Query 015177
Match_columns 412
No_of_seqs 133 out of 154
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 03:50:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 6.2E-83 1.4E-87 628.1 26.0 259 116-388 7-267 (290)
2 PF07035 Mic1: Colon cancer-as 95.6 0.034 7.3E-07 51.7 6.6 80 250-333 45-129 (167)
3 PRK06771 hypothetical protein; 46.7 30 0.00066 29.5 4.0 34 285-318 41-77 (93)
4 PF09726 Macoilin: Transmembra 39.5 2.3E+02 0.0051 32.2 10.7 60 18-77 424-496 (697)
5 PF04124 Dor1: Dor1-like famil 37.5 52 0.0011 33.5 4.9 51 296-346 109-160 (338)
6 PF12925 APP_E2: E2 domain of 36.6 1.9E+02 0.0041 27.8 8.1 94 4-106 18-123 (193)
7 PF06705 SF-assemblin: SF-asse 36.4 4.1E+02 0.0088 25.8 11.1 53 120-175 180-234 (247)
8 PF08711 Med26: TFIIS helical 36.2 38 0.00083 25.0 2.8 21 216-236 33-53 (53)
9 KOG2377 Uncharacterized conser 36.1 36 0.00078 37.0 3.5 83 250-341 528-615 (657)
10 PF06825 HSBP1: Heat shock fac 30.1 1E+02 0.0022 23.8 4.2 33 34-66 11-43 (54)
11 smart00502 BBC B-Box C-termina 28.9 2.5E+02 0.0054 23.1 6.9 53 10-62 15-68 (127)
12 PF12825 DUF3818: Domain of un 27.4 3.7E+02 0.008 27.9 9.1 116 126-262 95-218 (341)
13 PF13874 Nup54: Nucleoporin co 26.1 1.7E+02 0.0036 26.2 5.6 22 3-24 17-38 (141)
14 PF04156 IncA: IncA protein; 26.0 3.3E+02 0.0071 24.9 7.8 48 14-64 93-143 (191)
15 PF10498 IFT57: Intra-flagella 24.0 4E+02 0.0087 27.9 8.7 47 21-67 222-268 (359)
16 PF08946 Osmo_CC: Osmosensory 22.1 1.1E+02 0.0025 22.9 3.0 26 38-63 10-38 (46)
17 PF07763 FEZ: FEZ-like protein 21.3 3.7E+02 0.0079 26.9 7.3 61 1-61 127-199 (244)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=6.2e-83 Score=628.09 Aligned_cols=259 Identities=42% Similarity=0.657 Sum_probs=243.5
Q ss_pred CcchhHHHHHHHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCC--CCCchhHHHH
Q 015177 116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD--KSGNDLGWAC 193 (412)
Q Consensus 116 ~~~~~~~~L~~lCe~MD~~gL~~fi~~~~ke~~~lr~Eip~ALr~ApDPAkLVLdai~~fy~~~~~~~--~~~~~~~~aC 193 (412)
...+++++|+.||++|||+||++||++|+|++.+||+|+|+||++|||||+||||||+|||+++.+.+ ....+.+|+|
T Consensus 7 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~c 86 (290)
T PF07899_consen 7 VEVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRAC 86 (290)
T ss_pred CCcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHH
Confidence 35568999999999999999999999999999999999999999999999999999999999876543 3355789999
Q ss_pred HHHHHhhcccccCcccccccCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcCCCccCHHHHHHH
Q 015177 194 VLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKL 273 (412)
Q Consensus 194 ilLLE~L~~~l~~p~~g~~~p~v~~~vke~Ak~lA~~WK~~l~~~g~~~~~~~lea~gFLqlla~fGI~seFd~del~~L 273 (412)
|+|||+|++ .+|.++|+||++|+++|.+||++|+ +.++.+++|||||||||++|||+++||.|||++|
T Consensus 87 ilLLE~L~~---------~~~~is~~vke~A~~lA~~WK~~l~---~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~L 154 (290)
T PF07899_consen 87 ILLLEQLMR---------ISPEISPEVKEEAKKLAEEWKSKLD---GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKL 154 (290)
T ss_pred HHHHHHHhh---------cCCCCCHHHHHHHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHH
Confidence 999999986 3578999999999999999999996 4567889999999999999999999999999999
Q ss_pred hhccccccchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCCcCCCChHHHHHHHHHHHHHHHHHhcCCCchh
Q 015177 274 VVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAG 353 (412)
Q Consensus 274 v~~va~rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~dkFpPvpLLK~yl~~akk~a~~i~~~~~~~~ 353 (412)
|..+++|+|+|+||++|||++||||||++||++||||+||+|||+|||+||||||||||+||+++|++++.++++++++
T Consensus 155 v~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~- 233 (290)
T PF07899_consen 155 VVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS- 233 (290)
T ss_pred HHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred hhhhhhhhhhhhhhhhHHHHHhhhhcccccCCCCc
Q 015177 354 RAALWKVEAQDVGNFCTFISYTLLHAKSSQLSGPS 388 (412)
Q Consensus 354 ~~~~~~~~~~ela~L~~vik~ie~~kl~s~~~~~~ 388 (412)
..+++++++|+++||+||||||+||+||++|...
