct: 62 MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
+SNPV+ I ++++ K+ G T LD +R +++K + + +V ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 268 GHAGITILPLLSKT------------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGS 315
H G + LPL S T P +FT+E+ + ++ AG +++ K G+
Sbjct: 178 EH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA 233
Query: 316 ATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVK 362
+A + VE+ L+ ++G DV LP
Sbjct: 234 TYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVA---------ISLP-----SI 279
Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
+ GV+ ++ + LT E++AL ++K + +
Sbjct: 280 VNSEGVQEVLQFN---LTPEEEEALRFSAEQVKKVLNE 314
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 136 bits (346), Expect = 3e-37
Identities = 85/345 (24%), Positives = 139/345 (40%), Gaps = 71/345 (20%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDF--- 149
K+ ++G+ G IG +A LI L + L+D++ G A D SH + +
Sbjct: 6 KIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHT---NVMAYSNCK 60
Query: 150 -TGPEELASALKGVNVVVIPAGVPRKPGMT-----RDDLFNINANIVKTLVEAVADNCPD 203
+G L G +VV++ AG + PG + RDDL +N I+ + + NCP+
Sbjct: 61 VSGSNTY-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPN 119
Query: 204 AFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVD 262
AFI +++NPV+ + + + G K+ G+ LD R +++QK N+ DV+
Sbjct: 120 AFIIVVTNPVDV---MVQLLHQHSG-VPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVN 175
Query: 263 VPVVGGHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAG 312
+VG H G ++ L + + +D E+ + R N E+V
Sbjct: 176 AHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH-- 232
Query: 313 AGSATLSMAYAAARFVESSLR----------ALDGD---GDVYECVFVESNLTELPFFAS 359
S ++ A A ES L+ L+G D++ P
Sbjct: 233 -ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDIF---------GGTP---- 278
Query: 360 RVKLGRNGVESLISSDLQGLTEYEQKAL----EALKPELKASIEK 400
V LG NGVE +I L E+ K +KA
Sbjct: 279 -VVLGANGVEQVIELQ---LNSEEKAKFDEAIAETK-RMKALAHH 318
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 138 bits (349), Expect = 3e-37
Identities = 70/326 (21%), Positives = 121/326 (37%), Gaps = 36/326 (11%)
Query: 95 KVAVLGAAGGIGQPLALLI------KMSPLVSALHLYDVM----NVKGVAADLSHCNTP- 143
+AV GAAG I L + ++ L L ++GVA +L P
Sbjct: 34 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92
Query: 144 -SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
+V P E + V+ ++ PR PGM R L +IN I +A+
Sbjct: 93 LREVSIGIDPYE---VFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149
Query: 203 DAF-IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDV 261
+ ++ NP N+ I LK K +T LD RA +A K + V
Sbjct: 150 KNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206
Query: 262 DVPVVGGHAGITILPLLSKT-------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAG 314
+ G+ T +P + T + T+ +Q G +++ G
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265
Query: 315 SATLSMAYAAARFVESSLRALDGDGDVYEC-VFVESNLTELP---FFASRVKLGRNGVES 370
SA S A + A ++S + +GD + V+ N + F+ + +G
Sbjct: 266 SA-ASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYE 323
Query: 371 LISSDLQGLTEYEQKALEALKPELKA 396
L +D+ ++ + ++ + EL A
Sbjct: 324 LA-TDVS-NDDFLWERIKKSEAELLA 347
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 136 bits (344), Expect = 5e-37
Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 62/338 (18%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC----NTPSQVLD 148
K+ ++GA G IG LA L + L + L+D+ G A DL +V
Sbjct: 7 KITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG 64
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
++L + +VV++ AGVPRKPGM+RDDL IN +++T+ E + NCP+AF+
Sbjct: 65 TNDYKDL----ENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVIC 120
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
I+NP++ + + K G K+ G+ LD R TF+A + N+ + V V+G
Sbjct: 121 ITNPLDI---MVNMLQKFSG-VPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMG 176
Query: 268 GHAGITILPLLSKT----------MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSAT 317
GH G T++PL + + E + + R ++ G E+V GSA
Sbjct: 177 GH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAY 234
Query: 318 LSMAYAAARFVESSLR----------ALDG-----DGDVYECVFVESNLTELPFFASRVK 362
+ A A + ES L+ + D D++ +P +
Sbjct: 235 YAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLF---------VGVP-----TE 280
Query: 363 LGRNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
+ NGV + +++ +++ E++ L+ +K +
Sbjct: 281 ISANGVRPI---EVE-ISDKEREQLQVSINAIKDLNKA 314
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 133 bits (338), Expect = 5e-36
Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 54/334 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC--NTPSQVLDFT 150
K+ V+G G +G A+ I M L L L DV+ +KG DL H + + +
Sbjct: 21 KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS 79
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
S +V+I AG ++ G +R +L N NI K ++ V P + I+S
Sbjct: 80 KD---YSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS 136
Query: 211 NPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGH 269
NPV+ I V + + ++ G LD R + ++ + + V+G H
Sbjct: 137 NPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEH 192
Query: 270 -------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSA 316
AG+++ L + E+ D+ ++ ++ EV++ K G
Sbjct: 193 GDSSVPVWSGVNVAGVSLKSLNPQL--GTDADKEQWKDVHKQVVDSAYEVIKLK---GYT 247
Query: 317 TLSMAYAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRN 366
+ ++ + A ES ++ + G + E VF+ +P LG+N
Sbjct: 248 SWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFL-----SVP-----CILGQN 297
Query: 367 GVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
G+ ++ LT E+ L+ L ++
Sbjct: 298 GISDVVKVT---LTPDEEARLKKSADTLWGIQKE 328
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 132 bits (335), Expect = 5e-36
