Query 015178
Match_columns 412
No_of_seqs 187 out of 1389
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t4n_C Nuclear protein SNF4; C 100.0 3.7E-37 1.3E-41 301.6 22.2 281 3-392 25-320 (323)
2 2qrd_G Protein C1556.08C; AMPK 100.0 9.4E-35 3.2E-39 285.8 24.2 296 3-410 17-331 (334)
3 3kh5_A Protein MJ1225; AMPK, A 100.0 1.9E-34 6.5E-39 275.2 21.8 268 8-390 3-279 (280)
4 2v8q_E 5'-AMP-activated protei 100.0 1.7E-34 6E-39 283.7 22.0 282 2-392 29-323 (330)
5 3ddj_A CBS domain-containing p 100.0 1.7E-34 5.9E-39 279.3 16.8 266 6-395 18-288 (296)
6 2yzq_A Putative uncharacterize 100.0 3.7E-33 1.3E-37 267.1 16.2 277 8-392 1-279 (282)
7 3ddj_A CBS domain-containing p 99.9 1.4E-23 4.7E-28 202.7 13.5 191 102-393 18-215 (296)
8 3kh5_A Protein MJ1225; AMPK, A 99.9 8.9E-23 3E-27 194.2 17.9 181 116-391 13-204 (280)
9 4esy_A CBS domain containing m 99.9 1.3E-21 4.3E-26 174.7 12.3 145 191-392 18-162 (170)
10 2yzq_A Putative uncharacterize 99.9 2.2E-21 7.4E-26 185.3 14.2 184 6-244 58-269 (282)
11 3t4n_C Nuclear protein SNF4; C 99.9 4.3E-21 1.5E-25 187.4 14.1 179 17-243 121-309 (323)
12 2v8q_E 5'-AMP-activated protei 99.8 1.3E-20 4.5E-25 184.7 13.5 202 104-391 35-250 (330)
13 2qrd_G Protein C1556.08C; AMPK 99.8 4.2E-19 1.5E-23 174.0 16.2 191 14-271 113-313 (334)
14 4esy_A CBS domain containing m 99.8 1.2E-19 4E-24 161.9 5.0 134 2-180 12-162 (170)
15 3k6e_A CBS domain protein; str 99.8 9.4E-19 3.2E-23 154.8 10.0 127 192-394 16-144 (156)
16 3lv9_A Putative transporter; C 99.8 2.3E-18 7.8E-23 149.5 12.0 122 190-393 22-146 (148)
17 3lhh_A CBS domain protein; str 99.8 2E-18 7E-23 154.4 11.9 124 190-395 41-167 (172)
18 3lfr_A Putative metal ION tran 99.8 1.6E-18 5.4E-23 148.9 9.7 121 198-396 8-131 (136)
19 3i8n_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 145.1 11.8 122 190-391 5-128 (130)
20 3jtf_A Magnesium and cobalt ef 99.8 4E-18 1.4E-22 144.9 11.8 120 191-393 5-127 (129)
21 3fv6_A YQZB protein; CBS domai 99.8 9.7E-18 3.3E-22 147.6 14.1 135 191-404 17-156 (159)
22 3kpb_A Uncharacterized protein 99.8 5E-18 1.7E-22 141.9 11.5 115 198-392 6-120 (122)
23 2yzi_A Hypothetical protein PH 99.8 7.5E-18 2.6E-22 144.0 12.8 130 190-399 6-136 (138)
24 2ef7_A Hypothetical protein ST 99.7 1.2E-17 4.2E-22 141.7 13.3 127 191-397 4-130 (133)
25 3nqr_A Magnesium and cobalt ef 99.7 3.9E-18 1.3E-22 144.4 10.1 116 198-392 8-126 (127)
26 2nyc_A Nuclear protein SNF4; b 99.7 8.6E-18 2.9E-22 144.1 10.9 128 190-392 7-141 (144)
27 3gby_A Uncharacterized protein 99.7 8E-18 2.7E-22 142.5 10.4 123 191-393 5-127 (128)