T Consensus 234 -~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~ 267 (290)
T PF07899_consen 234 -EAQNEANEKELAALKSVIKCIEEHKLESEFPLEP 267 (290)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhccccccChHH
Confidence 7889999999999999999999999999998775
No 2
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.56 E-value=0.034 Score=51.74 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCCCccCHHHHHHHhhcccc-----ccchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCCcC
Q 015177 250 HTFLQLLVTFGIVKKEDVDLYRKLVVGSAW-----RKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDK 324 (412)
Q Consensus 250 ~gFLqlla~fGI~seFd~del~~Lv~~va~-----rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~dk 324 (412)
...|+.+..|++.+ |...+...+.+... ++-+...++.||..+ ..||+.|+.+|++++|++||...+-++.
T Consensus 45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~--~~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAY--EEIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhH--HHHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 47788888999998 77776665554432 223445556666554 3577899999999999999999999999
Q ss_pred CCChHHHHH
Q 015177 325 FPPVPLLKA 333 (412)
Q Consensus 325 FpPvpLLK~ 333 (412)
.||.-+|.+
T Consensus 121 ~~~~~fLeA 129 (167)
T PF07035_consen 121 VPARKFLEA 129 (167)
T ss_pred CCHHHHHHH
Confidence 998766543
No 3
>PRK06771 hypothetical protein; Provisional
Probab=46.71 E-value=30 Score=29.53 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=29.3
Q ss_pred HHHHHcCCCCC---hHHHHHHHHhcCcchHHHHHHHH
Q 015177 285 KLAVSLGLGDK---MPEMIEELISRGQQLDAVHFTYE 318 (412)
Q Consensus 285 eL~~sLGL~~K---mpdiI~~LI~~Gk~ieAV~f~~a 318 (412)
.++.-+|+.+- +++=+..|+..||.|+||+..++
T Consensus 41 ~I~~~~Gi~~~~~~~~~e~~~Li~~Gkki~AIK~~Re 77 (93)
T PRK06771 41 LITKEMGIVDREPPVNKELRQLMEEGQTVTAVKRVRE 77 (93)
T ss_pred HHHHHcCCCCCcccccHHHHHHHHcCCchHHHHHHHH
Confidence 47788898877 67778899999999999999875
No 4
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=39.52 E-value=2.3e+02 Score=32.19 Aligned_cols=60 Identities=28% Similarity=0.375 Sum_probs=36.3
Q ss_pred HHHHHhhhhhhhhhcccHHHHHhhHHHHHHH----------HHHHHHHHHHHHhhhhhh---hhhHHHHhhhh
Q 015177 18 FDEFQRQTSLMTSCTLLWKELSDHFTSLEQN----------LQKKSAALRHKIQTLDTQ---TKASLDVLKKR 77 (412)
Q Consensus 18 F~eLqs~~s~l~s~tl~W~eL~~HF~sLe~s----------L~~r~~~L~~k~~~~e~~---~~~~~~~l~~r 77 (412)
=.|+++.++-|.+....=.||-.|.++|..+ +++.-++|+.|...+... .+.++..|++|
T Consensus 424 E~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 424 EADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666677788886666655 666666666665555332 23455566555
No 5
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=37.53 E-value=52 Score=33.46 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=43.7
Q ss_pred hHHHHHHHHhcCcchHHHHHH-HHhcCCcCCCChHHHHHHHHHHHHHHHHHh
Q 015177 296 MPEMIEELISRGQQLDAVHFT-YEVGLVDKFPPVPLLKAFLKDAKKAAVSIL 346 (412)
Q Consensus 296 mpdiI~~LI~~Gk~ieAV~f~-~aF~L~dkFpPvpLLK~yl~~akk~a~~i~ 346 (412)
+|.+++..|.+|.|=+|..+. |.=-|..+||-+|+.++...++....+.+.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 578888999999999999985 555799999999999999999987766544
No 6
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=36.58 E-value=1.9e+02 Score=27.83 Aligned_cols=94 Identities=13% Similarity=0.254 Sum_probs=55.3
Q ss_pred CCCCCchhhcchhHHHHHHh-hhhhhhhhcccHHHHHhhHHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhHH
Q 015177 4 IPDPGELSELNPLSFDEFQR-QTSLMTSCTLLWKELSDHFTSL-----------EQNLQKKSAALRHKIQTLDTQTKASL 71 (412)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs-~~s~l~s~tl~W~eL~~HF~sL-----------e~sL~~r~~~L~~k~~~~e~~~~~~~ 71 (412)
.|||..--+..++|=..|+. |+-=++-.--.|+++++++..+ .+.|..||+..-....+=... +..
