BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015178
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84WQ5|CBSX5_ARATH CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana
GN=CBSX5 PE=2 SV=2
Length = 391
Score = 285 bits (729), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 255/414 (61%), Gaps = 43/414 (10%)
Query: 1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
MA+ LLS VSDLC+GKP LR LS SSS+V+DA++ALK ++++SVW+C+H
Sbjct: 1 MALSLLSYNVSDLCLGKPPLRCLSSSSSSVSDAIAALKSSEDTFLSVWNCNHD------- 53
Query: 61 TADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHL 120
DD++ + C C+GK+ M D+I L K+ + + AL VSVLLP+ ++ H+
Sbjct: 54 ----DDNNTE---CECLGKISMADVICHLSKDHD--HSLCALNSSVSVLLPKTRSIVLHV 104
Query: 121 EPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDS------------EYCW 168
+PS SL+EA+DL++ G QNL++P+ KP K HND+ +CW
Sbjct: 105 QPSCSLIEAIDLIIKGAQNLIVPI------HTKPYTKKKQHNDNVSVTTTTHSNGQRFCW 158
Query: 169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQ 227
+TQED+I++ L I SP P ++ L +++ + A+ Y A+ + ++ + Q
Sbjct: 159 ITQEDIIQFLLGFIAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQ 218
Query: 228 TSVALVDEEG-----RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282
TSVA+VD EG L+G+ISP + CDET AAA+ TLSAGDLMAY+D PP+ LV+
Sbjct: 219 TSVAVVDGEGDDPFTSLIGEISPMTLTCCDETAAAAVATLSAGDLMAYIDGANPPESLVQ 278
Query: 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS 342
+V+ RLE+K ++G + L + S+ S SS++E+ + RS SAR+ +S
Sbjct: 279 IVRNRLEDKGLIGLMSLFDSLSSYSTSS---GYSSEEEAPVRTTSYGRSMSSSARMARKS 335
Query: 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396
EAI+C+P SSLMAV++QA+A RV+Y WVVE+D VG+VTF +L+V R L +
Sbjct: 336 EAIVCNPKSSLMAVMIQAVAHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLEN 389
>sp|Q8GZA4|CBSX6_ARATH CBS domain-containing protein CBSX6 OS=Arabidopsis thaliana
GN=CBSX6 PE=1 SV=1
Length = 425
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 110/428 (25%), Positives = 188/428 (43%), Gaps = 64/428 (14%)
Query: 1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKAT 60
MA L V DL +GKP + + TV A+ A+ E I VW RK T
Sbjct: 1 MASVFLYHVVGDLTVGKPEMVEF-YETETVESAIRAIGESTECGIPVW--------RKRT 51
Query: 61 TADIDDHHQDSA--ACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIR 118
T + ++S R +G + +DI++FL K E L E A++ PVS ++ + +++
Sbjct: 52 TPSLPGFVENSEMRQQRFVGILNSLDIVAFLAKTE-CLQEEKAMKIPVSEVVSPDNTLLK 110
Query: 119 HLEPSASLLEAVDLLLGGVQNLVIP--------------LPAGTKLQP------------ 152
++P L++A++++ GV+ L++P L G L+
Sbjct: 111 QVDPGTRLIDALEMMKQGVRRLLVPKSVVWRGMSKRFSILYNGKWLKNSENSSSSSGLSA 170
Query: 153 ----KPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQ 208
+P+ T D ++C L++ED+IR+ + +G L+P P I++L I++ F I+
Sbjct: 171 DSTNRPTTSMTSSRD-KFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNF-IE 228
Query: 209 YDEPAAFAI--PLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGD 266
PA A PL S I +++ +++G+IS CD AA +
Sbjct: 229 ASLPAIEATRRPLCDPSAIAVLEQTENEQQFKIIGEISASKLWKCDYLAAAWALANLYAG 288