28 2rih_A Conserved protein with 99.7 2.3E-17 7.7E-22 141.9 13.3 122 191-392 5-128 (141)
29 4gqw_A CBS domain-containing p 99.7 6.4E-18 2.2E-22 146.0 9.9 139 192-395 6-146 (152)
30 3hf7_A Uncharacterized CBS-dom 99.7 9.2E-18 3.1E-22 143.1 10.4 119 198-393 7-128 (130)
31 2p9m_A Hypothetical protein MJ 99.7 1.9E-17 6.4E-22 141.3 11.9 125 190-393 7-137 (138)
32 3oco_A Hemolysin-like protein 99.7 7.4E-18 2.5E-22 147.4 8.6 124 191-396 20-147 (153)
33 1yav_A Hypothetical protein BS 99.7 1.4E-17 4.8E-22 146.2 10.1 143 188-405 11-155 (159)
34 3fhm_A Uncharacterized protein 99.7 1.1E-17 3.8E-22 148.2 9.4 134 184-395 17-153 (165)
35 3k6e_A CBS domain protein; str 99.7 3.4E-17 1.2E-21 144.8 12.4 132 6-183 13-145 (156)
36 2uv4_A 5'-AMP-activated protei 99.7 3.7E-17 1.3E-21 142.7 12.3 117 201-392 29-151 (152)
37 3kxr_A Magnesium transporter, 99.7 1.4E-16 4.8E-21 147.2 16.2 137 190-410 53-198 (205)
38 3lqn_A CBS domain protein; csg 99.7 4E-17 1.4E-21 141.6 11.7 130 192-396 16-147 (150)
39 2o16_A Acetoin utilization pro 99.7 4.2E-17 1.4E-21 143.8 11.7 133 192-395 6-138 (160)
40 3sl7_A CBS domain-containing p 99.7 1.7E-17 5.7E-22 147.8 8.8 150 198-396 9-160 (180)
41 1pbj_A Hypothetical protein; s 99.7 5.2E-17 1.8E-21 136.0 11.1 117 198-392 6-122 (125)
42 2emq_A Hypothetical conserved 99.7 9.5E-17 3.3E-21 140.1 12.5 131 190-395 10-142 (157)
43 3k2v_A Putative D-arabinose 5- 99.7 5.7E-17 1.9E-21 141.0 10.9 120 190-388 27-148 (149)
44 1o50_A CBS domain-containing p 99.7 9.6E-17 3.3E-21 140.7 12.2 137 192-393 17-154 (157)
45 1y5h_A Hypothetical protein RV 99.7 1.8E-17 6E-22 140.8 7.2 123 191-392 8-131 (133)
46 1pvm_A Conserved hypothetical 99.7 9.4E-17 3.2E-21 144.8 12.3 125 191-392 9-133 (184)
47 3ocm_A Putative membrane prote 99.7 7.4E-17 2.5E-21 145.0 11.4 124 190-396 35-161 (173)
48 3ctu_A CBS domain protein; str 99.7 4.3E-17 1.5E-21 142.5 9.4 131 191-397 15-147 (156)
49 2rc3_A CBS domain; in SITU pro 99.7 1.1E-16 3.8E-21 136.3 10.9 118 198-393 11-132 (135)
50 3l2b_A Probable manganase-depe 99.7 3.4E-16 1.2E-20 147.4 15.2 201 102-391 5-243 (245)
51 1vr9_A CBS domain protein/ACT 99.7 2.5E-16 8.5E-21 146.0 13.3 114 198-393 18-131 (213)
52 3lv9_A Putative transporter; C 99.7 5.2E-16 1.8E-20 134.5 14.1 126 4-180 19-145 (148)
53 3oi8_A Uncharacterized protein 99.7 2.4E-16 8.2E-21 138.5 11.6 116 190-387 37-155 (156)
54 3i8n_A Uncharacterized protein 99.7 1.8E-16 6E-21 134.7 10.3 126 4-179 2-128 (130)
55 3lqn_A CBS domain protein; csg 99.7 2.3E-16 7.8E-21 136.8 11.2 135 4-183 11-146 (150)