Identities = 78/326 (23%), Positives = 138/326 (42%), Gaps = 56/326 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ +GA G +G A ++ V + L D+ G A DL+H + +D P
Sbjct: 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHA---AAGIDKY-P 56
Query: 153 EELASA----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ + A LKG ++V+ AG+ RKPGMTR DL + NA I+K + + + +N P++ I +
Sbjct: 57 KIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVG 267
++NP++ I K+ G ++FG+ LD R + ++G
Sbjct: 117 VTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRLKERLYNA--GARNIRRAWIIG 170
Query: 268 GHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARF 327
H G ++ S + + + ++ EV++ K G+ A A R
Sbjct: 171 EH-GDSMFVAKSLA--DFD-GEVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRM 223
Query: 328 VESSLR----------ALDGD---GDVYECVFVESNLTELPFFASRVKLGRNGVESLISS 374
V++ + L G+ +V V P KLG+NG E
Sbjct: 224 VKAVVEDTGEIIPTSMILQGEYGIENVAVGV---------P-----AKLGKNGAEVA--- 266
Query: 375 DLQGLTEYEQKALEALKPELKASIEK 400
D++ L++ E + L L+ +E+
Sbjct: 267 DIK-LSDEEIEKLRNSAKILRERLEE 291
>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex,
oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus}
SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A*
1bdm_A* 1wze_A* 1wzi_A*
Length = 327
Score = 133 bits (336), Expect = 7e-36
Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 31/325 (9%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSA-----LHLYDVM----NVKGVAADLSHCNTP-- 143
+VAV GAAG IG L I ++ L L ++ ++GV +L C P
Sbjct: 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65
Query: 144 SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP- 202
+ + P+ A K + ++ PRK GM R DL +N I A+A+
Sbjct: 66 AGLEATDDPKV---AFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 203 DAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVD 262
D + ++ NP N+ IA K +P+ +T LD RA +A+K + +
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179
Query: 263 VPVVGGHAGITILPLLSKT----MPSVSFTDEE--VGDLTVRIQNAGTEVVEAKAGAGSA 316
V G+ T+ P L P++ D E + G +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238
Query: 317 TLSMAYAAARFVESSLRALDGDGDVYECVFVESNLTELP--FFASRVKLGRNGVESLISS 374
S A AA + +GD +P S ++G ++
Sbjct: 239 -ASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVV-E 295
Query: 375 DLQGLTEYEQKALEALKPELKASIE 399
L+ + E+ +K +E EL +E
Sbjct: 296 GLE-INEFARKRMEITAQELLDEME 319
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 131 bits (333), Expect = 2e-35
Identities = 78/336 (23%), Positives = 126/336 (37%), Gaps = 66/336 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
KV V+G G +G A + + S L L D + A D++H +
Sbjct: 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54
Query: 153 EELA----SALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ S L VV++ AG +KPG +R DL NA+I + LV + PDA + +
Sbjct: 55 TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114
Query: 209 ISNPVNSTVPIAAEVLKQKGVYDPK-KLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
SNPV+ +A ++ P + G T LD R +AQ + V+
Sbjct: 115 TSNPVDLLTDLATQLA-------PGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167
Query: 267 GGH-------------AGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGA 313
G H AG+ + + ++ + ++ + +NA ++E K
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQ--NLPWNEQVRAKIDEGTRNAAASIIEGK--- 222
Query: 314 GSATLSMAYAAARFVESSLR---------ALDGDGDVYECVFVESNLTELPFFASRVKLG 364
+ + A AR E+ LR A + V LP +G
Sbjct: 223 RATYYGIGAALARITEAVLRDRRAVLTVSAPTPEYGVS---------LSLP-----RVVG 268
Query: 365 RNGVESLISSDLQGLTEYEQKALEALKPELKASIEK 400
R GV S + LT EQ+ LE L+ ++
Sbjct: 269 RQGVLSTLHPK---LTGDEQQKLEQSAGVLRGFKQQ 301
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 131 bits (332), Expect = 2e-35
Identities = 65/323 (20%), Positives = 109/323 (33%), Gaps = 64/323 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVM-NVKGVAADLSHCNTPSQVL--DFTG 151
K+ V+G G +G L I + L L D+ KG DL N P+ + D
Sbjct: 16 KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-- 72
Query: 152 PEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIISN 211
SA VV+ + D+ N ++ + LV A+ + + + S
Sbjct: 73 -----SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126
Query: 212 PVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVVGGHA 270
P V I V + + ++ G+ LD R + + +V V+G
Sbjct: 127 P----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ- 181
Query: 271 GITILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVES 330
G + S VS T + ++ N E++ K G + S+ + A V+S
Sbjct: 182 GEDKVLTWSGQEEVVSHTSQV------QLSNRAMELLRVK---GQRSWSVGLSVADMVDS 232
Query: 331 SLR----------ALDG----DGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDL 376
+ G + +V+ LP LG NGV +I +
Sbjct: 233 IVNNKKKVHSVSALAKGYYDINSEVF---------LSLP-----CILGTNGVSEVIKTT- 277
Query: 377 QGLTEYEQKALEALKPELKASIE 399
L E L++S
Sbjct: 278 --LKEDTVTEK------LQSSAS 292
>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A
{Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB:
1b8u_A* 1b8v_A* 3d5t_A
Length = 329
Score = 129 bits (326), Expect = 2e-34
Identities = 58/252 (23%), Positives = 95/252 (37%), Gaps = 29/252 (11%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPL-----VSALHLYDVMN------VKGVAADLSHCNTP 143
+VAV GAAG I L I + L L ++ N ++GV ++ C P
Sbjct: 7 RVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFP 66
Query: 144 --SQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
+ + P A K +V ++ PR PGM R DL NA I +A+
Sbjct: 67 LLAGMTAHADPMT---AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVA 123
Query: 202 -PDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLID 260
+ + ++ NP N+ IA +K K + LD RA + +A K +
Sbjct: 124 SRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSS 180
