Query 015174
Match_columns 412
No_of_seqs 146 out of 366
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 07:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015174.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015174hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.8 1.5E-17 5.2E-22 166.8 29.7 353 4-392 70-432 (451)
2 3o7q_A L-fucose-proton symport 99.7 8.4E-15 2.9E-19 146.3 30.0 306 4-365 69-402 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.7 1.2E-13 3.9E-18 140.6 32.6 352 5-392 63-470 (491)
4 2gfp_A EMRD, multidrug resista 99.6 7.5E-17 2.6E-21 158.6 4.7 317 4-380 43-362 (375)
5 2cfq_A Lactose permease; trans 99.4 3.7E-12 1.3E-16 127.7 13.7 229 108-368 140-373 (417)
6 2xut_A Proton/peptide symporte 99.2 5.7E-10 1.9E-14 114.3 22.3 126 5-147 63-189 (524)
7 4gc0_A D-xylose-proton symport 99.0 2.2E-07 7.4E-12 94.0 27.0 119 239-361 305-423 (491)
8 3o7q_A L-fucose-proton symport 98.4 2.7E-05 9.1E-10 77.0 22.0 129 233-367 48-176 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.3 6.3E-06 2.1E-10 81.8 13.9 125 231-364 48-175 (451)
10 2gfp_A EMRD, multidrug resista 98.3 5.7E-06 2E-10 80.4 12.4 130 232-370 21-150 (375)
11 4aps_A DI-OR tripeptide H+ sym 98.3 3.7E-05 1.3E-09 77.5 18.7 140 232-380 34-182 (491)
12 2xut_A Proton/peptide symporte 98.1 8.2E-05 2.8E-09 75.7 18.4 128 232-367 33-171 (524)
13 4gc0_A D-xylose-proton symport 97.2 0.0051 1.8E-07 61.5 14.9 124 244-367 53-185 (491)
14 2cfq_A Lactose permease; trans 96.5 0.00097 3.3E-08 66.1 2.4 79 207-285 3-82 (417)
15 2kv5_A FST, putative uncharact 43.7 12 0.0004 23.0 1.7 19 115-133 3-21 (33)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=1.5e-17 Score=166.80 Aligned_cols=353 Identities=10% Similarity=-0.008 Sum_probs=204.1
Q ss_pred hhHHHHHHhhhhhcchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccchhHHHHHHHHHHHHHHHHHhh
Q 015174 4 FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAH--TVIPTSSSMLLHPWFFVLVLAGAVERLTGV 81 (412)
Q Consensus 4 ~~~lp~ll~g~~~G~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~ 81 (412)
+..++..+..++.|.+.||++||+++..+.+...+...+. .+.. ... . +.+++.-++.|........
T Consensus 70 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~----~~~~~~~~~------~-~~l~~~~~l~G~~~~~~~~ 138 (451)
T 1pw4_A 70 GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM----GFVPWATSS------I-AVMFVLLFLCGWFQGMGWP 138 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH----HHCHHHHSS------S-SHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH----Hhhhhcccc------H-HHHHHHHHHHHHHhhhccc
Confidence 3467788899999999999999999998877654432211 1100 111 1 2344445566666655555
Q ss_pred hhhhhhcccceeeecCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHHHHHHHHHHHh
Q 015174 82 ALGVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYE-PVTCLKFAAGLIMWSLPVMIILTWFT 160 (412)
Q Consensus 82 a~~~ai~RDwv~~l~~~~~~~~L~~~Ns~l~~id~v~~llgP~lgG~L~~~~~-~~~~~~~~~~~~~~s~~~~~~~l~~~ 160 (412)
+... +..| .++++ +..++++.......++.++||.++|.+....+ |+..+++.+....+.... ..
