Query 015177
Match_columns 412
No_of_seqs 133 out of 154
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h22_A Leucine-rich repeat fli 40.4 1E+02 0.0035 25.7 7.5 81 9-89 6-96 (103)
2 3ci9_A Heat shock factor-bindi 31.4 60 0.002 23.4 4.1 32 34-65 14-45 (48)
3 3k1h_A HP1076, putative unchar 27.1 32 0.0011 30.7 2.4 48 125-177 102-153 (158)
4 3nmd_A CGMP dependent protein 26.6 34 0.0012 26.8 2.3 15 12-26 26-40 (72)
5 3fx7_A Putative uncharacterize 24.1 1.2E+02 0.0042 24.7 5.3 58 14-74 11-75 (94)
6 3ljm_A Coil Ser L9C; de novo d 23.2 1E+02 0.0034 19.9 3.5 16 49-64 6-21 (31)
7 3mkq_B Coatomer subunit alpha; 21.5 1.2E+02 0.0041 27.2 5.2 57 266-322 75-131 (177)
8 3igm_B PF14_0633 protein; AP2 18.6 70 0.0024 25.3 2.6 20 221-240 44-63 (77)
9 3mq9_A Bone marrow stromal ant 18.5 2.1E+02 0.0073 28.3 6.9 25 12-39 407-431 (471)
10 2rlw_A PLNF; toxin; NMR {Lacto 18.0 23 0.00079 23.3 -0.2 22 156-177 12-33 (34)
No 1
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=40.41 E-value=1e+02 Score=25.65 Aligned_cols=81 Identities=12% Similarity=0.197 Sum_probs=51.2
Q ss_pred chhhcchhH---HHHHHhhhhhh----hhhcccHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh---hhhHHHHhhhhc
Q 015177 9 ELSELNPLS---FDEFQRQTSLM----TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQ---TKASLDVLKKRE 78 (412)
Q Consensus 9 ~~~e~l~ka---F~eLqs~~s~l----~s~tl~W~eL~~HF~sLe~sL~~r~~~L~~k~~~~e~~---~~~~~~~l~~re 78 (412)
+.-|+.+|| .+.|..-++.| -.+...-.++++.|..+.+.+..+..+++....+.+.- .......|++|+
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556665 35676666665 35677788899999999999988888887666555433 345567888999
Q ss_pred cccccchHHHH
Q 015177 79 VTIDGSVEIAM 89 (412)
Q Consensus 79 ~~i~~~~~~~l 89 (412)
.-|..++..++
T Consensus 86 ~LI~E~~~~~~ 96 (103)
T 4h22_A 86 EMLEPKLAAAL 96 (103)
T ss_dssp SCC--------
T ss_pred HHHHHHHHHHH
Confidence 88887665554
No 2
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=31.44 E-value=60 Score=23.43 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=26.8
Q ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 015177 34 LWKELSDHFTSLEQNLQKKSAALRHKIQTLDT 65 (412)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~~~L~~k~~~~e~ 65 (412)
.-.++++||..+-..|-.|.++...+.-++|.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 45788999999999999999999888877764
No 3
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=27.06 E-value=32 Score=30.72 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=28.9
Q ss_pred HHHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhh----cCCChhhHHHHHhhcccC
Q 015177 125 MSYCLKMEARGFWKFVVTKKKEIEELRNALPAALS----ECVDPAKFVMEAISEVFP 177 (412)
Q Consensus 125 ~~lCe~MD~~gL~~fi~~~~ke~~~lr~Eip~ALr----~ApDPAkLVLdai~~fy~ 177 (412)
..+|++|| ||..||.+.+.|....-.+|..|+- ..|.|.. +++.+|.+
T Consensus 102 l~ll~~~~--~l~aYie~K~~EIk~~Ls~iS~ai~~~~~~tPs~s~---~~~~~f~~ 153 (158)
T 3k1h_A 102 LDLLENVG--EFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN---QSLKDLLS 153 (158)
T ss_dssp GGGGGSHH--HHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHHhhccc--HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcch---hhHHHhhH
Confidence 34668887 9999999999999988899999987 4566666 66666554
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.65 E-value=34 Score=26.79 Aligned_cols=15 Identities=7% Similarity=0.116 Sum_probs=6.4
Q ss_pred hcchhHHHHHHhhhh
Q 015177 12 ELNPLSFDEFQRQTS 26 (412)
Q Consensus 12 e~l~kaF~eLqs~~s 26 (412)
+.|++.-.+|+.+..