T Consensus 18 ~~~~~~Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~--er~ 95 (193)
T PF12925_consen 18 HPDPENEHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQEAAA--ERQ 95 (193)
T ss_dssp SSTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 46777667778888888864 4444455668999999999765 566777777654333221111 111
Q ss_pred HHhhhhccccccchHHHHHhhhhhhHHHHhhhhcc
Q 015177 72 DVLKKREVTIDGSVEIAMEKLEDRTEATLNSISRG 106 (412)
Q Consensus 72 ~~l~~re~~i~~~~~~~l~~l~e~~~aa~~si~~~ 106 (412)
++. ..-.+-...-|.++|.+|+.....+
T Consensus 96 qL~-------~~H~qRV~a~Lnerkr~al~~y~~a 123 (193)
T PF12925_consen 96 QLV-------ETHQQRVQAMLNERKRAALENYTAA 123 (193)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1112222344577888888775543
No 7
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=36.44 E-value=4.1e+02 Score=25.76 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=28.7
Q ss_pred hHHHHHHHhhh--cchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcc
Q 015177 120 LLMILMSYCLK--MEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEV 175 (412)
Q Consensus 120 ~~~~L~~lCe~--MD~~gL~~fi~~~~ke~~~lr~Eip~ALr~ApDPAkLVLdai~~f 175 (412)
++..+..+|.. -+-.+++.|+.+ ++..|+..|-..-..=-+---.+++||..|
T Consensus 180 l~~~le~~~~~~~~~~e~f~~~v~~---Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~y 234 (247)
T PF06705_consen 180 LRSELEEVKRRREKGDEQFQNFVLE---EIAALKNALALESQEREQSDDDIVQALNHY 234 (247)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45566666642 224455555554 456666666444444444445666666554
No 8
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=36.19 E-value=38 Score=24.97 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHHHHHHhh
Q 015177 216 VTPSVKEKAKEIAERWKASLE 236 (412)
Q Consensus 216 v~~~vke~Ak~lA~~WK~~l~ 236 (412)
-++++++.|+.+-..||..++
T Consensus 33 ~~~~i~~~A~~Li~~Wk~~v~ 53 (53)
T PF08711_consen 33 ENPEIRKLAKELIKKWKRIVD 53 (53)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHhHhcC
Confidence 568999999999999998763
No 9
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=36 Score=37.05 Aligned_cols=83 Identities=24% Similarity=0.351 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCccCHHHHHHHhhccccc-----cchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCCcC
Q 015177 250 HTFLQLLVTFGIVKKEDVDLYRKLVVGSAWR-----KQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDK 324 (412)
Q Consensus 250 ~gFLqlla~fGI~seFd~del~~Lv~~va~r-----kq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~dk 324 (412)
..-|..+.+|.+.+ +..++..++...++. +-+....+.|. ---++|+.|+.+|++|+|+|||.--+=.++
T Consensus 528 F~~L~~f~~y~il~--~SK~VAc~LLs~~~~~~~~~ql~lDML~rls---aH~~iIevll~~G~vl~ALR~A~~~~g~~~ 602 (657)
T KOG2377|consen 528 FYMLHQFLQYHVLS--DSKPVACLLLSLESFYPPAHQLSLDMLKRLS---AHDEIIEVLLSKGQVLAALRFARGIGGHDN 602 (657)
T ss_pred HHHHHHHHhhhhcc--CCcceeEEEecccCcCccHHHHhHHHHhhhh---hhHHHHHHHHcCchHHHHHHHHhhccCccc
Confidence 35566677777776 333333222222221 11222223322 235899999999999999999996666666
Q ss_pred CCChHHHHHHHHHHHHH
Q 015177 325 FPPVPLLKAFLKDAKKA 341 (412)
Q Consensus 325 FpPvpLLK~yl~~akk~ 341 (412)
-|- +-||+-|+++
T Consensus 603 V~a----rkFLEAA~~t 615 (657)
T KOG2377|consen 603 VSA----RKFLEAAKQT 615 (657)
T ss_pred ccH----HHHHHHHhcc
Confidence 553 3355555443
No 10
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=30.12 E-value=1e+02 Score=23.80 Aligned_cols=33 Identities=15% Similarity=0.462 Sum_probs=28.2
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015177 34 LWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQ 66 (412)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~~~L~~k~~~~e~~ 66 (412)
.-.+++++|..+-..|-.|.++...+.-.+|..