56 3hf7_A Uncharacterized CBS-dom 99.7 2.3E-16 7.7E-21 134.5 10.8 125 7-179 1-126 (130)
57 2pfi_A Chloride channel protei 99.7 6E-16 2E-20 135.6 12.6 129 191-394 13-149 (164)
58 3fv6_A YQZB protein; CBS domai 99.7 5.4E-16 1.8E-20 136.4 12.0 131 2-181 11-145 (159)
59 2ef7_A Hypothetical protein ST 99.7 1E-15 3.5E-20 129.8 13.3 127 5-183 1-128 (133)
60 4fry_A Putative signal-transdu 99.7 3.1E-16 1.1E-20 137.1 9.9 118 201-395 21-138 (157)
61 3lhh_A CBS domain protein; str 99.6 7.9E-16 2.7E-20 137.5 12.5 126 4-180 38-164 (172)
62 2p9m_A Hypothetical protein MJ 99.6 1.2E-15 4.2E-20 130.0 12.9 129 1-180 1-136 (138)
63 3oco_A Hemolysin-like protein 99.6 6.2E-16 2.1E-20 135.1 11.0 125 5-180 17-143 (153)
64 2j9l_A Chloride channel protei 99.6 5.6E-16 1.9E-20 138.6 10.7 151 191-396 11-169 (185)
65 3l2b_A Probable manganase-depe 99.6 1.5E-15 5.3E-20 142.9 14.2 200 7-250 6-240 (245)
66 3nqr_A Magnesium and cobalt ef 99.6 5.2E-16 1.8E-20 131.2 9.4 123 7-179 2-125 (127)
67 3fhm_A Uncharacterized protein 99.6 8.7E-16 3E-20 135.8 10.6 129 4-180 20-150 (165)
68 3jtf_A Magnesium and cobalt ef 99.6 1.3E-15 4.5E-20 129.2 11.2 123 6-180 3-126 (129)
69 3ctu_A CBS domain protein; str 99.6 1.1E-15 3.7E-20 133.5 10.9 135 4-184 11-146 (156)
70 3kpb_A Uncharacterized protein 99.6 1.6E-15 5.6E-20 126.4 11.2 119 8-180 1-120 (122)
71 1vr9_A CBS domain protein/ACT 99.6 1.4E-15 4.8E-20 140.9 11.9 161 8-237 13-174 (213)
72 3lfr_A Putative metal ION tran 99.6 8E-16 2.7E-20 131.9 8.5 125 7-180 2-127 (136)
73 2rc3_A CBS domain; in SITU pro 99.6 3.5E-15 1.2E-19 126.9 12.1 128 4-180 1-131 (135)
74 2rih_A Conserved protein with 99.6 7.5E-15 2.6E-19 126.0 13.8 122 7-180 4-128 (141)
75 3gby_A Uncharacterized protein 99.6 2.1E-15 7E-20 127.6 10.1 122 7-180 4-126 (128)
76 2d4z_A Chloride channel protei 99.6 6.1E-15 2.1E-19 140.7 14.4 53 339-392 194-246 (250)
77 4gqw_A CBS domain-containing p 99.6 1.6E-15 5.4E-20 130.8 9.3 133 6-180 3-143 (152)
78 2yzi_A Hypothetical protein PH 99.6 5.9E-15 2E-19 125.9 12.7 126 4-180 3-129 (138)
79 4fry_A Putative signal-transdu 99.6 4.7E-15 1.6E-19 129.6 12.3 125 8-181 7-136 (157)
80 1pbj_A Hypothetical protein; s 99.6 5.7E-15 1.9E-19 123.5 12.2 121 8-180 1-122 (125)
81 2oux_A Magnesium transporter; 99.6 2.9E-15 9.9E-20 145.2 11.8 122 189-394 135-261 (286)
82 1yav_A Hypothetical protein BS 99.6 4.9E-15 1.7E-19 129.9 11.9 134 4-182 10-144 (159)
83 2emq_A Hypothetical conserved 99.6 6.5E-15 2.2E-19 128.4 12.5 135 4-183 7-142 (157)