T Consensus 139 ~~~~-~i~~----~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~------~~ 204 (451)
T 1pw4_A 139 PCGR-TMVH----WWSQK---ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF------AF 204 (451)
T ss_dssp HHHH-HHHT----TCTTT---HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH------HH
T ss_pred hHHH-HHHH----HCCch---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH------HH
Confidence 5443 3334 56643 78999999999999999999999999999898 999877655444433321 11
Q ss_pred hhccccccccccccc-cccCCCCCCCCCCchhhhHHhHHHHHHhHHHHhcCCcchHHHHHHHHH-HHhhhccchHHHHHH
Q 015174 161 NKISSGVLDRAKCSQ-SCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC-LNVVLTPGSLMTAFL 238 (412)
Q Consensus 161 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~a~l~-~t~v~~~~~~~~~y~ 238 (412)
..++|+ +++++..+ ++.+++++.+..+..+. +...++ .-++..+++|.++.......++ +. ...+....+.|+
T Consensus 205 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 279 (451)
T 1pw4_A 205 AMMRDT-PQSCGLPPIEEYKNDYPDDYNEKAEQ-ELTAKQ--IFMQYVLPNKLLWYIAIANVFVYLL-RYGILDWSPTYL 279 (451)
T ss_dssp HHCCCS-STTTCCCSCTTTCCC--------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHB
T ss_pred hhccCC-HhhcCCCChhhhcccccccchhhhhc-cccccc--chHHHHHcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 223331 11111100 00000000000000000 000111 0156678888877754443333 22 233444566677
Q ss_pred Hh-cCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHh--chhhHHHHHHHHHHHHHHHHHHHHhcCCCcCcchHHHHHHHH
Q 015174 239 TQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRL--GILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLI 315 (412)
Q Consensus 239 ~~-~gls~~~~G~~~~~~avggllGt~l~~~l~~R~--g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~~~~~~l~~~g~ 315 (412)
++ +|+++...|++.+...+++++|.++.+++.+|+ |.++...++..... ..+...+...+ . ..........
T Consensus 280 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~--~~~~~~~~~~ 353 (451)
T 1pw4_A 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV---TIATIVYWMNP-A--GNPTVDMICM 353 (451)
T ss_dssp TTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH---HHHHHHTTSCC-T--TCHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHHHHHHHHhc-c--cCHHHHHHHH
Confidence 76 799999999999999999999999999999999 88877665543221 11111111111 0 0111111222
Q ss_pred HHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHH-HHHHHHHHHHhccCC-CchhHHHHHHHHHHHHHHHHHH
Q 015174 316 VLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASL-VESVMLGVAIIANDV-SHFGFLATLSLLSVVGAAWMFC 392 (412)
Q Consensus 316 ~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~-~~ll~~~~~~~~~~~-~~f~~l~~~s~~~v~~~~~~~~ 392 (412)
++.+++..........+.++.+|+++||++.|+.++.++. ...+...+.....+. +......+.+...+.+....+.
T Consensus 354 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 354 IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 2333444445555678889999999999999999999998 776666665444333 3223333334333444433333
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.71 E-value=8.4e-15 Score=146.33 Aligned_cols=306 Identities=10% Similarity=-0.008 Sum_probs=182.3
Q ss_pred hhHHHHHHhhhhhcchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhhh
Q 015174 4 FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVAL 83 (412)
Q Consensus 4 ~~~lp~ll~g~~~G~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~ 83 (412)
+..+...+..++.|.+.||++||+++..+.+...+...+.. ...+.. ..+.+++.-++.|........+.
T Consensus 69 ~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~---~~~~~~-------~~~~l~~~~~l~G~~~~~~~~~~ 138 (438)
T 3o7q_A 69 AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW---PAAEIM-------NYTLFLVGLFIIAAGLGCLETAA 138 (438)
T ss_dssp HHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HHHHTT-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH---hccccc-------cHHHHHHHHHHHHhhHHHhhhhH
Confidence 34567788999999999999999998888765543322110 001111 11344455556666666665554
Q ss_pred hhhhcccceeeecCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcC-------------------------hhH
Q 015174 84 GVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILL-SKYE-------------------------PVT 137 (412)
Q Consensus 84 ~~ai~RDwv~~l~~~~~~~~L~~~Ns~l~~id~v~~llgP~lgG~L~-~~~~-------------------------~~~ 137 (412)
.. +..| .++++ +..+.++..+....++.++||.+++.+. ...+ |+.
T Consensus 139 ~~-~~~~----~~~~~---~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 139 NP-FVTV----LGPES---SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HH-HHHH----SSCST---THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHH----HcCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 33 3334 55643 6788899999999999999999999999 6554 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCCCchhhhHHhHHHHHHhHHHHhcCCcchHHH
Q 015174 138 CLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASL 217 (412)
Q Consensus 138 ~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~ 217 (412)
.+++......+... .....+.||.. ++++. ++ + + ++..+.++..+++|.++...
