Query 015173
Match_columns 412
No_of_seqs 145 out of 853
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:48:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1565 Uncharacterized conser 100.0 7.7E-76 1.7E-80 584.5 24.3 295 85-405 3-307 (370)
2 KOG2901 Uncharacterized conser 100.0 7.7E-70 1.7E-74 532.7 16.2 316 73-407 24-339 (415)
3 PF02636 Methyltransf_28: Puta 100.0 3.2E-59 7E-64 450.6 16.6 245 144-404 1-252 (252)
4 PHA03412 putative methyltransf 97.0 0.0028 6.1E-08 61.7 8.3 69 126-211 28-96 (241)
5 PF05175 MTS: Methyltransferas 96.7 0.013 2.8E-07 53.4 9.6 45 162-213 33-77 (170)
6 TIGR00740 methyltransferase, p 96.6 0.014 3.1E-07 55.6 9.9 48 160-212 53-100 (239)
7 PRK14896 ksgA 16S ribosomal RN 96.3 0.02 4.4E-07 55.8 9.4 43 161-212 30-72 (258)
8 PF00398 RrnaAD: Ribosomal RNA 96.3 0.016 3.4E-07 56.7 8.4 44 160-212 30-73 (262)
9 PF13847 Methyltransf_31: Meth 96.3 0.02 4.2E-07 50.7 8.3 47 161-213 4-50 (152)
10 PRK15451 tRNA cmo(5)U34 methyl 96.0 0.057 1.2E-06 52.1 10.6 47 161-212 57-103 (247)
11 smart00650 rADc Ribosomal RNA 95.9 0.019 4.1E-07 52.0 6.4 49 155-212 8-56 (169)
12 TIGR03587 Pse_Me-ase pseudamin 95.9 0.068 1.5E-06 50.5 10.3 44 161-211 44-87 (204)
13 PRK01683 trans-aconitate 2-met 95.9 0.061 1.3E-06 51.7 10.1 54 151-211 22-75 (258)
14 PF12847 Methyltransf_18: Meth 95.8 0.024 5.3E-07 46.8 6.2 43 162-211 3-45 (112)
15 PF08242 Methyltransf_12: Meth 95.7 0.0025 5.4E-08 52.1 -0.2 41 165-212 1-41 (99)
16 TIGR03438 probable methyltrans 95.7 0.034 7.3E-07 55.5 7.7 45 162-212 65-109 (301)
17 PRK11036 putative S-adenosyl-L 95.6 0.074 1.6E-06 51.4 9.4 53 150-212 35-87 (255)
18 TIGR02752 MenG_heptapren 2-hep 95.6 0.11 2.4E-06 48.9 10.3 59 148-212 33-91 (231)
19 PRK06202 hypothetical protein; 95.5 0.15 3.2E-06 48.5 11.0 49 160-211 60-108 (232)
20 COG0030 KsgA Dimethyladenosine 95.5 0.057 1.2E-06 53.3 8.2 43 161-212 31-73 (259)
21 TIGR02072 BioC biotin biosynth 95.5 0.047 1E-06 50.8 7.4 62 144-212 18-79 (240)
22 PHA03411 putative methyltransf 95.4 0.063 1.4E-06 53.5 8.4 100 84-211 9-108 (279)
23 TIGR02469 CbiT precorrin-6Y C5 95.3 0.048 1E-06 45.4 6.2 51 155-212 14-64 (124)
24 PRK00274 ksgA 16S ribosomal RN 95.3 0.047 1E-06 53.7 7.0 65 125-211 20-84 (272)
25 PRK07580 Mg-protoporphyrin IX 95.3 0.13 2.7E-06 48.3 9.5 56 148-212 51-106 (230)
26 TIGR00755 ksgA dimethyladenosi 95.2 0.05 1.1E-06 52.7 6.9 47 156-211 25-71 (253)
27 PF13649 Methyltransf_25: Meth 95.2 0.034 7.4E-07 45.7 4.8 45 164-212 1-45 (101)
28 TIGR02021 BchM-ChlM magnesium 95.1 0.16 3.5E-06 47.7 9.6 44 160-212 55-98 (219)
29 PRK13944 protein-L-isoaspartat 95.1 0.097 2.1E-06 49.2 8.1 46 162-213 74-119 (205)
30 PRK14103 trans-aconitate 2-met 95.0 0.15 3.2E-06 49.3 9.4 55 148-209 17-71 (255)
31 PRK09328 N5-glutamine S-adenos 95.0 0.17 3.7E-06 48.9 9.9 45 161-212 109-153 (275)
32 PF13679 Methyltransf_32: Meth 94.9 0.16 3.5E-06 44.9 8.6 47 160-209 25-71 (141)
33 KOG1540 Ubiquinone biosynthesi 94.9 0.12 2.7E-06 51.0 8.4 52 157-209 97-148 (296)
34 TIGR03533 L3_gln_methyl protei 94.8 0.3 6.5E-06 48.4 11.3 71 128-212 96-166 (284)
35 PRK11805 N5-glutamine S-adenos 94.7 0.3 6.5E-06 49.1 11.1 44 162-212 135-178 (307)
36 PRK08317 hypothetical protein; 94.6 0.15 3.3E-06 47.2 8.1 52 153-210 12-63 (241)
37 PRK08287 cobalt-precorrin-6Y C 94.6 0.093 2E-06 48.2 6.5 49 157-212 28-76 (187)
38 PRK00121 trmB tRNA (guanine-N( 94.5 0.078 1.7E-06 49.7 5.8 67 134-212 19-85 (202)
39 PLN02244 tocopherol O-methyltr 94.5 0.35 7.6E-06 49.1 11.0 63 141-211 94-161 (340)
40 PRK13942 protein-L-isoaspartat 94.4 0.11 2.5E-06 49.0 6.9 47 161-213 77-123 (212)
41 PTZ00338 dimethyladenosine tra 94.4 0.1 2.2E-06 52.3 6.8 43 161-212 37-79 (294)
42 KOG2361 Predicted methyltransf 94.3 0.62 1.3E-05 45.8 11.7 58 147-209 55-115 (264)
43 TIGR02987 met_A_Alw26 type II 94.2 0.1 2.2E-06 56.0 6.7 83 127-213 2-85 (524)
44 PF05185 PRMT5: PRMT5 arginine 94.2 0.19 4.1E-06 53.3 8.6 65 139-206 164-229 (448)
45 PRK09489 rsmC 16S ribosomal RN 94.1 0.23 5E-06 50.7 8.8 45 162-213 198-242 (342)
46 smart00138 MeTrc Methyltransfe 94.1 1 2.2E-05 44.2 13.0 123 82-210 23-151 (264)
47 PRK00216 ubiE ubiquinone/menaq 93.8 0.23 5E-06 46.3 7.6 46 161-212 52-97 (239)
48 PRK07402 precorrin-6B methylas 93.7 0.17 3.7E-06 46.9 6.5 45 161-212 41-85 (196)
49 PRK00107 gidB 16S rRNA methylt 93.7 0.28 6E-06 45.9 7.9 78 125-212 13-90 (187)
50 TIGR00080 pimt protein-L-isoas 93.7 0.24 5.3E-06 46.6 7.6 47 161-213 78-124 (215)
51 TIGR00536 hemK_fam HemK family 93.7 0.72 1.6E-05 45.5 11.2 44 162-212 116-159 (284)
52 PF13489 Methyltransf_23: Meth 93.7 0.085 1.8E-06 45.9 4.2 39 159-206 21-59 (161)
53 PRK15001 SAM-dependent 23S rib 93.7 0.31 6.7E-06 50.6 8.9 45 162-213 230-274 (378)
54 PRK11088 rrmA 23S rRNA methylt 93.6 0.24 5.2E-06 48.4 7.7 45 162-210 87-131 (272)
55 PRK11705 cyclopropane fatty ac 93.6 0.52 1.1E-05 48.9 10.5 56 148-211 155-210 (383)
56 PRK00377 cbiT cobalt-precorrin 93.6 0.19 4.1E-06 46.7 6.6 53 155-213 35-87 (198)
57 PF13659 Methyltransf_26: Meth 93.6 0.16 3.5E-06 42.3 5.5 44 162-213 2-45 (117)
58 TIGR03534 RF_mod_PrmC protein- 93.5 0.43 9.2E-06 45.2 8.9 44 162-212 89-132 (251)
59 PF02384 N6_Mtase: N-6 DNA Met 93.3 0.12 2.5E-06 51.3 5.0 74 127-211 24-97 (311)
60 TIGR00091 tRNA (guanine-N(7)-) 93.3 0.19 4.2E-06 46.7 6.1 44 162-212 18-61 (194)
61 PF07757 AdoMet_MTase: Predict 93.3 0.12 2.6E-06 44.7 4.3 40 139-178 35-76 (112)
62 COG2813 RsmC 16S RNA G1207 met 93.2 0.74 1.6E-05 46.4 10.4 75 126-213 126-204 (300)
63 COG3963 Phospholipid N-methylt 93.2 0.23 5.1E-06 46.3 6.3 45 161-211 49-93 (194)
64 COG2226 UbiE Methylase involve 93.2 0.66 1.4E-05 45.3 9.8 51 156-213 47-97 (238)
65 TIGR03704 PrmC_rel_meth putati 93.0 0.55 1.2E-05 45.7 8.9 96 103-212 30-131 (251)
66 PTZ00098 phosphoethanolamine N 92.9 0.41 8.9E-06 46.8 8.0 66 129-211 30-95 (263)
67 PRK01544 bifunctional N5-gluta 92.8 0.43 9.3E-06 51.3 8.7 44 162-212 140-183 (506)
68 TIGR00138 gidB 16S rRNA methyl 92.8 0.3 6.6E-06 45.2 6.6 44 162-212 44-87 (181)
69 TIGR01934 MenG_MenH_UbiE ubiqu 92.8 0.41 8.8E-06 44.2 7.4 51 155-211 34-84 (223)
70 PRK10258 biotin biosynthesis p 92.7 0.4 8.6E-06 45.9 7.6 42 161-211 43-84 (251)
71 PRK00312 pcm protein-L-isoaspa 92.4 0.42 9.2E-06 44.7 7.1 66 128-213 57-122 (212)
72 PF05401 NodS: Nodulation prot 92.2 0.57 1.2E-05 44.6 7.7 50 155-213 38-87 (201)
73 PRK05785 hypothetical protein; 92.2 0.42 9.2E-06 45.7 7.0 41 161-209 52-92 (226)
74 PF08241 Methyltransf_11: Meth 92.1 0.29 6.2E-06 38.4 4.8 40 165-212 1-40 (95)
75 PRK00811 spermidine synthase; 92.0 0.41 8.9E-06 47.4 6.8 73 128-212 49-121 (283)
76 COG2518 Pcm Protein-L-isoaspar 91.8 0.47 1E-05 45.5 6.7 69 124-213 48-116 (209)
77 PRK04457 spermidine synthase; 91.7 0.56 1.2E-05 46.0 7.3 45 161-212 67-111 (262)
78 TIGR01983 UbiG ubiquinone bios 91.7 0.6 1.3E-05 43.5 7.2 62 142-212 26-88 (224)
79 PRK11207 tellurite resistance 91.5 0.51 1.1E-05 44.0 6.6 42 162-212 32-73 (197)
80 PF01135 PCMT: Protein-L-isoas 91.4 0.63 1.4E-05 44.4 7.1 48 160-213 72-119 (209)
81 TIGR00537 hemK_rel_arch HemK-r 91.4 0.34 7.4E-06 44.1 5.1 42 162-212 21-62 (179)
82 KOG2904 Predicted methyltransf 91.2 2.1 4.5E-05 43.0 10.6 97 103-211 90-192 (328)
83 cd02440 AdoMet_MTases S-adenos 91.2 0.37 7.9E-06 37.2 4.5 38 163-208 1-38 (107)
84 PLN02233 ubiquinone biosynthes 91.0 0.87 1.9E-05 44.5 7.8 49 157-211 70-118 (261)
85 TIGR00417 speE spermidine synt 90.9 0.67 1.4E-05 45.5 7.0 72 129-212 46-117 (270)
86 PRK13943 protein-L-isoaspartat 90.9 0.63 1.4E-05 47.3 6.9 46 161-212 81-126 (322)
87 COG2263 Predicted RNA methylas 90.6 1.6 3.5E-05 41.4 8.8 44 162-213 47-90 (198)
88 KOG0820 Ribosomal RNA adenine 90.5 0.73 1.6E-05 46.1 6.7 45 160-213 58-102 (315)
89 PF08123 DOT1: Histone methyla 90.4 0.24 5.3E-06 47.1 3.3 67 138-211 20-86 (205)
90 PRK14967 putative methyltransf 90.4 0.98 2.1E-05 42.8 7.4 44 161-212 37-80 (223)
91 PF05206 TRM13: Methyltransfer 90.3 0.63 1.4E-05 46.0 6.1 48 152-201 9-57 (259)
92 PRK11873 arsM arsenite S-adeno 90.2 1.4 3.1E-05 42.7 8.5 46 161-212 78-123 (272)
93 TIGR00477 tehB tellurite resis 90.2 0.81 1.8E-05 42.6 6.5 42 161-211 31-72 (195)
94 PF01209 Ubie_methyltran: ubiE 90.1 0.53 1.2E-05 45.5 5.4 47 161-213 48-94 (233)
95 PRK04266 fibrillarin; Provisio 90.0 1 2.2E-05 43.4 7.2 50 154-210 66-115 (226)
96 PRK12335 tellurite resistance 90.0 1.4 3E-05 43.5 8.4 42 162-212 122-163 (287)
97 PRK14966 unknown domain/N5-glu 89.6 1.7 3.8E-05 45.8 9.0 93 103-212 198-296 (423)
98 PLN02336 phosphoethanolamine N 89.5 2.7 5.8E-05 44.3 10.6 44 160-211 266-309 (475)
99 PLN02585 magnesium protoporphy 89.4 1.3 2.9E-05 44.8 7.8 43 161-212 145-187 (315)
100 COG4106 Tam Trans-aconitate me 89.2 0.9 2E-05 44.1 6.0 88 152-266 22-109 (257)
101 COG2890 HemK Methylase of poly 89.1 1.7 3.7E-05 43.2 8.3 43 163-212 113-155 (280)
102 TIGR03439 methyl_EasF probable 89.1 1.8 3.9E-05 44.0 8.5 49 161-212 77-125 (319)
103 PRK14968 putative methyltransf 89.0 1.4 3E-05 39.6 6.9 42 162-212 25-66 (188)
104 COG4123 Predicted O-methyltran 88.9 0.87 1.9E-05 44.8 5.9 58 142-213 33-90 (248)
105 PF06325 PrmA: Ribosomal prote 88.8 2.2 4.7E-05 43.0 8.7 57 148-213 150-206 (295)
106 COG2519 GCD14 tRNA(1-methylade 88.5 1.2 2.7E-05 43.8 6.6 54 154-213 88-141 (256)
107 PLN02396 hexaprenyldihydroxybe 88.4 1.1 2.4E-05 45.5 6.5 42 161-211 132-173 (322)
108 smart00828 PKS_MT Methyltransf 88.3 0.83 1.8E-05 42.8 5.2 43 163-212 2-44 (224)
109 TIGR01444 fkbM_fam methyltrans 88.1 0.7 1.5E-05 39.9 4.2 43 163-212 1-43 (143)
110 PRK00517 prmA ribosomal protei 88.0 1.4 2.9E-05 42.7 6.6 43 162-212 121-163 (250)
111 TIGR00438 rrmJ cell division p 88.0 0.88 1.9E-05 41.8 5.0 38 160-203 32-69 (188)
112 PRK05134 bifunctional 3-demeth 87.5 2.2 4.8E-05 40.2 7.6 42 161-211 49-90 (233)
113 PF01596 Methyltransf_3: O-met 87.4 1.2 2.6E-05 42.4 5.7 45 163-213 48-92 (205)
114 PLN02490 MPBQ/MSBQ methyltrans 87.3 1.7 3.7E-05 44.6 7.1 44 161-211 114-157 (340)
115 PRK14121 tRNA (guanine-N(7)-)- 86.9 1.6 3.4E-05 45.7 6.6 42 163-211 125-166 (390)
116 PF07021 MetW: Methionine bios 86.7 1.4 3.1E-05 41.7 5.7 35 162-204 15-49 (193)
117 TIGR00406 prmA ribosomal prote 86.5 1.6 3.5E-05 43.3 6.3 43 162-212 161-203 (288)
118 PRK10909 rsmD 16S rRNA m(2)G96 86.4 2.1 4.7E-05 40.4 6.8 43 162-212 55-97 (199)
119 PLN02366 spermidine synthase 86.1 2.7 5.9E-05 42.5 7.7 73 128-212 64-136 (308)
120 PLN02781 Probable caffeoyl-CoA 85.8 2.1 4.5E-05 41.3 6.5 45 163-213 71-115 (234)
121 TIGR00452 methyltransferase, p 85.5 2.8 6.2E-05 42.4 7.5 46 153-206 114-159 (314)
122 KOG4300 Predicted methyltransf 85.3 2.6 5.6E-05 40.8 6.6 67 139-213 51-121 (252)
123 PF00891 Methyltransf_2: O-met 85.0 5.6 0.00012 37.8 9.0 60 133-199 68-132 (241)
124 COG0421 SpeE Spermidine syntha 84.9 2.3 5E-05 42.5 6.5 70 132-213 53-122 (282)
125 PRK13168 rumA 23S rRNA m(5)U19 84.9 2.5 5.3E-05 44.5 7.0 59 142-212 282-340 (443)
126 TIGR02081 metW methionine bios 84.8 1.5 3.3E-05 40.4 4.9 39 162-208 15-53 (194)
127 PF02390 Methyltransf_4: Putat 84.8 2 4.4E-05 40.3 5.7 42 163-211 20-61 (195)
128 PRK01581 speE spermidine synth 84.5 3.3 7.1E-05 43.1 7.5 59 139-209 134-192 (374)
129 PRK11188 rrmJ 23S rRNA methylt 84.4 1.3 2.8E-05 42.0 4.2 35 161-201 52-86 (209)
130 COG0220 Predicted S-adenosylme 84.3 2.3 5E-05 41.2 6.0 37 163-206 51-87 (227)
131 PF08704 GCD14: tRNA methyltra 83.8 3.4 7.5E-05 40.5 7.0 54 154-213 34-87 (247)
132 PRK03522 rumB 23S rRNA methylu 83.7 3.4 7.5E-05 41.4 7.2 42 162-212 175-216 (315)
133 PRK06922 hypothetical protein; 83.6 2.2 4.7E-05 47.5 6.1 43 162-211 420-462 (677)
134 COG2264 PrmA Ribosomal protein 83.5 5 0.00011 40.6 8.2 58 147-213 150-207 (300)
135 PLN02336 phosphoethanolamine N 83.3 2.5 5.4E-05 44.5 6.3 38 162-208 39-76 (475)
136 PF10294 Methyltransf_16: Puta 83.1 3.1 6.7E-05 38.1 6.1 62 143-212 25-89 (173)
137 PTZ00146 fibrillarin; Provisio 83.0 2.6 5.7E-05 42.4 6.0 46 153-204 125-170 (293)
138 PF09243 Rsm22: Mitochondrial 83.0 7.7 0.00017 38.3 9.3 46 161-212 34-79 (274)
139 TIGR02143 trmA_only tRNA (urac 81.7 3.6 7.9E-05 42.1 6.6 41 163-212 200-240 (353)
140 COG2230 Cfa Cyclopropane fatty 81.6 7.3 0.00016 39.1 8.5 65 141-213 53-117 (283)
141 PRK04148 hypothetical protein; 80.6 5.1 0.00011 35.8 6.3 55 144-209 3-57 (134)
142 PF03291 Pox_MCEL: mRNA cappin 80.5 3.2 6.9E-05 42.4 5.7 58 146-211 42-105 (331)
143 PLN02823 spermine synthase 80.4 5.9 0.00013 40.6 7.5 72 129-212 77-148 (336)
144 TIGR02716 C20_methyl_CrtF C-20 79.9 4.8 0.0001 39.9 6.6 44 160-211 149-192 (306)
145 KOG0822 Protein kinase inhibit 79.8 3.8 8.3E-05 44.4 6.1 62 140-204 347-408 (649)
146 PRK05031 tRNA (uracil-5-)-meth 79.8 4.6 0.0001 41.5 6.6 58 142-212 192-249 (362)
147 TIGR00479 rumA 23S rRNA (uraci 78.3 6.3 0.00014 41.2 7.2 42 162-212 294-335 (431)
148 TIGR02085 meth_trns_rumB 23S r 77.9 5.2 0.00011 41.2 6.4 42 162-212 235-276 (374)
149 PF02353 CMAS: Mycolic acid cy 77.2 8.8 0.00019 38.0 7.5 100 142-265 44-143 (273)
150 PRK03612 spermidine synthase; 77.1 3.3 7.1E-05 44.7 4.8 59 139-209 281-339 (521)
151 PLN02476 O-methyltransferase 76.9 6.7 0.00014 39.2 6.5 45 163-213 121-165 (278)
152 PRK15068 tRNA mo(5)U34 methylt 76.6 3.6 7.8E-05 41.6 4.7 36 162-205 124-159 (322)
153 TIGR00095 RNA methyltransferas 74.2 4.7 0.0001 37.6 4.5 43 162-212 51-93 (189)
154 PF12147 Methyltransf_20: Puta 73.7 16 0.00035 37.0 8.3 49 160-213 135-183 (311)
155 TIGR01177 conserved hypothetic 72.3 12 0.00027 37.6 7.3 66 131-212 160-225 (329)
156 KOG2901 Uncharacterized conser 72.2 0.03 6.5E-07 57.0 -11.3 149 101-274 68-228 (415)
157 PRK10901 16S rRNA methyltransf 72.1 10 0.00022 39.8 6.9 45 161-212 245-289 (427)
158 TIGR00478 tly hemolysin TlyA f 72.0 11 0.00024 36.5 6.5 52 146-205 60-113 (228)
159 KOG2811 Uncharacterized conser 71.4 6.8 0.00015 40.8 5.1 36 162-201 184-219 (420)
160 COG0286 HsdM Type I restrictio 70.7 7 0.00015 41.9 5.4 71 128-212 165-235 (489)
161 COG4121 Uncharacterized conser 69.9 3.6 7.8E-05 40.6 2.7 77 127-204 23-107 (252)
162 COG4122 Predicted O-methyltran 68.3 14 0.0003 35.8 6.3 46 162-213 61-106 (219)
163 PRK11727 23S rRNA mA1618 methy 66.2 13 0.00029 37.8 6.0 47 160-213 114-160 (321)
164 PLN03075 nicotianamine synthas 66.0 25 0.00053 35.6 7.8 46 162-212 125-170 (296)
165 COG2242 CobL Precorrin-6B meth 66.0 15 0.00032 34.8 5.8 44 162-212 36-79 (187)
166 PF05219 DREV: DREV methyltran 65.6 11 0.00023 37.6 5.0 105 83-209 22-134 (265)
167 PF01564 Spermine_synth: Sperm 64.4 14 0.00031 35.9 5.6 73 128-212 49-121 (246)
168 PLN02672 methionine S-methyltr 63.9 9.3 0.0002 45.0 4.9 45 162-213 120-164 (1082)
169 KOG3191 Predicted N6-DNA-methy 63.6 26 0.00057 33.4 6.9 48 162-215 45-92 (209)
170 PRK13255 thiopurine S-methyltr 62.9 25 0.00055 33.5 7.0 39 159-206 36-74 (218)
171 PRK00536 speE spermidine synth 62.3 24 0.00051 35.0 6.8 59 140-212 57-115 (262)
172 TIGR00563 rsmB ribosomal RNA s 61.2 21 0.00045 37.4 6.6 44 162-212 240-283 (426)
173 TIGR00308 TRM1 tRNA(guanine-26 60.6 19 0.00042 37.4 6.1 69 139-213 22-91 (374)
174 PRK01544 bifunctional N5-gluta 60.5 12 0.00026 40.4 4.7 33 314-346 452-484 (506)
175 TIGR00446 nop2p NOL1/NOP2/sun 60.4 15 0.00034 35.8 5.1 46 162-213 73-118 (264)
176 PRK04338 N(2),N(2)-dimethylgua 60.3 23 0.00051 36.8 6.7 74 128-213 30-103 (382)
177 PRK14904 16S rRNA methyltransf 59.9 23 0.00049 37.4 6.6 45 162-212 252-296 (445)
178 COG2227 UbiG 2-polyprenyl-3-me 59.6 12 0.00027 36.7 4.2 79 161-266 60-141 (243)
179 PTZ00357 methyltransferase; Pr 59.4 43 0.00093 38.0 8.6 39 161-202 701-739 (1072)
180 PRK14902 16S rRNA methyltransf 58.8 28 0.00061 36.6 7.1 46 162-213 252-297 (444)
181 TIGR03840 TMPT_Se_Te thiopurin 56.3 30 0.00066 32.9 6.2 37 161-206 35-71 (213)
182 KOG2918 Carboxymethyl transfer 54.4 31 0.00067 35.3 6.1 68 133-207 59-129 (335)
183 PLN02589 caffeoyl-CoA O-methyl 53.2 35 0.00076 33.5 6.2 63 137-212 63-125 (247)
184 PRK14903 16S rRNA methyltransf 52.8 38 0.00082 35.7 6.8 45 162-212 239-283 (431)
185 PF14737 DUF4470: Domain of un 52.3 53 0.0011 27.3 6.4 52 157-211 20-73 (100)
186 KOG3924 Putative protein methy 50.6 25 0.00053 37.1 4.9 72 137-212 169-240 (419)
187 KOG1270 Methyltransferases [Co 49.3 18 0.0004 36.1 3.5 40 162-210 91-130 (282)
188 KOG2244 Highly conserved prote 48.8 8.6 0.00019 41.9 1.3 42 103-144 364-416 (786)
189 PF06080 DUF938: Protein of un 48.2 23 0.0005 33.9 3.9 39 163-208 28-66 (204)
190 PRK14901 16S rRNA methyltransf 46.5 56 0.0012 34.3 6.9 45 162-212 254-298 (434)
191 KOG1541 Predicted protein carb 46.0 49 0.0011 32.6 5.8 71 128-209 20-90 (270)
192 KOG1975 mRNA cap methyltransfe 45.9 29 0.00063 35.9 4.4 201 142-396 99-309 (389)
193 COG0802 Predicted ATPase or ki 44.7 30 0.00066 31.6 4.0 53 138-199 11-65 (149)
194 KOG3010 Methyltransferase [Gen 44.5 44 0.00096 33.1 5.3 38 163-209 36-73 (261)
195 PF03848 TehB: Tellurite resis 44.3 72 0.0016 30.2 6.6 41 157-206 27-67 (192)
196 COG4301 Uncharacterized conser 44.0 87 0.0019 31.4 7.2 49 161-212 79-127 (321)
197 KOG2899 Predicted methyltransf 43.5 40 0.00087 33.6 4.8 45 161-212 59-103 (288)
198 KOG0821 Predicted ribosomal RN 42.3 25 0.00054 34.6 3.2 42 155-204 45-86 (326)
199 COG1331 Highly conserved prote 41.9 19 0.00042 40.1 2.7 42 102-143 300-345 (667)
200 PF03514 GRAS: GRAS domain fam 40.7 75 0.0016 32.9 6.7 58 140-199 92-149 (374)
201 PF05891 Methyltransf_PK: AdoM 40.6 32 0.00069 33.4 3.6 46 160-213 55-100 (218)
202 PRK15128 23S rRNA m(5)C1962 me 39.3 46 0.001 34.8 4.9 43 162-212 222-264 (396)
203 COG4076 Predicted RNA methylas 38.3 79 0.0017 30.5 5.8 64 129-212 12-75 (252)
204 COG5459 Predicted rRNA methyla 38.0 14 0.0003 38.6 0.8 41 162-208 115-155 (484)
205 KOG2915 tRNA(1-methyladenosine 37.9 88 0.0019 31.7 6.3 49 155-209 100-148 (314)
206 PRK13256 thiopurine S-methyltr 36.8 1.2E+02 0.0026 29.4 7.0 48 153-209 36-83 (226)
207 PRK11783 rlmL 23S rRNA m(2)G24 36.8 48 0.001 37.3 4.9 44 162-213 540-583 (702)
208 PRK01747 mnmC bifunctional tRN 35.9 1.1E+02 0.0024 33.9 7.5 69 141-210 34-112 (662)
209 PF08003 Methyltransf_9: Prote 34.5 45 0.00098 34.0 3.8 35 161-203 116-150 (315)
210 PF05050 Methyltransf_21: Meth 34.4 77 0.0017 27.3 4.9 40 166-210 1-42 (167)
211 COG4976 Predicted methyltransf 34.2 52 0.0011 32.6 4.0 39 162-209 127-165 (287)
212 KOG1271 Methyltransferases [Ge 34.1 56 0.0012 31.4 4.0 39 163-208 70-108 (227)
213 PF03602 Cons_hypoth95: Conser 32.8 66 0.0014 29.9 4.4 68 132-213 20-87 (183)
214 PF01170 UPF0020: Putative RNA 32.2 2.5E+02 0.0054 25.8 8.1 51 162-213 30-83 (179)
215 COG0500 SmtA SAM-dependent met 31.5 1E+02 0.0022 24.0 4.8 39 164-209 52-90 (257)
216 PRK00050 16S rRNA m(4)C1402 me 31.3 1.7E+02 0.0036 29.6 7.2 45 162-212 21-65 (296)
217 PF11784 DUF3320: Protein of u 31.0 83 0.0018 23.4 3.8 33 78-111 5-37 (52)
218 PLN02668 indole-3-acetate carb 30.9 1.2E+02 0.0025 32.0 6.2 47 137-183 36-90 (386)
219 KOG1774 Small nuclear ribonucl 30.3 32 0.0007 28.3 1.6 35 100-134 43-82 (88)
220 PTZ00387 epsilon tubulin; Prov 29.4 2.2E+02 0.0047 30.6 8.1 62 126-187 97-162 (465)
221 KOG2651 rRNA adenine N-6-methy 29.3 1.5E+02 0.0033 31.4 6.6 41 156-207 152-192 (476)
222 PF05148 Methyltransf_8: Hypot 29.0 52 0.0011 31.9 3.0 22 157-178 69-90 (219)
223 KOG3987 Uncharacterized conser 28.5 27 0.00059 34.1 1.0 63 125-208 85-151 (288)