84 3ocm_A Putative membrane prote 99.6 5.1E-15 1.7E-19 133.0 11.9 124 5-180 33-157 (173)
85 2o16_A Acetoin utilization pro 99.6 7.9E-15 2.7E-19 129.1 12.4 131 6-181 3-136 (160)
86 2yvy_A MGTE, Mg2+ transporter 99.6 6.6E-15 2.3E-19 141.8 12.9 120 190-393 134-258 (278)
87 2uv4_A 5'-AMP-activated protei 99.6 6.9E-15 2.4E-19 128.1 11.6 127 5-179 20-150 (152)
88 3sl7_A CBS domain-containing p 99.6 2E-15 6.9E-20 134.2 8.2 134 7-182 3-158 (180)
89 1y5h_A Hypothetical protein RV 99.6 1.7E-15 5.9E-20 128.4 7.3 126 3-179 3-130 (133)
90 2nyc_A Nuclear protein SNF4; b 99.6 1.2E-14 4E-19 124.4 12.4 131 4-180 4-141 (144)
91 3k2v_A Putative D-arabinose 5- 99.6 7.2E-15 2.4E-19 127.6 10.4 120 8-176 28-148 (149)
92 2j9l_A Chloride channel protei 99.6 1.1E-14 3.9E-19 130.1 10.9 138 3-181 6-166 (185)
93 1o50_A CBS domain-containing p 99.6 4.1E-14 1.4E-18 123.8 14.1 129 6-180 14-153 (157)
94 3oi8_A Uncharacterized protein 99.6 5.4E-15 1.8E-19 129.8 8.4 121 4-175 34-155 (156)
95 2pfi_A Chloride channel protei 99.6 2.7E-14 9.1E-19 125.0 12.2 136 5-182 10-149 (164)
96 1pvm_A Conserved hypothetical 99.5 2.7E-14 9.3E-19 128.5 11.4 125 7-180 8-133 (184)
97 2d4z_A Chloride channel protei 99.5 6E-14 2E-18 133.8 11.6 132 5-179 10-245 (250)
98 2zy9_A Mg2+ transporter MGTE; 99.5 9.9E-14 3.4E-18 143.7 14.1 120 190-393 154-278 (473)
99 3org_A CMCLC; transporter, tra 99.5 6E-15 2E-19 158.0 3.9 171 190-393 452-626 (632)
100 3pc3_A CG1753, isoform A; CBS, 99.5 3.6E-14 1.2E-18 148.8 9.5 125 190-394 383-513 (527)
101 3kxr_A Magnesium transporter, 99.5 1.4E-13 4.8E-18 127.1 12.2 121 5-181 51-175 (205)
102 3usb_A Inosine-5'-monophosphat 99.4 3.4E-13 1.2E-17 140.9 10.7 114 198-392 118-234 (511)
103 2oux_A Magnesium transporter; 99.4 9.8E-13 3.4E-17 127.4 10.5 120 6-181 135-260 (286)
104 1zfj_A Inosine monophosphate d 99.4 1.5E-12 5.2E-17 135.2 12.6 114 198-392 95-211 (491)
105 4af0_A Inosine-5'-monophosphat 99.4 4.8E-14 1.7E-18 145.4 0.6 110 199-390 144-256 (556)
106 3pc3_A CG1753, isoform A; CBS, 99.4 1E-12 3.5E-17 137.7 10.5 130 5-181 381-512 (527)
107 2yvy_A MGTE, Mg2+ transporter 99.3 2.6E-12 8.8E-17 123.6 10.7 120 5-180 132-257 (278)
108 1me8_A Inosine-5'-monophosphat 99.3 7.5E-14 2.6E-18 145.7 -0.1 115 199-393 103-222 (503)
109 4fxs_A Inosine-5'-monophosphat 99.3 3.2E-13 1.1E-17 140.6 3.2 112 198-390 94-207 (496)
110 1vrd_A Inosine-5'-monophosphat 99.3 1.4E-13 4.7E-18 143.2 0.1 114 198-392 100-215 (494)
111 4avf_A Inosine-5'-monophosphat 99.3 2.2E-13 7.7E-18 141.6 0.1 112 198-391 93-206 (490)
