Query 015178
Match_columns 412
No_of_seqs 187 out of 1389
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 9.6E-31 2.1E-35 264.6 23.2 290 2-395 60-363 (381)
2 COG3448 CBS-domain-containing 99.8 1.3E-19 2.8E-24 172.5 10.9 229 93-395 124-376 (382)
3 COG2524 Predicted transcriptio 99.7 7.8E-18 1.7E-22 157.8 11.3 128 183-391 164-291 (294)
4 COG2524 Predicted transcriptio 99.7 1.9E-16 4.1E-21 148.6 11.6 120 7-179 171-291 (294)
5 cd04618 CBS_pair_5 The CBS dom 99.6 2.9E-15 6.2E-20 123.3 11.1 93 204-388 3-97 (98)
6 cd04603 CBS_pair_KefB_assoc Th 99.6 9.8E-15 2.1E-19 121.8 12.6 108 204-388 3-110 (111)
7 cd04641 CBS_pair_28 The CBS do 99.6 1.3E-14 2.8E-19 122.5 13.1 117 204-388 3-119 (120)
8 COG3448 CBS-domain-containing 99.6 7.7E-15 1.7E-19 140.1 9.3 132 5-181 242-374 (382)
9 PRK14869 putative manganese-de 99.5 1.8E-14 4E-19 153.2 11.3 287 8-389 68-391 (546)
10 cd04619 CBS_pair_6 The CBS dom 99.5 8.7E-14 1.9E-18 116.4 12.5 111 204-388 3-113 (114)
11 cd04614 CBS_pair_1 The CBS dom 99.5 9.3E-14 2E-18 113.5 11.6 94 204-389 3-96 (96)
12 cd04642 CBS_pair_29 The CBS do 99.5 1.8E-13 3.9E-18 116.6 12.4 123 204-388 3-125 (126)
13 cd04617 CBS_pair_4 The CBS dom 99.5 1.6E-13 3.5E-18 115.5 11.7 110 204-388 3-117 (118)
14 PRK10892 D-arabinose 5-phospha 99.5 1.7E-13 3.6E-18 136.7 12.5 115 198-389 207-323 (326)
15 cd04608 CBS_pair_PALP_assoc Th 99.5 6.3E-14 1.4E-18 119.9 8.1 112 204-390 4-124 (124)
16 cd04630 CBS_pair_17 The CBS do 99.5 3.3E-13 7.2E-18 112.6 12.1 111 204-389 3-114 (114)
17 cd04600 CBS_pair_HPP_assoc Thi 99.5 3.4E-13 7.4E-18 113.8 12.0 123 201-389 2-124 (124)
18 cd04593 CBS_pair_EriC_assoc_ba 99.5 8.6E-13 1.9E-17 110.1 12.0 111 204-389 3-115 (115)
19 PRK11543 gutQ D-arabinose 5-ph 99.4 6.4E-13 1.4E-17 132.0 12.8 121 191-389 197-318 (321)
20 COG2905 Predicted signal-trans 99.4 3.1E-13 6.7E-18 139.0 10.7 117 198-391 154-270 (610)
21 cd04607 CBS_pair_NTP_transfera 99.4 1.2E-12 2.6E-17 108.9 12.4 109 204-388 4-112 (113)
22 cd04627 CBS_pair_14 The CBS do 99.4 1.6E-12 3.4E-17 110.1 13.1 117 204-386 3-120 (123)
23 COG3620 Predicted transcriptio 99.4 5.9E-13 1.3E-17 116.9 10.6 121 8-180 65-185 (187)
24 PRK07807 inosine 5-monophospha 99.4 9.9E-13 2.1E-17 137.2 13.3 113 198-392 94-206 (479)
25 cd04618 CBS_pair_5 The CBS dom 99.4 1.1E-12 2.4E-17 107.8 10.8 96 19-177 2-98 (98)
26 cd04621 CBS_pair_8 The CBS dom 99.4 1.6E-12 3.4E-17 113.0 12.2 132 204-388 3-134 (135)
27 cd04626 CBS_pair_13 The CBS do 99.4 1.7E-12 3.6E-17 107.5 11.7 108 204-388 3-110 (111)
28 cd04605 CBS_pair_MET2_assoc Th 99.4 2.8E-12 6.2E-17 105.8 13.0 106 204-388 4-109 (110)
29 cd04801 CBS_pair_M50_like This 99.4 1E-12 2.2E-17 109.5 10.3 108 204-388 3-113 (114)
30 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 2.9E-12 6.2E-17 105.1 12.7 103 204-388 3-105 (106)
31 cd04596 CBS_pair_DRTGG_assoc T 99.4 2E-12 4.4E-17 106.8 11.8 104 204-388 4-107 (108)
32 cd04643 CBS_pair_30 The CBS do 99.4 2E-12 4.4E-17 107.6 11.4 114 204-389 3-116 (116)
33 cd04640 CBS_pair_27 The CBS do 99.4 1.4E-12 3.1E-17 111.1 10.7 116 204-388 3-125 (126)
34 cd04623 CBS_pair_10 The CBS do 99.4 3.4E-12 7.5E-17 105.3 12.5 110 204-388 3-112 (113)
35 cd04586 CBS_pair_BON_assoc Thi 99.4 1.5E-12 3.2E-17 112.2 10.6 132 204-389 4-135 (135)
36 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 3.9E-12 8.4E-17 104.5 12.5 105 204-388 4-108 (109)
37 cd04631 CBS_pair_18 The CBS do 99.4 2.1E-12 4.6E-17 109.0 11.1 122 204-389 3-125 (125)
38 cd04803 CBS_pair_15 The CBS do 99.4 3.2E-12 7E-17 107.4 11.9 119 204-388 3-121 (122)
39 cd04615 CBS_pair_2 The CBS dom 99.4 3.7E-12 7.9E-17 105.7 12.0 110 204-388 3-112 (113)
40 cd04624 CBS_pair_11 The CBS do 99.4 5.1E-12 1.1E-16 104.6 12.8 109 204-388 3-111 (112)
41 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 3.2E-12 7E-17 105.8 11.3 110 204-388 4-113 (114)
42 cd04635 CBS_pair_22 The CBS do 99.4 2.6E-12 5.7E-17 108.0 10.9 120 204-389 3-122 (122)
43 cd04590 CBS_pair_CorC_HlyC_ass 99.4 6.5E-12 1.4E-16 103.8 13.0 107 204-388 3-110 (111)
44 cd04629 CBS_pair_16 The CBS do 99.4 2.7E-12 5.8E-17 106.5 10.5 112 204-389 3-114 (114)
45 cd04620 CBS_pair_7 The CBS dom 99.4 4.4E-12 9.5E-17 105.7 11.7 110 204-389 3-115 (115)
46 cd04639 CBS_pair_26 The CBS do 99.4 4E-12 8.6E-17 105.1 11.3 108 204-388 3-110 (111)
47 cd04632 CBS_pair_19 The CBS do 99.4 3.4E-12 7.4E-17 108.7 11.1 123 204-388 3-127 (128)
48 COG0517 FOG: CBS domain [Gener 99.4 6.2E-12 1.3E-16 104.6 12.3 111 199-387 5-117 (117)
49 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 4.9E-12 1.1E-16 104.6 11.3 110 204-388 3-113 (114)
50 cd04627 CBS_pair_14 The CBS do 99.4 4E-12 8.7E-17 107.6 11.0 116 116-249 2-121 (123)
51 cd04641 CBS_pair_28 The CBS do 99.4 5.2E-12 1.1E-16 106.4 11.6 115 19-177 2-120 (120)
52 COG3620 Predicted transcriptio 99.4 5.4E-12 1.2E-16 111.0 11.6 135 171-391 50-184 (187)
53 cd04585 CBS_pair_ACT_assoc2 Th 99.4 7.6E-12 1.6E-16 104.5 11.8 119 204-388 3-121 (122)
54 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1E-11 2.2E-16 102.3 12.4 108 204-388 3-110 (111)
55 cd04587 CBS_pair_CAP-ED_DUF294 99.4 6.7E-12 1.5E-16 103.9 11.1 110 204-388 3-112 (113)
56 PRK07107 inosine 5-monophospha 99.3 4.2E-12 9.1E-17 133.3 11.7 108 204-390 107-219 (502)
57 cd04601 CBS_pair_IMPDH This cd 99.3 7.7E-12 1.7E-16 102.9 10.9 105 204-388 4-109 (110)
58 cd04606 CBS_pair_Mg_transporte 99.3 6.3E-12 1.4E-16 104.0 10.4 103 206-389 1-108 (109)
59 cd04588 CBS_pair_CAP-ED_DUF294 99.3 1.8E-11 4E-16 100.9 13.2 107 204-388 3-109 (110)
60 cd04800 CBS_pair_CAP-ED_DUF294 99.3 1.3E-11 2.9E-16 101.9 12.1 108 204-388 3-110 (111)
61 cd04636 CBS_pair_23 The CBS do 99.3 1.2E-11 2.7E-16 106.1 12.1 129 204-388 3-131 (132)
62 cd04595 CBS_pair_DHH_polyA_Pol 99.3 1.5E-11 3.2E-16 101.7 12.1 106 204-388 4-109 (110)
63 cd04612 CBS_pair_SpoIVFB_EriC_ 99.3 1.3E-11 2.9E-16 101.6 11.7 108 204-388 3-110 (111)
64 cd04610 CBS_pair_ParBc_assoc T 99.3 1.4E-11 3E-16 101.0 11.7 103 204-388 4-106 (107)
65 PRK14869 putative manganese-de 99.3 2.6E-11 5.7E-16 129.1 16.8 190 103-391 67-304 (546)
66 cd04602 CBS_pair_IMPDH_2 This 99.3 1.2E-11 2.6E-16 103.3 11.2 105 204-388 4-113 (114)
67 PLN02274 inosine-5'-monophosph 99.3 9.9E-12 2.1E-16 130.6 13.1 113 199-392 106-223 (505)
68 PRK01862 putative voltage-gate 99.3 9.1E-12 2E-16 133.4 12.8 124 191-392 447-572 (574)
69 PRK10892 D-arabinose 5-phospha 99.3 1.2E-11 2.6E-16 123.3 12.9 123 6-177 200-323 (326)
70 TIGR00400 mgtE Mg2+ transporte 99.3 1.9E-11 4.2E-16 127.2 14.7 121 189-393 129-254 (449)
71 cd04622 CBS_pair_9 The CBS dom 99.3 1.9E-11 4.1E-16 101.2 11.9 110 204-388 3-112 (113)
72 cd04625 CBS_pair_12 The CBS do 99.3 1.9E-11 4E-16 101.2 11.8 110 204-389 3-112 (112)
73 cd04599 CBS_pair_GGDEF_assoc2 99.3 2.3E-11 5E-16 99.3 11.6 102 204-388 3-104 (105)
74 cd04589 CBS_pair_CAP-ED_DUF294 99.3 3.1E-11 6.6E-16 99.9 12.4 108 204-388 3-110 (111)
75 cd04637 CBS_pair_24 The CBS do 99.3 3E-11 6.6E-16 101.6 12.6 119 204-388 3-121 (122)
76 cd04594 CBS_pair_EriC_assoc_ar 99.3 2.1E-11 4.6E-16 100.2 11.3 100 205-388 4-103 (104)
77 cd04603 CBS_pair_KefB_assoc Th 99.3 2.3E-11 4.9E-16 101.4 11.5 109 19-177 2-111 (111)
78 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.5E-11 3.3E-16 128.3 12.8 113 198-393 93-205 (475)
79 cd04608 CBS_pair_PALP_assoc Th 99.3 2.2E-11 4.7E-16 104.1 11.1 113 18-178 2-124 (124)
80 PRK05567 inosine 5'-monophosph 99.3 2.5E-11 5.3E-16 127.6 13.9 113 198-391 92-205 (486)
81 cd04633 CBS_pair_20 The CBS do 99.3 2.1E-11 4.7E-16 102.3 10.7 118 204-388 3-120 (121)
82 TIGR03520 GldE gliding motilit 99.3 8.4E-11 1.8E-15 121.0 17.0 160 4-220 187-348 (408)
83 TIGR01302 IMP_dehydrog inosine 99.3 2E-11 4.3E-16 127.1 12.6 112 198-390 85-200 (450)
84 cd04802 CBS_pair_3 The CBS dom 99.3 4.4E-11 9.6E-16 98.9 12.3 109 204-388 3-111 (112)
85 TIGR03520 GldE gliding motilit 99.3 4.5E-11 9.7E-16 123.0 14.6 125 190-397 190-317 (408)
86 PRK15094 magnesium/cobalt effl 99.3 4.4E-11 9.6E-16 117.8 13.8 127 190-397 66-195 (292)
87 cd04619 CBS_pair_6 The CBS dom 99.3 5.9E-11 1.3E-15 99.2 12.5 111 19-176 2-113 (114)
88 cd04617 CBS_pair_4 The CBS dom 99.3 4.9E-11 1.1E-15 100.3 11.4 115 19-176 2-117 (118)
89 PTZ00314 inosine-5'-monophosph 99.3 4.3E-11 9.4E-16 125.7 13.6 113 198-391 101-218 (495)
90 cd04609 CBS_pair_PALP_assoc2 T 99.3 4.8E-11 1E-15 98.0 10.9 107 204-388 3-109 (110)
91 cd02205 CBS_pair The CBS domai 99.3 8.2E-11 1.8E-15 95.7 12.2 110 204-388 3-112 (113)
92 cd04630 CBS_pair_17 The CBS do 99.3 9.9E-11 2.1E-15 97.6 12.6 111 19-176 2-113 (114)
93 PRK15094 magnesium/cobalt effl 99.2 2E-10 4.4E-15 113.1 16.5 162 5-220 64-227 (292)
94 PRK11543 gutQ D-arabinose 5-ph 99.2 5.5E-11 1.2E-15 118.2 12.6 121 7-176 196-317 (321)
95 cd04634 CBS_pair_21 The CBS do 99.2 8.9E-11 1.9E-15 102.6 12.1 140 204-388 3-142 (143)
96 PRK07807 inosine 5-monophospha 99.2 1.1E-10 2.5E-15 121.8 14.6 122 3-180 84-206 (479)
97 KOG1764 5'-AMP-activated prote 99.2 2E-10 4.3E-15 116.9 15.7 195 18-271 162-358 (381)
98 cd04632 CBS_pair_19 The CBS do 99.2 1.2E-10 2.6E-15 99.0 12.0 119 19-177 2-128 (128)
99 cd04584 CBS_pair_ACT_assoc Thi 99.2 8.2E-11 1.8E-15 98.5 10.7 119 204-389 3-121 (121)
100 COG2905 Predicted signal-trans 99.2 3.8E-11 8.3E-16 123.8 9.8 123 8-181 149-272 (610)
101 cd04591 CBS_pair_EriC_assoc_eu 99.2 9.6E-11 2.1E-15 97.1 10.5 99 204-389 4-105 (105)
102 cd04623 CBS_pair_10 The CBS do 99.2 2E-10 4.4E-15 94.6 12.1 111 19-177 2-113 (113)
103 cd04600 CBS_pair_HPP_assoc Thi 99.2 2E-10 4.4E-15 96.7 12.3 117 18-176 2-123 (124)
104 cd04643 CBS_pair_30 The CBS do 99.2 1.5E-10 3.3E-15 96.2 11.1 115 19-177 2-116 (116)
105 PRK01862 putative voltage-gate 99.2 1.1E-10 2.5E-15 125.0 13.1 130 3-180 442-572 (574)
106 cd04642 CBS_pair_29 The CBS do 99.2 9.8E-11 2.1E-15 99.6 10.0 112 117-248 3-123 (126)
107 cd04593 CBS_pair_EriC_assoc_ba 99.2 2.9E-10 6.2E-15 94.8 12.3 112 19-176 2-114 (115)
108 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.7E-10 3.7E-15 96.5 10.4 112 204-388 3-118 (119)
109 PF00571 CBS: CBS domain CBS d 99.2 6.1E-11 1.3E-15 87.3 6.7 55 337-391 2-56 (57)
110 cd04589 CBS_pair_CAP-ED_DUF294 99.2 3.8E-10 8.1E-15 93.3 12.2 109 19-177 2-111 (111)
111 COG4109 Predicted transcriptio 99.2 1.3E-10 2.8E-15 113.8 10.7 111 204-395 200-310 (432)
112 TIGR00393 kpsF KpsF/GutQ famil 99.2 1.2E-10 2.7E-15 112.5 10.7 109 198-382 160-268 (268)
113 cd04607 CBS_pair_NTP_transfera 99.2 4.4E-10 9.4E-15 93.4 12.5 108 20-176 4-112 (113)
114 cd04636 CBS_pair_23 The CBS do 99.2 2.4E-10 5.3E-15 97.9 10.9 116 19-177 2-132 (132)
115 cd04631 CBS_pair_18 The CBS do 99.2 3.6E-10 7.8E-15 95.3 11.7 118 19-177 2-125 (125)
116 TIGR00400 mgtE Mg2+ transporte 99.2 6.6E-11 1.4E-15 123.2 8.6 177 103-397 130-312 (449)
117 cd04614 CBS_pair_1 The CBS dom 99.2 3E-10 6.6E-15 92.6 10.5 93 19-176 2-95 (96)
118 cd04638 CBS_pair_25 The CBS do 99.2 5E-10 1.1E-14 91.9 11.9 103 204-388 3-105 (106)
119 cd04801 CBS_pair_M50_like This 99.2 4.7E-10 1E-14 93.3 11.7 108 117-250 3-113 (114)
120 cd04639 CBS_pair_26 The CBS do 99.1 4.3E-10 9.3E-15 92.8 11.2 109 19-177 2-111 (111)
121 COG0517 FOG: CBS domain [Gener 99.1 4.2E-10 9.2E-15 93.5 10.9 105 117-248 9-116 (117)
122 cd04621 CBS_pair_8 The CBS dom 99.1 5.8E-10 1.3E-14 96.8 12.1 115 19-176 2-134 (135)
123 cd04613 CBS_pair_SpoIVFB_EriC_ 99.1 4.4E-10 9.6E-15 92.8 10.8 112 18-176 1-113 (114)
124 cd04588 CBS_pair_CAP-ED_DUF294 99.1 1.1E-09 2.4E-14 90.2 13.0 108 18-176 1-109 (110)
125 TIGR01303 IMP_DH_rel_1 IMP deh 99.1 1.1E-09 2.5E-14 114.3 16.1 121 3-180 83-204 (475)
126 TIGR01137 cysta_beta cystathio 99.1 3.9E-10 8.4E-15 117.4 12.5 114 198-390 340-453 (454)
127 cd04625 CBS_pair_12 The CBS do 99.1 9.7E-10 2.1E-14 90.8 12.1 110 19-177 2-112 (112)
128 cd04629 CBS_pair_16 The CBS do 99.1 4.5E-10 9.8E-15 93.0 10.0 112 19-177 2-114 (114)
129 cd04803 CBS_pair_15 The CBS do 99.1 7.3E-10 1.6E-14 93.0 11.2 111 116-247 2-118 (122)
130 PRK05567 inosine 5'-monophosph 99.1 1.3E-09 2.9E-14 114.5 15.8 167 10-243 89-257 (486)
131 cd04800 CBS_pair_CAP-ED_DUF294 99.1 1.3E-09 2.9E-14 89.9 12.5 109 18-176 1-110 (111)
132 cd04626 CBS_pair_13 The CBS do 99.1 8.8E-10 1.9E-14 91.1 11.4 108 19-176 2-110 (111)
133 cd04583 CBS_pair_ABC_OpuCA_ass 99.1 1.3E-09 2.8E-14 89.4 12.3 105 19-176 3-108 (109)
134 cd04586 CBS_pair_BON_assoc Thi 99.1 5.8E-10 1.2E-14 96.0 10.5 116 18-176 2-134 (135)
135 cd04624 CBS_pair_11 The CBS do 99.1 1.5E-09 3.2E-14 89.7 12.6 109 19-176 2-111 (112)
136 cd04605 CBS_pair_MET2_assoc Th 99.1 1.7E-09 3.8E-14 89.0 12.9 107 18-176 2-109 (110)
137 cd04620 CBS_pair_7 The CBS dom 99.1 1.3E-09 2.8E-14 90.6 12.2 109 19-176 2-114 (115)
138 cd04590 CBS_pair_CorC_HlyC_ass 99.1 1.8E-09 3.8E-14 89.1 12.6 108 19-176 2-110 (111)
139 cd04609 CBS_pair_PALP_assoc2 T 99.1 1.5E-09 3.2E-14 89.0 11.5 109 19-177 2-110 (110)
140 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.7E-09 3.8E-14 90.1 12.1 116 19-177 2-122 (122)
141 cd04615 CBS_pair_2 The CBS dom 99.1 2.2E-09 4.7E-14 88.9 12.4 109 20-176 3-112 (113)
142 cd04595 CBS_pair_DHH_polyA_Pol 99.1 2.3E-09 4.9E-14 88.4 12.2 107 18-176 2-109 (110)
143 cd04592 CBS_pair_EriC_assoc_eu 99.1 9.9E-10 2.2E-14 95.6 10.4 117 204-375 3-119 (133)
144 cd04637 CBS_pair_24 The CBS do 99.1 1.7E-09 3.7E-14 90.9 11.4 116 19-177 2-122 (122)
145 cd04604 CBS_pair_KpsF_GutQ_ass 99.1 1.7E-09 3.7E-14 89.4 11.1 111 19-177 3-114 (114)
146 cd04633 CBS_pair_20 The CBS do 99.1 1.5E-09 3.3E-14 90.9 10.9 115 19-177 2-121 (121)
147 cd04587 CBS_pair_CAP-ED_DUF294 99.1 3.1E-09 6.7E-14 87.8 12.5 110 19-176 2-112 (113)
148 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 3.7E-09 8.1E-14 86.9 12.8 108 19-176 2-110 (111)
149 TIGR01137 cysta_beta cystathio 99.1 1.4E-09 3E-14 113.2 12.7 124 3-178 330-453 (454)
150 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 2.9E-09 6.2E-14 87.6 12.1 110 18-177 1-111 (111)
151 cd04622 CBS_pair_9 The CBS dom 99.0 4E-09 8.7E-14 87.1 12.8 110 18-176 1-112 (113)
152 cd04582 CBS_pair_ABC_OpuCA_ass 99.0 2.5E-09 5.4E-14 87.5 11.3 99 117-247 3-102 (106)
153 cd04802 CBS_pair_3 The CBS dom 99.0 4.4E-09 9.4E-14 86.9 12.5 110 18-176 1-111 (112)
154 cd04640 CBS_pair_27 The CBS do 99.0 1.3E-09 2.8E-14 92.8 9.3 114 19-176 2-125 (126)
155 PRK07107 inosine 5-monophospha 99.0 1.9E-09 4.1E-14 113.3 12.4 123 9-178 95-219 (502)
156 cd04635 CBS_pair_22 The CBS do 99.0 3.3E-09 7.2E-14 89.0 11.5 116 19-176 2-121 (122)
157 cd04596 CBS_pair_DRTGG_assoc T 99.0 3.4E-09 7.4E-14 87.3 11.2 104 19-176 3-107 (108)
158 cd04602 CBS_pair_IMPDH_2 This 99.0 4.4E-09 9.4E-14 87.7 11.8 108 19-176 3-113 (114)
159 cd04599 CBS_pair_GGDEF_assoc2 99.0 3.9E-09 8.5E-14 86.0 11.1 101 19-175 2-103 (105)
160 cd04601 CBS_pair_IMPDH This cd 99.0 3.2E-09 6.9E-14 87.2 10.0 106 18-176 2-109 (110)
161 PLN02274 inosine-5'-monophosph 99.0 1.3E-08 2.9E-13 107.2 17.1 114 18-179 108-222 (505)
162 cd02205 CBS_pair The CBS domai 99.0 1.1E-08 2.3E-13 83.1 12.4 111 19-177 2-113 (113)
163 cd04592 CBS_pair_EriC_assoc_eu 99.0 6.5E-09 1.4E-13 90.5 11.7 108 19-149 2-121 (133)
164 TIGR00393 kpsF KpsF/GutQ famil 99.0 4.9E-09 1.1E-13 101.4 11.3 103 8-145 155-259 (268)
165 cd04610 CBS_pair_ParBc_assoc T 98.9 9.7E-09 2.1E-13 84.0 11.3 105 18-177 2-107 (107)
166 COG2239 MgtE Mg/Co/Ni transpor 98.9 7.3E-09 1.6E-13 107.1 12.0 132 198-409 137-277 (451)
167 TIGR01302 IMP_dehydrog inosine 98.9 7.9E-09 1.7E-13 107.7 12.4 118 10-178 82-200 (450)
168 cd04584 CBS_pair_ACT_assoc Thi 98.9 1.5E-08 3.3E-13 84.6 11.5 115 19-176 2-120 (121)
169 cd04594 CBS_pair_EriC_assoc_ar 98.9 1.5E-08 3.2E-13 83.2 11.0 99 21-176 4-103 (104)
170 PRK11573 hypothetical protein; 98.9 4E-08 8.8E-13 101.3 16.7 165 4-220 183-349 (413)
171 cd04606 CBS_pair_Mg_transporte 98.9 1E-08 2.2E-13 84.6 9.9 101 23-177 2-108 (109)
172 cd04634 CBS_pair_21 The CBS do 98.9 2.2E-08 4.8E-13 87.4 12.0 114 19-176 2-142 (143)
173 PTZ00314 inosine-5'-monophosph 98.9 1.5E-08 3.3E-13 106.5 11.7 119 10-178 98-217 (495)
174 cd04591 CBS_pair_EriC_assoc_eu 98.8 2.6E-08 5.6E-13 82.4 10.6 100 116-249 3-103 (105)
175 PF00571 CBS: CBS domain CBS d 98.8 2.1E-08 4.6E-13 73.6 6.9 56 10-90 1-56 (57)
176 cd04598 CBS_pair_GGDEF_assoc T 98.7 9.8E-08 2.1E-12 79.6 11.0 112 19-176 2-118 (119)
177 PRK11573 hypothetical protein; 98.7 2.5E-07 5.5E-12 95.4 16.2 130 190-397 186-317 (413)
178 cd04638 CBS_pair_25 The CBS do 98.7 1.5E-07 3.2E-12 77.1 10.9 103 19-176 2-105 (106)
179 COG4109 Predicted transcriptio 98.6 1.4E-07 3E-12 92.9 10.2 119 8-180 188-307 (432)
180 TIGR01186 proV glycine betaine 98.6 5.1E-07 1.1E-11 91.7 13.9 109 204-393 252-360 (363)
181 COG1253 TlyC Hemolysins and re 98.6 1.2E-06 2.6E-11 90.9 16.1 163 4-220 202-366 (429)
182 PRK10070 glycine betaine trans 98.5 1.1E-06 2.5E-11 90.2 12.3 105 207-392 290-394 (400)
183 COG1253 TlyC Hemolysins and re 98.4 4.1E-06 8.8E-11 87.0 13.8 127 190-396 205-333 (429)
184 KOG2550 IMP dehydrogenase/GMP 98.3 1.1E-06 2.3E-11 88.2 6.5 106 204-389 118-226 (503)
185 smart00116 CBS Domain in cysta 98.2 3.7E-06 7.9E-11 57.6 6.2 47 344-390 2-48 (49)
186 COG4536 CorB Putative Mg2+ and 98.2 1.3E-05 2.8E-10 80.0 12.1 165 5-220 197-361 (423)
187 cd04597 CBS_pair_DRTGG_assoc2 98.2 2.4E-06 5.2E-11 71.8 6.0 53 336-388 60-112 (113)
188 COG2239 MgtE Mg/Co/Ni transpor 98.2 4E-06 8.6E-11 87.0 7.6 113 104-250 132-250 (451)
189 KOG2550 IMP dehydrogenase/GMP 97.9 1.8E-05 4E-10 79.5 6.7 163 36-250 54-225 (503)
190 COG4535 CorC Putative Mg2+ and 97.8 7.6E-05 1.7E-09 70.3 8.4 125 192-395 68-193 (293)
191 TIGR01186 proV glycine betaine 97.7 0.00049 1.1E-08 70.0 12.9 107 20-180 252-359 (363)
192 PRK10070 glycine betaine trans 97.7 0.0005 1.1E-08 70.9 12.4 106 22-180 289-394 (400)
193 cd04597 CBS_pair_DRTGG_assoc2 97.6 0.00011 2.3E-09 61.7 5.8 55 8-87 58-112 (113)
194 COG4536 CorB Putative Mg2+ and 97.6 0.00079 1.7E-08 67.5 12.2 136 190-403 199-336 (423)
195 KOG0474 Cl- channel CLC-7 and 97.6 0.00013 2.7E-09 77.0 6.9 150 197-390 586-746 (762)
196 COG4535 CorC Putative Mg2+ and 97.6 0.00018 3.9E-09 67.9 7.1 156 7-216 66-223 (293)
197 KOG0474 Cl- channel CLC-7 and 97.3 0.00045 9.8E-09 73.0 6.7 139 4-178 578-746 (762)
198 smart00116 CBS Domain in cysta 97.3 0.0008 1.7E-08 45.6 5.8 47 20-89 2-48 (49)
199 KOG0475 Cl- channel CLC-3 and 96.9 0.0089 1.9E-07 63.5 11.4 133 204-390 558-694 (696)
200 KOG0475 Cl- channel CLC-3 and 96.5 0.02 4.3E-07 61.0 10.7 126 13-178 551-694 (696)
201 COG4175 ProV ABC-type proline/ 95.3 0.091 2E-06 52.3 8.8 51 341-392 334-384 (386)
202 TIGR03415 ABC_choXWV_ATP choli 94.8 0.046 1E-06 56.1 5.7 50 341-392 332-381 (382)
203 COG4175 ProV ABC-type proline/ 91.1 1.3 2.8E-05 44.3 9.0 156 17-244 215-374 (386)
204 COG1125 OpuBA ABC-type proline 89.6 0.54 1.2E-05 45.7 4.9 38 352-389 271-308 (309)
205 KOG0476 Cl- channel CLC-2 and 80.2 2.3 5E-05 46.8 4.7 57 336-392 590-648 (931)
206 TIGR03415 ABC_choXWV_ATP choli 77.7 2.9 6.3E-05 42.9 4.4 37 204-244 335-371 (382)
207 COG1125 OpuBA ABC-type proline 65.5 11 0.00024 36.9 5.0 40 27-88 269-308 (309)
208 KOG2118 Predicted membrane pro 61.6 9.8 0.00021 40.5 4.3 111 4-145 200-311 (498)
209 KOG0476 Cl- channel CLC-2 and 59.1 16 0.00034 40.6 5.2 49 343-392 811-859 (931)
210 PF05198 IF3_N: Translation in 42.4 51 0.0011 25.9 4.5 31 365-395 12-42 (76)
211 PF13365 Trypsin_2: Trypsin-li 31.6 28 0.00062 28.1 1.6 19 222-242 102-120 (120)
212 PF13673 Acetyltransf_10: Acet 30.9 76 0.0016 25.4 4.1 31 354-384 32-62 (117)
213 PF14827 Cache_3: Sensory doma 24.0 61 0.0013 26.9 2.3 17 228-244 92-108 (116)
214 PF14827 Cache_3: Sensory doma 23.7 78 0.0017 26.3 2.9 17 367-383 93-109 (116)
215 PRK00028 infC translation init 23.4 78 0.0017 29.0 3.0 30 365-394 19-48 (177)
216 PF13508 Acetyltransf_7: Acety 22.3 78 0.0017 23.8 2.5 19 365-383 2-20 (79)
217 TIGR02038 protease_degS peripl 21.0 1.2E+02 0.0025 30.7 4.0 37 363-399 197-251 (351)
218 PRK10898 serine endoprotease; 20.8 1.1E+02 0.0023 31.1 3.7 38 362-399 196-252 (353)
219 PHA00673 acetyltransferase dom 20.3 1.6E+02 0.0035 26.4 4.3 34 351-384 40-73 (154)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.97 E-value=9.6e-31 Score=264.62 Aligned_cols=290 Identities=23% Similarity=0.341 Sum_probs=225.7
Q ss_pred cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
+.|+..+++.+++....+++.++. ..++.+|+++|..++..++||||.+ .++++|+++
T Consensus 60 ~~~~~~~~~~~~~p~~~~l~~~d~-~~~v~~a~~~l~~~~~~~~p~~~~~---------------------~~~~~g~~~ 117 (381)
T KOG1764|consen 60 SKFMKSHTCYDLLPTSSKLVVFDT-KLSVKKAFNALVQNGVRAAPLWDSK---------------------KQQFVGMLT 117 (381)
T ss_pred HHHHhccCcccccCCcceeEEeeC-CCcHHHHHHHHHhhceeeeccccCc---------------------cceeEEEEE
Confidence 357889999999988889999999 9999999999999999999999975 368999999
Q ss_pred hHHHHHHhhhcccC-CCccc---------ccCCchhhhccCC-CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCC
Q 015178 82 MVDIISFLCKEENL-LNPES---------ALQDPVSVLLPEA-SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTK 149 (412)
Q Consensus 82 ~~Dil~~l~~~~~l-~~~~~---------~l~~~V~dvm~~~-~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~ 149 (412)
+.|++.++...... .+... ....++..+.... ..++..+.|..++.+++..+. +++||+||.+.
T Consensus 118 ~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~---- 193 (381)
T KOG1764|consen 118 ITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDP---- 193 (381)
T ss_pred HHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCCCceeecCcHHHHHHHHHHHhCCccceeeecc----
Confidence 99999988752110 00000 1123444444433 344599999999999999888 99999999863
Q ss_pred CCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcC--CCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCC
Q 015178 150 LQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLL--SPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQ 227 (412)
Q Consensus 150 ~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l--~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~ 227 (412)
+.+.+.+++||..|++|++.+...+ ..++.+++.+|++++.+++..+..++|+.+|+++|.+.++
T Consensus 194 -----------~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~i-- 260 (381)
T KOG1764|consen 194 -----------ETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRI-- 260 (381)
T ss_pred -----------cccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCc--
Confidence 2246788999999999999976554 4677899999999986669999999999999999999999
Q ss_pred ceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhccc
Q 015178 228 TSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEIS 307 (412)
Q Consensus 228 s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 307 (412)
+++||||..|+.+|+||..|+.+.- ... ....+... .+...+. .
T Consensus 261 s~lpvV~~~g~~v~~~s~~Dv~~l~-----------~~~---------~~~~~~~~--------~l~~~~~---~----- 304 (381)
T KOG1764|consen 261 SALPVVDENGKKVGNYSRFDVIHLA-----------REG---------TYNNLDLS--------CLSEALS---H----- 304 (381)
T ss_pred CcceEEcCCCceecceehhhhhhhh-----------hcC---------ccCccchh--------HHHHHhh---h-----
Confidence 9999999999999997766666521 110 00000000 0010000 0
Q ss_pred CCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178 308 SGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML 387 (412)
Q Consensus 308 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL 387 (412)
......+++||++.+||.+++++|+++++||+||||++|+++||||++||+
T Consensus 305 -----------------------------~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil 355 (381)
T KOG1764|consen 305 -----------------------------RPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDIL 355 (381)
T ss_pred -----------------------------cccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHH
Confidence 011234599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 015178 388 RVIRDRLR 395 (412)
Q Consensus 388 ~~l~~~~~ 395 (412)
.++.....
T Consensus 356 ~~l~~~p~ 363 (381)
T KOG1764|consen 356 SYLVLTPS 363 (381)
T ss_pred HHHHhCcc
Confidence 99987644
No 2
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-19 Score=172.51 Aligned_cols=229 Identities=17% Similarity=0.261 Sum_probs=164.3
Q ss_pred ccCCCcccccCCchhhhcc-----CC-CC-ceEecCCCCcHHHHHHHHhcCCceeeecCCCCCC----C---CCCC----
Q 015178 93 ENLLNPESALQDPVSVLLP-----EA-SG-VIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTK----L---QPKP---- 154 (412)
Q Consensus 93 ~~l~~~~~~l~~~V~dvm~-----~~-~~-~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~----~---~~~~---- 154 (412)
++++++..+.. ..-+|+ .. ++ ++++|-.++-++-.+.+++|+.-|..+|..-... + ++.|
T Consensus 124 rcLHPPsgAvA--LtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rv 201 (382)
T COG3448 124 RCLHPPSGAVA--LTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRV 201 (382)
T ss_pred cCCCCCchHHH--HHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhcc
Confidence 55655554433 444454 12 33 5889999999999999999888888888631111 0 1111
Q ss_pred CCC-----cccCCCCeeeeecHHHHHHHHHHc-cCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCc
Q 015178 155 SLK-----STFHNDSEYCWLTQEDLIRYFLNC-IGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQT 228 (412)
Q Consensus 155 ~~~-----~~~~~~~~v~iITq~DIv~~l~~~-~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s 228 (412)
+++ +.......+-.|+..|+-+.|.+. ..++.. ...++.+-+||+++ |+++++++++.+|.++|.+|++ +
T Consensus 202 gfs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R-~~~~LtcadIMSrd-Vvtv~~~ts~dhA~~ll~~H~i--k 277 (382)
T COG3448 202 GFSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRR-RMGELTCADIMSRD-VVTVSTDTSIDHARKLLQEHRI--K 277 (382)
T ss_pred CCCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHH-HhccccHHHhcCcc-ceecCCcCChHHHHHHHHHcCc--c
Confidence 121 233334455589999999988763 111110 02234444689999 9999999999999999999999 9
Q ss_pred eeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccC
Q 015178 229 SVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISS 308 (412)
Q Consensus 229 ~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 308 (412)
++||+|++.+++|+ ++.+||.+.... .. +++| ..+.
T Consensus 278 aLPV~d~~~rl~Gi-------------------Vt~~dl~~~a~~-----~p----~qrl---------r~~~------- 313 (382)
T COG3448 278 ALPVLDEHRRLVGI-------------------VTQRDLLKHARP-----SP----FQRL---------RFLR------- 313 (382)
T ss_pred cccccccccceeee-------------------eeHHHHhhccCc-----ch----HHHh---------hccC-------
Confidence 99999999999999 667777764321 01 1122 0011
Q ss_pred CCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 309 GSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 309 ~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
...++.+|+.++.|+.|+++..+.+..+.+.+.|++||+|++|+++||||++|+|.
T Consensus 314 ------------------------~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDlia 369 (382)
T COG3448 314 ------------------------PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIA 369 (382)
T ss_pred ------------------------CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHH
Confidence 11246789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 015178 389 VIRDRLR 395 (412)
Q Consensus 389 ~l~~~~~ 395 (412)
++++...
T Consensus 370 al~r~~~ 376 (382)
T COG3448 370 ALYRNWS 376 (382)
T ss_pred HHHHHHH
Confidence 9998654
No 3
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.74 E-value=7.8e-18 Score=157.83 Aligned_cols=128 Identities=19% Similarity=0.292 Sum_probs=109.1
Q ss_pred CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhc
Q 015178 183 GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTL 262 (412)
Q Consensus 183 ~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~l 262 (412)
..+..++..++.+ +|+++ ++++.+++|+.+|.++|.++++ ++.||+|++ +++|+ +
T Consensus 164 ~~m~siPk~~V~~--~~s~~-~i~v~~d~tl~eaak~f~~~~i--~GaPVvd~d-k~vGi-------------------i 218 (294)
T COG2524 164 SKMVSIPKEKVKN--LMSKK-LITVRPDDTLREAAKLFYEKGI--RGAPVVDDD-KIVGI-------------------I 218 (294)
T ss_pred eeeeecCcchhhh--hccCC-ceEecCCccHHHHHHHHHHcCc--cCCceecCC-ceEEE-------------------E
Confidence 3456677888886 69999 9999999999999999999999 999999976 99999 6
Q ss_pred CHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC
Q 015178 263 SAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS 342 (412)
Q Consensus 263 s~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~ 342 (412)
|.+|+...+..+. + ...+.++|++
T Consensus 219 t~~dI~~aia~g~------------~--------------------------------------------~~kV~~~M~k 242 (294)
T COG2524 219 TLSDIAKAIANGN------------L--------------------------------------------DAKVSDYMRK 242 (294)
T ss_pred EHHHHHHHHHcCC------------c--------------------------------------------cccHHHHhcc
Confidence 6777765432110 0 0124578999
Q ss_pred CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+++|++.|..+.+|+++|..+++.||-|+|++|+++||||++|||+.++
T Consensus 243 ~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 243 NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999876
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.68 E-value=1.9e-16 Score=148.58 Aligned_cols=120 Identities=16% Similarity=0.210 Sum_probs=108.1
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
..+|.++| +++++++.+ ++|+.+|.+.+++++|.++||+|. ++++||+|..||.
T Consensus 171 k~~V~~~~--s~~~i~v~~-d~tl~eaak~f~~~~i~GaPVvd~-----------------------dk~vGiit~~dI~ 224 (294)
T COG2524 171 KEKVKNLM--SKKLITVRP-DDTLREAAKLFYEKGIRGAPVVDD-----------------------DKIVGIITLSDIA 224 (294)
T ss_pred cchhhhhc--cCCceEecC-CccHHHHHHHHHHcCccCCceecC-----------------------CceEEEEEHHHHH
Confidence 45688898 588999999 999999999999999999999994 5899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
..+++. .++.+|+++|.++ +++++.++.+++|+++|. +|++|+.|.+. +++.
