BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015176
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61824|ADA12_MOUSE Disintegrin and metalloproteinase domain-containing protein 12
OS=Mus musculus GN=Adam12 PE=1 SV=2
Length = 903
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 162 NAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAVASAAALVASHCIEIA 221
NAQL + V G +A I + T Q V S AAV A E+
Sbjct: 300 NAQLISGVYFQGTTIGMAPIMSMCTAEQSGGVVMDHSDSPLGAAVTLAH--------ELG 351
Query: 222 EDMGADHDQILTVVNSAVNARTNGDIMTLTAGAATALRGAAT----LRARLQKGYGMTTI 277
+ G +HD + + + A G IM + G + ++ L A L+KG GM
Sbjct: 352 HNFGMNHDTLERGCSCRMAAEKGGCIMNPSTGFPFPMVFSSCSRKDLEASLEKGMGMCLF 411
Query: 278 SLAEEK 283
+L E K
Sbjct: 412 NLPEVK 417
>sp|Q3SWT5|S41A3_RAT Solute carrier family 41 member 3 OS=Rattus norvegicus GN=Slc41a3
PE=2 SV=1
Length = 462
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 149 DQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAVAS 208
D ++ + + I ++ A + +VVG+ AA+A++ T + +E + C +S A
Sbjct: 108 DDRQERYRIISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWAKVALLCTSSVITAF 167
Query: 209 AAAL---VASHCIEI-AEDMGADHDQILTVVNSAVNARTNGDIMTLTAGA 254
AAL + CI I A G + D I T + A + GD++TL+ A
Sbjct: 168 LAALALGILMICIVIGARKFGVNPDNIATPI-----AASLGDLITLSILA 212
>sp|Q921R8|S41A3_MOUSE Solute carrier family 41 member 3 OS=Mus musculus GN=Slc41a3 PE=2
SV=1
Length = 488
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 147 LKDQKERKKQEIRAHNAQLHAAVSVVGVAAAIAAITAATTTSQEMTTVQQKSSCKTSAAV 206
+ D++ER K I ++ A + +VVG+ AA+A++ T + +E + C +S
Sbjct: 133 IDDRQERYKI-ISSNLAVVQVQATVVGLLAAVASLMLGTVSHEEFDWSKVALLCTSSVIT 191
Query: 207 ASAAAL---VASHCIEI-AEDMGADHDQILTVVNSAVNARTNGDIMTLT 251
A AAL + CI I A G + D I T + A + GD++TL+
Sbjct: 192 AFLAALALGILMICIVIGARKFGVNPDNIATPI-----AASLGDLITLS 235
>sp|Q6NTN5|MTMRD_XENLA Myotubularin-related protein 13 OS=Xenopus laevis GN=sbf2 PE=2 SV=1
Length = 1873
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 357 IPRWPPRESEDDSEQRAYFGIKTADRVIEFECRNKGDKQMWVEGIQHILNCCAN 410
+P P + + ++A+F +KT+ RV F ++ Q+W++ IQ NC ++
Sbjct: 1822 VPAAPTIGAPKHANEKAFFDVKTSKRVYNFCAQDAQSAQLWMDKIQ---NCISD 1872
>sp|Q8TVL0|Y1379_METKA UPF0219 protein MK1379 OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=MK1379 PE=3 SV=1
Length = 350
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 181 ITAATTTSQEMTTVQQKSSCKT-SAAVASAAALVASHCIEIAEDMGADHDQILTVVNSAV 239
+ AA + ++T + +CK +AA+ + A LVAS I+ +GAD Q
Sbjct: 98 VAAAIGATPDLTAADYEFACKAGTAAIQTCAGLVASGMIKYGLAIGADTAQ--------- 148
Query: 240 NARTNGDIMTLT--AGAATALRGAATLRARLQKGYGMTT 276
GD + T AG A + G L A ++ Y TT
Sbjct: 149 --GAPGDPLEYTAAAGGAAFVIGRKKLVAEMEGTYSYTT 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.125 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,399,354
Number of Sequences: 539616
Number of extensions: 5175468
Number of successful extensions: 13790
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 13687
Number of HSP's gapped (non-prelim): 137
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)