T Consensus 211 ~~~~~~~~~~~~~~-----~~~~~~~p~~~--~~~~~----~~----~--~---------~~~~~~~~~~~~~~~~~~~~ 264 (438)
T 3o7q_A 211 PYMIIVAIVLLVAL-----LIMLTKFPALQ--SDNHS----DA----K--Q---------GSFSASLSRLARIRHWRWAV 264 (438)
T ss_dssp HHHHHHHHHHHHHH-----HHHHCCCCCCT--TTCCC----CS----S--T---------TSHHHHHHHHTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHcCCccc--ccccc----cc----c--c---------cchhhhHHHHHhChHHHHHH
Confidence 76543332222221 11122333311 10000 00 0 0 11235677889999888755
Q ss_pred HHHHHHHHhhhccchHHHHH-HHh-cCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Q 015174 218 AYVLLCLNVVLTPGSLMTAF-LTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVA 295 (412)
Q Consensus 218 ~~a~l~~t~v~~~~~~~~~y-~~~-~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~ 295 (412)
....++......+....+.| +++ +|+++...|...+...+++++|.++.+++.+|+|+++...++.....++...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~--- 341 (438)
T 3o7q_A 265 LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI--- 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH---
Confidence 54444422123334456677 776 4999999999999999999999999999999999999887766543322221
Q ss_pred HHhcCCCcCcchHHHHHHHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 015174 296 VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAI 365 (412)
Q Consensus 296 ~~~~g~~~~~~~~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~~ 365 (412)
...... ......+++.|+ ..+. .......+.++..|++ +++.++... .++....+...+..
T Consensus 342 ~~~~~~--~~~~~~~~~~g~---~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 342 SAFAGG--HVGLIALTLCSA---FMSI--QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHCCH--HHHHHHHHHHHH---HHTT--HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHcCC--cHHHHHHHHHHH---HHHH--HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence 222211 111111222222 1222 2334455556667766 888888776 55554444444433
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.67 E-value=1.2e-13 Score=140.63 Aligned_cols=352 Identities=12% Similarity=0.024 Sum_probs=188.7
Q ss_pred hHHHHHHhhhhhcchhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhhh
Q 015174 5 SKLILIVGGPLVGKLMDH-SPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVAL 83 (412)
Q Consensus 5 ~~lp~ll~g~~~G~~vDr-~~R~~v~~~~~~~q~~~v~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~ 83 (412)
..+...+..++.|.+.|| ++||+++..+.+...+. +. ...+... . +.+++..++.|..........
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~----~~--~~~~~~~------~-~~~~~~~~l~g~~~~~~~~~~ 129 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG----HI--VLALPFG------A-SALFGSIILIIIGTGFLKPNV 129 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH----HH--HHHSCCS------T-THHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH----HH--HHHHhhh------H-HHHHHHHHHHHHHHHhccchH
Confidence 456778889999999999 89999998886644332 21 2222211 1 234444455555555444433
Q ss_pred hhhhcccceeeecCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015174 84 GVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKI 163 (412)
Q Consensus 84 ~~ai~RDwv~~l~~~~~~~~L~~~Ns~l~~id~v~~llgP~lgG~L~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~ 163 (412)
.++..| .++++++ ...+.++.......++.++||.++|.+.+..+|+..+++.+...+++..... ....+.