Query: 261 VDVPVVGGHAGITILPLLSKT----MPSVSFTDEEV---GDLTVRIQNAGTEVVEAKAGA 313
++ V G+ T+ +++ + G +++A+ G
Sbjct: 181 IEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-GV 239
Query: 314 GSATLSMAYAAA 325
SA S A AA
Sbjct: 240 SSA-ASAANAAI 250
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 125 bits (317), Expect = 5e-33
Identities = 63/318 (19%), Positives = 110/318 (34%), Gaps = 47/318 (14%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHCNTPSQVLDFTGP 152
K+ V+G +G A+ + M L + L DVM +KG DL H F
Sbjct: 23 KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHG------SLFLHT 75
Query: 153 EELASA-----LKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIH 207
++ S G +VVI AG ++ G +R +L N NI K ++ + + PD
Sbjct: 76 AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135
Query: 208 IISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPVV 266
+ K G ++ G LD R + ++ + V V+
Sbjct: 136 LHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191
Query: 267 GGHAGITILPLLSKTMPS-----VSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMA 321
G H G ++ + S + V + EV L A VV +
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250
Query: 322 YAAARFVESSLR----------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESL 371
+ A ++ ++ + + + VF+ LP L NG+
Sbjct: 251 CSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFL-----SLP-----CVLN-NGISHC 299
Query: 372 ISSDLQGLTEYEQKALEA 389
++ L E++ L+
Sbjct: 300 NIVKMK-LKPDEEQQLQK 316
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 123 bits (312), Expect = 1e-32
Identities = 59/331 (17%), Positives = 115/331 (34%), Gaps = 54/331 (16%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMN--VKGVAADLSHC--NTPSQVLDFT 150
K+ ++G G +G +A + + D VK D N +
Sbjct: 3 KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61
Query: 151 GPEELASALKGVNVVVIPAGVPR----KPGMTRDDLFNINANIVKTLVEAVADNCPDAFI 206
+AL +VV+ G + P R +++V+++ + ++ +
Sbjct: 62 ND---WAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVL 118
Query: 207 HIISNPVNSTVPIAAEVLKQKGVYDPKKLFGV-TTLDVVRANTFVAQKKNLKLIDVDVPV 265
+ISNPV+ + + + + K+ G T LD R V + +L V
Sbjct: 119 VVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVSGYN 174
Query: 266 VGGHAGITILPLLSKT----MPSVSFTD---EEVGDLTVRIQNAGTEVVEAKAGAGSATL 318
+G H G + S P V+ D ++ + + G V+ K G +
Sbjct: 175 LGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYTSY 230
Query: 319 SMAYAAARFVESSLR---------ALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVE 369
+A +A R ++ + D +Y P +GR+GV
Sbjct: 231 GVATSAIRIAKAVMADAHAELVVSNRRDDMGMY---------LSYP-----AIIGRDGVL 276
Query: 370 SLISSDLQGLTEYEQKALEALKPELKASIEK 400
+ + D LT EQ+ L + ++ ++
Sbjct: 277 AETTLD---LTTDEQEKLLQSRDYIQQRFDE 304
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.2 bits (166), Expect = 2e-12
Identities = 69/368 (18%), Positives = 121/368 (32%), Gaps = 120/368 (32%)
Query: 2 AATSATTFSITSTIAFGPKAG--QLPQ---------SKPSGVRFNSKKSLVSFSGLKAVT 50
+ T + ++ I+ P G QL P +R K + GL VT
Sbjct: 223 SNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL--VT 279
Query: 51 SV-ICESNT--SFLNKESCSALRSTFARKAQSSEQRPQYALQP---QASFKVAVLGAAGG 104
+V I E+++ SF A+ F + E P +L P + S
Sbjct: 280 AVAIAETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS-------LENN 331
Query: 105 IGQPLALLIKMSPL--VSALHLYDV------MNVKGVAAD---LSHCNTPSQ-VLDFTGP 152
G P SP+ +S L V N A +S N V+ +GP
Sbjct: 332 EGVP-------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SGP 382
Query: 153 EELASALKGVNVVV----IPAG-----VP---RKP-GMTRDDLFNINANIVKTLVEAVAD 199
+L G+N+ + P+G +P RK R F L
Sbjct: 383 ---PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNR---F---------L------ 421
Query: 200 NCPDAFIHIISNPVNS-----TVPIAAEVLKQKGV-YDPKKLFGVTTLDVVRANTFVAQK 253
P +++P +S + + L + V ++ K + + D +
Sbjct: 422 --P------VASPFHSHLLVPASDLINKDLVKNNVSFNAKDI-QIPVYDTFDGSDLRVLS 472
Query: 254 KNL--KLIDVDVPVVGGHAGITILPL----LSKTMPS--VSF---TDEEVGDLTVRIQNA 302
++ +++D I LP+ ++ + + F +G LT R ++
Sbjct: 473 GSISERIVDC----------IIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Query: 303 -GTEVVEA 309
G V+ A
Sbjct: 523 TGVRVIVA 530
Score = 63.5 bits (154), Expect = 7e-11
Identities = 53/284 (18%), Positives = 90/284 (31%), Gaps = 89/284 (31%)
Query: 9 FSITS---------TIAFGPKAGQLPQSKPSGVRFNSKKSLVSFSGLKAVTSVICESNTS 59
FSI TI FG + G+ +R N +S + T V + T
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGK-------RIREN-------YSAMIFETIVDGKLKTE 1704
Query: 60 FLNKESCSALRS-TFARKAQSSE-QRPQYALQPQASFKV-----AVLGAAGGIGQPLALL 112
+ KE S TF +++ Q+ QP A + L + G I
Sbjct: 1705 KIFKEINEHSTSYTF--RSEKGLLSATQFT-QP-ALTLMEKAAFEDLKSKGLI------- 1753
Query: 113 IKMSPLVSAL--H-L--YDVMNVKGVAADLSHCNTPSQVLDFTGPEELASALK------- 160
P + H L Y AA L+ + V+ E L +
Sbjct: 1754 ----PADATFAGHSLGEY--------AA-LASL---ADVMSI---ESLVEVVFYRGMTMQ 1794
Query: 161 --------GVNVVVIPAGVPRK--PGMTRDDLFNINANIVKT---LVEAVADNCPDAFIH 207
G + + A P + +++ L + + K LVE V N +
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQY- 1853
Query: 208 IISNPVNSTVPIAAEVLKQKGV--YDPKKLFGVTTLDVVRANTF 249
+ + + + + VL + D +L +L+ V + F
Sbjct: 1854 VAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 49.7 bits (118), Expect = 2e-06
Identities = 43/246 (17%), Positives = 72/246 (29%), Gaps = 72/246 (29%)
Query: 104 GIGQPLALLIKMSPLVSAL------HLYDVMNVKGVA-ADLSHCNTPSQVLDFTGPEELA 156
G+G L K S + H D G + D+ N + + F G
Sbjct: 1630 GMGMDLY---KTSKAAQDVWNRADNHFKDTY---GFSILDIVINNPVNLTIHFGGE---- 1679
Query: 157 SALKGVNVVVIPAGVPRK--PGMTRD---DLFNINANIVKTLVEAVADNC---PDAFIHI 208
KG + R+ M + D I K + E +
Sbjct: 1680 ---KGKRI--------RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 209 ISN--PVNSTVPIAA-EVLKQKGVYDPKKLF---------------GV----TTLDVV-- 244
P + + AA E LK KG+ F V + ++VV
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 245 RANTFVAQKKNLKLIDVDVPV-VGGHAGITILPLLSKTMPSVSFTDEEVGDLTVRIQNAG 303