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~s 43 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKS 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 457899999999999999999999888887754
No 11
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.86 E-value=2.5e+02 Score=23.11 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=35.4
Q ss_pred hhhcchhHHHHHHhhhhhh-hhhcccHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 015177 10 LSELNPLSFDEFQRQTSLM-TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQT 62 (412)
Q Consensus 10 ~~e~l~kaF~eLqs~~s~l-~s~tl~W~eL~~HF~sLe~sL~~r~~~L~~k~~~ 62 (412)
+.+.+..+...|+.....+ .++.-.+.++..+|..|.+.|..|=..|-.+...
T Consensus 15 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 15 KAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555554 4667778888888888888888777776555433
No 12
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=27.39 E-value=3.7e+02 Score=27.91 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred HHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCCCCCchhH--------HHHHHHH
Q 015177 126 SYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLG--------WACVLVL 197 (412)
Q Consensus 126 ~lCe~MD~~gL~~fi~~~~ke~~~lr~Eip~ALr~ApDPAkLVLdai~~fy~~~~~~~~~~~~~~--------~aCilLL 197 (412)
+|..+|-+-.|-.=+.+-.|....++..+ +-..-++++|..|.-.+... .+ ..| -.++.+|
T Consensus 95 sLlQrifs~~L~~d~~~~~k~i~~le~~i--------~~~~~~~~~ik~~v~~~~~~-~~--~ir~~s~~~~~~iv~~IL 163 (341)
T PF12825_consen 95 SLLQRIFSMVLNDDIKEFEKEIDKLEKKI--------GDSPEMCEKIKAFVYAPREE-KD--EIREESEEENEDIVVAIL 163 (341)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHHHhh--------cCHHHHHHHHHHHHcCCHHH-HH--HHHHHHHHcCCCchHHHH
Confidence 34444444444333333444444554444 33889999999986432211 00 111 1255555
Q ss_pred HhhcccccCcccccccCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcCC
Q 015177 198 ESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIV 262 (412)
Q Consensus 198 E~L~~~l~~p~~g~~~p~v~~~vke~Ak~lA~~WK~~l~~~g~~~~~~~lea~gFLqlla~fGI~ 262 (412)
+.-- ..|.+++..-++-...-..|+..........+....+|+-|.++---|.+-
T Consensus 164 ~~~~----------~~p~L~~~~~~~v~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~ 218 (341)
T PF12825_consen 164 RSSD----------IEPKLSPEQLQRVLESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLY 218 (341)
T ss_pred hCCC----------CCCCCCHHHHHHHHHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHHH
Confidence 5332 136788888889999999999988543222334456788887765444433
No 13
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=26.09 E-value=1.7e+02 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.632 Sum_probs=0.0
Q ss_pred CCCCCCchhhcchhHHHHHHhh
Q 015177 3 SIPDPGELSELNPLSFDEFQRQ 24 (412)
Q Consensus 3 ~~~~~~~~~e~l~kaF~eLqs~ 24 (412)
.-|||+.+..-.=.+|.||...