T Consensus 130 -~~~~~~----~~~~~~~-~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~---~~~~~~ 200 (491)
T 4aps_A 130 -STLVGT----LYDEHDR-RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY---FGGKKT 200 (491)
T ss_dssp -HHHHHH----HSSSCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HHHHTT
T ss_pred -HHHHHH----HcCcccc-cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HhCccc
Confidence 333445 5554422 4677888888999999999999999999999999988765444444332211 111111
Q ss_pred cccccccccccccccCCCCCCCCCCchhhhHHhHHH-------------------------------------H----HH
Q 015174 164 SSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEA-------------------------------------I----KL 202 (412)
Q Consensus 164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~----~~ 202 (412)
.+ ++.++. + ++.+.++ .++..+. . .+
T Consensus 201 ~~---~~~~~~--~-------~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (491)
T 4aps_A 201 LD---PHYLRP--T-------DPLAPEE-VKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAW 267 (491)
T ss_dssp CC---SCCSCC--S-------CCCSHHH-HHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---ccccCC--C-------Cccccch-hHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHH
Confidence 10 000000 0 0000000 0000000 0 00
Q ss_pred hHHH-----HhcCC--cchHHHHHHHHHHHhhhccchHHHHHHHh-cCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhc
Q 015174 203 GWKE-----YMQQP--VLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLG 274 (412)
Q Consensus 203 g~~~-----~~~~~--v~~~~~~~a~l~~t~v~~~~~~~~~y~~~-~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g 274 (412)
-|+. ..+++ .+........++...........+.|..+ .+.+....|...+..+++.+.++.+.+++.+|+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 347 (491)
T 4aps_A 268 MISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWK 347 (491)
T ss_dssp HC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 0111 01111 12222222222211123344456667765 7888788999999999999999999999999999
Q ss_pred hhhHHH-----HHHHHHHHHHHHHHH-HHhcCCCcCcchHHHHHHHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHH
Q 015174 275 ILKAGA-----AGLIFQASLLAMAVA-VYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT 348 (412)
Q Consensus 275 ~~r~~~-----~~~~~~~~~l~~~v~-~~~~g~~~~~~~~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~ 348 (412)
+++... ++.....++...... ....+.... ........+.++..+|..........+.++..|+++||++.|+
T Consensus 348 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 426 (491)
T 4aps_A 348 KNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGK-VSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSM 426 (491)
T ss_dssp TC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTT-CCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-ccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHH
Confidence 864432 333222211111111 111110000 1111111222233334433445667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHH
Q 015174 349 EISVASLVESVMLGVAIIANDVSHFGFLATLSLLSVVGAAWMFC 392 (412)
Q Consensus 349 ~~sl~~~~~ll~~~~~~~~~~~~~f~~l~~~s~~~v~~~~~~~~ 392 (412)
.+..++....+...+.....+..........+..++.++...+.
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF 470 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999987777777766666655444444445444555444444
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.64 E-value=7.5e-17 Score=158.55 Aligned_cols=317 Identities=14% Similarity=0.078 Sum_probs=183.4
Q ss_pred hhHHHHHHhhhhhcchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhhh
Q 015174 4 FSKLILIVGGPLVGKLMDHSPRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVAL 83 (412)
Q Consensus 4 ~~~lp~ll~g~~~G~~vDr~~R~~v~~~~~~~q~~~v~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~ 83 (412)
+..++..+.+++.|.+.||++|||++..+.+...+...+ ..... ..+.+++..++.|..........
T Consensus 43 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~------~~~~~-------~~~~l~~~~~l~g~~~~~~~~~~ 109 (375)
T 2gfp_A 43 AYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV------AVTTS-------SLTVLIAASAMQGMGTGVGGVMA 109 (375)
T ss_dssp HHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH------HHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH------HHHhc-------cHHHHHHHHHHHHHHHHhhhhhH
Confidence 346778899999999999999999988887655433221 11111 11234444455566555555444
Q ss_pred hhhhcccceeeecCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 015174 84 GVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKI 163 (412)
Q Consensus 84 ~~ai~RDwv~~l~~~~~~~~L~~~Ns~l~~id~v~~llgP~lgG~L~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~ 163 (412)
.. +..| .++++ +..+.++..+....++.++||.++|.+.+..+|+..+++.+....+.. ......+
T Consensus 110 ~~-~~~~----~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 175 (375)
T 2gfp_A 110 RT-LPRD----LYERT---QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT------FSMARWM 175 (375)
T ss_dssp HH-HHHH----HHHTS---SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH------CCCCCSS
T ss_pred HH-HHHH----HCCHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH------HHHHHHC
