Query 015177
Match_columns 412
No_of_seqs 133 out of 154
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 08:02:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015177.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015177hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtsa1 a.25.5.1 (A:4-80) Hypo 61.9 4.7 0.00034 29.3 4.4 64 11-77 5-75 (77)
2 d1sxjb1 a.80.1.1 (B:231-322) R 27.1 45 0.0033 24.3 5.1 43 297-339 3-45 (92)
3 d1vz0a1 a.4.14.1 (A:116-208) P 20.3 62 0.0045 24.0 4.7 55 243-308 2-57 (93)
4 d1eo0a_ a.48.3.1 (A:) Transcri 15.0 49 0.0036 24.1 2.8 19 217-235 58-76 (77)
5 d1wjta_ a.48.3.1 (A:) Transcri 12.6 74 0.0054 24.0 3.4 22 217-238 68-89 (103)
6 d2f6qa1 c.14.1.3 (A:108-352) P 12.1 1E+02 0.0074 25.8 4.6 51 298-352 157-207 (245)
7 d2hoea1 a.4.5.63 (A:10-71) N-a 11.7 52 0.0038 22.5 2.0 28 283-310 15-43 (62)
8 d1sfxa_ a.4.5.50 (A:) Hypothet 9.9 1.4E+02 0.01 21.8 4.2 54 252-308 9-63 (109)
9 d1z6ra1 a.4.5.63 (A:12-81) Mlc 9.7 71 0.0052 22.0 2.2 26 283-308 22-48 (70)
10 d1nzya_ c.14.1.3 (A:) 4-Chloro 9.3 1.9E+02 0.014 24.2 5.5 49 299-351 160-208 (269)
No 1
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=61.93 E-value=4.7 Score=29.25 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=37.6
Q ss_pred hhcchhHHHHHHhhhhhhhhhcccHHHHHhhHHHHHH---HHHHHHH----HHHHHHhhhhhhhhhHHHHhhhh
Q 015177 11 SELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQ---NLQKKSA----ALRHKIQTLDTQTKASLDVLKKR 77 (412)
Q Consensus 11 ~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~---sL~~r~~----~L~~k~~~~e~~~~~~~~~l~~r 77 (412)
+|.++-....|++.+.+| +-.-.-|..||+.|+. .-..||. -|++...+|+.-+.+.+.-|++|
T Consensus 5 teevr~fv~hlerfkell---ndevngls~hf~nl~swqd~~rd~fsevldnlk~tfnefdea~qeqiawlker 75 (77)
T d2gtsa1 5 TEEVREFVGHLERFKELL---REEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKER 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhHHHhhcchHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888774 4444567778777653 2233332 34444555555555555555544
No 2
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.05 E-value=45 Score=24.29 Aligned_cols=43 Identities=7% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCcchHHHHHHHHhcCCcCCCChHHHHHHHHHHH
Q 015177 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAK 339 (412)
Q Consensus 297 pdiI~~LI~~Gk~ieAV~f~~aF~L~dkFpPvpLLK~yl~~ak 339 (412)
|..|++++.+|..-+|...+..+=...-|++..+++...+-..
T Consensus 3 P~~I~~il~~~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~ 45 (92)
T d1sxjb1 3 PLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTK 45 (92)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998744557999999998776543
No 3
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=20.27 E-value=62 Score=24.00 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=35.2
Q ss_pred CCCch-hHHHHHHHHHHhcCCCccCHHHHHHHhhccccccchHHHHHHcCCCCChHHHHHHHHhcCc
Q 015177 243 NVKTP-DVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQ 308 (412)
Q Consensus 243 ~~~~l-ea~gFLqlla~fGI~seFd~del~~Lv~~va~rkq~~eL~~sLGL~~KmpdiI~~LI~~Gk 308 (412)
+.+++ +|.||-.|+ -|| ++.+++.+.+. +-+ .-....|.|. +.|+-|+.++..|+
T Consensus 2 DL~piEeA~a~~~L~-e~g----~t~~~iA~~~G---ks~--~~V~~~LrLl-~L~~~v~~~l~~g~ 57 (93)
T d1vz0a1 2 DLSPVEEARGYQALL-EMG----LTQEEVARRVG---KAR--STVANALRLL-QLPPEALEALERGE 57 (93)
T ss_dssp TCCHHHHHHHHHHHH-HTT----CCHHHHHHHHT---CCH--HHHHHHHHGG-GSCHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHH-HcC----CCHHHHHHHHc---cch--HHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 34455 489999998 588 58888887763 211 1223444454 56677777778886
No 4
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.01 E-value=49 Score=24.09 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 015177 217 TPSVKEKAKEIAERWKASL 235 (412)
Q Consensus 217 ~~~vke~Ak~lA~~WK~~l 235 (412)
+++|...|+.|...||..+
T Consensus 58 ~~~v~~lAk~Lv~~WK~~V 76 (77)
T d1eo0a_ 58 NVEISKLVKKMISSWKDAI 76 (77)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999876
No 5
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.63 E-value=74 Score=24.05 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.1
Q ss_pred ChhHHHHHHHHHHHHHHHhhhc
Q 015177 217 TPSVKEKAKEIAERWKASLEER 238 (412)
Q Consensus 217 ~~~vke~Ak~lA~~WK~~l~~~ 238 (412)
.++|+..|+.|-..||..+...
