BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015177
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 187 NDLGWACVLVLESLIPVMVD---PVIGKMRMLVTPSVKEKAKEIAER---WKASLEERGG 240
ND W VLES +PVMVD P G + L+ P + E AKE + + +K + +E G
Sbjct: 5 NDSSWK-EFVLESEVPVMVDFWAPWCGPCK-LIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 241 I 241
I
Sbjct: 63 I 63
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 187 NDLGWACVLVLESLIPVMVD---PVIGKMRMLVTPSVKEKAKEIAER---WKASLEERGG 240
ND W VLES +PVMVD P G + L+ P + E AKE + + +K + +E G
Sbjct: 6 NDSSWK-EFVLESEVPVMVDFWAPWCGPCK-LIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 241 I 241
I
Sbjct: 64 I 64
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 190 GWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKT 246
GW L+L +++P++ + +M+ML ++K+K KE+ K + E IEN +T
Sbjct: 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDK-KELEGSGKIATE---AIENFRT 902
>pdb|3ZRP|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRP|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRQ|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|A Chain A, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
pdb|3ZRR|B Chain B, Crystal Structure And Substrate Specificity Of A
Thermophilic Archaeal Serine : Pyruvate Aminotransferase
From Sulfolobus Solfataricus
Length = 384
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 237 ERGGIENVKTPDVHTFLQLLVTFGIVKKEDVD--LYRKLVVGSAWRKQMPKLAVSL 290
E G TP VH LQL F +++KE ++ + R +V SA R + L + +
Sbjct: 234 EEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEI 289
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 190 GWACVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKT 246
GW L+L +++P++ + +M+ML ++K+K KE+ K + E IEN +T
Sbjct: 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDK-KELEGSGKIATE---AIENFRT 902
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 187 NDLGWACVLVLESLIPVMVD---PVIGKMRMLVTPSVKEKAKEIAER---WKASLEERGG 240
ND W VLES +PVMVD P G + L+ P + E AKE + + +K + +E G
Sbjct: 6 NDSSWK-EFVLESEVPVMVDFWAPWCGPSK-LIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 241 I 241
I
Sbjct: 64 I 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,135,580
Number of Sequences: 62578
Number of extensions: 358239
Number of successful extensions: 921
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 7
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)