T Consensus 225 ~aia~g--------~~~~kV~~~M~k~---vitI~eDe~i~dAir~M~~~nVGRLlV~ds----------------~gkp 277 (294)
T COG2524 225 KAIANG--------NLDAKVSDYMRKN---VITINEDEDIYDAIRLMNKNNVGRLLVTDS----------------NGKP 277 (294)
T ss_pred HHHHcC--------CccccHHHHhccC---CceEcCchhHHHHHHHHHhcCcceEEEEcc----------------CCcE
Confidence 998863 2457899999977 999999999999999999 99999999863 3788
Q ss_pred eeeecHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFL 179 (412)
Q Consensus 166 v~iITq~DIv~~l~ 179 (412)
+||||.+||++.|+
T Consensus 278 vGiITrTDIL~~ia 291 (294)
T COG2524 278 VGIITRTDILTRIA 291 (294)
T ss_pred EEEEehHHHHHHhh
Confidence 99999999999875
No 5
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.63 E-value=2.9e-15 Score=123.25 Aligned_cols=93 Identities=23% Similarity=0.296 Sum_probs=82.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
++++.+++++.+|++.|.++++ +++||+|++ |+++|+ +|..|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~~Gi-------------------vt~~Dl~~~------------ 49 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGI--RSAPLWDSRKQQFVGM-------------------LTITDFILI------------ 49 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCCEEEEE-------------------EEHHHHhhh------------
Confidence 8899999999999999999999 999999975 899999 556665431
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
+. +++++|++++.+++++|.+
T Consensus 50 ---------------------------------------------------------~~--~~~v~~~~~l~~a~~~m~~ 70 (98)
T cd04618 50 ---------------------------------------------------------LR--LVSIHPERSLFDAALLLLK 70 (98)
T ss_pred ---------------------------------------------------------ee--eEEeCCCCcHHHHHHHHHH
Confidence 01 6789999999999999999
Q ss_pred cCCcEEEEEeCC-CcEEEEEehHHHHH
Q 015178 363 RRVSYVWVVEED-CTLVGIVTFTGMLR 388 (412)
Q Consensus 363 ~~ihrl~VVD~~-~~lvGIVT~~DIL~ 388 (412)
++++++||+|++ |+++|+||++||++
T Consensus 71 ~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 71 NKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred CCCCEeeEEECCCCCceEEeehhhhhc
Confidence 999999999987 89999999999986
No 6
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.61 E-value=9.8e-15 Score=121.77 Aligned_cols=108 Identities=21% Similarity=0.249 Sum_probs=89.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++.....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~---------- 51 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGA--RAVVVVDEENKVLGQ-------------------VTLSDLLEIGPN---------- 51 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHhhccc----------
Confidence 7889999999999999999988 999999999999999 566776542100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+ .. ..++.++|..++.++.+++++.+++++|.++
T Consensus 52 --------------~-~~-------------------------------~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~ 85 (111)
T cd04603 52 --------------D-YE-------------------------------TLKVCEVYIVPVPIVYCDSKVTDLLRIFRET 85 (111)
T ss_pred --------------c-cc-------------------------------ccChhheeecCCcEECCCCcHHHHHHHHHHc
Confidence 0 00 0013356778889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||||++|+++|+||.+|+++
T Consensus 86 ~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 86 EPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred CCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 9999999999899999999999985
No 7
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=1.3e-14 Score=122.47 Aligned_cols=117 Identities=21% Similarity=0.319 Sum_probs=90.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+|++.+...+. ....
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~--~~~pVv~~~~~~~Gi-------------------v~~~dl~~~~~~~~-~~~~--- 57 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRV--SALPIVDENGKVVDV-------------------YSRFDVINLAKEGA-YNNL--- 57 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCC--CeeeEECCCCeEEEE-------------------EeHHHHHHHHhcCc-cccc---
Confidence 7899999999999999999999 999999999999999 66777765321100 0000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. ..+... + ....+|..++.++.+++++.+++++|.++
T Consensus 58 ----~--~~~~~~---~----------------------------------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~ 94 (120)
T cd04641 58 ----D--LTVGEA---L----------------------------------ERRSQDFEGVRTCSPDDCLRTIFDLIVKA 94 (120)
T ss_pred ----c--CCHHHH---H----------------------------------hhcccCCCCCeEEcCCCcHHHHHHHHHhc
Confidence 0 000000 0 01234567889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+++++||||++|+++|+||+.|+++
T Consensus 95 ~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 95 RVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred CccEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999998899999999999986
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.57 E-value=7.7e-15 Score=140.10 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=109.9
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
+...+|+||| ++++++++. ++++.+|.++|.+|+|+.+||.|+ +.+++|||+.+|
T Consensus 242 ~~~LtcadIM--SrdVvtv~~-~ts~dhA~~ll~~H~ikaLPV~d~----------------------~~rl~GiVt~~d 296 (382)
T COG3448 242 MGELTCADIM--SRDVVTVST-DTSIDHARKLLQEHRIKALPVLDE----------------------HRRLVGIVTQRD 296 (382)
T ss_pred hccccHHHhc--CccceecCC-cCChHHHHHHHHHcCccccccccc----------------------ccceeeeeeHHH
Confidence 4567899999 689999999 999999999999999999999996 468999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
++.+..- ...+.....-...|+.+|+ .++.++.++++..+++-.|. .|.|.+||++. .|
T Consensus 297 l~~~a~~-~p~qrlr~~~~~~vk~imt---~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~----------------~g 356 (382)
T COG3448 297 LLKHARP-SPFQRLRFLRPPTVKGIMT---TPVVTVRPDTPAVELVPRLADEGLHALPVLDA----------------AG 356 (382)
T ss_pred HhhccCc-chHHHhhccCCCccccccc---CcceeecCCCcHHHHHHHhhcCCcceeeEEcC----------------CC
Confidence 9886432 1111112222456999998 44899999999999999999 89999999864 47
Q ss_pred CeeeeecHHHHHHHHHHc
Q 015178 164 SEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~~ 181 (412)
+++|||||+|++..++++
T Consensus 357 ~lvGIvsQtDliaal~r~ 374 (382)
T COG3448 357 KLVGIVSQTDLIAALYRN 374 (382)
T ss_pred cEEEEeeHHHHHHHHHHH
Confidence 899999999999988874
No 9
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.55 E-value=1.8e-14 Score=153.21 Aligned_cols=287 Identities=17% Similarity=0.139 Sum_probs=175.6
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.+|+|+|. ++++++++ ++++.+|++.|.++++..+||+|. +++++|+|+..||..
T Consensus 68 ~~V~dim~--~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~----------------------~g~l~Givt~~di~~ 122 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSP-DTSLKEAWNLMDENNVKTLPVVDE----------------------EGKLLGLVSLSDLAR 122 (546)
T ss_pred CcHHHhcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHHHH
Confidence 68999994 68999999 999999999999999999999995 368999999999999
Q ss_pred HhhhcccCCCcccccCCchhh--------------------------------hccCC-CCceEecCCCCcHHHHHHHHh
Q 015178 88 FLCKEENLLNPESALQDPVSV--------------------------------LLPEA-SGVIRHLEPSASLLEAVDLLL 134 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~d--------------------------------vm~~~-~~~~~tV~~~~sL~~ai~lm~ 134 (412)
++.+.... +.-+....++.+ ++..- ++.++.+.....+.. ..+.
T Consensus 123 ~~~~~~~~-~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~--~ai~ 199 (546)
T PRK14869 123 AYMDILDP-EILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQL--AAIE 199 (546)
T ss_pred HHHhhcch-hhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHH--HHHH
Confidence 76642110 000001111111 11111 233454433333222 2233
Q ss_pred cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCC-CCcEEEEeCCCcH
Q 015178 135 GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVD-DAGIFAIQYDEPA 213 (412)
Q Consensus 135 ~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~ 213 (412)
.|+..++|........ ..-....+..+..|.|+.|..+.... +. ...++++ +|+ ++ ++++++++++
T Consensus 200 ~~~~~lIlt~g~~~~~----~v~~la~~~~i~ii~t~~dt~~t~~~----l~--~~~~V~~--iM~~~~-~~~~~~~~~~ 266 (546)
T PRK14869 200 AGVRLLIITGGAPVSE----DVLELAKENGVTVISTPYDTFTTARL----IN--QSIPVSY--IMTTED-LVTFSKDDYL 266 (546)
T ss_pred cCCCEEEECCCCCCCH----HHHHHHHhCCCeEEEecccHHHHHHH----hh--cCCCHHH--hccCCC-cEEECCCCcH
Confidence 7888887764322110 00011123456679999999987654 11 1345665 688 77 9999999999
Q ss_pred HHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhh
Q 015178 214 AFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSM 293 (412)
Q Consensus 214 ~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~ 293 (412)
.+|.+.|.++++ +.+||||++|+++|+||..||.....+ .+. .++..... + ..
T Consensus 267 ~~~~~~m~~~~~--~~~PVvd~~g~lvGiit~~dl~~~~~~-----------~~i-LVD~~e~~----q---------~~ 319 (546)
T PRK14869 267 EDVKEVMLKSRY--RSYPVVDEDGKVVGVISRYHLLSPVRK-----------KVI-LVDHNEKS----Q---------AV 319 (546)
T ss_pred HHHHHHHHhcCC--CceEEEcCCCCEEEEEEHHHhhccccC-----------ceE-EEcCcccc----c---------cc
Confidence 999999999999 999999999999999665555442110 000 01100000 0 00
Q ss_pred hHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe---CCCCcHHHHHHHHHHcCCcEEEE
Q 015178 294 VGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC---HPWSSLMAVIMQALARRVSYVWV 370 (412)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~---~~~~sl~~v~~~m~~~~ihrl~V 370 (412)
..+ .. .+.-.. -..+ ..+++++..++++ ...++..-+++.|.++++...|+
T Consensus 320 ~~~----~~----------------~~i~~i--iDHH----~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ 373 (546)
T PRK14869 320 EGI----EE----------------AEILEI--IDHH----RLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPE 373 (546)
T ss_pred cch----hh----------------ceEEEE--ecCC----ccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHH
Confidence 000 00 000000 0000 1234566665544 33556667888889999998888
Q ss_pred EeCCCcEEEEEehHHHHHH
Q 015178 371 VEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 371 VD~~~~lvGIVT~~DIL~~ 389 (412)
+.. ..+.||+|.|+.++.
T Consensus 374 ia~-~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 374 IAG-LLLAAILSDTLLFKS 391 (546)
T ss_pred HHH-HHHHHHHHHhcCccC
Confidence 865 479999999998754
No 10
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=8.7e-14 Score=116.42 Aligned_cols=111 Identities=20% Similarity=0.265 Sum_probs=90.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
|.++.+++++.+|++.|.+++. ..+||+|++|+++|+ ++..|++.....
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~g~~~G~-------------------vt~~dl~~~~~~---------- 51 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGI--DLVVVCDPHGKLAGV-------------------LTKTDVVRQMGR---------- 51 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEE-------------------EehHHHHHHHhh----------
Confidence 7889999999999999999998 999999999999999 556666542200
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
... . . ...++.++|..+++++++++++.++++.|.++
T Consensus 52 ----------------~~~--------~----~---------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~ 88 (114)
T cd04619 52 ----------------CGG--------P----G---------------CTAPVENVMTRAVVSCRPGDLLHDVWQVMKQR 88 (114)
T ss_pred ----------------cCC--------C----c---------------ccCCHHHHhcCCCeeECCCCCHHHHHHHHHHc
Confidence 000 0 0 00113456778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||++|+++
T Consensus 89 ~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 89 GLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred CCCeEEEECCCCcEEEEEEhHhhcc
Confidence 9999999998899999999999975
No 11
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=9.3e-14 Score=113.52 Aligned_cols=94 Identities=16% Similarity=0.371 Sum_probs=83.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++.+|++..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~------------- 48 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANV--KALPVLDDDGKLSGI-------------------ITERDLIAK------------- 48 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHhcC-------------
Confidence 7889999999999999999999 999999999999999 556665430
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
..+.++.+++++.+++++|.++
T Consensus 49 ----------------------------------------------------------~~~~~v~~~~~l~~a~~~m~~~ 70 (96)
T cd04614 49 ----------------------------------------------------------SEVVTATKRTTVSECAQKMKRN 70 (96)
T ss_pred ----------------------------------------------------------CCcEEecCCCCHHHHHHHHHHh
Confidence 0167899999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+++++||+|++|+++|+||++||+++
T Consensus 71 ~~~~lpVv~~~~~~~Giit~~di~~~ 96 (96)
T cd04614 71 RIEQIPIINGNDKLIGLLRDHDLLKP 96 (96)
T ss_pred CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence 99999999988899999999999864
No 12
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.51 E-value=1.8e-13 Score=116.56 Aligned_cols=123 Identities=30% Similarity=0.509 Sum_probs=89.8
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +++||+|++|+++|+ ++..|++.....+..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~--~~i~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~~~------- 54 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNI--SGLPVVDEKGKLIGN-------------------ISASDLKGLLLSPDD------- 54 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCC--CcccEECCCCcEEEE-------------------EEHHHhhhhhcCcch-------
Confidence 7889999999999999999998 999999999999999 556666553211000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ........+ +. .+ . ..+...|..+++++.+++++.+++++|.++
T Consensus 55 ---~~-~~~~~~~~~-~~-----------------~~-------~-----~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~ 100 (126)
T cd04642 55 ---LL-LYRTITFKE-LS-----------------EK-------F-----TDSDGVKSRPLITCTPSSTLKEVITKLVAN 100 (126)
T ss_pred ---hh-cccchhhhh-hh-----------------hh-------c-----ccccccccCCCeEECCCCcHHHHHHHHHHh
Confidence 00 000000000 00 00 0 001234667899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+++++||||++|+++|+||.+||++
T Consensus 101 ~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 101 KVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred CCcEEEEECCCCCEEEEEEHHHHhc
Confidence 9999999998899999999999985
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.51 E-value=1.6e-13 Score=115.46 Aligned_cols=110 Identities=22% Similarity=0.273 Sum_probs=88.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++..|++.......
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------vt~~dl~~~~~~~~-------- 53 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDV--GSLFVVDEDGDLVGV-------------------VSRKDLLKASIGGA-------- 53 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHHcCC--------
Confidence 7889999999999999999999 999999998999999 56667655210000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHHHHHHHH
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMAVIMQAL 361 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~~m~ 361 (412)
+ . ....+.++|.+ ++.++++++++.+++++|.
T Consensus 54 --------------~-~-------------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~ 87 (118)
T cd04617 54 --------------D-L-------------------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLI 87 (118)
T ss_pred --------------C-c-------------------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHH
Confidence 0 0 00012345653 6889999999999999999
Q ss_pred HcCCcEEEEEeCC---CcEEEEEehHHHHH
Q 015178 362 ARRVSYVWVVEED---CTLVGIVTFTGMLR 388 (412)
Q Consensus 362 ~~~ihrl~VVD~~---~~lvGIVT~~DIL~ 388 (412)
+++++++||||++ |+++|+||++||++
T Consensus 88 ~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 88 EHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred HcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 9999999999987 69999999999875
No 14
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.49 E-value=1.7e-13 Score=136.67 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=94.7
Q ss_pred CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
+|++ + ++++++++++.+|++.|.++++ +.+||+|++|+++|+ +|.+|+++....+
T Consensus 207 im~~~~~-~~~v~~~~sl~~a~~~~~~~~~--~~~vVvd~~g~lvGi-------------------vt~~Dl~~~~~~~- 263 (326)
T PRK10892 207 IMHTGDE-IPHVSKTASLRDALLEITRKNL--GMTVICDDNMKIEGI-------------------FTDGDLRRVFDMG- 263 (326)
T ss_pred HhCCCCC-CeEECCCCCHHHHHHHHHhcCC--CeEEEEcCCCcEEEE-------------------EecHHHHHHHhcC-
Confidence 6876 6 9999999999999999999988 999999999999999 5667765422100
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA 355 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~ 355 (412)
.+ ....++.++|+++++++.+++++.+
T Consensus 264 -----------------------------------~~------------------~~~~~v~~im~~~~~~v~~~~~l~~ 290 (326)
T PRK10892 264 -----------------------------------ID------------------LRQASIADVMTPGGIRVRPGILAVD 290 (326)
T ss_pred -----------------------------------CC------------------cccCCHHHhcCCCCEEECCCCCHHH
Confidence 00 0001245788999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
++++|.+++++++||+|+ |+++||||++||+++
T Consensus 291 a~~~m~~~~~~~lpVv~~-~~lvGiit~~dil~~ 323 (326)
T PRK10892 291 ALNLMQSRHITSVLVADG-DHLLGVLHMHDLLRA 323 (326)
T ss_pred HHHHHHHCCCcEEEEeeC-CEEEEEEEhHHhHhc
Confidence 999999999999999985 799999999999975
No 15
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.49 E-value=6.3e-14 Score=119.88 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=90.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++..|++....
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------i~~~dl~~~~~----------- 51 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGF--DQLPVVDESGKILGM-------------------VTLGNLLSSLS----------- 51 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEE-------------------EEHHHHHHHHH-----------
Confidence 7889999999999999999998 999999998999999 56677664210
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH---
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA--- 360 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m--- 360 (412)
... . ..+.++.++|++++++|++++++.+++++|
T Consensus 52 -----------------~~~-------~-------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~ 88 (124)
T cd04608 52 -----------------SGK-------V-------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETD 88 (124)
T ss_pred -----------------Hhc-------c-------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccC
Confidence 000 0 001135678999999999999999999965
Q ss_pred ------HHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 361 ------LARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 361 ------~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
.+++.+++||+|++|+++||||++||++++
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 89 AFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence 344789999999889999999999999864
No 16
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.49 E-value=3.3e-13 Score=112.59 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=90.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++.+++++.+|++.|.++++ +.+||+|++ |+++|+ ++.+|+++.+...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~G~-------------------v~~~dl~~~~~~~-------- 53 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGV--SSLVVEKRRESDAYGI-------------------VTMRDILKKVVAE-------- 53 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCC--CEEEEEECCCCcEEEE-------------------EehHHHHHHHHhC--------
Confidence 7889999999999999999988 999999987 899999 6777776532000
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
. . . ....++.++|..++.++++++++.+++++|.+
T Consensus 54 --------------------~-------~-----~-------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~ 88 (114)
T cd04630 54 --------------------G-------R-----D-------------PDRVNVYEIMTKPLISVSPDMDIKYCARLMER 88 (114)
T ss_pred --------------------C-------C-----C-------------CCccCHHHHhcCCCeeECCCCCHHHHHHHHHH
Confidence 0 0 0 00011345677789999999999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
++.+++||+|+ |+++|+||+.||+++
T Consensus 89 ~~~~~~~Vvd~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 89 TNIRRAPVVEN-NELIGIISLTDIFLA 114 (114)
T ss_pred cCCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence 99999999998 899999999999864
No 17
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.49 E-value=3.4e-13 Score=113.77 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=92.8
Q ss_pred CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
++ +.++.++.++.++++.|.+++. +.+||+|++|+++|+ ++.+|++.+......
T Consensus 2 ~~-~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Gi-------------------v~~~~l~~~~~~~~~---- 55 (124)
T cd04600 2 RD-VVTVTPDTSLEEAWALLRRHRI--KALPVVDGDRRLVGI-------------------VTQRDLLRHARPDGR---- 55 (124)
T ss_pred CC-cEEeCCCCCHHHHHHHHHHcCC--ceeeEECCCCCEEEE-------------------EEHHHHHhhhccccc----
Confidence 34 8889999999999999999988 999999988999999 556666543211000
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m 360 (412)
......+.. . .....+.++|..+++++.+++++.+++++|
T Consensus 56 -------------~~~~~~~~~-------------~--------------~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 95 (124)
T cd04600 56 -------------RPLRGRLRG-------------R--------------DKPETVGDIMSPPVVTVRPDTPIAELVPLL 95 (124)
T ss_pred -------------chhhhhhhc-------------c--------------cccccHHHhccCCCeeeCCCCcHHHHHHHH
Confidence 000000000 0 001123457788999999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
.+++.+++||+|++|+++|+||..|++++
T Consensus 96 ~~~~~~~~~Vv~~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 96 ADGGHHHVPVVDEDRRLVGIVTQTDLIAA 124 (124)
T ss_pred HhcCCCceeEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999988999999999999864
No 18
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.45 E-value=8.6e-13 Score=110.12 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=89.8
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++......
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~~--------- 52 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKH--GSALVVDRDGGVVGI-------------------ITLPDLLRALEAD--------- 52 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCC--cEEEEEcCCCCEEEE-------------------EEHHHHHHHHhcc---------
Confidence 6788999999999999999988 999999999999999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. .. ...+.++|..++++|.+++++.+++++|.++
T Consensus 53 -------------------~~-----------~~---------------~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~ 87 (115)
T cd04593 53 -------------------EA-----------GE---------------PSAVDEVATPPLLTVHPDEPLAHALDRMASR 87 (115)
T ss_pred -------------------cc-----------cc---------------cccHHHhccCCceEECCCCCHHHHHHHHHHc
Confidence 00 00 0012345677899999999999999999999
Q ss_pred CCcEEEEEeCC--CcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEED--CTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~--~~lvGIVT~~DIL~~ 389 (412)
+.+++||+|++ |+++|+||++||+++
T Consensus 88 ~~~~~~Vvd~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 88 GLRQLPVVDRGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred CCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence 99999999987 799999999999864
No 19
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=6.4e-13 Score=132.03 Aligned_cols=121 Identities=14% Similarity=0.214 Sum_probs=98.1
Q ss_pred CCcccccCCCCC-cEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178 191 QPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA 269 (412)
Q Consensus 191 ~~i~~L~i~~~~-~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~ 269 (412)
.+|++ +|.++ ++.++++++++.+|++.|.+++. +.+||+|++|+++|+ ++..|+++
T Consensus 197 ~~V~~--im~~~~~~~~v~~~~sv~~a~~~~~~~~~--~~~~Vvd~~g~~iG~-------------------vt~~dl~~ 253 (321)
T PRK11543 197 NKVHH--LMRRDDAIPQVALTASVMDAMLELSRTGL--GLVAVCDAQQQVQGV-------------------FTDGDLRR 253 (321)
T ss_pred hHHHH--HhccCCCCcEeCCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------ecHHHHHH
Confidence 34444 56654 38899999999999999999988 999999999999999 66777765
Q ss_pred hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178 270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP 349 (412)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~ 349 (412)
.+..+. . ....+.++|+++++++.+
T Consensus 254 ~~~~~~-----------------------------------------~--------------~~~~v~~im~~~~~~v~~ 278 (321)
T PRK11543 254 WLVGGG-----------------------------------------A--------------LTTPVNEAMTRGGTTLQA 278 (321)
T ss_pred HHhCCC-----------------------------------------C--------------cCCcHHHhcCCCCEEECC
Confidence 321000 0 001245678889999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
++++.+++++|.++++.++||||++|+++|+||+.||+++
T Consensus 279 ~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 279 QSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 9999999999999999999999988999999999999875
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.45 E-value=3.1e-13 Score=139.02 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=99.6
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
.++.+ .+++++.+++.+|.+.|.++|+ +++.++|++|++.|| +|.+|+++.+
T Consensus 154 ~~~~~-~~~v~~~~~i~~aa~km~~~gv--~s~v~l~~~~~~~GI-------------------vT~~dl~~~v------ 205 (610)
T COG2905 154 VKTLP-AVTVSPQASIQDAARKMKDEGV--SSLVVLDDSGPLLGI-------------------VTRKDLRSRV------ 205 (610)
T ss_pred HhcCC-CcccCccCcHHHHHHHHHhcCC--CeEEEEcCCCCccce-------------------eehHHHHHHH------
Confidence 46677 9999999999999999999999 999999999999999 6677776643
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
+..+ ++...+|.++|+.|++++.+++-+-+|+
T Consensus 206 ----------------------~~~g--------------------------~~~~~~V~evmT~p~~svd~~~~~feAm 237 (610)
T COG2905 206 ----------------------IADG--------------------------RSKTQKVSEVMTSPVISVDRGDFLFEAM 237 (610)
T ss_pred ----------------------HhcC--------------------------CCcccchhhhhccCceeecCcchHHHHH
Confidence 1100 0011236789999999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
-.|.+++||||||+++ |+++||||.+|||+.+.
T Consensus 238 l~m~r~~I~hl~V~e~-gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 238 LMMLRNRIKHLPVTED-GQPLGILTLTDILRLFS 270 (610)
T ss_pred HHHHHhCCceeeeecC-CeeeEEeeHHHHHHhhC
Confidence 9999999999999986 89999999999999886
No 21
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=1.2e-12 Score=108.92 Aligned_cols=109 Identities=22% Similarity=0.273 Sum_probs=88.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
.+++.+++++.+|++.|.+++. +.++|+|++|+++|+ ++.+|++.....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~---------- 52 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNAL--RIVLVVDENGRLLGT-------------------VTDGDIRRALLK---------- 52 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCc--CEEEEECCCCCEEEE-------------------EEcHHHHHHHhc----------
Confidence 6778999999999999999988 999999999999999 566666542100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. .. ...+.++|..++.++.+++++.+++++|.++
T Consensus 53 ------------------~~------------~~---------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04607 53 ------------------GL------------SL---------------DDPVSEVMNRNPITAKVGSSREEILALMRER 87 (113)
T ss_pred ------------------CC------------Cc---------------CCCHHHhhcCCCEEEcCCCCHHHHHHHHHHC
Confidence 00 00 0012346777889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||||++|+++|+||.+||+.
T Consensus 88 ~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 88 SIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred CCCEEEEECCCCCEEEEEEhHHhcc
Confidence 9999999998899999999999974
No 22
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.6e-12 Score=110.12 Aligned_cols=117 Identities=19% Similarity=0.215 Sum_probs=87.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++.+++++.+|++.|.++++ +.+||+|++ |+++|+ ++..|++++...+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~~Gi-------------------v~~~dl~~~~~~~-------- 53 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGI--HRVAVTEEESGEVIGI-------------------LSQRRLVEFLWEN-------- 53 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCc--ceEEEEeCCCCcEEEE-------------------EEHHHHHHHHHHh--------
Confidence 7889999999999999999988 999999997 999999 5566665532100
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
.......... ... ......+|..++.++++++++.+++++|.+
T Consensus 54 ----~~~~~~~~~~----~~~-----------------------------~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~ 96 (123)
T cd04627 54 ----ARSFPGLDPL----YPI-----------------------------PLRDLTIGTSDVISINGDQPLIDALHLMHN 96 (123)
T ss_pred ----HHhccchhhh----hhh-----------------------------hhhhcccCcCCceEeCCCCCHHHHHHHHHH
Confidence 0000000000 000 000123467889999999999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEEehHHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTGM 386 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~DI 386 (412)
++++++||+|++|+++|+||.+||
T Consensus 97 ~~~~~lpVvd~~~~~vGiit~~di 120 (123)
T cd04627 97 EGISSVAVVDNQGNLIGNISVTDV 120 (123)
T ss_pred cCCceEEEECCCCcEEEEEeHHHh
Confidence 999999999998999999999997
No 23
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.44 E-value=5.9e-13 Score=116.93 Aligned_cols=121 Identities=17% Similarity=0.251 Sum_probs=98.5
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.++..|| ..++|++.+ ++++.+|+++|.++||+-+||.+. +++||-||+.||++
T Consensus 65 ita~~iM--~spvv~v~p-dDsi~~vv~lM~~~g~SQlPVi~~-----------------------~k~VGsItE~~iv~ 118 (187)
T COG3620 65 ITAKTIM--HSPVVSVSP-DDSISDVVNLMRDKGISQLPVIEE-----------------------DKVVGSITENDIVR 118 (187)
T ss_pred EeHhhhc--cCCeeEECc-hhhHHHHHHHHHHcCCccCceeeC-----------------------CeeeeeecHHHHHH
Confidence 4678888 478999999 999999999999999999999994 68999999999999
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC 167 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (412)
.+.+.. +..-...|+++|+.. |.+|+++++|.. +..+..+..-++|+ ++|+.+|
T Consensus 119 ~~le~~-----e~i~~~~vr~vM~e~---fP~Vs~~~~l~v-I~~LL~~~~AVlV~-----------------e~G~~vG 172 (187)
T COG3620 119 ALLEGM-----ESIRSLRVREVMGEP---FPTVSPDESLNV-ISQLLEEHPAVLVV-----------------ENGKVVG 172 (187)
T ss_pred HHhccc-----cchhhhhHHHHhcCC---CCcCCCCCCHHH-HHHHHhhCCeEEEE-----------------eCCceEE
Confidence 988742 122346699999855 999999999854 44444444556665 3478999
Q ss_pred eecHHHHHHHHHH
Q 015178 168 WLTQEDLIRYFLN 180 (412)
Q Consensus 168 iITq~DIv~~l~~ 180 (412)
|||+.||++++.+
T Consensus 173 IITk~DI~k~~~~ 185 (187)
T COG3620 173 IITKADIMKLLAG 185 (187)
T ss_pred EEeHHHHHHHHhc
Confidence 9999999999864
No 24
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.43 E-value=9.9e-13 Score=137.22 Aligned_cols=113 Identities=28% Similarity=0.288 Sum_probs=96.8
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++ ++++.+++++.+|+++|.++++ +++||+|++|+++|+ ++.+|+... +.
T Consensus 94 iMi~~-pvtv~~d~tv~eA~~~m~~~~~--s~l~VVD~~gklvGI-------------------VT~rDL~~~-~~---- 146 (479)
T PRK07807 94 LVFDT-PVTLSPDDTVGDALALLPKRAH--GAVVVVDEEGRPVGV-------------------VTEADCAGV-DR---- 146 (479)
T ss_pred ccccC-CeEECCCCCHHHHHHHHHhcCC--ceEEEECCCCeEEEE-------------------EeHHHHhcC-cc----
Confidence 57778 9999999999999999999999 999999999999999 556665331 00
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
..++.++|+.+++++++++++.+++
T Consensus 147 -------------------------------------------------------~~~V~diMt~~~itV~~d~sL~eAl 171 (479)
T PRK07807 147 -------------------------------------------------------FTQVRDVMSTDLVTLPAGTDPREAF 171 (479)
T ss_pred -------------------------------------------------------CCCHHHhccCCceEECCCCcHHHHH
Confidence 0012356888999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++|.+++++++||||++|+++|+||++||+++...
T Consensus 172 ~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 172 DLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY 206 (479)
T ss_pred HHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 99999999999999988999999999999997654
No 25
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.1e-12 Score=107.83 Aligned_cols=96 Identities=22% Similarity=0.372 Sum_probs=83.2
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
.++++++ ++|+.+|++.|.++++.++||+|++ +++++|++|..|+.+.+.
T Consensus 2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~~---------------------~~~~~Givt~~Dl~~~~~-------- 51 (98)
T cd04618 2 KLVVFDT-KLPVKKAFNALVENGIRSAPLWDSR---------------------KQQFVGMLTITDFILILR-------- 51 (98)
T ss_pred eEEEECC-CCcHHHHHHHHHHcCCceEEEEeCC---------------------CCEEEEEEEHHHHhhhee--------
Confidence 4789999 9999999999999999999999953 258999999999987531
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
+.++.++++|.+|++.|. ++++++||++++ +++.+|+||++|++++
T Consensus 52 ------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---------------~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS---------------TGTGLYILTSRRILKF 98 (98)
T ss_pred ------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC---------------CCCceEEeehhhhhcC
Confidence 468999999999999999 999999998632 2578999999999863
No 26
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.6e-12 Score=112.98 Aligned_cols=132 Identities=20% Similarity=0.226 Sum_probs=92.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++++++++.+|++.|.++++ +++||+|++|+++|+ ++..|++.+..... ......
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~--~~l~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~~-~~~~~~- 59 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGV--GRVIVVDDNGKPVGV-------------------ITYRDLAFAEFEDN-ERGLPK- 59 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCC--CcceEECCCCCEEEE-------------------EeHHHHHHHhhccc-ccccch-
Confidence 7889999999999999999988 999999999999999 45555554321000 000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+.+. |.... . ...+ +.....+.++.++|..++.++.+++++.++++.|.++
T Consensus 60 -~~~~-----------~~~~~------~----~~~~-------~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 110 (135)
T cd04621 60 -KSIK-----------MKRKA------G----QKRY-------RYVKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEA 110 (135)
T ss_pred -hhhh-----------hhhhc------c----cccc-------cccccccccHHHhcCCCCeEECCCCCHHHHHHHHHHc
Confidence 0000 00000 0 0000 0001112245678888999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||++||++
T Consensus 111 ~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 111 NISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred CCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 9999999998 89999999999986
No 27
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=1.7e-12 Score=107.52 Aligned_cols=108 Identities=14% Similarity=0.191 Sum_probs=87.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.+++++.++.+|++.|.++++ +.+||+|++|+++|+ ++..|++.+....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~~--------- 52 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNT--NEIIVKDNEEKLKGV-------------------VTFTDILDLDLFE--------- 52 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCC--CeEEEEcCCCCEEEE-------------------EehHHhHHHHhhc---------
Confidence 7789999999999999999988 999999998999999 5666665431000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. . . ..++.++|.+++.++.+++++.++++.|.++
T Consensus 53 ---~--------~---~--------------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 86 (111)
T cd04626 53 ---S--------F---L--------------------------------EKKVFNIVSQDVFYVNEEDTIDEALDIMREK 86 (111)
T ss_pred ---c--------c---c--------------------------------cCcHHHHhcCCcEEEcCCCcHHHHHHHHHHc
Confidence 0 0 0 0012345677889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||+.||+.
T Consensus 87 ~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 87 QIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred CCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 9999999998 89999999999974
No 28
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2.8e-12 Score=105.80 Aligned_cols=106 Identities=22% Similarity=0.298 Sum_probs=88.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.++.++.+|++.|.+++. +.+||+|++|+++|+ ++..|++.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~~~--------- 53 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENI--NHLPVVDEDGRLVGI-------------------VTSWDISKAVARD--------- 53 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCC--ceEEEECCCCcEEEE-------------------EeHHHHHHHHhhC---------
Confidence 7889999999999999999988 999999999999999 6677775422100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. ..+.++|..++.++.+++++.++++.|.++
T Consensus 54 ---------~----------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 84 (110)
T cd04605 54 ---------K----------------------------------------KSVEDIMTRNVITATPDEPIDVAARKMERH 84 (110)
T ss_pred ---------c----------------------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHh
Confidence 0 001234567889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||+.||++
T Consensus 85 ~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 85 NISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred CCCEEeEECCCCcEEEEEEHHHhhh
Confidence 9999999999899999999999965
No 29
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=1e-12 Score=109.50 Aligned_cols=108 Identities=20% Similarity=0.198 Sum_probs=85.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++++++++.+|++.|.+++ . +.+||+|++|+++|+ ++..|++.....
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~dl~~~~~~--------- 52 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQ--RRFVVVDNEGRYVGI-------------------ISLADLRAIPTS--------- 52 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCc--eeEEEEcCCCcEEEE-------------------EEHHHHHHHHHh---------
Confidence 788999999999999997775 7 999999998999999 567776652100
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc--CCceEeCCCCcHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR--SEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~--~~vvt~~~~~sl~~v~~~m 360 (412)
. .. ..++.++|. .+++++.+++++.++++.|
T Consensus 53 ---------------~-~~-------------------------------~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~ 85 (114)
T cd04801 53 ---------------Q-WA-------------------------------QTTVIQVMTPAAKLVTVLSEESLAEVLKLL 85 (114)
T ss_pred ---------------h-cc-------------------------------ccchhhhhcccccceEECCCCcHHHHHHHH
Confidence 0 00 000122343 2367999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
.+++.+++||+|++|+++||||..||++
T Consensus 86 ~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 86 EEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred HHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 9999999999998889999999999875
No 30
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.42 E-value=2.9e-12 Score=105.08 Aligned_cols=103 Identities=19% Similarity=0.250 Sum_probs=86.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.+++++.++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~--~~~~v~d~~g~~~Gi-------------------v~~~dl~~~~~----------- 50 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDL--RALTVVDADGQPLGF-------------------VTRREAARASG----------- 50 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCC--CEEEEECCCCCEEEE-------------------EeHHHHHHhcc-----------
Confidence 6789999999999999999988 999999988999999 56666654110
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. ++.++|...+.++.+++++.+++++|.++
T Consensus 51 --------------~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (106)
T cd04582 51 --------------G------------------------------------CCGDHAEPFKVTVSVDDDLRIVLSRMFAH 80 (106)
T ss_pred --------------c------------------------------------chhhhcccCCEEECCCCCHHHHHHHHHHC
Confidence 0 01123556678899999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+++++||+|++|+++|+||+.|+++
T Consensus 81 ~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 81 DMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred CCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999999899999999999975
No 31
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=2e-12 Score=106.79 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=87.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+++. +.+||+|++|+++|+ ++..|++.... +
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~-----~----- 52 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGH--SRFPVVDEKNKVVGI-------------------VTSKDVAGKDP-----D----- 52 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCC--CceeEECCCCeEEEE-------------------ecHHHHhcccc-----c-----
Confidence 7889999999999999999988 999999999999999 55666543100 0
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.++.++|..++.++.+++++.+++++|.++
T Consensus 53 --------------------------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 82 (108)
T cd04596 53 --------------------------------------------------TTIEKVMTKNPITVNPKTSVASVAHMMIWE 82 (108)
T ss_pred --------------------------------------------------ccHHHHhcCCCeEECCCCCHHHHHHHHHHc
Confidence 001234556788999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||+.|+++
T Consensus 83 ~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 83 GIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred CCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999998899999999999986
No 32
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=2e-12 Score=107.58 Aligned_cols=114 Identities=16% Similarity=0.274 Sum_probs=88.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++++++++.+|++.|.++++ +.+||+|++|+++|+ ++.+|++++.... ...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~~~-~~~----- 55 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGY--SAIPVLDKEGKYVGT-------------------ISLTDILWKLKGL-ENL----- 55 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCC--ceeeeECCCCcEEEE-------------------EeHHHHHHHhhcc-Cch-----
Confidence 8899999999999999999998 999999998999999 6677776543100 000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ..+. ..++.++|..++.++.+++++.++++.|.++
T Consensus 56 -----------~~-~~~~-------------------------------~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~ 92 (116)
T cd04643 56 -----------DL-ERLV-------------------------------DLKVIDVMNTDVPVIIDDADIEEILHLLIDQ 92 (116)
T ss_pred -----------hH-HHHh-------------------------------CCcHHHHhcCCCceecCCCCHHHHHHHHhcC
Confidence 00 0000 0012346777899999999999999999886
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+ .+||+|++|+++|+||..|++++
T Consensus 93 ~--~~~Vv~~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 93 P--FLPVVDDDGIFIGIITRREILKA 116 (116)
T ss_pred C--ceeEEeCCCeEEEEEEHHHhhcC
Confidence 5 59999998999999999999864
No 33
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=1.4e-12 Score=111.11 Aligned_cols=116 Identities=18% Similarity=0.202 Sum_probs=84.6
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ ..+||+|++|+++|+ ++..|++....
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~--~~~~V~d~~~~~~Gi-------------------v~~~dl~~~~~----------- 50 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGV--RLLLVVDSDDNFIGV-------------------ITAVDLLGEEP----------- 50 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCC--cEEEEEcCCCcEEEE-------------------EEHHHHhhChh-----------
Confidence 7789999999999999999988 999999988999999 55666654100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe------CCCCcHHHHH
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC------HPWSSLMAVI 357 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~------~~~~sl~~v~ 357 (412)
+ ... .... . . +...++.++|+++.+++ .+++++.+++
T Consensus 51 ----~-----~~~---~~~~-------------~--~----------~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l 93 (126)
T cd04640 51 ----I-----KRI---QEGG-------------I--S----------RSELTVADVMTPKEDLKALDLEELENASVGDVV 93 (126)
T ss_pred ----h-----HHH---HHcC-------------C--C----------chheEHHHhcCchhhhccccHHHhccCcHHHHH
Confidence 0 000 0000 0 0 00011345666554333 3688999999
Q ss_pred HHHHHcCCcEEEEEeCC-CcEEEEEehHHHHH
Q 015178 358 MQALARRVSYVWVVEED-CTLVGIVTFTGMLR 388 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~-~~lvGIVT~~DIL~ 388 (412)
++|.+++.+++||||++ |+++|+||++||++
T Consensus 94 ~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 94 ETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred HHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 99999999999999987 79999999999986
No 34
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.4e-12 Score=105.33 Aligned_cols=110 Identities=25% Similarity=0.348 Sum_probs=89.0
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+++++++.++.+|++.|.+++. +.+||+|++++++|+ ++..|++..+...