Query: 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA 326
V V+ + +S FL+ E +G+ ++ S G
Sbjct: 289 ------------QFVMGVEDNMSSRSFSDFLQTSFPGGE-QNGTATNAKKFSSR-SIGFN 334
Query: 327 QSVRSRGYSARVVH--RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDC--TLVGIVT 382
+ +R R ++ RS + C SSL AV+ Q L+ R ++VWV E D LVG+V
Sbjct: 335 PTSPTRLSIGRSMYRGRSAPLTCKTSSSLAAVMAQMLSHRATHVWVTEADSDDVLVGVVG 394
Query: 383 FTGMLRVI 390
+ +L +
Sbjct: 395 YGEILTAV 402
>sp|Q8GXI9|PV42B_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42b
OS=Arabidopsis thaliana GN=PV42B PE=2 SV=1
Length = 357
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 90/200 (45%), Gaps = 18/200 (9%)
Query: 66 DHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESALQDPVSVLL---PEASGVIRHLEP 122
D SA + IG V M+D+++ + ++ + + PVS ++ PE + L P
Sbjct: 67 DKQSGSARKQYIGMVTMLDVVAHIAGDDGESGLDKKMAAPVSSIIGHCPEGLS-LWSLNP 125
Query: 123 SASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI 182
+ S+++ +++L G+ +++PL + T+ P L + S Y L+Q DLI +F +
Sbjct: 126 NTSIMDCMEMLSKGIHRVLVPLDSNTENITGPEL---VESASAYAMLSQMDLISFFFDQS 182
Query: 183 GLLSPTPNQPINSLNIVDDAGIF---------AIQYDEPAAF-AIPLIAQSHINQTSVAL 232
L + + L+ + + + AIQ A A+P++ S + L
Sbjct: 183 SQLHGILSHTVTDLSAIHNTVLALTSQARVKDAIQCMSIAMLNAVPIVEASGEGEDHKQL 242
Query: 233 VDEEG-RLVGDISPFSFNSC 251
VD + R+VG S C
Sbjct: 243 VDGKNRRVVGTFSASDLKGC 262
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMA 398
E + CH S+L VI +RV VWVV+++ L G+V+ T ++ V+R L S A
Sbjct: 298 ELVTCHVTSTLAQVIHMVTTKRVHRVWVVDQNGGLQGLVSLTDIIAVVRSALLSGA 353
>sp|Q9XI37|PV42A_ARATH SNF1-related protein kinase regulatory subunit gamma-like PV42a
OS=Arabidopsis thaliana GN=PV42A PE=1 SV=1
Length = 352
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 77 IGKVCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRH---------LEPSASLL 127
IG + M+DI++ + E+ S L D + + S +I H L P+ S+L
Sbjct: 84 IGILTMLDILAHIAGED------SNLSDLDRKMSSQVSSIIGHCLEGLSLWTLNPNTSVL 137
Query: 128 EAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL-NCIGLLS 186
E +++ G+ ++P+ + + + + S Y LTQ DL+R+ + L
Sbjct: 138 ECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKMLTQMDLLRFLKDHHFDDLK 197
Query: 187 PTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHIN 226
++ I+ L V+D+ ++AI + AI ++ + +N
Sbjct: 198 TVLSRSISDLGAVNDS-VYAITERTTVSNAINVMKGALLN 236
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394
E + C S++ I + + R V VWV+++ L G+V+ T ++R +R L
Sbjct: 300 EVVSCGVESTMEEAIEKVVTRGVHRVWVMDQQGLLQGVVSLTDIIRSLRSTL 351
>sp|Q5KUG7|MURA2_GEOKA UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 OS=Geobacillus
kaustophilus (strain HTA426) GN=murA2 PE=3 SV=1
Length = 428
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 15/99 (15%)
Query: 96 LNPESALQDPVSVL-LPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKP 154
+ + A+ DP +++ +P +G ++ L S L+ A +LG + V+ LP G L P+P
Sbjct: 66 FDGKEAVIDPTNMVSMPLPNGKVKKLRASYYLMGA---MLGRFKRAVVGLPGGCHLGPRP 122