Confidence 33 2334 45543 678899999999999999999999999998899988765443333322 1112233
Q ss_pred cccccccccccccccCCCCCCCCCCchhhhHHhHHHHHHhHHHHhcCCcchHHHHHHHHH-HHhhhccchHHHHHHHh-c
Q 015174 164 SSGVLDRAKCSQSCCRTSNEGPVPDADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLC-LNVVLTPGSLMTAFLTQ-R 241 (412)
Q Consensus 164 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~a~l~-~t~v~~~~~~~~~y~~~-~ 241 (412)
||+.. ++++ + ++ ..++++..+|+|.++.......++ .. ...+....+.|.++ +
T Consensus 176 ~~~~~--~~~~-----~------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 230 (375)
T 2gfp_A 176 PETRP--VDAP-----R------TR-----------LLTSYKTLFGNSGFNCYLLMLIGGLAG-IAAFEACSGVLMGAVL 230 (375)
T ss_dssp CCCST--TTCC-----C------CC-----------TTTCSTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSCSSHHHH
T ss_pred cccCC--CCcc-----c------cc-----------HHHHHHHHhcCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 43111 0000 0 00 012344556666666543333332 22 12223333445555 7
Q ss_pred CCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH-HHHHHHHHHHHHhcCCCcCcchHHHHHHHHHHhhh
Q 015174 242 GLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF-QASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRL 320 (412)
Q Consensus 242 gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~-~~~~l~~~v~~~~~g~~~~~~~~~l~~~g~~~sr~ 320 (412)
|.++...|.+.+..+++++++..+.+++.+|.|. +. ..+... ............... .....+..+.++..+
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~ 303 (375)
T 2gfp_A 231 GLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-LM-WQSVICCLLAGLLMWIPDWFGV-----MNVWTLLVPAALFFF 303 (375)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-HH-HHHHHHHHHTSSSSSHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 22 222211 000000000010000 011111112222233
Q ss_pred hhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHH
Q 015174 321 GHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLS 380 (412)
Q Consensus 321 GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~~~~~~~~~f~~l~~~s 380 (412)
+.-........+.|+..| ++||+++|..++.++....+...+.....+...+.....+.
T Consensus 304 ~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 304 GAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 443455677777888887 89999999999998876665555544444444444444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=3.7e-12 Score=127.70 Aligned_cols=229 Identities=12% Similarity=0.008 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCCCCCC
Q 015174 108 NAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIMWSLPVMIILTWFTNKISSGVLDRAKCSQSCCRTSNEGPVP 187 (412)
Q Consensus 108 Ns~l~~id~v~~llgP~lgG~L~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 187 (412)
.+..+....++..++|.++|.+.. .+|+..+++.+....+.. . .....+|++++++++. +.++ + +.+
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~--~~~~-~--~~~ 206 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILA------V-LLFFAKTDAPSSATVA--NAVG-A--NHS 206 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHH------H-HSCSSCCCCSCSSCSS--SSSS-S--CCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH------H-HHHHcCcccccccccc--cccc-c--ccc
Confidence 345555567778899999999987 578876654322211111 1 1122222111110000 0000 0 000
Q ss_pred CchhhhHHhHHHHHHhHHHHhcCCcchHHHHHHHHHHHhhhccchHHHHHHHh-cC---CCCchhHHHhhHHHHHHHHHH
Q 015174 188 DADNIVDVGIEAIKLGWKEYMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RG---LNPSIIGGFSGLCASMGVAAT 263 (412)
Q Consensus 188 ~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~a~l~~t~v~~~~~~~~~y~~~-~g---ls~~~~G~~~~~~avggllGt 263 (412)
+ .. .+.++..+++|.++........+......+......|..+ .+ .++..+|+..+.+.++.+++.
T Consensus 207 ~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 276 (417)
T 2cfq_A 207 A------FS----LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp C------CC----HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred c------cc----HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH
Confidence 0 00 1245567788877653332222110011122224455543 33 346678999999999999999
Q ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCcchHHHHHHHHHHhhhhhhhhhhhhhHHhhccCCcccch
Q 015174 264 FLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKAN 343 (412)
Q Consensus 264 ~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~~~~~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G 343 (412)
++.+++.+|+|++|...++.....+... ......+ ....+. ...+..++.-.+......+..|..|++.||
T Consensus 277 ~~~g~l~dr~g~~~~l~~~~~~~~~~~~---~~~~~~~----~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g 347 (417)
T 2cfq_A 277 FFAPLIINRIGGKNALLLAGTIMSVRII---GSSFATS----ALEVVI--LKTLHMFEVPFLLVGCFKYITSQFEVRFSA 347 (417)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHTTCCS----HHHHHH--HTTHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHHhcc----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 9999999999998887765543222111 1111111 111111 111111111112334456788888999999
Q ss_pred hHHHH-HHHHHHHHHHHHHHHHHhcc
Q 015174 344 LIGTT-EISVASLVESVMLGVAIIAN 368 (412)
Q Consensus 344 ~v~g~-~~sl~~~~~ll~~~~~~~~~ 368 (412)
+..+. +++.+.....+...++....