224 PF01402 RHH_1: Ribbon-helix-h 26.5 98 0.0021 20.8 3.3 27 84-112 8-34 (39)
225 COG4262 Predicted spermidine s 26.3 1.1E+02 0.0023 32.4 4.9 41 162-209 291-331 (508)
226 PF01269 Fibrillarin: Fibrilla 25.6 1.8E+02 0.0038 28.6 6.0 37 161-203 74-110 (229)
227 COG3897 Predicted methyltransf 25.4 57 0.0012 31.5 2.6 28 142-175 64-94 (218)
228 PRK11783 rlmL 23S rRNA m(2)G24 24.6 2.2E+02 0.0048 32.1 7.4 69 142-213 174-278 (702)
229 COG3876 Uncharacterized protei 23.8 24 0.00051 36.2 -0.3 73 109-183 75-150 (409)
230 PF06764 DUF1223: Protein of u 23.3 1.9E+02 0.004 27.7 5.7 61 322-404 12-73 (202)
231 COG1217 TypA Predicted membran 23.2 37 0.0008 36.8 1.0 57 121-182 314-372 (603)
232 PF05724 TPMT: Thiopurine S-me 23.0 2E+02 0.0044 27.5 5.9 49 150-207 27-75 (218)
233 TIGR03834 EAGR_box EAGR box. T 22.9 58 0.0012 21.6 1.4 9 113-121 3-11 (28)
234 KOG2940 Predicted methyltransf 22.2 1.9E+02 0.004 28.9 5.4 62 139-209 52-113 (325)
235 KOG1661 Protein-L-isoaspartate 21.6 1.8E+02 0.0039 28.5 5.1 47 162-213 84-130 (237)
236 KOG3178 Hydroxyindole-O-methyl 21.5 2.1E+02 0.0046 29.7 6.0 78 125-211 135-219 (342)
237 COG1486 CelF Alpha-galactosida 20.9 3E+02 0.0065 29.6 7.1 82 161-256 3-84 (442)
238 PF05958 tRNA_U5-meth_tr: tRNA 20.2 1.7E+02 0.0036 30.0 5.0 41 163-212 199-239 (352)
No 1
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.7e-76 Score=584.49 Aligned_cols=295 Identities=35% Similarity=0.574 Sum_probs=253.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEE
Q 015173 85 ELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNL 164 (412)
Q Consensus 85 ~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~I 164 (412)
.+..+|+..|+.. |||||++||++|||+|++|||+++.+||+.||||||||||++|||+||.||.++|++.|.|.++.|
T Consensus 3 ~~~~~~~~~i~~~-g~i~f~~fM~~~L~~p~~GYYs~~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~l 81 (370)
T COG1565 3 LLALIIRALIAQG-GPISFSDFMELALYDPEHGYYSSAVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKL 81 (370)
T ss_pred cHHHHHHHHHhcC-CCccHHHHHHHHHcCCCCcccccchhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 4677888888887 999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred EEEcCCcchhHHHHHHHHh-cCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeeccccc
Q 015173 165 VELGPGRGTLMADLLRGAS-KFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHAALE 243 (412)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~-~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~~l~ 243 (412)
||||||+|+||+|||++++ ..|++|+.++|+|||+||.||++||++|+... ..+.|++.++
T Consensus 82 vEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~------------------~~~~~~~~~e 143 (370)
T COG1565 82 VEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE------------------DLIRWVEWVE 143 (370)
T ss_pred EEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc------------------cchhHHHHHH
Confidence 9999999999999999995 68999999999999999999999999997632 2688888889
Q ss_pred cCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcccCCCCcEEEEe
Q 015173 244 QVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADKELEKLEHIEVC 323 (412)
Q Consensus 244 ~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~~~~~~l~~~~~~~~~~~~~~g~~~Ei~ 323 (412)
++|.++++||++|||||||||++|.++++.|+|.+|.-+.++++.|. .+. ... +...+..+......+|+.+|++
T Consensus 144 ~~p~~~~~i~~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~-~~~-~~~---~~~~ll~l~~~~~~~g~~~E~~ 218 (370)
T COG1565 144 DLPKKFPGIVVSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFS-HAI-NEL---IDEALLPLDAPEAEDGYILEVS 218 (370)
T ss_pred hccccCceEEEechhhccccceeEeccCceEEEEeeccCcccceeec-ccc-ccc---hhhhccCcccccccCCceeeeC
Confidence 99998899999999999999999999999999999964445556553 111 111 1111111112346789999999
Q ss_pred hhHHHHHHHHHHHhccCCcEEEEEeCCCCCC--------CCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHHHHh
Q 015173 324 AKAMELTGAMAKRIGSDGGGALIIDYGLNGV--------VTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA 395 (412)
Q Consensus 324 p~a~~~l~~la~~l~~~~G~~LiIDYG~~~~--------~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~~~~ 395 (412)
|++..|++.||+++++ |++|+||||++.. .+.|++.|++|.++|||.+||++||||||||++|+.++++.
T Consensus 219 ~a~~~~l~~ia~~L~~--G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~ 296 (370)
T COG1565 219 PAREALLKAIAERLER--GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAA 296 (370)
T ss_pred HHHHHHHHHHHHHHhh--CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHc
Confidence 9999999999999999 9999999999542 23455566788889999999999999999999999999998
Q ss_pred -ccccCCCccc
Q 015173 396 -SELNHYSRTA 405 (412)
Q Consensus 396 -~~~~~~~~~~ 405 (412)
.+.++|.+|+
T Consensus 297 g~~~~~~~tQ~ 307 (370)
T COG1565 297 GLEVLGFKTQG 307 (370)
T ss_pred CCcccchhhHH
Confidence 5555566554
No 2
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.7e-70 Score=532.70 Aligned_cols=316 Identities=62% Similarity=1.048 Sum_probs=285.6
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHH
Q 015173 73 PPEHSHERKLESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCL 152 (412)
Q Consensus 73 ~p~~~~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~ 152 (412)
||.++++ +..-|.++|...|+.+ ||||+++||..||.||.+|||+.+++||++||||||||++|+|||||++|.+..
T Consensus 24 p~~~sp~--~t~~l~k~L~~ki~~s-gpi~vaeym~evLtnp~~gyy~~rdvfg~~gdfitSpeisq~fgeligvw~~~e 100 (415)
T KOG2901|consen 24 PPDHSPE--ETPHLVKHLKSKIKST-GPITVAEYMKEVLTNPKAGYYMNRDVFGAKGDFITSPEISQIFGEMIGVWTVSE 100 (415)
T ss_pred CCCCCcc--ccHHHHHHHHhhhhcc-CCccHHHHHHHHHhCcccceeccHHHhhcccCccCCccHHHHHHHhhheeEEEe
Confidence 3344444 3334999999999999 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCC
Q 015173 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLA 232 (412)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~ 232 (412)
|.++|.|..+++||+||||||||.|+|+.+.++. -..+++||||.||.|.+.|.++|.+....... +.+.++..
T Consensus 101 w~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~--~~~vs~hLve~S~~ls~lq~~~l~~~~~~~s~----~~~~tt~s 174 (415)
T KOG2901|consen 101 WEQMGRPERFQLVELGPGRGTLMADVLRVLTKFK--DEDLSVHLVEVSPALSKLQAQNLCCTDESLSE----YKKGSTLS 174 (415)
T ss_pred hhhhCCccceeEEEeccchhHHHHHHHHHHHHhc--CceeeEEEEEecHhHHHHhhcceeEeeccHHH----Hhhccccc
Confidence 9999999999999999999999999999998765 34578999999999999999999887655444 77788889
Q ss_pred CCceeeccccccCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCChhhHHHHHHhhhhhcc
Q 015173 233 GTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPTPATLFLLQRCKWAADK 312 (412)
Q Consensus 233 ~~~v~W~~~l~~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~~~~~~l~~~~~~~~~~ 312 (412)
+.++.|+.+++++|.++ .+|+|||||||||||+|++..++|+|++|++.+++.|+|+++|.++++..++.. .
T Consensus 175 g~~~~w~~sl~dvp~g~-s~iiahef~DalpVhkfqk~~~~w~eV~vd~~~d~~~rfvls~s~tp~~~~~~~-------~ 246 (415)
T KOG2901|consen 175 GTPIHWHRTLQDVPSGF-TLIIAHEFFDALPVHQFQKSTRGWCEVMVDVGEDSKFRFVLSPSPTPAALYLMP-------A 246 (415)
T ss_pred cCchhcccChhhcCCce-EEEEhHHhhhcCcchhhccCCCCcceeEEeccCcccEEEecCCCCChhhhcCCC-------C
Confidence 99999999999999996 999999999999999999999999999999999999999999999997654422 1
Q ss_pred cCCCCcEEEEehhHHHHHHHHHHHhccCCcEEEEEeCCCCCCCCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHH
Q 015173 313 ELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSA 392 (412)
Q Consensus 313 ~~~~g~~~Ei~p~a~~~l~~la~~l~~~~G~~LiIDYG~~~~~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~ 392 (412)
........|.||++..-+..++++|...+|++|+||||+.+...+|+|||++|+++|+|+.||.+||||+|||+.|+++|
T Consensus 247 ~~e~r~~~e~~~es~~~v~~~~~ri~~~gG~Alivdygh~g~~TDtFRaf~~HKlhDvL~~pg~adLtadVdf~~~~~~a 326 (415)
T KOG2901|consen 247 TDETREKMEHSPESGKSVDLLAKRIGSDGGGALIIDYGHDGIKTDSFRAFKKHKLVDILDMPGSADLTADVDFTYLRHAA 326 (415)
T ss_pred CccchhheeecccccccHHHHHHHHhccCCeEEEEeccCCCccchHHHHhhhccchhhccCCCcccceeecchHHHHHhh
Confidence 22345678899988888888999999999999999999999889999999999999999999999999999999999999
Q ss_pred HHhccccCCCccccc
Q 015173 393 EEASELNHYSRTAQK 407 (412)
Q Consensus 393 ~~~~~~~~~~~~~~~ 407 (412)
+ +...++||..|.
T Consensus 327 ~--~~v~~~gp~~q~ 339 (415)
T KOG2901|consen 327 E--GNVDKNGPRKQH 339 (415)
T ss_pred c--cceeecCchhhh
Confidence 8 789999998774
No 3
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=100.00 E-value=3.2e-59 Score=450.62 Aligned_cols=245 Identities=39% Similarity=0.685 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHcCCCC-CcEEEEEcCCcchhHHHHHHHHhcC-cCccccceEEEEecChhhHHHHHhhcccccccCcCC
Q 015173 144 MVGVWAMCLWEQMGQPN-RVNLVELGPGRGTLMADLLRGASKF-KNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (412)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~-~l~IvEiGaG~GtLa~DIL~~l~~~-p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~ 221 (412)
|||+|++..|+++|.|. +++|||+|||+|+||+|||+++++. |+++++++|+|||+||.||++|+++|.....+
T Consensus 1 ~ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~---- 76 (252)
T PF02636_consen 1 LIARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPK---- 76 (252)
T ss_dssp HHHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH-------
T ss_pred ChHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhccc----
Confidence 79999999999999997 4999999999999999999999865 99999999999999999999999999753211
Q ss_pred cccceeeccCCCCceeeccccccCCCCCCEEEEeeeccccccccEEEecCCeeEEEEEEEc--CCCceEEEeCCCCChhh
Q 015173 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQFQKTTRGWCEKLVDIA--EDSSFRFVLSPQPTPAT 299 (412)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~~l~~lp~~~~~~iiANEffDALPv~~f~~~~~~w~E~~V~~~--~~~~f~~~~~p~~~~~~ 299 (412)
....+.+|.|+++++++| .+|||||||||||||||+|++++++|+|++|+++ .+++|+|+.+|.+++..
T Consensus 77 -------~~~~~~~i~w~~~l~~~p--~~~~iiaNE~~DAlP~~~~~~~~~~w~E~~V~~~~~~~~~~~~~~~p~~~~~~ 147 (252)
T PF02636_consen 77 -------DTEFGDPIRWLDDLEEVP--FPGFIIANELFDALPVDRFRKQEGGWRERYVDIDEEKNGRFCFVLSPLSTPSL 147 (252)
T ss_dssp -------STTTCGCEEEESSGGCS---CCEEEEEESSGGGS--EEEEEETTEEEEEEEEE---TTS-EEEEEESSSSTCH
T ss_pred -------ccccCCccchhhhhhccc--CCEEEEEeeehhcCceeEEEEcCCeEEEEEEEeccccCCceEEEeCCCCCHHH
Confidence 123456899999888887 4899999999999999999999999999999997 46789999988888653
Q ss_pred H-HHHHHhhhhhcccCCCCcEEEEehhHHHHHHHHHHHhccCCcEEEEEeCCCCC-CCCCchhhhccCccC-CCCCCCCC
Q 015173 300 L-FLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIGSDGGGALIIDYGLNG-VVTDSLQAIRKHKFV-DLFDNPGS 376 (412)
Q Consensus 300 ~-~l~~~~~~~~~~~~~~g~~~Ei~p~a~~~l~~la~~l~~~~G~~LiIDYG~~~-~~~gTLr~yr~H~~~-dpl~~PG~ 376 (412)
. ++......+ ...++|+++|||+++..|++.|++++.+ +|++|+||||++. ..+||||||++|+.+ |||.+||+
T Consensus 148 ~~~l~~~~~~~--~~~~~g~~~Ei~~~~~~~l~~l~~~~~~-~g~~l~iDYG~~~~~~~~tLr~~~~H~~~~~~l~~pG~ 224 (252)
T PF02636_consen 148 EEYLPQLGPRL--PKLPEGYRIEIPTGALQWLEQLAERLPK-GGALLIIDYGYPAEENNGTLRAYYKHRVVDDPLENPGE 224 (252)
T ss_dssp CCCTTCCGGG-------TT-EEEE-HCHHHHHHHHHHHCCC--EEEEEEEEEESCHHTT-S-EEESSSSEES-TTSSTTS
T ss_pred HHHHHHhhHhh--ccCCCCCEEEECHHHHHHHHHHHHHHhh-CCEEEEEeCCCCCCCcCCCEEEEeCCcccCChhhCCCc
Confidence 3 332211111 0134799999999999999999999998 7999999999943 589999999999987 99999999
Q ss_pred cccccccCHHHHHHHHHHhccccCCCcc
Q 015173 377 ADLSAYVDFASISHSAEEASELNHYSRT 404 (412)
Q Consensus 377 ~DITahVDFt~L~~~~~~~~~~~~~~~~ 404 (412)
+||||||||++|++++++..++..+|+|
T Consensus 225 ~DITa~VdF~~L~~~~~~~~g~~~~g~~ 252 (252)
T PF02636_consen 225 QDITAHVDFSALKRAAREASGLEVLGPV 252 (252)
T ss_dssp SEEE--EEHHHHHHHHHHCTT-EEEEEE
T ss_pred ccCchhccHHHHHHHHHhccCCEEeCCC
Confidence 9999999999999999888778888875
No 4
>PHA03412 putative methyltransferase; Provisional
Probab=96.99 E-value=0.0028 Score=61.69 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=49.8
Q ss_pred CCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 015173 126 GAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (412)
Q Consensus 126 G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (412)
.+.|.|+|+++|...+ + +|.. . ..+|+|+|||+|.|+..+.+.....+ ..+++.||+++...+
T Consensus 28 ~~~GqFfTP~~iAr~~----~-----i~~~-~---~grVLDlG~GSG~Lalala~~~~~~~----~~~V~aVEID~~Al~ 90 (241)
T PHA03412 28 SELGAFFTPIGLARDF----T-----IDAC-T---SGSVVDLCAGIGGLSFAMVHMMMYAK----PREIVCVELNHTYYK 90 (241)
T ss_pred ccCCccCCCHHHHHHH----H-----Hhcc-C---CCEEEEccChHHHHHHHHHHhcccCC----CcEEEEEECCHHHHH
Confidence 4679999999976543 1 2211 2 24999999999999999877643222 348999999999887
Q ss_pred HHHhhc
Q 015173 206 LQHHNL 211 (412)
Q Consensus 206 ~Qk~~L 211 (412)
.-++++
T Consensus 91 ~Ar~n~ 96 (241)
T PHA03412 91 LGKRIV 96 (241)
T ss_pred HHHhhc
Confidence 766544
No 5
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.65 E-value=0.013 Score=53.37 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=36.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||+|.++.-+.+. .| ..+++.+|+|+...+..++++..
T Consensus 33 ~~vLDlG~G~G~i~~~la~~---~~----~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 33 GRVLDLGCGSGVISLALAKR---GP----DAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp CEEEEETSTTSHHHHHHHHT---ST----CEEEEEEESBHHHHHHHHHHHHH
T ss_pred CeEEEecCChHHHHHHHHHh---CC----CCEEEEEcCCHHHHHHHHHHHHh
Confidence 48999999999999877643 33 33699999999999988887764
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.59 E-value=0.014 Score=55.62 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
...+|+|+|||+|.++..+++.+. .| ..+++-||+|+.+.+.-++++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~-~p----~~~v~gvD~s~~ml~~a~~~~~ 100 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNIN-QP----NVKIIGIDNSQPMVERCRQHIA 100 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHH
Confidence 345899999999999988876542 12 3489999999999988777764
No 7
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=96.34 E-value=0.02 Score=55.75 Aligned_cols=43 Identities=26% Similarity=0.494 Sum_probs=36.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||.|.|+..+++.. .+++.||+++.+.+..++++.
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~---------~~v~~vEid~~~~~~l~~~~~ 72 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRA---------KKVYAIELDPRLAEFLRDDEI 72 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhC---------CEEEEEECCHHHHHHHHHHhc
Confidence 3589999999999999987641 268999999999998887764
No 8
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.31 E-value=0.016 Score=56.68 Aligned_cols=44 Identities=30% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
....|+|+|||.|.|...+++..+ +++.||+.+.+.+.-++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~---------~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGK---------RVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSS---------EEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhcccC---------cceeecCcHhHHHHHHHHhh
Confidence 457999999999999999987751 69999999999988877664
No 9
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.31 E-value=0.02 Score=50.75 Aligned_cols=47 Identities=21% Similarity=0.285 Sum_probs=36.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..+|+|+|||+|.++..+++.+ .| ..+|+.||+|+.+-+.-+++++.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~--~~----~~~i~gvD~s~~~i~~a~~~~~~ 50 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKEL--NP----GAKIIGVDISEEMIEYAKKRAKE 50 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHS--TT----TSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCEEEEecCcCcHHHHHHHHhc--CC----CCEEEEEECcHHHHHHhhccccc
Confidence 4699999999999999987622 22 34799999999999888876643
No 10
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=96.02 E-value=0.057 Score=52.13 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=37.0
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+|+|||+|.++..+++.+. .| ..+++.||+||.+.+.-++++.
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~-~~----~~~v~gvD~S~~ml~~A~~~~~ 103 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIH-HD----NCKIIAIDNSPAMIERCRRHID 103 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcC-CC----CCeEEEEeCCHHHHHHHHHHHH
Confidence 35899999999999888766432 12 3489999999999988777764
No 11
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.91 E-value=0.019 Score=52.04 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=38.3
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+....-+|+|+|||.|.++..+++. ..+++.||+++.+.+.-++++.
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~---------~~~v~~vE~~~~~~~~~~~~~~ 56 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER---------AARVTAIEIDPRLAPRLREKFA 56 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc---------CCeEEEEECCHHHHHHHHHHhc
Confidence 344444458999999999999998764 1269999999999888777664
No 12
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=95.90 E-value=0.068 Score=50.46 Aligned_cols=44 Identities=27% Similarity=0.195 Sum_probs=34.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.-+|+|+|||+|.+...+.+.+ | ..+++-||+|+.+.+.-++++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~---~----~~~v~giDiS~~~l~~A~~~~ 87 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLL---P----FKHIYGVEINEYAVEKAKAYL 87 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhC---C----CCeEEEEECCHHHHHHHHhhC
Confidence 3489999999999888876542 2 237999999999988877654
No 13
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=95.88 E-value=0.061 Score=51.68 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=39.0
Q ss_pred HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 151 CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 151 ~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+...++.....+|+|+|||+|.++..+.+. .|. .+++-||+|+.+.+.-++++
T Consensus 22 ~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~----~~v~gvD~s~~~i~~a~~~~ 75 (258)
T PRK01683 22 DLLARVPLENPRYVVDLGCGPGNSTELLVER---WPA----ARITGIDSSPAMLAEARSRL 75 (258)
T ss_pred HHHhhCCCcCCCEEEEEcccCCHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHHhC
Confidence 3344444444569999999999998877554 232 37999999999887766654
No 14
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=95.83 E-value=0.024 Score=46.80 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=36.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
-+|+|+|||+|.++..+++.. |. .+++-||+||.+.+.-++++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~---~~----~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLF---PG----ARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHH---TT----SEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcC---CC----CEEEEEeCCHHHHHHHHHHH
Confidence 489999999999999988732 22 37999999999998888877
No 15
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=95.73 E-value=0.0025 Score=52.11 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=30.6
Q ss_pred EEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+|+|||+|.++..+++.+ ...+|+.+|+||.+-+.-++++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~l~~a~~~~~ 41 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSMLERARERLA 41 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSSTTSTTCCCHH
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhh
Confidence 699999999999998875 33489999999998754444443
No 16
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.69 E-value=0.034 Score=55.46 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=36.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|||+|||+|+.+.-+++.+.. ..+|+-||+|+.+-+.-+++|.