112 1jcn_A Inosine monophosphate d 99.2 3.2E-13 1.1E-17 141.2 -4.5 132 170-391 96-232 (514)
113 2zy9_A Mg2+ transporter MGTE; 99.2 4.4E-11 1.5E-15 123.8 11.4 119 6-180 153-277 (473)
114 3org_A CMCLC; transporter, tra 99.2 2E-11 7E-16 130.6 8.3 123 103-250 452-621 (632)
115 3usb_A Inosine-5'-monophosphat 99.2 2.6E-10 8.8E-15 119.1 15.8 157 18-237 121-279 (511)
116 3ghd_A A cystathionine beta-sy 99.2 7.1E-11 2.4E-15 90.5 7.7 66 19-113 1-66 (70)
117 1me8_A Inosine-5'-monophosphat 99.2 1.4E-11 4.9E-16 128.4 4.7 171 6-238 94-266 (503)
118 1zfj_A Inosine monophosphate d 99.1 1E-09 3.5E-14 113.9 15.6 120 9-180 91-211 (491)
119 2cu0_A Inosine-5'-monophosphat 99.1 9.5E-12 3.3E-16 129.2 0.0 110 198-391 98-207 (486)
120 1vrd_A Inosine-5'-monophosphat 99.0 1.9E-10 6.6E-15 119.5 4.8 119 9-180 96-215 (494)
121 4fxs_A Inosine-5'-monophosphat 99.0 3.5E-10 1.2E-14 117.7 5.8 114 106-251 91-206 (496)
122 3ghd_A A cystathionine beta-sy 98.9 1.6E-09 5.5E-14 82.9 7.2 48 344-392 2-49 (70)
123 4avf_A Inosine-5'-monophosphat 98.9 6E-10 2E-14 115.8 4.9 117 9-179 89-206 (490)
124 4af0_A Inosine-5'-monophosphat 98.9 2.1E-10 7.3E-15 118.4 0.0 109 19-178 147-256 (556)
125 3fio_A A cystathionine beta-sy 98.8 8.4E-09 2.9E-13 77.4 6.6 49 343-392 1-49 (70)
126 1jcn_A Inosine monophosphate d 98.8 4.4E-10 1.5E-14 117.4 -0.9 118 106-251 110-230 (514)
127 2cu0_A Inosine-5'-monophosphat 98.7 1E-08 3.6E-13 106.3 5.0 153 10-235 95-248 (486)
128 3fio_A A cystathionine beta-sy 98.7 5.4E-08 1.9E-12 72.8 7.7 66 19-113 1-66 (70)
129 1tif_A IF3-N, translation init 52.0 22 0.00074 27.1 4.8 30 365-394 13-42 (78)
130 1svj_A Potassium-transporting 35.1 16 0.00056 31.3 2.0 36 352-388 120-155 (156)
131 3sti_A Protease DEGQ; serine p 34.4 29 0.00099 31.8 3.7 40 363-402 184-239 (245)
132 3lgi_A Protease DEGS; stress-s 33.8 38 0.0013 30.5 4.4 44 363-406 173-235 (237)
133 3v67_A Sensor protein CPXA; PA 30.7 89 0.003 26.1 5.8 52 352-403 36-94 (138)
134 2lrn_A Thiol:disulfide interch 26.9 1.2E+02 0.004 24.3 6.0 45 354-398 99-144 (152)
135 3by8_A Sensor protein DCUS; hi 21.8 44 0.0015 27.5 2.3 28 368-395 111-138 (142)
136 3fan_A Non-structural protein; 20.8 49 0.0017 29.9 2.4 23 363-385 124-146 (213)
137 3mgd_A Predicted acetyltransfe 20.1 1.2E+02 0.0039 23.6 4.5 32 352-383 37-68 (157)
No 1
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=100.00 E-value=3.7e-37 Score=301.59 Aligned_cols=281 Identities=20% Similarity=0.229 Sum_probs=215.9
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
.||..++|+|+|..+.++++++. ++|+.+|+++|.+++++++||||++ .++++|++|.