R + V VP G + ++ + + + SF+ E + + R+
Sbjct: 1789 RG----------MTMQVAVPRDELGRSNYGMIAINPGRV-AASFSQEALQYVVERVGKRT 1837
Query: 304 TEVVEA 309
+VE
Sbjct: 1838 GWLVEI 1843
Score = 48.1 bits (114), Expect = 4e-06
Identities = 78/474 (16%), Positives = 148/474 (31%), Gaps = 168/474 (35%)
Query: 48 AVTSVICESNTSFLNKESCSALRSTFARKAQSSEQRPQYALQPQASFKVAVLGAA----- 102
A+ + + + N + L K +++ A+ +RP A F+ G A
Sbjct: 103 ALAAKLLQENDTTLVKTK-ELIKNYIT--ARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 103 -GGIG----------------QPL--ALLIKMSPLVSAL---------HLYDVMNVK--- 131
GG G L L+ + +S L +N+
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 132 ----------------------GVAADLSHCNTPSQVLDFTGPEELASALKGVNVV---V 166
GV L+H +++L FT P EL S LKG +
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQ-LAHYVVTAKLLGFT-PGELRSYLKGATGHSQGL 277
Query: 167 IPAGVPRKPGMTRDD-----------LF-------------NINANIVKTLVE------- 195
+ A + + + LF ++ +I++ +E
Sbjct: 278 VTAVAIAE-TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 196 ---AVADNCPDAFI--HI-ISN---PVNSTVPIA------AEVLKQKGVYDPKKLFG-VT 239
++++ + ++ +N P V I+ V+ G P+ L+G
Sbjct: 337 PMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV--SG--PPQSLYGLNL 391
Query: 240 TLDVVRANTFVAQKK----------NLKLIDVDVPVVGGHAGITILPLLSKTMPSVSFTD 289
TL +A + + Q + + + + V P H+ LL + D
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF---HS-----HLLVPASDLI-NKD 442
Query: 290 EEVGDLTVRIQNAGTEVVEAKAGA------GSATLSMAYAAARF-V--ESSLRA-----L 335
+++ ++ V + G+ GS + + R V E++ + L
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 336 D-GDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLTE----YEQ 384
D G G S L L R K G GV +++ L + ++Q
Sbjct: 503 DFGPGGA-------SGLGVL---THRNKDGT-GVRVIVAGTLDINPDDDYGFKQ 545
Score = 39.3 bits (91), Expect = 0.003
Identities = 25/117 (21%), Positives = 37/117 (31%), Gaps = 31/117 (26%)
Query: 299 IQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECVFVESN--LTELPF 356
+ N + G + Y+A F E+ + DG E +F E N T F
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIF-ETIV---DGK-LKTEKIFKEINEHSTSYTF 1719
Query: 357 FASRVKLGRNGVESLISSDLQGLTEYEQKAL--------EALKPELKASIEKGVAFA 405
+ + L T++ Q AL E LK + I FA
Sbjct: 1720 RSEKGLLS--------------ATQFTQPALTLMEKAAFEDLKSK--GLIPADATFA 1760
Score = 34.6 bits (79), Expect = 0.064
Identities = 61/379 (16%), Positives = 114/379 (30%), Gaps = 105/379 (27%)
Query: 86 YALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ 145
A Q Q F +L +P + L V L + ++ +
Sbjct: 29 IASQLQEQF-NKILP------EPTEGFAADDEPTTPAEL--------VGKFLGYVSSLVE 73
Query: 146 VLDFTGPEELASA---------LKGVNVVVIPAGVPRKPGMTRDDLFNI-----NANIVK 191
+++ + L+G ++ + A + ++ T + A I+
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 192 T----------LVEAVAD-------------NCPDAF-----IHIISNP-VNSTVPIAAE 222
L AV + N D F ++ + V + +AE
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE 193
Query: 223 VLKQ--KGVYDPKKLFGVTTLDVVRANTFVAQKKN---LKLIDVDVPVVG----GHAGIT 273
L + + D +K+F L+++ + + L I + P++G H +T
Sbjct: 194 TLSELIRTTLDAEKVFT-QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 274 ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLR 333
LL T P G T Q +V A A A + + F S +
Sbjct: 253 -AKLLGFT-PG-ELRSYLKG-ATGHSQG----LVTAVAIAETDS------WESFFVSVRK 298
Query: 334 ALDGDGDVYECVF---VESNLTELPFFASRVKL------GRNGVESLISSDLQGLTEYE- 383
A+ +F V P + + GV S + S + LT+ +
Sbjct: 299 AI-------TVLFFIGVRCYEA-YPNTSLPPSILEDSLENNEGVPSPMLS-ISNLTQEQV 349
Query: 384 QKALEA----LKPELKASI 398
Q + L + I
Sbjct: 350 QDYVNKTNSHLPAGKQVEI 368
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 1e-08
Identities = 51/378 (13%), Positives = 87/378 (23%), Gaps = 149/378 (39%)
Query: 140 CNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMT--RDDLFNI--NANIV----- 190
PS + E L N V V R R L + N++
Sbjct: 102 QRQPS--MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 191 ---KT-LV-EAVAD-------------------NCPDAFI-------HIISNPVNS---- 215
KT + + N P+ + + I S
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 216 --TVPIAAEVLKQK------------------GVYDPK--KLFG------VTTLDVVRAN 247
+ + ++ + V + K F +TT +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 248 TFVAQKKNLKLIDVDVPVVGGHAGIT---ILPLLSKTMPSVSFTDEEVGDLTVRIQNAGT 304
A + + +T + LL K + D DL
Sbjct: 280 FLSAATT------THISLDHHSMTLTPDEVKSLLLK------YLDCRPQDLP-------- 319
Query: 305 EVVEAKAGAGSATLSMAYAAAR-------------------FVESSLRALDGDGDVYEC- 344
E LS+ + R +ESSL L+ + +
Sbjct: 320 --REVLTTNPRR-LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA-EYRKMF 375
Query: 345 ----VFVES-NLTE------------------LPFFASRVKLGRNGVESLIS-SDLQGLT 380
VF S ++ + + + ES IS +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY--L 433
Query: 381 EYEQKALEALKPELKASI 398
E + K + L SI
Sbjct: 434 ELKVKLEN--EYALHRSI 449
Score = 45.6 bits (107), Expect = 3e-05
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 15/137 (10%)
Query: 282 MPSVSFTDEEVGDLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGD- 340
MP + EE+ I + V + +FVE LR +
Sbjct: 41 MPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI---NYKF 93
Query: 341 VYECVFVESNLTELP---FFASRVKLGRNGVESLISSDLQGLTEYEQ--KALEALKPELK 395
+ + E + + R +L N + ++ L Y + +AL L+P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 396 ASIEKGVAFAQKQAVAA 412
I+ GV + K VA
Sbjct: 153 VLID-GVLGSGKTWVAL 168
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 47.4 bits (112), Expect = 4e-06
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 11/114 (9%)
Query: 95 KVA-VLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA-----ADLSHCNTPSQVLD 148
VA ++G G IG LA + L A V GVA A D
Sbjct: 2 SVALIVGVTGIIGNSLAEI-----LPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCD 56
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCP 202