T Consensus 68 ~~~v~~lAk~Lv~~WK~~v~~~ 89 (103)
T d1wjta_ 68 DKEVVSLAKVLIKNWKRLLDSP 89 (103)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999998654
No 6
>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.08 E-value=1e+02 Score=25.82 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=32.2
Q ss_pred HHHHHHHhcCcchHHHHHHHHhcCCcCCCChHHHHHHHHHHHHHHHHHhcCCCch
Q 015177 298 EMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNA 352 (412)
Q Consensus 298 diI~~LI~~Gk~ieAV~f~~aF~L~dkFpPvpLLK~yl~~akk~a~~i~~~~~~~ 352 (412)
....+|+-.|+.+.| .=++.+||+++.-|-. ...+.+++.++++.+.+..+
T Consensus 157 ~~a~~l~l~g~~~~a-~eA~~~Glv~~vv~~~---~l~~~a~~~a~~la~~~~~a 207 (245)
T d2f6qa1 157 AKATEMLIFGKKLTA-GEACAQGLVTEVFPDS---TFQKEVWTRLKAFAKLPPNA 207 (245)
T ss_dssp HHHHHHHTTCCCEEH-HHHHHTTSCSEEECTT---THHHHHHHHHHHHTTSCHHH
T ss_pred chhhhhccccccccc-ccccccccccccCCcc---hHHHHHHHHHHHHHcCCHHH
Confidence 445677888888888 5567789988874432 23445566666665444333
No 7
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=11.69 E-value=52 Score=22.46 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.7
Q ss_pred hHHHHHHcCCC-CChHHHHHHHHhcCcch
Q 015177 283 MPKLAVSLGLG-DKMPEMIEELISRGQQL 310 (412)
Q Consensus 283 ~~eL~~sLGL~-~KmpdiI~~LI~~Gk~i 310 (412)
-++|++.+||. ..+..+|+.|++.|--.
T Consensus 15 r~eLa~~~gls~~TVs~~v~~L~~~GlV~ 43 (62)
T d2hoea1 15 RVELAEELGLTKTTVGEIAKIFLEKGIVV 43 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 47899999999 45999999999988643
No 8
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.95 E-value=1.4e+02 Score=21.82 Aligned_cols=54 Identities=15% Similarity=0.188 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCccCHHHHHHHhhccccccchHHHHHHcCCCC-ChHHHHHHHHhcCc
Q 015177 252 FLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD-KMPEMIEELISRGQ 308 (412)
Q Consensus 252 FLqlla~fGI~seFd~del~~Lv~~va~rkq~~eL~~sLGL~~-KmpdiI~~LI~~Gk 308 (412)
+...|.-|||-. .+-.++..+... ..-.+.+|++.+|+.. .+.++++.|.++|-
T Consensus 9 l~~~L~~lGlt~--~e~~v~~~L~~~-g~~t~~eia~~~~i~~~~v~~~l~~L~~~Gl 63 (109)
T d1sfxa_ 9 LVKALEKLSFKP--SDVRIYSLLLER-GGMRVSEIARELDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HHHHHHHTCCCH--HHHHHHHHHHHH-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHhc-CCCCHHHHHHHhCCCcchHHHHHHHHHhCCC
Confidence 445666777754 111122111111 1123568999999984 59999999999984
No 9
>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.67 E-value=71 Score=22.00 Aligned_cols=26 Identities=12% Similarity=0.181 Sum_probs=22.9
Q ss_pred hHHHHHHcCCCCC-hHHHHHHHHhcCc
Q 015177 283 MPKLAVSLGLGDK-MPEMIEELISRGQ 308 (412)
Q Consensus 283 ~~eL~~sLGL~~K-mpdiI~~LI~~Gk 308 (412)
-++|++.+||..- +..+|+.|++.|-
T Consensus 22 r~eLa~~~gLS~~Tvs~iv~~L~~~gl 48 (70)
T d1z6ra1 22 RIDLSRLAQLAPASITKIVHEMLEAHL 48 (70)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 3789999999955 9999999999985
No 10
>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}
Probab=9.34 E-value=1.9e+02 Score=24.22 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHhcCcchHHHHHHHHhcCCcCCCChHHHHHHHHHHHHHHHHHhcCCCc
Q 015177 299 MIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNN 351 (412)
Q Consensus 299 iI~~LI~~Gk~ieAV~f~~aF~L~dkFpPvpLLK~yl~~akk~a~~i~~~~~~ 351 (412)
....|+-.|+.|.|-. ++.+||+++.-|- ....+.+.+.++++.+.+..
T Consensus 160 ~a~~l~ltg~~i~a~e-A~~~Glv~~vv~~---~~l~~~a~~~a~~la~~~~~ 208 (269)
T d1nzya_ 160 RAMELMLTNRTLYPEE-AKDWGLVSRVYPK---DEFREVAWKVARELAAAPTH 208 (269)
T ss_dssp HHHHHHHHCCCBCHHH-HHHHTSCSCEECH---HHHHHHHHHHHHHHHHSCHH
T ss_pred hhhhccccccccchhH-HHHcCCccccccc---cccccchhhhhhhhhhhhHH
Confidence 3445566677776665 5557777776432 34455555555555544333
Done!