T Consensus 348 ~~~g~~~~~~~~lg~~~gp~l~G~l~ 373 (417)
T 2cfq_A 348 TIYLVCFCFFKQLAMIFMSVLAGNMY 373 (417)
T ss_dssp HHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence 99888 47776665555555544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.25 E-value=5.7e-10 Score=114.29 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=80.0
Q ss_pred hHHHHHHhhhhhcchhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhhhh
Q 015174 5 SKLILIVGGPLVGKLMDHS-PRIPAYICLNTVQAAAQLLSAAMIIHAHTVIPTSSSMLLHPWFFVLVLAGAVERLTGVAL 83 (412)
Q Consensus 5 ~~lp~ll~g~~~G~~vDr~-~R~~v~~~~~~~q~~~v~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~a~ 83 (412)
..+..++..++.|.+.||+ +||+++..+.+...+. .. ...+.... . +.+++..++.|........+.
T Consensus 63 ~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~----~~--~~~~~~~~-----~-~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 63 FVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVG----HA--FLAIFEHS-----V-QGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp HHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHH----HH--HHHHTSSC-----H-HHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----HH--HHHHhccc-----H-HHHHHHHHHHHHhccccchhH
Confidence 4567788899999999999 9999988876544332 11 11122101 1 234444555666655554444
Q ss_pred hhhhcccceeeecCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHH
Q 015174 84 GVAVERDWAVLLAGINRPIALAKANAVLNRIDLLCEIAGASLFGILLSKYEPVTCLKFAAGLIM 147 (412)
Q Consensus 84 ~~ai~RDwv~~l~~~~~~~~L~~~Ns~l~~id~v~~llgP~lgG~L~~~~~~~~~~~~~~~~~~ 147 (412)
.. +..| .+++++.......++.......++.++||.++|.+.+..+|+..+++.+...+
T Consensus 131 ~~-~~~~----~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 131 SS-FMGD----QFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMF 189 (524)
T ss_dssp HH-HHHH----TCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHH
T ss_pred HH-HHHH----HcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 33 2334 45543211345555668888899999999999999998999988876544433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.98 E-value=2.2e-07 Score=93.96 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=75.4
Q ss_pred HhcCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCcchHHHHHHHHHHh
Q 015174 239 TQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFLCLIVLS 318 (412)
Q Consensus 239 ~~~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~~~~~~l~~~g~~~s 318 (412)
+..+.+...........++..+.++++..++.+|+|+++....+.....+++............. ....... .+...
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~--~~~~~ 381 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG-IVALLSM--LFYVA 381 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCH-HHHHHHH--HHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccch-HHHHHHH--HHHHH
Confidence 35688877777777888899999999999999999999988777665444333222222222211 1111111 11111
Q ss_pred hhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHH
Q 015174 319 RLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVML 361 (412)
Q Consensus 319 r~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~ 361 (412)
.++. .+......+..|..|.+.|++..|+..+.++....+..
T Consensus 382 ~~~~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~ 423 (491)
T 4gc0_A 382 AFAM-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVS 423 (491)
T ss_dssp HHHT-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 22233345677888999999999999999988665544
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.43 E-value=2.7e-05 Score=77.01 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCcchHHHHH
Q 015174 233 LMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFFL 312 (412)
Q Consensus 233 ~~~~y~~~~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~~~~~~l~~ 312 (412)
..+.+.+++|+|+.+.|++.+...++..++....+++.+|+|++|...++.....+....+.......+ ...+.