T Consensus 17 ~nPdP~~~~Pv~i~GF~dL~~R 38 (141)
T PF13874_consen 17 DNPDPSRLIPVPIIGFEDLKKR 38 (141)
T ss_dssp ----------------------
T ss_pred HCcCCcCeeeehhhhHHHHHHH
Confidence 3599998998888999998654
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.97 E-value=3.3e+02 Score=24.94 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=21.7
Q ss_pred chhHHHHHHhhhhhhhhhcccHHHHHhhHHHHH---HHHHHHHHHHHHHHhhhh
Q 015177 14 NPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE---QNLQKKSAALRHKIQTLD 64 (412)
Q Consensus 14 l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe---~sL~~r~~~L~~k~~~~e 64 (412)
+++-+++++.+.. ...-.+..+.+-+..++ ++...|.+.+++..+.+.
T Consensus 93 l~~el~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 93 LQEELDQLQERIQ---ELESELEKLKEDLQELRELLKSVEERLDSLDESIKELE 143 (191)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433 34444444444444444 344444444444444443
No 15
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.00 E-value=4e+02 Score=27.86 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=32.3
Q ss_pred HHhhhhhhhhhcccHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 015177 21 FQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQT 67 (412)
Q Consensus 21 Lqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~~~L~~k~~~~e~~~ 67 (412)
|+.-+....++.-.+.+...|+..|++.+.+-.+.+.++++.+.++.
T Consensus 222 leqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~ql 268 (359)
T PF10498_consen 222 LEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQL 268 (359)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444456667788888888888888888888887777665553
No 16
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.06 E-value=1.1e+02 Score=22.87 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=11.1
Q ss_pred HHhhHHHHHHHH---HHHHHHHHHHHhhh
Q 015177 38 LSDHFTSLEQNL---QKKSAALRHKIQTL 63 (412)
Q Consensus 38 L~~HF~sLe~sL---~~r~~~L~~k~~~~ 63 (412)
|.+|+..+|+.+ .....+|+.|.+.+
T Consensus 10 Lqe~~d~IEqkiedid~qIaeLe~KR~~L 38 (46)
T PF08946_consen 10 LQEHYDNIEQKIEDIDEQIAELEAKRQRL 38 (46)
T ss_dssp -----THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 678888888765 33444444444333
No 17
>PF07763 FEZ: FEZ-like protein; InterPro: IPR011680 This is a family of eukaryotic proteins thought to be involved in axonal outgrowth and fasciculation []. The N-terminal regions of these sequences are less conserved than the C-terminal regions, and are highly acidic []. The Caenorhabditis elegans homolog, UNC-76 (Q7JNU9 from SWISSPROT), may play structural and signalling roles in the control of axonal extension and adhesion (particularly in the presence of adjacent neuronal cells []) and these roles have also been postulated for other FEZ family proteins []. Certain homologs have been definitively found to interact with the N-terminal variable region (V1) of PKC-zeta, and this interaction causes cytoplasmic translocation of the FEZ family protein in mammalian neuronal cells []. The C-terminal region probably participates in the association with the regulatory domain of PKC-zeta []. The members of this family are predicted to form coiled-coil structures [, ], which may interact with members of the RhoA family of signalling proteins [], but are not thought to contain other characteristic protein motifs []. Certain members of this family are expressed almost exclusively in the brain, whereas others (such as FEZ2, Q76LN0 from SWISSPROT) are expressed in other tissues, and are thought to perform similar but unknown functions in these tissues [].
Probab=21.28 E-value=3.7e+02 Score=26.87 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCCCCCCchh-----hcchhHHHHHHhhhhhhh------hh-cccHHHHHhhHHHHHHHHHHHHHHHHHHHh
Q 015177 1 MGSIPDPGELS-----ELNPLSFDEFQRQTSLMT------SC-TLLWKELSDHFTSLEQNLQKKSAALRHKIQ 61 (412)
Q Consensus 1 ~~~~~~~~~~~-----e~l~kaF~eLqs~~s~l~------s~-tl~W~eL~~HF~sLe~sL~~r~~~L~~k~~ 61 (412)
|...|||++-. +.+.....++++.+.... .+ .+...+|-+++..+|..++.-+++|-++..
T Consensus 127 Mq~s~d~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~e~L~~LS~seL~~ll~e~E~~Ir~ySEeLV~qLA 199 (244)
T PF07763_consen 127 MQESPDPEEEETDSSSDSLSSLSQEMQSLKPSSNNSSYEEGLRQLSLSELNELLEEMETAIREYSEELVQQLA 199 (244)
T ss_pred HhcCCCCCCCCCCccchhhhHHHHHHHHhhhcccccCcHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788877653 446777788877632221 12 478899999999999999999999988764
Done!