Query: 155 ---------SLKSTFHNDSEYCWLTQEDL--IRYFLNCI 182
+L +T N+ +L E+L R FL+ +
Sbjct: 123 IDQHIKGFEALGATVTNEQGAIYLRAEELRGARIFLDVV 161
>sp|Q6PDH0|PHLB1_MOUSE Pleckstrin homology-like domain family B member 1 OS=Mus musculus
GN=Phldb1 PE=1 SV=1
Length = 1371
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENP--NFC 406
+ L R +SY +V + + L G++ F + V D LRS AK+ NP FC
Sbjct: 1284 VFDRLKRTLSY-YVDKHETKLKGVIYFQAIEEVYYDHLRSAAKSPNPALTFC 1334
>sp|Q63312|PHLB1_RAT Pleckstrin homology-like domain family B member 1 (Fragment)
OS=Rattus norvegicus GN=Phldb1 PE=2 SV=2
Length = 831
Score = 35.4 bits (80), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENP--NFC 406
+ L R +SY +V + + L G++ F + V D LRS AK+ NP FC
Sbjct: 744 VFDRLKRTLSY-YVDKHETKLKGVIYFQAIEEVYYDHLRSAAKSPNPALTFC 794
>sp|Q8Y4A2|MURA2_LISMO UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=murA2 PE=3 SV=1
Length = 423
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 99 ESALQDPVSVL-LPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKP--- 154
++A+ DP +L +P SG ++ L S L+ A +LG + VI LP G L P+P
Sbjct: 70 KTAIIDPTDMLSMPLPSGNVKKLRASYYLMGA---MLGRFKKAVIGLPGGCYLGPRPIDQ 126
Query: 155 ------SLKSTFHNDSEYCWLTQEDL--IRYFLNCI 182
+L + N+ +L ++L R +L+ +
Sbjct: 127 HIKGFEALGAKVTNEQGAIYLRADELKGARIYLDVV 162
>sp|Q6FMN0|SDS23_CANGA Protein SDS23 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=SDS23 PE=3 SV=1
Length = 548
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 15/89 (16%)
Query: 169 LTQEDLIRYFLN---CIGLLSPTPNQPINSLNI----------VDDAGIFAIQYDEPAAF 215
L+Q LI+Y + G L P N + L I + + +IQ +EP
Sbjct: 268 LSQRRLIKYIWDNARSFGTLEPLLNSSLQDLKIGVLNTNSKPTSRQSRVISIQGEEPLIM 327
Query: 216 AIPLIAQSHINQTSVALVDEEGRLVGDIS 244
A+ + + I +S+A++D +G L+G+IS
Sbjct: 328 ALYKMHKERI--SSIAVIDPQGNLIGNIS 354
>sp|Q45460|OPUBA_BACSU Choline transport ATP-binding protein OpuBA OS=Bacillus subtilis
(strain 168) GN=opuBA PE=3 SV=2
Length = 381
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 353 LMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394
L + + L R V YV VV+ED L+GIVT ++ ++ D L
Sbjct: 329 LRDTVRKILKRGVKYVPVVDEDRRLIGIVTRASLVDIVYDSL 370
>sp|Q09826|SDS23_SCHPO Protein sds23/moc1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=sds23 PE=1 SV=1
Length = 408
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 170 TQEDLIRYFLNCIGL---LSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHIN 226
+Q +IR+ N I L P ++ I+SL+I I I D+ A A+ + Q+ I
Sbjct: 182 SQRSIIRFLWNNIRAFPDLEPLMSRTIHSLDI-GSTDITCISGDQKVAAALRQMNQTGIG 240
Query: 227 QTSVALVDEEGRLVGDIS 244
S+A+VD + RL+G+IS
Sbjct: 241 --SLAVVDAQFRLLGNIS 256
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,785,551
Number of Sequences: 539616
Number of extensions: 5842214
Number of successful extensions: 16170
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 16148
Number of HSP's gapped (non-prelim): 24
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)