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~mL~~a~~~l~ 109 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQ------PARYVPIDISADALKESAAALA 109 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHHHHHHHHHHHH
Confidence 58999999999999999988643 2479999999998666555554
No 17
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.58 E-value=0.074 Score=51.40 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=38.8
Q ss_pred HHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 150 ~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+++.++ +.+.+|+|+|||+|.++..+.+. ..+++.||+|+.+.+.-++++.
T Consensus 35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~---------g~~v~~vD~s~~~l~~a~~~~~ 87 (255)
T PRK11036 35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL---------GHQVILCDLSAEMIQRAKQAAE 87 (255)
T ss_pred HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc---------CCEEEEEECCHHHHHHHHHHHH
Confidence 34444444 34469999999999988777542 1379999999999888776654
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=95.56 E-value=0.11 Score=48.92 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 148 ~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
|...+.+.+.....-+|+|+|||+|.++..+.+.+. ...+++-||+|+.+.+.-++++.
T Consensus 33 ~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~------~~~~v~gvD~s~~~~~~a~~~~~ 91 (231)
T TIGR02752 33 WRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVG------PEGHVIGLDFSENMLSVGRQKVK 91 (231)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHH
Confidence 333344445544446999999999999988876542 12379999999998877666653
No 19
>PRK06202 hypothetical protein; Provisional
Probab=95.49 E-value=0.15 Score=48.46 Aligned_cols=49 Identities=24% Similarity=0.357 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
...+|+|+|||+|.++.-+.+..++. ....+++.||+||.+.+.-+++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~---g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRD---GLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhC---CCCcEEEEEcCCHHHHHHHHhcc
Confidence 34699999999999998887766532 11247999999999988766654
No 20
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.47 E-value=0.057 Score=53.27 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=37.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|||||.|.|..-+++... +++-||+.+.|.+.-++++.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~---------~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAA---------RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcC---------eEEEEEeCHHHHHHHHHhcc
Confidence 46999999999999999987542 58999999999999888774
No 21
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=95.46 E-value=0.047 Score=50.81 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.++..+.+.+.......+.+|+|+|||+|.+...+++.. | ..+|+.+|+|+.+.+..++++.
T Consensus 18 ~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~---~----~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 18 EMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF---P----QAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred HHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC---C----CCcEEEEeChHHHHHHHHHhcC
Confidence 445555555554432334689999999999888776543 2 2369999999999877776653
No 22
>PHA03411 putative methyltransferase; Provisional
Probab=95.43 E-value=0.063 Score=53.47 Aligned_cols=100 Identities=23% Similarity=0.335 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcE
Q 015173 84 SELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVN 163 (412)
Q Consensus 84 ~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~ 163 (412)
..|-+.+-..|... .+++-.+ .+-.|+ .|+... ++..|-|+|+..|-..| ++ . ..+ .-+
T Consensus 9 ~~l~~~~~~l~~~~-~~~~~~~--~~~v~~----~~~g~~-~~~~G~FfTP~~i~~~f--~~-------~---~~~-~gr 67 (279)
T PHA03411 9 QKLHDRVMELINSD-RPLTYEE--KEFCYN----NYHGDG-LGGSGAFFTPEGLAWDF--TI-------D---AHC-TGK 67 (279)
T ss_pred HHHHHHHHHHHhCC-cccccCc--HHHHHH----hccccc-ccCceeEcCCHHHHHHH--Hh-------c---ccc-CCe
Confidence 34555555556554 4343331 222222 344333 66789999999995443 11 1 111 238
Q ss_pred EEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
|+|+|||+|.+...+++.. + ..+++.||+||.+.+.-++++
T Consensus 68 VLDLGcGsGilsl~la~r~---~----~~~V~gVDisp~al~~Ar~n~ 108 (279)
T PHA03411 68 VLDLCAGIGRLSFCMLHRC---K----PEKIVCVELNPEFARIGKRLL 108 (279)
T ss_pred EEEcCCCCCHHHHHHHHhC---C----CCEEEEEECCHHHHHHHHHhC
Confidence 9999999999887765532 1 237999999999988777654
No 23
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=95.31 E-value=0.048 Score=45.45 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=38.2
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.++.+..-+|+|+|||.|.++..+++.. |. .+++.||.|+.+.+.-++++.
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~---~~----~~v~~vD~s~~~~~~a~~~~~ 64 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV---PN----GRVYAIERNPEALRLIERNAR 64 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC---CC----ceEEEEcCCHHHHHHHHHHHH
Confidence 3444434599999999999999987653 32 479999999998877665553
No 24
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.29 E-value=0.047 Score=53.67 Aligned_cols=65 Identities=25% Similarity=0.408 Sum_probs=45.8
Q ss_pred CCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 125 ~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
+|. .|.+.+++- .++++ ..+.....+|+|+|||+|.++.-+++.. + +++.||+++.+.
T Consensus 20 ~gq--~fl~~~~i~--------~~i~~---~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~avE~d~~~~ 77 (272)
T PRK00274 20 LGQ--NFLIDENIL--------DKIVD---AAGPQPGDNVLEIGPGLGALTEPLLERA---A------KVTAVEIDRDLA 77 (272)
T ss_pred cCc--CcCCCHHHH--------HHHHH---hcCCCCcCeEEEeCCCccHHHHHHHHhC---C------cEEEEECCHHHH
Confidence 444 488887753 22232 2233233589999999999999987652 1 689999999999
Q ss_pred HHHHhhc
Q 015173 205 KLQHHNL 211 (412)
Q Consensus 205 ~~Qk~~L 211 (412)
+.-++++
T Consensus 78 ~~~~~~~ 84 (272)
T PRK00274 78 PILAETF 84 (272)
T ss_pred HHHHHhh
Confidence 8877765
No 25
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=95.25 E-value=0.13 Score=48.26 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 148 ~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
++.......+.+...+|+|+|||+|.++.-+++. . .+|+.+|+|+.+.+.-++++.
T Consensus 51 ~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~---~------~~v~~~D~s~~~i~~a~~~~~ 106 (230)
T PRK07580 51 TVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR---G------AKVVASDISPQMVEEARERAP 106 (230)
T ss_pred HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc---C------CEEEEEECCHHHHHHHHHHHH
Confidence 3444444434444569999999999988776532 1 259999999999877776654
No 26
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.22 E-value=0.05 Score=52.71 Aligned_cols=47 Identities=30% Similarity=0.487 Sum_probs=36.6
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+....-+|+|+|||.|.|..-+++.. + .++.||+++.+.+.-++++
T Consensus 25 ~~~~~~~~VLEiG~G~G~lt~~L~~~~---~------~v~~iE~d~~~~~~l~~~~ 71 (253)
T TIGR00755 25 ANVLEGDVVLEIGPGLGALTEPLLKRA---K------KVTAIEIDPRLAEILRKLL 71 (253)
T ss_pred cCCCCcCEEEEeCCCCCHHHHHHHHhC---C------cEEEEECCHHHHHHHHHHh
Confidence 343334589999999999999987653 1 4899999999988776655
No 27
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=95.18 E-value=0.034 Score=45.75 Aligned_cols=45 Identities=24% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
|+|+|||+|+....+++.+..-| +.+++.||+|+.+-+.-+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~----~~~~~gvD~s~~~l~~~~~~~~ 45 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGP----SSRVIGVDISPEMLELAKKRFS 45 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HHHHHHHHHHSH
T ss_pred CEEeecCCcHHHHHHHHHhhhcc----cceEEEEECCHHHHHHHHHhch
Confidence 79999999999999998863222 2489999999999887776654
No 28
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=95.06 E-value=0.16 Score=47.69 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
...+|+|+|||.|.++.-+.+. ..+++-||+||.+.+..++++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---------~~~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---------GAIVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 3469999999999988877542 1268999999999988877764
No 29
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.05 E-value=0.097 Score=49.15 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=36.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||+|.++.-+.+.+.. .-+++-||+|+.+.+.-++++..
T Consensus 74 ~~VLDiG~GsG~~~~~la~~~~~------~g~V~~iD~~~~~~~~a~~~l~~ 119 (205)
T PRK13944 74 MKILEVGTGSGYQAAVCAEAIER------RGKVYTVEIVKELAIYAAQNIER 119 (205)
T ss_pred CEEEEECcCccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 58999999999999777665421 12699999999999877777753
No 30
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=95.01 E-value=0.15 Score=49.28 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 148 ~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.+..+...++.....+|+|+|||+|.++..+.+. .|. .+++-||+||.+.+.-++
T Consensus 17 ~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~---~p~----~~v~gvD~s~~~~~~a~~ 71 (255)
T PRK14103 17 PFYDLLARVGAERARRVVDLGCGPGNLTRYLARR---WPG----AVIEALDSSPEMVAAARE 71 (255)
T ss_pred HHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHH---CCC----CEEEEEECCHHHHHHHHh
Confidence 3445555565544569999999999998877654 232 379999999998776544
No 31
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.00 E-value=0.17 Score=48.87 Aligned_cols=45 Identities=22% Similarity=0.426 Sum_probs=35.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+|+|||+|.++..+++.+ | ..+++.+|+|+...+.-++++.
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~---~----~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKER---P----DAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 4689999999999998887654 2 2479999999998777666554
No 32
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=94.89 E-value=0.16 Score=44.89 Aligned_cols=47 Identities=21% Similarity=0.412 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
...+||++|+|+|.|..-+...|.+. ...++++.||.++.+.+.-.+
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCcHHHHHHHH
Confidence 45799999999999999988877533 235689999999988655443
No 33
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=94.88 E-value=0.12 Score=50.99 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=39.5
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
+-+...+++++++|+|..|.-||++....+.. ..-++.++++||.+-..-++
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~-~~~~V~v~Dinp~mL~vgkq 148 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGD-RESKVTVLDINPHMLAVGKQ 148 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCC-CCceEEEEeCCHHHHHHHHH
Confidence 33345799999999999999999998743321 23479999999999765444
No 34
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=94.83 E-value=0.3 Score=48.43 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=46.9
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|-|+.-|+.-.+.-+.+..|+ ... ...+|+|+|||+|.++.-+.+.. | ..+++-||+|+...+.-
T Consensus 96 ~~vlipr~~te~lv~~~l~~~~-----~~~--~~~~vLDlG~GsG~i~~~la~~~---~----~~~v~avDis~~al~~A 161 (284)
T TIGR03533 96 ERVLIPRSPIAELIEDGFAPWL-----EPE--PVKRILDLCTGSGCIAIACAYAF---P----EAEVDAVDISPDALAVA 161 (284)
T ss_pred CCCccCCCchHHHHHHHHHHHh-----ccC--CCCEEEEEeCchhHHHHHHHHHC---C----CCEEEEEECCHHHHHHH
Confidence 4667766666444333332221 111 22489999999999998887543 2 24799999999998877
Q ss_pred Hhhcc
Q 015173 208 HHNLK 212 (412)
Q Consensus 208 k~~L~ 212 (412)
++++.
T Consensus 162 ~~n~~ 166 (284)
T TIGR03533 162 EINIE 166 (284)
T ss_pred HHHHH
Confidence 76664
No 35
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=94.73 E-value=0.3 Score=49.12 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=35.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++.-+.+. .| ..+++.+|+|+...+.-++++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~---~p----~~~V~avDis~~al~~A~~n~~ 178 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA---FP----DAEVDAVDISPDALAVAEINIE 178 (307)
T ss_pred CEEEEEechhhHHHHHHHHH---CC----CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999999887654 23 2479999999999888777664
No 36
>PRK08317 hypothetical protein; Provisional
Probab=94.57 E-value=0.15 Score=47.21 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=38.8
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
++.++.....+|+|+|||.|.++..+.+.+. | ..+++.+|.|+.+.+..+++
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~--~----~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVG--P----EGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcC--C----CcEEEEEeCCHHHHHHHHHH
Confidence 3444544556999999999999999876541 2 23799999999987776654
No 37
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.56 E-value=0.093 Score=48.16 Aligned_cols=49 Identities=22% Similarity=0.409 Sum_probs=36.7
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+.+..-+|+|+|||+|.++..+.+. .| ..+++.||+|+.+.+.-++++.
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~---~~----~~~v~~vD~s~~~~~~a~~n~~ 76 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQ---FP----SLQVTAIERNPDALRLIKENRQ 76 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHH---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence 3334458999999999999988764 23 2479999999988776555553
No 38
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=94.46 E-value=0.078 Score=49.73 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 134 SPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 134 SpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..|--|.+|.+...|..- .+.+ .-+|+|+|||+|.++..+.+. +|. .+++-||+|+.+.+..++++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~----~~~~-~~~VLDiGcGtG~~~~~la~~---~p~----~~v~gVD~s~~~i~~a~~~~~ 85 (202)
T PRK00121 19 IEELWPRLSPAPLDWAEL----FGND-APIHLEIGFGKGEFLVEMAKA---NPD----INFIGIEVHEPGVGKALKKIE 85 (202)
T ss_pred hcccchhhcCCCCCHHHH----cCCC-CCeEEEEccCCCHHHHHHHHH---CCC----ccEEEEEechHHHHHHHHHHH
Confidence 333345666666555332 1222 358999999999999988654 232 369999999999988887664
No 39
>PLN02244 tocopherol O-methyltransferase
Probab=94.45 E-value=0.35 Score=49.10 Aligned_cols=63 Identities=14% Similarity=0.030 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHcCC-----CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 141 FGEMVGVWAMCLWEQMGQ-----PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 141 FGe~Ia~~~~~~w~~~g~-----p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
|.+.-.+.+..+++..+. ....+|+|+|||.|.++..+.+.+ ..+++-||+|+.+.+.-+++.
T Consensus 94 ~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--------g~~v~gvD~s~~~i~~a~~~~ 161 (340)
T PLN02244 94 HRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--------GANVKGITLSPVQAARANALA 161 (340)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHH
Confidence 344444444555555554 334689999999999998876542 237899999999887766654
No 40
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=94.43 E-value=0.11 Score=49.02 Aligned_cols=47 Identities=26% Similarity=0.310 Sum_probs=37.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.-+|+|+|||+|.++.-+.+.+.. .-+++-||++|.+.+.-++++..
T Consensus 77 g~~VLdIG~GsG~~t~~la~~~~~------~~~V~~vE~~~~~~~~a~~~l~~ 123 (212)
T PRK13942 77 GMKVLEIGTGSGYHAAVVAEIVGK------SGKVVTIERIPELAEKAKKTLKK 123 (212)
T ss_pred cCEEEEECCcccHHHHHHHHhcCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 359999999999999777665321 23799999999999988887753
No 41
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=94.38 E-value=0.1 Score=52.28 Aligned_cols=43 Identities=26% Similarity=0.464 Sum_probs=35.7
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||.|.|..-++... -+++.||+++.+.+.-++++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~---------~~V~avEiD~~li~~l~~~~~ 79 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLA---------KKVIAIEIDPRMVAELKKRFQ 79 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhC---------CcEEEEECCHHHHHHHHHHHH
Confidence 3589999999999998887541 158999999999998887774
No 42
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=94.32 E-value=0.62 Score=45.76 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=40.1
Q ss_pred HHHHHHHHHc-CCCCCc--EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 147 VWAMCLWEQM-GQPNRV--NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 147 ~~~~~~w~~~-g~p~~l--~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
+|+...|-.+ ..+++. +|+|+|||-|-....||++-. + .++.++-.+.||.-.+.-++
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~---n--~~l~v~acDfsp~Ai~~vk~ 115 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSP---N--NRLKVYACDFSPRAIELVKK 115 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCC---C--CCeEEEEcCCChHHHHHHHh
Confidence 3555555443 233333 899999999999999987642 2 23688889999987766554
No 43
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=94.20 E-value=0.1 Score=56.02 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=56.4
Q ss_pred CCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCc-cccceEEEEecChhhHH
Q 015173 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNF-TESLHIHLVECSPTLQK 205 (412)
Q Consensus 127 ~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~-~~~l~y~iVE~Sp~Lr~ 205 (412)
+.|-|+|++.|....-+++..... ........+|+|.|||+|.|...+++.+...... ...+.++.+|+++.+.+
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~----~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~ 77 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIG----KNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLK 77 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcc----hhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHH
Confidence 369999999996655444322211 1111134699999999999999999987531111 12357899999999988
Q ss_pred HHHhhccc
Q 015173 206 LQHHNLKC 213 (412)
Q Consensus 206 ~Qk~~L~~ 213 (412)
.-+.+|..
T Consensus 78 ~a~~~l~~ 85 (524)
T TIGR02987 78 RAKKLLGE 85 (524)
T ss_pred HHHHHHhh
Confidence 87777643
No 44
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=94.16 E-value=0.19 Score=53.28 Aligned_cols=65 Identities=14% Similarity=0.164 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 139 QMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
..|.++|...+.+..+..... ....|+.+|||||-|..-.+++.+... .+.+++-||.||.....
T Consensus 164 ~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~---~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 164 DQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAG---GAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHC---CESEEEEEESSTHHHHH
T ss_pred HHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhC---CCeEEEEEcCCHhHHHH
Confidence 467788766666554433221 246899999999999998888865322 35689999999965433
No 45
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.12 E-value=0.23 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=35.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||.|.++.-+.+. .|. .+++.||+|+.+-+.-++++..
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~p~----~~v~~vDis~~Al~~A~~nl~~ 242 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---SPK----IRLTLSDVSAAALESSRATLAA 242 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999998887653 332 4799999999888887777754
No 46
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=94.06 E-value=1 Score=44.20 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHHhcCCcccHHHHHHHhhcCCCCCccC---CCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHH-HHcC
Q 015173 82 LESELVKHLKGIIKFRGGPISVAEYMEEVLTNPKAGFYI---NRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLW-EQMG 157 (412)
Q Consensus 82 ~~~~L~~~i~~~I~~~~GpIsf~dFM~~aLY~P~~GYY~---~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w-~~~g 157 (412)
+...|...|..+++.. |--++++|.+....++...=.. ..--++. ..|+=-|+ .|.. +..++...+ +...
T Consensus 23 k~~~l~~rl~~r~~~~-~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~-T~FfR~~~---~~~~-l~~~vlp~l~~~~~ 96 (264)
T smart00138 23 KRTLLQSRLSRRLRVL-GLKDFSEYLELLTSHRGEEELAELLDLMTTNE-TRFFRESK---HFEA-LEEKVLPLLIASRR 96 (264)
T ss_pred hHHHHHHHHHHHHHHc-CCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCC-CcccCCcH---HHHH-HHHHHhHHHHHhcC
Confidence 4678999999999998 7678999999888775211000 0001222 22332222 2222 333333332 2222
Q ss_pred CCCCcEEEEEcCCcchhHHHHHHHHhc-CcCc-cccceEEEEecChhhHHHHHhh
Q 015173 158 QPNRVNLVELGPGRGTLMADLLRGASK-FKNF-TESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 158 ~p~~l~IvEiGaG~GtLa~DIL~~l~~-~p~~-~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
...+++|+++|||+|.-+..|.-.+.+ .+.. ....+++-+|+|+.+-+.-++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 334589999999999744433332221 2211 1245899999999987666553
No 47
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=93.81 E-value=0.23 Score=46.30 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=36.0
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+|+|||.|.++..+++.. | ...+++.+|.|+.+.+.-++++.
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~---~---~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV---G---KTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc---C---CCCeEEEEeCCHHHHHHHHHhhc
Confidence 4699999999999998887654 2 13489999999988776666553
No 48
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.73 E-value=0.17 Score=46.87 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=35.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||+|.++..+.+. .|. .+++.||.||.+.+.-++++.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~~---~~~----~~V~~vD~s~~~~~~a~~n~~ 85 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGLL---CPK----GRVIAIERDEEVVNLIRRNCD 85 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHHH---CCC----CEEEEEeCCHHHHHHHHHHHH
Confidence 358999999999998887543 222 379999999999888777664
No 49
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=93.72 E-value=0.28 Score=45.92 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 125 ~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
+.+.+++++.....+++-+.+-.-.. + ....|...+|+|+|||+|.++.-+.+. .| ..+++.||+|+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~d~l~-l--~~~l~~g~~VLDiGcGtG~~al~la~~---~~----~~~V~giD~s~~~l 82 (187)
T PRK00107 13 WNKKYNLTAIRDPEELWERHILDSLA-I--APYLPGGERVLDVGSGAGFPGIPLAIA---RP----ELKVTLVDSLGKKI 82 (187)
T ss_pred hcccccccccCCHHHHHHHHHHHHHH-H--HhhcCCCCeEEEEcCCCCHHHHHHHHH---CC----CCeEEEEeCcHHHH
Confidence 34567888877776644443322111 0 111222468999999999988887653 23 23799999999998
Q ss_pred HHHHhhcc
Q 015173 205 KLQHHNLK 212 (412)
Q Consensus 205 ~~Qk~~L~ 212 (412)
+.-++++.
T Consensus 83 ~~A~~~~~ 90 (187)
T PRK00107 83 AFLREVAA 90 (187)
T ss_pred HHHHHHHH
Confidence 77666654
No 50
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=93.71 E-value=0.24 Score=46.62 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=36.7
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..+|+|+|||+|.++.-+.+... ...+++-||++|.+.+.-++++..
T Consensus 78 ~~~VLDiG~GsG~~a~~la~~~~------~~g~V~~vD~~~~~~~~A~~~~~~ 124 (215)
T TIGR00080 78 GMKVLEIGTGSGYQAAVLAEIVG------RDGLVVSIERIPELAEKAERRLRK 124 (215)
T ss_pred cCEEEEECCCccHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 35999999999999987665432 123689999999999888877753
No 51
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=93.69 E-value=0.72 Score=45.50 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=35.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++..+...+ | ..+++.||+|+...+..++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---~----~~~v~avDis~~al~~a~~n~~ 159 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---P----NAEVIAVDISPDALAVAEENAE 159 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999998886653 2 2479999999998888777664
No 52
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=93.67 E-value=0.085 Score=45.95 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
+...+|+|+|||.|.++.-+ +..+ .+++.||+|+.+.+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l----~~~~-----~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRAL----AKRG-----FEVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHH----HHTT-----SEEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHH----HHhC-----CEEEEEECCHHHHhh
Confidence 44569999999999877666 2221 179999999998777
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.65 E-value=0.31 Score=50.61 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=35.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||+|.++.-+.+. +|. .+++.||.|+..-+..++++..
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~P~----~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---NPQ----AKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---CCC----CEEEEEECCHHHHHHHHHHHHH
Confidence 48999999999988766543 443 3799999999988888877753
No 54
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=93.64 E-value=0.24 Score=48.42 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=34.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
.+|+|+|||+|.++..+.+.+... ...+++-||+|+.+.+.-+++
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~----~~~~v~giD~s~~~l~~A~~~ 131 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEI----TTMQLFGLDISKVAIKYAAKR 131 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccc----cCCeEEEECCCHHHHHHHHHh
Confidence 589999999999999987764321 113689999999988776654
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=93.62 E-value=0.52 Score=48.86 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 148 ~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+..+.+.++....-+|+|+|||.|.++..+.+.. ..+++-||+|+.+.+.-+++.
T Consensus 155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--------g~~V~giDlS~~~l~~A~~~~ 210 (383)
T PRK11705 155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--------GVSVVGVTISAEQQKLAQERC 210 (383)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--------CCEEEEEeCCHHHHHHHHHHh
Confidence 33444455565444699999999999988775431 237899999999988877765
No 56
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.59 E-value=0.19 Score=46.73 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.4
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+++....-+|+|+|||+|.++..+++.+. ...+++.||.|+.+.+.-++++..
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~------~~~~v~avD~~~~~~~~a~~n~~~ 87 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVG------ETGKVYAVDKDEKAINLTRRNAEK 87 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 44555556999999999999999877642 123799999999998877766643
No 57
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=93.56 E-value=0.16 Score=42.26 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=37.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+|+|+|||+|+++.-+++.. ..+++-||++|...+.-++++..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~--------~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG--------AARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC--------TCEEEEEESSHHHHHHHHHHCHH
T ss_pred CEEEEcCcchHHHHHHHHHHC--------CCeEEEEEECHHHHHHHHHHHHH
Confidence 489999999999999998763 23799999999999999887753
No 58
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.48 E-value=0.43 Score=45.20 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=35.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++..+++.. | ..+++.+|+|+.+.+.-++++.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~---~----~~~v~~iD~~~~~~~~a~~~~~ 132 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKER---P----DARVTAVDISPEALAVARKNAA 132 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHC---C----CCEEEEEECCHHHHHHHHHHHH
Confidence 589999999999998887643 2 2379999999999887776654
No 59
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=93.35 E-value=0.12 Score=51.28 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=50.0
Q ss_pred CCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 127 AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 127 ~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
+.|-|+|+.+|..+..+++ .....-+|++..||+|.|...+++.++....-....+++-+|+++.....
T Consensus 24 ~~G~~~TP~~i~~l~~~~~-----------~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~l 92 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLL-----------NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVAL 92 (311)
T ss_dssp SCGGC---HHHHHHHHHHH-----------TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHH
T ss_pred ccceeehHHHHHHHHHhhh-----------hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHH
Confidence 4699999999988766655 21123479999999999999999988532212234579999999999887
Q ss_pred HHhhc
Q 015173 207 QHHNL 211 (412)
Q Consensus 207 Qk~~L 211 (412)
-+-+|
T Consensus 93 a~~nl 97 (311)
T PF02384_consen 93 AKLNL 97 (311)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 66554
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=93.33 E-value=0.19 Score=46.67 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=34.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-.|+|+|||+|.++..+.+. +|+ ..++-||+|+.+.+.-++++.
