BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015176
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V5U|A Chain A, Solution Structure Of The C-Terminal Pleckstrin Homology
           Domain Of Sbf1 From Mouse
          Length = 117

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 358 PRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILN 406
           P  P   +    +++A+F +KT  RV  F  ++    Q WV+ IQ  L+
Sbjct: 63  PGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111


>pdb|4E0I|A Chain A, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
           Saccharomyces Cerevisiae
 pdb|4E0I|B Chain B, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
           Saccharomyces Cerevisiae
 pdb|4E0I|C Chain C, Crystal Structure Of The C30s/c133s Mutant Of Erv1 From
           Saccharomyces Cerevisiae
          Length = 189

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 73  PPSSDVEACGASSTVLTESVANEGSAPISPRDSE--EMREIFVLHQALHP 120
           PP  DVE  G SS  L  SVA   S P  P D +  EM++   +   ++P
Sbjct: 84  PP--DVEQLGRSSWTLLHSVA--ASYPAQPTDQQKGEMKQFLNIFSHIYP 129


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,674,983
Number of Sequences: 62578
Number of extensions: 324829
Number of successful extensions: 506
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 3
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)