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~Gi-------------------v~~~~l~~~~~~~--------- 52 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNI--GAVVVVDDGGRLVGI-------------------FSERDIVRKVALR--------- 52 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EehHHHHHHHhhc---------
Confidence 7889999999999999999988 999999988999999 5677766532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. .. ....+.++|..++.++.+++++.++++.|.++
T Consensus 53 -----------------~~-------------~~--------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~ 88 (113)
T cd04623 53 -----------------GA-------------SA--------------LDTPVSEIMTRNVITVTPDDTVDEAMALMTER 88 (113)
T ss_pred -----------------CC-------------Cc--------------cccCHHHhcCCCcEEECCCCcHHHHHHHHHHc
Confidence 00 00 00113456777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..||++
T Consensus 89 ~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 89 RFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred CCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 9999999998 89999999999976
No 35
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=1.5e-12 Score=112.21 Aligned_cols=132 Identities=28% Similarity=0.371 Sum_probs=90.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.++.++.+|++.|.+++. ..+||+|++|+++|+| +..|++.+...... +.
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~~~~~~Gvi-------------------~~~dl~~~~~~~~~-~~---- 57 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHI--SGLPVVDDDGRLVGIV-------------------SEGDLLRRAELGTE-RR---- 57 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCC--CCceEECCCCCEEEEe-------------------eHHHHHHHhcccCc-ch----
Confidence 8889999999999999999988 9999999989999995 45555443211000 00
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
...++ .+....+.... .+.+.....+.++|..+++++.+++++.+++..|.++
T Consensus 58 ~~~~~---~~~~~~~~~~~------------------------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 110 (135)
T cd04586 58 RARWL---DLLAGAEELAA------------------------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEH 110 (135)
T ss_pred hhhHH---HHhcchHHHHH------------------------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHc
Confidence 00010 00000000000 0000001124567778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+.+++||+| +|+++||||+.|++++
T Consensus 111 ~~~~l~Vvd-~g~~~Gvit~~di~~~ 135 (135)
T cd04586 111 RIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred CCCccCEec-CCEEEEEEEhHhhhcC
Confidence 999999999 7999999999999863
No 36
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.40 E-value=3.9e-12 Score=104.49 Aligned_cols=105 Identities=29% Similarity=0.344 Sum_probs=87.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.++.++.+|++.|.++++ ..+||+|++|+++|+ ++..|++.....+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~dl~~~~~~~--------- 53 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKV--DSLLVVDKDNKLLGI-------------------VSLESLEQAYKEA--------- 53 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCC--ceEEEEcCCCcEEEE-------------------EEHHHHHHHhhcC---------
Confidence 7789999999999999999988 999999998999999 6677765421000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.++.++|...+.++.+++++.++++.|.++
T Consensus 54 --------------------------------------------------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 83 (109)
T cd04583 54 --------------------------------------------------KSLEDIMLEDVFTVQPDASLRDVLGLVLKR 83 (109)
T ss_pred --------------------------------------------------CcHhHhhcCCceEECCCCcHHHHHHHHHHc
Confidence 001234567788999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||.+|+++
T Consensus 84 ~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 84 GPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred CCceeeEECCCCeEEEEEehHHhhc
Confidence 9999999999899999999999975
No 37
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=2.1e-12 Score=109.03 Aligned_cols=122 Identities=25% Similarity=0.379 Sum_probs=91.6
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++.++.++.+|+++|.+.+. ..+||+|++ |+++|+ ++..|++.++......+.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~i~V~d~~~~~~~G~-------------------v~~~dl~~~~~~~~~~~~--- 58 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGF--RRLPVVDEGTGKLVGI-------------------ITATDILKYLGGGEKFNK--- 58 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCc--ccceeEeCCCCEEEEE-------------------EEHHHHHHHhhccchhcc---
Confidence 7889999999999999999988 999999987 999999 567777654321100000
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
. .... +. .....++.++|..++++|.+++++.++++.|.+
T Consensus 59 -----~---~~~~----------------------------~~----~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~ 98 (125)
T cd04631 59 -----I---KTGN----------------------------GL----EAINEPVRSIMTRNVITITPDDSIKDAAELMLE 98 (125)
T ss_pred -----c---cccc----------------------------cc----hhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHH
Confidence 0 0000 00 000112345677889999999999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
++.+++||+|++|+++|+||..||+++
T Consensus 99 ~~~~~~~V~~~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 99 KRVGGLPVVDDDGKLVGIVTERDLLKA 125 (125)
T ss_pred cCCceEEEEcCCCcEEEEEEHHHhhcC
Confidence 999999999987899999999999863
No 38
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.2e-12 Score=107.44 Aligned_cols=119 Identities=24% Similarity=0.349 Sum_probs=91.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+.++ +.+||+|++|+++|+ ++..|++.+.......+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~~~~~----- 56 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRI--RHLPVVNEDGKLVGL-------------------LTQRDLLRAALSSLSDN----- 56 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCc--ccccEECCCCCEEEE-------------------EEHHHHHHHhccccccc-----
Confidence 7889999999999999999999 999999998999999 56677665321000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. + ...+.....+.++|..+++++.+++++.++++.|.++
T Consensus 57 ---------~~---~----------------------------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 96 (122)
T cd04803 57 ---------GE---E----------------------------SLTKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVEN 96 (122)
T ss_pred ---------cc---c----------------------------ccccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHc
Confidence 00 0 0000001123456778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..|+++
T Consensus 97 ~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 97 KIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred CCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 9999999999889999999999985
No 39
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=3.7e-12 Score=105.66 Aligned_cols=110 Identities=23% Similarity=0.237 Sum_probs=88.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++..|+++....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~-------------------v~~~dl~~~~~~~--------- 52 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGS--RALPVVDDKKRLVGI-------------------ITRYDVLSYALES--------- 52 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCC--ceEeEEcCCCCEEEE-------------------EEHHHHHHhhhhh---------
Confidence 6778999999999999999988 999999998999999 5667765421000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+.+. ..++.++|..++.++.+++++.++++.|.++
T Consensus 53 --------------~~~~-------------------------------~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04615 53 --------------EELK-------------------------------DAKVREVMNSPVITIDANDSIAKARWLMSNN 87 (113)
T ss_pred --------------hhhc-------------------------------CCcHHHhccCCceEECCCCcHHHHHHHHHHc
Confidence 0000 0012346777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||++
T Consensus 88 ~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 88 NISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CCCeeeEECCCCeEEEEEEHHHhhc
Confidence 9999999999899999999999975
No 40
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.1e-12 Score=104.59 Aligned_cols=109 Identities=17% Similarity=0.316 Sum_probs=89.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.+++++.++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++..+..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~l~~~~~~~--------- 52 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENV--GSVVVVDPDERPIGI-------------------VTERDIVRAVAAG--------- 52 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCC--CEEEEECCCCCEEEE-------------------eeHHHHHHHHhcc---------
Confidence 6789999999999999999988 999999998999999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ...++.++|..++.++.+++++.+++++|.++
T Consensus 53 ----------------~~------------------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 86 (112)
T cd04624 53 ----------------ID------------------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKN 86 (112)
T ss_pred ----------------CC------------------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHc
Confidence 00 00012345677899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+++.+||+|++|+++|+||..|+++
T Consensus 87 ~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 87 NIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred CccEEEEEcCCCcEEEEEEHHHhcc
Confidence 9999999998899999999999975
No 41
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.39 E-value=3.2e-12 Score=105.84 Aligned_cols=110 Identities=21% Similarity=0.289 Sum_probs=89.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++++++++.++++.|.+.+. +.+||+|++|+++|+ ++..+++.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~d~~~~~~G~-------------------v~~~~i~~~~~~~--------- 53 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGL--GMTAVVDEDGRLVGI-------------------FTDGDLRRALEKG--------- 53 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCc--cEEEEEcCCCCEEEE-------------------echHHHHHHHhcc---------
Confidence 6778999999999999988887 999999998999999 6667766532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. +...++.++|..++.++.+++++.+++++|.++
T Consensus 54 ----------------~~-----------------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 88 (114)
T cd04604 54 ----------------LD-----------------------------ILTLPVADVMTRNPKTIDPDALAAEALELMEEN 88 (114)
T ss_pred ----------------Cc-----------------------------cccCCHHHhhccCCeEECCCCcHHHHHHHHHHc
Confidence 00 000113456777889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||++
T Consensus 89 ~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 89 KITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCCEEEEECCCCCEEEEEEHHHhhc
Confidence 9999999998899999999999986
No 42
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=2.6e-12 Score=107.99 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=89.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++++++++.+|++.|.+.+. +.+||+|++|+++|+++ ..|++.........+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~~~~~~~~--- 58 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGF--TGLPVVQKAGELIGIIT-------------------RRDIIRAGSVRTSVEDQ--- 58 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCC--CcccEECCCCcEEEEEE-------------------cHHHHhhccccccccch---
Confidence 7889999999999999999988 99999999899999955 44444310000000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. .. .....++.++|.++++++.+++++.++++.|.++
T Consensus 59 ---~~-----------~~----------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04635 59 ---QR-----------TQ----------------------------TKASPTVEKIMSTPVYSVTPDDSIATAVELMLEH 96 (122)
T ss_pred ---hh-----------hh----------------------------hhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHc
Confidence 00 00 0000113456778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+.+++||+|++|+++|+||..|++++
T Consensus 97 ~~~~~~Vvd~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 97 DIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred CCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence 99999999998999999999999864
No 43
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.39 E-value=6.5e-12 Score=103.81 Aligned_cols=107 Identities=21% Similarity=0.290 Sum_probs=87.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
++++.++.++.+|++.|.++++ +.+||+|++ |+++|+ ++..|++.+.....
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~--~~~~v~~~~~~~~~G~-------------------v~~~~l~~~~~~~~------- 54 (111)
T cd04590 3 IVALDADDTLEEILELIAESGH--SRFPVYDGDLDNIIGV-------------------VHVKDLLRALAEGE------- 54 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCC--ceEEEECCCCceEEEE-------------------EEHHHHHHHHHcCC-------
Confidence 8899999999999999999988 999999998 999999 66777765321000
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
. . .++.+++ .++.++.+++++.++++.|.+
T Consensus 55 -----------~--------------------------------~------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~ 84 (111)
T cd04590 55 -----------E--------------------------------D------LDLRDLL-RPPLFVPESTPLDDLLEEMRK 84 (111)
T ss_pred -----------C--------------------------------c------CCHHHHh-cCCeecCCCCcHHHHHHHHHh
Confidence 0 0 0011233 467899999999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
++.+++||+|++|+++|+||++|+++
T Consensus 85 ~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 85 ERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred cCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 99999999999899999999999975
No 44
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=2.7e-12 Score=106.51 Aligned_cols=112 Identities=23% Similarity=0.263 Sum_probs=88.8
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.++.++.+|++.|.+.+. +.+||+|++|+++|+ ++..|+++.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~--------- 52 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKI--SGGPVVDDNGNLVGF-------------------LSEQDCLKQLLES--------- 52 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCC--CCccEECCCCeEEEE-------------------eehHHHHHHhhhh---------
Confidence 7789999999999999998888 999999999999999 5666665422000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. .... . ...+.++|..+++++.+++++.++++.|.++
T Consensus 53 ---~------------~~~~------------~----------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 89 (114)
T cd04629 53 ---S------------YHCD------------G----------------VATVRDIMTTEVLTVSPDDSIVDLAQLMLKA 89 (114)
T ss_pred ---h------------hccC------------C----------------CccHHHHhccCceEECCCCcHHHHHHHHHHh
Confidence 0 0000 0 0113456777889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+.+++||+|+ |+++|+||..||+++
T Consensus 90 ~~~~~~Vv~~-~~~~Gvit~~di~~~ 114 (114)
T cd04629 90 KPKRYPVVDD-GKLVGQISRRDVLRA 114 (114)
T ss_pred CCCccCEEEC-CEEEEEEEHHHHhcC
Confidence 9999999998 899999999999863
No 45
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=4.4e-12 Score=105.67 Aligned_cols=110 Identities=20% Similarity=0.306 Sum_probs=86.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++.++.++.+|++.|.+++ . +.++|+| +|+++|+ ++..|++.+...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~G~-------------------v~~~dl~~~~~~~-------- 52 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDS--SCVLVVE-KGRLLGI-------------------FTERDIVRLTAIG-------- 52 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCC--ceEEEcC-CCcEEEE-------------------EeHHHHHHHHhcC--------
Confidence 678999999999999998887 5 6777777 5899999 6777776532100
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC--CcHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW--SSLMAVIMQA 360 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~--~sl~~v~~~m 360 (412)
. ... ..++.++|..+++++.++ +++.+++++|
T Consensus 53 ----------------------------~----~~~--------------~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~ 86 (115)
T cd04620 53 ----------------------------K----DLS--------------DLPIGEVMTQPVVTLQESEIQDIFTALSLF 86 (115)
T ss_pred ----------------------------C----Ccc--------------ccCHHHhcCCCcEEEecccccCHHHHHHHH
Confidence 0 000 011234677788899987 6899999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
.+++.+++||+|++|+++|+||++|++++
T Consensus 87 ~~~~~~~~pVvd~~~~~~Gvit~~dl~~~ 115 (115)
T cd04620 87 RQHQIRHLPVLDDQGQLIGLVTAESIRQV 115 (115)
T ss_pred HHhCCceEEEEcCCCCEEEEEEhHHhhcC
Confidence 99999999999998999999999999874
No 46
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=4e-12 Score=105.09 Aligned_cols=108 Identities=24% Similarity=0.247 Sum_probs=88.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
..++.+++++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++.++...
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~--~~~~V~~~~~~~~G~-------------------v~~~~l~~~~~~~--------- 52 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQ--HEFPVVDGDGHLVGL-------------------LTRDDLIRALAEG--------- 52 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCC--CcceEECCCCcEEEE-------------------eeHHHHHHHHHhc---------
Confidence 6788999999999999998888 999999998999999 5667765532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ..++.++|..+++++.+++++.++++.|.++
T Consensus 53 -----------------~~------------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~ 85 (111)
T cd04639 53 -----------------GP------------------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQG 85 (111)
T ss_pred -----------------CC------------------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhc
Confidence 00 0012345667889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..|+.+
T Consensus 86 ~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 86 GAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred CCceeeEEcCCCCEEEEEEHHHhhc
Confidence 9999999998889999999999875
No 47
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=3.4e-12 Score=108.65 Aligned_cols=123 Identities=26% Similarity=0.358 Sum_probs=89.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|+++|.+.++ +++||+|++|+++|+ +|..|++.++.....
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~G~-------------------it~~dl~~~~~~~~~------- 54 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGI--SRLPVVDDNGKLTGI-------------------VTRHDIVDFVVRDRD------- 54 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCC--CEEEEECCCCcEEEE-------------------EEHHHHHHHHhhhhh-------
Confidence 7789999999999999999999 999999999999999 556666543210000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+.... +.....+.+ ....+.++|..++++|.+++++.+++..|.++
T Consensus 55 -~~~~~--~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~ 100 (128)
T cd04632 55 -KARTG--DRSGEKERM-------------------------------LDLPVYDAMSSPVITASPNDSVRDAVDRMLEN 100 (128)
T ss_pred -hcchh--hhhhhhhhh-------------------------------ccCcHHHHhcCCCceECCCCcHHHHHHHHHhC
Confidence 00000 000000000 00123467888999999999999999999999
Q ss_pred CCcEEEEEe--CCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVE--EDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD--~~~~lvGIVT~~DIL~ 388 (412)
+.+.+||++ ++|+++|+||..||++
T Consensus 101 ~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 101 DDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 999999985 4689999999999986
No 48
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.38 E-value=6.2e-12 Score=104.62 Aligned_cols=111 Identities=21% Similarity=0.403 Sum_probs=91.1
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCc
Q 015178 199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPK 278 (412)
Q Consensus 199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~ 278 (412)
+.++ ++++.+++++.+|+.+|.++++ +++||++.. +++|+ +|.+|++.....+.
T Consensus 5 ~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~~v~~~~-~l~Gi-------------------it~~di~~~~~~~~--- 58 (117)
T COG0517 5 MTKD-VITVKPDTSVRDALLLMSENGV--SAVPVVDDG-KLVGI-------------------ITERDILRALAAGG--- 58 (117)
T ss_pred ccCC-CEEECCCCcHHHHHHHHHHcCC--CEEEEeeCC-EEEEE-------------------EEHHHHHHHHhccC---
Confidence 4456 9999999999999999999999 999999753 79999 66788776431100
Q ss_pred hhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHH
Q 015178 279 DLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIM 358 (412)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~ 358 (412)
. . . .++.++|+.+++++.+++++.++++
T Consensus 59 -------------------------------------~---~------~------~~v~~v~~~~~~~~~~~~~~~~~~~ 86 (117)
T COG0517 59 -------------------------------------K---R------L------LPVKEVMTKPVVTVDPDTPLEEALE 86 (117)
T ss_pred -------------------------------------C---c------c------ccHHHhccCCcEEECCCCCHHHHHH
Confidence 0 0 0 0134578889999999999999999
Q ss_pred HHHH-cCCcEEEEEeCCC-cEEEEEehHHHH
Q 015178 359 QALA-RRVSYVWVVEEDC-TLVGIVTFTGML 387 (412)
Q Consensus 359 ~m~~-~~ihrl~VVD~~~-~lvGIVT~~DIL 387 (412)
.|.+ ++++++||+|+++ +++|+||++|++
T Consensus 87 ~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 87 LMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred HHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 9999 7999999999986 999999999974
No 49
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.37 E-value=4.9e-12 Score=104.57 Aligned_cols=110 Identities=24% Similarity=0.296 Sum_probs=90.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+.++ +.+||+|++|+++|+ ++..|++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~--------- 52 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPE--NNFPVVDDDGRLVGI-------------------VSLDDIREILFDP--------- 52 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCC--cceeEECCCCCEEEE-------------------EEHHHHHHHHhcc---------
Confidence 7889999999999999999988 999999998999999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. . + ..++.++|..++.++.+++++.++++.|.+.
T Consensus 53 ---~~-----------~-------------------~------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 87 (114)
T cd04613 53 ---SL-----------Y-------------------D------------LVVASDIMTKPPVVVYPEDSLEDALKKFEDS 87 (114)
T ss_pred ---cc-----------c-------------------c------------cEEHHHhccCCCcEEcCCCCHHHHHHHHhhC
Confidence 00 0 0 0113456778899999999999999999999
Q ss_pred CCcEEEEEeC-CCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEE-DCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~-~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ +++++|+||..|+++
T Consensus 88 ~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 88 DYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred CccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 9999999998 789999999999975
No 50
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=4e-12 Score=107.61 Aligned_cols=116 Identities=26% Similarity=0.425 Sum_probs=88.4
Q ss_pred ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcC---CCCCCC
Q 015178 116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLL---SPTPNQ 191 (412)
Q Consensus 116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l---~~l~~~ 191 (412)
++.++.+++++.+|++.|. ++++++||++.+ .++.+|+||+.|+++++.++.... ......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~---------------~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~ 66 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE---------------SGEVIGILSQRRLVEFLWENARSFPGLDPLYPI 66 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC---------------CCcEEEEEEHHHHHHHHHHhHHhccchhhhhhh
Confidence 4778999999999999999 788999997531 156789999999999875432111 110001
Q ss_pred CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccC
Q 015178 192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFN 249 (412)
Q Consensus 192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~ 249 (412)
.+....++..+ +.++.+++++.+|++.|.++++ +.+||+|++|+++|+||..|++
T Consensus 67 ~~~~~~~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 67 PLRDLTIGTSD-VISINGDQPLIDALHLMHNEGI--SSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred hhhhcccCcCC-ceEeCCCCCHHHHHHHHHHcCC--ceEEEECCCCcEEEEEeHHHhh
Confidence 12222356777 9999999999999999999999 9999999989999997655554
No 51
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=5.2e-12 Score=106.43 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=88.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.++++.++||++. +++++|+++..||+.++.+.. ..
T Consensus 2 ~~~~i~~-~~~l~~a~~~~~~~~~~~~pVv~~----------------------~~~~~Giv~~~dl~~~~~~~~-~~-- 55 (120)
T cd04641 2 NIATARP-DTPLIDVLDMLVERRVSALPIVDE----------------------NGKVVDVYSRFDVINLAKEGA-YN-- 55 (120)
T ss_pred CcEEEcC-CCCHHHHHHHHHHcCCCeeeEECC----------------------CCeEEEEEeHHHHHHHHhcCc-cc--
Confidence 5789999 999999999999999999999985 368999999999998754321 10
Q ss_pred ccccCCchhhhcc-CC--CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178 99 ESALQDPVSVLLP-EA--SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL 174 (412)
Q Consensus 99 ~~~l~~~V~dvm~-~~--~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI 174 (412)
....++.+.|. .. ..++.++.+++++.++++.|. ++++++||+++ +++++|+||++|+
T Consensus 56 --~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~~~~~Givt~~di 117 (120)
T cd04641 56 --NLDLTVGEALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE----------------NKRVEGIISLSDI 117 (120)
T ss_pred --cccCCHHHHHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC----------------CCCEEEEEEHHHh
Confidence 11122332211 11 123789999999999999999 89999999863 2568999999999
Q ss_pred HHH
Q 015178 175 IRY 177 (412)
Q Consensus 175 v~~ 177 (412)
++|
T Consensus 118 ~~~ 120 (120)
T cd04641 118 LQF 120 (120)
T ss_pred hcC
Confidence 875
No 52
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.37 E-value=5.4e-12 Score=110.95 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=96.7
Q ss_pred HHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 171 QEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 171 q~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
-..|+++|.++.+ ..+..-.+|+++ ++.+.+++++.+|+++|+++++ |-+||+++ +++||-
T Consensus 50 ~k~Il~aL~e~e~-------~~ita~~iM~sp-vv~v~pdDsi~~vv~lM~~~g~--SQlPVi~~-~k~VGs-------- 110 (187)
T COG3620 50 VKRILEALEEAEK-------TRITAKTIMHSP-VVSVSPDDSISDVVNLMRDKGI--SQLPVIEE-DKVVGS-------- 110 (187)
T ss_pred HHHHHHHHHHhhc-------ceEeHhhhccCC-eeEECchhhHHHHHHHHHHcCC--ccCceeeC-Ceeeee--------
Confidence 3556666655432 222333479999 9999999999999999999999 99999987 799999
Q ss_pred cchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccccccc
Q 015178 251 CDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVR 330 (412)
Q Consensus 251 ~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 330 (412)
+|+.|+.+..- +-++.
T Consensus 111 -----------ItE~~iv~~~l-------------------------e~~e~---------------------------- 126 (187)
T COG3620 111 -----------ITENDIVRALL-------------------------EGMES---------------------------- 126 (187)
T ss_pred -----------ecHHHHHHHHh-------------------------ccccc----------------------------
Confidence 45666554210 00000
Q ss_pred ccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 331 SRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 331 ~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
.++..++++|..+..++.|+.++..+-.++-.| ..+-|++ +|+++||||..||++.+.
T Consensus 127 i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~e-~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 127 IRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVVE-NGKVVGIITKADIMKLLA 184 (187)
T ss_pred hhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEEe-CCceEEEEeHHHHHHHHh
Confidence 001125678999999999999997665555443 3566775 589999999999998765
No 53
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.36 E-value=7.6e-12 Score=104.54 Aligned_cols=119 Identities=23% Similarity=0.286 Sum_probs=89.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.++.++.+|++.|.+.++ ..+||+|+ |+++|+ ++..|++.+......
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------i~~~~l~~~~~~~~~------- 53 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSI--RRLPVVDR-GKLVGI-------------------VTDRDLKLASPSKAT------- 53 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCc--ceeeEecC-CeEEEE-------------------EeHHHHHHhhhcccc-------
Confidence 7789999999999999999988 99999998 999999 555665543210000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ..... . + . ....++.++|.++++++.+++++.+++..|.++
T Consensus 54 ---~~---~~~~~-~-~--------------------------~---~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04585 54 ---TL---DIWEL-Y-Y--------------------------L---LSKIKVSDIMTRDPITVSPDASVEEAAELMLER 96 (122)
T ss_pred ---cc---cchhh-h-h--------------------------h---hcccCHHHhccCCCeEeCCCCcHHHHHHHHHHc
Confidence 00 00000 0 0 0 001123456778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||++
T Consensus 97 ~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 97 KISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred CCCceeEECCCCcEEEEEEHHHhhh
Confidence 9999999998899999999999986
No 54
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.36 E-value=1e-11 Score=102.35 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=88.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+.+. ..+||+|+ |+++|+ ++..|++++...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~~l~~~~~~~--------- 51 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRI--SSIVVVDD-GRPLGI-------------------VTERDILRLLASG--------- 51 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EeHHHHHHHHhcC---------
Confidence 6789999999999999999888 99999987 899999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. . ...++.++|..+++++.+++++.++++.|.+.
T Consensus 52 ----------------~---------------~---------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~ 85 (111)
T cd04611 52 ----------------P---------------D---------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREH 85 (111)
T ss_pred ----------------C---------------C---------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHc
Confidence 0 0 00112345677899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||+.||++
T Consensus 86 ~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 86 GIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred CCeEEEEECCCCcEEEEEEhHHhhc
Confidence 9999999999899999999999986
No 55
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.36 E-value=6.7e-12 Score=103.91 Aligned_cols=110 Identities=13% Similarity=0.199 Sum_probs=87.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.+++. +.+||+|+ |+++|+ ++..|++....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~----------- 49 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRV--SCVLVMDG-NKLVGI-------------------FTSKDIALRVV----------- 49 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCC--CeEEEEEC-CEEEEE-------------------EEhHHHHHHHH-----------
Confidence 7789999999999999999988 99999998 999999 56677653210
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
... . + .. ..++.++|..++.++.+++++.++++.|.++
T Consensus 50 -----------------~~~-------~--------~------~~----~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~ 87 (113)
T cd04587 50 -----------------AQG-------L--------D------PE----STLVERVMTPNPVCATSDTPVLEALHLMVQG 87 (113)
T ss_pred -----------------hcC-------C--------C------cC----cCCHHHhcCCCCeEEcCCCCHHHHHHHHHHc
Confidence 000 0 0 00 0113456777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||+.
T Consensus 88 ~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 88 KFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCcccEECCCCCEEEEEEHHHhcc
Confidence 9999999998899999999999975
No 56
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.35 E-value=4.2e-12 Score=133.25 Aligned_cols=108 Identities=13% Similarity=0.114 Sum_probs=88.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
.+++++++++.+|+++|.++++ +++||+|+ +|+++|+| |.+|++....
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~--~~vpVVD~~~~~gkLvGIV-------------------T~~DLr~~~~-------- 157 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGH--STVAVTEDGTAHGKLLGIV-------------------TSRDYRISRM-------- 157 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCC--CeEEEEeCCCcCCEEEEEE-------------------EcHHhhcccc--------
Confidence 4689999999999999999999 99999997 58999994 5555532100
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMAVIM 358 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~ 358 (412)
. . ..++.++|+. +++++++++++.++++
T Consensus 158 ------~------------~--------------------------------~~~V~dIMt~~~~~itv~~d~~l~eAl~ 187 (502)
T PRK07107 158 ------S------------L--------------------------------DTKVKDFMTPFEKLVTANEGTTLKEAND 187 (502)
T ss_pred ------C------------C--------------------------------CCCHHHHhCCCCCeEEECCCCcHHHHHH
Confidence 0 0 0113456765 7899999999999999
Q ss_pred HHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 359 QALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 359 ~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
+|.++++++|||||++++|+|+||++||++.-
T Consensus 188 lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 188 IIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK 219 (502)
T ss_pred HHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence 99999999999999989999999999999864
No 57
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.35 E-value=7.7e-12 Score=102.90 Aligned_cols=105 Identities=24% Similarity=0.332 Sum_probs=83.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.++++.|.+++. +++||+|++|+++|+++ ..|++..... .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~G~v~-------------------~~~l~~~~~~----~----- 53 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGI--SGLPVVDDDGKLVGIVT-------------------NRDLRFETDL----D----- 53 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCC--ceEEEEcCCCEEEEEEE-------------------hhHeeecccC----C-----
Confidence 7789999999999999999988 99999999899999955 4444321000 0
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC-CCcHHHHHHHHHH
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP-WSSLMAVIMQALA 362 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~-~~sl~~v~~~m~~ 362 (412)
.++.++|..++..+.+ ++++.+++++|.+
T Consensus 54 --------------------------------------------------~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (110)
T cd04601 54 --------------------------------------------------KPVSEVMTPENLLTTVEGTSLEEALELLHE 83 (110)
T ss_pred --------------------------------------------------CCHHHhcccCceEEecCCCCHHHHHHHHHH
Confidence 0012344455566666 9999999999999
Q ss_pred cCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
++.+++||+|++|+++|+||.+|+++
T Consensus 84 ~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 84 HKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred hCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 99999999998899999999999985
No 58
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=6.3e-12 Score=103.98 Aligned_cols=103 Identities=26% Similarity=0.294 Sum_probs=82.9
Q ss_pred EEeCCCcHHHHHHHHHhcC-----CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 206 AIQYDEPAAFAIPLIAQSH-----INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 206 tv~~~~~~~~a~~~m~~~~-----i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
++.+++++.++++.|.+++ . ..+||+|++|+++|+ ++..|++..- .+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvd~~~~~~G~-------------------v~~~~l~~~~-----~~-- 52 (109)
T cd04606 1 AVREDWTVGEALEYLRRNADDPETI--YYIYVVDEEGRLLGV-------------------VSLRDLLLAD-----PD-- 52 (109)
T ss_pred CccccCcHHHHHHHHHhccCcccce--eEEEEECCCCCEEEE-------------------EEHHHHhcCC-----Cc--
Confidence 3578899999999998876 5 689999988999999 4555554310 00
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m 360 (412)
.++.++|..++.++.+++++.++++.|
T Consensus 53 -----------------------------------------------------~~v~~~~~~~~~~i~~~~~~~~~~~~~ 79 (109)
T cd04606 53 -----------------------------------------------------TPVSDIMDTDVISVSADDDQEEVARLF 79 (109)
T ss_pred -----------------------------------------------------chHHHHhCCCCeEEcCCCCHHHHHHHH
Confidence 001234556789999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
.+++.+++||+|++|+++|+||..|++++
T Consensus 80 ~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 80 EKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred HHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 99999999999988999999999999976
No 59
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.35 E-value=1.8e-11 Score=100.91 Aligned_cols=107 Identities=23% Similarity=0.307 Sum_probs=88.0
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++++++++.+|++.|.++++ +.+||+|+ |+++|+ ++..|+++....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~~l~~~~~~~~-------- 52 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHI--HGAPVVDD-GKLVGI-------------------VTLSDIAHAIARGL-------- 52 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EEHHHHHHHHhccc--------
Confidence 7889999999999999999988 99999998 999999 56677665321000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. . ..+.++|..++.++.+++++.+++++|.++
T Consensus 53 --------------------------------~----------~------~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~ 84 (110)
T cd04588 53 --------------------------------E----------L------AKVKDVMTKDVITIDEDEQLYDAIRLMNKH 84 (110)
T ss_pred --------------------------------c----------c------cCHHHHhcCCceEECCCCCHHHHHHHHHhc
Confidence 0 0 012345667889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||++
T Consensus 85 ~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 85 NVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred CCCEEEEECCCCCEEEEEEhHHhhc
Confidence 9999999998899999999999975
No 60
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.34 E-value=1.3e-11 Score=101.91 Aligned_cols=108 Identities=24% Similarity=0.362 Sum_probs=87.0
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.+++++.++.+|.+.|.+++. +.+||+|+ |+++|+ ++..|++.+....
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~i~V~~~-~~~~G~-------------------v~~~~l~~~~~~~--------- 51 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRV--SSLLVVDD-GRLVGI-------------------VTDRDLRNRVVAE--------- 51 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CeEEEEEC-CEEEEE-------------------EEhHHHHHHHhcc---------
Confidence 7889999999999999999988 99999998 899999 5566665421000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+ .. . ..++.++|..+++++.+++++.+++++|.++
T Consensus 52 --------~-------~~---------------~---------------~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~ 86 (111)
T cd04800 52 --------G-------LD---------------P---------------DTPVSEVMTAPPITIPPDATVFEALLLMLER 86 (111)
T ss_pred --------C-------CC---------------c---------------cCCHHHHhCCCCeEECCCCcHHHHHHHHHHc
Confidence 0 00 0 0112346677899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..||++
T Consensus 87 ~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 87 GIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred CCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 9999999998 89999999999985
No 61
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.34 E-value=1.2e-11 Score=106.05 Aligned_cols=129 Identities=21% Similarity=0.321 Sum_probs=89.8
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+.+. +++||+|++|+++|+|+ ..|++.+...........
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~--~~~~V~d~~~~~~G~i~-------------------~~~l~~~~~~~~~~~~~~-- 59 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKI--SGVPVVDNEGRVVGIVS-------------------EGDLIRKIYKGKGLFYVT-- 59 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCC--CccceECCCCCEEEEEe-------------------HHHHHHHHhccCCccccc--
Confidence 7889999999999999999988 99999999999999954 555544321100000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
..... . + .. + ....+....++.++|.++++.+.+++++.+++..|.++
T Consensus 60 --------~~~~~-~-~----------------~~-~-----~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~ 107 (132)
T cd04636 60 --------LLYSV-I-F----------------LD-E-----SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKK 107 (132)
T ss_pred --------ccccc-c-c----------------cc-h-----HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHC
Confidence 00000 0 0 00 0 00000001124567778899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..|+++
T Consensus 108 ~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 108 NIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred CCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 9999999998 99999999999986
No 62
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.5e-11 Score=101.67 Aligned_cols=106 Identities=26% Similarity=0.320 Sum_probs=86.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++..+.++.+|.+.|.+.+. +.+||+|+ |+++|+ ++..|++.....+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~dl~~~~~~~--------- 52 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGH--TALPVVEG-GRVVGI-------------------ISRRDVEKALRHG--------- 52 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCC--CeeeEeeC-CEEEEE-------------------EEHHHHHHHHhcc---------
Confidence 7889999999999999998888 99999998 999999 5667765422100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.. ..++.++|..+++++.+++++.+++++|.++
T Consensus 53 ----------------~~-------------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 85 (110)
T cd04595 53 ----------------LG-------------------------------HAPVKDYMSTDVVTVPPDTPLSEVQELMVEH 85 (110)
T ss_pred ----------------cc-------------------------------cCcHHHHhcCCCEEECCCCcHHHHHHHHHHc
Confidence 00 0012345677899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+| +|+++|+||+.||++
T Consensus 86 ~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 86 DIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred CCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 999999999 689999999999975
No 63
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.34 E-value=1.3e-11 Score=101.64 Aligned_cols=108 Identities=23% Similarity=0.324 Sum_probs=88.0
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.++++.|.+.+. +.+||+|+ |+++|+ ++..|+......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~dl~~~~~~~--------- 51 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERH--RGYPVVDD-GRLVGI-------------------VTLADIRRVPAEG--------- 51 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCC--CcceEeeC-CeEEEE-------------------EEHHHHHHHHhcC---------
Confidence 7789999999999999999988 99999998 999999 6677765421100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. .. ...+.+.|..++.++.+++++.+++++|.++
T Consensus 52 ---~------------~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 85 (111)
T cd04612 52 ---R------------EA-------------------------------TVLVGDVMTRDPVTASPDETLRDALKRMAER 85 (111)
T ss_pred ---c------------cc-------------------------------ccCHHHhccCCCeEECCCCCHHHHHHHHHhC
Confidence 0 00 0002245677899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..||++
T Consensus 86 ~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 86 DIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred CCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 9999999998899999999999986
No 64
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.4e-11 Score=100.98 Aligned_cols=103 Identities=26% Similarity=0.392 Sum_probs=85.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++..+.++.++++.|.+.+. +.+||+|+ ++++|+ ++..|++..- ..
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~d~-~~~~g~-------------------v~~~~l~~~~-----~~----- 51 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGH--DGFPVVDN-GKVVGI-------------------VSARDLLGKD-----PD----- 51 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCC--CeeeEeEC-CEEEEE-------------------EEHHHhhccC-----cc-----
Confidence 7889999999999999988888 89999997 899999 5555654310 00
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.++.++|...+.++.+++++.++++.|.++
T Consensus 52 --------------------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 81 (107)
T cd04610 52 --------------------------------------------------ETVEEIMSKDLVVAVPEMDIMDAARVMFRT 81 (107)
T ss_pred --------------------------------------------------ccHHHhCCCCCeEECCCCCHHHHHHHHHHh
Confidence 001234566789999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+|+..||++
T Consensus 82 ~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 82 GISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred CCCeEeEECCCCeEEEEEEHHHhhc
Confidence 9999999999899999999999986
No 65
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.33 E-value=2.6e-11 Score=129.15 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=127.8
Q ss_pred CCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHc
Q 015178 103 QDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 103 ~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~ 181 (412)
..+|+++|... ++++++++++.+|+++|. ++++++||+++ +++.+|+||..|+.+++.+.
T Consensus 67 ~~~V~dim~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~l~Givt~~di~~~~~~~ 127 (546)
T PRK14869 67 KPQVRDLEIDK---PVTVSPDTSLKEAWNLMDENNVKTLPVVDE----------------EGKLLGLVSLSDLARAYMDI 127 (546)
T ss_pred CCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEEEEEEHHHHHHHHHhh
Confidence 46799999855 899999999999999999 89999999863 35789999999999976642
Q ss_pred cC--cCCCC---------------C------CCCccc-----------ccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCC
Q 015178 182 IG--LLSPT---------------P------NQPINS-----------LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQ 227 (412)
Q Consensus 182 ~~--~l~~l---------------~------~~~i~~-----------L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~ 227 (412)
.. .+... . ...... ++.+.++.++.+..... ....+.++++
T Consensus 128 ~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~-- 202 (546)
T PRK14869 128 LDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGV-- 202 (546)
T ss_pred cchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCC--
Confidence 11 01100 0 000000 11233332555533332 3445777888
Q ss_pred ceeEEEcCCC------------cEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhH
Q 015178 228 TSVALVDEEG------------RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVG 295 (412)
Q Consensus 228 s~vpVVd~~g------------~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 295 (412)
+++.|..... .+.++ .|..|.....
T Consensus 203 ~~lIlt~g~~~~~~v~~la~~~~i~ii-------------------~t~~dt~~t~------------------------ 239 (546)
T PRK14869 203 RLLIITGGAPVSEDVLELAKENGVTVI-------------------STPYDTFTTA------------------------ 239 (546)
T ss_pred CEEEECCCCCCCHHHHHHHHhCCCeEE-------------------EecccHHHHH------------------------
Confidence 8887775432 12222 1111211100
Q ss_pred HHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCC
Q 015178 296 FLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEED 374 (412)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~ 374 (412)
..+ ....++.++|+ ++++++++++++.++.++|.+++++++||||++
T Consensus 240 --~~l------------------------------~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~ 287 (546)
T PRK14869 240 --RLI------------------------------NQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED 287 (546)
T ss_pred --HHh------------------------------hcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC
Confidence 000 01234678898 899999999999999999999999999999999
Q ss_pred CcEEEEEehHHHHHHHH
Q 015178 375 CTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 375 ~~lvGIVT~~DIL~~l~ 391 (412)
|+++|+||+.|+++...
T Consensus 288 g~lvGiit~~dl~~~~~ 304 (546)
T PRK14869 288 GKVVGVISRYHLLSPVR 304 (546)
T ss_pred CCEEEEEEHHHhhcccc
Confidence 99999999999998654
No 66
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.33 E-value=1.2e-11 Score=103.26 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=83.2
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
+.++.+++++.+|++.|.++++ +.+||+|+ +|+++|+ ++..|++.....
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~--~~~~V~d~~~~~~~~~G~-------------------v~~~dl~~~~~~------- 55 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGF--SGIPVTEDGKSGGKLLGI-------------------VTSRDIDFLTDS------- 55 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCC--CceEEeeCCCcCCEEEEE-------------------EEhHHhhhhhcc-------
Confidence 6788999999999999999988 99999997 7899999 445555421000
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC--CCcHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP--WSSLMAVIM 358 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~--~~sl~~v~~ 358 (412)
. .++.++|..+..++.+ ++++.++++
T Consensus 56 -----------------------------------~-----------------~~v~~~~~~~~~~~~~~~~~~l~~~l~ 83 (114)
T cd04602 56 -----------------------------------E-----------------TPLSEVMTPREVLVVAPTGITLEEANE 83 (114)
T ss_pred -----------------------------------C-----------------CCHHHhcCCCceEEECCCCCCHHHHHH
Confidence 0 0012345555666655 999999999
Q ss_pred HHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 359 QALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 359 ~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
.|.+++.+++||||++|+++|+||++||++
T Consensus 84 ~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 84 ILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred HHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 999999999999998899999999999875
No 67
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.33 E-value=9.9e-12 Score=130.63 Aligned_cols=113 Identities=19% Similarity=0.077 Sum_probs=93.8
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
|.++ ++++++++|+.+|+++|.++++ +++||+|+ +|+++|+ +|..|++.....