+ P++ + L + V V T + N+ + + +++AV NCP
Sbjct: 57 ISDPDDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCP 110
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 44.8 bits (105), Expect = 3e-05
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 34/151 (22%)
Query: 93 SFKVAVLGAAGGIGQPLAL--LIKMSPL--VSALHLYDV-----MNVKGVAADLS-HCNT 142
SF + + G G P + L+ + L LYD + G
Sbjct: 28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAP 86
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANI------------- 189
+ T PEE A V+ V+ V + D+ + +
Sbjct: 87 DIEFAATTDPEE---AFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAY 143
Query: 190 -------VKTLVEAVADNCPDAFIHIISNPV 213
V +++ + PDA++ SNP
Sbjct: 144 GMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 43.6 bits (103), Expect = 4e-05
Identities = 13/113 (11%), Positives = 26/113 (23%), Gaps = 18/113 (15%)
Query: 76 KAQSSEQRPQYALQPQASF---KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKG 132
+ V +LGA G I + + ++ L +
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMKNVLILGAGGQIARHV---------INQLADKQTIKQTL 53
Query: 133 V------AADLSHCNTPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTR 179
N+ + D L A++G ++V
Sbjct: 54 FARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQAN 106
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 42.8 bits (101), Expect = 7e-05
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 19/111 (17%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-----DF 149
K+ ++GA+G +G L ++ V V ++ L D
Sbjct: 6 KIVLIGASGFVGSALLNE-----ALNRGF-----EVTAVVRHPEKIKIENEHLKVKKADV 55
Query: 150 TGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN 200
+ +E+ KG + V+ PG D+++ + T+++ V
Sbjct: 56 SSLDEVCEVCKGADAVISAFN----PGWNNPDIYDETIKVYLTIIDGVKKA 102
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 43.5 bits (102), Expect = 9e-05
Identities = 23/153 (15%), Positives = 51/153 (33%), Gaps = 36/153 (23%)
Query: 92 ASFKVAVLGAAGGIGQPLAL---LIKMSPLVSALHLYDV-----MNVKGVAADLSHCNTP 143
K+A +G G G +L L + + LYD+ + + N
Sbjct: 4 DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSG--NGR 60
Query: 144 SQVLDFTGPEELASALKGVNVVVIPAGV------------PRKPGMTRDDLFNINA---- 187
+ + ++ AL ++V+I P + G+ + +
Sbjct: 61 WRYEAVSTLKK---ALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGII 117
Query: 188 ------NIVKTLVEAVADNCPDAFIHIISNPVN 214
I + A+ D P++++ +NP++
Sbjct: 118 RGLRAVPIFAEIARAIRDYAPESWVINYTNPMS 150
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 42.2 bits (99), Expect = 2e-04
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 95 KVAVLGAAGGIGQPLAL-LIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
K+ + G G IG + +K+ + + S + + E
Sbjct: 13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKG-ELDEHE 71
Query: 154 ELASALKGVNVVVIPAGVP 172
+L +K V+VV+ P
Sbjct: 72 KLVELMKKVDVVISALAFP 90
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 40.8 bits (96), Expect = 3e-04
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 23/120 (19%)
Query: 95 KVAVLGAAGGIGQPLA-LLIKMSPLVSAL-----HLYDVMNVKGVAADLSHCNTPSQVLD 148
K+ ++G+ G +G+ L L + A + NVK V D+
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVD---------- 51
Query: 149 FTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
PEE+A L G++ ++ +G K L ++ L++A FI +
Sbjct: 52 -WTPEEMAKQLHGMDAIINVSGSGGK------SLLKVDLYGAVKLMQAAEKAEVKRFILL 104
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 41.1 bits (96), Expect = 4e-04
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 95 KVAVLGAAGGIGQPL--ALLIKMSP---LVSALHLYDVMNVKGVAADLSHCNTPSQVLDF 149
K+ + G G IG+ + A L P L + + + +
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 150 TGPEELASALKGVNVVVIPAGVP 172
E++ S LK V++V+ P
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFP 88
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 41.1 bits (96), Expect = 5e-04
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
KV +LGA G IG+ +A +K V ++ DV N + +D + ++
Sbjct: 18 KVLILGA-GNIGRAIAWDLKDEFDV---YIGDVNNEN---LEKVKEFATPLKVDASNFDK 70
Query: 155 LASALKGVNVVV 166
L +K +V+
Sbjct: 71 LVEVMKEFELVI 82
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 41.3 bits (96), Expect = 5e-04
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 34/151 (22%)
Query: 94 FKVAVLGA----AGGIGQPLALLIKMSPLVSALHLYDVM-------NVKGVAADLSHCNT 142
K+A +G + + L P V L L D+ V +A +
Sbjct: 8 LKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKAG 66
Query: 143 PSQVLDFTGPEELASALKGVNVVVIPAGV------------PRKPGMTRDDLFNI----- 185
++ + AL G + V V P K G+ +
Sbjct: 67 VP--IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFK 124
Query: 186 NANIVKTLVEAVAD---NCPDAFIHIISNPV 213
+ +++ + D CPDA++ +NP
Sbjct: 125 GLRTIPVILDIIRDMEELCPDAWLINFTNPA 155
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 40.4 bits (95), Expect = 5e-04
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 95 KVAVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
+V V+GA G + + L L A+ V N + + ++ E
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVAM----VRNEEQGPELRERGASD--IVVANLEE 76
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
+ + A ++ VV AG G D I+ ++ FI +
Sbjct: 77 DFSHAFASIDAVVFAAGSGPHTG--ADKTILIDLWGAIKTIQEAEKRGIKRFIMV 129
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 39.9 bits (93), Expect = 0.001
Identities = 32/220 (14%), Positives = 66/220 (30%), Gaps = 33/220 (15%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQ--------- 145
+V ++G G IG+ + + +S H V+ V +++
Sbjct: 6 RVLIVGGTGYIGKRIV-----NASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 146 VLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAF 205
+ L ALK V+VV+ + L + A ++ P F
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRF---LPSEF 117
Query: 206 IHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLKLIDVDVPV 265
