BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015178
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PBY|A Chain A, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|B Chain B, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|C Chain C, Probable Glutaminase From Geobacillus Kaustophilus Hta426
 pdb|2PBY|D Chain D, Probable Glutaminase From Geobacillus Kaustophilus Hta426
          Length = 308

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 5/99 (5%)

Query: 196 LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV--DEEGRLVGDIS-PFSFNSCD 252
           +  V++A  +A +Y + A + IP + +++ N+ S+A+   D+E    GD++   +  S  
Sbjct: 10  VRFVEEAKQYA-RYGKVADY-IPALGKANPNELSIAIYTPDDEVVSAGDVTVKVTLQSIS 67

Query: 253 ETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEK 291
           + +A A+V +  G+   +   G  P D       +LEEK
Sbjct: 68  KIIALALVLIDRGEDEVFHKVGMEPTDYPFHSIAKLEEK 106


>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
           Cerevisiae Ampk Homolog Snf1
 pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
           Cerevisiae Ampk Homolog Snf1
          Length = 315

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 161 HNDSEYCWLTQEDLIRYF-LNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPL 219
           H +     LTQ  ++++  LNC    +     PI  LNI+    + + Q   P    I +
Sbjct: 151 HREIVVSVLTQYRILKFVALNCRE--THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQM 208

Query: 220 IAQSHINQTSVALVDEEGRLVG 241
           + Q  +  +SV ++DE G L+ 
Sbjct: 209 LTQGRV--SSVPIIDENGYLIN 228


>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
           Cerevisiae Ampk In Complex With Adp
 pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
           Cerevisiae Ampk In Complex With Amp
 pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
           Cerevisiae Ampk In Complex With Nadh
          Length = 323

 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 161 HNDSEYCWLTQEDLIRYF-LNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPL 219
           H +     LTQ  ++++  LNC    +     PI  LNI+    + + Q   P    I +
Sbjct: 158 HREIVVSVLTQYRILKFVALNCRE--THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQM 215

Query: 220 IAQSHINQTSVALVDEEGRLVG 241
           + Q  +  +SV ++DE G L+ 
Sbjct: 216 LTQGRV--SSVPIIDENGYLIN 235


>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
          Length = 144

 Score = 28.5 bits (62), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLV 240
           PI  LNI+    + + Q   P    I ++ Q  +  +SV ++DE G L+
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLI 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,742,205
Number of Sequences: 62578
Number of extensions: 400049
Number of successful extensions: 855
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 855
Number of HSP's gapped (non-prelim): 4
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)