T Consensus 106 mi~d-pvtV~pd~tV~dA~~lm~~~~~--~~lpVvD~~~~~GklvGI-------------------VT~~DL~~v~~~-- 161 (505)
T PLN02274 106 FVSD-PVVKSPSSTISSLDELKASRGF--SSVCVTETGTMGSKLLGY-------------------VTKRDWDFVNDR-- 161 (505)
T ss_pred ccCC-CeeeCCCCcHHHHHHHHHhcCC--ceEEEEeCCCcCCeEEEE-------------------EEHHHHhhcccc--
Confidence 5567 9999999999999999999999 99999997 4899999 556666431000
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC--ceEeCCCCcH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE--AILCHPWSSL 353 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~--vvt~~~~~sl 353 (412)
..++.++|+++ ++++.+++++
T Consensus 162 ---------------------------------------------------------~~~V~eIMt~~~~lvtv~~~~sL 184 (505)
T PLN02274 162 ---------------------------------------------------------ETKLSEVMTSDDDLVTAPAGIDL 184 (505)
T ss_pred ---------------------------------------------------------CCcHHHHhccCCCcEEECCCCCH
Confidence 00123466655 8999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
.++++.|.+++++++||||++++++|+||++||++.+..
T Consensus 185 ~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 185 EEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 999999999999999999999999999999999988763
No 68
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.33 E-value=9.1e-12 Score=133.44 Aligned_cols=124 Identities=19% Similarity=0.185 Sum_probs=99.8
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
.++++ +|+++ +.++++++++.++++.|.+++. +.+||+|++|+++|+ ++.+|+++.
T Consensus 447 ~~V~d--im~~~-~~~v~~~~tl~ea~~~l~~~~~--~~~~VvD~~g~lvGi-------------------Vt~~dL~~~ 502 (574)
T PRK01862 447 TQMRE--LIQPA-QTVVPPTASVADMTRVFLEYPV--KYLYVVDDDGRFRGA-------------------VALKDITSD 502 (574)
T ss_pred CcHHH--HhcCC-CceeCCCCCHHHHHHHHHhCCC--ceEEEEcCCCeEEEE-------------------EEHHHHHHH
Confidence 34554 68888 8899999999999999999988 999999999999999 566776542
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
... +.. .. +.++.++|++++.+++++
T Consensus 503 l~~----------------------------~~~-----------~~---------------~~~v~dim~~~~~~v~~d 528 (574)
T PRK01862 503 LLD----------------------------KRD-----------TT---------------DKTAADYAHTPFPLLTPD 528 (574)
T ss_pred hhc----------------------------ccc-----------cc---------------cchHHHhccCCCeeECCC
Confidence 100 000 00 011345788889999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCC--CcEEEEEehHHHHHHHHH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEED--CTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~--~~lvGIVT~~DIL~~l~~ 392 (412)
+++.+++++|.+++.+++||||++ ++++|+||++|+++++.+
T Consensus 529 ~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 529 MPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999999987 489999999999999865
No 69
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.33 E-value=1.2e-11 Score=123.27 Aligned_cols=123 Identities=17% Similarity=0.185 Sum_probs=101.8
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
..++|+|+|...++++++++ ++|+.+|++.|.++++..+||+|. +++++|+||..|+
T Consensus 200 ~~~~V~dim~~~~~~~~v~~-~~sl~~a~~~~~~~~~~~~vVvd~----------------------~g~lvGivt~~Dl 256 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSK-TASLRDALLEITRKNLGMTVICDD----------------------NMKIEGIFTDGDL 256 (326)
T ss_pred ccCcHHHHhCCCCCCeEECC-CCCHHHHHHHHHhcCCCeEEEEcC----------------------CCcEEEEEecHHH
Confidence 45679999963238999999 999999999999999988888885 3689999999999
Q ss_pred HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178 86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS 164 (412)
Q Consensus 86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~ 164 (412)
.+.+..... ....+|+++|... ++++.+++++.+|++.|. ++++++||+++ ++
T Consensus 257 ~~~~~~~~~------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----------------~~ 310 (326)
T PRK10892 257 RRVFDMGID------LRQASIADVMTPG---GIRVRPGILAVDALNLMQSRHITSVLVADG-----------------DH 310 (326)
T ss_pred HHHHhcCCC------cccCCHHHhcCCC---CEEECCCCCHHHHHHHHHHCCCcEEEEeeC-----------------CE
Confidence 875433111 1236799999855 889999999999999999 99999999742 46
Q ss_pred eeeeecHHHHHHH
Q 015178 165 EYCWLTQEDLIRY 177 (412)
Q Consensus 165 ~v~iITq~DIv~~ 177 (412)
++|+||+.||++.
T Consensus 311 lvGiit~~dil~~ 323 (326)
T PRK10892 311 LLGVLHMHDLLRA 323 (326)
T ss_pred EEEEEEhHHhHhc
Confidence 8999999999874
No 70
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.32 E-value=1.9e-11 Score=127.21 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=99.8
Q ss_pred CCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHh-----cCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178 189 PNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQ-----SHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLS 263 (412)
Q Consensus 189 ~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~-----~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls 263 (412)
...++++ +|+++ ++++.++.++.+|++.|++ +++ ..++|+|++++++|+ ++
T Consensus 129 ~e~tvg~--iMt~~-~~~v~~~~tv~eal~~l~~~~~~~~~~--~~v~Vvd~~~~l~Gv-------------------V~ 184 (449)
T TIGR00400 129 SDDSAGR--IMTIE-YVELKEDYTVGKALDYIRRVAKTKEDI--YTLYVTNESKHLKGV-------------------LS 184 (449)
T ss_pred CcchHHH--hCcCc-eEEECCCCcHHHHHHHHHhcCCCccce--eEEEEECCCCeEEEE-------------------EE
Confidence 3456665 68888 9999999999999999986 455 789999999999999 55
Q ss_pred HhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC
Q 015178 264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE 343 (412)
Q Consensus 264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~ 343 (412)
.+|++..- . +.+++++|+++
T Consensus 185 l~dLl~a~-----~-------------------------------------------------------~~~v~~im~~~ 204 (449)
T TIGR00400 185 IRDLILAK-----P-------------------------------------------------------EEILSSIMRSS 204 (449)
T ss_pred HHHHhcCC-----C-------------------------------------------------------CCcHHHHhCCC
Confidence 66654310 0 00134567788
Q ss_pred ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
++++++++++.++++.|.+++.+.+||||++|+++|+||..|+++.+.++
T Consensus 205 ~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~ 254 (449)
T TIGR00400 205 VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE 254 (449)
T ss_pred CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999998764
No 71
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.9e-11 Score=101.19 Aligned_cols=110 Identities=17% Similarity=0.248 Sum_probs=87.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.+++. +.+||+|+ |+++|+ ++..|++...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------i~~~~l~~~~------------ 48 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDV--GALPVCEN-DRLVGI-------------------VTDRDIVVRA------------ 48 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CEEEEeeC-CEEEEE-------------------EEhHHHHHHH------------
Confidence 7889999999999999999988 99999998 999999 5556654210
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+ ... .. .. ..++.++|...+.++.+++++.++++.|.++
T Consensus 49 ----~------------~~~-------~~---~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 87 (113)
T cd04622 49 ----V------------AEG-------RD---PD---------------TTTVGDVMTRGVVTVTEDDDVDEAARLMREH 87 (113)
T ss_pred ----h------------hcc-------CC---cc---------------cCCHHHhccCCccEECCCCCHHHHHHHHHHc
Confidence 0 000 00 00 0013456777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|+||..|+++
T Consensus 88 ~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 88 QVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCCeeeEECCCCcEEEEEEHHHhhc
Confidence 9999999998899999999999976
No 72
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=1.9e-11 Score=101.22 Aligned_cols=110 Identities=21% Similarity=0.360 Sum_probs=85.7
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.+++. +.++|.++ |+++|+ ++..|++......
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~v~~~-~~~~G~-------------------v~~~dl~~~~~~~--------- 51 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDL--GSLVVMER-GELVGL-------------------LTFREVLQAMAQH--------- 51 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCC--CeEEEeeC-CEEEEE-------------------EEHHHHHHHHHhc---------
Confidence 7889999999999999988877 88877754 899999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+.. . ...++.++|..++.++.+++++.+++++|.++
T Consensus 52 --------~~~-~-----------------------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~ 87 (112)
T cd04625 52 --------GAG-V-----------------------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVER 87 (112)
T ss_pred --------CCc-h-----------------------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHc
Confidence 000 0 00113456777889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+.+++||+|+ |+++|+||.+||+++
T Consensus 88 ~~~~l~Vv~~-~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 88 HLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred CCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence 9999999985 899999999999863
No 73
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.3e-11 Score=99.30 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=83.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.++++.|.+++. +.+||+| +|+++|+ ++..|++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d-~~~~~Gi-------------------v~~~~l~~~~~~---------- 50 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRI--GGLPVVE-DGKLVGI-------------------ITSRDVRRAHPN---------- 50 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CEEEEEE-CCEEEEE-------------------EehHHhhccccc----------
Confidence 6789999999999999999988 9999998 5899999 556665441100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
..+.++|..++.++.+++++.+++++|.++
T Consensus 51 --------------------------------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 80 (105)
T cd04599 51 --------------------------------------------------RLVADAMTREVVTISPEASLLEAKRLMEEK 80 (105)
T ss_pred --------------------------------------------------CCHHHHccCCCEEECCCCCHHHHHHHHHHc
Confidence 001224556789999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+..++||+|+ |+++|+||..||+.
T Consensus 81 ~~~~~~Vv~~-~~~~G~it~~~l~~ 104 (105)
T cd04599 81 KIERLPVLRE-RKLVGIITKGTIAL 104 (105)
T ss_pred CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence 9999999998 89999999999973
No 74
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.31 E-value=3.1e-11 Score=99.90 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=86.7
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.++.++.+|++.|.+++. +.++|+|+ |+++|+ ++..|++.....+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~~~--------- 51 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGA--DALLVRDG-DPRLGI-------------------VTRTDLLDAVLLD--------- 51 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CEEEEecC-CeEEEE-------------------EEHHHHHHHHHcC---------
Confidence 6788999999999999999988 99999998 899999 5666765421000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
... ...++.++|..+++++.+++++.++++.|.++
T Consensus 52 --------------------------------~~~-------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~ 86 (111)
T cd04589 52 --------------------------------GLP-------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRH 86 (111)
T ss_pred --------------------------------CCC-------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHh
Confidence 000 00113356777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..|+++
T Consensus 87 ~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 87 RIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred CccEEEEeeC-CEEEEEEEhHHhhc
Confidence 9999999986 89999999999975
No 75
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3e-11 Score=101.62 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=89.0
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.++.++.+|++.|.++++ +++||+|+ |+++|+ ++..|++.........+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~~~~~~~----- 55 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKF--HHLLVVED-NELVGV-------------------ISDRDYLKAISPFLGTA----- 55 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCC--CEEEEEeC-CeEEEE-------------------EEHHHHHHHHHHHhccc-----
Confidence 7889999999999999999999 99999997 899999 55666654321000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
+ ....+.... ..++.++|..+++++.+++++.++++.|.++
T Consensus 56 ---~------~~~~~~~~~------------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (122)
T cd04637 56 ---G------ETEKDLATL------------------------------NRRAHQIMTRDPITVSPDTPVDEASKLLLEN 96 (122)
T ss_pred ---c------chHHHHHHH------------------------------HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHc
Confidence 0 000000000 0012345777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|++|+.|+++
T Consensus 97 ~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 97 SISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred CCCeEeEECCCCCEEEEEEHHHhhh
Confidence 9999999998899999999999986
No 76
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.31 E-value=2.1e-11 Score=100.21 Aligned_cols=100 Identities=15% Similarity=0.144 Sum_probs=82.4
Q ss_pred EEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHH
Q 015178 205 FAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLV 284 (412)
Q Consensus 205 ~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~ 284 (412)
+++.++.++.+|++.|.+.++ +.+||+|+ |+++|+ ++..|++....
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~--~~~~V~d~-~~~~G~-------------------v~~~~l~~~~~------------ 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDL--LSLPVVDY-NKFLGA-------------------VYLKDIENATY------------ 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEE-------------------EEHHHHhhhcc------------
Confidence 457899999999999999988 99999998 999999 55666543100
Q ss_pred HHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcC
Q 015178 285 KQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARR 364 (412)
Q Consensus 285 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ 364 (412)
. ++.++|..+++++.+++++.+++..|.+++
T Consensus 50 -------------~------------------------------------~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~ 80 (104)
T cd04594 50 -------------G------------------------------------DVVDYIVRGIPYVRLTSTAEEAWEVMMKNK 80 (104)
T ss_pred -------------c------------------------------------chhhhhhcCCcEEcCCCCHHHHHHHHHHcC
Confidence 0 011235566889999999999999999999
Q ss_pred CcEEEEEeCCCcEEEEEehHHHHH
Q 015178 365 VSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 365 ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
.+++||+| +|+++|+||+.||++
T Consensus 81 ~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 81 TRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred cceEEEEE-CCEEEEEEEHHHhhc
Confidence 99999998 489999999999975
No 77
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.3e-11 Score=101.36 Aligned_cols=109 Identities=9% Similarity=0.122 Sum_probs=90.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.+++..++||+|. +++++|+++..|+.+...+
T Consensus 2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~dl~~~~~~------- 51 (111)
T cd04603 2 QTVSVNC-ENPLREAIKMINELGARAVVVVDE----------------------ENKVLGQVTLSDLLEIGPN------- 51 (111)
T ss_pred ceEEeCC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHhhccc-------
Confidence 3678889 999999999999999999999995 3689999999999873211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
.....++.++|... +.++.+++++.+|++.|. ++.+++||+++ +++++|+||+.|++++
T Consensus 52 -~~~~~~v~~~~~~~---~~~v~~~~~l~~al~~m~~~~~~~lpVvd~----------------~~~~~Giit~~di~~~ 111 (111)
T cd04603 52 -DYETLKVCEVYIVP---VPIVYCDSKVTDLLRIFRETEPPVVAVVDK----------------EGKLVGTIYERELLRF 111 (111)
T ss_pred -cccccChhheeecC---CcEECCCCcHHHHHHHHHHcCCCeEEEEcC----------------CCeEEEEEEhHHhhcC
Confidence 11235788999644 789999999999999999 89999999863 2568999999999874
No 78
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.31 E-value=1.5e-11 Score=128.28 Aligned_cols=113 Identities=21% Similarity=0.187 Sum_probs=94.6
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++ ++++.+++++.+|+++|.++++ +.+||+|+ ++++|+ +|.+|+... +.
T Consensus 93 im~~~-pvtv~p~~tI~eA~~lm~~~~~--~~~vVvD~-gklvGI-------------------VT~rDL~~~-~~---- 144 (475)
T TIGR01303 93 LVLDT-PITLAPHDTVSDAMALIHKRAH--GAAVVILE-DRPVGL-------------------VTDSDLLGV-DR---- 144 (475)
T ss_pred ccccC-CeEECCCCCHHHHHHHHHhcCC--eEEEEEEC-CEEEEE-------------------EEHHHhhcC-CC----
Confidence 46677 8999999999999999999998 99999985 799999 556665321 00
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
..++.++|+.+++++.+++++.+++
T Consensus 145 -------------------------------------------------------~~~V~dIMt~~litv~~~~sL~eAl 169 (475)
T TIGR01303 145 -------------------------------------------------------FTQVRDIMSTDLVTAPADTEPRKAF 169 (475)
T ss_pred -------------------------------------------------------CCCHHHHccCCceEeCCCCcHHHHH
Confidence 0012356888999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
++|.+++++++||||++|+++|+||++||+++....
T Consensus 170 ~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 170 DLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT 205 (475)
T ss_pred HHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence 999999999999999889999999999999976543
No 79
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.30 E-value=2.2e-11 Score=104.13 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=90.8
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ +.|+.+|++.|.++++..+||+|. +++++|+++..|++..+.+...
T Consensus 2 ~~~~~v~~-~~~v~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Gii~~~dl~~~~~~~~~--- 55 (124)
T cd04608 2 KAPVTVLP-TVTCAEAIEILKEKGFDQLPVVDE----------------------SGKILGMVTLGNLLSSLSSGKV--- 55 (124)
T ss_pred CCCEEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHHHHHHhcc---
Confidence 45788999 999999999999999999999985 3579999999999987654221
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh----------cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL----------GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC 167 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~----------~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (412)
....+|+++|... +.++.+++++.++.++|. .+.++++|++ ++++++|
T Consensus 56 ---~~~~~v~~im~~~---~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----------------~~~~~~G 113 (124)
T cd04608 56 ---QPSDPVSKALYKQ---FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE----------------KQEKPIG 113 (124)
T ss_pred ---CCCCcHHHHhhcc---ceecCCCCCHHHHHhhcccCCceEEEeccccccccccc----------------cccceEE
Confidence 1246899999865 889999999999999653 2445555443 3368999
Q ss_pred eecHHHHHHHH
Q 015178 168 WLTQEDLIRYF 178 (412)
Q Consensus 168 iITq~DIv~~l 178 (412)
|||..|+++++
T Consensus 114 ivt~~Dl~~~~ 124 (124)
T cd04608 114 IVTKIDLLSYI 124 (124)
T ss_pred EEehhHhhhhC
Confidence 99999999874
No 80
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.30 E-value=2.5e-11 Score=127.56 Aligned_cols=113 Identities=22% Similarity=0.257 Sum_probs=95.2
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|..+ ++++.+++++.+|+++|.++++ +.+||+|++++++|+ ++.+|++...+.
T Consensus 92 im~~~-~v~i~~~~tv~ea~~~m~~~~~--~~lpVvd~~g~lvGi-------------------Vt~~DL~~~~~~---- 145 (486)
T PRK05567 92 GVVTD-PVTVTPDTTLAEALALMARYGI--SGVPVVDENGKLVGI-------------------ITNRDVRFETDL---- 145 (486)
T ss_pred cccCC-CeEeCCCCCHHHHHHHHHHhCC--CEEEEEccCCEEEEE-------------------EEHHHhhhcccC----
Confidence 46677 9999999999999999999999 999999999999999 556666431000
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAV 356 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v 356 (412)
...+.++|+ ++++++.+++++.++
T Consensus 146 -------------------------------------------------------~~~V~dim~~~~~v~v~~~~sl~ea 170 (486)
T PRK05567 146 -------------------------------------------------------SQPVSEVMTKERLVTVPEGTTLEEA 170 (486)
T ss_pred -------------------------------------------------------CCcHHHHcCCCCCEEECCCCCHHHH
Confidence 001234566 689999999999999
Q ss_pred HHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 357 IMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 357 ~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+++|.+++++.+||+|++|+++|+||+.||++.+.
T Consensus 171 l~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 171 LELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEE 205 (486)
T ss_pred HHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhh
Confidence 99999999999999999999999999999998863
No 81
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.1e-11 Score=102.25 Aligned_cols=118 Identities=25% Similarity=0.334 Sum_probs=87.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.++++ +++||+|+ |+++|+ ++..|++.........+..
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~--~~i~V~~~-~~~~G~-------------------v~~~~l~~~~~~~~~~~~~--- 57 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDI--SRLPVIEG-GKLVGI-------------------VTEKDIADALRSFRPLVRD--- 57 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCC--CeeEEEEC-CEEEEE-------------------EchHHHHHhhhhhhhcccc---
Confidence 7789999999999999999988 99999997 999999 4555555422100000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
..+ . . .....++.++|..++.++.+++++.+++++|.++
T Consensus 58 --~~~-----~---~-------------------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 96 (121)
T cd04633 58 --RHQ-----E---R-------------------------------RIRNLPVSDIMTRPVITIEPDTSVSDVASLMLEN 96 (121)
T ss_pred --hhh-----h---h-------------------------------hhhccCHHHHccCCceEECCCCcHHHHHHHHHHc
Confidence 000 0 0 0000123446777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..|+++
T Consensus 97 ~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 97 NIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred CCCcccEEEC-CEEEEEEEHHHhhc
Confidence 9999999998 89999999999986
No 82
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.29 E-value=8.4e-11 Score=120.97 Aligned_cols=160 Identities=11% Similarity=0.095 Sum_probs=123.6
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|..++|+|+|....++++++. ++|++++++.+.+++.+++||++.+ .++++||++..
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~-~~~~~e~~~~~~~~~~sR~PV~~~~---------------------~d~ivGiv~~k 244 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDI-ETSFSEIIPKIIENGYSRIPVYKET---------------------IDNITGVLYIK 244 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEEC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCceEEEEEHH
Confidence 4678999999976568999999 9999999999999999999999853 35799999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
|++.++.+ + ..+++++|. +++.|.+++++.++++.|. ++.|..+|+++ .
T Consensus 245 Dll~~~~~-~---------~~~l~~~~~----~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE----------------~ 294 (408)
T TIGR03520 245 DLLPHLNK-K---------NFDWQSLLR----EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE----------------Y 294 (408)
T ss_pred HHHhHhcc-C---------CCCHHHHcC----CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC----------------C
Confidence 99976532 0 134677775 2689999999999999999 77888888753 2
Q ss_pred CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI 220 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m 220 (412)
|+..||||.+||++.+.... ++... ....+.. .... .+.+....++.+..+.|
T Consensus 295 G~~~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~-~~~v~G~~~l~~l~~~l 348 (408)
T TIGR03520 295 GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDN-NYVFEGKTSLKDFYKIL 348 (408)
T ss_pred CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCC-eEEEEeccCHHHHHHHh
Confidence 56889999999999885321 22211 1111221 2233 78899999999998888
No 83
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=2e-11 Score=127.09 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=94.1
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
.+.++ ++++.+++++.+|+++|.++++ +++||+|++ ++++|+ ++.+|++.....
T Consensus 85 ~~~~~-~vtl~~~~tv~eal~~m~~~~~--s~lpVvd~~~~~~~lvGI-------------------Vt~rDL~~~~~~- 141 (450)
T TIGR01302 85 GIISD-PVTISPETTVADVLELMERKGI--SGIPVVEDGDMTGKLVGI-------------------ITKRDIRFVKDK- 141 (450)
T ss_pred ceecC-ceEeCCCCCHHHHHHHHHHcCC--CEEEEEeCCCCCCeEEEE-------------------EEHHHHhhhhcC-
Confidence 35567 9999999999999999999999 999999987 799999 556666431000
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcH
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSL 353 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl 353 (412)
..++.++|+ .+++++.+++++
T Consensus 142 ----------------------------------------------------------~~~V~dvm~~~~~~~V~~~~sl 163 (450)
T TIGR01302 142 ----------------------------------------------------------GKPVSEVMTREEVITVPEGIDL 163 (450)
T ss_pred ----------------------------------------------------------CCCHHHhhCCCCCEEECCCCcH
Confidence 001234566 489999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
.++++.|.+++++++||||++|+++|+||+.||++.+
T Consensus 164 ~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 164 EEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred HHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 9999999999999999999999999999999999986
No 84
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.29 E-value=4.4e-11 Score=98.94 Aligned_cols=109 Identities=24% Similarity=0.314 Sum_probs=86.8
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++++++++.+|++.|.+++. +.+||+|++ +++|+ ++..|++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~~~G~-------------------v~~~dl~~~~~~~--------- 51 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNI--GRLIVVDNE-KPVGI-------------------ITERDLVKKVVSR--------- 51 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCC--CEEEEEECC-EEEEE-------------------EEHHHHHHHHhhc---------
Confidence 7789999999999999999988 999999975 99999 6677776532000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. .. . ...++.++|..++.++.+++++.+++++|.++
T Consensus 52 --------------~-~~--------------~---------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 87 (112)
T cd04802 52 --------------N-LK--------------P---------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKH 87 (112)
T ss_pred --------------c-CC--------------c---------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHc
Confidence 0 00 0 00113456777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||||++ +++|+||+.|+++
T Consensus 88 ~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 88 GIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 99999999975 9999999999975
No 85
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.28 E-value=4.5e-11 Score=122.96 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=101.6
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|++ + +++++.++++.++++.|.+++. +.+||.+++ ++++|+ ++.+|
T Consensus 190 ~~~v~d--iMtpr~~-v~~l~~~~~~~e~~~~~~~~~~--sR~PV~~~~~d~ivGi-------------------v~~kD 245 (408)
T TIGR03520 190 NTDTKQ--VMRPRLD-IFALDIETSFSEIIPKIIENGY--SRIPVYKETIDNITGV-------------------LYIKD 245 (408)
T ss_pred CCEeee--eCCchHh-EEEEECCCCHHHHHHHHHhCCC--CEEEEEcCCCCceEEE-------------------EEHHH
Confidence 445665 6885 5 9999999999999999999999 999999875 589999 67888
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++.+...+ . . ...++| +++++
T Consensus 246 ll~~~~~~----~-------------~-----------------------------------------~l~~~~-~~~~~ 266 (408)
T TIGR03520 246 LLPHLNKK----N-------------F-----------------------------------------DWQSLL-REPYF 266 (408)
T ss_pred HHhHhccC----C-------------C-----------------------------------------CHHHHc-CCCeE
Confidence 87543100 0 0 011234 46789
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
+++++++.+++++|.+++.|..+|||+.|.++||||..||++.+..+....
T Consensus 267 Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 267 VPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred eCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999999999999998765543
No 86
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.28 E-value=4.4e-11 Score=117.78 Aligned_cols=127 Identities=18% Similarity=0.311 Sum_probs=101.6
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|++ + ++++.+++++.++++.+.+++. +.+||++++ ++++|+ ++.+|
T Consensus 66 ~~~V~d--iMtpr~~-i~~l~~~~sl~e~~~~i~~~~~--sr~PV~~~~~d~iiGi-------------------v~~kD 121 (292)
T PRK15094 66 DQRVRD--IMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGI-------------------LMAKD 121 (292)
T ss_pred CCEEeE--EccchHH-EEEEeCCCCHHHHHHHHHhcCC--cEEEEecCCCCcEEEE-------------------EEHHH
Confidence 456665 6876 5 9999999999999999999998 999999876 699999 67788
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++.+..... . ...+.++|+ ++++
T Consensus 122 ll~~~~~~~-----------------------------------------~---------------~~~l~~l~r-~~~~ 144 (292)
T PRK15094 122 LLPFMRSDA-----------------------------------------E---------------AFSMDKVLR-QAVV 144 (292)
T ss_pred HHhHhhccC-----------------------------------------C---------------cCCHHHHcC-CCcC
Confidence 765321000 0 000123454 4568
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
+.+++++.+++++|.+++.|.++|||+.|.++|+||+.||+..+...+...
T Consensus 145 V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 145 VPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred cCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccc
Confidence 999999999999999999999999999899999999999999999766543
No 87
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=5.9e-11 Score=99.17 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=92.3
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
.+.+++. ++|+.+|++.|.+++...+||+|.+ ++++|+++..|+.+.+....
T Consensus 2 ~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~dl~~~~~~~~----- 53 (114)
T cd04619 2 RLAKIDV-NATLQRAAKILGEPGIDLVVVCDPH----------------------GKLAGVLTKTDVVRQMGRCG----- 53 (114)
T ss_pred ceEEECC-CCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEehHHHHHHHhhcC-----
Confidence 3677888 9999999999999999999999963 57999999999998765311
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
......++.++|... +.++.+++++.+|++.|. ++.+++||+++ +++++|+||+.|+++
T Consensus 54 ~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 54 GPGCTAPVENVMTRA---VVSCRPGDLLHDVWQVMKQRGLKNIPVVDE----------------NARPLGVLNARDALK 113 (114)
T ss_pred CCcccCCHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeEEEECC----------------CCcEEEEEEhHhhcc
Confidence 012246799999755 889999999999999999 89999999863 256899999999975
No 88
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=4.9e-11 Score=100.30 Aligned_cols=115 Identities=18% Similarity=0.177 Sum_probs=92.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ +.++.+|++.|.++++.++||+|. +++++|+|+..||.+.+.....
T Consensus 2 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Givt~~dl~~~~~~~~~---- 54 (118)
T cd04617 2 PPVVVRE-NTSVYDAIVTLFLEDVGSLFVVDE----------------------DGDLVGVVSRKDLLKASIGGAD---- 54 (118)
T ss_pred CCEEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCCEEEEEEHHHHHHHHHcCCC----
Confidence 5688999 999999999999999999999995 3579999999999987653111
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....+++++|... ..+.++++++++.++++.|. ++++++||+++.. ..++++|+||++|+++
T Consensus 55 --~~~~~~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~-------------~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 55 --LQKVPVGVIMTRM-PNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD-------------EGLEVIGRITKTNITK 117 (118)
T ss_pred --ccCCCHHHHhCCC-CCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC-------------ccceEEEEEEhhheec
Confidence 1135688888631 12789999999999999999 8999999986421 0157899999999975
No 89
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.27 E-value=4.3e-11 Score=125.65 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=93.4
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
.+..+ ++++++++++.+|+++|.++++ +++||+|++ |+++|+ ++..|++. ...
T Consensus 101 g~i~d-pvtv~pd~tv~eA~~lm~~~~~--s~vpVvd~~~~~gkLvGI-------------------Vt~~DL~~-~~~- 156 (495)
T PTZ00314 101 GFIMD-PYVLSPNHTVADVLEIKEKKGF--SSILITVDGKVGGKLLGI-------------------VTSRDIDF-VKD- 156 (495)
T ss_pred ccccC-CeecCCCCCHHHHHHHHHHcCC--cEEEEEeCCccCCeEEEE-------------------EEHHHHhh-ccc-
Confidence 34566 8999999999999999999999 999999974 799999 55666642 100
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCc
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSS 352 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~s 352 (412)
. ..++.++|++ ++++++++++
T Consensus 157 --~-------------------------------------------------------~~~V~diMt~~~~lvtv~~~~s 179 (495)
T PTZ00314 157 --K-------------------------------------------------------STPVSEVMTPREKLVVGNTPIS 179 (495)
T ss_pred --C-------------------------------------------------------CCCHHHhhCCcCCceEeCCCCC
Confidence 0 0012346766 8999999999
Q ss_pred HHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 353 LMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 353 l~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+.+++++|.+++++++||||++++++|+||++||++...
T Consensus 180 l~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 180 LEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG 218 (495)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence 999999999999999999999999999999999998754
No 90
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.26 E-value=4.8e-11 Score=97.96 Aligned_cols=107 Identities=21% Similarity=0.329 Sum_probs=83.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +.+||+|+ |+++|+ ++..|++.......
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~V~~~-~~~~G~-------------------v~~~dl~~~~~~~~-------- 52 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGV--SQLPVVDD-GRVVGS-------------------IDESDLLDALIEGK-------- 52 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCC--ceeeEeeC-CeeEEE-------------------EeHHHHHHHHhccc--------
Confidence 7789999999999999999998 99999998 999999 66777765321000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. ++ ..++.++|..+++++.+++++.+++++|.+
T Consensus 53 -----------------~------------------~~-----------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~- 85 (110)
T cd04609 53 -----------------A------------------KF-----------SLPVREVMGEPLPTVDPDAPIEELSELLDR- 85 (110)
T ss_pred -----------------c------------------cc-----------CcCHHHHhcCCCceeCCCCcHHHHHHHHHh-
Confidence 0 00 001234567788999999999999988887
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
. +.+||||++|+++|+||++||++
T Consensus 86 ~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 86 G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred C-CceeEEecCCeEEEEEeHHHhhc
Confidence 3 45789998899999999999986
No 91
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.26 E-value=8.2e-11 Score=95.66 Aligned_cols=110 Identities=27% Similarity=0.408 Sum_probs=88.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.++++.|.+++. +.+||+|++++++|+ ++.+|++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~G~-------------------v~~~~l~~~~~~~--------- 52 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGI--SGLPVVDDDGRLVGI-------------------VTERDLLRALAEG--------- 52 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCC--ceEEEECCCCCEEEE-------------------EeHHHHHHHHHhc---------
Confidence 7788999999999999999988 999999998999999 6677776532100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
. .. + . ..+.++|..+++++.+++++.++++.|.++
T Consensus 53 ----~-----------~~------------------~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (113)
T cd02205 53 ----G-----------LD------------------P------L------VTVGDVMTRDVVTVSPDTSLEEAAELMLEH 87 (113)
T ss_pred ----c-----------CC------------------c------c------ccHHHHhcCCceecCCCcCHHHHHHHHHHc
Confidence 0 00 0 0 001234667889999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|++|+++|++|..|+++
T Consensus 88 ~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 88 GIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred CCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 9999999999999999999999975
No 92
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=9.9e-11 Score=97.55 Aligned_cols=111 Identities=16% Similarity=0.173 Sum_probs=91.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.++++..+||.+.+ .++++|+++..|+++++...+.
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~~---------------------~~~~~G~v~~~dl~~~~~~~~~---- 55 (114)
T cd04630 2 NVVTIDG-LATVAEALQLMKEHGVSSLVVEKRR---------------------ESDAYGIVTMRDILKKVVAEGR---- 55 (114)
T ss_pred CcEEECC-CCcHHHHHHHHHHcCCCEEEEEECC---------------------CCcEEEEEehHHHHHHHHhCCC----
Confidence 5788999 9999999999999999999999852 1589999999999987654211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
.....++.++|... ++++.+++++.++++.|. ++.+++||+++ ++++|+||..|+++
T Consensus 56 -~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 56 -DPDRVNVYEIMTKP---LISVSPDMDIKYCARLMERTNIRRAPVVEN-----------------NELIGIISLTDIFL 113 (114)
T ss_pred -CCCccCHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-----------------CEEEEEEEHHHhhc
Confidence 11235799999644 889999999999999999 79999999753 46889999999975
No 93
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.25 E-value=2e-10 Score=113.08 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=122.5
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
|..++|+++|....++++++. ++|++++++.+.+++.+.+||++.+ .++++|+|+..|
T Consensus 64 l~~~~V~diMtpr~~i~~l~~-~~sl~e~~~~i~~~~~sr~PV~~~~---------------------~d~iiGiv~~kD 121 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHIEGILMAKD 121 (292)
T ss_pred cCCCEEeEEccchHHEEEEeC-CCCHHHHHHHHHhcCCcEEEEecCC---------------------CCcEEEEEEHHH
Confidence 567899999974447999999 9999999999999999999999853 257999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
++.++..... ..++.++|.. .+.+.+++++.++++.|. ++.|.++|+++ .|
T Consensus 122 ll~~~~~~~~--------~~~l~~l~r~----~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe----------------~G 173 (292)
T PRK15094 122 LLPFMRSDAE--------AFSMDKVLRQ----AVVVPESKRVDRMLKEFRSQRYHMAIVIDE----------------FG 173 (292)
T ss_pred HHhHhhccCC--------cCCHHHHcCC----CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC----------------CC
Confidence 9976532110 1347788853 458999999999999999 88999999863 25
Q ss_pred CeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178 164 SEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI 220 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m 220 (412)
..+|+||.+||++.+.... ++........+.. .... .+.+...+++.+..+.+
T Consensus 174 ~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~-~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 174 GVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRH-TWTVRALASIEDFNEAF 227 (292)
T ss_pred CEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCC-eEEEEeccCHHHHHHHh
Confidence 6889999999999886532 2222111112222 2233 78899999998777776
No 94
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.25 E-value=5.5e-11 Score=118.16 Aligned_cols=121 Identities=17% Similarity=0.214 Sum_probs=102.9
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
.++|+++|..+++++++++ ++|+.+|++.|.+++...+||+|. +++++|+|+..|+.
T Consensus 196 ~~~V~~im~~~~~~~~v~~-~~sv~~a~~~~~~~~~~~~~Vvd~----------------------~g~~iG~vt~~dl~ 252 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVAL-TASVMDAMLELSRTGLGLVAVCDA----------------------QQQVQGVFTDGDLR 252 (321)
T ss_pred HhHHHHHhccCCCCcEeCC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEecHHHHH
Confidence 6789999964445999999 999999999999999999999995 36899999999998
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
+.+.... ....++.++|... +.++.+++++.+|++.|. +++.++||+++ ++++
T Consensus 253 ~~~~~~~-------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~~~l 306 (321)
T PRK11543 253 RWLVGGG-------ALTTPVNEAMTRG---GTTLQAQSRAIDAKEILMKRKITAAPVVDE----------------NGKL 306 (321)
T ss_pred HHHhCCC-------CcCCcHHHhcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCeE
Confidence 8765321 1246799999755 789999999999999999 99999999863 2468
Q ss_pred eeeecHHHHHH
Q 015178 166 YCWLTQEDLIR 176 (412)
Q Consensus 166 v~iITq~DIv~ 176 (412)
+|+||+.|+++
T Consensus 307 vGvIt~~di~~ 317 (321)
T PRK11543 307 TGAINLQDFYQ 317 (321)
T ss_pred EEEEEHHHHHh
Confidence 99999999986
No 95
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=8.9e-11 Score=102.64 Aligned_cols=140 Identities=21% Similarity=0.278 Sum_probs=89.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
++++.+++++.+|++.|.+.++ +++||+|+ |+++|+ ++.+|++.++......+.+...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~-------------------v~~~dl~~~~~~~~~~~~~~~~ 60 (143)
T cd04634 3 PITCNADDTISDAARLLRENKI--SGAPVLDG-GKLVGI-------------------VSESDILKLLVTHDPSGNLWLP 60 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCC--CcceEeEC-CeEEEE-------------------ecHHHHHHHHHhccCccccccC
Confidence 7889999999999999999998 99999998 999999 5566665433110000000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
-........+..++.+-... . ........++.++|..++.++.+++++.+++..|.++
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~-------------~---------~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~ 118 (143)
T cd04634 61 SPLELIELPLREFINWEETK-------------R---------ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH 118 (143)
T ss_pred CcceeeeccchheeehHHHH-------------H---------HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc
Confidence 00000000000000000000 0 0000001224567788899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..|+++
T Consensus 119 ~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 119 KIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 9999999998 89999999999975
No 96
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.23 E-value=1.1e-10 Score=121.84 Aligned_cols=122 Identities=22% Similarity=0.158 Sum_probs=104.0
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
..++..+++++|. ++++++++ ++|+.+|++.|.+++++++||+|. +++++|||+.
T Consensus 84 ~~l~~VKv~~iMi--~~pvtv~~-d~tv~eA~~~m~~~~~s~l~VVD~----------------------~gklvGIVT~ 138 (479)
T PRK07807 84 EVVAWVKSRDLVF--DTPVTLSP-DDTVGDALALLPKRAHGAVVVVDE----------------------EGRPVGVVTE 138 (479)
T ss_pred HHHhhcccccccc--cCCeEECC-CCCHHHHHHHHHhcCCceEEEECC----------------------CCeEEEEEeH
Confidence 4567788899985 67899999 999999999999999999999995 3689999999
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH 161 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~ 161 (412)
.|+... . ...+|+++|+.. +++++++++|.+|+++|. ++++++||+++
T Consensus 139 rDL~~~--~----------~~~~V~diMt~~---~itV~~d~sL~eAl~lM~~~~i~~LPVVD~---------------- 187 (479)
T PRK07807 139 ADCAGV--D----------RFTQVRDVMSTD---LVTLPAGTDPREAFDLLEAARVKLAPVVDA---------------- 187 (479)
T ss_pred HHHhcC--c----------cCCCHHHhccCC---ceEECCCCcHHHHHHHHHhcCCCEEEEEcC----------------
Confidence 998321 0 125799999865 899999999999999999 99999999863
Q ss_pred CCCeeeeecHHHHHHHHHH
Q 015178 162 NDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 162 ~~~~v~iITq~DIv~~l~~ 180 (412)
+++++|+||+.||++....
T Consensus 188 ~g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 188 DGRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCeEEEEEEHHHHHHHhhC
Confidence 2578999999999998764
No 97
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.23 E-value=2e-10 Score=116.87 Aligned_cols=195 Identities=20% Similarity=0.208 Sum_probs=147.3
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++.+.+ ..++-+|...|+++++.++||.|.+ .+.+.+++|..=|++|+........
T Consensus 162 ~~~~~i~p-~~s~l~~~~~l~~~~~~rvpv~d~~---------------------~~~v~~ilt~~rIl~~l~~~~~~~~ 219 (381)
T KOG1764|consen 162 PPFVSISP-ESSLLDAVLLLIKSRIHRVPVIDPE---------------------TGEVLYILTQRRILKFLWLNGRLLP 219 (381)
T ss_pred CCceeecC-cHHHHHHHHHHHhCCccceeeeccc---------------------ccceeeehhHHHHHHHHHHhhcccc
Confidence 45599999 9999999999999999999999943 2589999999999999875322222
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....+..++.++---..+.+..+..++++.+|+..|. +++..+||++. .+..+|.++..|+..