T Consensus 48 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~------~~~l~ 121 (438)
T 3o7q_A 48 LLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN------YTLFL 121 (438)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC------HHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc------HHHHH
Confidence 344456679999999999999999999999999999999999999988877654433322211112111 12222
Q ss_pred HHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 015174 313 CLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIA 367 (412)
Q Consensus 313 ~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~~~~ 367 (412)
.+-++.++|.-..+.+...+..|..|+++||++.+..++.......+...++...
T Consensus 122 ~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 122 VGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445555557778888999999999999999999999988666666664433
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.30 E-value=6.3e-06 Score=81.81 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=88.6
Q ss_pred chHHHHHHHhcCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHh---cCCCcCcch
Q 015174 231 GSLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYW---SGSLSQQNP 307 (412)
Q Consensus 231 ~~~~~~y~~~~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~~---~g~~~~~~~ 307 (412)
....+.|.++. +|+.++|++.+...++..++....+++.+|+|+++...++.....+....+ .+. ..+ ..
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~--~~~~~~~~~----~~ 120 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFM--GFVPWATSS----IA 120 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH--HHCHHHHSS----SS
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHH--Hhhhhcccc----HH
Confidence 33445555678 999999999999999999999999999999999999888776544333322 220 111 11
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 015174 308 LLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVA 364 (412)
Q Consensus 308 ~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~ 364 (412)
.++ .+-++.++|.-....+...+..+..|+++||++++..++.......+...++
T Consensus 121 ~l~--~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 121 VMF--VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHH--HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHH--HHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1222334444446678888999999999999999999988887655555554
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.26 E-value=5.7e-06 Score=80.42 Aligned_cols=130 Identities=7% Similarity=-0.001 Sum_probs=94.6
Q ss_pred hHHHHHHHhcCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCcchHHHH
Q 015174 232 SLMTAFLTQRGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVYWSGSLSQQNPLLFF 311 (412)
Q Consensus 232 ~~~~~y~~~~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~~~~~~l~ 311 (412)
...+.|.+++|.|+.+.|++.+...++..++....+++.+|+|++|...++.....+..... .+.+ ....+
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~-------~~~~l 91 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA--VTTS-------SLTVL 91 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH--HHHH-------HHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH--HHhc-------cHHHH
Confidence 34455667899999999999999999999999999999999999999887776544332222 1111 11112
Q ss_pred HHHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 015174 312 LCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIANDV 370 (412)
Q Consensus 312 ~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~~~~~~~ 370 (412)
..+.++.+++.-.+......+..|..|+++|+++++..+........+...++....+.
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 12233334444446677888888989999999999999999998777777776666543
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.26 E-value=3.7e-05 Score=77.52 Aligned_cols=140 Identities=11% Similarity=0.034 Sum_probs=92.4
Q ss_pred hHHHHHHH-h-----cCCCCchhHHHhhHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHHhcCCCcC
Q 015174 232 SLMTAFLT-Q-----RGLNPSIIGGFSGLCASMGVAATFLSAYLVRR-LGILKAGAAGLIFQASLLAMAVAVYWSGSLSQ 304 (412)
Q Consensus 232 ~~~~~y~~-~-----~gls~~~~G~~~~~~avggllGt~l~~~l~~R-~g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~~ 304 (412)
.....|+. + +|+|+.+.|++.+...++..++..+.+++.+| +|++++..++.....+.... .....+
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~---~~~~~~--- 107 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV---LALPFG--- 107 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH---HHSCCS---
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH---HHHhhh---
Confidence 34667775 4 89999999999999999999999999999999 89999988776643332222 222211
Q ss_pred cchHHHHHHHHHHhhhhhhhhhhhhhHHhhccCCccc--chhHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHH
Q 015174 305 QNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSK--ANLIGTTEISVASLVESVMLGVAIIANDVSHFGFLATLS 380 (412)
Q Consensus 305 ~~~~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~--~G~v~g~~~sl~~~~~ll~~~~~~~~~~~~~f~~l~~~s 380 (412)
...++ .+.++.++|......+...+..+..|+++ ||+..+..++..+....+...++....+...+.....+.