T Consensus 18 ~~ilDiGcG~G~~~~~la~~---~p~----~~v~gvD~~~~~l~~a~~~~~ 61 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQ---NPD----KNFLGIEIHTPIVLAANNKAN 61 (194)
T ss_pred ceEEEeCCCccHHHHHHHHh---CCC----CCEEEEEeeHHHHHHHHHHHH
Confidence 38999999999999888654 454 379999999988766555543
No 61
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.31 E-value=0.12 Score=44.66 Aligned_cols=40 Identities=28% Similarity=0.528 Sum_probs=31.7
Q ss_pred HHHHH-HHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHH
Q 015173 139 QMFGE-MVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADL 178 (412)
Q Consensus 139 ~~FGe-~Ia~~~~~~w~~~g~p-~~l~IvEiGaG~GtLa~DI 178 (412)
-+|-. .||.|+..+|+.+..+ .....|++|||+|-|..=+
T Consensus 35 ~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL 76 (112)
T PF07757_consen 35 HVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYIL 76 (112)
T ss_pred hHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHH
Confidence 35554 4899999999998765 5678999999999876544
No 62
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=93.22 E-value=0.74 Score=46.41 Aligned_cols=75 Identities=25% Similarity=0.264 Sum_probs=52.5
Q ss_pred CCCCCeeCCCChh----HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 015173 126 GAEGDFITSPEVS----QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (412)
Q Consensus 126 G~~GDFiTSpEIs----~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (412)
|...-|+|.|-|- --+|--| +++.+..+...+|+++|||-|-|..-+.+. .|+ .+++|||+|.
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~l------Ll~~l~~~~~~~vlDlGCG~Gvlg~~la~~---~p~----~~vtmvDvn~ 192 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRL------LLETLPPDLGGKVLDLGCGYGVLGLVLAKK---SPQ----AKLTLVDVNA 192 (300)
T ss_pred cCceEEEeCCCCCcCCCcChHHHH------HHHhCCccCCCcEEEeCCCccHHHHHHHHh---CCC----CeEEEEecCH
Confidence 6788999999871 1223211 233444443458999999999999887654 443 4799999999
Q ss_pred hhHHHHHhhccc
Q 015173 202 TLQKLQHHNLKC 213 (412)
Q Consensus 202 ~Lr~~Qk~~L~~ 213 (412)
.--+.-++++..
T Consensus 193 ~Av~~ar~Nl~~ 204 (300)
T COG2813 193 RAVESARKNLAA 204 (300)
T ss_pred HHHHHHHHhHHH
Confidence 888887777764
No 63
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=93.22 E-value=0.23 Score=46.30 Aligned_cols=45 Identities=22% Similarity=0.435 Sum_probs=35.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+.|+|+|||+|-+.+.||+.--. |+ ...+||.|+..-..-.++.
T Consensus 49 glpVlElGPGTGV~TkaIL~~gv~-~~-----~L~~iE~~~dF~~~L~~~~ 93 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRGVR-PE-----SLTAIEYSPDFVCHLNQLY 93 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcCCC-cc-----ceEEEEeCHHHHHHHHHhC
Confidence 358999999999999999987432 22 5789999999877655543
No 64
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=93.21 E-value=0.66 Score=45.29 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=40.9
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
++.....+|+|+|||+|.+|..+.+... ..+++.+|+|+.|-+.-++++..
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~g-------~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSVG-------TGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhcC-------CceEEEEECCHHHHHHHHHHhhc
Confidence 3443457999999999999988866542 45899999999999998888754
No 65
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=92.95 E-value=0.55 Score=45.74 Aligned_cols=96 Identities=18% Similarity=0.239 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCCCCCccCCCCCCC------CCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHH
Q 015173 103 VAEYMEEVLTNPKAGFYINRDVFG------AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176 (412)
Q Consensus 103 f~dFM~~aLY~P~~GYY~~~~~~G------~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~ 176 (412)
|.++++.-+-+...-|-.....|+ ..|-|+-.++ .|.+..++....... +...+|+|+|||+|.++.
T Consensus 30 ~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~-----Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l 102 (251)
T TIGR03704 30 LAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRR-----TEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGA 102 (251)
T ss_pred HHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCcc-----HHHHHHHHHHhhccc--CCCCEEEEecCchHHHHH
Confidence 555555555444445555544442 1355652232 234444444322211 223589999999999998
Q ss_pred HHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 177 DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+.+.. +. .+++.||+||..-+..++++.
T Consensus 103 ~la~~~---~~----~~v~~vDis~~al~~A~~N~~ 131 (251)
T TIGR03704 103 ALAAAL---DG----IELHAADIDPAAVRCARRNLA 131 (251)
T ss_pred HHHHhC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 886543 22 368999999999888777764
No 66
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=92.87 E-value=0.41 Score=46.82 Aligned_cols=66 Identities=14% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 129 GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
.||+.+-.+-.. ..+...++.+...+|+|+|||.|.++..+.+. + ..+++.||+|+.+.+..+
T Consensus 30 ~~~~~~gg~~~~---------~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~---~-----~~~v~giD~s~~~~~~a~ 92 (263)
T PTZ00098 30 EDYISSGGIEAT---------TKILSDIELNENSKVLDIGSGLGGGCKYINEK---Y-----GAHVHGVDICEKMVNIAK 92 (263)
T ss_pred CCCCCCCchHHH---------HHHHHhCCCCCCCEEEEEcCCCChhhHHHHhh---c-----CCEEEEEECCHHHHHHHH
Confidence 466666555332 22333455555579999999999988776532 1 237999999999988777
Q ss_pred hhc
Q 015173 209 HNL 211 (412)
Q Consensus 209 ~~L 211 (412)
++.
T Consensus 93 ~~~ 95 (263)
T PTZ00098 93 LRN 95 (263)
T ss_pred HHc
Confidence 654
No 67
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=92.80 E-value=0.43 Score=51.29 Aligned_cols=44 Identities=25% Similarity=0.362 Sum_probs=35.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++..++..+ |. .+++.||+|+...+..++++.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~---p~----~~v~avDis~~al~~A~~N~~ 183 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCEL---PN----ANVIATDISLDAIEVAKSNAI 183 (506)
T ss_pred CEEEEccCchhHHHHHHHHHC---CC----CeEEEEECCHHHHHHHHHHHH
Confidence 589999999999999887543 32 379999999988888777664
No 68
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=92.79 E-value=0.3 Score=45.19 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=33.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++.-+... .| ..+++.||.|+.+.+.-++++.
T Consensus 44 ~~vLDiGcGtG~~s~~la~~---~~----~~~V~~iD~s~~~~~~a~~~~~ 87 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIA---RP----ELKLTLLESNHKKVAFLREVKA 87 (181)
T ss_pred CeEEEecCCCCccHHHHHHH---CC----CCeEEEEeCcHHHHHHHHHHHH
Confidence 58999999999988877532 22 2369999999988776555543
No 69
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.76 E-value=0.41 Score=44.16 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=37.3
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
....+...+|+|+|||.|.++..+++.. |. ..+++.+|+|+.+.+.-++++
T Consensus 34 ~~~~~~~~~vldiG~G~G~~~~~~~~~~---~~---~~~~~~iD~~~~~~~~~~~~~ 84 (223)
T TIGR01934 34 LIGVFKGQKVLDVACGTGDLAIELAKSA---PD---RGKVTGVDFSSEMLEVAKKKS 84 (223)
T ss_pred HhccCCCCeEEEeCCCCChhHHHHHHhc---CC---CceEEEEECCHHHHHHHHHHh
Confidence 3333345699999999999988887654 22 247999999998876655544
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=92.73 E-value=0.4 Score=45.93 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=32.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.-+|+|+|||+|.++..+.+ . ..+++.+|+||.+.+..+++.
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~----~-----~~~v~~~D~s~~~l~~a~~~~ 84 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRE----R-----GSQVTALDLSPPMLAQARQKD 84 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHH----c-----CCeEEEEECCHHHHHHHHhhC
Confidence 35899999999998766532 1 127999999999988777654
No 71
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.40 E-value=0.42 Score=44.68 Aligned_cols=66 Identities=26% Similarity=0.277 Sum_probs=43.5
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|.++++|++....-+ .+......+|+|+|||+|.++. +|.... . +++.||.|+.+.+.-
T Consensus 57 ~~~~~~~p~~~~~l~~-----------~l~~~~~~~VLeiG~GsG~~t~-~la~~~--~------~v~~vd~~~~~~~~a 116 (212)
T PRK00312 57 CGQTISQPYMVARMTE-----------LLELKPGDRVLEIGTGSGYQAA-VLAHLV--R------RVFSVERIKTLQWEA 116 (212)
T ss_pred CCCeeCcHHHHHHHHH-----------hcCCCCCCEEEEECCCccHHHH-HHHHHh--C------EEEEEeCCHHHHHHH
Confidence 3567777776432211 1232234699999999999887 433321 1 589999999998887
Q ss_pred Hhhccc
Q 015173 208 HHNLKC 213 (412)
Q Consensus 208 k~~L~~ 213 (412)
++++..
T Consensus 117 ~~~~~~ 122 (212)
T PRK00312 117 KRRLKQ 122 (212)
T ss_pred HHHHHH
Confidence 777653
No 72
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=92.24 E-value=0.57 Score=44.62 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=36.8
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.++.+.--+++|+|||.|.|...+.... + ++.-+|+|+.--++-+++|..
T Consensus 38 aLp~~ry~~alEvGCs~G~lT~~LA~rC-------d--~LlavDis~~Al~~Ar~Rl~~ 87 (201)
T PF05401_consen 38 ALPRRRYRRALEVGCSIGVLTERLAPRC-------D--RLLAVDISPRALARARERLAG 87 (201)
T ss_dssp HHTTSSEEEEEEE--TTSHHHHHHGGGE-------E--EEEEEES-HHHHHHHHHHTTT
T ss_pred hcCccccceeEecCCCccHHHHHHHHhh-------C--ceEEEeCCHHHHHHHHHhcCC
Confidence 4566655689999999999998873221 1 689999999999999998874
No 73
>PRK05785 hypothetical protein; Provisional
Probab=92.23 E-value=0.42 Score=45.71 Aligned_cols=41 Identities=10% Similarity=0.226 Sum_probs=32.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.-+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+..++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~--------~~~v~gvD~S~~Ml~~a~~ 92 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF--------KYYVVALDYAENMLKMNLV 92 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc--------CCEEEEECCCHHHHHHHHh
Confidence 3589999999999887765442 1379999999999887665
No 74
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=92.09 E-value=0.29 Score=38.42 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.3
Q ss_pred EEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 165 VELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 165 vEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+|+|||.|..+.-+.+. ...+++-+|+|+.+.+.-++++.
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~~~~~~~~~~~ 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEEMLEQARKRLK 40 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HHHHHHHHHHTT
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHHHHHHHHhccc
Confidence 69999999999888665 23379999999998877777654
No 75
>PRK00811 spermidine synthase; Provisional
Probab=92.01 E-value=0.41 Score=47.44 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|..-++-.---.|=|+++.-.+.. .|.+-+|+++|+|.|.++..+|+. +. .-++.+||++|.+.+.-
T Consensus 49 Dg~~q~~~~de~~Y~e~l~h~~~~~-----~~~p~~VL~iG~G~G~~~~~~l~~----~~---~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 49 DGCVMTTERDEFIYHEMMTHVPLFA-----HPNPKRVLIIGGGDGGTLREVLKH----PS---VEKITLVEIDERVVEVC 116 (283)
T ss_pred CCeeeecCcchhhHHHHhhhHHHhh-----CCCCCEEEEEecCchHHHHHHHcC----CC---CCEEEEEeCCHHHHHHH
Confidence 4666655433345666666443321 233458999999999999998753 21 12799999999999988
Q ss_pred Hhhcc
Q 015173 208 HHNLK 212 (412)
Q Consensus 208 k~~L~ 212 (412)
++.+.
T Consensus 117 ~~~~~ 121 (283)
T PRK00811 117 RKYLP 121 (283)
T ss_pred HHHhH
Confidence 87764
No 76
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=0.47 Score=45.46 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=49.0
Q ss_pred CCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 015173 124 VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (412)
Q Consensus 124 ~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (412)
++| .|-++.+|.+- |+.+. .+..-..-+|+|||+|+|..++=+-+-.. +++-||..+.|
T Consensus 48 pi~-~gqtis~P~~v-------A~m~~----~L~~~~g~~VLEIGtGsGY~aAvla~l~~---------~V~siEr~~~L 106 (209)
T COG2518 48 PIG-CGQTISAPHMV-------ARMLQ----LLELKPGDRVLEIGTGSGYQAAVLARLVG---------RVVSIERIEEL 106 (209)
T ss_pred cCC-CCceecCcHHH-------HHHHH----HhCCCCCCeEEEECCCchHHHHHHHHHhC---------eEEEEEEcHHH
Confidence 676 78888888753 22222 22222235999999999997765543322 69999999999
Q ss_pred HHHHHhhccc
Q 015173 204 QKLQHHNLKC 213 (412)
Q Consensus 204 r~~Qk~~L~~ 213 (412)
.+.-+++|..
T Consensus 107 ~~~A~~~L~~ 116 (209)
T COG2518 107 AEQARRNLET 116 (209)
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 77
>PRK04457 spermidine synthase; Provisional
Probab=91.68 E-value=0.56 Score=46.01 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=36.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+-+|+|+|+|.|+++.-+++. .| ..+++.||++|.+.+.-++.+.
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~---~p----~~~v~~VEidp~vi~~A~~~f~ 111 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTY---LP----DTRQTAVEINPQVIAVARNHFE 111 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHh---CC----CCeEEEEECCHHHHHHHHHHcC
Confidence 348999999999999988765 24 3479999999999998777664
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=91.66 E-value=0.6 Score=43.55 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 142 GEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
......|+...+..... ....+|+|+|||+|.++..+.+. . .+++.+|.|+.+.+.-++++.
T Consensus 26 ~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~~ 88 (224)
T TIGR01983 26 NPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL---G------ANVTGIDASEENIEVAKLHAK 88 (224)
T ss_pred hHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc---C------CeEEEEeCCHHHHHHHHHHHH
Confidence 33345666666654321 23569999999999988876542 1 249999999988766555443
No 79
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=91.54 E-value=0.51 Score=43.98 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=32.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||.|.++.-+.+. ..+++-||+|+.+.+.-++++.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~---------g~~V~gvD~S~~~i~~a~~~~~ 73 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN---------GFDVTAWDKNPMSIANLERIKA 73 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 58999999999988776542 1279999999998877666543
No 80
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=91.39 E-value=0.63 Score=44.40 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
...+++|+|+|+|.+++=+-.-.... -+++-||..|.|.+.-+++|..
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~------g~Vv~vE~~~~l~~~A~~~l~~ 119 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPV------GRVVSVERDPELAERARRNLAR 119 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTT------EEEEEEESBHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCcc------ceEEEECccHHHHHHHHHHHHH
Confidence 34699999999999988765544221 1588999999999998888864
No 81
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=91.37 E-value=0.34 Score=44.08 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=33.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|.++..+.+. . . +++.||.||.+.+.-++++.
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~---~----~--~v~~vD~s~~~~~~a~~~~~ 62 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGK---G----K--CILTTDINPFAVKELRENAK 62 (179)
T ss_pred CeEEEeCCChhHHHHHHHhc---C----C--EEEEEECCHHHHHHHHHHHH
Confidence 48999999999998877642 1 1 69999999999877666654
No 82
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=91.19 E-value=2.1 Score=43.01 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=65.3
Q ss_pred HHHHHHHhhcCCCCCccCCCCCCC------CCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHH
Q 015173 103 VAEYMEEVLTNPKAGFYINRDVFG------AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176 (412)
Q Consensus 103 f~dFM~~aLY~P~~GYY~~~~~~G------~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~ 176 (412)
++++.++-+-+-..=|--+...|| +.|=||-=||. |.+-.|+.+...+...-.+..|+|+|+|+|..+.
T Consensus 90 i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpET-----EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIsl 164 (328)
T KOG2904|consen 90 IRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPET-----EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISL 164 (328)
T ss_pred HHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccH-----HHHHHHHHHHHhhhhhcccceEEEecCCccHHHH
Confidence 445544444443334444444566 47888888886 3444566666665555555689999999999999
Q ss_pred HHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 177 DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+|..+. ..+++-||.|+.--+.-+++.
T Consensus 165 sll~~L~-------~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 165 SLLHGLP-------QCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred HHHhcCC-------CceEEEEeccHHHHHHHHHHH
Confidence 9987653 347899999998766555443
No 83
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.18 E-value=0.37 Score=37.19 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=29.6
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
+|+|+|||.|.++..++. . ...+|+.+|.++...+..+
T Consensus 1 ~ildig~G~G~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~ 38 (107)
T cd02440 1 RVLDLGCGTGALALALAS----G----PGARVTGVDISPVALELAR 38 (107)
T ss_pred CeEEEcCCccHHHHHHhc----C----CCCEEEEEeCCHHHHHHHH
Confidence 489999999998877765 1 2348999999998766555
No 84
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=90.99 E-value=0.87 Score=44.49 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
+.+...+|+|+|||+|.++..+.+.+. | ..+++-||+|+.+-+.-+++.
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~--~----~~~V~gvD~S~~ml~~A~~r~ 118 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVG--S----DGKVMGLDFSSEQLAVAASRQ 118 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhC--C----CCEEEEEECCHHHHHHHHHHh
Confidence 333456999999999998876554321 1 136899999999987766543
No 85
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=90.93 E-value=0.67 Score=45.47 Aligned_cols=72 Identities=19% Similarity=0.337 Sum_probs=46.6
Q ss_pred CCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 129 GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
|..-++..--..|-|+++.--+. ..+.+-+|+|+|+|.|.++..+++.. ...++++||+++.+.+.-+
T Consensus 46 g~~q~~~~~e~~y~e~l~~~~l~-----~~~~p~~VL~iG~G~G~~~~~ll~~~-------~~~~v~~veid~~vi~~a~ 113 (270)
T TIGR00417 46 GVVQTTERDEFIYHEMIAHVPLF-----THPNPKHVLVIGGGDGGVLREVLKHK-------SVEKATLVDIDEKVIELSK 113 (270)
T ss_pred CcccccCchHHHHHHHhhhhHhh-----cCCCCCEEEEEcCCchHHHHHHHhCC-------CcceEEEEeCCHHHHHHHH
Confidence 44444422224566766543221 12333499999999999998887542 1237999999999988777
Q ss_pred hhcc
Q 015173 209 HNLK 212 (412)
Q Consensus 209 ~~L~ 212 (412)
+.+.
T Consensus 114 ~~~~ 117 (270)
T TIGR00417 114 KFLP 117 (270)
T ss_pred HHhH
Confidence 7653
No 86
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=90.86 E-value=0.63 Score=47.30 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=34.7
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||+|.++.-+.+.... .-.++.||.++.+.+.-++++.
T Consensus 81 g~~VLDIG~GtG~~a~~LA~~~~~------~g~VvgVDis~~~l~~Ar~~l~ 126 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSRVVGE------KGLVVSVEYSRKICEIAKRNVR 126 (322)
T ss_pred CCEEEEEeCCccHHHHHHHHhcCC------CCEEEEEECCHHHHHHHHHHHH
Confidence 358999999999999888664321 1158899999998877666554
No 87
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.57 E-value=1.6 Score=41.39 Aligned_cols=44 Identities=18% Similarity=0.325 Sum_probs=34.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-.|+++|||+|.|+.... .+..-+++=||+.|..-+.-+++..+
T Consensus 47 ~~V~DlG~GTG~La~ga~--------~lGa~~V~~vdiD~~a~ei~r~N~~~ 90 (198)
T COG2263 47 KTVLDLGAGTGILAIGAA--------LLGASRVLAVDIDPEALEIARANAEE 90 (198)
T ss_pred CEEEEcCCCcCHHHHHHH--------hcCCcEEEEEecCHHHHHHHHHHHHh
Confidence 379999999999998764 22333789999999999988887653
No 88
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=90.48 E-value=0.73 Score=46.08 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..-.|+|+|||+|-|..-+|+.-+ +++-+|+.|.|...-.++.+.
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~k---------kVvA~E~Dprmvael~krv~g 102 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGK---------KVVAVEIDPRMVAELEKRVQG 102 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC---------eEEEEecCcHHHHHHHHHhcC
Confidence 345899999999999999987654 589999999999777776654
No 89
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=90.40 E-value=0.24 Score=47.11 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
+.+|||+.-..+..+++..+....-.+++||+|.|.....+--... +. +-+=||+.|.+.+..++.+
T Consensus 20 ~~~YGEi~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~----~~---~~~GIEi~~~~~~~a~~~~ 86 (205)
T PF08123_consen 20 SETYGEISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTG----CK---KSVGIEILPELHDLAEELL 86 (205)
T ss_dssp CCCGGGCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH------S---EEEEEE-SHHHHHHHHHHH
T ss_pred CcceeecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC----Cc---EEEEEEechHHHHHHHHHH
Confidence 3478999888999999888876667999999999998765532221 11 3688999999886655433
No 90
>PRK14967 putative methyltransferase; Provisional
Probab=90.40 E-value=0.98 Score=42.76 Aligned_cols=44 Identities=16% Similarity=0.153 Sum_probs=33.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+|+|||+|.++..+.+. + .-+++.||+|+.+.+..++++.
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~----~----~~~v~~vD~s~~~l~~a~~n~~ 80 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAA----G----AGSVTAVDISRRAVRSARLNAL 80 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHc----C----CCeEEEEECCHHHHHHHHHHHH
Confidence 358999999999987766532 1 1268999999998877666553
No 91
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=90.31 E-value=0.63 Score=45.97 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=33.7
Q ss_pred HHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 015173 152 LWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (412)
Q Consensus 152 ~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (412)
.+++.|.. ....+||+|||+|.|.+-|-..+...+ .....|++||...
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~--~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDK--PSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcc--cCCccEEEEecCc
Confidence 34455543 456899999999999999988775321 1234799999844
No 92
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=90.23 E-value=1.4 Score=42.72 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=34.0
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||.|.++.-+.+... ...+++-||+|+.+.+.-+++..
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g------~~~~v~gvD~s~~~l~~A~~~~~ 123 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVG------PTGKVIGVDMTPEMLAKARANAR 123 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhC------CCCEEEEECCCHHHHHHHHHHHH
Confidence 45999999999987765544321 12368999999999888776553
No 93
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=90.17 E-value=0.81 Score=42.56 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=32.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
+.+|+|+|||+|.++..+.+. ..+++-||+|+.+.+.-+++.
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~---------g~~V~~iD~s~~~l~~a~~~~ 72 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA---------GYDVRAWDHNPASIASVLDMK 72 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC---------CCeEEEEECCHHHHHHHHHHH
Confidence 358999999999999877541 126899999998877655443
No 94
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=90.13 E-value=0.53 Score=45.49 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=33.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..+|+++|||+|.++..+.+.+. ...+++.||+|+.|-+.-++++..
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~------~~~~v~~vD~s~~ML~~a~~k~~~ 94 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVG------PNGKVVGVDISPGMLEVARKKLKR 94 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---------EEEEEES-HHHHHHHHHHHHH
T ss_pred CCEEEEeCCChHHHHHHHHHHCC------CccEEEEecCCHHHHHHHHHHHHh
Confidence 35999999999998888755432 123799999999999888877753
No 95
>PRK04266 fibrillarin; Provisional
Probab=90.04 E-value=1 Score=43.39 Aligned_cols=50 Identities=14% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
+.++.....+|+|+|||+|.+...+.+... .-+++-||+|+.+.+...++
T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-------~g~V~avD~~~~ml~~l~~~ 115 (226)
T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVE-------EGVVYAVEFAPRPMRELLEV 115 (226)
T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcC-------CCeEEEEECCHHHHHHHHHH
Confidence 445544446999999999999888765432 12699999999876654443
No 96
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=89.99 E-value=1.4 Score=43.53 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=32.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+|+|+|||+|.++.-+.+. ..+++-||.|+...+..+++..
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---------g~~V~avD~s~~ai~~~~~~~~ 163 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---------GFDVTAVDINQQSLENLQEIAE 163 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988776541 1379999999998776665543
No 97
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=89.59 E-value=1.7 Score=45.83 Aligned_cols=93 Identities=14% Similarity=0.220 Sum_probs=58.6
Q ss_pred HHHHHHHhhcCCCCCccCCCCCC-C-----CCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHH
Q 015173 103 VAEYMEEVLTNPKAGFYINRDVF-G-----AEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMA 176 (412)
Q Consensus 103 f~dFM~~aLY~P~~GYY~~~~~~-G-----~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~ 176 (412)
|.+.++..+-+...-|-.....| | ..|.|++.|+.-.+ ..++.... . ...+|+|+|||+|.++.
T Consensus 198 ~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~L-----Ve~aL~~l---~--~~~rVLDLGcGSG~Iai 267 (423)
T PRK14966 198 ADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHL-----VEAVLARL---P--ENGRVWDLGTGSGAVAV 267 (423)
T ss_pred HHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHH-----HHHhhhcc---C--CCCEEEEEeChhhHHHH
Confidence 55555555555555666654333 3 24566666665433 33333221 1 22489999999999987
Q ss_pred HHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 177 DLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 177 DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+.+. .| ..+++-||+|+.+.+.-++++.
T Consensus 268 aLA~~---~p----~a~VtAVDiS~~ALe~AreNa~ 296 (423)
T PRK14966 268 TVALE---RP----DAFVRASDISPPALETARKNAA 296 (423)
T ss_pred HHHHh---CC----CCEEEEEECCHHHHHHHHHHHH
Confidence 77543 23 2378999999999888877764
No 98
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=89.49 E-value=2.7 Score=44.28 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
...+|+|+|||+|.++..+.+.. ..+++-||+|+.+.+..+++.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~--------~~~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENF--------DVHVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhc--------CCEEEEEECCHHHHHHHHHHh
Confidence 34589999999999877665432 237999999998887766544
No 99
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=89.44 E-value=1.3 Score=44.82 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=33.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+|+|||+|.++..+.+. ..+++-||+|+.+-+.-+++..
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---------g~~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---------GAIVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---------CCEEEEEECCHHHHHHHHHHHH
Confidence 469999999999998877642 1279999999998877666553
No 100
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=89.16 E-value=0.9 Score=44.15 Aligned_cols=88 Identities=20% Similarity=0.298 Sum_probs=57.6
Q ss_pred HHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccC
Q 015173 152 LWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSL 231 (412)
Q Consensus 152 ~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~ 231 (412)
+..+...-..-+|+++|||.|....-+.+. +|+- .+.-|+.||.|-+.-+++|-... +..