T Consensus 26 ~~L~~K~eELr~kd~ 40 (72)
T 3nmd_A 26 YALQEKIEELRQRDA 40 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 5
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.12 E-value=1.2e+02 Score=24.72 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=31.8
Q ss_pred chhHHHHHHhhhhhhhhhcccHHHHHhhHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 015177 14 NPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE-------QNLQKKSAALRHKIQTLDTQTKASLDVL 74 (412)
Q Consensus 14 l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe-------~sL~~r~~~L~~k~~~~e~~~~~~~~~l 74 (412)
++..-.+|+.... ++.-.|..|..||.+|. ....--|++|.+..+.|...+.+-..-|
T Consensus 11 lr~Fa~~L~~F~d---~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L 75 (94)
T 3fx7_A 11 VREFVGHLERFKE---LLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWL 75 (94)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 3444445554433 34566777777777775 2333445566666666665554444333
No 6
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=23.21 E-value=1e+02 Score=19.88 Aligned_cols=16 Identities=56% Similarity=0.775 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhhh
Q 015177 49 LQKKSAALRHKIQTLD 64 (412)
Q Consensus 49 L~~r~~~L~~k~~~~e 64 (412)
|.+++..|++|.++++
T Consensus 6 lekkcaalesklqale 21 (31)
T 3ljm_A 6 LEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455666666666655
No 7
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=21.51 E-value=1.2e+02 Score=27.25 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=39.6
Q ss_pred CHHHHHHHhhccccccchHHHHHHcCCCCChHHHHHHHHhcCcchHHHHHHHHhcCC
Q 015177 266 DVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLV 322 (412)
Q Consensus 266 d~del~~Lv~~va~rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk~ieAV~f~~aF~L~ 322 (412)
|.+.+.++.-....+.+.---+...-+...+.+-|+-|++.|+.-+|+-|+.++|+.
T Consensus 75 ~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~ 131 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE 131 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcH
Confidence 445666554333334444333444445667888999999999999999999999884
No 8
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=18.58 E-value=70 Score=25.31 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 015177 221 KEKAKEIAERWKASLEERGG 240 (412)
Q Consensus 221 ke~Ak~lA~~WK~~l~~~g~ 240 (412)
+|+|+.+|.+|..+|++-|.
T Consensus 44 ~e~Ak~~AIef~k~le~~Gr 63 (77)
T 3igm_B 44 KEKARLAAVEFMKTVENNGR 63 (77)
T ss_dssp HHHHHHHHHHHHHHTCSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 58999999999999987664
No 9
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=18.46 E-value=2.1e+02 Score=28.28 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=12.8
Q ss_pred hcchhHHHHHHhhhhhhhhhcccHHHHH
Q 015177 12 ELNPLSFDEFQRQTSLMTSCTLLWKELS 39 (412)
Q Consensus 12 e~l~kaF~eLqs~~s~l~s~tl~W~eL~ 39 (412)
.++||.|.+++.|-+ +|++.=-.|.
T Consensus 407 ~~~~~~~~~~~~~~~---~~~~~~~~~~ 431 (471)
T 3mq9_A 407 TEAQKGFQDVEAQAA---TANHTVMALM 431 (471)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhh---hcchhHHHHH
Confidence 344566666665544 3555444443
No 10
>2rlw_A PLNF; toxin; NMR {Lactobacillus plantarum}
Probab=18.04 E-value=23 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=18.1
Q ss_pred HHhhcCCChhhHHHHHhhcccC
Q 015177 156 AALSECVDPAKFVMEAISEVFP 177 (412)
Q Consensus 156 ~ALr~ApDPAkLVLdai~~fy~ 177 (412)
...+.|+-||..|+.++.||+.
T Consensus 12 nnyksavgpadwvisavrgfih 33 (34)
T 2rlw_A 12 NNYKSAVGPADWVISAVRGFIH 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccccChHHHHHHHHHhhcc
Confidence 4456778899999999999964
Done!