T Consensus 220 ~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~----------------~g~~v~~~s~~Dv~~ 283 (381)
T KOG1764|consen 220 LPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIMSERRISALPVVDE----------------NGKKVGNYSRFDVIH 283 (381)
T ss_pred cHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC----------------CCceecceehhhhhh
Confidence 3344556666654211234789999999999999999 99999999864 244589999999988
Q ss_pred HHHHc-cCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhH
Q 015178 177 YFLNC-IGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETV 255 (412)
Q Consensus 177 ~l~~~-~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~ 255 (412)
...+. ...+.....+......-+.+++|+++.++.++..++..|..+++ ..+.|||++|+++|+
T Consensus 284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~v--HRl~VVd~~~~l~Gv------------- 348 (381)
T KOG1764|consen 284 LAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRV--HRLWVVDEDGVLVGV------------- 348 (381)
T ss_pred hhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCc--eEEEEEcCCCcEEEE-------------
Confidence 77653 11121110011111111233459999999999999999999999 999999999999999
Q ss_pred HHhhhhcCHhhhhhhh
Q 015178 256 AAAMVTLSAGDLMAYM 271 (412)
Q Consensus 256 ~~~~~~ls~~Dl~~~~ 271 (412)
+|.+|++.++
T Consensus 349 ------vSLsDil~~l 358 (381)
T KOG1764|consen 349 ------ISLSDILSYL 358 (381)
T ss_pred ------eeHHHHHHHH
Confidence 6688888765
No 98
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.2e-10 Score=99.04 Aligned_cols=119 Identities=22% Similarity=0.313 Sum_probs=92.5
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhccc---C
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEEN---L 95 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~---l 95 (412)
+++.+++ +.|+.+|++.|.++++..+||+++ +++++|+++..|+...+..... .
T Consensus 2 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~Vv~~----------------------~~~~~G~it~~dl~~~~~~~~~~~~~ 58 (128)
T cd04632 2 DVITVRE-DDSVGKAINVLREHGISRLPVVDD----------------------NGKLTGIVTRHDIVDFVVRDRDKART 58 (128)
T ss_pred CceEeCC-CCCHHHHHHHHHHcCCCEEEEECC----------------------CCcEEEEEEHHHHHHHHhhhhhhcch
Confidence 4678888 999999999999999999999996 3689999999999876543110 0
Q ss_pred C----CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeec
Q 015178 96 L----NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLT 170 (412)
Q Consensus 96 ~----~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iIT 170 (412)
. ........++.++|... ++++.+++++.++++.|. ++.+.+||...+ ++++++|+||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~--------------~~~~~~Gvit 121 (128)
T cd04632 59 GDRSGEKERMLDLPVYDAMSSP---VITASPNDSVRDAVDRMLENDDSSVVVVTPD--------------DDTKVVGILT 121 (128)
T ss_pred hhhhhhhhhhccCcHHHHhcCC---CceECCCCcHHHHHHHHHhCCCCeEeEeccC--------------CCCcEEEEEE
Confidence 0 01112346788999744 889999999999999999 788888886421 2367899999
Q ss_pred HHHHHHH
Q 015178 171 QEDLIRY 177 (412)
Q Consensus 171 q~DIv~~ 177 (412)
..|++++
T Consensus 122 ~~di~~~ 128 (128)
T cd04632 122 KKDVLRA 128 (128)
T ss_pred hHhhhcC
Confidence 9999864
No 99
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.23 E-value=8.2e-11 Score=98.53 Aligned_cols=119 Identities=28% Similarity=0.375 Sum_probs=88.6
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++++++++.+|++.|.+.+. +.+||+|++|+++|+ ++..|++.....
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~--~~~~V~d~~~~~~G~-------------------v~~~~l~~~~~~---------- 51 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKI--RHLPVVDEEGRLVGI-------------------VTDRDLRDASPS---------- 51 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCC--CcccEECCCCcEEEE-------------------EEHHHHHHHhhh----------
Confidence 7789999999999999999988 999999999999999 556665542100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.+........ ... ...++.++|..+++++.+++++.++++.|.++
T Consensus 52 ---~~~~~~~~~~-~~~-------------------------------~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~ 96 (121)
T cd04584 52 ---PFTTLSEHEL-YLL-------------------------------LKMPVKEIMTKDVITVHPLDTVEEAALLMREH 96 (121)
T ss_pred ---hcccchhhhh-hhh-------------------------------cCcCHHHHhhCCCeEECCCCcHHHHHHHHHHc
Confidence 0000000000 000 00113456777899999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
+.+++||+|+ |+++|+||..||+++
T Consensus 97 ~~~~~~V~~~-~~~~Gvv~~~di~~~ 121 (121)
T cd04584 97 RIGCLPVVED-GRLVGIITETDLLRT 121 (121)
T ss_pred CCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence 9999999998 899999999999863
No 100
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.22 E-value=3.8e-11 Score=123.82 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=105.2
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
+.+++++. .+.++|++ .+|+.+|...|.++|++++-|++.+ +...||||..|+..
T Consensus 149 trv~~~~~--~~~~~v~~-~~~i~~aa~km~~~gv~s~v~l~~~----------------------~~~~GIvT~~dl~~ 203 (610)
T COG2905 149 TRVGEVKT--LPAVTVSP-QASIQDAARKMKDEGVSSLVVLDDS----------------------GPLLGIVTRKDLRS 203 (610)
T ss_pred HHHHHHhc--CCCcccCc-cCcHHHHHHHHHhcCCCeEEEEcCC----------------------CCccceeehHHHHH
Confidence 55777774 56899999 9999999999999999999999853 56999999999999
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
.+...+. ....||+++|+. |+++|++++-+.+||-+|. ++|||+||. ++|+++
T Consensus 204 ~v~~~g~------~~~~~V~evmT~---p~~svd~~~~~feAml~m~r~~I~hl~V~-----------------e~gq~~ 257 (610)
T COG2905 204 RVIADGR------SKTQKVSEVMTS---PVISVDRGDFLFEAMLMMLRNRIKHLPVT-----------------EDGQPL 257 (610)
T ss_pred HHHhcCC------Ccccchhhhhcc---CceeecCcchHHHHHHHHHHhCCceeeee-----------------cCCeee
Confidence 8764322 235789999994 5999999999999999999 999999997 347889
Q ss_pred eeecHHHHHHHHHHc
Q 015178 167 CWLTQEDLIRYFLNC 181 (412)
Q Consensus 167 ~iITq~DIv~~l~~~ 181 (412)
||||.+||++.+..|
T Consensus 258 Gilt~~dIl~l~s~~ 272 (610)
T COG2905 258 GILTLTDILRLFSQN 272 (610)
T ss_pred EEeeHHHHHHhhCCC
Confidence 999999999988654
No 101
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.22 E-value=9.6e-11 Score=97.09 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=84.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
+..+.+++++.++.+.|.+.+. +.+||+|+ +|+++|+ ++..|+.....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~~~~~~~~~~G~-------------------v~~~dl~~~~~-------- 54 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSH--NGFPVVDSTEESPRLVGY-------------------ILRSQLVVALK-------- 54 (105)
T ss_pred eEEecccccHHHHHHHHHhCCC--CCcceEcCCCCCCEEEEE-------------------EeHHHHHHHHH--------
Confidence 7788999999999999999988 99999998 6899999 56666654210
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m 360 (412)
.+|..++.++.+++++.++++.|
T Consensus 55 ---------------------------------------------------------~~m~~~~~~v~~~~~l~~~~~~~ 77 (105)
T cd04591 55 ---------------------------------------------------------NYIDPSPFTVSPRTSLEKVHQLF 77 (105)
T ss_pred ---------------------------------------------------------HhccCCCceECCCCcHHHHHHHH
Confidence 02456688999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
.+++.+++||++ +|+++|+||++|++++
T Consensus 78 ~~~~~~~~pVv~-~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 78 RKLGLRHLLVVD-EGRLVGIITRKDLLKA 105 (105)
T ss_pred HHcCCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence 999999999996 5899999999999863
No 102
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=2e-10 Score=94.64 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=92.0
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. +.++.+|++.|.+++...+||.+. +++++|+++..|++..+.....
T Consensus 2 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~Giv~~~~l~~~~~~~~~---- 54 (113)
T cd04623 2 DVITVRP-DATVAEAAKLMAEKNIGAVVVVDD----------------------GGRLVGIFSERDIVRKVALRGA---- 54 (113)
T ss_pred CCEEECC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEehHHHHHHHhhcCC----
Confidence 5678899 999999999999999999999995 3589999999999987764211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
.....++.++|... +.++.+++++.++++.|. ++.+++||+++ ++.+|+||..|+++|
T Consensus 55 -~~~~~~~~~~~~~~---~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-----------------~~~~Gvit~~di~~~ 113 (113)
T cd04623 55 -SALDTPVSEIMTRN---VITVTPDDTVDEAMALMTERRFRHLPVVDG-----------------GKLVGIVSIGDVVKA 113 (113)
T ss_pred -CccccCHHHhcCCC---cEEECCCCcHHHHHHHHHHcCCCEeEEEeC-----------------CEEEEEEEHHHhhcC
Confidence 11135688998654 889999999999999999 88899998752 468899999999864
No 103
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2e-10 Score=96.70 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=93.4
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++++++. ++++.+|++.|.+++...+||++. .++++|+++..|+..++........
T Consensus 2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~Giv~~~~l~~~~~~~~~~~~ 58 (124)
T cd04600 2 RDVVTVTP-DTSLEEAWALLRRHRIKALPVVDG----------------------DRRLVGIVTQRDLLRHARPDGRRPL 58 (124)
T ss_pred CCcEEeCC-CCCHHHHHHHHHHcCCceeeEECC----------------------CCCEEEEEEHHHHHhhhcccccchh
Confidence 57889999 999999999999999999999985 3689999999999887653211000
Q ss_pred ---c-ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178 98 ---P-ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE 172 (412)
Q Consensus 98 ---~-~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~ 172 (412)
. ...-..+++++|... +.++.+++++.++++.|. ++.+++||+++ +++.+|+||+.
T Consensus 59 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gvit~~ 119 (124)
T cd04600 59 RGRLRGRDKPETVGDIMSPP---VVTVRPDTPIAELVPLLADGGHHHVPVVDE----------------DRRLVGIVTQT 119 (124)
T ss_pred hhhhhcccccccHHHhccCC---CeeeCCCCcHHHHHHHHHhcCCCceeEEcC----------------CCCEEEEEEhH
Confidence 0 001134688888755 889999999999999999 88999999863 35789999999
Q ss_pred HHHH
Q 015178 173 DLIR 176 (412)
Q Consensus 173 DIv~ 176 (412)
|+++
T Consensus 120 di~~ 123 (124)
T cd04600 120 DLIA 123 (124)
T ss_pred Hhhc
Confidence 9975
No 104
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.5e-10 Score=96.18 Aligned_cols=115 Identities=19% Similarity=0.205 Sum_probs=90.3
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++|+.+|++.|.++++..+||+|. .++++|+++..|+++++...... +.
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~-~~ 57 (116)
T cd04643 2 EVAYVQD-TNTLRHALLVLTKHGYSAIPVLDK----------------------EGKYVGTISLTDILWKLKGLENL-DL 57 (116)
T ss_pred CcEEECC-CCcHHHHHHHHHHCCCceeeeECC----------------------CCcEEEEEeHHHHHHHhhccCch-hH
Confidence 4788999 999999999999999999999995 36899999999999987642110 00
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
....+.+++++|... +.++.+++++.+|++.|... ..+||+++ +++.+|+||+.|++++
T Consensus 58 ~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~-~~~~Vv~~----------------~~~~~Gvit~~dil~~ 116 (116)
T cd04643 58 ERLVDLKVIDVMNTD---VPVIIDDADIEEILHLLIDQ-PFLPVVDD----------------DGIFIGIITRREILKA 116 (116)
T ss_pred HHHhCCcHHHHhcCC---CceecCCCCHHHHHHHHhcC-CceeEEeC----------------CCeEEEEEEHHHhhcC
Confidence 001256799999755 88999999999999999842 35787642 3578899999999863
No 105
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.20 E-value=1.1e-10 Score=125.03 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=107.8
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
..+..++++|+|. ++.+++++ ++++.+|++.|.+++...+||+|+ +++++|+++.
T Consensus 442 ~~L~~~~V~dim~--~~~~~v~~-~~tl~ea~~~l~~~~~~~~~VvD~----------------------~g~lvGiVt~ 496 (574)
T PRK01862 442 ERLRTTQMRELIQ--PAQTVVPP-TASVADMTRVFLEYPVKYLYVVDD----------------------DGRFRGAVAL 496 (574)
T ss_pred hHHhhCcHHHHhc--CCCceeCC-CCCHHHHHHHHHhCCCceEEEEcC----------------------CCeEEEEEEH
Confidence 4577889999994 56788999 999999999999999999999995 3689999999
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH 161 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~ 161 (412)
.|+.+.+...+. ....++.++|... +.++++++++.+|++.|. ++.+++||++++ +
T Consensus 497 ~dL~~~l~~~~~------~~~~~v~dim~~~---~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~--------------~ 553 (574)
T PRK01862 497 KDITSDLLDKRD------TTDKTAADYAHTP---FPLLTPDMPLGDALEHFMAFQGERLPVVESE--------------A 553 (574)
T ss_pred HHHHHHhhcccc------cccchHHHhccCC---CeeECCCCCHHHHHHHHHhcCCCeeeeEeCC--------------C
Confidence 999886643211 1135789999755 789999999999999999 899999998642 1
Q ss_pred CCCeeeeecHHHHHHHHHH
Q 015178 162 NDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 162 ~~~~v~iITq~DIv~~l~~ 180 (412)
+++.+|+||+.|+++.+.+
T Consensus 554 ~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 554 SPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeEEEEEEHHHHHHHHHh
Confidence 2468999999999998764
No 106
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=9.8e-11 Score=99.60 Aligned_cols=112 Identities=17% Similarity=0.213 Sum_probs=84.8
Q ss_pred eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCC----
Q 015178 117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQ---- 191 (412)
Q Consensus 117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~---- 191 (412)
+.++++++++.++++.|. +++..+||+++ +++.+|++|+.|+.++......... ....
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~----------------~~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~ 65 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDE----------------KGKLIGNISASDLKGLLLSPDDLLL-YRTITFKE 65 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEECC----------------CCcEEEEEEHHHhhhhhcCcchhhc-ccchhhhh
Confidence 678999999999999998 78899998753 3678999999999987643211100 0000
Q ss_pred ---Cc-ccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCcc
Q 015178 192 ---PI-NSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSF 248 (412)
Q Consensus 192 ---~i-~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl 248 (412)
.+ .....+..+ +.++.+++++.+|+++|.++++ +.+||+|++|+++|+||..||
T Consensus 66 ~~~~~~~~~~~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~l~Vvd~~~~~~Giit~~di 123 (126)
T cd04642 66 LSEKFTDSDGVKSRP-LITCTPSSTLKEVITKLVANKV--HRVWVVDEEGKPIGVITLTDI 123 (126)
T ss_pred hhhhcccccccccCC-CeEECCCCcHHHHHHHHHHhCC--cEEEEECCCCCEEEEEEHHHH
Confidence 01 112345666 8999999999999999999999 999999998999999554443
No 107
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.19 E-value=2.9e-10 Score=94.76 Aligned_cols=112 Identities=17% Similarity=0.220 Sum_probs=91.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+..++++ ++++.+|++.|.++++..+||.|. +++++|+++..||...+.+...
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~dl~~~~~~~~~---- 54 (115)
T cd04593 2 PPPVLSA-TTPLREAAEQLIESKHGSALVVDR----------------------DGGVVGIITLPDLLRALEADEA---- 54 (115)
T ss_pred CCcEeCC-CCCHHHHHHHHHhCCCcEEEEEcC----------------------CCCEEEEEEHHHHHHHHhcccc----
Confidence 4677888 999999999999999999999995 3689999999999987654211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....+++++|... +.++.+++++.++++.|. ++.+++||+++. ..++++|+||++||++
T Consensus 55 --~~~~~~~~~~~~~---~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~--------------~~~~~~Gvit~~di~~ 114 (115)
T cd04593 55 --GEPSAVDEVATPP---LLTVHPDEPLAHALDRMASRGLRQLPVVDRG--------------NPGQVLGLLTRENVLL 114 (115)
T ss_pred --cccccHHHhccCC---ceEECCCCCHHHHHHHHHHcCCceeeEEeCC--------------CCCeEEEEEEhHHhhc
Confidence 1134588888755 889999999999999999 899999998642 1257899999999975
No 108
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=1.7e-10 Score=96.46 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=86.1
Q ss_pred EEEEeCCCcHHHHHHHHHhcC-CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSH-INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVR 282 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~-i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~ 282 (412)
+.++++++++.+|++.|.+.+ + +.+||+|+ |+++|+ ++..|++.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~Vvd~-~~~~G~-------------------v~~~~l~~~~~~--------- 51 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDL--SALAVVDD-GRPVGL-------------------IMREALMELLST--------- 51 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCc--cEEEEEEC-CeeEEE-------------------EEHHHHHHHHhc---------
Confidence 677899999999999998876 7 99999999 999999 567777643210
Q ss_pred HHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHH
Q 015178 283 LVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALA 362 (412)
Q Consensus 283 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~ 362 (412)
.. .. +... ...+.++|..++++|.+++++.+++..|.+
T Consensus 52 ----~~-----~~--~~~~-------------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~ 89 (119)
T cd04598 52 ----PY-----GR--ALYG-------------------------------KKPVSEVMDPDPLIVEADTPLEEVSRLATG 89 (119)
T ss_pred ----hh-----hH--HHHc-------------------------------CCcHHHhcCCCcEEecCCCCHHHHHHHHHc
Confidence 00 00 0000 011345678889999999999999999999
Q ss_pred cCCcEE---EEEeCCCcEEEEEehHHHHH
Q 015178 363 RRVSYV---WVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 363 ~~ihrl---~VVD~~~~lvGIVT~~DIL~ 388 (412)
++.+++ +||+++|+++|+||..|+++
T Consensus 90 ~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 90 RDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 987544 68988899999999999986
No 109
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.18 E-value=6.1e-11 Score=87.32 Aligned_cols=55 Identities=25% Similarity=0.304 Sum_probs=52.4
Q ss_pred cccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 337 RVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 337 ~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+++|+++++++++++++.++++.|.+++++++||+|++|+++|+||++||++++.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 4678899999999999999999999999999999999999999999999999875
No 110
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.18 E-value=3.8e-10 Score=93.32 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+.++++. +.++.+|++.|.+++...+||.|. ++++|+++..|++..+.+...
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~---- 53 (111)
T cd04589 2 PPLIVDA-STSIRDAARLMREHGADALLVRDG-----------------------DPRLGIVTRTDLLDAVLLDGL---- 53 (111)
T ss_pred CCEEECC-CCcHHHHHHHHHHcCCCEEEEecC-----------------------CeEEEEEEHHHHHHHHHcCCC----
Confidence 4678888 999999999999999999999994 479999999999987653211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
....+++++|... +.++.+++++.++++.|. ++.+++||+++ ++++|+||+.|+++|
T Consensus 54 --~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~dl~~~ 111 (111)
T cd04589 54 --PSSTPVGEIATFP---LITVDPDDFLFNALLLMTRHRIHRVVVREG-----------------GEVVGVLEQTDLLSF 111 (111)
T ss_pred --CCCCCHHHHhCCC---cEEECCCCcHHHHHHHHHHhCccEEEEeeC-----------------CEEEEEEEhHHhhcC
Confidence 1246788998754 889999999999999999 88999999742 467899999999875
No 111
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.17 E-value=1.3e-10 Score=113.79 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=93.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
...+.+++++.+-.++-.+.+. +..||||+..+++|+ +|.+|+..-- +.
T Consensus 200 ~~yL~~~d~v~d~~~l~~kt~~--sRfPVvn~~~kvvGv-------------------Vt~rDv~~~~----~~------ 248 (432)
T COG4109 200 TSYLRETDTVEDWLDLVEKTGH--SRFPVVNRSMKVVGV-------------------VTMRDVLDKK----PS------ 248 (432)
T ss_pred ceeccccccHHHHHHHHHHcCC--CccceecccceEEEE-------------------EEehhhhcCC----CC------
Confidence 6668888999999999899998 999999999999999 6677765410 00
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.+...+|++.++|+.+.+|++.++.+|+-.
T Consensus 249 --------------------------------------------------t~ieKVMtknp~tv~~~tsVAsvaq~MiwE 278 (432)
T COG4109 249 --------------------------------------------------TTIEKVMTKNPITVRAKTSVASVAQMMIWE 278 (432)
T ss_pred --------------------------------------------------ccHHHHhccCCeeecccchHHHHHHHHHhc
Confidence 011236899999999999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
++.-+||||++.+|+||||++|+|+++...+.
T Consensus 279 ~iem~PVv~~n~~llGiitR~dvlk~lq~~q~ 310 (432)
T COG4109 279 GIEMLPVVDSNNTLLGIITRQDVLKSLQMIQR 310 (432)
T ss_pred cceeeeEEcCCceEEEEEEHHHHHHHHHHhcc
Confidence 99999999999999999999999999876544
No 112
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.17 E-value=1.2e-10 Score=112.52 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=87.2
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++++.++.+++++.+|++.|.+.++ +.+||+|++|+++|+ ++..|+++....
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~--~~~~Vvd~~g~~~Gi-------------------vt~~dl~~~~~~---- 214 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRL--GSAIVCDENNQLVGV-------------------FTDGDLRRALLG---- 214 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCC--cEEEEEeCCCCEEEE-------------------EEcHHHHHHHhc----
Confidence 4554337789999999999999999988 999999999999999 566666542100
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
+ . ....++.++|.++++++.+++++.+++
T Consensus 215 -------------------------~-------~-------------------~~~~~v~~im~~~~~~v~~~~~l~~a~ 243 (268)
T TIGR00393 215 -------------------------G-------G-------------------SLKSEVRDFMTLGPKTFKLDALLLEAL 243 (268)
T ss_pred -------------------------C-------C-------------------cccCcHHHhCCCCCeEECCCCcHHHHH
Confidence 0 0 000124567888899999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEe
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVT 382 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT 382 (412)
++|.+++++++||+|++|+++|+|+
T Consensus 244 ~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 244 EFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred HHHHHcCCcEEEEECCCCeEEEEEC
Confidence 9999999999999999899999985
No 113
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.17 E-value=4.4e-10 Score=93.36 Aligned_cols=108 Identities=23% Similarity=0.195 Sum_probs=90.0
Q ss_pred eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178 20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE 99 (412)
Q Consensus 20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~ 99 (412)
.++++. ++++.+|++.|.++++..+||.+. +++++|+++..|++..+.+..
T Consensus 4 ~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~~~------ 54 (113)
T cd04607 4 QLLVSP-DASILDALRKIDKNALRIVLVVDE----------------------NGRLLGTVTDGDIRRALLKGL------ 54 (113)
T ss_pred ceEECC-CCCHHHHHHHHHhcCcCEEEEECC----------------------CCCEEEEEEcHHHHHHHhcCC------
Confidence 467888 999999999999999999999985 368999999999987665321
Q ss_pred cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....++.++|... +.++.+++++.++++.|. ++.+++||+++ +++++|+||++||+.
T Consensus 55 -~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~di~~ 112 (113)
T cd04607 55 -SLDDPVSEVMNRN---PITAKVGSSREEILALMRERSIRHLPILDE----------------EGRVVGLATLDDLLS 112 (113)
T ss_pred -CcCCCHHHhhcCC---CEEEcCCCCHHHHHHHHHHCCCCEEEEECC----------------CCCEEEEEEhHHhcc
Confidence 1245688998644 789999999999999999 88999999863 256899999999863
No 114
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=2.4e-10 Score=97.95 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=92.2
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.+++..++||+|. +++++|+++..||++++.........
T Consensus 2 ~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~i~~~~l~~~~~~~~~~~~~ 58 (132)
T cd04636 2 DVITVKK-DDTLRDVVEILLTGKISGVPVVDN----------------------EGRVVGIVSEGDLIRKIYKGKGLFYV 58 (132)
T ss_pred CCeEeCC-CCcHHHHHHHHHHhCCCccceECC----------------------CCCEEEEEeHHHHHHHHhccCCcccc
Confidence 4678899 999999999999999999999995 35899999999999887542111100
Q ss_pred --------------ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 99 --------------ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 99 --------------~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
......+++++|... +..+.+++++.++++.|. ++.+++||.++ +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~ 118 (132)
T cd04636 59 TLLYSVIFLDESKIKKLLGKKVEEIMTKK---VITVDEDTTIEDVARIMSKKNIKRLPVVDD-----------------G 118 (132)
T ss_pred cccccccccchHHHHHHcCCCHHHhccCC---ceEECCCCcHHHHHHHHHHCCCCeeEEEEC-----------------C
Confidence 001113788888754 789999999999999998 88999999742 4
Q ss_pred CeeeeecHHHHHHH
Q 015178 164 SEYCWLTQEDLIRY 177 (412)
Q Consensus 164 ~~v~iITq~DIv~~ 177 (412)
+.+|++|+.|+++|
T Consensus 119 ~~iGvit~~dl~~~ 132 (132)
T cd04636 119 KLVGIISRGDIIRS 132 (132)
T ss_pred EEEEEEEHHHhhcC
Confidence 68899999999875
No 115
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.6e-10 Score=95.31 Aligned_cols=118 Identities=18% Similarity=0.296 Sum_probs=93.8
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC-
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN- 97 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~- 97 (412)
+++++++ ++++.+|++.|.++++..+||+|.+ .++++|+++..|+..++.+......
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~i~V~d~~---------------------~~~~~G~v~~~dl~~~~~~~~~~~~~ 59 (125)
T cd04631 2 DVVTVPP-TTPIMEAAKIMVRNGFRRLPVVDEG---------------------TGKLVGIITATDILKYLGGGEKFNKI 59 (125)
T ss_pred CceEeCC-CCcHHHHHHHHHHcCcccceeEeCC---------------------CCEEEEEEEHHHHHHHhhccchhccc
Confidence 5788899 9999999999999999999999952 1689999999999988764211100
Q ss_pred ----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178 98 ----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE 172 (412)
Q Consensus 98 ----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~ 172 (412)
.......++.++|... +.++++++++.++++.|. ++.+.++|.++ ++..+|+||..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~----------------~~~~~Gvit~~ 120 (125)
T cd04631 60 KTGNGLEAINEPVRSIMTRN---VITITPDDSIKDAAELMLEKRVGGLPVVDD----------------DGKLVGIVTER 120 (125)
T ss_pred cccccchhhhcCHHHHhcCC---ceEeCCCCcHHHHHHHHHHcCCceEEEEcC----------------CCcEEEEEEHH
Confidence 0012345788888755 899999999999999999 88889998753 25688999999
Q ss_pred HHHHH
Q 015178 173 DLIRY 177 (412)
Q Consensus 173 DIv~~ 177 (412)
||+++
T Consensus 121 di~~~ 125 (125)
T cd04631 121 DLLKA 125 (125)
T ss_pred HhhcC
Confidence 99864
No 116
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.16 E-value=6.6e-11 Score=123.19 Aligned_cols=177 Identities=20% Similarity=0.241 Sum_probs=135.6
Q ss_pred CCchhhhccCCCCceEecCCCCcHHHHHHHHhc------CCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 103 QDPVSVLLPEASGVIRHLEPSASLLEAVDLLLG------GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 103 ~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~------gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..+++++|+.+ +.+++++.++.++++.|.+ ++..++|+++ +++.+|+|+..|++.
T Consensus 130 e~tvg~iMt~~---~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~----------------~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 130 DDSAGRIMTIE---YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNE----------------SKHLKGVLSIRDLIL 190 (449)
T ss_pred cchHHHhCcCc---eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECC----------------CCeEEEEEEHHHHhc
Confidence 36799999866 8999999999999999962 3445565542 356889999999864
Q ss_pred HHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHH
Q 015178 177 YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVA 256 (412)
Q Consensus 177 ~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~ 256 (412)
. ....++++ +|.++ ++++.+++++.+|++.|.++++ .++||||++|+++|+
T Consensus 191 a----------~~~~~v~~--im~~~-~~~v~~~~~~~eal~~m~~~~~--~~lpVVD~~g~lvGi-------------- 241 (449)
T TIGR00400 191 A----------KPEEILSS--IMRSS-VFSIVGVNDQEEVARLIQKYDF--LAVPVVDNEGRLVGI-------------- 241 (449)
T ss_pred C----------CCCCcHHH--HhCCC-CeeECCCCCHHHHHHHHHHcCC--CEEeEEcCCCeEEEE--------------
Confidence 1 01335655 68888 9999999999999999999999 999999999999999
Q ss_pred HhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccc
Q 015178 257 AAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSA 336 (412)
Q Consensus 257 ~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a 336 (412)
+|..|++..+... .-
T Consensus 242 -----It~~Dil~~l~~~-----------------~~------------------------------------------- 256 (449)
T TIGR00400 242 -----VTVDDIIDVIQSE-----------------AT------------------------------------------- 256 (449)
T ss_pred -----EEHHHHHHHHHhh-----------------hH-------------------------------------------
Confidence 6677877643100 00
Q ss_pred cccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 337 RVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 337 ~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
.++|+...+++.+++.+..++.+|.++|+..++|. .+.|++| ..++..+.+.+.+.
T Consensus 257 ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f~~~l~~~ 312 (449)
T TIGR00400 257 EDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNYEDLLLSL 312 (449)
T ss_pred HHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHHHHHHHHH
Confidence 12333445556677889999999999999999884 7899999 88988877665543
No 117
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=3e-10 Score=92.62 Aligned_cols=93 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.+++++.+||+|+ +++++|+++..|+.....
T Consensus 2 ~~~~v~~-~~~i~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~-------- 50 (96)
T cd04614 2 NVPTVWE-ETPLPVAVRIMELANVKALPVLDD----------------------DGKLSGIITERDLIAKSE-------- 50 (96)
T ss_pred CccEeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEEHHHHhcCCC--------
Confidence 5678899 999999999999999999999995 368999999999987310
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
++++++++++.+|++.|. ++.+++||.++ +++++|+||++|+++
T Consensus 51 ------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~----------------~~~~~Giit~~di~~ 95 (96)
T cd04614 51 ------------------VVTATKRTTVSECAQKMKRNRIEQIPIING----------------NDKLIGLLRDHDLLK 95 (96)
T ss_pred ------------------cEEecCCCCHHHHHHHHHHhCCCeeeEECC----------------CCcEEEEEEHHHhhc
Confidence 478999999999999998 99999999863 256889999999975
No 118
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=5e-10 Score=91.92 Aligned_cols=103 Identities=19% Similarity=0.326 Sum_probs=84.4
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.++.++.++++.|.+.+. +.+||+|++|+++|+ ++..|++.... +.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~-------------------v~~~~l~~~~~-----~~---- 52 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKV--SGVPVVKKSGELVGI-------------------ITRKDLLRNPE-----EE---- 52 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCC--CeEEEEcCCCcEEEE-------------------EEHHHHHhccc-----cc----
Confidence 7889999999999999999988 999999988999999 55666543100 00
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
...++|..++.++.+++++.+++.+|.++
T Consensus 53 ---------------------------------------------------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~ 81 (106)
T cd04638 53 ---------------------------------------------------QLALLMTRDPPTVSPDDDVKEAAKLMVEN 81 (106)
T ss_pred ---------------------------------------------------hHHHHhcCCCceECCCCCHHHHHHHHHHc
Confidence 00123456788899999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.+++||+|+ |+++|+||..|+++
T Consensus 82 ~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 82 NIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 9999999996 79999999999975
No 119
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.15 E-value=4.7e-10 Score=93.32 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=84.6
Q ss_pred eEecCCCCcHHHHHHHHh-cC-CceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcc
Q 015178 117 IRHLEPSASLLEAVDLLL-GG-VQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPIN 194 (412)
Q Consensus 117 ~~tV~~~~sL~~ai~lm~-~g-v~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~ 194 (412)
+.++++++++.+|++.|. ++ .++++|+++ +++.+|+||..|+++...... ...++.
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~----------------~~~~~G~v~~~dl~~~~~~~~------~~~~v~ 60 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDN----------------EGRYVGIISLADLRAIPTSQW------AQTTVI 60 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEEcC----------------CCcEEEEEEHHHHHHHHHhhc------cccchh
Confidence 678999999999999987 54 788888753 357889999999998764311 123444
Q ss_pred cccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 195 SLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 195 ~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
+ +|.. ..+.++.+++++.+|++.|.+++. +.+||+|++|+++|+||..||.+
T Consensus 61 ~--~~~~~~~~~~v~~~~~l~~a~~~~~~~~~--~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 61 Q--VMTPAAKLVTVLSEESLAEVLKLLEEQGL--DELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred h--hhcccccceEECCCCcHHHHHHHHHHCCC--CeeEEEcCCCcEEEEEeccceec
Confidence 4 3542 126789999999999999999999 99999998899999977666643
No 120
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=4.3e-10 Score=92.83 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=91.1
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+.+++.+ ++|+.+|++.|.+++...+||++. .++++|+++..|+.+++.+..
T Consensus 2 ~~~~v~~-~~~i~e~~~~~~~~~~~~~~V~~~----------------------~~~~~G~v~~~~l~~~~~~~~----- 53 (111)
T cd04639 2 HFETLSP-ADTLDDAADALLATTQHEFPVVDG----------------------DGHLVGLLTRDDLIRALAEGG----- 53 (111)
T ss_pred CceEcCC-CCcHHHHHHHHHHcCCCcceEECC----------------------CCcEEEEeeHHHHHHHHHhcC-----
Confidence 4567888 999999999999999999999995 368999999999998776421
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
...++.++|... +.++.+++++.++++.|. ++.+++||+++ +++.+|+||..|+.++
T Consensus 54 ---~~~~v~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~it~~dl~~~ 111 (111)
T cd04639 54 ---PDAPVRGVMRRD---FPTVSPSATLDAVLRLMQQGGAPAVPVVDG----------------SGRLVGLVTLENVGEL 111 (111)
T ss_pred ---CCCcHHHHhcCC---CcEECCCCcHHHHHHHHHhcCCceeeEEcC----------------CCCEEEEEEHHHhhcC
Confidence 135799999754 889999999999999999 78999999853 2568899999999763
No 121
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.14 E-value=4.2e-10 Score=93.46 Aligned_cols=105 Identities=22% Similarity=0.377 Sum_probs=86.2
Q ss_pred eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccc
Q 015178 117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINS 195 (412)
Q Consensus 117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~ 195 (412)
+.++.++.++.+|.++|. +++++++|... .+++|++|..|+++.+........ ++.+
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----------------~~l~Giit~~di~~~~~~~~~~~~-----~v~~ 66 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVVDD-----------------GKLVGIITERDILRALAAGGKRLL-----PVKE 66 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------CEEEEEEEHHHHHHHHhccCCccc-----cHHH
Confidence 789999999999999999 89999988742 258899999999999875321110 3433
Q ss_pred ccCCCCCcEEEEeCCCcHHHHHHHHHh-cCCCCceeEEEcCCC-cEeeeecCCcc
Q 015178 196 LNIVDDAGIFAIQYDEPAAFAIPLIAQ-SHINQTSVALVDEEG-RLVGDISPFSF 248 (412)
Q Consensus 196 L~i~~~~~v~tv~~~~~~~~a~~~m~~-~~i~~s~vpVVd~~g-~lvG~IS~~dl 248 (412)
+|+.+ ++++++++++.+|++.|.+ +++ +++||+|+++ +++|++|..|+
T Consensus 67 --v~~~~-~~~~~~~~~~~~~~~~m~~~~~~--~~lpVv~~~~~~lvGivt~~di 116 (117)
T COG0517 67 --VMTKP-VVTVDPDTPLEEALELMVERHKI--RRLPVVDDDGGKLVGIITLSDI 116 (117)
T ss_pred --hccCC-cEEECCCCCHHHHHHHHHHHcCc--CeEEEEECCCCeEEEEEEHHHc
Confidence 57677 9999999999999999999 799 9999999986 99999664443
No 122
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=5.8e-10 Score=96.79 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=91.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC--
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL-- 96 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~-- 96 (412)
++++++. ++++.+|++.|.++++..+||+|. .++++|+++..|+++++.......
T Consensus 2 ~~~~v~~-~~~~~~a~~~~~~~~~~~l~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~~~~ 58 (135)
T cd04621 2 DIATVHP-EHSLLHVVDEMEKNGVGRVIVVDD----------------------NGKPVGVITYRDLAFAEFEDNERGLP 58 (135)
T ss_pred CceEeCC-CCcHHHHHHHHHHcCCCcceEECC----------------------CCCEEEEEeHHHHHHHhhcccccccc
Confidence 3577888 999999999999999999999995 368999999999998775311000
Q ss_pred -----------C----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 97 -----------N----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 97 -----------~----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
. .......+++++|... +.++.+++++.++++.|. ++.+++||+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--------------- 120 (135)
T cd04621 59 KKSIKMKRKAGQKRYRYVKEVPLVAEDIMTEE---IITVSPNDDVVDAAKLMLEANISGLPVVDN--------------- 120 (135)
T ss_pred hhhhhhhhhcccccccccccccccHHHhcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEEeC---------------
Confidence 0 0011245799999754 789999999999999998 88899999742
Q ss_pred CCCCeeeeecHHHHHH
Q 015178 161 HNDSEYCWLTQEDLIR 176 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~ 176 (412)
++++|+||+.|+++
T Consensus 121 --~~~~Gvit~~di~~ 134 (135)
T cd04621 121 --DNIVGVITKTDICR 134 (135)
T ss_pred --CEEEEEEEHHHHhh
Confidence 46889999999976
No 123
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.13 E-value=4.4e-10 Score=92.76 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=91.8
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ ++++.+|++.|.++++..+||+|. +++++|+++..|+.+++.+....
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~G~v~~~~l~~~~~~~~~~-- 55 (114)
T cd04613 1 RDVVTIPE-DTPLNELLDVIAHSPENNFPVVDD----------------------DGRLVGIVSLDDIREILFDPSLY-- 55 (114)
T ss_pred CCceeeCC-CCcHHHHHHHHHhCCCcceeEECC----------------------CCCEEEEEEHHHHHHHHhccccc--
Confidence 35778999 999999999999999999999995 36899999999999876532110
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
-..++.++|... +.++.+++++.++++.|. .+.+++||++.+ .++.+|++|+.|+++
T Consensus 56 ----~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~---------------~~~~~Gvvt~~di~~ 113 (114)
T cd04613 56 ----DLVVASDIMTKP---PVVVYPEDSLEDALKKFEDSDYEQLPVVDDD---------------PGKLLGILSRSDLLS 113 (114)
T ss_pred ----ccEEHHHhccCC---CcEEcCCCCHHHHHHHHhhCCccEeeEEeCC---------------CCEEEEEEEhHHhhc
Confidence 125788999755 789999999999999999 888899987531 256889999999975
No 124
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.13 E-value=1.1e-09 Score=90.21 Aligned_cols=108 Identities=17% Similarity=0.239 Sum_probs=90.3
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++++++. ++++.+|++.|.++++.++||.+. ++++|+++..|+++...+...
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~~l~~~~~~~~~--- 53 (110)
T cd04588 1 KPLITLNP-NATLREAARLFNTHHIHGAPVVDD-----------------------GKLVGIVTLSDIAHAIARGLE--- 53 (110)
T ss_pred CCcEEECC-CCCHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhcccc---
Confidence 35788999 999999999999999999999994 479999999999987553211
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|... +.++.+++++.++++.|. .+.+.+||+++ +++.+|+||..|+++
T Consensus 54 -----~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~i~~~dl~~ 109 (110)
T cd04588 54 -----LAKVKDVMTKD---VITIDEDEQLYDAIRLMNKHNVGRLIVTDD----------------EGRPVGIITRTDILR 109 (110)
T ss_pred -----ccCHHHHhcCC---ceEECCCCCHHHHHHHHHhcCCCEEEEECC----------------CCCEEEEEEhHHhhc
Confidence 15688888644 889999999999999999 88899999753 256889999999975
No 125
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.13 E-value=1.1e-09 Score=114.30 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=102.0
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
..++..+++++|. ++.+++++ ++|+.+|++.|.+++++++||+|. ++++||||.
T Consensus 83 e~v~~VKv~eim~--~~pvtv~p-~~tI~eA~~lm~~~~~~~~vVvD~-----------------------gklvGIVT~ 136 (475)
T TIGR01303 83 QTVAFVKSRDLVL--DTPITLAP-HDTVSDAMALIHKRAHGAAVVILE-----------------------DRPVGLVTD 136 (475)
T ss_pred HHHhhcchhhccc--cCCeEECC-CCCHHHHHHHHHhcCCeEEEEEEC-----------------------CEEEEEEEH
Confidence 4566778889985 56799999 999999999999999999999983 579999999
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH 161 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~ 161 (412)
.|+... + ...+++++|+.. ++++.+++++.+|+++|. ++++++||+++
T Consensus 137 rDL~~~--------~----~~~~V~dIMt~~---litv~~~~sL~eAl~lM~~~~i~~LPVVD~---------------- 185 (475)
T TIGR01303 137 SDLLGV--------D----RFTQVRDIMSTD---LVTAPADTEPRKAFDLLEHAPRDVAPLVDA---------------- 185 (475)
T ss_pred HHhhcC--------C----CCCCHHHHccCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEcC----------------
Confidence 997321 0 135799999855 899999999999999999 89999999863
Q ss_pred CCCeeeeecHHHHHHHHHH
Q 015178 162 NDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 162 ~~~~v~iITq~DIv~~l~~ 180 (412)
+++++|+||+.||++....