T Consensus 22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~R---wP~A----~i~GiDsS~~Mla~Aa~rlp~~~--f~~----------- 81 (257)
T COG4106 22 LLARVPLERPRRVVDLGCGPGNSTELLARR---WPDA----VITGIDSSPAMLAKAAQRLPDAT--FEE----------- 81 (257)
T ss_pred HHhhCCccccceeeecCCCCCHHHHHHHHh---CCCC----eEeeccCCHHHHHHHHHhCCCCc--eec-----------
Confidence 333444334569999999999988877655 4543 68999999999988888773210 000
Q ss_pred CCCceeeccccccCCCCCCEEEEeeeccccccccE
Q 015173 232 AGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVHQ 266 (412)
Q Consensus 232 ~~~~v~W~~~l~~lp~~~~~~iiANEffDALPv~~ 266 (412)
+.--.|- |.....+|+||-+|-=||=|.
T Consensus 82 -aDl~~w~------p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 82 -ADLRTWK------PEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred -ccHhhcC------CCCccchhhhhhhhhhccccH
Confidence 1112342 322246899999998888664
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=89.14 E-value=1.7 Score=43.16 Aligned_cols=43 Identities=23% Similarity=0.457 Sum_probs=34.1
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+|+|+|+|+|.+|.-+.... |+ .+++-+|+||.--+.-+++..
T Consensus 113 ~ilDlGTGSG~iai~la~~~---~~----~~V~a~Dis~~Al~~A~~Na~ 155 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---PD----AEVIAVDISPDALALARENAE 155 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---cC----CeEEEEECCHHHHHHHHHHHH
Confidence 79999999999998886553 33 479999999987766666554
No 102
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=89.10 E-value=1.8 Score=44.04 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=36.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
...|||+|||+|+=.+-+|+.+... ...++|+-||+|...-+.-.+.|.
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~---~~~~~Y~plDIS~~~L~~a~~~L~ 125 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQ---KKSVDYYALDVSRSELQRTLAELP 125 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc---CCCceEEEEECCHHHHHHHHHhhh
Confidence 4589999999999999999999632 123589999999755544444454
No 103
>PRK14968 putative methyltransferase; Provisional
Probab=88.97 E-value=1.4 Score=39.62 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|.++..+++. ..+++.+|.|+..-+.-++++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~---------~~~v~~~D~s~~~~~~a~~~~~ 66 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN---------GKKVVGVDINPYAVECAKCNAK 66 (188)
T ss_pred CEEEEEccccCHHHHHHHhh---------cceEEEEECCHHHHHHHHHHHH
Confidence 38999999999998888654 1368999999988766555553
No 104
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=88.93 E-value=0.87 Score=44.76 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
|-+||.|+. .+.+-+|+|+|+|.|.+..-+..- +...++..||+.+.+.++-+++++-
T Consensus 33 aiLL~~~~~-------~~~~~~IlDlGaG~G~l~L~la~r-------~~~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 33 AILLAAFAP-------VPKKGRILDLGAGNGALGLLLAQR-------TEKAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred HHHHHhhcc-------cccCCeEEEecCCcCHHHHHHhcc-------CCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 456777654 223569999999999987655321 1225899999999999998887753
No 105
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=88.78 E-value=2.2 Score=42.99 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 148 WAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 148 ~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-|++.+++...+.+ +|+++|||+|-|+--.++- -+-+++-+|+.|.-.+.-+++...
T Consensus 150 lcl~~l~~~~~~g~-~vLDvG~GSGILaiaA~kl--------GA~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 150 LCLELLEKYVKPGK-RVLDVGCGSGILAIAAAKL--------GAKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp HHHHHHHHHSSTTS-EEEEES-TTSHHHHHHHHT--------TBSEEEEEESSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-EEEEeCCcHHHHHHHHHHc--------CCCeEEEecCCHHHHHHHHHHHHH
Confidence 34555555555543 9999999999998665432 112689999999988777776654
No 106
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=88.48 E-value=1.2 Score=43.84 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=44.5
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+..|....-+|+|.|.|+|.|+.-+++++.... +++-+|+-+...+.-+++|..
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G------~v~tyE~r~d~~k~A~~Nl~~ 141 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEG------HVTTYEIREDFAKTARENLSE 141 (256)
T ss_pred HHcCCCCCCEEEEcccCchHHHHHHHHhhCCCc------eEEEEEecHHHHHHHHHHHHH
Confidence 455665557999999999999999999875322 688999999999999998875
No 107
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=88.40 E-value=1.1 Score=45.45 Aligned_cols=42 Identities=19% Similarity=0.278 Sum_probs=31.9
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
..+|+|+|||.|.++.-+.+. ..+++-||+|+.+.+.-+++.
T Consensus 132 g~~ILDIGCG~G~~s~~La~~---------g~~V~GID~s~~~i~~Ar~~~ 173 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM---------GATVTGVDAVDKNVKIARLHA 173 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHH
Confidence 358999999999987755431 127999999999887766543
No 108
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=88.28 E-value=0.83 Score=42.76 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=33.4
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+|+|+|||.|.++..+.+.. |. .+++-+|+|+.+.+.-++++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~---~~----~~v~gid~s~~~~~~a~~~~~ 44 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH---PH----LQLHGYTISPEQAEVGRERIR 44 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHH
Confidence 69999999999988775542 32 478999999999877666653
No 109
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=88.07 E-value=0.7 Score=39.93 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.2
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.++++|||.|.++..+++. .|. .+++.||++|.+.+.-++++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~---~~~----~~v~~~E~~~~~~~~l~~~~~ 43 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK---GAE----GRVIAFEPLPDAYEILEENVK 43 (143)
T ss_pred CEEEccCCccHHHHHHHHh---CCC----CEEEEEecCHHHHHHHHHHHH
Confidence 4899999999997766543 232 379999999999987776654
No 110
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=88.01 E-value=1.4 Score=42.71 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=31.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|.++..+.+. .+ -+++-||+||...+.-++++.
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~---g~-----~~v~giDis~~~l~~A~~n~~ 163 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKL---GA-----KKVLAVDIDPQAVEAARENAE 163 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHc---CC-----CeEEEEECCHHHHHHHHHHHH
Confidence 58999999999987654321 11 158999999998887666654
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=87.96 E-value=0.88 Score=41.77 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (412)
..-+|+|+|||+|.++..+.+... ...+++.||+||.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~------~~~~v~~vDis~~~ 69 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVG------GKGRVIAVDLQPMK 69 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhC------CCceEEEEeccccc
Confidence 345899999999999888876542 12368999999854
No 112
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=87.50 E-value=2.2 Score=40.18 Aligned_cols=42 Identities=14% Similarity=0.182 Sum_probs=32.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
..+|+|+|||.|.++..+.+. . .+++.+|+|+.+.+.-++++
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---~------~~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---G------ADVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---C------CeEEEEcCCHHHHHHHHHHH
Confidence 468999999999998766542 1 26999999999876655544
No 113
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=87.38 E-value=1.2 Score=42.37 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=37.9
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+|+|||.+.|.=+.-+.+.+. +.-+++-||.+|...+..++.+..
T Consensus 48 ~vLEIGt~~GySal~la~~l~------~~g~i~tiE~~~~~~~~A~~~~~~ 92 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALP------EDGKITTIEIDPERAEIARENFRK 92 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTST------TTSEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEEeccccccHHHHHHHhhc------ccceEEEecCcHHHHHHHHHHHHh
Confidence 999999999999888877653 234899999999999998887753
No 114
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=87.33 E-value=1.7 Score=44.60 Aligned_cols=44 Identities=14% Similarity=0.318 Sum_probs=33.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
..+|+|+|||+|.++..+++.. +. .+++.||.|+.+.+.-+++.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~---~~----~~VtgVD~S~~mL~~A~~k~ 157 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHV---DA----KNVTILDQSPHQLAKAKQKE 157 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHhh
Confidence 3699999999999887776542 22 37999999999876655543
No 115
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=86.86 E-value=1.6 Score=45.72 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=31.4
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.++|||||+|.++..+.+. .|+ ..++-||+++.+.+.-.+++
T Consensus 125 ~vLEIGcGsG~~ll~lA~~---~P~----~~~iGIEI~~~~i~~a~~ka 166 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKN---NPN----KLFIGIEIHTPSIEQVLKQI 166 (390)
T ss_pred eEEEEcCcccHHHHHHHHh---CCC----CCEEEEECCHHHHHHHHHHH
Confidence 7999999999988776443 454 37999999988765544443
No 116
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=86.72 E-value=1.4 Score=41.70 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=27.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
-+|+++|||.|+|++.+.+. ..++-.=||+++..-
T Consensus 15 srVLDLGCGdG~LL~~L~~~--------k~v~g~GvEid~~~v 49 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE--------KQVDGYGVEIDPDNV 49 (193)
T ss_pred CEEEecCCCchHHHHHHHHh--------cCCeEEEEecCHHHH
Confidence 49999999999988766443 234678999998753
No 117
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=86.50 E-value=1.6 Score=43.26 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=32.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|.++..+++ .. .-+++-||+||...+.-++++.
T Consensus 161 ~~VLDvGcGsG~lai~aa~----~g----~~~V~avDid~~al~~a~~n~~ 203 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALK----LG----AAKVVGIDIDPLAVESARKNAE 203 (288)
T ss_pred CEEEEeCCChhHHHHHHHH----cC----CCeEEEEECCHHHHHHHHHHHH
Confidence 5899999999998866543 11 1269999999998877776654
No 118
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=86.36 E-value=2.1 Score=40.42 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=34.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+++|+|||+|.++...|... ..+++.||.++...+.-+++++
T Consensus 55 ~~vLDl~~GsG~l~l~~lsr~--------a~~V~~vE~~~~a~~~a~~Nl~ 97 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALSRY--------AAGATLLEMDRAVAQQLIKNLA 97 (199)
T ss_pred CEEEEcCCCccHHHHHHHHcC--------CCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999997654321 1279999999999988887775
No 119
>PLN02366 spermidine synthase
Probab=86.12 E-value=2.7 Score=42.45 Aligned_cols=73 Identities=16% Similarity=0.337 Sum_probs=49.2
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|..-++..---.|-|+|+.-.+.. .|.+-+|+++|+|.|.+++.+++. |.. .++.+||+++.+-+.-
T Consensus 64 Dg~~q~~~~de~~Y~e~l~h~~l~~-----~~~pkrVLiIGgG~G~~~rellk~----~~v---~~V~~VEiD~~Vi~~a 131 (308)
T PLN02366 64 DGVIQLTERDECAYQEMITHLPLCS-----IPNPKKVLVVGGGDGGVLREIARH----SSV---EQIDICEIDKMVIDVS 131 (308)
T ss_pred CCEeeecCccHHHHHHHHHHHHHhh-----CCCCCeEEEEcCCccHHHHHHHhC----CCC---CeEEEEECCHHHHHHH
Confidence 3444443222346777777644421 333458999999999998888654 321 3799999999988887
Q ss_pred Hhhcc
Q 015173 208 HHNLK 212 (412)
Q Consensus 208 k~~L~ 212 (412)
++.+.
T Consensus 132 r~~f~ 136 (308)
T PLN02366 132 KKFFP 136 (308)
T ss_pred HHhhh
Confidence 77663
No 120
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=85.83 E-value=2.1 Score=41.28 Aligned_cols=45 Identities=16% Similarity=0.108 Sum_probs=35.8
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+|+|+|+|.|.-+.-+.+.+. ..-+++-||.+|...+.-++++..
T Consensus 71 ~vLEiGt~~G~s~l~la~~~~------~~g~v~tiD~d~~~~~~A~~n~~~ 115 (234)
T PLN02781 71 NTLEIGVFTGYSLLTTALALP------EDGRITAIDIDKEAYEVGLEFIKK 115 (234)
T ss_pred EEEEecCcccHHHHHHHHhCC------CCCEEEEEECCHHHHHHHHHHHHH
Confidence 899999999997777766542 123799999999999888887753
No 121
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=85.48 E-value=2.8 Score=42.44 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=31.6
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
...++.-..-+|+|+|||+|.++..++.. .+. .++-||+|+.+...
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~---g~~-----~v~GiDpS~~ml~q 159 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH---GAK-----SLVGIDPTVLFLCQ 159 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc---CCC-----EEEEEcCCHHHHHH
Confidence 33444323358999999999998776542 221 58999999987543
No 122
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=85.27 E-value=2.6 Score=40.82 Aligned_cols=67 Identities=10% Similarity=0.328 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHH----cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 139 QMFGEMVGVWAMCLWEQ----MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~----~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+|-|-...+=..++.. .|...+..++|+|||+|+.- +-.| .....+++.||++|.+.+.-.+..++
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nf-------kfy~-~~p~~svt~lDpn~~mee~~~ks~~E 121 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLGKSGKGDVLEVGCGTGANF-------KFYP-WKPINSVTCLDPNEKMEEIADKSAAE 121 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhcccCccceEEecccCCCCc-------cccc-CCCCceEEEeCCcHHHHHHHHHHHhh
Confidence 34444444443333322 46667889999999999831 1111 11345899999999999998887754
No 123
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.01 E-value=5.6 Score=37.82 Aligned_cols=60 Identities=20% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCChhHHHHHHHHHHHH-----HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEec
Q 015173 133 TSPEVSQMFGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (412)
Q Consensus 133 TSpEIs~~FGe~Ia~~~~-----~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (412)
+.|+.-..|.+.++..-. .+......+..-+||++|+|.|.++..+++. +|++ ++++.|.
T Consensus 68 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~---~P~l----~~~v~Dl 132 (241)
T PF00891_consen 68 EDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARA---YPNL----RATVFDL 132 (241)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHH---STTS----EEEEEE-
T ss_pred hChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHH---CCCC----cceeecc
Confidence 345666777777665421 1223334444458999999999999998654 5654 7888877
No 124
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=84.91 E-value=2.3 Score=42.55 Aligned_cols=70 Identities=19% Similarity=0.307 Sum_probs=52.4
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 132 iTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
-|+-.-...+-||++.=.+..+ +.| -+|+-+|.|.|.+++-+|+... . -++++||+.|...+..++.|
T Consensus 53 q~~e~de~~yhEml~h~~~~ah---~~p--k~VLiiGgGdG~tlRevlkh~~----v---e~i~~VEID~~Vi~~ar~~l 120 (282)
T COG0421 53 QLTERDEFIYHEMLAHVPLLAH---PNP--KRVLIIGGGDGGTLREVLKHLP----V---ERITMVEIDPAVIELARKYL 120 (282)
T ss_pred hhccchhHHHHHHHHhchhhhC---CCC--CeEEEECCCccHHHHHHHhcCC----c---ceEEEEEcCHHHHHHHHHhc
Confidence 3455556677787766544332 444 3999999999999999987642 1 16999999999999999988
Q ss_pred cc
Q 015173 212 KC 213 (412)
Q Consensus 212 ~~ 213 (412)
..
T Consensus 121 ~~ 122 (282)
T COG0421 121 PE 122 (282)
T ss_pred cC
Confidence 54
No 125
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=84.88 E-value=2.5 Score=44.54 Aligned_cols=59 Identities=17% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+.+..++.+.. ......+|+|+|||+|+++.-+.+.. -+++-||+|+.+-+.-++++.
T Consensus 282 ~e~l~~~vl~~l---~~~~~~~VLDlgcGtG~~sl~la~~~---------~~V~gvD~s~~al~~A~~n~~ 340 (443)
T PRK13168 282 NQKMVARALEWL---DPQPGDRVLDLFCGLGNFTLPLARQA---------AEVVGVEGVEAMVERARENAR 340 (443)
T ss_pred HHHHHHHHHHHh---cCCCCCEEEEEeccCCHHHHHHHHhC---------CEEEEEeCCHHHHHHHHHHHH
Confidence 444555555433 22223589999999999988775432 268999999999887776654
No 126
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=84.81 E-value=1.5 Score=40.43 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=28.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
-+|+|+|||+|.++..+.+.. ...++-||+|+.+.+.-+
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~~--------~~~~~giD~s~~~i~~a~ 53 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDEK--------QVRGYGIEIDQDGVLACV 53 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhcc--------CCcEEEEeCCHHHHHHHH
Confidence 489999999999876554321 124688999998765543
No 127
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=84.76 E-value=2 Score=40.31 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=29.8
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+||||||.|.++..+. +.+|+. .|+-||++......-.+++
T Consensus 20 l~lEIG~G~G~~l~~~A---~~~Pd~----n~iGiE~~~~~v~~a~~~~ 61 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA---KRNPDI----NFIGIEIRKKRVAKALRKA 61 (195)
T ss_dssp EEEEET-TTSHHHHHHH---HHSTTS----EEEEEES-HHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHH---HHCCCC----CEEEEecchHHHHHHHHHH
Confidence 79999999999887764 346653 7999999887665544433
No 128
>PRK01581 speE spermidine synthase; Validated
Probab=84.54 E-value=3.3 Score=43.10 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
-+|=|+|+.=.+. ....| -+|+++|+|.|..++.+|+. +. ..++.+||++|.+-+.-++
T Consensus 134 ~iYHE~Lvhp~m~---~h~~P--krVLIIGgGdG~tlrelLk~----~~---v~~It~VEIDpeVIelAr~ 192 (374)
T PRK01581 134 QIYHEALVHPIMS---KVIDP--KRVLILGGGDGLALREVLKY----ET---VLHVDLVDLDGSMINMARN 192 (374)
T ss_pred HHHHHHHHHHHHH---hCCCC--CEEEEECCCHHHHHHHHHhc----CC---CCeEEEEeCCHHHHHHHHh
Confidence 4688888774432 23334 49999999999988888764 21 1279999999999887775
No 129
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=84.38 E-value=1.3 Score=41.96 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=27.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (412)
.-+|+|+|||+|.++.-+++... ....++-||++|
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~------~~~~V~aVDi~~ 86 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIG------DKGRVIACDILP 86 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcC------CCceEEEEeccc
Confidence 35899999999999888876542 123689999998
No 130
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=84.32 E-value=2.3 Score=41.22 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.4
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
.+||||+|+|++...+ .+++|+. .|+-||+...--..
T Consensus 51 i~lEIGfG~G~~l~~~---A~~nP~~----nfiGiEi~~~~v~~ 87 (227)
T COG0220 51 IVLEIGFGMGEFLVEM---AKKNPEK----NFLGIEIRVPGVAK 87 (227)
T ss_pred EEEEECCCCCHHHHHH---HHHCCCC----CEEEEEEehHHHHH
Confidence 7999999999987776 4457764 69999997654433
No 131
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=83.76 E-value=3.4 Score=40.51 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=39.3
Q ss_pred HHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 154 EQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 154 ~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..++....-+|+|.|.|+|.|...+++.+... =+++-.|..+...+.-++.+..
T Consensus 34 ~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~------G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 34 MRLDIRPGSRVLEAGTGSGSLTHALARAVGPT------GHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHTT--TT-EEEEE--TTSHHHHHHHHHHTTT------SEEEEEESSHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEecCCcHHHHHHHHHHhCCC------eEEEccccCHHHHHHHHHHHHH
Confidence 34565444699999999999999999998522 2688899999998888887764
No 132
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=83.71 E-value=3.4 Score=41.39 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=33.8
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|+++.-+.+. ..+++-||.|+...+.-++++.
T Consensus 175 ~~VLDl~cG~G~~sl~la~~---------~~~V~gvD~s~~av~~A~~n~~ 216 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATP---------GMQLTGIEISAEAIACAKQSAA 216 (315)
T ss_pred CEEEEccCCCCHHHHHHHhc---------CCEEEEEeCCHHHHHHHHHHHH
Confidence 48999999999998777541 1268999999999888777664
No 133
>PRK06922 hypothetical protein; Provisional
Probab=83.61 E-value=2.2 Score=47.49 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=33.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.+|+|+|||+|.++..+.+. +| ..+++-||+|+.+.+..++++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~---~P----~~kVtGIDIS~~MLe~Ararl 462 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE---TE----DKRIYGIDISENVIDTLKKKK 462 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh---CC----CCEEEEEECCHHHHHHHHHHh
Confidence 59999999999987665443 34 348999999999877766654
No 134
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=83.48 E-value=5 Score=40.57 Aligned_cols=58 Identities=14% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 147 VWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 147 ~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.-|++.+++...+. -+++++|||+|-|+--.+.- .+-+++-+++-|.--+.-+++...
T Consensus 150 ~lcL~~Le~~~~~g-~~vlDvGcGSGILaIAa~kL--------GA~~v~g~DiDp~AV~aa~eNa~~ 207 (300)
T COG2264 150 SLCLEALEKLLKKG-KTVLDVGCGSGILAIAAAKL--------GAKKVVGVDIDPQAVEAARENARL 207 (300)
T ss_pred HHHHHHHHHhhcCC-CEEEEecCChhHHHHHHHHc--------CCceEEEecCCHHHHHHHHHHHHH
Confidence 34566666666654 59999999999998776432 233689999988777766666654
No 135
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=83.30 E-value=2.5 Score=44.53 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.7
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
-+|+|+|||.|.++..+.+.. -+++-||.|+.+.+.-+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~~---------~~v~giD~s~~~l~~a~ 76 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKKA---------GQVIALDFIESVIKKNE 76 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhhC---------CEEEEEeCCHHHHHHHH
Confidence 489999999999999876541 16899999999886543
No 136
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=83.08 E-value=3.1 Score=38.12 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH---HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 143 EMVGVWAMCLWE---QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 143 e~Ia~~~~~~w~---~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|.|+.+.-. ....-...+|+|+|||.|-..--+... ....++++-|..+.+...+ .++.
T Consensus 25 ~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~-------~~~~~Vv~TD~~~~l~~l~-~Ni~ 89 (173)
T PF10294_consen 25 LVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL-------FGAARVVLTDYNEVLELLR-RNIE 89 (173)
T ss_dssp HHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT--------T-SEEEEEE-S-HHHHHH-HHHH
T ss_pred HHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc-------cCCceEEEeccchhhHHHH-HHHH
Confidence 445666655321 111123469999999999655444332 1233799999999554444 4443
No 137
>PTZ00146 fibrillarin; Provisional
Probab=83.04 E-value=2.6 Score=42.43 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=33.2
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
+..+......+|+|+|||+|++...+.+.+... =.++-||+|+.+.
T Consensus 125 ~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~------G~VyAVD~s~r~~ 170 (293)
T PTZ00146 125 VANIPIKPGSKVLYLGAASGTTVSHVSDLVGPE------GVVYAVEFSHRSG 170 (293)
T ss_pred cceeccCCCCEEEEeCCcCCHHHHHHHHHhCCC------CEEEEEECcHHHH
Confidence 334443334589999999999999998776321 1689999998754
No 138
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=83.02 E-value=7.7 Score=38.32 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=35.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+-+|+++|+|.||-+.-+...+. . ..+|+.||.|+.+.+.=+..+.
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~---~---~~~~~~vd~s~~~~~l~~~l~~ 79 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWP---S---LKEYTCVDRSPEMLELAKRLLR 79 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhc---C---ceeeeeecCCHHHHHHHHHHHh
Confidence 45899999999997766655543 2 2379999999999987776554
No 139
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=81.70 E-value=3.6 Score=42.13 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=33.2
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+++|+|||+|+++.-+-+.. . +++.||.|+.+.+..++++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~-------~--~v~~vE~~~~av~~a~~n~~ 240 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF-------R--RVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred cEEEEeccccHHHHHHHHhC-------C--EEEEEECCHHHHHHHHHHHH
Confidence 69999999999998544331 1 69999999999988887764
No 140
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=81.65 E-value=7.3 Score=39.12 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 141 FGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 141 FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+|.=..-+-.+.+.++.-+..+|+|||||-|.||.-..+. + .++++-|..|+...+.-++++.+
T Consensus 53 L~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~---y-----~v~V~GvTlS~~Q~~~~~~r~~~ 117 (283)
T COG2230 53 LEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEE---Y-----GVTVVGVTLSEEQLAYAEKRIAA 117 (283)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHH---c-----CCEEEEeeCCHHHHHHHHHHHHH
Confidence 34444444555667777655679999999999998766443 2 24789999999988887776654
No 141
>PRK04148 hypothetical protein; Provisional
Probab=80.61 E-value=5.1 Score=35.84 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 144 MVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 144 ~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.||.|+.+.+... ...+|+|+|+|.|.-.+..|... ..+++-||++|...+.-++
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~--------G~~ViaIDi~~~aV~~a~~ 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKES--------GFDVIVIDINEKAVEKAKK 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHC--------CCEEEEEECCHHHHHHHHH
Confidence 3566665544221 23589999999997333344321 1279999999996555443
No 142
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=80.50 E-value=3.2 Score=42.38 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCC------CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 146 GVWAMCLWEQMGQP------NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 146 a~~~~~~w~~~g~p------~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
=+|+-+++-+.-.+ ...+|+|||||+|- |+..+.+.... .|+.||+|+.--+.-+++.
T Consensus 42 NNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGG---DL~Kw~~~~i~-----~~vg~Dis~~si~ea~~Ry 105 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGG---DLQKWQKAKIK-----HYVGIDISEESIEEARERY 105 (331)
T ss_dssp HHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTT---THHHHHHTT-S-----EEEEEES-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhccCCCCeEEEecCCCch---hHHHHHhcCCC-----EEEEEeCCHHHHHHHHHHH
Confidence 34555555443333 56899999999998 99888764333 6899999987766655555
No 143
>PLN02823 spermine synthase
Probab=80.37 E-value=5.9 Score=40.59 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=48.6
Q ss_pred CCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 129 GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
|+.-++..---+|=|+++.-.+.. .|.+-+|+.+|.|.|.+++.+|+.. . ..++.+||+.|.+-+.-+
T Consensus 77 g~~qs~~~de~~YhE~l~h~~l~~-----~~~pk~VLiiGgG~G~~~re~l~~~----~---~~~v~~VEiD~~vv~lar 144 (336)
T PLN02823 77 GKMQSAEADEFVYHESLVHPALLH-----HPNPKTVFIMGGGEGSTAREVLRHK----T---VEKVVMCDIDQEVVDFCR 144 (336)
T ss_pred CccccccchHHHHHHHHHhHHHhh-----CCCCCEEEEECCCchHHHHHHHhCC----C---CCeEEEEECCHHHHHHHH
Confidence 444433222235777776544321 2333489999999999999887641 1 126999999999999888
Q ss_pred hhcc
Q 015173 209 HNLK 212 (412)
Q Consensus 209 ~~L~ 212 (412)
+.+.