++ P + + ++ V + + V +N F
Sbjct: 118 GMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYT-YVSSNMF---------AGYFAGS 167
Query: 266 VGGHAGITILPLLSKTMP-----SVSFTDEE-VGDLTVRI 299
+ G + P + + DE+ VG T++
Sbjct: 168 LAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKS 207
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 95 KVAVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPE 153
K+A+ GA G G ++ V+ L V + + ++ V D
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL----VRDSSRLPSEGPRPAHVV-VGDVLQAA 59
Query: 154 ELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAV 197
++ + G + V++ G T + + +V A+
Sbjct: 60 DVDKTVAGQDAVIVLLGTRNDLSPTTVM-----SEGARNIVAAM 98
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 39.8 bits (92), Expect = 0.001
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
V +LG+ G + QP+ + + ++ + + + A + + LD T
Sbjct: 25 NVLLLGS-GFVAQPVIDTLAANDDIN-VTVACR-TLANAQALAKPSGSKAISLDVTDDSA 81
Query: 155 LASALKGVNVVV 166
L L +VV+
Sbjct: 82 LDKVLADNDVVI 93
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 37.9 bits (88), Expect = 0.004
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 95 KVAVLGAAGGIGQPL--ALLIKMSP---LVSALHLYDVMNVKG-VAADLSHCNTPSQVLD 148
K+ +LG G IG+ + A + +P LV K + + D
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 149 FTGPEELASALKGVNVVVIPAG 170
E L A+K V++V+ AG
Sbjct: 64 INDHETLVKAIKQVDIVICAAG 85
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 37.3 bits (86), Expect = 0.004
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 22/142 (15%)
Query: 95 KVAVLGAAGGIGQPLA--LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL--DFT 150
+ +LGAAG I Q L LL ++ +K + V+ F
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLY----GRQLKTRIPPEIIDHERVTVIEGSFQ 62
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
P L A+ VV + A + ++V+A++ I +
Sbjct: 63 NPGXLEQAVTNAEVVFVGAMESGSD--------------MASIVKALSRXNIRRVIGVSM 108
Query: 211 NPVNSTVPIAAEVLKQKGVYDP 232
++ P+A E +
Sbjct: 109 AGLSGEFPVALEKWTFDNLPIS 130
>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na
dependent; HET: G6P NAD; 2.4A {Thermotoga maritima}
SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A
Length = 417
Score = 37.0 bits (85), Expect = 0.009
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 28/145 (19%)
Query: 94 FKVAVLGAAGGIGQPLAL--LIKMSPL--VSALHLYDVM--NVKGVAADLSHCNTPSQVL 147
++AV+G G P + L+ +S + + YD+ K V +
Sbjct: 3 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVK--RLVKDRF 59
Query: 148 DFTGPEELASALKGVNVVVIPAGV------------PRKPGMTRDDLFNI-----NANIV 190
+ A+ V+ P K G+ + +
Sbjct: 60 KVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAF 119
Query: 191 KTLVEAVAD--NCPDAFIHIISNPV 213
+ E V +A I +NP
Sbjct: 120 PIVEEYVDTVRKTSNATIVNFTNPS 144
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 36.4 bits (84), Expect = 0.014
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 19/84 (22%)
Query: 95 KVAVLGAAGGIGQPL------------ALLIKMSPLVSALHLYDVMNVKGVAADLSHCNT 142
++ ++GA G IG+ + L+ + + ++ + + K A++ H
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHG-- 63
Query: 143 PSQVLDFTGPEELASALKGVNVVV 166
L A+K V+VV+
Sbjct: 64 -----SIDDHASLVEAVKNVDVVI 82
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoi oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 36.2 bits (83), Expect = 0.015
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 90 PQASFKVAVLGAAGGIGQPLA-LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL- 147
P +V + GA G IGQ +A + L + + + + ++
Sbjct: 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVY 66
Query: 148 -DFTGPEELASALKGVNVVVI 167
E + LK + ++
Sbjct: 67 GLINEQEAMEKILKEHEIDIV 87
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 36.1 bits (84), Expect = 0.017
Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 14/92 (15%)
Query: 75 RKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA 134
+ ++ + F V ++GA G +G +A ++ A ++ +
Sbjct: 121 QALKNQALWKPLPEYTREEFSVGIMGA-GVLGAKVAESLQ------AWG----FPLRCWS 169
Query: 135 ADLSHCNTPSQVLDFTGPEELASALKGVNVVV 166
+ V + G EEL + L V++
Sbjct: 170 ---RSRKSWPGVESYVGREELRAFLNQTRVLI 198
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.0 bits (81), Expect = 0.027
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 17/121 (14%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSAL--HLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
++ V GAAG +G + L + D + N D
Sbjct: 5 RLLVTGAAGQLG---------RVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADA 55
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKT--LVEAVADNCPDAFIHIIS 210
+ + + G + +V G+ + + + NI+ L EA + + S
Sbjct: 56 NAVNAMVAGCDGIVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS 111
Query: 211 N 211
N
Sbjct: 112 N 112
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 35.2 bits (81), Expect = 0.028
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
V +LGA+G G+ L I L S + L K + ++ N +V+DF
Sbjct: 20 SVFILGASGETGRVLLKEILEQGLFSKVTLI----GRRKLTFDEEAYKNVNQEVVDFEKL 75
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
++ ASA +G +V G R + ++ + V E F +
Sbjct: 76 DDYASAFQGHDVGFCCLGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLL 130
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 34.8 bits (80), Expect = 0.033
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNV--KGVAADLSHCNTPSQVLDFTGP 152
V V GA+G GQ ++ K L + + + + D T
Sbjct: 6 TVLVTGASGRTGQ---IVYKK--LKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 60
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRD 180
+ + A +G++ +VI K D
Sbjct: 61 DSINPAFQGIDALVILTSAVPKMKPGFD 88
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 35.0 bits (81), Expect = 0.033
Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 90 PQASFKVAVLGAAGGIGQPLA-LLIKMSPLVSALHL-------YDVMNVKGVAADLSHCN 141