T Consensus 186 ~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 186 DGTLAGILTRTGALRATIY 204 (475)
T ss_pred CCeEEEEEEHHHHHHHHhC
Confidence 2568899999999997754
No 126
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.13 E-value=3.9e-10 Score=117.37 Aligned_cols=114 Identities=16% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++ +.++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++..|++..+..
T Consensus 340 im~~~-~~~v~~~~tl~ea~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~~~~---- 393 (454)
T TIGR01137 340 LHLPA-PVTVHPTETVGDAIEILREYGF--DQLPVVTEAGKVLGS-------------------VTLRELLSALFA---- 393 (454)
T ss_pred hCcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCeEEEE-------------------EEHHHHHHHHhc----
Confidence 57788 9999999999999999999988 999999998999999 667777653210
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
.. . . .+.++.++|..++.++++++++.+++
T Consensus 394 ------------------------~~-------~-----~--------------~~~~v~~im~~~~~~v~~~~~l~~a~ 423 (454)
T TIGR01137 394 ------------------------GK-------A-----N--------------PDDAVSKVMSKKFIQIGEGEKLSDLS 423 (454)
T ss_pred ------------------------cC-------C-----C--------------cCCCHHHhcCCCCeEECCcCcHHHHH
Confidence 00 0 0 00123457888889999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
.+|.+++ .+||+++|+++||||++||++++
T Consensus 424 ~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 424 KFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred HHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 9998754 45666678999999999999875
No 127
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=9.7e-10 Score=90.84 Aligned_cols=110 Identities=10% Similarity=0.178 Sum_probs=89.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
.+.++++ ++++.+|++.|.+++...+||.+ +++++|+++..|+..++.+...
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~~-----------------------~~~~~G~v~~~dl~~~~~~~~~---- 53 (112)
T cd04625 2 TIYTVAP-ETLLSEAVATMAEQDLGSLVVME-----------------------RGELVGLLTFREVLQAMAQHGA---- 53 (112)
T ss_pred CcEEECC-CCcHHHHHHHHHHcCCCeEEEee-----------------------CCEEEEEEEHHHHHHHHHhcCC----
Confidence 4678899 99999999999999988888776 3689999999999987764210
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
.....++.++|... +.++.+++++.++++.|. ++.+++||+++ ++.+|+||..|++++
T Consensus 54 -~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~-----------------~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 54 -GVLDTTVRAIMNPE---PIVASPDDSIDEVRRLMVERHLRYLPVLDG-----------------GTLLGVISFHDVAKA 112 (112)
T ss_pred -chhcCCHHHHhCCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEEC-----------------CEEEEEEEHHHhhcC
Confidence 01135799999644 788999999999999999 88999999742 468899999999863
No 128
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.12 E-value=4.5e-10 Score=93.01 Aligned_cols=112 Identities=13% Similarity=0.129 Sum_probs=91.6
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.++++.++||++. +++++|+++..|+++.+.+....
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~~----------------------~~~~~G~v~~~~l~~~~~~~~~~--- 55 (114)
T cd04629 2 NPVTFTP-DMSVTEAVEKLLKSKISGGPVVDD----------------------NGNLVGFLSEQDCLKQLLESSYH--- 55 (114)
T ss_pred CCeEeCC-CCCHHHHHHHHHhcCCCCccEECC----------------------CCeEEEEeehHHHHHHhhhhhhc---
Confidence 5678899 999999999999999999999985 36899999999999877542110
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
.....++.++|... +..+.+++++.++++.|. ++.+++||+++ +..+|+||+.||+++
T Consensus 56 -~~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvit~~di~~~ 114 (114)
T cd04629 56 -CDGVATVRDIMTTE---VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-----------------GKLVGQISRRDVLRA 114 (114)
T ss_pred -cCCCccHHHHhccC---ceEECCCCcHHHHHHHHHHhCCCccCEEEC-----------------CEEEEEEEHHHHhcC
Confidence 11245788998644 788999999999999999 88888988742 467899999999863
No 129
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=7.3e-10 Score=93.01 Aligned_cols=111 Identities=23% Similarity=0.346 Sum_probs=86.7
Q ss_pred ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCC-----CCC
Q 015178 116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLS-----PTP 189 (412)
Q Consensus 116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~-----~l~ 189 (412)
++.++.+++++.++++.|. .+++++||.++ +++.+|++|..|+.+++..+..... ...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~ 65 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNE----------------DGKLVGLLTQRDLLRAALSSLSDNGEESLTKER 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECC----------------CCCEEEEEEHHHHHHHhcccccccccccccccc
Confidence 3678999999999999999 88899998753 2578899999999998754221100 112
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCc
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFS 247 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~d 247 (412)
..++.+ ++..+ +.++.+++++.++++.|.+++. ..+||+|++|+++|+||..|
T Consensus 66 ~~~v~~--~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvit~~d 118 (122)
T cd04803 66 DVPVAE--VMKTD-VLTVTPDTPLREAAEIMVENKI--GCLPVVDDKGTLVGIITRSD 118 (122)
T ss_pred CcCHHH--hhCCC-CeEeCCCCcHHHHHHHHHHcCC--CeEEEEcCCCCEEEEEEHHH
Confidence 334443 56677 8999999999999999999998 99999998899999955333
No 130
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.11 E-value=1.3e-09 Score=114.52 Aligned_cols=167 Identities=17% Similarity=0.155 Sum_probs=122.7
Q ss_pred hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
+.++|. ++++++++ ++|+.+|++.|.++++..+||+|. +++++|+|+..|+....
T Consensus 89 ~~dim~--~~~v~i~~-~~tv~ea~~~m~~~~~~~lpVvd~----------------------~g~lvGiVt~~DL~~~~ 143 (486)
T PRK05567 89 SESGVV--TDPVTVTP-DTTLAEALALMARYGISGVPVVDE----------------------NGKLVGIITNRDVRFET 143 (486)
T ss_pred hhhccc--CCCeEeCC-CCCHHHHHHHHHHhCCCEEEEEcc----------------------CCEEEEEEEHHHhhhcc
Confidence 567774 67899999 999999999999999999999995 36899999999986421
Q ss_pred hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178 90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW 168 (412)
Q Consensus 90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i 168 (412)
....++.++|. ..+++++.+++++.++++.|. ++++.+||+++ .++.+|+
T Consensus 144 -----------~~~~~V~dim~--~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe----------------~g~lvGi 194 (486)
T PRK05567 144 -----------DLSQPVSEVMT--KERLVTVPEGTTLEEALELLHEHRIEKLPVVDD----------------NGRLKGL 194 (486)
T ss_pred -----------cCCCcHHHHcC--CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEEE
Confidence 12357999997 123889999999999999999 89999999864 3578999
Q ss_pred ecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeee
Q 015178 169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDI 243 (412)
Q Consensus 169 ITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~I 243 (412)
||..||++.+.. ... ....-..| .-.. .+.+.++ -.++++.|.+.++ .. .++|. +|+..|++
T Consensus 195 IT~~DLl~~~~~-p~a----~~d~~g~l--~V~a-ai~~~~~--~~e~a~~L~~agv--dv-ivvD~a~g~~~~vl 257 (486)
T PRK05567 195 ITVKDIEKAEEF-PNA----CKDEQGRL--RVGA-AVGVGAD--NEERAEALVEAGV--DV-LVVDTAHGHSEGVL 257 (486)
T ss_pred EEhHHhhhhhhC-CCc----ccccCCCE--EEEe-ecccCcc--hHHHHHHHHHhCC--CE-EEEECCCCcchhHH
Confidence 999999998632 000 00000111 1112 3333332 2788999999999 75 46664 57776763
No 131
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.11 E-value=1.3e-09 Score=89.89 Aligned_cols=109 Identities=22% Similarity=0.241 Sum_probs=90.5
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++++++. +.++.+|++.|.++++..+||.+. ++++|+++..|+..++...+.
T Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~--- 53 (111)
T cd04800 1 RPPVTCSP-DTTIREAARLMTEHRVSSLLVVDD-----------------------GRLVGIVTDRDLRNRVVAEGL--- 53 (111)
T ss_pred CCCEEECC-CCcHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHhccCC---
Confidence 35778899 999999999999999999999994 479999999999986553211
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....++.++|... +..+.++++|.++++.|. ++.+++||++. ++.+|++|..|+++
T Consensus 54 ---~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Giit~~di~~ 110 (111)
T cd04800 54 ---DPDTPVSEVMTAP---PITIPPDATVFEALLLMLERGIHHLPVVDD-----------------GRLVGVISATDLLR 110 (111)
T ss_pred ---CccCCHHHHhCCC---CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-----------------CEEEEEEEHHHhhc
Confidence 1235688888654 889999999999999999 88999998742 46789999999975
No 132
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=8.8e-10 Score=91.09 Aligned_cols=108 Identities=16% Similarity=0.215 Sum_probs=89.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++.++. ++++.+|++.|.++++..+||++. .++++|+++..|+..+.....
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~~~----- 53 (111)
T cd04626 2 DFPTIDE-DASIREALHEMLKYNTNEIIVKDN----------------------EEKLKGVVTFTDILDLDLFES----- 53 (111)
T ss_pred CceEECC-CccHHHHHHHHHHhCCCeEEEEcC----------------------CCCEEEEEehHHhHHHHhhcc-----
Confidence 4678889 999999999999999999999985 368999999999987654311
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....++.++|... +.++.+++++.+|++.|. ++.+++||+++ +..+|+||..|+++
T Consensus 54 --~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~di~~ 110 (111)
T cd04626 54 --FLEKKVFNIVSQD---VFYVNEEDTIDEALDIMREKQIGRLPVVDD-----------------NKLIGVVRTKDILD 110 (111)
T ss_pred --cccCcHHHHhcCC---cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-----------------CEEEEEEEhHHhcc
Confidence 1245788888644 889999999999999999 89999999742 45789999999864
No 133
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.11 E-value=1.3e-09 Score=89.37 Aligned_cols=105 Identities=15% Similarity=0.224 Sum_probs=88.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+..++++ ++++.+|++.|.++++..+||++. .++++|+++..|++.....
T Consensus 3 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~dl~~~~~~------- 52 (109)
T cd04583 3 NPVTITP-DRTLAEAIKLMRDKKVDSLLVVDK----------------------DNKLLGIVSLESLEQAYKE------- 52 (109)
T ss_pred CCEEECC-CCCHHHHHHHHHHCCCceEEEEcC----------------------CCcEEEEEEHHHHHHHhhc-------
Confidence 4677889 999999999999999999999995 2589999999999876422
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|... +..+++++++.++++.|. ++.+++||+++ +++.+|++|..|+++
T Consensus 53 ----~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~----------------~g~~~Gvit~~~l~~ 108 (109)
T cd04583 53 ----AKSLEDIMLED---VFTVQPDASLRDVLGLVLKRGPKYVPVVDE----------------DGKLVGLITRSSLVD 108 (109)
T ss_pred ----CCcHhHhhcCC---ceEECCCCcHHHHHHHHHHcCCceeeEECC----------------CCeEEEEEehHHhhc
Confidence 24688888755 789999999999999999 79999999853 256889999999975
No 134
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=5.8e-10 Score=95.99 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=92.0
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccC--
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENL-- 95 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l-- 95 (412)
++++++++ ++++.+|++.|.++++.++||+|+ .++++|+++..|+..++......
T Consensus 2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~Vvd~----------------------~~~~~Gvi~~~dl~~~~~~~~~~~~ 58 (135)
T cd04586 2 TDVVTVSP-ETSVAEAARLMLDNHISGLPVVDD----------------------DGRLVGIVSEGDLLRRAELGTERRR 58 (135)
T ss_pred CCCEEeCC-CCCHHHHHHHHHHcCCCCceEECC----------------------CCCEEEEeeHHHHHHHhcccCcchh
Confidence 56888999 999999999999999999999995 36899999999998865432100
Q ss_pred -------CCcc-------cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 96 -------LNPE-------SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 96 -------~~~~-------~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
.... .....++.++|... +.++.+++++.++++.|. ++.+++||++ .
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-------------- 120 (135)
T cd04586 59 ARWLDLLAGAEELAAAFVRSHGRKVADVMTRP---VVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-------------- 120 (135)
T ss_pred hhHHHHhcchHHHHHHHHHhcCCCHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCccCEec-C--------------
Confidence 0000 01235688888644 889999999999999999 8999999975 1
Q ss_pred CCCCeeeeecHHHHHH
Q 015178 161 HNDSEYCWLTQEDLIR 176 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~ 176 (412)
++.+|+||+.|+++
T Consensus 121 --g~~~Gvit~~di~~ 134 (135)
T cd04586 121 --GRLVGIVSRADLLR 134 (135)
T ss_pred --CEEEEEEEhHhhhc
Confidence 46889999999976
No 135
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=1.5e-09 Score=89.75 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=91.1
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++.+++. ++++.+|++.|.++++..+||.|. +++++|+++..|+++++....
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~~l~~~~~~~~----- 53 (112)
T cd04624 2 PVVTVDP-DTSIREAAKLMAEENVGSVVVVDP----------------------DERPIGIVTERDIVRAVAAGI----- 53 (112)
T ss_pred CCeEECC-CCcHHHHHHHHHHcCCCEEEEECC----------------------CCCEEEEeeHHHHHHHHhccC-----
Confidence 4678899 999999999999999999999985 368999999999998776422
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..+.++.++|... +.++.+++++.++++.|. ++.+.+||+++ .++..|++|..|+++
T Consensus 54 --~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gilt~~dl~~ 111 (112)
T cd04624 54 --DLDTPVSEIMTRD---LVTVDPDEPVAEAAKLMRKNNIRHHLVVDK----------------GGELVGVISIRDLVR 111 (112)
T ss_pred --CCccCHHHhccCC---CEEECCCCcHHHHHHHHHHcCccEEEEEcC----------------CCcEEEEEEHHHhcc
Confidence 1245688888644 889999999999999999 78899998753 256789999999975
No 136
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=1.7e-09 Score=89.03 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=89.9
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ +.|+.+|++.|.+++...+||.|. .++++|+++..|++..+...
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~----- 53 (110)
T cd04605 2 RPVVTISE-DASIKEAAKLMIEENINHLPVVDE----------------------DGRLVGIVTSWDISKAVARD----- 53 (110)
T ss_pred CCCEEECC-CCCHHHHHHHHHhCCCceEEEECC----------------------CCcEEEEEeHHHHHHHHhhC-----
Confidence 46788999 999999999999999999999985 36899999999998765431
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|... +.++.+++++.++++.|. ++.+++||++. +++.+|+||+.|+++
T Consensus 54 -----~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~v~~~di~~ 109 (110)
T cd04605 54 -----KKSVEDIMTRN---VITATPDEPIDVAARKMERHNISALPVVDA----------------ENRVIGIITSEDISK 109 (110)
T ss_pred -----ccCHHHhcCCC---CeEECCCCcHHHHHHHHHHhCCCEEeEECC----------------CCcEEEEEEHHHhhh
Confidence 13488888644 789999999999999999 88899999753 357889999999965
No 137
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.10 E-value=1.3e-09 Score=90.63 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=87.1
Q ss_pred CeEEEecCCchHHHHHHHHHhcC-CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 19 ALRSLSVSSSTVADALSALKRLN-ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~-I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+.++++. +.|+.+|++.|.+++ ...+||.+. ++++|+++..|++..+.+...
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~--- 54 (115)
T cd04620 2 HPLTVTP-DTPVADAIALMSQQGDSSCVLVVEK-----------------------GRLLGIFTERDIVRLTAIGKD--- 54 (115)
T ss_pred CCeEeCC-CCcHHHHHHHHHhcCCCceEEEcCC-----------------------CcEEEEEeHHHHHHHHhcCCC---
Confidence 4567888 999999999999988 677888872 579999999999987653211
Q ss_pred cccccCCchhhhccCCCCceEecCCC--CcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPS--ASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL 174 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~--~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI 174 (412)
....++.++|... +.++.++ +++.+|++.|. ++.+++||+++ +++++|+||+.|+
T Consensus 55 ---~~~~~i~~~~~~~---~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~----------------~~~~~Gvit~~dl 112 (115)
T cd04620 55 ---LSDLPIGEVMTQP---VVTLQESEIQDIFTALSLFRQHQIRHLPVLDD----------------QGQLIGLVTAESI 112 (115)
T ss_pred ---ccccCHHHhcCCC---cEEEecccccCHHHHHHHHHHhCCceEEEEcC----------------CCCEEEEEEhHHh
Confidence 1135788888644 7788877 78999999999 88999999863 2578999999999
Q ss_pred HH
Q 015178 175 IR 176 (412)
Q Consensus 175 v~ 176 (412)
++
T Consensus 113 ~~ 114 (115)
T cd04620 113 RQ 114 (115)
T ss_pred hc
Confidence 86
No 138
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.09 E-value=1.8e-09 Score=89.13 Aligned_cols=108 Identities=18% Similarity=0.201 Sum_probs=89.0
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.++++..+||++.+ .++++|+++..|+++++.+...
T Consensus 2 ~~~~i~~-~~~i~~a~~~~~~~~~~~~~v~~~~---------------------~~~~~G~v~~~~l~~~~~~~~~---- 55 (111)
T cd04590 2 DIVALDA-DDTLEEILELIAESGHSRFPVYDGD---------------------LDNIIGVVHVKDLLRALAEGEE---- 55 (111)
T ss_pred ceEEEcC-CCCHHHHHHHHhhCCCceEEEECCC---------------------CceEEEEEEHHHHHHHHHcCCC----
Confidence 4788999 9999999999999999999999853 1689999999999998753210
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|. . +.++.+++++.++++.|. ++.+++||+++ .++++|+||++|+++
T Consensus 56 ----~~~~~~~~~-~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~di~~ 110 (111)
T cd04590 56 ----DLDLRDLLR-P---PLFVPESTPLDDLLEEMRKERSHMAIVVDE----------------YGGTAGLVTLEDILE 110 (111)
T ss_pred ----cCCHHHHhc-C---CeecCCCCcHHHHHHHHHhcCCcEEEEEEC----------------CCCEEEEeEHHHhhc
Confidence 145766663 2 688999999999999999 89999999853 256899999999974
No 139
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.08 E-value=1.5e-09 Score=88.99 Aligned_cols=109 Identities=22% Similarity=0.329 Sum_probs=87.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.++++..+||++. ++++|+++..|+.+.+.+...
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~---- 53 (110)
T cd04609 2 DVVSVAP-DDTVSQAIERMREYGVSQLPVVDD-----------------------GRVVGSIDESDLLDALIEGKA---- 53 (110)
T ss_pred CcEEECC-CCcHHHHHHHHHHcCCceeeEeeC-----------------------CeeEEEEeHHHHHHHHhcccc----
Confidence 4678889 999999999999999999999994 479999999999998754211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
....++.++|... +.++.+++++.++.++|.+. +.+||+++ +++++|+||++||++|
T Consensus 54 --~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~-~~~~vv~~----------------~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 54 --KFSLPVREVMGEP---LPTVDPDAPIEELSELLDRG-NVAVVVDE----------------GGKFVGIITRADLLKY 110 (110)
T ss_pred --ccCcCHHHHhcCC---CceeCCCCcHHHHHHHHHhC-CceeEEec----------------CCeEEEEEeHHHhhcC
Confidence 1245688888654 78899999999999999873 44666642 2568899999999876
No 140
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.08 E-value=1.7e-09 Score=90.12 Aligned_cols=116 Identities=20% Similarity=0.151 Sum_probs=91.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhccc-CCC
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEEN-LLN 97 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~-l~~ 97 (412)
++.+++. ++++.+|++.|.++++..+||+|. ++++|+++..|++.++..... ...
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~i~~~~l~~~~~~~~~~~~~ 57 (122)
T cd04585 2 NPITVTP-DTSLMEALKLMKENSIRRLPVVDR-----------------------GKLVGIVTDRDLKLASPSKATTLDI 57 (122)
T ss_pred CCEEeCC-CCcHHHHHHHHHhCCcceeeEecC-----------------------CeEEEEEeHHHHHHhhhcccccccc
Confidence 4678899 999999999999999999999994 579999999999987653110 000
Q ss_pred cc--c-ccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178 98 PE--S-ALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED 173 (412)
Q Consensus 98 ~~--~-~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D 173 (412)
.. . .-..++.++|... +.++.+++++.+++..|. ++.+++||+++ .+..+|+||..|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvvt~~d 118 (122)
T cd04585 58 WELYYLLSKIKVSDIMTRD---PITVSPDASVEEAAELMLERKISGLPVVDD----------------QGRLVGIITESD 118 (122)
T ss_pred hhhhhhhcccCHHHhccCC---CeEeCCCCcHHHHHHHHHHcCCCceeEECC----------------CCcEEEEEEHHH
Confidence 00 0 0135688888754 889999999999999999 88999999853 256889999999
Q ss_pred HHHH
Q 015178 174 LIRY 177 (412)
Q Consensus 174 Iv~~ 177 (412)
++++
T Consensus 119 i~~~ 122 (122)
T cd04585 119 LFRA 122 (122)
T ss_pred hhhC
Confidence 9863
No 141
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.07 E-value=2.2e-09 Score=88.90 Aligned_cols=109 Identities=15% Similarity=0.219 Sum_probs=89.5
Q ss_pred eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178 20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE 99 (412)
Q Consensus 20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~ 99 (412)
...+.+ ++++.+|++.|.+++...+||+|. .++++|+++..|+.+.+.+.+.
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~----------------------~~~~~G~v~~~dl~~~~~~~~~----- 54 (113)
T cd04615 3 PSCVVL-NTDIARAVAEMYTSGSRALPVVDD----------------------KKRLVGIITRYDVLSYALESEE----- 54 (113)
T ss_pred CEEeeC-CCcHHHHHHHHHHcCCceEeEEcC----------------------CCCEEEEEEHHHHHHhhhhhhh-----
Confidence 467788 999999999999999999999995 3589999999999875443211
Q ss_pred cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....++.++|... +.++.+++++.++++.|. ++.+++||+++ +++.+|+||..|+++
T Consensus 55 -~~~~~i~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 55 -LKDAKVREVMNSP---VITIDANDSIAKARWLMSNNNISRLPVLDD----------------KGKVGGIVTEDDILR 112 (113)
T ss_pred -hcCCcHHHhccCC---ceEECCCCcHHHHHHHHHHcCCCeeeEECC----------------CCeEEEEEEHHHhhc
Confidence 1235788888644 889999999999999999 88899999853 357899999999974
No 142
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=2.3e-09 Score=88.44 Aligned_cols=107 Identities=18% Similarity=0.265 Sum_probs=90.4
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++++++. +.++.+|.+.|.+++...+||.|. ++++|+++..|+...+...
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~dl~~~~~~~----- 52 (110)
T cd04595 2 SPVKTVRP-EATIEEARELLLRYGHTALPVVEG-----------------------GRVVGIISRRDVEKALRHG----- 52 (110)
T ss_pred CCceEeCC-CCcHHHHHHHHHHcCCCeeeEeeC-----------------------CEEEEEEEHHHHHHHHhcc-----
Confidence 57889999 999999999999999999999994 4799999999998765321
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....++.++|... +.++.+++++.++++.|. ++.+++||+++ ++.+|+||+.|+++
T Consensus 53 ---~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~~~~Gvvt~~di~~ 109 (110)
T cd04595 53 ---LGHAPVKDYMSTD---VVTVPPDTPLSEVQELMVEHDIGRVPVVED-----------------GRLVGIVTRTDLLR 109 (110)
T ss_pred ---cccCcHHHHhcCC---CEEECCCCcHHHHHHHHHHcCCCeeEEEeC-----------------CEEEEEEEhHHhhc
Confidence 1246788999754 789999999999999999 88999998741 46789999999975
No 143
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.06 E-value=9.9e-10 Score=95.62 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=76.9
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
+.++.+++++.+|++.|.++++ +++||+|++|+++|+ ++..|++.+.........
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~--~~~~VvD~~g~l~Gi-------------------vt~~Dl~~~~~~~~~~~~---- 57 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQ--SCVLVVDSDDFLEGI-------------------LTLGDIQRFLFTNKTTRV---- 57 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCC--CEEEEECCCCeEEEE-------------------EEHHHHHHHHhhcccccc----
Confidence 7889999999999999999988 999999999999999 667776654311000000
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.... +.+.... ....++ . . ...+.+.|+.+++++++++++.+|++.|.++
T Consensus 58 --------~~~~--~~~~~~~-----------~~v~~i-----~-~---~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~ 107 (133)
T cd04592 58 --------QPED--ETKQTNT-----------CLVSSV-----C-T---KGISYGGQECGLWTCTPDTDLTTAKKLMEAK 107 (133)
T ss_pred --------ccch--hhccccc-----------ccHHHH-----h-h---hhhhhcccCCCCEEECCCCCHHHHHHHHHHc
Confidence 0000 0000000 000000 0 0 0001123467899999999999999999999
Q ss_pred CCcEEEEEeCCC
Q 015178 364 RVSYVWVVEEDC 375 (412)
Q Consensus 364 ~ihrl~VVD~~~ 375 (412)
+++++||+|+++
T Consensus 108 ~~~~lPVvd~~~ 119 (133)
T cd04592 108 GVKQLPVVKRGV 119 (133)
T ss_pred CCCcCCEecCCc
Confidence 999999999753
No 144
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.7e-09 Score=90.86 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=92.2
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.++++..+||+|. ++++|+++..|+.+.+.+.......
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~~~~~ 57 (122)
T cd04637 2 RVVTVEM-DDRLEEVREIFEKHKFHHLLVVED-----------------------NELVGVISDRDYLKAISPFLGTAGE 57 (122)
T ss_pred CceEeCC-CCCHHHHHHHHHhCCCCEEEEEeC-----------------------CeEEEEEEHHHHHHHHHHHhccccc
Confidence 4678899 999999999999999999999994 4799999999999876531100000
Q ss_pred --c--cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178 99 --E--SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED 173 (412)
Q Consensus 99 --~--~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D 173 (412)
. .....++.++|... ++.+.+++++.++++.|. ++.+++||+++ +++.+|++|..|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~----------------~~~~~Gvit~~d 118 (122)
T cd04637 58 TEKDLATLNRRAHQIMTRD---PITVSPDTPVDEASKLLLENSISCLPVVDE----------------NGQLIGIITWKD 118 (122)
T ss_pred hHHHHHHHHhHHHHhhcCC---CeeeCCCCcHHHHHHHHHHcCCCeEeEECC----------------CCCEEEEEEHHH
Confidence 0 11235688888755 889999999999999999 88899999753 256889999999
Q ss_pred HHHH
Q 015178 174 LIRY 177 (412)
Q Consensus 174 Iv~~ 177 (412)
+++|
T Consensus 119 ll~~ 122 (122)
T cd04637 119 LLKY 122 (122)
T ss_pred hhhC
Confidence 9875
No 145
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.06 E-value=1.7e-09 Score=89.38 Aligned_cols=111 Identities=24% Similarity=0.260 Sum_probs=91.6
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++.++++ ++++.+|++.|.+.+...+||.+. +++++|+++..|+...+.+....
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~d~----------------------~~~~~G~v~~~~i~~~~~~~~~~--- 56 (114)
T cd04604 3 ALPLVSP-DTSLKDALLEMSRKGLGMTAVVDE----------------------DGRLVGIFTDGDLRRALEKGLDI--- 56 (114)
T ss_pred cccccCC-CCcHHHHHHHHHhcCccEEEEEcC----------------------CCCEEEEechHHHHHHHhccCcc---
Confidence 4567888 999999999999999999999995 36899999999999887642211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
...++.++|... +.++.+++++.++++.|. ++.+++||++. +++.+|+||..||+++
T Consensus 57 ---~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~iG~it~~di~~~ 114 (114)
T cd04604 57 ---LTLPVADVMTRN---PKTIDPDALAAEALELMEENKITALPVVDD----------------NGRPVGVLHIHDLLRA 114 (114)
T ss_pred ---ccCCHHHhhccC---CeEECCCCcHHHHHHHHHHcCCCEEEEECC----------------CCCEEEEEEHHHhhcC
Confidence 124799999754 678999999999999999 88899999853 2578999999999763
No 146
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.06 E-value=1.5e-09 Score=90.93 Aligned_cols=115 Identities=22% Similarity=0.275 Sum_probs=91.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC--
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL-- 96 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~-- 96 (412)
+++++++ ++|+.+|++.|.++++..+||++. ++++|+++..|+...+.......
T Consensus 2 ~~~~i~~-~~~~~~~~~~l~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~~~~~ 57 (121)
T cd04633 2 PVITVSP-DDRVSHARRLMLDHDISRLPVIEG-----------------------GKLVGIVTEKDIADALRSFRPLVRD 57 (121)
T ss_pred CCEEECC-CCcHHHHHHHHHHcCCCeeEEEEC-----------------------CEEEEEEchHHHHHhhhhhhhcccc
Confidence 5678899 999999999999999999999993 58999999999998765321100
Q ss_pred -Ccccc-cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178 97 -NPESA-LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED 173 (412)
Q Consensus 97 -~~~~~-l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D 173 (412)
..... ...++.++|... +.++.+++++.++++.|. .+.+++||+++ ++.+|+||..|
T Consensus 58 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvi~~~d 117 (121)
T cd04633 58 RHQERRIRNLPVSDIMTRP---VITIEPDTSVSDVASLMLENNIGGLPVVDD-----------------GKLVGIVTRTD 117 (121)
T ss_pred hhhhhhhhccCHHHHccCC---ceEECCCCcHHHHHHHHHHcCCCcccEEEC-----------------CEEEEEEEHHH
Confidence 00011 135688888654 889999999999999998 88999998752 46889999999
Q ss_pred HHHH
Q 015178 174 LIRY 177 (412)
Q Consensus 174 Iv~~ 177 (412)
+++|
T Consensus 118 l~~~ 121 (121)
T cd04633 118 ILRY 121 (121)
T ss_pred hhcC
Confidence 9874
No 147
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.05 E-value=3.1e-09 Score=87.82 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=89.5
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.+++...+||.+. ++++|+++..|++..+...+.
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~---- 53 (113)
T cd04587 2 KPATVSP-TTTVQEAAKLMREKRVSCVLVMDG-----------------------NKLVGIFTSKDIALRVVAQGL---- 53 (113)
T ss_pred CCeEeCC-CCCHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHHhcCC----
Confidence 4677888 999999999999999999999983 479999999999876553211
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
.....++.++|... +.++.+++++.++++.|. ++.+++||+++ +++++|+||..|++.
T Consensus 54 -~~~~~~v~~i~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~----------------~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 54 -DPESTLVERVMTPN---PVCATSDTPVLEALHLMVQGKFRHLPVVDK----------------SGQVVGLLDVTKLTH 112 (113)
T ss_pred -CcCcCCHHHhcCCC---CeEEcCCCCHHHHHHHHHHcCCCcccEECC----------------CCCEEEEEEHHHhcc
Confidence 11136799998644 789999999999999999 88899998753 256899999999863
No 148
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.05 E-value=3.7e-09 Score=86.88 Aligned_cols=108 Identities=25% Similarity=0.347 Sum_probs=90.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++.++++ +.++.+|++.|.+++...+||.+. ++++|+++..|+.++..+...
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~---- 53 (111)
T cd04611 2 QILTCPP-DTSLAEAASRMRERRISSIVVVDD-----------------------GRPLGIVTERDILRLLASGPD---- 53 (111)
T ss_pred CceEECC-CCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEeHHHHHHHHhcCCC----
Confidence 4677888 999999999999999999999983 589999999999988754210
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
...+++++|... +.++.+++++.++++.|. .+.+.++|+++ +++.+|+||+.|+++
T Consensus 54 ---~~~~v~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~----------------~~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 ---LQTPVGEVMSSP---LLTVPADTSLYDARQLMREHGIRHLVVVDD----------------DGELLGLLSQTDLLQ 110 (111)
T ss_pred ---CCcCHHHhcCCC---ceEECCCCCHHHHHHHHHHcCCeEEEEECC----------------CCcEEEEEEhHHhhc
Confidence 246788988654 789999999999999999 88889998753 256789999999975
No 149
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.05 E-value=1.4e-09 Score=113.21 Aligned_cols=124 Identities=21% Similarity=0.280 Sum_probs=100.9
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
++|+.++++++|. ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+.
T Consensus 330 ~~l~~~~v~~im~--~~~~~v~~-~~tl~ea~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt~ 384 (454)
T TIGR01137 330 DVLKNATVKDLHL--PAPVTVHP-TETVGDAIEILREYGFDQLPVVTE----------------------AGKVLGSVTL 384 (454)
T ss_pred HHhccCCHHHhCc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCeEEEEEEH
Confidence 5688899999994 67999999 999999999999999999999985 3689999999
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
.|+++.+.+... ....++.++|... +.++++++++.++++.|... +.+|+.+ +
T Consensus 385 ~dl~~~~~~~~~------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~~~~~--~~~vV~~----------------~ 437 (454)
T TIGR01137 385 RELLSALFAGKA------NPDDAVSKVMSKK---FIQIGEGEKLSDLSKFLEKN--SSAIVTE----------------E 437 (454)
T ss_pred HHHHHHHhccCC------CcCCCHHHhcCCC---CeEECCcCcHHHHHHHHHHC--CeeEEEE----------------C
Confidence 999987754211 1235799999754 78999999999999999842 2344432 2
Q ss_pred CCeeeeecHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYF 178 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l 178 (412)
++++|+||..||+++|
T Consensus 438 g~liGvvt~~dll~~l 453 (454)
T TIGR01137 438 GKPIGVVTKIDLLSFL 453 (454)
T ss_pred CEEEEEEEHHHHHHhh
Confidence 5688999999999986
No 150
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.05 E-value=2.9e-09 Score=87.58 Aligned_cols=110 Identities=17% Similarity=0.171 Sum_probs=90.2
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++.+++ ++++.+|++.|.++++..+||.+. ++++|+++..|+........ .
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~-~-- 53 (111)
T cd04612 1 PDVVTVPV-DLTVDEVLALMFGERHRGYPVVDD-----------------------GRLVGIVTLADIRRVPAEGR-E-- 53 (111)
T ss_pred CCCEEeCC-CCcHHHHHHHHHHcCCCcceEeeC-----------------------CeEEEEEEHHHHHHHHhcCc-c--
Confidence 45788999 999999999999999999999994 47999999999988654311 0
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
...++.++|... +.++.+++++.++++.|. ++.+.+||.++ +++.+|+||..|+++
T Consensus 54 ----~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~it~~di~~ 110 (111)
T cd04612 54 ----ATVLVGDVMTRD---PVTASPDETLRDALKRMAERDIGRLPVVDD----------------SGRLVGIVSRSDLLR 110 (111)
T ss_pred ----cccCHHHhccCC---CeEECCCCCHHHHHHHHHhCCCCeeeEEcC----------------CCCEEEEEEHHHhhh
Confidence 013577888644 889999999999999999 78999999853 256889999999976
Q ss_pred H
Q 015178 177 Y 177 (412)
Q Consensus 177 ~ 177 (412)
+
T Consensus 111 ~ 111 (111)
T cd04612 111 A 111 (111)
T ss_pred C
Confidence 3
No 151
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.04 E-value=4e-09 Score=87.14 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=89.0
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH-HhhhcccCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS-FLCKEENLL 96 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~-~l~~~~~l~ 96 (412)
++++++++ ++++.+|++.|.+++...+||.+. ++++|+++..|++. .+.....
T Consensus 1 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~i~~~~l~~~~~~~~~~-- 54 (113)
T cd04622 1 RDVVTVSP-DDTIREAARLMREHDVGALPVCEN-----------------------DRLVGIVTDRDIVVRAVAEGRD-- 54 (113)
T ss_pred CCCEEECC-CCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEhHHHHHHHhhccCC--
Confidence 35788999 999999999999999999999994 58999999999974 3332111
Q ss_pred CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178 97 NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI 175 (412)
Q Consensus 97 ~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv 175 (412)
....++.++|... +.++.+++++.++++.|. ++.+++||.++ +++.+|+||..|++
T Consensus 55 ----~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~it~~di~ 111 (113)
T cd04622 55 ----PDTTTVGDVMTRG---VVTVTEDDDVDEAARLMREHQVRRLPVVDD----------------DGRLVGIVSLGDLA 111 (113)
T ss_pred ----cccCCHHHhccCC---ccEECCCCCHHHHHHHHHHcCCCeeeEECC----------------CCcEEEEEEHHHhh
Confidence 1123488998755 788999999999999999 88999999753 25688999999997
Q ss_pred H
Q 015178 176 R 176 (412)
Q Consensus 176 ~ 176 (412)
+
T Consensus 112 ~ 112 (113)
T cd04622 112 R 112 (113)
T ss_pred c
Confidence 5
No 152
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.04 E-value=2.5e-09 Score=87.50 Aligned_cols=99 Identities=16% Similarity=0.244 Sum_probs=80.3
Q ss_pred eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccc
Q 015178 117 IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINS 195 (412)
Q Consensus 117 ~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~ 195 (412)
+.+++++.++.+|++.|. ++.++++|.++ +++.+|++|..|+.+... .++.+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~----------------~g~~~Giv~~~dl~~~~~-----------~~~~~ 55 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVVDA----------------DGQPLGFVTRREAARASG-----------GCCGD 55 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEECC----------------CCCEEEEEeHHHHHHhcc-----------cchhh
Confidence 678999999999999988 77888888752 357889999999987421 12333
Q ss_pred ccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCc
Q 015178 196 LNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFS 247 (412)
Q Consensus 196 L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~d 247 (412)
+|.+. +.++.+++++.+|++.|.++++ ..+||+|++|+++|+||..|
T Consensus 56 --~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~Vv~~~~~~~Gvi~~~~ 102 (106)
T cd04582 56 --HAEPF-KVTVSVDDDLRIVLSRMFAHDM--SWLPCVDEDGRYVGEVTQRS 102 (106)
T ss_pred --hcccC-CEEECCCCCHHHHHHHHHHCCC--CeeeEECCCCcEEEEEEHHH
Confidence 46666 7889999999999999999999 99999999899999955333
No 153
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.03 E-value=4.4e-09 Score=86.90 Aligned_cols=110 Identities=19% Similarity=0.256 Sum_probs=90.2
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ ++++.+|++.|.+++...+||++. ++++|+++..|++.++...+.
T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~--- 53 (112)
T cd04802 1 KNVITVDP-DTTVYEAANIMTENNIGRLIVVDN-----------------------EKPVGIITERDLVKKVVSRNL--- 53 (112)
T ss_pred CCcEEECC-CCCHHHHHHHHHHCCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHhhccC---
Confidence 35778899 999999999999999999999993 489999999999987653210
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
.....++.++|... +..+.+++++.++++.|. ++.+.+||+++ ++.+|+||..|+++
T Consensus 54 --~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~Gvi~~~di~~ 111 (112)
T cd04802 54 --KPREVPVGEVMSTP---LITIDPNASLNEAAKLMAKHGIKRLPVVDD-----------------DELVGIVTTTDIVM 111 (112)
T ss_pred --CcccCCHHHhcCCC---cEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----------------CEEEEEEEhhhhhc
Confidence 11235688888654 789999999999999999 88889999753 25789999999974
No 154
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=1.3e-09 Score=92.80 Aligned_cols=114 Identities=16% Similarity=0.177 Sum_probs=86.5
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH-----hhhcc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF-----LCKEE 93 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~-----l~~~~ 93 (412)
+.++++. ++++.+|++.|.++++..+||.|. +++++|+++..|+... +.+..
T Consensus 2 ~~~~v~~-~~~i~~a~~~~~~~~~~~~~V~d~----------------------~~~~~Giv~~~dl~~~~~~~~~~~~~ 58 (126)
T cd04640 2 KPIVIPA-DTSIDEALELMIKHGVRLLLVVDS----------------------DDNFIGVITAVDLLGEEPIKRIQEGG 58 (126)
T ss_pred CCeEECC-CCcHHHHHHHHHHcCCcEEEEEcC----------------------CCcEEEEEEHHHHhhChhhHHHHHcC
Confidence 3678889 999999999999999999999995 3689999999999862 22210
Q ss_pred cCCCcccccCCchhhhccCCCCceEec----CCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178 94 NLLNPESALQDPVSVLLPEASGVIRHL----EPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW 168 (412)
Q Consensus 94 ~l~~~~~~l~~~V~dvm~~~~~~~~tV----~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i 168 (412)
......+++++|... -....+ .+++++.++++.|. ++.+++||++++ ++.++|+
T Consensus 59 -----~~~~~~~v~~im~~~-~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~---------------~~~~~G~ 117 (126)
T cd04640 59 -----ISRSELTVADVMTPK-EDLKALDLEELENASVGDVVETLKASGRQHALVVDRE---------------HHQIRGI 117 (126)
T ss_pred -----CCchheEHHHhcCch-hhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC---------------CCEEEEE
Confidence 011246699999643 011233 36899999999999 899999998631 1468899
Q ss_pred ecHHHHHH
Q 015178 169 LTQEDLIR 176 (412)
Q Consensus 169 ITq~DIv~ 176 (412)
||.+||++
T Consensus 118 it~~di~~ 125 (126)
T cd04640 118 ISTSDIAR 125 (126)
T ss_pred EeHHHHhh
Confidence 99999975
No 155
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.02 E-value=1.9e-09 Score=113.33 Aligned_cols=123 Identities=18% Similarity=0.132 Sum_probs=98.0
Q ss_pred chhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 9 GVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 9 ~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.|.+++.+. ...+++++ ++|+.+|++.|.+++++.+||+|.... +++++||||..||..