T Consensus 145 ~~~~ 148 (336)
T PLN02823 145 KHLT 148 (336)
T ss_pred Hhcc
Confidence 8764
No 144
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=79.90 E-value=4.8 Score=39.88 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
..-+|+++|||+|+++..+++. +|+ ++++.+|. |...+.-++++
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~---~p~----~~~~~~D~-~~~~~~a~~~~ 192 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKH---FPE----LDSTILNL-PGAIDLVNENA 192 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHH---CCC----CEEEEEec-HHHHHHHHHHH
Confidence 3459999999999999888765 343 47888997 44444444444
No 145
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=79.84 E-value=3.8 Score=44.45 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
.|+++|-..++..--.........|.=+|||||-|...+|+..+... .+++.++||.+|.--
T Consensus 347 ~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~---RkVklyavEKNPNAi 408 (649)
T KOG0822|consen 347 QYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETD---RKVKLYAVEKNPNAI 408 (649)
T ss_pred HHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhc---CceEEEEEecCcchh
Confidence 56666655544432111111246788999999999999999987532 478999999999753
No 146
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=79.77 E-value=4.6 Score=41.47 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.|.+..++.+.... . +-+++|++||+|+++.-+.+.. . +++-||.|+...+..++++.
T Consensus 192 ~e~l~~~v~~~~~~--~--~~~vLDl~~G~G~~sl~la~~~-------~--~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 192 NEKMLEWALDATKG--S--KGDLLELYCGNGNFTLALARNF-------R--RVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred HHHHHHHHHHHhhc--C--CCeEEEEeccccHHHHHHHhhC-------C--EEEEEECCHHHHHHHHHHHH
Confidence 34445555443321 1 1369999999999998554432 1 68999999999988887764
No 147
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=78.31 E-value=6.3 Score=41.16 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=34.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|+++.-+.+.. -+++-||+|+.+.+.-++++.
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~---------~~V~~vE~~~~av~~a~~n~~ 335 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQA---------KSVVGIEVVPESVEKAQQNAE 335 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhC---------CEEEEEEcCHHHHHHHHHHHH
Confidence 489999999999998865431 168999999999888777664
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=77.90 E-value=5.2 Score=41.24 Aligned_cols=42 Identities=10% Similarity=0.040 Sum_probs=33.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|+++.-+... ..+++.||+|+...+.-+++++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~---------~~~v~~vE~~~~av~~a~~N~~ 276 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP---------DTQLTGIEIESEAIACAQQSAQ 276 (374)
T ss_pred CEEEEccCCccHHHHHHhhc---------CCeEEEEECCHHHHHHHHHHHH
Confidence 38999999999998776521 1268999999999888777664
No 149
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=77.24 E-value=8.8 Score=38.04 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCC
Q 015173 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~ 221 (412)
.++=.+-+-.+.++++.-..-+|+|||||-|.++.-+.+.. .++++-|..|+.-.+.-++++.... +.+
T Consensus 44 e~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--------g~~v~gitlS~~Q~~~a~~~~~~~g--l~~- 112 (273)
T PF02353_consen 44 EEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--------GCHVTGITLSEEQAEYARERIREAG--LED- 112 (273)
T ss_dssp HHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCST--SSS-
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--------CcEEEEEECCHHHHHHHHHHHHhcC--CCC-
Confidence 44444455556666776555699999999999999887653 2478999999887776665554311 001
Q ss_pred cccceeeccCCCCceeeccccccCCCCCCEEEEeeecccccccc
Q 015173 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAHEFYDALPVH 265 (412)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~~l~~lp~~~~~~iiANEffDALPv~ 265 (412)
...|.. .+..+++..+. -|++-|.|-.++..
T Consensus 113 -----------~v~v~~-~D~~~~~~~fD-~IvSi~~~Ehvg~~ 143 (273)
T PF02353_consen 113 -----------RVEVRL-QDYRDLPGKFD-RIVSIEMFEHVGRK 143 (273)
T ss_dssp -----------TEEEEE-S-GGG---S-S-EEEEESEGGGTCGG
T ss_pred -----------ceEEEE-eeccccCCCCC-EEEEEechhhcChh
Confidence 112322 12344444433 47888888888643
No 150
>PRK03612 spermidine synthase; Provisional
Probab=77.09 E-value=3.3 Score=44.71 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
..|.|+++.-.+ .. .|.+-+|+++|+|.|.++..+++. +.. -++++||++|.+.+..++
T Consensus 281 ~~y~e~l~~~~l---~~--~~~~~rVL~IG~G~G~~~~~ll~~----~~v---~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 281 YRYHEALVHPAM---AA--SARPRRVLVLGGGDGLALREVLKY----PDV---EQVTLVDLDPAMTELART 339 (521)
T ss_pred HHHHHHHHHHHH---hh--CCCCCeEEEEcCCccHHHHHHHhC----CCc---CeEEEEECCHHHHHHHHh
Confidence 356777653222 11 233458999999999999888753 221 279999999999999887
No 151
>PLN02476 O-methyltransferase
Probab=76.85 E-value=6.7 Score=39.21 Aligned_cols=45 Identities=11% Similarity=0.007 Sum_probs=36.8
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+|+|+|.|.|.-+.-+.+.+.. .-+++-+|.+|...+..++.++.
T Consensus 121 ~VLEIGT~tGySal~lA~al~~------~G~V~TiE~d~e~~~~Ar~n~~~ 165 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLPE------SGCLVACERDSNSLEVAKRYYEL 165 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCCC------CCEEEEEECCHHHHHHHHHHHHH
Confidence 8999999999999888776532 12589999999999888887753
No 152
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=76.60 E-value=3.6 Score=41.62 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=28.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHH
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQK 205 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~ 205 (412)
-+|+|+|||+|.++..+++. .+. .++-||+|+.+..
T Consensus 124 ~~VLDIGCG~G~~~~~la~~---g~~-----~V~GiD~S~~~l~ 159 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGA---GAK-----LVVGIDPSQLFLC 159 (322)
T ss_pred CEEEEeccCCcHHHHHHHHc---CCC-----EEEEEcCCHHHHH
Confidence 48999999999999877653 222 4899999997653
No 153
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=74.25 E-value=4.7 Score=37.59 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=34.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+++|++||+|.++.-.+..-. -+++.||.++...+.-++++.
T Consensus 51 ~~vLDLfaGsG~lglea~srga--------~~v~~vE~~~~a~~~~~~N~~ 93 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA--------KVAFLEEDDRKANQTLKENLA 93 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC--------CEEEEEeCCHHHHHHHHHHHH
Confidence 4899999999999988765321 168999999998888777664
No 154
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=73.70 E-value=16 Score=37.03 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+++|++|-||.|.- ||+.+.+.|.. ..++.|+|.||..-+.=++.+++
T Consensus 135 ~pvrIlDIAaG~GRY---vlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~ 183 (311)
T PF12147_consen 135 RPVRILDIAAGHGRY---VLDALEKHPER--PDSILLRDYSPINVEKGRALIAE 183 (311)
T ss_pred CceEEEEeccCCcHH---HHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence 358999999999995 55555555543 23799999999997766665543
No 155
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=72.29 E-value=12 Score=37.58 Aligned_cols=66 Identities=9% Similarity=0.023 Sum_probs=41.3
Q ss_pred eeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 131 FITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 131 FiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
|+++..+.+. ||..++++. +....-.|+|+|||+|+++.-... . ..+++-+|+++.+.+.-+++
T Consensus 160 ~~~~~~l~~~----la~~~~~l~---~~~~g~~vLDp~cGtG~~lieaa~----~-----~~~v~g~Di~~~~~~~a~~n 223 (329)
T TIGR01177 160 FFKPGSMDPK----LARAMVNLA---RVTEGDRVLDPFCGTGGFLIEAGL----M-----GAKVIGCDIDWKMVAGARIN 223 (329)
T ss_pred ccCCCCCCHH----HHHHHHHHh---CCCCcCEEEECCCCCCHHHHHHHH----h-----CCeEEEEcCCHHHHHHHHHH
Confidence 5555555554 444444322 222334899999999998644321 1 13689999999987776666
Q ss_pred cc
Q 015173 211 LK 212 (412)
Q Consensus 211 L~ 212 (412)
++
T Consensus 224 l~ 225 (329)
T TIGR01177 224 LE 225 (329)
T ss_pred HH
Confidence 64
No 156
>KOG2901 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.25 E-value=0.03 Score=57.01 Aligned_cols=149 Identities=7% Similarity=-0.212 Sum_probs=90.2
Q ss_pred ccHHHHHHHhhcCCCCCccCCCCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcC-----------CCCCcEEEEEcC
Q 015173 101 ISVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMG-----------QPNRVNLVELGP 169 (412)
Q Consensus 101 Isf~dFM~~aLY~P~~GYY~~~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g-----------~p~~l~IvEiGa 169 (412)
++-+.||++.++.+.-+||.=..-.+-.+||.|.+++++.|++.|..|.-.-|..++ ..-...+||+-
T Consensus 68 ~~rdvfg~~gdfitSpeisq~fgeligvw~~~ew~~~g~~~~~qLvelgpgrgtl~~dvl~~~~kf~~~~vs~hLve~S- 146 (415)
T KOG2901|consen 68 MNRDVFGAKGDFITSPEISQIFGEMIGVWTVSEWEQMGRPERFQLVELGPGRGTLMADVLRVLTKFKDEDLSVHLVEVS- 146 (415)
T ss_pred ccHHHhhcccCccCCccHHHHHHHhhheeEEEehhhhCCccceeEEEeccchhHHHHHHHHHHHHhcCceeeEEEEEec-
Confidence 455699999999999999976554566799999999999999888666544443333 22345666665
Q ss_pred CcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh-hcccccccCcCCcccceeeccCCCCceeeccccccCCCC
Q 015173 170 GRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH-NLKCMDENNANDNVEERTISSLAGTPVSWHAALEQVPSG 248 (412)
Q Consensus 170 G~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~-~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~~l~~lp~~ 248 (412)
+.|..++ ..++.++.++.|.++.-.-+. .+..+...+.+-..++ ....++|+-+.-.+++.
T Consensus 147 -------~~ls~lq-----~~~l~~~~~~~s~~~~~tt~sg~~~~w~~sl~dvp~g~------s~iiahef~DalpVhkf 208 (415)
T KOG2901|consen 147 -------PALSKLQ-----AQNLCCTDESLSEYKKGSTLSGTPIHWHRTLQDVPSGF------TLIIAHEFFDALPVHQF 208 (415)
T ss_pred -------HhHHHHh-----hcceeEeeccHHHHhhccccccCchhcccChhhcCCce------EEEEhHHhhhcCcchhh
Confidence 2333332 235688999888732211110 0001111122222222 23355787554444443
Q ss_pred CCEEEEeeeccccccccEEEecCCee
Q 015173 249 FPTIIVAHEFYDALPVHQFQKTTRGW 274 (412)
Q Consensus 249 ~~~~iiANEffDALPv~~f~~~~~~w 274 (412)
. ++++|=.||++++.++...
T Consensus 209 -q-----k~~~~w~eV~vd~~~d~~~ 228 (415)
T KOG2901|consen 209 -Q-----KSTRGWCEVMVDVGEDSKF 228 (415)
T ss_pred -c-----cCCCCcceeEEeccCcccE
Confidence 2 8999999999998875443
No 157
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=72.14 E-value=10 Score=39.76 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.-+|+|+|||.|.++..+++.. + ..+++-+|.|+.+.+..++++.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---~----~~~v~a~D~s~~~l~~~~~n~~ 289 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---P----QAQVVALDIDAQRLERVRENLQ 289 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---C----CCEEEEEeCCHHHHHHHHHHHH
Confidence 3589999999999998887654 2 1379999999998888777764
No 158
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=72.04 E-value=11 Score=36.51 Aligned_cols=52 Identities=13% Similarity=0.131 Sum_probs=35.2
Q ss_pred HHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh-hhHH
Q 015173 146 GVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP-TLQK 205 (412)
Q Consensus 146 a~~~~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp-~Lr~ 205 (412)
|.-+....+..+.. ....++++|||+|.++.-+++. . .-+++-||+|+ .|..
T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~----g----a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK----G----AKEVYGVDVGYNQLAE 113 (228)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc----C----CCEEEEEeCCHHHHHH
Confidence 33444555555542 3458999999999999877653 1 12689999999 4444
No 159
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.39 E-value=6.8 Score=40.79 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=25.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecCh
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSP 201 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp 201 (412)
...||||||+|.|++=|-..+... +.+ -+++||..-
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~-~~~---l~vlvdR~s 219 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQ-NVY---LFVLVDRKS 219 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccc-cEE---EEEeecccc
Confidence 689999999999999887776432 111 145677544
No 160
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=70.72 E-value=7 Score=41.95 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=56.4
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
+|+|||+.+|+.+.-++|.. .|.. +|+.-=||+|.|.....+++++.. .++.++-.|+.+.-...-
T Consensus 165 ~GEfyTP~~v~~liv~~l~~----------~~~~-~i~DpacGsgg~l~~a~~~~~~~~---~~~~~yGqE~~~~t~~l~ 230 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP----------EPRN-SIYDPACGSGGMLLQAAKYLKRHQ---DEIFIYGQEINDTTYRLA 230 (489)
T ss_pred CCccCChHHHHHHHHHHcCC----------CCCC-eecCCCCchhHHHHHHHHHHHhhc---cceeEEEEeCCHHHHHHH
Confidence 49999999999887776643 2222 899999999999999999986432 267899999999888887
Q ss_pred Hhhcc
Q 015173 208 HHNLK 212 (412)
Q Consensus 208 k~~L~ 212 (412)
+..+.
T Consensus 231 ~mN~~ 235 (489)
T COG0286 231 KMNLI 235 (489)
T ss_pred HHHHH
Confidence 76664
No 161
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=69.91 E-value=3.6 Score=40.60 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCCeeCCCChh---HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcC-----ccccceEEEEe
Q 015173 127 AEGDFITSPEVS---QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKN-----FTESLHIHLVE 198 (412)
Q Consensus 127 ~~GDFiTSpEIs---~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~-----~~~~l~y~iVE 198 (412)
.-+|+|++++=+ ..+.-+.+..+.+-|..... ..+.|.|+|-|+|....-+++.+..... ...++.|.-+|
T Consensus 23 ~fdd~Y~~~~~gl~Et~~vf~~gn~L~~~~~~~~~-~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e 101 (252)
T COG4121 23 LFDDVYFLKSNGLNESMPVFAIGNGLLQNWPDLSQ-EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIE 101 (252)
T ss_pred hhcccccccccchhhhHHHHHhccCcccccccccc-cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEE
Confidence 358888887631 23344555554444544433 3589999999999988888888765432 45678899999
Q ss_pred cChhhH
Q 015173 199 CSPTLQ 204 (412)
Q Consensus 199 ~Sp~Lr 204 (412)
..|--+
T Consensus 102 ~~P~~~ 107 (252)
T COG4121 102 LDPFSP 107 (252)
T ss_pred eCCCCh
Confidence 887544
No 162
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=68.30 E-value=14 Score=35.79 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=38.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|||.+.|.=+.-+++.+.. .-+++-||.+|.+.+.-+++++.
T Consensus 61 k~iLEiGT~~GySal~mA~~l~~------~g~l~tiE~~~e~~~~A~~n~~~ 106 (219)
T COG4122 61 KRILEIGTAIGYSALWMALALPD------DGRLTTIERDEERAEIARENLAE 106 (219)
T ss_pred ceEEEeecccCHHHHHHHhhCCC------CCeEEEEeCCHHHHHHHHHHHHH
Confidence 38999999999988888776532 23899999999999999998864
No 163
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=66.17 E-value=13 Score=37.82 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+.+++|||+|+|-++.-+... .+ ..+++-+|++|...+.-++++..
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~---~~----~~~~~atDId~~Al~~A~~Nv~~ 160 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVH---EY----GWRFVGSDIDPQALASAQAIISA 160 (321)
T ss_pred CCceEEEecCCccHHHHHHHhh---CC----CCEEEEEeCCHHHHHHHHHHHHh
Confidence 3579999999999655544321 22 24799999999998888877764
No 164
>PLN03075 nicotianamine synthase; Provisional
Probab=66.04 E-value=25 Score=35.59 Aligned_cols=46 Identities=13% Similarity=0.234 Sum_probs=34.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|+|.|-+..=++-.- .+| ..+++-+|++|...+..++.+.
T Consensus 125 ~~VldIGcGpgpltaiilaa~-~~p----~~~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 125 TKVAFVGSGPLPLTSIVLAKH-HLP----TTSFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred CEEEEECCCCcHHHHHHHHHh-cCC----CCEEEEEeCCHHHHHHHHHHhh
Confidence 489999999997766554321 233 3479999999999998887663
No 165
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.01 E-value=15 Score=34.77 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=34.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-.++++|||+|+++-++.+. .| +.+++-||.++...+.=+++..
T Consensus 36 ~~l~DIGaGtGsi~iE~a~~---~p----~~~v~AIe~~~~a~~~~~~N~~ 79 (187)
T COG2242 36 DRLWDIGAGTGSITIEWALA---GP----SGRVIAIERDEEALELIERNAA 79 (187)
T ss_pred CEEEEeCCCccHHHHHHHHh---CC----CceEEEEecCHHHHHHHHHHHH
Confidence 48999999999999998733 22 3479999999887776665554
No 166
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=65.55 E-value=11 Score=37.61 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHhcCCcc---cHHHHHHHhhcCCCCCccCCCC---CCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHc
Q 015173 83 ESELVKHLKGIIKFRGGPI---SVAEYMEEVLTNPKAGFYINRD---VFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQM 156 (412)
Q Consensus 83 ~~~L~~~i~~~I~~~~GpI---sf~dFM~~aLY~P~~GYY~~~~---~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~ 156 (412)
+++-.+.|..-++.. +.+ .+..++...|-. +|++.+ .+|+++=|+=|.+- |.++|..-- ..|
T Consensus 22 D~ET~~FL~~S~e~S-~~~~~ql~~~l~~~~L~~----f~S~T~iNG~LgRG~MFvfS~~Q---~~~LL~~~~-~~~--- 89 (265)
T PF05219_consen 22 DEETQEFLDRSYEKS-DWFFTQLWHSLASSILSW----FMSKTDINGILGRGSMFVFSEEQ---FRKLLRISG-FSW--- 89 (265)
T ss_pred CHHHHHHHHHhHHhH-HHHHHHHHHHHHHHHHHH----HHhHHhHhhhhcCCcEEEecHHH---HHHHhhhhc-cCC---
Confidence 455556665555554 321 233344444532 344322 46888889877542 222222110 011
Q ss_pred CCC--CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 157 GQP--NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 157 g~p--~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.| ...++++||||.|.-...+-..++ +++--|+|+.||.+-++
T Consensus 90 -~~~~~~~~lLDlGAGdG~VT~~l~~~f~---------~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 90 -NPDWKDKSLLDLGAGDGEVTERLAPLFK---------EVYATEASPPMRWRLSK 134 (265)
T ss_pred -CCcccCCceEEecCCCcHHHHHHHhhcc---------eEEeecCCHHHHHHHHh
Confidence 12 345899999999997776643322 37788999999877554
No 167
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=64.42 E-value=14 Score=35.93 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=49.2
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|+.-++-.--..+-|+|+...+.. .|.+-+|+-||.|.|.+++.+++. +.. .++.+||+.|...+..
T Consensus 49 dg~~q~~e~de~~y~e~l~h~~~~~-----~~~p~~VLiiGgG~G~~~~ell~~----~~~---~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 49 DGDVQLSERDEFIYHEMLVHPPLLL-----HPNPKRVLIIGGGDGGTARELLKH----PPV---ESITVVEIDPEVVELA 116 (246)
T ss_dssp TTEEEEETTTHHHHHHHHHHHHHHH-----SSST-EEEEEESTTSHHHHHHTTS----TT----SEEEEEES-HHHHHHH
T ss_pred CCeEEEEEechHHHHHHHhhhHhhc-----CCCcCceEEEcCCChhhhhhhhhc----CCc---ceEEEEecChHHHHHH
Confidence 4554444333357788887654432 233459999999999998888643 211 2799999999999998
Q ss_pred Hhhcc
Q 015173 208 HHNLK 212 (412)
Q Consensus 208 k~~L~ 212 (412)
++.+.
T Consensus 117 ~~~f~ 121 (246)
T PF01564_consen 117 RKYFP 121 (246)
T ss_dssp HHHTH
T ss_pred HHhch
Confidence 88764
No 168
>PLN02672 methionine S-methyltransferase
Probab=63.90 E-value=9.3 Score=44.98 Aligned_cols=45 Identities=20% Similarity=0.197 Sum_probs=36.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
.+|+|+|||+|.++..+...+ |. .+++.||+||..-+.-++++..
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---~~----~~v~avDis~~Al~~A~~Na~~ 164 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---LP----SKVYGLDINPRAVKVAWINLYL 164 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---CC----CEEEEEECCHHHHHHHHHHHHH
Confidence 489999999999999886643 22 2799999999999888877754
No 169
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=63.59 E-value=26 Score=33.42 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=35.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMD 215 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~ 215 (412)
.-++|||||+|--..-+...+- ...-|...+++|.-.+.-+++.+++.
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~------~~~~~latDiNp~A~~~Tl~TA~~n~ 92 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIG------PQALYLATDINPEALEATLETARCNR 92 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcC------CCceEEEecCCHHHHHHHHHHHHhcC
Confidence 4689999999985554433322 33468999999999999888888754
No 170
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=62.85 E-value=25 Score=33.52 Aligned_cols=39 Identities=18% Similarity=0.030 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 159 PNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 159 p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
+..-+|+++|||.|.-|.-+.+ .-.+++-||+||.-.+.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~---------~G~~V~avD~s~~Ai~~ 74 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE---------QGHEVLGVELSELAVEQ 74 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHh---------CCCeEEEEccCHHHHHH
Confidence 3345999999999997776643 12379999999986664
No 171
>PRK00536 speE spermidine synthase; Provisional
Probab=62.28 E-value=24 Score=35.03 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+|=|||+-=.+. -.|.+-+|+=+|+|.|-.++.||++ |+ +++|||+.+..-+.-|+.|-
T Consensus 57 iYHEmLvHppl~-----~h~~pk~VLIiGGGDGg~~REvLkh----~~-----~v~mVeID~~Vv~~~k~~lP 115 (262)
T PRK00536 57 IESELLAHMGGC-----TKKELKEVLIVDGFDLELAHQLFKY----DT-----HVDFVQADEKILDSFISFFP 115 (262)
T ss_pred hHHHHHHHHHHh-----hCCCCCeEEEEcCCchHHHHHHHCc----CC-----eeEEEECCHHHHHHHHHHCH
Confidence 778888765442 2344458999999999999999876 32 89999999999999888774
No 172
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=61.19 E-value=21 Score=37.39 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=36.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|..+..+++.+. .-+++-+|+|+...+..+++++
T Consensus 240 ~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~~l~~~~~n~~ 283 (426)
T TIGR00563 240 ETILDACAAPGGKTTHILELAP-------QAQVVALDIHEHRLKRVYENLK 283 (426)
T ss_pred CeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHHHHHHHHHHHH
Confidence 5899999999999998887642 2378999999998888777775
No 173
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=60.56 E-value=19 Score=37.39 Aligned_cols=69 Identities=9% Similarity=0.121 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCC-CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 139 QMFGEMVGVWAMCLWEQMGQP-NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p-~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
+.|.+-|++-+.+.|.....+ ..++|+|+-+|+|.++.-.+... +.. -+++.+|++|...+.-+++++.
T Consensus 22 ~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~---~ga---~~Vv~nD~n~~Av~~i~~N~~~ 91 (374)
T TIGR00308 22 MQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEI---EGV---REVFANDINPKAVESIKNNVEY 91 (374)
T ss_pred hhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhC---CCC---CEEEEEeCCHHHHHHHHHHHHH
Confidence 345555666666555443322 24799999999999987765543 111 2699999999999998888854
No 174
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=60.51 E-value=12 Score=40.41 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=25.5
Q ss_pred CCCCcEEEEehhHHHHHHHHHHHhccCCcEEEE
Q 015173 314 LEKLEHIEVCAKAMELTGAMAKRIGSDGGGALI 346 (412)
Q Consensus 314 ~~~g~~~Ei~p~a~~~l~~la~~l~~~~G~~Li 346 (412)
+.+|-.+++..+...+.+.+.+.+.+++++-++
T Consensus 452 Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 452 LKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred cCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 456779999999999999988888876445443
No 175
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=60.35 E-value=15 Score=35.79 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=36.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||.|..+..+.+.+... -.++-+|+|+..-+.-++++..
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~------g~v~a~D~~~~~l~~~~~n~~~ 118 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNE------GAIVANEFSKSRTKVLIANINR 118 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCC------CEEEEEcCCHHHHHHHHHHHHH
Confidence 489999999999999887765321 2689999999988777776653
No 176
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=60.34 E-value=23 Score=36.83 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=47.3
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
..=|+-+- +.+.+-|...+.+.+... .+ ..+|+|++||+|.++.-+.... + ..+++.+|++|...+.-
T Consensus 30 ~~vFyqp~---~~~nrdl~~~v~~~~~~~-~~-~~~vLDl~aGsG~~~l~~a~~~---~----~~~V~a~Din~~Av~~a 97 (382)
T PRK04338 30 APVFYNPR---MELNRDISVLVLRAFGPK-LP-RESVLDALSASGIRGIRYALET---G----VEKVTLNDINPDAVELI 97 (382)
T ss_pred CCeeeCcc---ccchhhHHHHHHHHHHhh-cC-CCEEEECCCcccHHHHHHHHHC---C----CCEEEEEeCCHHHHHHH
Confidence 34465542 344555555555444322 01 2489999999999987665432 1 12699999999998887
Q ss_pred Hhhccc
Q 015173 208 HHNLKC 213 (412)
Q Consensus 208 k~~L~~ 213 (412)
+++++.