T Consensus 108 -~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 108 -ASALF--GSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp -TTHHH--HHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -HHHHH--HHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 11111 12223344444466677788888889988 666777777777776666655555444333344433333
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.14 E-value=8.2e-05 Score=75.67 Aligned_cols=128 Identities=12% Similarity=0.003 Sum_probs=85.4
Q ss_pred hHHHHHHH-hcC------CCCchhHHHhhHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 015174 232 SLMTAFLT-QRG------LNPSIIGGFSGLCASMGVAATFLSAYLVRRL-GILKAGAAGLIFQASLLAMAVAVYWSGSLS 303 (412)
Q Consensus 232 ~~~~~y~~-~~g------ls~~~~G~~~~~~avggllGt~l~~~l~~R~-g~~r~~~~~~~~~~~~l~~~v~~~~~g~~~ 303 (412)
.....|+. ++| +|+.+.|++.+...++.+++....+++.+|+ |++|+..++.....+..... .+...+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~--~~~~~~-- 108 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL--AIFEHS-- 108 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH--HHTSSC--
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH--HHhccc--
Confidence 34566765 578 9999999999999999999999999999999 99998887765433222221 222101
Q ss_pred CcchHHHHHHHHHHhhhhhhhhhhhhhHHhhccCCcccchhHHHH---HHHHHHHHHHHHHHHHHhc
Q 015174 304 QQNPLLFFLCLIVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTT---EISVASLVESVMLGVAIIA 367 (412)
Q Consensus 304 ~~~~~~l~~~g~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~---~~sl~~~~~ll~~~~~~~~ 367 (412)
.. .+..+.++.++|.-....+...+..+..|+++||+.++. .++..+....+...++...
T Consensus 109 --~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 109 --VQ--GFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp --HH--HHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred --HH--HHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111222333444444667778888999999999988777 6666665555555444333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.21 E-value=0.0051 Score=61.49 Aligned_cols=124 Identities=8% Similarity=-0.036 Sum_probs=80.8
Q ss_pred CCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH-hcC--CC--c----CcchHHHHHHH
Q 015174 244 NPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIFQASLLAMAVAVY-WSG--SL--S----QQNPLLFFLCL 314 (412)
Q Consensus 244 s~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~~~~~l~~~v~~~-~~g--~~--~----~~~~~~l~~~g 314 (412)
++...|++.+..-+|.++|+++.+++.+|+|++++..++.....+..+.+.... ... .. . .......+..+
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 345678888999999999999999999999999999888765444333321100 000 00 0 00112223334
Q ss_pred HHHhhhhhhhhhhhhhHHhhccCCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 015174 315 IVLSRLGHMSYDIVGAQILQTGIPSSKANLIGTTEISVASLVESVMLGVAIIA 367 (412)
Q Consensus 315 ~~~sr~GLw~~dl~~~~l~Q~~vp~~~~G~v~g~~~sl~~~~~ll~~~~~~~~ 367 (412)
=++.++|.-..-.....+..|..|+++||+..+..........++.+......
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~ 185 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFI 185 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhh
Confidence 33444455445566777889999999999999998887776666555554443
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=96.47 E-value=0.00097 Score=66.06 Aligned_cols=79 Identities=11% Similarity=0.031 Sum_probs=59.5
Q ss_pred HhcCCcchHHHHHHHHHHHhhhccchHHHHHHHh-cCCCCchhHHHhhHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 015174 207 YMQQPVLPASLAYVLLCLNVVLTPGSLMTAFLTQ-RGLNPSIIGGFSGLCASMGVAATFLSAYLVRRLGILKAGAAGLIF 285 (412)
Q Consensus 207 ~~~~~v~~~~~~~a~l~~t~v~~~~~~~~~y~~~-~gls~~~~G~~~~~~avggllGt~l~~~l~~R~g~~r~~~~~~~~ 285 (412)
++|||.++.......+++..........+.|+++ +|+|+.+.|++.+...++..++..+.+++.+|+|++|...++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~ 82 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG 82 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5677777664443333321112234457788875 899999999999999999999999999999999999998876553
No 15
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=43.70 E-value=12 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 015174 115 DLLCEIAGASLFGILLSKY 133 (412)
Q Consensus 115 d~v~~llgP~lgG~L~~~~ 133 (412)
|.+..++||.++|.++..+
T Consensus 3 ~i~~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 3 DLMSLVIAPIFVGLVLEMI 21 (33)
T ss_dssp TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999887643
Done!