P A K AVLGA G +G A + + +H + + A++
Sbjct: 10 PGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEM---- 65
Query: 142 TPSQVLDFTGPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNC 201
LD L AL+G++ V+ AG + A
Sbjct: 66 -----LD---HAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQAR 117
Query: 202 PDAFIHI 208
+++
Sbjct: 118 VPRILYV 124
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 33.8 bits (77), Expect = 0.072
Identities = 24/120 (20%), Positives = 33/120 (27%), Gaps = 19/120 (15%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPS----QVLDFT 150
K+AVLGA G G + H V V D L
Sbjct: 2 KIAVLGATGRAGSAIVAE-----ARRRGH-----EVLAVVRDPQKAADRLGATVATLVKE 51
Query: 151 GPEELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
+ L V+ VV VP G + LV + ++ A + S
Sbjct: 52 PLVLTEADLDSVDAVVDALSVPWGSGRGYLH-----LDFATHLVSLLRNSDTLAVFILGS 106
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 33.8 bits (78), Expect = 0.077
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 8/88 (9%)
Query: 95 KVAVLGAAGGIGQPLA--LLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
+ + GA G +G + + V NV+ D + LD+
Sbjct: 2 NIMLTGATGHLGTHITNQAIANHIDHFHIG----VRNVEK-VPDDWRGKVSVRQLDYFNQ 56
Query: 153 EELASALKGVNVV-VIPAGVPRKPGMTR 179
E + A KG++ V IP+ +
Sbjct: 57 ESMVEAFKGMDTVVFIPSIIHPSFKRIP 84
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
2.10A {Burkholderia thailandensis}
Length = 272
Score = 33.7 bits (78), Expect = 0.087
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 22/94 (23%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSP---LVSALHL-------YDVMNVKG------VAADLS 138
K+A+ GA+G +G+ L + +P LV AL D G + D+
Sbjct: 9 KIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIE 68
Query: 139 HCNTPSQVL-DFTGPEELASALK-----GVNVVV 166
+ L DFT PE L V +V+
Sbjct: 69 RVCAEADYLIDFTLPEGTLVHLDAALRHDVKLVI 102
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis,
NADH binding specificity, TB structural genomics
consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium
tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A
1yl7_A* 1yl6_A*
Length = 245
Score = 32.5 bits (75), Expect = 0.16
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 17/81 (20%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSP---LVSALHLYDVMNVKGVAADLSHCNTPSQVL-DFT 150
+V VLGA G +G + + + L + L D + + D ++V+ DFT
Sbjct: 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAEL---DAGDPLSLLTD-----GNTEVVIDFT 53
Query: 151 GPEE----LASALK-GVNVVV 166
P+ L + G++ VV
Sbjct: 54 HPDVVMGNLEFLIDNGIHAVV 74
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold;
HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1
PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Length = 236
Score = 32.7 bits (75), Expect = 0.17
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 10/71 (14%)
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSDLQGLT 380
A + + VE+S D V E V + +PF + K+ L
Sbjct: 154 ALSGLQLVEAS------DAVVVEMVSI----LSIPFLKAAEKIHSTANSRYKDIKFISLL 203
Query: 381 EYEQKALEALK 391
+ E
Sbjct: 204 SDDALTEENCG 214
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A
{Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A*
1dru_A* 1drv_A* 1drw_A*
Length = 273
Score = 32.6 bits (75), Expect = 0.19
Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSP---LVSALHL-------YDVMNVKG-------VAADL 137
+VA+ GA G +G+ L L +AL D + G V + L
Sbjct: 7 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL 66
Query: 138 SHCNTPSQVL-DFTGPEELASALK-----GVNVVV 166
V DFT PE + L G +V+
Sbjct: 67 DAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVI 101
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 32.7 bits (75), Expect = 0.21
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 20/96 (20%)
Query: 74 ARKAQSSEQRPQYALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGV 133
R+ Q + Q + +LG G IGQ +A K M V GV
Sbjct: 121 YREQQKQRLWQSHPYQGLKGRTLLILGT-GSIGQHIAHTGK------HFG----MKVLGV 169
Query: 134 AADLSHCNTPSQVLDFT---GPEELASALKGVNVVV 166
+ + + F L L +V+V
Sbjct: 170 S------RSGRERAGFDQVYQLPALNKMLAQADVIV 199
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode
biostructures, niaid, amino-acid biosynthesis,
cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Length = 288
Score = 31.8 bits (73), Expect = 0.35
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSP---LVSALHL-------YDVMNVKG-------VAADL 137
++ V+GA G +G+ L I+ L + L D + G + D
Sbjct: 23 RLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDP 82
Query: 138 SHCNTPSQVL-DFTGPEELASALK-----GVNVVV 166
+ ++ + DF+ P+ + ++
Sbjct: 83 ESAFSNTEGILDFSQPQASVLYANYAAQKSLIHII 117
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 31.1 bits (71), Expect = 0.61
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 96 VAVLGAAGGIGQPLA--LLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
+AV GA G +G + LL K+ + A+ V NV+ A+ L+ + D+ P
Sbjct: 3 IAVTGATGQLGGLVIQHLLKKVPASQIIAI----VRNVEK-ASTLADQGVEVRHGDYNQP 57
Query: 153 EELASALKGVNVV-VIPAGVPRKPGMTRDDLFNINA 187
E L A GV+ + I + + A
Sbjct: 58 ESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKA 93
>1p0t_A Tumor necrosis factor receptor superfamily member 13C; BAFF,
BLys, stall, BAFF-R, BR-3, protein binding; 3.30A {Homo
sapiens} PDB: 1osx_A
Length = 63
Score = 28.6 bits (63), Expect = 0.67
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 65 SCSALRSTFARKAQSSEQRPQYALQPQAS 93
+C LR+ + A +S P+ ALQPQ S
Sbjct: 34 ACGLLRTPRPKPAGASSPAPRTALQPQES 62
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 30.7 bits (69), Expect = 0.86
Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 28/118 (23%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGPEE 154
+ + GA G +G L + L ++ V T EE
