BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015177
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0DH90|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 609
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 22/225 (9%)
Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
C M ++G K++ + +L +P+AL +PAKFV++ I + + +R+ +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208
Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
+ A +L+LES + + P GK ++ + +K++A+ A W+ L GG+
Sbjct: 209 PMSSARQVSLLILESFL---LMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265
Query: 245 KTPDVHTFLQLLVTFGI---VKKED-VDLYR----KLVVGSAWRKQMPKLAVSLGLGDKM 296
+ D L L+ FG+ + D +DL R + G+ R Q V + G
Sbjct: 266 EKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQ---FLVPMVSG--- 319
Query: 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKA 341
++E I RG ++A+ Y G+ DKF +L +FLK +K++
Sbjct: 320 --IVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSKES 362
>sp|Q67Z93|FRIG0_ARATH Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 314
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
C M ++G K++ + +L +P+AL +PAKFV++ I + + +R+ +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208
Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
+ A +L+LES ++ P GK ++ + +K++A+ A W+ L GG+
Sbjct: 209 PMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265
Query: 245 KTPDVHTFLQLLVTFGI 261
+ D L L+ FG+
Sbjct: 266 EKMDARGLLLLVACFGV 282
>sp|Q5ND29|RILP_MOUSE Rab-interacting lysosomal protein OS=Mus musculus GN=Rilp PE=1 SV=1
Length = 369
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 56 LRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEK 91
LRHK+ + TQ +A+ D ++R++ DGS ++A E+
Sbjct: 157 LRHKLAAVQTQLRAAQDRERERQIAQDGSSQLAKEQ 192
>sp|B2A611|ADDB_NATTJ ATP-dependent helicase/deoxyribonuclease subunit B
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=addB PE=3 SV=1
Length = 1186
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 235 LEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD 294
LEE+GGI D + ++ + +K+D+++ K+ V S + +++ +L + +
Sbjct: 76 LEEQGGIAKADLSDTGKEM-IIKNILLQRKDDLEILEKVAVKSGFSEKLSRLISEARMYE 134
Query: 295 KMPEMIEELISRGQQLDAVHF 315
PEM+E++ Q+LD +H
Sbjct: 135 ITPEMLEQI---SQELDLIHL 152
>sp|A8FG94|THII_BACP2 Probable tRNA sulfurtransferase OS=Bacillus pumilus (strain
SAFR-032) GN=thiI PE=3 SV=1
Length = 401
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 243 NVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEE 302
NVK PDVH +++ + +DV L VGS+ R + L G P +
Sbjct: 142 NVKQPDVHLRIEIREQATYITFKDVKGAGGLPVGSSGRAML-----MLSGGFDSPVAGYQ 196
Query: 303 LISRGQQLDAVHF 315
+ RG Q++AVHF
Sbjct: 197 AMKRGIQIEAVHF 209
>sp|Q8VDC1|FYCO1_MOUSE FYVE and coiled-coil domain-containing protein 1 OS=Mus musculus
GN=Fyco1 PE=1 SV=1
Length = 1437
Score = 32.0 bits (71), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 47 QNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGSV------EIAMEKLEDRTEATL 100
QN+ ++ L K+Q L T KA L++RE I GS+ + ++ L ++ EA+L
Sbjct: 590 QNMVDRNQLLEGKLQALQTDYKA----LQQREAAIQGSLASLEAEQASIRHLGNQMEASL 645
Query: 101 NSISRGQELGDGEVDDGDGLLMILMSYCLKME 132
++ + +E +V + + L S C +++
Sbjct: 646 LAVKKAKETMKAQVAEKEAALQSKESECQRLQ 677
>sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh OS=Staphylococcus aureus
(strain MW2) GN=ebh PE=1 SV=1
Length = 9904
Score = 32.0 bits (71), Expect = 7.9, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 58 HKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRGQELGDGEVDDG 117
H ++ + Q +A ++ + TI+ + A++ +ED + ++ I +L D E +
Sbjct: 9466 HSVEEIQQQEQAHIEQFNPEQFTIEQAKSNAIKSIEDAIQHMIDEIKARTDLTDKEKQEA 9525
Query: 118 DGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEV-- 175
L L ++ R + + +++E+ + + AA + AK EAIS +
Sbjct: 9526 IAKLNQLKEQAIQAIQRA--QSIDEITEQLEQFKAQMKAANPTAKELAKRKQEAISRIKD 9583
Query: 176 FPVDKRSDKSGNDLGWA 192
F +K + +++G A
Sbjct: 9584 FSNEKMNSIRNSEIGTA 9600
>sp|P45181|PQQL_HAEIN Probable zinc protease PqqL OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=pqqL PE=3 SV=1
Length = 926
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 223 KAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVK-KEDVDLYRKLVVGSAWRK 281
+ K++AER+ AS+E + I + +HT Q + G+ + + DV++Y L + WR
Sbjct: 712 QVKKLAERYLASIESKTQIRHFVPTIIHTPTQSFIMNGLKEPRADVEIY--LTADNTWRT 769
Query: 282 QMPKL 286
+ L
Sbjct: 770 EQKYL 774
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,225,498
Number of Sequences: 539616
Number of extensions: 5890799
Number of successful extensions: 18566
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 18542
Number of HSP's gapped (non-prelim): 57
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)