T Consensus 95 kVk~~~~g~i~~~~tV~p-d~tl~eAl~~m~~~~~~~vpVVD~~~~-------------------~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTP-DNTLADVLDLKEKTGHSTVAVTEDGTA-------------------HGKLLGIVTSRDYRI 154 (502)
T ss_pred HHHHHhcCCcCCCCEeCC-CCcHHHHHHHHHhcCCCeEEEEeCCCc-------------------CCEEEEEEEcHHhhc
Confidence 466776422 23468999 999999999999999999999995211 368999999999853
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
. . ...+.+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++ +++++
T Consensus 155 ~--~--------~~~~~~V~dIMt~~-~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~----------------~g~Lv 207 (502)
T PRK07107 155 S--R--------MSLDTKVKDFMTPF-EKLVTANEGTTLKEANDIIWDHKLNTLPIVDK----------------NGNLV 207 (502)
T ss_pred c--c--------cCCCCCHHHHhCCC-CCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCeEE
Confidence 2 1 12357899999842 23889999999999999999 99999999863 25689
Q ss_pred eeecHHHHHHHH
Q 015178 167 CWLTQEDLIRYF 178 (412)
Q Consensus 167 ~iITq~DIv~~l 178 (412)
|+||..|+++..
T Consensus 208 GIIT~~Dilk~~ 219 (502)
T PRK07107 208 YLVFRKDYDSHK 219 (502)
T ss_pred EEEEhHHHHhcc
Confidence 999999999964
No 156
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.02 E-value=3.3e-09 Score=88.97 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=90.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.+++..++||+|. .++++|+++..|++..........+.
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~~~~~~~ 58 (122)
T cd04635 2 EPVTCTP-DDPVSKVWDLMLESGFTGLPVVQK----------------------AGELIGIITRRDIIRAGSVRTSVEDQ 58 (122)
T ss_pred CCEEeCC-CCcHHHHHHHHHHcCCCcccEECC----------------------CCcEEEEEEcHHHHhhccccccccch
Confidence 5788999 999999999999999999999985 36899999999998753211000000
Q ss_pred ---ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178 99 ---ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL 174 (412)
Q Consensus 99 ---~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI 174 (412)
......++.++|... +.++.+++++.++++.|. ++.+++||+++ .++.+|++|..|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~----------------~g~~~Gvit~~dl 119 (122)
T cd04635 59 QRTQTKASPTVEKIMSTP---VYSVTPDDSIATAVELMLEHDIGRLPVVNE----------------KDQLVGIVDRHDV 119 (122)
T ss_pred hhhhhhccCcHHHHhcCC---CeeECCCCCHHHHHHHHHHcCCCeeeEEcC----------------CCcEEEEEEhHHh
Confidence 001245688888644 889999999999999999 89999999853 2568999999999
Q ss_pred HH
Q 015178 175 IR 176 (412)
Q Consensus 175 v~ 176 (412)
++
T Consensus 120 ~~ 121 (122)
T cd04635 120 LK 121 (122)
T ss_pred hc
Confidence 75
No 157
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.02 E-value=3.4e-09 Score=87.33 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=88.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++.+++. ++++.+|++.|.+++...+||+|. .++++|+++..|+....
T Consensus 3 ~~~~~~~-~~~~~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~--------- 50 (108)
T cd04596 3 DTGYLTT-TDTVKDWHELNKETGHSRFPVVDE----------------------KNKVVGIVTSKDVAGKD--------- 50 (108)
T ss_pred ccEEeCC-CCCHHHHHHHHHHcCCCceeEECC----------------------CCeEEEEecHHHHhccc---------
Confidence 4688899 999999999999999999999985 36899999999997421
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
...+++++|... +.++.+++++.++++.|. ++.+.+||+++ +++.+|++|..|+++
T Consensus 51 ---~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~G~it~~di~~ 107 (108)
T cd04596 51 ---PDTTIEKVMTKN---PITVNPKTSVASVAHMMIWEGIEMLPVVDD----------------NKKLLGIISRQDVLK 107 (108)
T ss_pred ---ccccHHHHhcCC---CeEECCCCCHHHHHHHHHHcCCCeeeEEcC----------------CCCEEEEEEHHHhhc
Confidence 135788998644 789999999999999999 89999999753 357899999999975
No 158
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.01 E-value=4.4e-09 Score=87.68 Aligned_cols=108 Identities=24% Similarity=0.186 Sum_probs=85.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.++++..+||+|.... +++++|+++..|++.. ..
T Consensus 3 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~V~d~~~~-------------------~~~~~G~v~~~dl~~~-~~------- 54 (114)
T cd04602 3 DPSVLSP-DHTVADVLEIKEKKGFSGIPVTEDGKS-------------------GGKLLGIVTSRDIDFL-TD------- 54 (114)
T ss_pred CCeEcCC-CCCHHHHHHHHHHcCCCceEEeeCCCc-------------------CCEEEEEEEhHHhhhh-hc-------
Confidence 4678888 999999999999999999999995211 3689999999998642 11
Q ss_pred ccccCCchhhhccCCCCceEec--CCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHL--EPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI 175 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV--~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv 175 (412)
...+++++|... ..++ .+++++.++++.|. ++.+++||+++ +++++|+||..|++
T Consensus 55 ---~~~~v~~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~----------------~~~~~Gvit~~di~ 112 (114)
T cd04602 55 ---SETPLSEVMTPR---EVLVVAPTGITLEEANEILRESKKGKLPIVND----------------DGELVALVTRSDLK 112 (114)
T ss_pred ---cCCCHHHhcCCC---ceEEECCCCCCHHHHHHHHHhcCCCceeEECC----------------CCeEEEEEEHHHhh
Confidence 125688988644 4455 55999999999999 89999999853 25689999999997
Q ss_pred H
Q 015178 176 R 176 (412)
Q Consensus 176 ~ 176 (412)
+
T Consensus 113 ~ 113 (114)
T cd04602 113 K 113 (114)
T ss_pred c
Confidence 5
No 159
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=3.9e-09 Score=86.02 Aligned_cols=101 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.++++..+||+|. ++++|+++..|+....
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~Giv~~~~l~~~~--------- 48 (105)
T cd04599 2 DPITIDP-LDSVGRAARLMEKHRIGGLPVVED-----------------------GKLVGIITSRDVRRAH--------- 48 (105)
T ss_pred CCEEECC-CCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEehHHhhccc---------
Confidence 4677889 999999999999999999999982 5899999999997631
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI 175 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv 175 (412)
...++.++|... +.++++++++.++++.|. ++..++||+++ ++.+|+||..|++
T Consensus 49 ---~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----------------~~~~G~it~~~l~ 103 (105)
T cd04599 49 ---PNRLVADAMTRE---VVTISPEASLLEAKRLMEEKKIERLPVLRE-----------------RKLVGIITKGTIA 103 (105)
T ss_pred ---ccCCHHHHccCC---CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-----------------CEEEEEEEHHHhc
Confidence 124588888644 889999999999999999 89999999752 4678999999986
No 160
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.99 E-value=3.2e-09 Score=87.17 Aligned_cols=106 Identities=23% Similarity=0.183 Sum_probs=85.9
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++.++++. ++++.+|++.|.+++..++||.|. +++++|+++..|+....
T Consensus 2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~-------- 50 (110)
T cd04601 2 RDPITVSP-DATVAEALELMAEYGISGLPVVDD----------------------DGKLVGIVTNRDLRFET-------- 50 (110)
T ss_pred CCCeEeCC-CCcHHHHHHHHHHcCCceEEEEcC----------------------CCEEEEEEEhhHeeecc--------
Confidence 35678899 999999999999999999999995 36899999999986421
Q ss_pred cccccCCchhhhccCCCCceEecCC-CCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEP-SASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLI 175 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~-~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv 175 (412)
....++.++|... +..+.+ ++++.++++.|. ++.+++||+++ .+..+|+||.+|++
T Consensus 51 ---~~~~~v~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvi~~~dil 108 (110)
T cd04601 51 ---DLDKPVSEVMTPE---NLLTTVEGTSLEEALELLHEHKIEKLPVVDD----------------EGKLKGLITVKDIE 108 (110)
T ss_pred ---cCCCCHHHhcccC---ceEEecCCCCHHHHHHHHHHhCCCeeeEEcC----------------CCCEEEEEEhhhhh
Confidence 1135788888643 455566 999999999999 88889999753 25689999999997
Q ss_pred H
Q 015178 176 R 176 (412)
Q Consensus 176 ~ 176 (412)
+
T Consensus 109 ~ 109 (110)
T cd04601 109 K 109 (110)
T ss_pred c
Confidence 5
No 161
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.99 E-value=1.3e-08 Score=107.16 Aligned_cols=114 Identities=16% Similarity=0.016 Sum_probs=95.4
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ ++|+.+|++.|.++++.++||+|.... .++++|+||..||.. +.
T Consensus 108 ~dpvtV~p-d~tV~dA~~lm~~~~~~~lpVvD~~~~-------------------~GklvGIVT~~DL~~-v~------- 159 (505)
T PLN02274 108 SDPVVKSP-SSTISSLDELKASRGFSSVCVTETGTM-------------------GSKLLGYVTKRDWDF-VN------- 159 (505)
T ss_pred CCCeeeCC-CCcHHHHHHHHHhcCCceEEEEeCCCc-------------------CCeEEEEEEHHHHhh-cc-------
Confidence 57899999 999999999999999999999985211 268999999999853 21
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
....||+++|+.. .+++++.+++++.+|+++|. ++++++||+++ +++++|+||+.||++
T Consensus 160 ---~~~~~V~eIMt~~-~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~----------------~g~LvGvITr~DIlk 219 (505)
T PLN02274 160 ---DRETKLSEVMTSD-DDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE----------------DGELVDLVTRTDVKR 219 (505)
T ss_pred ---ccCCcHHHHhccC-CCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCeEEEEEEHHHHHH
Confidence 1257899999733 23789999999999999999 99999999863 356899999999999
Q ss_pred HHH
Q 015178 177 YFL 179 (412)
Q Consensus 177 ~l~ 179 (412)
++.
T Consensus 220 ~~~ 222 (505)
T PLN02274 220 VKG 222 (505)
T ss_pred Hhh
Confidence 875
No 162
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.97 E-value=1.1e-08 Score=83.05 Aligned_cols=111 Identities=24% Similarity=0.267 Sum_probs=89.5
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++++++. ++++.+|++.|.+++...+||++.+ ++++|+++..|++.++......
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~--- 55 (113)
T cd02205 2 DVVTVSP-DDTVAEALRLMLEHGISGLPVVDDD----------------------GRLVGIVTERDLLRALAEGGLD--- 55 (113)
T ss_pred CceEecC-CCCHHHHHHHHHhcCCceEEEECCC----------------------CCEEEEEeHHHHHHHHHhccCC---
Confidence 4677888 9999999999999999999999952 5899999999999987642110
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
....+.++|... +..+.+++++.+++..|. ++.+.++|+++ +++.+|++|+.|++++
T Consensus 56 ---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~----------------~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 56 ---PLVTVGDVMTRD---VVTVSPDTSLEEAAELMLEHGIRRLPVVDD----------------EGRLVGIVTRSDILRA 113 (113)
T ss_pred ---ccccHHHHhcCC---ceecCCCcCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEEEEEHHHhhcC
Confidence 011266677644 788999999999999999 77899999853 2578899999999763
No 163
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.97 E-value=6.5e-09 Score=90.49 Aligned_cols=108 Identities=19% Similarity=0.152 Sum_probs=81.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++++.+|++.|.++++.++||+|+ +++++|+++..|+++++.........
T Consensus 2 ~~~~v~~-~~~l~ea~~~m~~~~~~~~~VvD~----------------------~g~l~Givt~~Dl~~~~~~~~~~~~~ 58 (133)
T cd04592 2 KYIKVSP-TTTLKEALNLMLDEKQSCVLVVDS----------------------DDFLEGILTLGDIQRFLFTNKTTRVQ 58 (133)
T ss_pred CceEECC-CCCHHHHHHHHHHcCCCEEEEECC----------------------CCeEEEEEEHHHHHHHHhhccccccc
Confidence 4688999 999999999999999999999996 36899999999999988642211100
Q ss_pred c-----cccCCchhhhccCC------CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCC
Q 015178 99 E-----SALQDPVSVLLPEA------SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTK 149 (412)
Q Consensus 99 ~-----~~l~~~V~dvm~~~------~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~ 149 (412)
. ......+.++|... ..+++++.+++++.+|++.|. ++++++||+++..+.
T Consensus 59 ~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~ 121 (133)
T cd04592 59 PEDETKQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR 121 (133)
T ss_pred cchhhcccccccHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence 0 00112355565311 134889999999999999999 999999999765443
No 164
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.95 E-value=4.9e-09 Score=101.36 Aligned_cols=103 Identities=21% Similarity=0.211 Sum_probs=87.6
Q ss_pred cchhccccCCCC-eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 8 VGVSDLCIGKPA-LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 8 ~~v~dl~~~~~~-lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
++|+++|. ++ .+++++ ++++.+|++.|.+.++..+||+|. +++++|+++..|+.
T Consensus 155 ~~v~~im~--~~~~~~v~~-~~~v~~a~~~~~~~~~~~~~Vvd~----------------------~g~~~Givt~~dl~ 209 (268)
T TIGR00393 155 VKVKDLMQ--TTDLPLIAP-TTSFKDALLEMSEKRLGSAIVCDE----------------------NNQLVGVFTDGDLR 209 (268)
T ss_pred hhHHHHhC--CCCCCcCCC-CCcHHHHHHHHhhcCCcEEEEEeC----------------------CCCEEEEEEcHHHH
Confidence 67999995 45 888999 999999999999999999999995 36899999999998
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCC
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLP 145 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~ 145 (412)
..+... .....+++++|... +.++.+++++.+|++.|. ++++++||+++
T Consensus 210 ~~~~~~-------~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 259 (268)
T TIGR00393 210 RALLGG-------GSLKSEVRDFMTLG---PKTFKLDALLLEALEFLERRKITSLVVVDD 259 (268)
T ss_pred HHHhcC-------CcccCcHHHhCCCC---CeEECCCCcHHHHHHHHHHcCCcEEEEECC
Confidence 865431 12357899999754 789999999999999999 89999999863
No 165
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.95 E-value=9.7e-09 Score=83.95 Aligned_cols=105 Identities=18% Similarity=0.297 Sum_probs=87.7
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++++++. +.++.+|++.|.+++...+||.+. ++++|+++..||+.. .
T Consensus 2 ~~~~~v~~-~~~~~~~~~~~~~~~~~~~~v~d~-----------------------~~~~g~v~~~~l~~~--~------ 49 (107)
T cd04610 2 RDVITVSP-DNTVKDVIKLIKETGHDGFPVVDN-----------------------GKVVGIVSARDLLGK--D------ 49 (107)
T ss_pred CCcEEECC-CCcHHHHHHHHHHcCCCeeeEeEC-----------------------CEEEEEEEHHHhhcc--C------
Confidence 46788999 999999999999999999999983 589999999998752 0
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
...+++++|... +.++.+++++.++++.|. ++.+++||+++ +++.+|+|+..|+++
T Consensus 50 ----~~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~----------------~g~~~Gvi~~~di~~ 106 (107)
T cd04610 50 ----PDETVEEIMSKD---LVVAVPEMDIMDAARVMFRTGISKLPVVDE----------------NNNLVGIITNTDVIR 106 (107)
T ss_pred ----ccccHHHhCCCC---CeEECCCCCHHHHHHHHHHhCCCeEeEECC----------------CCeEEEEEEHHHhhc
Confidence 124688888644 788999999999999998 88899999753 257899999999986
Q ss_pred H
Q 015178 177 Y 177 (412)
Q Consensus 177 ~ 177 (412)
+
T Consensus 107 ~ 107 (107)
T cd04610 107 S 107 (107)
T ss_pred C
Confidence 3
No 166
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.92 E-value=7.3e-09 Score=107.09 Aligned_cols=132 Identities=23% Similarity=0.281 Sum_probs=104.3
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCC---CceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHIN---QTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~---~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
+|+.+ .+++.++.|+.+|+..+++.+-. ...+-|||++++++|+ +|.++++.-
T Consensus 137 ~Mt~e-~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gv-------------------vsl~~Ll~a---- 192 (451)
T COG2239 137 IMTTE-FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGV-------------------VSLRDLLTA---- 192 (451)
T ss_pred cceee-eEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEE-------------------eeHHHHhcC----
Confidence 68889 99999999999999999853321 1899999999999999 555555431
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM 354 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~ 354 (412)
+++. ..+++|.+.++++.++++..
T Consensus 193 -~~~~-------------------------------------------------------~i~~im~~~~~~V~~~~dqe 216 (451)
T COG2239 193 -EPDE-------------------------------------------------------LLKDLMEDDVVSVLADDDQE 216 (451)
T ss_pred -CcHh-------------------------------------------------------HHHHHhcccceeecccCCHH
Confidence 0000 12346778899999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH----Hhhccc-cC-CCCCcccc
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR----LRSMAK-AE-NPNFCPVW 409 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~----~~~~~~-~~-~~~~~~~~ 409 (412)
++++.+.+++.-.+||||++++++|+||..|++..+.++ .+.|++ .+ .=-+||+|
T Consensus 217 evA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~eDi~~~~G~~~~~~~~~~v~ 277 (451)
T COG2239 217 EVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATEDILRMAGPLDVPDLFASVL 277 (451)
T ss_pred HHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHHHHHHhcCCCCCchhccCHH
Confidence 999999999999999999999999999999999999765 445666 12 22467766
No 167
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.92 E-value=7.9e-09 Score=107.71 Aligned_cols=118 Identities=21% Similarity=0.202 Sum_probs=97.0
Q ss_pred hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
+.+++. ++++++++ ++|+.+|++.|.+++++++||+|.+.. .++++|+|+..|+....
T Consensus 82 ~~~~~~--~~~vtl~~-~~tv~eal~~m~~~~~s~lpVvd~~~~-------------------~~~lvGIVt~rDL~~~~ 139 (450)
T TIGR01302 82 AENGII--SDPVTISP-ETTVADVLELMERKGISGIPVVEDGDM-------------------TGKLVGIITKRDIRFVK 139 (450)
T ss_pred ccCcee--cCceEeCC-CCCHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCeEEEEEEHHHHhhhh
Confidence 455654 57899999 999999999999999999999995310 15899999999996421
Q ss_pred hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178 90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW 168 (412)
Q Consensus 90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i 168 (412)
. ...+++++|.. .+++++.+++++.++++.|. ++.+++||+++ .++++|+
T Consensus 140 -~----------~~~~V~dvm~~--~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe----------------~G~lvGi 190 (450)
T TIGR01302 140 -D----------KGKPVSEVMTR--EEVITVPEGIDLEEALKVLHEHRIEKLPVVDK----------------NGELVGL 190 (450)
T ss_pred -c----------CCCCHHHhhCC--CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC----------------CCcEEEE
Confidence 0 14679999972 13899999999999999999 89999999864 3678999
Q ss_pred ecHHHHHHHH
Q 015178 169 LTQEDLIRYF 178 (412)
Q Consensus 169 ITq~DIv~~l 178 (412)
||..||++.+
T Consensus 191 VT~~DIl~~~ 200 (450)
T TIGR01302 191 ITMKDIVKRR 200 (450)
T ss_pred EEhHHhhhcc
Confidence 9999999976
No 168
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.91 E-value=1.5e-08 Score=84.63 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=89.9
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
++.+++. ++++.+|++.|.+++...+||+|. +++++|+++..|++............
T Consensus 2 ~~~~~~~-~~~l~~a~~~~~~~~~~~~~V~d~----------------------~~~~~G~v~~~~l~~~~~~~~~~~~~ 58 (121)
T cd04584 2 DVVTITP-TTTIAEALELMREHKIRHLPVVDE----------------------EGRLVGIVTDRDLRDASPSPFTTLSE 58 (121)
T ss_pred CCEEECC-CCCHHHHHHHHHHcCCCcccEECC----------------------CCcEEEEEEHHHHHHHhhhhcccchh
Confidence 5678899 999999999999999999999995 36899999999998765421000000
Q ss_pred ---ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHH
Q 015178 99 ---ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDL 174 (412)
Q Consensus 99 ---~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DI 174 (412)
......++.++|... ++++.+++++.++++.|. ++.+.+||.++ ++.+|++|..||
T Consensus 59 ~~~~~~~~~~v~~~~~~~---~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-----------------~~~~Gvv~~~di 118 (121)
T cd04584 59 HELYLLLKMPVKEIMTKD---VITVHPLDTVEEAALLMREHRIGCLPVVED-----------------GRLVGIITETDL 118 (121)
T ss_pred hhhhhhcCcCHHHHhhCC---CeEECCCCcHHHHHHHHHHcCCCeEEEeeC-----------------CEEEEEEEHHHh
Confidence 011235688888754 789999999999999998 78888988742 467899999999
Q ss_pred HH
Q 015178 175 IR 176 (412)
Q Consensus 175 v~ 176 (412)
++
T Consensus 119 ~~ 120 (121)
T cd04584 119 LR 120 (121)
T ss_pred hc
Confidence 75
No 169
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.91 E-value=1.5e-08 Score=83.15 Aligned_cols=99 Identities=12% Similarity=0.063 Sum_probs=83.0
Q ss_pred EEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCccc
Q 015178 21 RSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPES 100 (412)
Q Consensus 21 v~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~~ 100 (412)
+++++ ++++.+|++.|.++++..+||+|. ++++|+++..|+....
T Consensus 4 ~~v~~-~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~----------- 48 (104)
T cd04594 4 IKVKD-YDKVYEAKRIMIENDLLSLPVVDY-----------------------NKFLGAVYLKDIENAT----------- 48 (104)
T ss_pred eEECC-CCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHHhhhc-----------
Confidence 56788 999999999999999999999994 4799999999997631
Q ss_pred ccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 101 ALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 101 ~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|... ..++++++++.++++.|. ++.+++||+++ ++.+|+||+.|+++
T Consensus 49 --~~~~~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-----------------~~~iGvit~~dl~~ 103 (104)
T cd04594 49 --YGDVVDYIVRG---IPYVRLTSTAEEAWEVMMKNKTRWCPVVDD-----------------GKFKGIVTLDSILD 103 (104)
T ss_pred --ccchhhhhhcC---CcEEcCCCCHHHHHHHHHHcCcceEEEEEC-----------------CEEEEEEEHHHhhc
Confidence 13466777544 689999999999999999 88999999742 46789999999874
No 170
>PRK11573 hypothetical protein; Provisional
Probab=98.91 E-value=4e-08 Score=101.31 Aligned_cols=165 Identities=11% Similarity=0.100 Sum_probs=119.5
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|..++|+|+|....++++++. ++|+.++++.+.+++.+.+||++.+ .+.++|++...
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~-~~~~~e~~~~~~~~~~SR~PVy~~~---------------------~D~IiGiv~~k 240 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDI-NDDWKSILRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVR 240 (413)
T ss_pred ccCCCChhhcCCccceEEEEEC-CCCHHHHHHHHHhCCCceEEEEcCC---------------------CCceEEEEEHH
Confidence 3678899999998889999999 9999999999999999999999853 35799999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
|++.++.+.... -...+.+++. |+..|.++.++.++++.|. ++.|=..|+++ -
T Consensus 241 Dll~~~~~~~~~------~~~~l~~~~r----~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE----------------y 294 (413)
T PRK11573 241 EAYRLMTEKKEF------TKENMLRAAD----EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE----------------Y 294 (413)
T ss_pred HHHHHhhccCcC------CHHHHHhhcc----CCeEeCCCCcHHHHHHHHHhcCCeEEEEEec----------------C
Confidence 999865431110 0112334442 3688999999999999999 55555555542 3
Q ss_pred CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI 220 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m 220 (412)
|...|+||.+||+.-+.... ++........+.. ...+ .+.+....++.+.-+.+
T Consensus 295 G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~-~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 295 GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDG-SVIIDGTANVREINKAF 349 (413)
T ss_pred CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCC-EEEEEeeeEHHHHHHHh
Confidence 56789999999999876432 2222111111221 1233 78899999998888877
No 171
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.90 E-value=1e-08 Score=84.61 Aligned_cols=101 Identities=22% Similarity=0.215 Sum_probs=83.1
Q ss_pred EecCCchHHHHHHHHHhcC-----CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 23 LSVSSSTVADALSALKRLN-----ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 23 v~~~~~tv~~A~~~L~~~~-----I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
+++ ++|+.+|++.|.+++ ...+||+|. .++++|+++..|++.. .
T Consensus 2 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vvd~----------------------~~~~~G~v~~~~l~~~--~------ 50 (109)
T cd04606 2 VRE-DWTVGEALEYLRRNADDPETIYYIYVVDE----------------------EGRLLGVVSLRDLLLA--D------ 50 (109)
T ss_pred ccc-cCcHHHHHHHHHhccCcccceeEEEEECC----------------------CCCEEEEEEHHHHhcC--C------
Confidence 456 889999999999888 578999985 3579999999998751 0
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
...+++++|... +..+.+++++.++++.|. ++.+.+||+++ +++.+|+||..|+++
T Consensus 51 ----~~~~v~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~----------------~~~~~Gvit~~dll~ 107 (109)
T cd04606 51 ----PDTPVSDIMDTD---VISVSADDDQEEVARLFEKYDLLALPVVDE----------------EGRLVGIITVDDVID 107 (109)
T ss_pred ----CcchHHHHhCCC---CeEEcCCCCHHHHHHHHHHcCCceeeeECC----------------CCcEEEEEEhHHhhh
Confidence 135688888644 789999999999999999 88889999753 256899999999987
Q ss_pred H
Q 015178 177 Y 177 (412)
Q Consensus 177 ~ 177 (412)
.
T Consensus 108 ~ 108 (109)
T cd04606 108 V 108 (109)
T ss_pred h
Confidence 5
No 172
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=2.2e-08 Score=87.41 Aligned_cols=114 Identities=22% Similarity=0.283 Sum_probs=89.4
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc---cC
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE---NL 95 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~---~l 95 (412)
++++++. ++++.+|++.|.++++.++||++. ++++|+++..|+.+++.... .+
T Consensus 2 ~~~~v~~-~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~dl~~~~~~~~~~~~~ 57 (143)
T cd04634 2 NPITCNA-DDTISDAARLLRENKISGAPVLDG-----------------------GKLVGIVSESDILKLLVTHDPSGNL 57 (143)
T ss_pred CcEEecC-CCCHHHHHHHHHHcCCCcceEeEC-----------------------CeEEEEecHHHHHHHHHhccCcccc
Confidence 5788999 999999999999999999999994 47999999999998775321 00
Q ss_pred CC--c---------------------ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCC
Q 015178 96 LN--P---------------------ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQ 151 (412)
Q Consensus 96 ~~--~---------------------~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~ 151 (412)
.. . ......++.++|... +.++.+++++.+++..|. ++.+++||++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------ 128 (143)
T cd04634 58 WLPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTKK---VITISPDASIEDAAELMVRHKIKRLPVVED------ 128 (143)
T ss_pred ccCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC------
Confidence 00 0 001234677777644 889999999999999999 88889998742
Q ss_pred CCCCCCcccCCCCeeeeecHHHHHH
Q 015178 152 PKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 152 ~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
++.+|+||..|+++
T Consensus 129 -----------~~~~Gvvt~~dl~~ 142 (143)
T cd04634 129 -----------GRLVGIVTRGDIIE 142 (143)
T ss_pred -----------CEEEEEEEHHHhhc
Confidence 45789999999974
No 173
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.85 E-value=1.5e-08 Score=106.53 Aligned_cols=119 Identities=24% Similarity=0.149 Sum_probs=96.4
Q ss_pred hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
..+.++ .+.+++++ ++|+.+|+++|.++++..+||++.+.. .++++|||+..||. +.
T Consensus 98 ~e~g~i--~dpvtv~p-d~tv~eA~~lm~~~~~s~vpVvd~~~~-------------------~gkLvGIVt~~DL~-~~ 154 (495)
T PTZ00314 98 FENGFI--MDPYVLSP-NHTVADVLEIKEKKGFSSILITVDGKV-------------------GGKLLGIVTSRDID-FV 154 (495)
T ss_pred cccccc--cCCeecCC-CCCHHHHHHHHHHcCCcEEEEEeCCcc-------------------CCeEEEEEEHHHHh-hc
Confidence 445554 46789999 999999999999999999999995311 36899999999986 22
Q ss_pred hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178 90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW 168 (412)
Q Consensus 90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i 168 (412)
. ....+|+++|+.. .+++++.+++++.+|+++|. ++++++||+++ ++.++|+
T Consensus 155 ~----------~~~~~V~diMt~~-~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~----------------~g~liGI 207 (495)
T PTZ00314 155 K----------DKSTPVSEVMTPR-EKLVVGNTPISLEEANEVLRESRKGKLPIVND----------------NGELVAL 207 (495)
T ss_pred c----------cCCCCHHHhhCCc-CCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC----------------CCcEEEE
Confidence 1 1246799999741 13889999999999999999 99999999864 3568899
Q ss_pred ecHHHHHHHH
Q 015178 169 LTQEDLIRYF 178 (412)
Q Consensus 169 ITq~DIv~~l 178 (412)
||.+||++..
T Consensus 208 IT~~DIl~~~ 217 (495)
T PTZ00314 208 VSRSDLKKNR 217 (495)
T ss_pred EEehHhhhcc
Confidence 9999999874
No 174
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.85 E-value=2.6e-08 Score=82.45 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=81.4
Q ss_pred ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcc
Q 015178 116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPIN 194 (412)
Q Consensus 116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~ 194 (412)
.+..+.+++++.++.+.|. .+..++||.+... .+++.+|+|+..|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------------~~~~~~G~v~~~dl~~~~~~-------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-------------ESPRLVGYILRSQLVVALKN-------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCC-------------CCCEEEEEEeHHHHHHHHHH--------------
Confidence 3678899999999999998 6788888875310 03578899999999887642
Q ss_pred cccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccC
Q 015178 195 SLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFN 249 (412)
Q Consensus 195 ~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~ 249 (412)
+|.++ +.++.+++++.++++.|.+++. ..+||++ +|+++|+||..||.
T Consensus 56 ---~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~~pVv~-~~~~~Gvvt~~dl~ 103 (105)
T cd04591 56 ---YIDPS-PFTVSPRTSLEKVHQLFRKLGL--RHLLVVD-EGRLVGIITRKDLL 103 (105)
T ss_pred ---hccCC-CceECCCCcHHHHHHHHHHcCC--CEEEEEE-CCeEEEEEEhhhhh
Confidence 46667 8899999999999999999999 9999995 68999997655553
No 175
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.78 E-value=2.1e-08 Score=73.62 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=51.2
Q ss_pred hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
|+++|. ++++++++ ++|+.+|++.|.++++.++||+|+ +++++|+++..||++++
T Consensus 1 v~~~m~--~~~~~v~~-~~~l~~~~~~~~~~~~~~~~V~d~----------------------~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 1 VGDIMT--PPPITVSP-DDSLEEALEIMRKNGISRLPVVDE----------------------DGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHHSB--SSSEEEET-TSBHHHHHHHHHHHTSSEEEEEST----------------------TSBEEEEEEHHHHHHHH
T ss_pred CeECCc--CCCEEEcC-cCcHHHHHHHHHHcCCcEEEEEec----------------------CCEEEEEEEHHHHHhhh
Confidence 578885 58999999 999999999999999999999996 36899999999999987
Q ss_pred h
Q 015178 90 C 90 (412)
Q Consensus 90 ~ 90 (412)
.
T Consensus 56 ~ 56 (57)
T PF00571_consen 56 L 56 (57)
T ss_dssp H
T ss_pred h
Confidence 5
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.75 E-value=9.8e-08 Score=79.60 Aligned_cols=112 Identities=22% Similarity=0.167 Sum_probs=86.0
Q ss_pred CeEEEecCCchHHHHHHHHHhcC-CceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 19 ALRSLSVSSSTVADALSALKRLN-ESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~-I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++.++++ ++++.+|++.|.+++ +..+||+|+ ++++|+++..|++..+.... .
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~~l~~~~~~~~---~ 54 (119)
T cd04598 2 PAPTVSP-DTTVNDVLERFERDPDLSALAVVDD-----------------------GRPVGLIMREALMELLSTPY---G 54 (119)
T ss_pred CcCccCC-CCcHHHHHHHHHhCCCccEEEEEEC-----------------------CeeEEEEEHHHHHHHHhchh---h
Confidence 4567888 999999999999887 999999995 37999999999987654310 0
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCce---eeecCCCCCCCCCCCCCCcccCCCCeeeeecHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQN---LVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQED 173 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~R---l~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~D 173 (412)
.......++.++|... +.++.+++++.+++..|. ++.++ .+|+++ .++.+|+||..|
T Consensus 55 ~~~~~~~~v~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~----------------~~~~~Gvvs~~d 115 (119)
T cd04598 55 RALYGKKPVSEVMDPD---PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE----------------EGRYLGIGTVKD 115 (119)
T ss_pred HHHHcCCcHHHhcCCC---cEEecCCCCHHHHHHHHHcCCcccccccEEEee----------------CCeEEEEEEHHH
Confidence 0001245799999755 889999999999999998 66543 355532 357899999999
Q ss_pred HHH
Q 015178 174 LIR 176 (412)
Q Consensus 174 Iv~ 176 (412)
+++
T Consensus 116 i~~ 118 (119)
T cd04598 116 LLR 118 (119)
T ss_pred Hhc
Confidence 975
No 177
>PRK11573 hypothetical protein; Provisional
Probab=98.74 E-value=2.5e-07 Score=95.42 Aligned_cols=130 Identities=13% Similarity=0.139 Sum_probs=101.4
Q ss_pred CCCcccccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
.+++++ +|++ ..+++++.+.++.++++.+.+++. +.+||.+++ ..++|+ +..+|+
T Consensus 186 ~~~v~e--iMtPr~~i~~l~~~~~~~e~~~~~~~~~~--SR~PVy~~~~D~IiGi-------------------v~~kDl 242 (413)
T PRK11573 186 KVTVDD--IMVPRNEIVGIDINDDWKSILRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVREA 242 (413)
T ss_pred CCChhh--cCCccceEEEEECCCCHHHHHHHHHhCCC--ceEEEEcCCCCceEEE-------------------EEHHHH
Confidence 556666 5663 239999999999999999999999 999999765 589999 678887
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+.+...+... ....+ .++ .++++.+
T Consensus 243 l~~~~~~~~~--------------~~~~l----------------------------------------~~~-~r~~~~V 267 (413)
T PRK11573 243 YRLMTEKKEF--------------TKENM----------------------------------------LRA-ADEIYFV 267 (413)
T ss_pred HHHhhccCcC--------------CHHHH----------------------------------------Hhh-ccCCeEe
Confidence 7532110000 00000 011 2578899
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
+++.++.++++.|.+++.|=.-|||+-|..+|+||..||+..+.......
T Consensus 268 pe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 268 PEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred CCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcc
Confidence 99999999999999999999999999999999999999999999776543
No 178
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.72 E-value=1.5e-07 Score=77.14 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=84.8
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++.. ++++.+|++.|.+++.+.+||++. +++++|+++..|++... .
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~g~v~~~~l~~~~---~----- 50 (106)
T cd04638 2 NVVYVTL-PGTRDDVLELLKEYKVSGVPVVKK----------------------SGELVGIITRKDLLRNP---E----- 50 (106)
T ss_pred CcEEECC-CCCHHHHHHHHHHcCCCeEEEEcC----------------------CCcEEEEEEHHHHHhcc---c-----
Confidence 4788888 999999999999999999999995 35799999999997521 0
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
..++.++|... +.++.+++++.+++..|. ++.+.+||+++ ++.+|+||..|+++
T Consensus 51 ----~~~~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----------------~~~~G~it~~d~~~ 105 (106)
T cd04638 51 ----EEQLALLMTRD---PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-----------------GKLVGIVTVADIVR 105 (106)
T ss_pred ----cchHHHHhcCC---CceECCCCCHHHHHHHHHHcCCCEEEEEEC-----------------CEEEEEEEHHHhhc
Confidence 13477777644 788999999999999999 88999999752 35789999999874
No 179
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.65 E-value=1.4e-07 Score=92.89 Aligned_cols=119 Identities=16% Similarity=0.248 Sum_probs=104.4
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.+|.|+|..-.+...+.. +++|++=.++--+.|.+.-||+|. ..+++|+|+++|++.
T Consensus 188 ~~Vedi~~P~~~~~yL~~-~d~v~d~~~l~~kt~~sRfPVvn~----------------------~~kvvGvVt~rDv~~ 244 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRE-TDTVEDWLDLVEKTGHSRFPVVNR----------------------SMKVVGVVTMRDVLD 244 (432)
T ss_pred eeHHHhccccccceeccc-cccHHHHHHHHHHcCCCccceecc----------------------cceEEEEEEehhhhc
Confidence 358899976667899999 999999999999999999999995 468999999999876
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
.- -.+++.-+|+++ +++|.+.+|+..+...|. .|+.=+||+++ +.+.+
T Consensus 245 ~~------------~~t~ieKVMtkn---p~tv~~~tsVAsvaq~MiwE~iem~PVv~~----------------n~~ll 293 (432)
T COG4109 245 KK------------PSTTIEKVMTKN---PITVRAKTSVASVAQMMIWEGIEMLPVVDS----------------NNTLL 293 (432)
T ss_pred CC------------CCccHHHHhccC---CeeecccchHHHHHHHHHhccceeeeEEcC----------------CceEE
Confidence 41 147899999987 899999999999999999 99999999974 35789
Q ss_pred eeecHHHHHHHHHH
Q 015178 167 CWLTQEDLIRYFLN 180 (412)
Q Consensus 167 ~iITq~DIv~~l~~ 180 (412)
|+||+.|+++.+..
T Consensus 294 GiitR~dvlk~lq~ 307 (432)
T COG4109 294 GIITRQDVLKSLQM 307 (432)
T ss_pred EEEEHHHHHHHHHH
Confidence 99999999998865
No 180
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.62 E-value=5.1e-07 Score=91.66 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=88.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHH
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRL 283 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~ 283 (412)
.....++.+..++++.|..++. ..+.|+|+++++.|. ++..++..+...+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~-------- 302 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERV--DSLYVVDRQNKLVGV-------------------VDVESIKQARKKAQ-------- 302 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCC--ceEEEEcCCCCEEEE-------------------EeHHHHHHHhhcCC--------
Confidence 4566778899999999999998 999999999999999 55666655431100
Q ss_pred HHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHc
Q 015178 284 VKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALAR 363 (412)
Q Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~ 363 (412)
.+.+.+...+.++.++++|.+++..|.++
T Consensus 303 ---------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (363)
T TIGR01186 303 ---------------------------------------------------GLQDVLIDDIYTVDAGTLLRETVRKVLKA 331 (363)
T ss_pred ---------------------------------------------------chhhhhccCCceECCCCcHHHHHHHHHhC
Confidence 01123445678899999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 364 RVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 364 ~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+.. +||||++|+++|+||+.++++++...
T Consensus 332 ~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 332 GIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred CCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 999 99999999999999999999998764
No 181
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.60 E-value=1.2e-06 Score=90.89 Aligned_cols=163 Identities=17% Similarity=0.143 Sum_probs=116.7
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|.+++++++|....+++.++. +.+++++.+.+.+++.+.+||++.+ .+.++|++...
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~-~~~~~~~~~~~~~~~~SR~PV~~~~---------------------~D~iiGiv~~K 259 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDL-TDTVEELIELILESGHSRIPVYDGD---------------------LDNIIGIVHVK 259 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcC-CCCHHHHHHHHHhCCCCeeeEEcCC---------------------CCcEEEEEEHH
Confidence 3678999999998789999999 9999999999999999999999932 36799999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
|++.++...+. . ......+ .|++.|.+..++.++++.|. ++.|=..|+++ -
T Consensus 260 dll~~~~~~~~-~---~~~~~~~--------~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE----------------y 311 (429)
T COG1253 260 DLLRALLDGQS-D---LDLRVLV--------RPPLFVPETLSLSDLLEEFREERTHMAIVVDE----------------Y 311 (429)
T ss_pred HHHHHHhcCcc-c---cchhhcc--------cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc----------------C
Confidence 99999876322 0 0011112 14789999999999999999 55555555542 2
Q ss_pred CCeeeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI 220 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m 220 (412)
|...|+||.+||+.-+.... ++.+......+-. ...+ -+.+....++.+..+.+
T Consensus 312 G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~---~~~~-~~~v~G~~~l~e~~~~l 366 (429)
T COG1253 312 GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQ---RDDD-GWLVDGRVPLEELEELL 366 (429)
T ss_pred CCeEEEeEHHHHHHHHhCCCcCcccccccccceE---ecCC-cEEEeccccHHHHHHHh
Confidence 57889999999999886432 1121100111111 1133 36788888887766665
No 182
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=1.1e-06 Score=90.20 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=83.7
Q ss_pred EeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHH
Q 015178 207 IQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQ 286 (412)
Q Consensus 207 v~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~ 286 (412)
..++.+..+|++.|..++. ..+.|+|++++++|. ++..++......+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~-------------------~~~~~~~~~~~~~~----------- 337 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDR--EYGYVIERGNKFVGA-------------------VSIDSLKTALTQQQ----------- 337 (400)
T ss_pred cCCCCCHHHHHHHHHhcCC--ceEEEEcCCCcEEEE-------------------EeHHHHHhhhhcCC-----------
Confidence 4467789999999999999 999999999999999 55666544221000
Q ss_pred HhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCc
Q 015178 287 RLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVS 366 (412)
Q Consensus 287 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ih 366 (412)
...+.+.....++.++++|.+++..|.++...