T Consensus 98 ~~N~~~ 103 (382)
T PRK04338 98 KKNLEL 103 (382)
T ss_pred HHHHHH
Confidence 777643
No 177
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=59.87 E-value=23 Score=37.39 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=35.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|..+..+.+.+.. .-+++-+|+|+.+.+.-++++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~------~~~V~avD~s~~~l~~~~~~~~ 296 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQN------RGQITAVDRYPQKLEKIRSHAS 296 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCC------CcEEEEEECCHHHHHHHHHHHH
Confidence 48999999999988877765532 1268999999999888777775
No 178
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=59.62 E-value=12 Score=36.67 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=50.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeec-
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWH- 239 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~- 239 (412)
..+|+++|||-|-|+.-+-+. . .+++=+|+|+.+-+.-+..-.+ ++..+.|-
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~----G-----a~VtgiD~se~~I~~Ak~ha~e------------------~gv~i~y~~ 112 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL----G-----ASVTGIDASEKPIEVAKLHALE------------------SGVNIDYRQ 112 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC----C-----CeeEEecCChHHHHHHHHhhhh------------------ccccccchh
Confidence 369999999999887776543 1 3789999999988775532221 12234442
Q ss_pred cccccCCC--CCCEEEEeeeccccccccE
Q 015173 240 AALEQVPS--GFPTIIVAHEFYDALPVHQ 266 (412)
Q Consensus 240 ~~l~~lp~--~~~~~iiANEffDALPv~~ 266 (412)
.+.+++.. +..=+|++.|++--+|--.
T Consensus 113 ~~~edl~~~~~~FDvV~cmEVlEHv~dp~ 141 (243)
T COG2227 113 ATVEDLASAGGQFDVVTCMEVLEHVPDPE 141 (243)
T ss_pred hhHHHHHhcCCCccEEEEhhHHHccCCHH
Confidence 12334422 2234899999987777543
No 179
>PTZ00357 methyltransferase; Provisional
Probab=59.40 E-value=43 Score=38.01 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=32.8
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChh
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPT 202 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~ 202 (412)
.+.|+=+|||||=|..-.|++++... -+++++.||.+|.
T Consensus 701 ~vVImVVGAGRGPLVdraLrAak~~g---vkVrIyAVEKNPp 739 (1072)
T PTZ00357 701 TLHLVLLGCGRGPLIDECLHAVSALG---VRLRIFAIEKNLP 739 (1072)
T ss_pred eEEEEEEcCCccHHHHHHHHHHHHcC---CcEEEEEEecCcc
Confidence 36799999999999999999997542 2678999999955
No 180
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=58.81 E-value=28 Score=36.59 Aligned_cols=46 Identities=11% Similarity=0.058 Sum_probs=36.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||.|..+..+++.+.. ..+++-||+|+...+.-++++..
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~------~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKN------TGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHHH
Confidence 48999999999999998876521 23799999999987777766643
No 181
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=56.35 E-value=30 Score=32.86 Aligned_cols=37 Identities=16% Similarity=-0.037 Sum_probs=28.6
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
.-+|+++|||.|.-|.-+.+. -.+++-||+||...+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~---------G~~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ---------GHRVLGVELSEIAVEQ 71 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC---------CCeEEEEeCCHHHHHH
Confidence 359999999999977665321 1269999999998774
No 182
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=54.42 E-value=31 Score=35.32 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=46.6
Q ss_pred CCCChhH-HHHHHHHHH--HHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 133 TSPEVSQ-MFGEMVGVW--AMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 133 TSpEIs~-~FGe~Ia~~--~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
-+|+|.. .|.++.|+- +...+++. .++.+||.+|||.-+|+..++.... ++.+.|+=|+-++....+-
T Consensus 59 r~P~inRGy~~R~~aI~~~v~~Fl~~~--~~~~qivnLGcG~D~l~frL~s~~~-----~~~~~fievDfp~~~~rKi 129 (335)
T KOG2918|consen 59 RAPEINRGYWARTMAIRHAVRAFLEQT--DGKKQIVNLGAGFDTLYFRLLSSGE-----LDRVKFIEVDFPEVVERKI 129 (335)
T ss_pred CCceecchhhHHHHHHHHHHHHHHHhc--CCceEEEEcCCCccchhhhhhccCC-----CCcceEEEecCcHHHHHHH
Confidence 3677753 667766653 44455553 3578999999999999999987642 2455677777777665443
No 183
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=53.19 E-value=35 Score=33.45 Aligned_cols=63 Identities=14% Similarity=0.115 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 137 Is~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+++.-|++|...+ +.-.|+ +|+|+|.+.|.=+.-+.+.+. ..-+++-||.+|...+.-++.+.
T Consensus 63 ~~~~~g~lL~~l~-----~~~~ak--~iLEiGT~~GySal~la~al~------~~g~v~tiE~~~~~~~~Ar~~~~ 125 (247)
T PLN02589 63 TSADEGQFLNMLL-----KLINAK--NTMEIGVYTGYSLLATALALP------EDGKILAMDINRENYELGLPVIQ 125 (247)
T ss_pred cCHHHHHHHHHHH-----HHhCCC--EEEEEeChhhHHHHHHHhhCC------CCCEEEEEeCCHHHHHHHHHHHH
Confidence 3455565553322 233343 899999999987777666542 12379999999999888887775
No 184
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=52.83 E-value=38 Score=35.74 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=36.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|..+..++..+.. .-+++-+|+|+...+.-++++.
T Consensus 239 ~~VLD~cagpGgkt~~la~~~~~------~g~V~a~Dis~~rl~~~~~n~~ 283 (431)
T PRK14903 239 LRVLDTCAAPGGKTTAIAELMKD------QGKILAVDISREKIQLVEKHAK 283 (431)
T ss_pred CEEEEeCCCccHHHHHHHHHcCC------CCEEEEEECCHHHHHHHHHHHH
Confidence 48999999999999998776532 1278999999998888777765
No 185
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=52.26 E-value=53 Score=27.30 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccc--cceEEEEecChhhHHHHHhhc
Q 015173 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTE--SLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~--~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
...++++|+=+|+|..+ +||.++...+..+. ++++++.|.+|..-.++-=.|
T Consensus 20 ~~~~~~~iLl~G~gD~R---hvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL 73 (100)
T PF14737_consen 20 PPDEDLNILLLGCGDLR---HVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLL 73 (100)
T ss_pred CCCCCceEEEecCccHH---HHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHH
Confidence 34467999999999976 88888876554443 589999999999887776433
No 186
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=50.62 E-value=25 Score=37.06 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 137 VSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 137 Is~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+..|||+.-.++.++.+++..-..-..+++|.|=|.|+.-+..+...-+ ++-+-++..-...+.+|++.++
T Consensus 169 ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~----svG~eim~~pS~~a~~~~~~~k 240 (419)
T KOG3924|consen 169 SSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKK----SVGFEIMDKPSQCAELNKEEFK 240 (419)
T ss_pred cccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhcccc----ccceeeecCcHHHHHHHHHHHH
Confidence 36899999999999999998876666899999999999998887765332 2234455555566777776554
No 187
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=49.30 E-value=18 Score=36.14 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=33.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
..|+++|||.|-|...+-|.- -.+.-||+|+.+-+.-++.
T Consensus 91 ~~ilDvGCGgGLLSepLArlg---------a~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG---------AQVTGIDASDDMVEVANEH 130 (282)
T ss_pred ceEEEeccCccccchhhHhhC---------CeeEeecccHHHHHHHHHh
Confidence 469999999999988876652 1689999999999888876
No 188
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=48.84 E-value=8.6 Score=41.93 Aligned_cols=42 Identities=43% Similarity=0.845 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCCCccCCC--C--CC-C----CCCCee--CCCChhHHHHHH
Q 015173 103 VAEYMEEVLTNPKAGFYINR--D--VF-G----AEGDFI--TSPEVSQMFGEM 144 (412)
Q Consensus 103 f~dFM~~aLY~P~~GYY~~~--~--~~-G----~~GDFi--TSpEIs~~FGe~ 144 (412)
.-+||+.-|-||+.|+|+.. + ++ | ++|-|| |+-||.++||+-
T Consensus 364 I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~ 416 (786)
T KOG2244|consen 364 ILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGEN 416 (786)
T ss_pred HHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCC
Confidence 34689999999999999963 2 23 3 579998 899999999874
No 189
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=48.16 E-value=23 Score=33.95 Aligned_cols=39 Identities=13% Similarity=0.212 Sum_probs=27.6
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
+|+|||+|+|.-+..+-+ .+|. +++.--|..+.++.--.
T Consensus 28 ~vLEiaSGtGqHa~~FA~---~lP~----l~WqPSD~~~~~~~sI~ 66 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQ---ALPH----LTWQPSDPDDNLRPSIR 66 (204)
T ss_pred eEEEEcCCccHHHHHHHH---HCCC----CEEcCCCCChHHHhhHH
Confidence 699999999998777644 3454 46676777777754333
No 190
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=46.47 E-value=56 Score=34.34 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=35.0
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||.|..+..+.+.+.. .-+++-+|+|+...+.-++++.
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~------~g~v~a~D~~~~rl~~~~~n~~ 298 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGD------QGEIWAVDRSASRLKKLQENAQ 298 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCC------CceEEEEcCCHHHHHHHHHHHH
Confidence 58999999999999888765431 1268999999988776666664
No 191
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=45.98 E-value=49 Score=32.59 Aligned_cols=71 Identities=15% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 128 EGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 128 ~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
+.+|.|+.-|--+=.+|..+-+.-+ .+.-|.+--|++||||+|--.. +|.. +. ...+=|++||.|-+.-
T Consensus 20 A~kYt~nsri~~IQ~em~eRaLELL--alp~~~~~~iLDIGCGsGLSg~-vL~~----~G----h~wiGvDiSpsML~~a 88 (270)
T KOG1541|consen 20 APKYTQNSRIVLIQAEMAERALELL--ALPGPKSGLILDIGCGSGLSGS-VLSD----SG----HQWIGVDISPSMLEQA 88 (270)
T ss_pred hhhccccceeeeehHHHHHHHHHHh--hCCCCCCcEEEEeccCCCcchh-eecc----CC----ceEEeecCCHHHHHHH
Confidence 5788888888777788877765422 2222236689999999996443 3221 12 2578899999997765
Q ss_pred Hh
Q 015173 208 HH 209 (412)
Q Consensus 208 k~ 209 (412)
.+
T Consensus 89 ~~ 90 (270)
T KOG1541|consen 89 VE 90 (270)
T ss_pred HH
Confidence 54
No 192
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=45.92 E-value=29 Score=35.89 Aligned_cols=201 Identities=15% Similarity=0.148 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCC
Q 015173 142 GEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNAND 221 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~ 221 (412)
=.-.-+||-.++-+.-.+..-.+.++|||.|- |+|++-+.--+ .|+.|++...=.+.-+++-.......
T Consensus 99 lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGG---DLlKw~kAgI~-----~~igiDIAevSI~qa~~RYrdm~~r~--- 167 (389)
T KOG1975|consen 99 LRNFNNWIKSVLINLYTKRGDDVLDLGCGKGG---DLLKWDKAGIG-----EYIGIDIAEVSINQARKRYRDMKNRF--- 167 (389)
T ss_pred hhhhhHHHHHHHHHHHhccccccceeccCCcc---cHhHhhhhccc-----ceEeeehhhccHHHHHHHHHHHHhhh---
Confidence 34455677666655544433478889999997 99988653222 58888887765555444443211100
Q ss_pred cccceeeccCCCCceeeccccccCCCCCCEEEEee-----eccccccccEEEecCCeeEEEEEEEcCCCceEEEeCCCCC
Q 015173 222 NVEERTISSLAGTPVSWHAALEQVPSGFPTIIVAH-----EFYDALPVHQFQKTTRGWCEKLVDIAEDSSFRFVLSPQPT 296 (412)
Q Consensus 222 ~~~~~~~~~~~~~~v~W~~~l~~lp~~~~~~iiAN-----EffDALPv~~f~~~~~~w~E~~V~~~~~~~f~~~~~p~~~ 296 (412)
+. .-++.++|+= .+-|.+|-+ +-. .. +|.. +|++-++=...
T Consensus 168 ---------------------~~--~~f~a~f~~~Dc~~~~l~d~~e~~-----dp~-fD-ivSc----QF~~HYaFete 213 (389)
T KOG1975|consen 168 ---------------------KK--FIFTAVFIAADCFKERLMDLLEFK-----DPR-FD-IVSC----QFAFHYAFETE 213 (389)
T ss_pred ---------------------hc--ccceeEEEEeccchhHHHHhccCC-----CCC-cc-eeee----eeeEeeeeccH
Confidence 00 0012222221 111222100 000 00 1111 34443333222
Q ss_pred hhhH-HHHHHhhhhhcccCCCCcEEEEehhHHHHHHHHHHHhc-cCCcEEEEEeCCCCCCC-CC-chhhhccC-ccCCCC
Q 015173 297 PATL-FLLQRCKWAADKELEKLEHIEVCAKAMELTGAMAKRIG-SDGGGALIIDYGLNGVV-TD-SLQAIRKH-KFVDLF 371 (412)
Q Consensus 297 ~~~~-~l~~~~~~~~~~~~~~g~~~Ei~p~a~~~l~~la~~l~-~~~G~~LiIDYG~~~~~-~g-TLr~yr~H-~~~dpl 371 (412)
..+. .|.+..+.+. |.|..+=--|++..++.+|-..=. +-|.-+--|-|+..... .. .+=|.+=| .+.|..
T Consensus 214 e~ar~~l~Nva~~Lk----pGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaV 289 (389)
T KOG1975|consen 214 ESARIALRNVAKCLK----PGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAV 289 (389)
T ss_pred HHHHHHHHHHHhhcC----CCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEccccc
Confidence 2222 4544444432 358888888999999988766511 11334555666632221 11 23332111 122333
Q ss_pred CCCCCcccccccCHHHHHHHHHHhc
Q 015173 372 DNPGSADLSAYVDFASISHSAEEAS 396 (412)
Q Consensus 372 ~~PG~~DITahVDFt~L~~~~~~~~ 396 (412)
+.| -+-|.|..|+.+|++.+
T Consensus 290 dcP-----EylV~F~~l~~lae~y~ 309 (389)
T KOG1975|consen 290 DCP-----EYLVPFPTLVSLAEEYG 309 (389)
T ss_pred CCc-----ceeeehHHHHHHHHhcC
Confidence 344 36799999999999863
No 193
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=44.74 E-value=30 Score=31.57 Aligned_cols=53 Identities=26% Similarity=0.343 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCcEEE--EEcCCcchhHHHHHHHHhcCcCccccceEEEEec
Q 015173 138 SQMFGEMVGVWAMCLWEQMGQPNRVNLV--ELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (412)
Q Consensus 138 s~~FGe~Ia~~~~~~w~~~g~p~~l~Iv--EiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (412)
..-||+.||..+ .++.+-++ ++|||+=||++.|++.+... ..-.+=+|.||+.
T Consensus 11 t~~lg~~l~~~l--------~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~-~~V~SPTFtlv~~ 65 (149)
T COG0802 11 TLALGERLAEAL--------KAGDVVLLSGDLGAGKTTLVRGIAKGLGVD-GNVKSPTFTLVEE 65 (149)
T ss_pred HHHHHHHHHhhC--------CCCCEEEEEcCCcCChHHHHHHHHHHcCCC-CcccCCCeeeehh
Confidence 456777777654 23333333 89999999999999998631 1112225677644
No 194
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=44.53 E-value=44 Score=33.12 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.1
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.++|+|||+| .|.-++... |+ +++-+++|+.+-++-++
T Consensus 36 ~a~DvG~G~G-qa~~~iae~------~k--~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 36 LAWDVGTGNG-QAARGIAEH------YK--EVIATDVSEAMLKVAKK 73 (261)
T ss_pred eEEEeccCCC-cchHHHHHh------hh--hheeecCCHHHHHHhhc
Confidence 7999999999 455444332 22 58889999987765544
No 195
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=44.29 E-value=72 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=27.9
Q ss_pred CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHH
Q 015173 157 GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKL 206 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~ 206 (412)
...++.+++++|||.|+.+.=+.+. -..++-||.|+.--+.
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~---------G~~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQ---------GFDVTAVDISPVALEK 67 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHT---------T-EEEEEESSHHHHHH
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHC---------CCeEEEEECCHHHHHH
Confidence 3334569999999999988765432 2369999999965544
No 196
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=44.05 E-value=87 Score=31.43 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=36.5
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.+.+||+|.|+-+=++-+|++++.... .++|+-|++|...-+.-.+.|.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~---~~ryvpiDv~a~iL~~ta~ai~ 127 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGS---LLRYVPIDVSASILRATATAIL 127 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCC---cceeeeecccHHHHHHHHHHHH
Confidence 369999999999999999999975322 2489999999875433333333
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=43.52 E-value=40 Score=33.58 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=37.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
+..+++|||.+|+|...|-..+... .+.-|++.|.|.++-++.+.
T Consensus 59 ~~~~LDIGCNsG~lt~~iak~F~~r-------~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 59 PKQALDIGCNSGFLTLSIAKDFGPR-------RILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cceeEeccCCcchhHHHHHHhhccc-------eeeEeeccHHHHHHHHHhcc
Confidence 3589999999999999997765422 48889999999999888774
No 198
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=42.31 E-value=25 Score=34.62 Aligned_cols=42 Identities=21% Similarity=0.422 Sum_probs=29.5
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhH
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQ 204 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr 204 (412)
..|.-.+-.++|||||-|...++||++=. -+..+||+.+..-
T Consensus 45 ~A~~~~~~~v~eIgPgpggitR~il~a~~--------~RL~vVE~D~RFi 86 (326)
T KOG0821|consen 45 KAGNLTNAYVYEIGPGPGGITRSILNADV--------ARLLVVEKDTRFI 86 (326)
T ss_pred hccccccceeEEecCCCCchhHHHHhcch--------hheeeeeeccccC
Confidence 34444567899999999999999997621 1456777765543
No 199
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.92 E-value=19 Score=40.14 Aligned_cols=42 Identities=36% Similarity=0.699 Sum_probs=34.7
Q ss_pred cHHHHHHHhhcCCCCCccCCC--CCCCCCCCeeC-C-CChhHHHHH
Q 015173 102 SVAEYMEEVLTNPKAGFYINR--DVFGAEGDFIT-S-PEVSQMFGE 143 (412)
Q Consensus 102 sf~dFM~~aLY~P~~GYY~~~--~~~G~~GDFiT-S-pEIs~~FGe 143 (412)
..-+||..-||+|+.|||++. +..|.+|-||| | -||..+-|+
T Consensus 300 ~i~~~l~rel~sp~ggFyss~DAD~~g~EG~~Y~Ws~eEi~~~Lg~ 345 (667)
T COG1331 300 GILDYLLRELYSPEGGFYSSLDADSDGEEGKYYTWSVEELKEVLGE 345 (667)
T ss_pred HHHHHHHHHhcCCCCceeecccccCcccCCCeeecCHHHHHHHhcc
Confidence 345799999999999999974 47899999997 3 558888884
No 200
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=40.69 E-value=75 Score=32.92 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEec
Q 015173 140 MFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVEC 199 (412)
Q Consensus 140 ~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~ 199 (412)
-|+...|++.. ++.+..-..++||++|-|.|.-=..+++.+...|.-...++++-|..
T Consensus 92 ~fa~~taNqaI--leA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 92 KFAHFTANQAI--LEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred hhhhhchhHHH--HHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 36777777643 45554446799999999999999999999987766666889999988
No 201
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=40.63 E-value=32 Score=33.37 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=33.7
Q ss_pred CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 160 NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 160 ~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
..-+.+|.|||=|+...++|- | +++ ++-|||+.+.+-+.-++.|..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl-----~-~f~--~VDlVEp~~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL-----P-VFD--EVDLVEPVEKFLEQAKEYLGK 100 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC-----C-C-S--EEEEEES-HHHHHHHHHHTCC
T ss_pred CcceEEecccccchhHHHHHH-----H-hcC--EeEEeccCHHHHHHHHHHhcc
Confidence 456899999999999998863 2 222 689999999999888877764
No 202
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=39.28 E-value=46 Score=34.83 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=32.2
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
-+|+|+|||+|.++...+ .. ..-+++.||.|+...+.-++++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa---~~-----ga~~V~~VD~s~~al~~a~~N~~ 264 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSAL---MG-----GCSQVVSVDTSQEALDIARQNVE 264 (396)
T ss_pred CeEEEeccCCCHHHHHHH---hC-----CCCEEEEEECCHHHHHHHHHHHH
Confidence 489999999999865432 11 12278999999999888777664
No 203
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=38.27 E-value=79 Score=30.53 Aligned_cols=64 Identities=22% Similarity=0.302 Sum_probs=42.9
Q ss_pred CCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 129 GDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 129 GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
+|-.|-.|---+|-++|+.-.- -.+.++|+|+|-|+.---.+ +=+++-||..|.-...-+
T Consensus 12 ~~LL~D~eRlavF~~ai~~va~-----------d~~~DLGaGsGiLs~~Aa~~---------A~rViAiE~dPk~a~~a~ 71 (252)
T COG4076 12 LDLLRDVERLAVFTSAIAEVAE-----------DTFADLGAGSGILSVVAAHA---------AERVIAIEKDPKRARLAE 71 (252)
T ss_pred hhhhhhHHHHHHHHHHHHHHhh-----------hceeeccCCcchHHHHHHhh---------hceEEEEecCcHHHHHhh
Confidence 3444444444567777766433 26899999999876433222 116899999999888888
Q ss_pred hhcc
Q 015173 209 HNLK 212 (412)
Q Consensus 209 ~~L~ 212 (412)
++|.
T Consensus 72 eN~~ 75 (252)
T COG4076 72 ENLH 75 (252)
T ss_pred hcCC
Confidence 8764
No 204
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=38.01 E-value=14 Score=38.58 Aligned_cols=41 Identities=24% Similarity=0.468 Sum_probs=29.4
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
-+|++.|+|-||-+...- ..+|++- +.+|||.||.|++.=-
T Consensus 115 qsiLDvG~GPgtgl~A~n---~i~Pdl~---sa~ile~sp~lrkV~~ 155 (484)
T COG5459 115 QSILDVGAGPGTGLWALN---DIWPDLK---SAVILEASPALRKVGD 155 (484)
T ss_pred chhhccCCCCchhhhhhc---ccCCCch---hhhhhccCHHHHHHHH
Confidence 369999999888443321 2357654 4789999999998864
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=37.90 E-value=88 Score=31.71 Aligned_cols=49 Identities=18% Similarity=0.206 Sum_probs=33.3
Q ss_pred HcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 155 QMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 155 ~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
.+..-...+|||-|-|+|.|...|.|++.--. +.+-.|......+.-++
T Consensus 100 ~L~i~PGsvV~EsGTGSGSlShaiaraV~ptG------hl~tfefH~~Ra~ka~e 148 (314)
T KOG2915|consen 100 MLEIRPGSVVLESGTGSGSLSHAIARAVAPTG------HLYTFEFHETRAEKALE 148 (314)
T ss_pred HhcCCCCCEEEecCCCcchHHHHHHHhhCcCc------ceEEEEecHHHHHHHHH
Confidence 34443336999999999999999999875211 46667775555544444
No 206
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=36.81 E-value=1.2e+02 Score=29.43 Aligned_cols=48 Identities=10% Similarity=-0.045 Sum_probs=34.3
Q ss_pred HHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 153 WEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 153 w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
|.++..+..-+|+-.|||+|.-|.-+.+. -.+++-||.|+.-.+...+
T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~---------G~~V~GvDlS~~Ai~~~~~ 83 (226)
T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK---------GVKVIGIELSEKAVLSFFS 83 (226)
T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC---------CCcEEEEecCHHHHHHHHH
Confidence 44445444469999999999977665431 1269999999988777654
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=36.77 E-value=48 Score=37.26 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=35.3
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-+|+|+|||+|.++..++.. .+-+++.||.|+...+.-++++..
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~--------Ga~~V~~vD~s~~al~~a~~N~~~ 583 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG--------GAKSTTTVDMSNTYLEWAERNFAL 583 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 38999999999999887653 112699999999999888877753
No 208
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=35.92 E-value=1.1e+02 Score=33.88 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=44.7
Q ss_pred HHHHHHHHHH-----HHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhc----Cc-CccccceEEEEecChhhHHHHHhh
Q 015173 141 FGEMVGVWAM-----CLWEQMGQPNRVNLVELGPGRGTLMADLLRGASK----FK-NFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 141 FGe~Ia~~~~-----~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~----~p-~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
+.|+..+++. +.|...+. ..++|+|+|=|.|....-.++.+++ .| ....+|+|+-+|.-|-.++.-++.
T Consensus 34 ~~e~~~~f~~~~~l~~r~~~~~~-~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~ 112 (662)
T PRK01747 34 LEETRYVFLGGNGLPERWAEHPR-RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARA 112 (662)
T ss_pred HHHhhhhhhcCCCHHHHHhcCCC-CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHH
Confidence 4555555543 23433222 3599999999999988888887742 23 234578999999877554444433
No 209
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=34.52 E-value=45 Score=34.04 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=27.2
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (412)
.-+|+++|||+|..|.-+++. -+. .++-||+++..