Sbjct: 2 NIVITGAKGFVG---------KNLKADLTSTTDHHIFEV--H-----------RQTKEEE 39
Query: 155 LASALKGVNVVVIPAGVPR--KPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHIIS 210
L SAL + +V AGV R + N + + +++ + N I + S
Sbjct: 40 LESALLKADFIVHLAGVNRPEHD----KEFSLGNVSYLDHVLDILTRNTKKPAILLSS 93
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase,
purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP:
c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Length = 180
Score = 29.8 bits (68), Expect = 0.99
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 10/55 (18%)
Query: 321 AYAAARFVESSLRALDGDGDVYECVFVESNLTELPFFASRVKLGRNGVESLISSD 375
AA + +V ECV L EL R KL SL+ +
Sbjct: 136 MNAACELLGRL------QAEVLECVS----LVELTSLKGREKLAPVPFFSLLQYE 180
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 30.0 bits (68), Expect = 1.00
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 12/116 (10%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVA--ADLSHCNTPSQVLDFTGP 152
+V + GA G G+ L I P ++ V A A H + V
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTLA--------KVIAPARKALAEHPRLDNPVGPLA-- 56
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADNCPDAFIHI 208
E L ++ G K + + ++ ++ + + + ++ +
Sbjct: 57 ELLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVV 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 13/30 (43%)
Query: 383 EQKALEALK-----------PEL--KASIE 399
E++AL+ L+ P L KA++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 30.0 bits (68), Expect = 1.2
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 13/108 (12%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSAL--HLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
++ V GAAGG+G S + L ++V V + + D
Sbjct: 4 RLLVTGAAGGVG---------SAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADA 54
Query: 153 EELASALKGVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVADN 200
+ + +K + ++ GV + +D+ N L EA +
Sbjct: 55 QAVHDLVKDCDGIIHLGGVSVE--RPWNDILQANIIGAYNLYEAARNL 100
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH,
oxidoreductase; 1.80A {Staphylococcus aureus}
Length = 243
Score = 29.5 bits (67), Expect = 1.6
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 7/78 (8%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSP--LVSAL-HLYDVMNVKGVAADLSHCNTPSQVLDFTG 151
K+ ++G G + Q +A L + +V + + ++ +DF+
Sbjct: 5 KILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVKGADVAIDFSN 63
Query: 152 PE---ELASALKGVNVVV 166
P L + +VV
Sbjct: 64 PNLLFPLLDEDFHLPLVV 81
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.8 bits (65), Expect = 3.1
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 96 VAVLGAAGGIGQPLA--LLIKMSPL-VSALHLYDVMNVKGVAADLSHCNTPSQVLDFTGP 152
+A+ GA G +G + L+ + + A+ V N A L+ + D+
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIVAI----VRNPAK-AQALAAQGITVRQADYGDE 56
Query: 153 EELASALKGVNVV-VIPAGVPRKP 175
L SAL+GV + +I + +
Sbjct: 57 AALTSALQGVEKLLLISSSEVGQR 80
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics,
protein structure initiative, PSI, joint center for
structu genomics; HET: NAD PG4; 2.27A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.3
Length = 228
Score = 28.3 bits (64), Expect = 3.4
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 15/78 (19%)
Query: 95 KVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQVL-DFTGPE 153
K ++G +G +GQ + + V V + V+ DF+ PE
Sbjct: 14 KYGIVGYSGRMGQEIQKVFSEKGHEL---------VLKVDVNGVEELDSPDVVIDFSSPE 64
Query: 154 ELASALK-----GVNVVV 166
L + +V+
Sbjct: 65 ALPKTVDLCKKYRAGLVL 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.9 bits (63), Expect = 5.0
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 75 RKAQSSEQRPQYALQPQASFKVAVLGAAG 103
S R Q +A+LG G
Sbjct: 3 HHHHHSSGRENLYFQGPLEVNLAILGRRG 31
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 27.6 bits (62), Expect = 6.5
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 74 ARKAQSSEQRPQYALQPQASFKVAVLGAAG 103
S R Q +K+ V+GA G
Sbjct: 2 HHHHHHSSGRENLYFQGMTEYKLVVVGAGG 31
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan,
membrane-associated proteins; 1.90A {Xanthomonas
campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Length = 406
Score = 27.8 bits (61), Expect = 6.9
Identities = 20/147 (13%), Positives = 40/147 (27%), Gaps = 34/147 (23%)
Query: 87 ALQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSALHLYDVMNVKGVAADLSHCNTPSQV 146
L ++ +G + L +++P +A +Y + LS N S +
Sbjct: 117 QLLDWMRESDVIVFESGIAVAFIELAKRVNP--AAKLVYRASD------GLSTINVASYI 168
Query: 147 LD------------FTGPEELASALKGV-NVVVIPAGV-----------PRKPGMTRDDL 182
+A+ + NV + GV P G+ +
Sbjct: 169 EREFDRVAPTLDVIALVSPAMAAEVVSRDNVFHVGHGVDHNLDQLGDPSPYAEGIHA--V 226
Query: 183 FNINANIVKTLVEAVADNCPDAFIHII 209
+ + P H+I
Sbjct: 227 AVGSMLFDPEFFVVASKAFPQVTFHVI 253
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 27.7 bits (62), Expect = 7.6
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 74 ARKAQSSEQRPQYALQPQASF--KVAVL-GAAGGIGQPLAL 111
++ Q P + F + AV+ G A GIG A
Sbjct: 9 MGTLEAQTQGPGSMDGFLSGFDGRAAVVTGGASGIGLATAT 49
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 27.3 bits (60), Expect = 9.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 95 KVAVLGAAGGIGQPLALLIKMS 116
VA+LGA G +G + I S
Sbjct: 13 TVAILGAGGKMGARITRKIHDS 34
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.357
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,022,045
Number of extensions: 381926
Number of successful extensions: 1436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1310
Number of HSP's successfully gapped: 117
Length of query: 412
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 316
Effective length of database: 4,021,377
Effective search space: 1270755132
Effective search space used: 1270755132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)