T Consensus 338 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (400)
T PRK10070 338 ------------------------------------------------GLDAALIDAPLAVDAQTPLSELLSHVGQAPCA 369 (400)
T ss_pred ------------------------------------------------chhhhhccCCceeCCCCCHHHHHHHHHhCCCc
Confidence 00112345578899999999999999997766
Q ss_pred EEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 367 YVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 367 rl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+||||++|+++|+||+.++++++..
T Consensus 370 -~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 370 -VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred -EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 9999999999999999999999865
No 183
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.40 E-value=4.1e-06 Score=86.97 Aligned_cols=127 Identities=20% Similarity=0.267 Sum_probs=100.2
Q ss_pred CCCcccccCCCC-CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDD-AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~-~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
.+++++ +|++ ..++.+..+.++.++.+.+.+++. |.+||.++ ...++|+ +..+|+
T Consensus 205 ~~~v~e--iMtPR~~i~~l~~~~~~~~~~~~~~~~~~--SR~PV~~~~~D~iiGi-------------------v~~Kdl 261 (429)
T COG1253 205 DRTVRE--IMTPRTDIVALDLTDTVEELIELILESGH--SRIPVYDGDLDNIIGI-------------------VHVKDL 261 (429)
T ss_pred CcEeee--EeeecccEEEEcCCCCHHHHHHHHHhCCC--CeeeEEcCCCCcEEEE-------------------EEHHHH
Confidence 556666 5663 349999999999999999999998 99999993 3589999 678888
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+.+...+. . . . .. ... -++++.+
T Consensus 262 l~~~~~~~----------------~-~-------------------------~------~~--------~~~-~~~~~~V 284 (429)
T COG1253 262 LRALLDGQ----------------S-D-------------------------L------DL--------RVL-VRPPLFV 284 (429)
T ss_pred HHHHhcCc----------------c-c-------------------------c------ch--------hhc-ccCCeEe
Confidence 77431100 0 0 0 00 000 1378999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
++..++.+++++|.+++.|=--|+|+-|...|+||..||+..+.-.+..
T Consensus 285 pet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~d 333 (429)
T COG1253 285 PETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPD 333 (429)
T ss_pred cCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcC
Confidence 9999999999999999999999999999999999999999999976553
No 184
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.30 E-value=1.1e-06 Score=88.18 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=86.5
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
++.++|+.++.++++....+++ +++||.++. +||||+|| .+|+-.. .
T Consensus 118 p~v~sp~~tvg~v~~~k~~~gF--~g~pvTe~g~~~~KLvG~vt-------------------srdi~f~-~-------- 167 (503)
T KOG2550|consen 118 PIVISPTTTVGEVKEAKEKHGF--SGIPVTEDGKRGSKLVGIIT-------------------SRDIQFL-E-------- 167 (503)
T ss_pred CcccCCcccchhhhhhcccccc--cccccccCCcccceeEEEEe-------------------hhhhhhh-h--------
Confidence 6778999999999999999999 999999653 49999955 4444221 0
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m 360 (412)
+. .....++|+...++...+.+|.++=+.+
T Consensus 168 ---------------------~~-----------------------------~~~~~~vmt~~~~~~~~gi~l~~~neiL 197 (503)
T KOG2550|consen 168 ---------------------DN-----------------------------SLLVSDVMTKNPVTGAQGITLKEANEIL 197 (503)
T ss_pred ---------------------cc-----------------------------cchhhhhcccccccccccccHHHHHHHH
Confidence 00 0012356888789999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
.+++-.++||||++|.||-||+++|+.+.
T Consensus 198 ~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 198 KKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred HhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 99999999999999999999999999875
No 185
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.23 E-value=3.7e-06 Score=57.59 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=43.5
Q ss_pred ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
+.++.+++++.++++.|.+++.+++||++++++++|+++..|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 57789999999999999999999999999888999999999998764
No 186
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.22 E-value=1.3e-05 Score=79.98 Aligned_cols=165 Identities=12% Similarity=0.176 Sum_probs=115.6
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
|..+||+|+|....++..++. +++.++.++.+...--..+|||..+ -+..+||+..+|
T Consensus 197 Le~~tV~DIMvpR~~i~~id~-d~~~e~iv~ql~~s~HtRiplyr~~---------------------~DnIiGvlh~r~ 254 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDI-DDPWEEIVRQLLHSPHTRIPLYRDD---------------------LDNIIGVLHVRD 254 (423)
T ss_pred cccceeeeeeccccceeeecC-CCCHHHHHHHHhhCCCCceeeecCC---------------------hhHhhhhhhHHH
Confidence 568999999998889999999 9999999999999999999999854 246999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDS 164 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~ 164 (412)
+++.+.+.++.. +..+..+.. .+|.|+.+++|.+-+.-|.++-+|+-++.++ =|.
T Consensus 255 llr~l~e~~~~~------k~d~~~~a~----epyFVPe~Tpl~~QL~~F~~~k~hialVVDE---------------YG~ 309 (423)
T COG4536 255 LLRLLNEKNEFT------KEDILRAAD----EPYFVPEGTPLSDQLVAFQRNKKHIALVVDE---------------YGD 309 (423)
T ss_pred HHHHhhccCccc------HhHHHHHhc----CCeecCCCCcHHHHHHHHHHhcceEEEEEec---------------cCc
Confidence 999998754321 111222222 3699999999999999999555666444442 256
Q ss_pred eeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHH
Q 015178 165 EYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLI 220 (412)
Q Consensus 165 ~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m 220 (412)
+.|+||-+||+.=+. +.+.+.......++ .-..++-+-+..+.++.|.=+.|
T Consensus 310 i~GLVTLEDIlEEIV---Gdftde~d~~~~ev-~~q~dgs~iidGs~~iRdlNr~l 361 (423)
T COG4536 310 IQGLVTLEDILEEIV---GDFTDEHDTLAKEV-IPQSDGSFIIDGSANVRDLNRAL 361 (423)
T ss_pred EEeeeeHHHHHHHHh---ccccccCcccchhh-cccCCCcEEEeCCCcHHHHHHhc
Confidence 789999999998664 22322212222221 11223345566677765544433
No 187
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.22 E-value=2.4e-06 Score=71.82 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=49.5
Q ss_pred ccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 336 ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 336 a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
+.++|.+++.++.+++++.++++.|.+++.+.+||+|++|+++|+||..||.+
T Consensus 60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 56788889999999999999999999999999999999899999999999864
No 188
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.17 E-value=4e-06 Score=86.99 Aligned_cols=113 Identities=18% Similarity=0.279 Sum_probs=90.9
Q ss_pred CchhhhccCCCCceEecCCCCcHHHHHHHHh-c-----CCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 104 DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-G-----GVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 104 ~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~-----gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
..++.+|+.. ++++.++.|+.+++..+. . .+..+.|++ +.+++.|++|-++++..
T Consensus 132 ~taG~~Mt~e---~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD----------------~~~~L~Gvvsl~~Ll~a 192 (451)
T COG2239 132 DTAGRIMTTE---FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD----------------EKGKLLGVVSLRDLLTA 192 (451)
T ss_pred hhhhccceee---eEEeccCcCHHHHHHHHHHhcccccccceEEEEC----------------CccceEEEeeHHHHhcC
Confidence 4577788766 999999999999998887 2 244455554 33578999999998632
Q ss_pred HHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 178 FLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 178 l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
-+...+++ +|.+. ++++.+++...++.+++.++++ -++||||++++++|+||..|+..
T Consensus 193 ----------~~~~~i~~--im~~~-~~~V~~~~dqeevA~~~~~ydl--~a~PVVd~~~~LiG~itiDDiid 250 (451)
T COG2239 193 ----------EPDELLKD--LMEDD-VVSVLADDDQEEVARLFEKYDL--LAVPVVDEDNRLIGIITIDDIID 250 (451)
T ss_pred ----------CcHhHHHH--Hhccc-ceeecccCCHHHHHHHHHHhCC--eecceECCCCceeeeeeHHHHHH
Confidence 11334444 68888 9999999999999999999999 99999999999999988777765
No 189
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.93 E-value=1.8e-05 Score=79.45 Aligned_cols=163 Identities=12% Similarity=0.072 Sum_probs=114.4
Q ss_pred HHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc-------cCCCcccccC-Cchh
Q 015178 36 ALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE-------NLLNPESALQ-DPVS 107 (412)
Q Consensus 36 ~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~-------~l~~~~~~l~-~~V~ 107 (412)
.|.++.-+..|.+.++ ..-||+.+.-.+++..+ |-++..++.. +.|+
T Consensus 54 ~ltr~itl~tPlvsSp-------------------------MDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK 108 (503)
T KOG2550|consen 54 KLTRNITLNTPLVSSP-------------------------MDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVK 108 (503)
T ss_pred hhhhcccccCceeccC-------------------------CcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHH
Confidence 4556667777999864 33488888888776421 1111111111 2232
Q ss_pred hhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCC
Q 015178 108 VLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLS 186 (412)
Q Consensus 108 dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~ 186 (412)
..-...-+..+...|++++.++++... +|+..+||..+.. -+.+++|+||-+|+ .|+.++
T Consensus 109 ~~~~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~-------------~~~KLvG~vtsrdi-~f~~~~----- 169 (503)
T KOG2550|consen 109 NYENGFINNPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGK-------------RGSKLVGIITSRDI-QFLEDN----- 169 (503)
T ss_pred HhhcccccCCcccCCcccchhhhhhcccccccccccccCCc-------------ccceeEEEEehhhh-hhhhcc-----
Confidence 222111123678899999999999888 9999999875432 24689999999997 454321
Q ss_pred CCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 187 PTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 187 ~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
...+.+ +|+++ .++.....++.++=+++.+++- ..+||||++|.+|-+|+..||++
T Consensus 170 ---~~~~~~--vmt~~-~~~~~~gi~l~~~neiL~~~kk--Gkl~iv~~~gelva~~~rtDl~k 225 (503)
T KOG2550|consen 170 ---SLLVSD--VMTKN-PVTGAQGITLKEANEILKKIKK--GKLPVVDDKGELVAMLSRTDLMK 225 (503)
T ss_pred ---cchhhh--hcccc-cccccccccHHHHHHHHHhhhc--CCcceeccCCceeeeeehhhhhh
Confidence 122333 68888 7889999999999999999977 99999999999999999999966
No 190
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.82 E-value=7.6e-05 Score=70.28 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=98.8
Q ss_pred CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC-cEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG-RLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
.+++..|-... .+++..+.++.+.+..|.+..- |..||+.++. .+.|+ |-++||+.|
T Consensus 68 ~vrDiMIPRSQ-M~~l~~~~~l~~~l~~iiesaH--SRfPVi~edkD~v~GI-------------------L~AKDLL~~ 125 (293)
T COG4535 68 RVRDIMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHVEGI-------------------LLAKDLLPF 125 (293)
T ss_pred hHhhhcccHHH-heeccccCCHHHHHHHHHHhcc--ccCCcccCCchhhhhh-------------------hhHHHHHHH
Confidence 34543333345 9999999999999999999987 9999998764 89998 889999987
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
+... .+ +| . .++ +=+|.+.++++
T Consensus 126 ~~~~--~~---------------------------------~F-------------~--------i~~-lLRPav~VPES 148 (293)
T COG4535 126 MRSD--AE---------------------------------PF-------------D--------IKE-LLRPAVVVPES 148 (293)
T ss_pred hcCC--cc---------------------------------cc-------------c--------HHH-hcccceecccc
Confidence 5311 00 00 0 011 12678889999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
-.+...+..+..++.|--.|||+-|-+-|.||..|||..+.-.++
T Consensus 149 Krvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIE 193 (293)
T COG4535 149 KRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIE 193 (293)
T ss_pred hhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999986655
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.70 E-value=0.00049 Score=70.03 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=86.6
Q ss_pred eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcc
Q 015178 20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPE 99 (412)
Q Consensus 20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~ 99 (412)
.+.... +.+..+|++.|..+++.++.|+|. ++++.|.++..++..|+...
T Consensus 252 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~g~~~~~~~~~~~~~~------- 301 (363)
T TIGR01186 252 PITKTA-DKGPRSALQLMRDERVDSLYVVDR----------------------QNKLVGVVDVESIKQARKKA------- 301 (363)
T ss_pred ceeecC-CCCHHHHHHHHHhcCCceEEEEcC----------------------CCCEEEEEeHHHHHHHhhcC-------
Confidence 345566 778999999999999999999996 46899999999998886531
Q ss_pred cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178 100 SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 178 (412)
Q Consensus 100 ~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l 178 (412)
..+.+.+... +.++.++++|.+++..|. .+.. +||+++ +++.+|+||..++++.+
T Consensus 302 ----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~----------------~~~~~g~i~~~~~~~~~ 357 (363)
T TIGR01186 302 ----QGLQDVLIDD---IYTVDAGTLLRETVRKVLKAGIK-VPVVDE----------------DQRLVGIVTRGSLVDAL 357 (363)
T ss_pred ----CchhhhhccC---CceECCCCcHHHHHHHHHhCCCC-EEEECC----------------CCcEEEEEEHHHHHHHH
Confidence 2355555433 678999999999999999 5655 999864 36789999999999998
Q ss_pred HH
Q 015178 179 LN 180 (412)
Q Consensus 179 ~~ 180 (412)
..
T Consensus 358 ~~ 359 (363)
T TIGR01186 358 YD 359 (363)
T ss_pred Hh
Confidence 65
No 192
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=0.0005 Score=70.86 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=84.8
Q ss_pred EEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCcccc
Q 015178 22 SLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNPESA 101 (412)
Q Consensus 22 ~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~~~~ 101 (412)
.... +.+..+|++.|.+++..++.|+|. .+++.|+++..|+..+..+
T Consensus 289 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~g~~~~~~~~~~~~~---------- 335 (400)
T PRK10070 289 RKTP-GFGPRSALKLLQDEDREYGYVIER----------------------GNKFVGAVSIDSLKTALTQ---------- 335 (400)
T ss_pred ccCC-CCCHHHHHHHHHhcCCceEEEEcC----------------------CCcEEEEEeHHHHHhhhhc----------
Confidence 3446 678999999999999999999996 3689999999999876542
Q ss_pred cCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
..++.+.+... +.++.++++|.+++..|...-..+||+++ +++.+|+||..++++.+..
T Consensus 336 -~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------------~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 336 -QQGLDAALIDA---PLAVDAQTPLSELLSHVGQAPCAVPVVDE----------------DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred -CCchhhhhccC---CceeCCCCCHHHHHHHHHhCCCcEEEECC----------------CCcEEEEEEHHHHHHHHHh
Confidence 12355555433 67999999999999999954455888863 4678999999999999865
No 193
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.63 E-value=0.00011 Score=61.72 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=48.9
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.+++|+|. +++.+++. ++++.+|++.|.++++..+||+|. +++++|+|+..||..
T Consensus 58 ~~v~dim~--~~~~~v~~-~~~l~~a~~~~~~~~~~~lpVvd~----------------------~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVIN--RKPVTARP-NDPLREALNLMHEHNIRTLPVVDD----------------------DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcC--CCCCEECC-cCcHHHHHHHHHHcCCCEEEEECC----------------------CCeEEEEEEHHHhhc
Confidence 67999995 56888999 999999999999999999999995 368999999999863
No 194
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=97.60 E-value=0.00079 Score=67.47 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=102.6
Q ss_pred CCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
.-+++| +|. ++++..+..+++..+.++.+...-. +.+|+-.++ ..++|+ +-.+|+
T Consensus 199 ~~tV~D--IMvpR~~i~~id~d~~~e~iv~ql~~s~H--tRiplyr~~~DnIiGv-------------------lh~r~l 255 (423)
T COG4536 199 NLTVSD--IMVPRNEIIGIDIDDPWEEIVRQLLHSPH--TRIPLYRDDLDNIIGV-------------------LHVRDL 255 (423)
T ss_pred cceeee--eeccccceeeecCCCCHHHHHHHHhhCCC--CceeeecCChhHhhhh-------------------hhHHHH
Confidence 345665 455 3349999999999999999998877 999998764 379998 788888
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+++....+. + +.. .+.| .-.+++.+
T Consensus 256 lr~l~e~~~---~--------------------~k~-----------------------d~~~---------~a~epyFV 280 (423)
T COG4536 256 LRLLNEKNE---F--------------------TKE-----------------------DILR---------AADEPYFV 280 (423)
T ss_pred HHHhhccCc---c--------------------cHh-----------------------HHHH---------HhcCCeec
Confidence 875422110 0 000 0000 11468999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccccCCC
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENP 403 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~~~~~ 403 (412)
+..+++..-+.+|.+++-|-=-|||+=|.+.|+||+.|||..+.-.+.++....++
T Consensus 281 Pe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ 336 (423)
T COG4536 281 PEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAK 336 (423)
T ss_pred CCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccch
Confidence 99999999999999999999999999999999999999999998777655544443
No 195
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00013 Score=76.99 Aligned_cols=150 Identities=17% Similarity=0.197 Sum_probs=93.8
Q ss_pred cCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-----CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178 197 NIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-----GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM 271 (412)
Q Consensus 197 ~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-----g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 271 (412)
++|+++ |++++.-+.+...++.++..+- .|.||||+. +++.|+|= .+.++...
T Consensus 586 ev~~~p-vi~l~~~ekV~~Iv~vLk~t~H--ngFPVvd~~~~~~~~~l~GlIL-------------------Rshl~vlL 643 (762)
T KOG0474|consen 586 EVMSKP-VICLNRVEKVAVIVDVLKSTNH--NGFPVVDEPPSNEAGRLHGLIL-------------------RSHLLVLL 643 (762)
T ss_pred hhccCC-eEEEechhhHHHHHHHHHhcCc--CCCccccCCCCccchhhhHHHH-------------------HHHHHHHH
Confidence 468888 9999999999999999999876 999999973 47778742 22222211
Q ss_pred cCC------CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178 272 DCG------RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI 345 (412)
Q Consensus 272 ~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv 345 (412)
..+ ....++.. +.+. ..+. +.+. .. .-++....+.....+.+. ..+|...++
T Consensus 644 ~~~~f~~~~~~~~~~~~--~~~~---~~~d----~a~r------~~-----~i~dv~lt~~e~~~yvDl--~p~~n~sPy 701 (762)
T KOG0474|consen 644 KKRVFVEESRSTFDLPV--RRKF---TFRD----FAKR------EP-----SIEDVHLTSEEMEMYVDL--HPFMNPSPY 701 (762)
T ss_pred HhhhhhccCccccCcch--hhcC---CHHH----hhhc------CC-----chhhhhcchHhHhhcccc--ccccCCCCc
Confidence 000 00000000 0000 0000 0000 00 000000000011122222 257888999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
|+.+++|+..+...+.+-+.+|+.||+..++.+||+|+.|+.+.-
T Consensus 702 tV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 702 TVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR 746 (762)
T ss_pred ccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence 999999999999999999999999999999999999999998654
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00018 Score=67.85 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=113.9
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
...|+|+|+....+++++. +.++.+-+..+++..=+.-||...+ .+.+.||+-..|++
T Consensus 66 dl~vrDiMIPRSQM~~l~~-~~~l~~~l~~iiesaHSRfPVi~ed---------------------kD~v~GIL~AKDLL 123 (293)
T COG4535 66 DLRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHVEGILLAKDLL 123 (293)
T ss_pred HhhHhhhcccHHHheeccc-cCCHHHHHHHHHHhccccCCcccCC---------------------chhhhhhhhHHHHH
Confidence 4579999998778999999 9999999999999999999999865 46899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
.|+..+... ..+.+++. |.+.|++.-.|...++-|. +.-|=..|+++ =|.+
T Consensus 124 ~~~~~~~~~--------F~i~~lLR----Pav~VPESKrvd~lLkeFR~~RnHMAIViDE----------------fGgV 175 (293)
T COG4535 124 PFMRSDAEP--------FDIKELLR----PAVVVPESKRVDRLLKEFRSQRNHMAIVIDE----------------FGGV 175 (293)
T ss_pred HHhcCCccc--------ccHHHhcc----cceecccchhHHHHHHHHHhhcCceEEEEec----------------cCCe
Confidence 998753221 22666664 3477888888888889999 66666666643 2456
Q ss_pred eeeecHHHHHHHHHHcc-CcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHH
Q 015178 166 YCWLTQEDLIRYFLNCI-GLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFA 216 (412)
Q Consensus 166 v~iITq~DIv~~l~~~~-~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a 216 (412)
-|.||-+||+..+..-+ +++..--...|+. ..+. -++|.+-+++.+-
T Consensus 176 sGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~-~~~VrALT~IedF 223 (293)
T COG4535 176 SGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRH-TWRVRALTEIEDF 223 (293)
T ss_pred eeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCC-ceEEEecccHHHH
Confidence 68999999999886532 2232211222332 2334 6777777775443
No 197
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00045 Score=72.96 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=99.5
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
..++.+++|+|. +++++++. -+.|+.....|...+=.+-||+|....+ ..+++.|++=..
T Consensus 578 ~mr~L~a~ev~~--~pvi~l~~-~ekV~~Iv~vLk~t~HngFPVvd~~~~~-----------------~~~~l~GlILRs 637 (762)
T KOG0474|consen 578 YMRNLTAGEVMS--KPVICLNR-VEKVAVIVDVLKSTNHNGFPVVDEPPSN-----------------EAGRLHGLILRS 637 (762)
T ss_pred HhhhhhHhhhcc--CCeEEEec-hhhHHHHHHHHHhcCcCCCccccCCCCc-----------------cchhhhHHHHHH
Confidence 357889999995 58999999 9999999999999999999999964321 126899999998
Q ss_pred HHHHHhhhc----c---cCC-Ccc------c-cc-CCchhhhc--------c--CC--CCc-eEecCCCCcHHHHHHHHh
Q 015178 84 DIISFLCKE----E---NLL-NPE------S-AL-QDPVSVLL--------P--EA--SGV-IRHLEPSASLLEAVDLLL 134 (412)
Q Consensus 84 Dil~~l~~~----~---~l~-~~~------~-~l-~~~V~dvm--------~--~~--~~~-~~tV~~~~sL~~ai~lm~ 134 (412)
-++..+.+. + +.. +.. . +- ..++.|+- . .. .+| .++|.+++++..+..+|.
T Consensus 638 hl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR 717 (762)
T KOG0474|consen 638 HLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFR 717 (762)
T ss_pred HHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHH
Confidence 888866531 0 000 000 0 00 01233331 0 01 122 889999999999999999
Q ss_pred -cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178 135 -GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 178 (412)
Q Consensus 135 -~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l 178 (412)
-|+|++.|+... ...+||+|+.|+.++=
T Consensus 718 ~lGLRhLlVv~~~----------------~~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 718 QLGLRHLLVVPKT----------------NRVVGILTRKDLARYR 746 (762)
T ss_pred HhcceeEEEecCC----------------CceeEEEehhhhhhHH
Confidence 899999887532 3458899999999874
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.28 E-value=0.0008 Score=45.57 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=41.7
Q ss_pred eEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 20 LRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 20 lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
.++++. ++++.++++.|.++++..+||+++ +++++|+++..|++..+
T Consensus 2 ~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~----------------------~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSP-DTTLEEALELLREHGIRRLPVVDE----------------------EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecC-CCcHHHHHHHHHHhCCCcccEECC----------------------CCeEEEEEEHHHHHHhh
Confidence 467888 999999999999999999999995 25799999999998764
No 199
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0089 Score=63.51 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=85.8
Q ss_pred EEEEeCC-CcHHHHHHHHHhcCCCCceeEEEcCC--CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 204 IFAIQYD-EPAAFAIPLIAQSHINQTSVALVDEE--GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 204 v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd~~--g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
..+++.+ +++.+...+|.+... ++.|||=++ .+++|++...||.. +..++++...+...
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~--sgfpvvl~~~sq~lvGfv~rr~l~~---------~i~~ar~~q~~~~~------- 619 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDF--SGFPVVLSEDSQRLVGFVLRRNLFL---------AILNARKIQSFIVT------- 619 (696)
T ss_pred heeccccceeHHHHHHHHhhccc--CCceEEEccccceeEEEEchHHHHH---------HHhhhcccccccee-------
Confidence 6666666 999999999999988 999997443 59999955444332 11222222221100
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccc-ccccccCccccccccCCceEeCCCCcHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA-QSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQ 359 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~ 359 (412)
++. .+.+. .| +.. .+.. ++ --+++|.-.++|++-.++...++.+
T Consensus 620 ----------~~~-----~f~~~-------~~------~~~-~~~~~~~------~lk~il~~tp~tv~d~tp~~~v~~~ 664 (696)
T KOG0475|consen 620 ----------TSI-----YFNDP-------SP------SAV-AGIPSRL------DLKDILDMTPFTVTDLTPMETVVDL 664 (696)
T ss_pred ----------ccc-----ccCCC-------Cc------ccc-CCCCCCc------CceeeccCCcccccccCcHHHHHHH
Confidence 000 01110 00 000 0000 11 1235777889999999999999999
Q ss_pred HHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 360 ALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 360 m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
+.+-+++.+-| +.+|++.|+||..|+|+..
T Consensus 665 F~~lg~~~~~v-~~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 665 FRKLGLRQILV-TKNGILLGIITKKDCLRHT 694 (696)
T ss_pred HHhhCceEEEE-ccCCeeEeeeehHHHHHhh
Confidence 99999999975 5669999999999999864
No 200
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.02 Score=60.97 Aligned_cols=126 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred cccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhc
Q 015178 13 LCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKE 92 (412)
Q Consensus 13 l~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~ 92 (412)
.+...+.++.++..+.|++|...+|.+...++-||+-+.. .++++|+++.+|+..-+...
T Consensus 551 p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~--------------------sq~lvGfv~rr~l~~~i~~a 610 (696)
T KOG0475|consen 551 PCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED--------------------SQRLVGFVLRRNLFLAILNA 610 (696)
T ss_pred hhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccc--------------------cceeEEEEchHHHHHHHhhh
Confidence 3344446999999569999999999999999999997542 47999999999998766521
Q ss_pred ccC----CCcccccC-------------CchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178 93 ENL----LNPESALQ-------------DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP 154 (412)
Q Consensus 93 ~~l----~~~~~~l~-------------~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~ 154 (412)
... ........ ...+++|... +.+|.-.++...++.+|. -|++...|.
T Consensus 611 r~~q~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~t---p~tv~d~tp~~~v~~~F~~lg~~~~~v~----------- 676 (696)
T KOG0475|consen 611 RKIQSFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDMT---PFTVTDLTPMETVVDLFRKLGLRQILVT----------- 676 (696)
T ss_pred ccccccceecccccCCCCccccCCCCCCcCceeeccCC---cccccccCcHHHHHHHHHhhCceEEEEc-----------
Confidence 110 00000111 1255555544 778888899988999999 799999885
Q ss_pred CCCcccCCCCeeeeecHHHHHHHH
Q 015178 155 SLKSTFHNDSEYCWLTQEDLIRYF 178 (412)
Q Consensus 155 ~~~~~~~~~~~v~iITq~DIv~~l 178 (412)
++|++.|+||..|++++.
T Consensus 677 ------~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 677 ------KNGILLGIITKKDCLRHT 694 (696)
T ss_pred ------cCCeeEeeeehHHHHHhh
Confidence 347788999999999874
No 201
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.28 E-value=0.091 Score=52.28 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=42.2
Q ss_pred cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
..++.++.+++.+.+.+..+.+...+ ++|||++++++|+|++..++.++..
T Consensus 334 ~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 334 IDDVLTVDADTPLSEILARIRQAPCP-VAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred cccccccCccchHHHHHHHHhcCCCc-eeEEcCCCcEEEEecHHHHHHHHhc
Confidence 35577788888888888877766654 6799999999999999999999864
No 202
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=94.82 E-value=0.046 Score=56.06 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=43.2
Q ss_pred cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
..+..++++++++.+++..+.+.. +-++|+|+ |+++|+|++.++|.++..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTG-GAILLVEN-GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCC-CCeEEeeC-CeEEEEEeHHHHHHHHhc
Confidence 346789999999999999888766 44889986 999999999999998863
No 203
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=91.09 E-value=1.3 Score=44.33 Aligned_cols=156 Identities=18% Similarity=0.194 Sum_probs=89.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhc---c
Q 015178 17 KPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKE---E 93 (412)
Q Consensus 17 ~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~---~ 93 (412)
++-+|++++ -+.+|+++= ..+-+.. .|++|-+=|...|+..-+.+ +
T Consensus 215 ~KTIvFitH---DLdEAlriG-----~rIaimk-----------------------dG~ivQ~Gtp~eIl~~PAndYV~~ 263 (386)
T COG4175 215 KKTIVFITH---DLDEALRIG-----DRIAIMK-----------------------DGEIVQVGTPEEILLNPANDYVRD 263 (386)
T ss_pred CCeEEEEec---CHHHHHhcc-----ceEEEec-----------------------CCeEEEeCCHHHHHcCccHHHHHH
Confidence 356888888 788888741 2233333 47888888888887743321 0
Q ss_pred cCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178 94 NLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE 172 (412)
Q Consensus 94 ~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~ 172 (412)
-..+....---+..++|.. ..+...-.+...-..++..+. .+...+.+.. ..++.+|+++..
T Consensus 264 Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~----------------~~~~~~g~v~~~ 326 (386)
T COG4175 264 FVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD----------------RGNKFVGVVSID 326 (386)
T ss_pred HHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh----------------ccCceeeEEecc
Confidence 0000011111236666652 122222222233334455554 2322322221 224466777777
Q ss_pred HHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178 173 DLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDIS 244 (412)
Q Consensus 173 DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS 244 (412)
++++. .+... +.++.+++++.+.+..+.+.. ..+||||++|+++|+|+
T Consensus 327 ~~~~~--------------------~~~~~-~~~v~~d~~~~~~~~~~~~~~---~p~aVvde~~r~vG~i~ 374 (386)
T COG4175 327 SLVKA--------------------ALIDD-VLTVDADTPLSEILARIRQAP---CPVAVVDEDGRYVGIIS 374 (386)
T ss_pred chhcc--------------------ccccc-ccccCccchHHHHHHHHhcCC---CceeEEcCCCcEEEEec
Confidence 76543 13344 788999999988888887775 47899999999999954
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=89.62 E-value=0.54 Score=45.66 Aligned_cols=38 Identities=32% Similarity=0.249 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHH
Q 015178 352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRV 389 (412)
Q Consensus 352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~ 389 (412)
...+++..++..+..-+||||++|+++|+||+.|++..
T Consensus 271 ~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 271 VDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE 308 (309)
T ss_pred hhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence 34448888999999999999999999999999999864
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=80.17 E-value=2.3 Score=46.75 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=51.1
Q ss_pred ccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCC--cEEEEEehHHHHHHHHH
Q 015178 336 ARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDC--TLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 336 a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~--~lvGIVT~~DIL~~l~~ 392 (412)
+.++|-+++..++.++|..|.-+.+..+.++-+|+||+.. -|+|.|.++.+.+.+-.
T Consensus 590 VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 590 VEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 6789999999999999999998888877799999999754 79999999999988865
No 206
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=77.73 E-value=2.9 Score=42.95 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=32.3
Q ss_pred EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178 204 IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDIS 244 (412)
Q Consensus 204 v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS 244 (412)
+.++++++++.+++..+.+... .+||+|+ |+++|+|+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~-~~~~g~~~ 371 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGG---AILLVEN-GRIVGVIG 371 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCC---CeEEeeC-CeEEEEEe
Confidence 7889999999999999988765 5899986 99999954
No 207
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=65.49 E-value=11 Score=36.86 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178 27 SSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF 88 (412)
Q Consensus 27 ~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~ 88 (412)
...-.+|+..+...++..+||+|++ ++++|.++..||+.+
T Consensus 269 ~~~~~~~ls~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 269 GFVDRDALSDFLARGRSVLPVVDED----------------------GRPLGTVTRADLLDE 308 (309)
T ss_pred chhhHHHHHHHHhcCCceeEEECCC----------------------CcEeeEEEHHHHhhh
Confidence 3455679999999999999999974 689999999999875
No 208
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=61.63 E-value=9.8 Score=40.54 Aligned_cols=111 Identities=15% Similarity=0.184 Sum_probs=76.6
Q ss_pred cccccchhccccCCCCeEEEecCCchHH-HHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVA-DALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~-~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
-|....++|+|..-..+..+.. +..+. +......+++.+++||.+..- ...+|..=.
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~-n~~l~~~~~~~i~~~g~sripv~~~~~---------------------~~~i~~~L~ 257 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDA-NTKLDRETVGEIVKHGYSRIPVYEQEP---------------------KNKIGGLLV 257 (498)
T ss_pred HHHHHHHHHhccchhhheeecc-ccccchHHHhhHhhcCcceeeeccCcc---------------------cchhhHHHH
Confidence 3456678899976667888888 77777 667777799999999999531 334444333
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHhcCCceeeecCC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLLGGVQNLVIPLP 145 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~~gv~Rl~V~~~ 145 (412)
...+.|+....++ -..+++..+-.. +.-++.++++.+.++.|.+|-.+..|+..
T Consensus 258 ~~~~~~~~~~~~~------~~~~v~~~~~~~---l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 258 MNLLRLLQVEVPL------EPLPVSESALLR---LPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred hhhhhhhcccccc------ccccchhhhccc---cccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 3344554332111 135677776544 78899999999999999988777777643
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=59.08 E-value=16 Score=40.55 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=43.9
Q ss_pred CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
.++-..+.+||..+=.++-=-++||.+|.+- |||+|||++.++=+|+..
T Consensus 811 aPfQLve~TSL~K~HtLFSLLgL~~AYVT~~-GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 811 APFQLVEGTSLYKVHTLFSLLGLNHAYVTSC-GRLVGVVALKELRKAIEN 859 (931)
T ss_pred CceeeeccchHHHHHHHHHHhccchhhhccc-CcEEEEEEHHHHHHHHHh
Confidence 4677888999999999999999999999986 899999999999888776
No 210
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=42.35 E-value=51 Score=25.85 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=21.9
Q ss_pred CcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 365 VSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 365 ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
...|-|||++|..+|++++.+-++...+.-.
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~~l 42 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEKGL 42 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHTT-
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHcCC
Confidence 4567789999999999999998877665433
No 211
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=31.57 E-value=28 Score=28.06 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.7
Q ss_pred hcCCCCceeEEEcCCCcEeee
Q 015178 222 QSHINQTSVALVDEEGRLVGD 242 (412)
Q Consensus 222 ~~~i~~s~vpVVd~~g~lvG~ 242 (412)
..+- |+-||+|.+|++||+
T Consensus 102 ~~G~--SGgpv~~~~G~vvGi 120 (120)
T PF13365_consen 102 RPGS--SGGPVFDSDGRVVGI 120 (120)
T ss_dssp STTT--TTSEEEETTSEEEEE
T ss_pred CCCc--EeHhEECCCCEEEeC
Confidence 3677 999999999999995
No 212
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=30.86 E-value=76 Score=25.38 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEEEehH
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFT 384 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~ 384 (412)
.+.++.+.+.+-+.+||.+++++++|.+...
T Consensus 32 ~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~ 62 (117)
T PF13673_consen 32 PEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE 62 (117)
T ss_dssp HHHHHHHHCTCCCEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECCEEEEEEEEc
Confidence 3445667777679999999999999998854
No 213
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.97 E-value=61 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=12.9
Q ss_pred ceeEEEcCCCcEeeeec
Q 015178 228 TSVALVDEEGRLVGDIS 244 (412)
Q Consensus 228 s~vpVVd~~g~lvG~IS 244 (412)
...||.|.+|+++|.++
T Consensus 92 ~~~PV~d~~g~viG~V~ 108 (116)
T PF14827_consen 92 AFAPVYDSDGKVIGVVS 108 (116)
T ss_dssp EEEEEE-TTS-EEEEEE
T ss_pred EEEeeECCCCcEEEEEE
Confidence 67899999999999965
No 214
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=23.70 E-value=78 Score=26.29 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=12.7
Q ss_pred EEEEEeCCCcEEEEEeh
Q 015178 367 YVWVVEEDCTLVGIVTF 383 (412)
Q Consensus 367 rl~VVD~~~~lvGIVT~ 383 (412)
..||.|.+|+++|+|+-
T Consensus 93 ~~PV~d~~g~viG~V~V 109 (116)
T PF14827_consen 93 FAPVYDSDGKVIGVVSV 109 (116)
T ss_dssp EEEEE-TTS-EEEEEEE
T ss_pred EEeeECCCCcEEEEEEE
Confidence 46999888999999974
No 215
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=23.44 E-value=78 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=20.8
Q ss_pred CcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178 365 VSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 365 ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~ 394 (412)
...|-|||++|..+|+++..+-|+...+.-
T Consensus 19 ~~~Vrli~~dG~~lgv~~~~eAl~~A~~~~ 48 (177)
T PRK00028 19 AREVRLIGDDGEQLGIVSTREALELAEEAG 48 (177)
T ss_pred CCEEEEECCCCcCCCceeHHHHHHHHHHcC
Confidence 345667777777778888877776665543
No 216
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=22.33 E-value=78 Score=23.81 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=16.4
Q ss_pred CcEEEEEeCCCcEEEEEeh
Q 015178 365 VSYVWVVEEDCTLVGIVTF 383 (412)
Q Consensus 365 ihrl~VVD~~~~lvGIVT~ 383 (412)
-++++|++++++++|.+..
T Consensus 2 ~~~~~~~~~~~~ivG~~~~ 20 (79)
T PF13508_consen 2 KERFFVAEDDGEIVGFIRL 20 (79)
T ss_dssp TEEEEEEEETTEEEEEEEE
T ss_pred ccEEEEEEECCEEEEEEEE
Confidence 3678899999999999986
No 217
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=21.02 E-value=1.2e+02 Score=30.75 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=26.1
Q ss_pred cCCcEEEEEeCCCcEEEEEeh------------------HHHHHHHHHHHhhccc
Q 015178 363 RRVSYVWVVEEDCTLVGIVTF------------------TGMLRVIRDRLRSMAK 399 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~------------------~DIL~~l~~~~~~~~~ 399 (412)
.+-..=|++|.+|++|||.|. .+.++.+.+++.+...
T Consensus 197 ~GnSGGpl~n~~G~vIGI~~~~~~~~~~~~~~g~~faIP~~~~~~vl~~l~~~g~ 251 (351)
T TIGR02038 197 AGNSGGALINTNGELVGINTASFQKGGDEGGEGINFAIPIKLAHKIMGKIIRDGR 251 (351)
T ss_pred CCCCcceEECCCCeEEEEEeeeecccCCCCccceEEEecHHHHHHHHHHHhhcCc
Confidence 444556999999999999874 2356777766665443
No 218
>PRK10898 serine endoprotease; Provisional
Probab=20.82 E-value=1.1e+02 Score=31.08 Aligned_cols=38 Identities=24% Similarity=0.165 Sum_probs=27.3
Q ss_pred HcCCcEEEEEeCCCcEEEEEehH-------------------HHHHHHHHHHhhccc
Q 015178 362 ARRVSYVWVVEEDCTLVGIVTFT-------------------GMLRVIRDRLRSMAK 399 (412)
Q Consensus 362 ~~~ihrl~VVD~~~~lvGIVT~~-------------------DIL~~l~~~~~~~~~ 399 (412)
..+-..=|++|.+|++|||.|.. +.++.+++++.+-..
T Consensus 196 ~~GnSGGPl~n~~G~vvGI~~~~~~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~G~ 252 (353)
T PRK10898 196 NHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPTQLATKIMDKLIRDGR 252 (353)
T ss_pred CCCCCcceEECCCCeEEEEEEEEecccCCCCcccceEEEEchHHHHHHHHHHhhcCc
Confidence 44555669999999999998741 667777777655443
No 219
>PHA00673 acetyltransferase domain containing protein
Probab=20.32 E-value=1.6e+02 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.012 Sum_probs=28.9
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFT 384 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~ 384 (412)
.+..++.+.|.+..-+.+.|..++|++||.+.+.
T Consensus 40 ~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~ 73 (154)
T PHA00673 40 APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLL 73 (154)
T ss_pred chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEE
Confidence 4567779999999999999998889999976654
Done!