T Consensus 116 gk~VLDIGC~nGY~~frM~~~---GA~-----~ViGiDP~~lf 150 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGR---GAK-----SVIGIDPSPLF 150 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhc---CCC-----EEEEECCChHH
Confidence 348999999999999888754 222 58889988764
No 210
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=34.42 E-value=77 Score=27.27 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=20.9
Q ss_pred EEcCCcc--hhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhh
Q 015173 166 ELGPGRG--TLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHN 210 (412)
Q Consensus 166 EiGaG~G--tLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~ 210 (412)
++||+.| +...-.+.. ...+ ..+++.+|++|.+.+.-+++
T Consensus 1 DvGA~~G~~~~~~~~~~~-~~~~----~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK-KCGP----GGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHH-HTS------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHH-HcCC----CCEEEEEECCHHHHHHHhHH
Confidence 6899999 433333221 1222 23789999999987665555
No 211
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=34.15 E-value=52 Score=32.63 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=27.5
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
-+++++|||+|-+..- ||-+.. +..-|++|.+|-++-.+
T Consensus 127 ~~~lDLGCGTGL~G~~-lR~~a~--------~ltGvDiS~nMl~kA~e 165 (287)
T COG4976 127 RRMLDLGCGTGLTGEA-LRDMAD--------RLTGVDISENMLAKAHE 165 (287)
T ss_pred ceeeecccCcCcccHh-HHHHHh--------hccCCchhHHHHHHHHh
Confidence 4899999999976544 444322 35678899998777665
No 212
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=34.07 E-value=56 Score=31.37 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=27.5
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHH
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQH 208 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk 208 (412)
+|+++|+|+|.|...+.+. .|+. ...-|+-|+.--+.-+
T Consensus 70 ~VlDLGtGNG~~L~~L~~e--gf~~-----~L~GvDYs~~AV~LA~ 108 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKE--GFQS-----KLTGVDYSEKAVELAQ 108 (227)
T ss_pred ceeeccCCchHHHHHHHHh--cCCC-----CccccccCHHHHHHHH
Confidence 8999999999988777543 2333 2456777887766643
No 213
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=32.77 E-value=66 Score=29.87 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=41.6
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhc
Q 015173 132 ITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNL 211 (412)
Q Consensus 132 iTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L 211 (412)
.|=|....+ =|+|-.|+... . . ...+++++=||+|.|....|..= +-++++||.++...+.-++++
T Consensus 20 ~~RPT~drv-realFniL~~~-~---~-~g~~vLDLFaGSGalGlEALSRG--------A~~v~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 20 NTRPTTDRV-REALFNILQPR-N---L-EGARVLDLFAGSGALGLEALSRG--------AKSVVFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp TS-SSSHHH-HHHHHHHHHCH-----H-TT-EEEETT-TTSHHHHHHHHTT---------SEEEEEES-HHHHHHHHHHH
T ss_pred CcCCCcHHH-HHHHHHHhccc-c---c-CCCeEEEcCCccCccHHHHHhcC--------CCeEEEEECCHHHHHHHHHHH
Confidence 344444433 45555555533 1 1 23599999999999997655321 126999999999988888877
Q ss_pred cc
Q 015173 212 KC 213 (412)
Q Consensus 212 ~~ 213 (412)
+.
T Consensus 86 ~~ 87 (183)
T PF03602_consen 86 EK 87 (183)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 214
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=32.17 E-value=2.5e+02 Score=25.75 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=34.6
Q ss_pred cEEEEEcCCcchhHHHHHHHHhc-CcCcc--ccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASK-FKNFT--ESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~-~p~~~--~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
-.|++-=||+||+.---...... .| .. +.++++-+|+++...+.-++++..
T Consensus 30 ~~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 30 DVVLDPFCGSGTILIEAALMGANIPP-LNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp S-EEETT-TTSHHHHHHHHHHTTTST-TTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CEEeecCCCCCHHHHHHHHHhhCccc-ccccccccEEecCCCHHHHHHHHHHHHh
Confidence 48999999999998766555443 33 11 134589999999998888888753
No 215
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=31.49 E-value=1e+02 Score=23.95 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=25.5
Q ss_pred EEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 164 LVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 164 IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
++++|||.|... ++..+.. .. ..+.-+|.++.+...++.
T Consensus 52 ~ld~~~g~g~~~--~~~~~~~--~~---~~~~~~d~~~~~~~~~~~ 90 (257)
T COG0500 52 VLDIGCGTGRLA--LLARLGG--RG---AYVVGVDLSPEMLALARA 90 (257)
T ss_pred eEEecCCcCHHH--HHHHhCC--CC---ceEEEEeCCHHHHHHHHh
Confidence 999999999977 2222221 11 234558999988777444
No 216
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=31.35 E-value=1.7e+02 Score=29.64 Aligned_cols=45 Identities=16% Similarity=0.102 Sum_probs=36.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
..+|+.++|.|..+.-||+.+. ...+++-+|.+|.+.+.-+++|.
T Consensus 21 ~~vlD~TlG~GGhS~~il~~~~------~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 21 GIYVDGTFGGGGHSRAILERLG------PKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred CEEEEeCcCChHHHHHHHHhCC------CCCEEEEEcCCHHHHHHHHHhhc
Confidence 4899999999999999987642 12368999999999888777774
No 217
>PF11784 DUF3320: Protein of unknown function (DUF3320); InterPro: IPR021754 This family is conserved in Proteobacteria and Chlorobi families. Many members are annotated as being putative DNA helicase-related proteins.
Probab=31.04 E-value=83 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.417 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcccHHHHHHHhh
Q 015173 78 HERKLESELVKHLKGIIKFRGGPISVAEYMEEVL 111 (412)
Q Consensus 78 ~~~~~~~~L~~~i~~~I~~~~GpIsf~dFM~~aL 111 (412)
..+.....|.+.|.+.|+.. |||+.+.-.+..+
T Consensus 5 ~~~~~~~~L~~~i~~Iv~~E-gPI~~~~L~~Ri~ 37 (52)
T PF11784_consen 5 YHPEYRPQLARMIRQIVEVE-GPIHEDELARRIA 37 (52)
T ss_pred hhhhHHHHHHHHHHHHHHHc-CCccHHHHHHHHH
Confidence 33445688999999999999 9999988666554
No 218
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=30.91 E-value=1.2e+02 Score=31.96 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHcC---CC-CCcEEEEEcCCcc----hhHHHHHHHHh
Q 015173 137 VSQMFGEMVGVWAMCLWEQMG---QP-NRVNLVELGPGRG----TLMADLLRGAS 183 (412)
Q Consensus 137 Is~~FGe~Ia~~~~~~w~~~g---~p-~~l~IvEiGaG~G----tLa~DIL~~l~ 183 (412)
+-......+.-++.+..+.+. .| ..++|.|+|||+| .++..|++.++
T Consensus 36 ~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 36 AQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 444444444444444333332 24 5789999999999 56667777765
No 219
>KOG1774 consensus Small nuclear ribonucleoprotein E [RNA processing and modification]
Probab=30.29 E-value=32 Score=28.32 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=25.8
Q ss_pred cccHHHHHHHhhcCCCCCccCC--CCCCCC---CCCeeCC
Q 015173 100 PISVAEYMEEVLTNPKAGFYIN--RDVFGA---EGDFITS 134 (412)
Q Consensus 100 pIsf~dFM~~aLY~P~~GYY~~--~~~~G~---~GDFiTS 134 (412)
-+-|++||..+|=+-+.=+-.+ +..+|+ +||=||.
T Consensus 43 IvGFDEyMNvVlD~aeev~~k~~~rk~lGRilLKGDnItl 82 (88)
T KOG1774|consen 43 IVGFDEYMNLVLDDAEEVHSKTKSRKELGRILLKGDNITL 82 (88)
T ss_pred EechHHhhhhhhcchhhccccccCCCccccEEEcCCcEEE
Confidence 3679999999998766555443 336786 8998884
No 220
>PTZ00387 epsilon tubulin; Provisional
Probab=29.43 E-value=2.2e+02 Score=30.60 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=41.1
Q ss_pred CCCCCeeCC-CChhHHHHHHHHHHHHHHHHHcCCCCCcEE-EEEcCCcc-hhHHHHHHHHh-cCcC
Q 015173 126 GAEGDFITS-PEVSQMFGEMVGVWAMCLWEQMGQPNRVNL-VELGPGRG-TLMADLLRGAS-KFKN 187 (412)
Q Consensus 126 G~~GDFiTS-pEIs~~FGe~Ia~~~~~~w~~~g~p~~l~I-vEiGaG~G-tLa~DIL~~l~-~~p~ 187 (412)
|+++.|-.. ...++-+.+.+-..+....++.+....+.| --+|.|+| -++.-|++.++ .+|+
T Consensus 97 GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~ 162 (465)
T PTZ00387 97 GAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPH 162 (465)
T ss_pred CCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhccc
Confidence 566666433 223456667777777777777776654444 47999998 67788888887 4554
No 221
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=29.28 E-value=1.5e+02 Score=31.41 Aligned_cols=41 Identities=27% Similarity=0.409 Sum_probs=30.5
Q ss_pred cCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 156 MGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 156 ~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
.|.+ ++|++|+|.|.|++-+ .+--.+++.-||-|..+-++-
T Consensus 152 ~gi~---~vvD~GaG~G~LSr~l--------Sl~y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 152 TGID---QVVDVGAGQGHLSRFL--------SLGYGLSVKAIEGSQRLVERA 192 (476)
T ss_pred cCCC---eeEEcCCCchHHHHHH--------hhccCceEEEeccchHHHHHH
Confidence 4554 7999999999988765 233456899999997665543
No 222
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=28.99 E-value=52 Score=31.95 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=14.1
Q ss_pred CCCCCcEEEEEcCCcchhHHHH
Q 015173 157 GQPNRVNLVELGPGRGTLMADL 178 (412)
Q Consensus 157 g~p~~l~IvEiGaG~GtLa~DI 178 (412)
..|....|.++|||.+.||..+
T Consensus 69 ~~~~~~viaD~GCGdA~la~~~ 90 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKLAKAV 90 (219)
T ss_dssp TS-TTS-EEEES-TT-HHHHH-
T ss_pred hcCCCEEEEECCCchHHHHHhc
Confidence 4567789999999999999543
No 223
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=28.53 E-value=27 Score=34.07 Aligned_cols=63 Identities=27% Similarity=0.423 Sum_probs=41.8
Q ss_pred CCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCC----CCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecC
Q 015173 125 FGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQP----NRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECS 200 (412)
Q Consensus 125 ~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p----~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~S 200 (412)
.|++.=|+-|++- |..++++ |.| .+.+++++|||.|.....+--.+. +++--|.|
T Consensus 85 lgrGsMFifSe~Q---F~klL~i---------~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---------evyATElS 143 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQ---FRKLLVI---------GGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---------EVYATELS 143 (288)
T ss_pred cccCceEEecHHH---HHHHHhc---------CCCccCCCCeeEEeccCCCcchhhhhcchHH---------HHHHHHhh
Confidence 4777789888764 4444433 323 357999999999987766644433 24445888
Q ss_pred hhhHHHHH
Q 015173 201 PTLQKLQH 208 (412)
Q Consensus 201 p~Lr~~Qk 208 (412)
..||.+-+
T Consensus 144 ~tMr~rL~ 151 (288)
T KOG3987|consen 144 WTMRDRLK 151 (288)
T ss_pred HHHHHHHh
Confidence 88886644
No 224
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=26.49 E-value=98 Score=20.82 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHhhc
Q 015173 84 SELVKHLKGIIKFRGGPISVAEYMEEVLT 112 (412)
Q Consensus 84 ~~L~~~i~~~I~~~~GpIsf~dFM~~aLY 112 (412)
.++.+.|.+..+.. | +|.++||+.+|-
T Consensus 8 ~~~~~~l~~~a~~~-g-~s~s~~ir~ai~ 34 (39)
T PF01402_consen 8 DELYERLDELAKEL-G-RSRSELIREAIR 34 (39)
T ss_dssp HHHHHHHHHHHHHH-T-SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-C-cCHHHHHHHHHH
Confidence 56788888888888 6 999999999873
No 225
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=26.32 E-value=1.1e+02 Score=32.44 Aligned_cols=41 Identities=29% Similarity=0.579 Sum_probs=32.9
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
-.++=+|.|.|--++.+|+ +|.+ .++++||..|.+.+.-++
T Consensus 291 ~~vLvlGGGDGLAlRellk----yP~~---~qI~lVdLDP~miela~~ 331 (508)
T COG4262 291 RSVLVLGGGDGLALRELLK----YPQV---EQITLVDLDPRMIELASH 331 (508)
T ss_pred ceEEEEcCCchHHHHHHHh----CCCc---ceEEEEecCHHHHHHhhh
Confidence 4788999999987777665 4644 379999999999998773
No 226
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=25.57 E-value=1.8e+02 Score=28.55 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=29.3
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhh
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTL 203 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~L 203 (412)
..+|+=+||.+||-..+|-+...... .++-||.||..
T Consensus 74 gskVLYLGAasGTTVSHvSDIvg~~G------~VYaVEfs~r~ 110 (229)
T PF01269_consen 74 GSKVLYLGAASGTTVSHVSDIVGPDG------VVYAVEFSPRS 110 (229)
T ss_dssp T-EEEEETTTTSHHHHHHHHHHTTTS------EEEEEESSHHH
T ss_pred CCEEEEecccCCCccchhhhccCCCC------cEEEEEecchh
Confidence 35999999999999999988764222 57889999954
No 227
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=25.42 E-value=57 Score=31.49 Aligned_cols=28 Identities=21% Similarity=0.564 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHcCCC---CCcEEEEEcCCcchhH
Q 015173 142 GEMVGVWAMCLWEQMGQP---NRVNLVELGPGRGTLM 175 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~p---~~l~IvEiGaG~GtLa 175 (412)
|..+|+|+. ..| ...+|+|+|+|+|--+
T Consensus 64 G~~lAR~i~------~~PetVrgkrVLd~gagsgLva 94 (218)
T COG3897 64 GQVLARYID------DHPETVRGKRVLDLGAGSGLVA 94 (218)
T ss_pred hHHHHHHHh------cCccccccceeeecccccChHH
Confidence 556777765 334 2359999999999644
No 228
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=24.56 E-value=2.2e+02 Score=32.08 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHcCC-CCCcEEEEEcCCcchhHHHHHHHHh-cCcCcc------------------------------
Q 015173 142 GEMVGVWAMCLWEQMGQ-PNRVNLVELGPGRGTLMADLLRGAS-KFKNFT------------------------------ 189 (412)
Q Consensus 142 Ge~Ia~~~~~~w~~~g~-p~~l~IvEiGaG~GtLa~DIL~~l~-~~p~~~------------------------------ 189 (412)
=|+||.-++.. .+. .....+++-+||+||+.--...... ..|.+.
T Consensus 174 ~etlAaa~l~~---a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 174 KENLAAAILLR---SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred cHHHHHHHHHH---cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 47777766643 343 1246899999999999855543221 112110
Q ss_pred ----ccceEEEEecChhhHHHHHhhccc
Q 015173 190 ----ESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 190 ----~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
...+++-+|+++.+.+.-++++..
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~ 278 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARR 278 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHH
Confidence 124689999999999998888764
No 229
>COG3876 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=24 Score=36.23 Aligned_cols=73 Identities=15% Similarity=0.157 Sum_probs=44.6
Q ss_pred HhhcCCCCCccCC---CCCCCCCCCeeCCCChhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHh
Q 015173 109 EVLTNPKAGFYIN---RDVFGAEGDFITSPEVSQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGAS 183 (412)
Q Consensus 109 ~aLY~P~~GYY~~---~~~~G~~GDFiTSpEIs~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~ 183 (412)
.|||.|+||||.. .+.+|..-|+.|---+=++||+.=-- --++++.... --+.|=++|.-.=|...-++..++
T Consensus 75 ~aL~~pEHG~rG~~qage~vg~y~d~~tgipvySLyg~~~~P-t~emle~~DV-~vfDiQDvG~R~Ytyiytm~yame 150 (409)
T COG3876 75 TALCTPEHGYRGAAQAGETVGNYPDRKTGIPVYSLYGVKEKP-TKEMLEDCDV-FVFDIQDVGVRSYTYIYTMAYAME 150 (409)
T ss_pred EEEeccccccccccccccccCCCcccccCCeEEEeeecccCC-CHHHHhcCCE-EEEechhccceehhHHHHHHHHHH
Confidence 4799999999974 35688899999986655688753100 0011121111 013444778877777766666654
No 230
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=23.34 E-value=1.9e+02 Score=27.65 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=35.1
Q ss_pred EehhHHHHHHHHHHHhccCCcEEEEEeCCCCCCCCCchhhhccCccCCCCCCCCCcccccccCHHHHHHHHHHh-ccccC
Q 015173 322 VCAKAMELTGAMAKRIGSDGGGALIIDYGLNGVVTDSLQAIRKHKFVDLFDNPGSADLSAYVDFASISHSAEEA-SELNH 400 (412)
Q Consensus 322 i~p~a~~~l~~la~~l~~~~G~~LiIDYG~~~~~~gTLr~yr~H~~~dpl~~PG~~DITahVDFt~L~~~~~~~-~~~~~ 400 (412)
-||-|..||.+|++. .. =.+|++ ++|+++..|=.|=.|.-.|+.-++...+. +..-.
T Consensus 12 SCPpAD~~L~~l~~~-~~--Vi~Laf-------------------HVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~v 69 (202)
T PF06764_consen 12 SCPPADRLLSELAAR-PD--VIALAF-------------------HVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSV 69 (202)
T ss_dssp T-HHHHHHHHHHHHH-TS--SEEEEE-------------------E-STT-SSSS--TT--HHHHHHHHHHHHHTT-S--
T ss_pred CCcHHHHHHHHhhcC-CC--EEEEEe-------------------cCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCC
Confidence 388999999999988 22 233331 45777777877888888888877776665 45667
Q ss_pred CCcc
Q 015173 401 YSRT 404 (412)
Q Consensus 401 ~~~~ 404 (412)
|+|+
T Consensus 70 YTPQ 73 (202)
T PF06764_consen 70 YTPQ 73 (202)
T ss_dssp -SSE
T ss_pred cCCe
Confidence 7775
No 231
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=23.24 E-value=37 Score=36.79 Aligned_cols=57 Identities=30% Similarity=0.518 Sum_probs=35.5
Q ss_pred CCCCC-CCCCCeeCCCCh-hHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHH
Q 015173 121 NRDVF-GAEGDFITSPEV-SQMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGA 182 (412)
Q Consensus 121 ~~~~~-G~~GDFiTSpEI-s~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l 182 (412)
+..+| |++|+|+||-.| ..+.-|+..+-.+.+ +..+.|..+.+ .|||.|...||=.-
T Consensus 314 N~SPfAG~EGk~vTSR~i~dRL~~El~~NValrV-e~t~~pd~f~V----sGRGELhLsILiE~ 372 (603)
T COG1217 314 NDSPFAGKEGKFVTSRQIRDRLNKELETNVALRV-EETESPDAFEV----SGRGELHLSILIEN 372 (603)
T ss_pred cCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEE-eecCCCCeEEE----eccceeehHHHHHH
Confidence 34466 999999999777 456666555432211 22333433333 39999999998654
No 232
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.97 E-value=2e+02 Score=27.46 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=32.6
Q ss_pred HHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHH
Q 015173 150 MCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQ 207 (412)
Q Consensus 150 ~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Q 207 (412)
...|..++.+...+|+-.|||+|.-|.-+.+ + . .+++-||+|+.-.+.-
T Consensus 27 ~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~---~--G----~~VvGvDls~~Ai~~~ 75 (218)
T PF05724_consen 27 VEYLDSLALKPGGRVLVPGCGKGYDMLWLAE---Q--G----HDVVGVDLSPTAIEQA 75 (218)
T ss_dssp HHHHHHHTTSTSEEEEETTTTTSCHHHHHHH---T--T----EEEEEEES-HHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEeCCCChHHHHHHHH---C--C----CeEEEEecCHHHHHHH
Confidence 4445555555567999999999985444332 1 1 2689999999876653
No 233
>TIGR03834 EAGR_box EAGR box. The EAGR box (Enriched in Aromatic and Glycine Residues) is found in three different proteins of the Mycoplasma genitalium terminal organelle, which acts in both cytadherence and gliding motility. The presence of this domain in a genome predicts the Mycoplasma-type terminal organelle structure, gliding motility, and cytadherence. The EAGR box may occur from one to nine times in a protein.
Probab=22.88 E-value=58 Score=21.63 Aligned_cols=9 Identities=33% Similarity=0.700 Sum_probs=7.4
Q ss_pred CCCCCccCC
Q 015173 113 NPKAGFYIN 121 (412)
Q Consensus 113 ~P~~GYY~~ 121 (412)
++++|||..
T Consensus 3 n~~YG~yd~ 11 (28)
T TIGR03834 3 NEEYGYYDE 11 (28)
T ss_pred ccccccCcC
Confidence 689999964
No 234
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=22.17 E-value=1.9e+02 Score=28.92 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHh
Q 015173 139 QMFGEMVGVWAMCLWEQMGQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHH 209 (412)
Q Consensus 139 ~~FGe~Ia~~~~~~w~~~g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~ 209 (412)
+.|-|.||-.+..-........+ ...+||||.|.++.+++..- + + ++++++.|-.|.+.-+.
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp-~a~diGcs~G~v~rhl~~e~-----v-e--kli~~DtS~~M~~s~~~ 113 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKKSFP-TAFDIGCSLGAVKRHLRGEG-----V-E--KLIMMDTSYDMIKSCRD 113 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhhhCc-ceeecccchhhhhHHHHhcc-----h-h--heeeeecchHHHHHhhc
Confidence 56666666665554444333222 68999999999999986541 1 1 58999999999876654
No 235
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.55 E-value=1.8e+02 Score=28.46 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=36.1
Q ss_pred cEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhccc
Q 015173 162 VNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKC 213 (412)
Q Consensus 162 l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~ 213 (412)
...+++|.|+|.|..-+-+-+.. ..- ..+=||--|.|-+.-+++|..
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~--~g~---~~~GIEh~~eLVe~Sk~nl~k 130 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGA--TGG---NVHGIEHIPELVEYSKKNLDK 130 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcC--CCc---cccchhhhHHHHHHHHHHHHh
Confidence 68999999999998887665532 111 128899999999999988854
No 236
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=21.54 E-value=2.1e+02 Score=29.65 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=46.1
Q ss_pred CC-CCCCeeCCCC-hhHHHHHHH---HH-HHHHHHHHc-CCCCCcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEE
Q 015173 125 FG-AEGDFITSPE-VSQMFGEMV---GV-WAMCLWEQM-GQPNRVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLV 197 (412)
Q Consensus 125 ~G-~~GDFiTSpE-Is~~FGe~I---a~-~~~~~w~~~-g~p~~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iV 197 (412)
.| ..|.|+++-+ .+..|-+.- .. +..++.+.. |...--..|++|+|.|+.++.||. ++|. +-+|
T Consensus 135 ~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~---~fp~------ik~i 205 (342)
T KOG3178|consen 135 HGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLS---KYPH------IKGI 205 (342)
T ss_pred cchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHH---hCCC------Ccee
Confidence 47 5788998855 344443322 11 111122221 222245899999999999999987 3553 5666
Q ss_pred ecChhhHHHHHhhc
Q 015173 198 ECSPTLQKLQHHNL 211 (412)
Q Consensus 198 E~Sp~Lr~~Qk~~L 211 (412)
+.-....-.+++.+
T Consensus 206 nfdlp~v~~~a~~~ 219 (342)
T KOG3178|consen 206 NFDLPFVLAAAPYL 219 (342)
T ss_pred ecCHHHHHhhhhhh
Confidence 66666666666555
No 237
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=20.87 E-value=3e+02 Score=29.57 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=53.1
Q ss_pred CcEEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcccccccCcCCcccceeeccCCCCceeecc
Q 015173 161 RVNLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLKCMDENNANDNVEERTISSLAGTPVSWHA 240 (412)
Q Consensus 161 ~l~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~~~~~~~~~~~~~~~~~~~~~~~~v~W~~ 240 (412)
++.|+=||+|+=..+.-|+--+...+.+.. .++.|+|+++.-.+.=...++....+ .....+|.++.
T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~-~el~L~Did~~r~~~i~~~~~~~v~~------------~g~~~kv~~tt 69 (442)
T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPV-RELALYDIDEERLKIIAILAKKLVEE------------AGAPVKVEATT 69 (442)
T ss_pred cceEEEECCCccccHHHHHHHHhcCccCCc-ceEEEEeCCHHHHHHHHHHHHHHHHh------------hCCCeEEEEec
Confidence 468999999999999999988887776644 38999999987555222111110000 11224788887
Q ss_pred ccccCCCCCCEEEEee
Q 015173 241 ALEQVPSGFPTIIVAH 256 (412)
Q Consensus 241 ~l~~lp~~~~~~iiAN 256 (412)
+.++.-.+ .-||+.+
T Consensus 70 d~~eAl~g-AdfVi~~ 84 (442)
T COG1486 70 DRREALEG-ADFVITQ 84 (442)
T ss_pred CHHHHhcC-CCEEEEE
Confidence 77665444 3477764
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=20.21 E-value=1.7e+02 Score=30.01 Aligned_cols=41 Identities=24% Similarity=0.232 Sum_probs=30.1
Q ss_pred EEEEEcCCcchhHHHHHHHHhcCcCccccceEEEEecChhhHHHHHhhcc
Q 015173 163 NLVELGPGRGTLMADLLRGASKFKNFTESLHIHLVECSPTLQKLQHHNLK 212 (412)
Q Consensus 163 ~IvEiGaG~GtLa~DIL~~l~~~p~~~~~l~y~iVE~Sp~Lr~~Qk~~L~ 212 (412)
.|+|+=||.|++..-+-+.+ . +++-||.++..-+.-+++++
T Consensus 199 ~vlDlycG~G~fsl~la~~~-------~--~V~gvE~~~~av~~A~~Na~ 239 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA-------K--KVIGVEIVEEAVEDARENAK 239 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS-------S--EEEEEES-HHHHHHHHHHHH
T ss_pred cEEEEeecCCHHHHHHHhhC-------C--eEEEeeCCHHHHHHHHHHHH
Confidence 79999999999988763221 1 68999999998877776664
Done!