T Consensus 25 ~~l~~~~~~d~m~~~~~~v~v~~-~~sv~~a~~~m~~~~~~~~pV~d~~---------------------~~~lvGilt~ 82 (323)
T 3t4n_C 25 KFLNSKTSYDVLPVSYRLIVLDT-SLLVKKSLNVLLQNSIVSAPLWDSK---------------------TSRFAGLLTT 82 (323)
T ss_dssp HHHHHSBHHHHSCSEEEEEEEET-TSBHHHHHHHHHHTTCSCEEEEETT---------------------TTEEEEEECH
T ss_pred HHHHhCchHhhCCCCCcEEEEcC-CCcHHHHHHHHHHcCCceEEEEeCC---------------------CCeEEEEEEH
Confidence 57899999999998889999999 9999999999999999999999964 3589999999
Q ss_pred HHHHHHhhhc----ccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178 83 VDIISFLCKE----ENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP 154 (412)
Q Consensus 83 ~Dil~~l~~~----~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~ 154 (412)
.|++.++... ............+++++|... ..+++++.+++++.+|++.|. ++++++||+++....
T Consensus 83 ~Dl~~~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~----- 157 (323)
T 3t4n_C 83 TDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEET----- 157 (323)
T ss_dssp HHHHHHHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTT-----
T ss_pred HHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCC-----
Confidence 9999977531 111001111123455555211 134889999999999999999 899999998643110
Q ss_pred CCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccC-CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEE
Q 015178 155 SLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNI-VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALV 233 (412)
Q Consensus 155 ~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i-~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV 233 (412)
....++|+||+.|+++++..+... ......+++++++ |+++ ++++.+++++.+|++.|.++++ +++||+
T Consensus 158 ------~~~~l~Givt~~di~~~l~~~~~~-~~~~~~~v~~~~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~--~~~pVv 227 (323)
T 3t4n_C 158 ------HREIVVSVLTQYRILKFVALNCRE-THFLKIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRV--SSVPII 227 (323)
T ss_dssp ------CCEEEEEEEEHHHHHHHHHHHCGG-GGGCCSBGGGTTCSBCTT-CCCBCTTSBHHHHHHHHHHHTC--SEEEEE
T ss_pred ------CccceEEEecHHHHHHHHHhcCCc-hhhhhCcHHHcCCCCCCC-cEEECCCCcHHHHHHHHHHcCC--CEEEEE
Confidence 011389999999999999865432 2334567887654 4466 9999999999999999999999 999999
Q ss_pred cCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCC
Q 015178 234 DEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPD 313 (412)
Q Consensus 234 d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (412)
|++|+++|+| |.+|++.++..+ .. ...
T Consensus 228 d~~~~~~Gii-------------------t~~dl~~~~~~~------------------~~---~~~------------- 254 (323)
T 3t4n_C 228 DENGYLINVY-------------------EAYDVLGLIKGG------------------IY---NDL------------- 254 (323)
T ss_dssp CTTCBEEEEE-------------------ETTHHHHHHHTT------------------HH---HHT-------------
T ss_pred CCCCeEEEEE-------------------eHHHHHHHHhhc------------------hh---hhc-------------
Confidence 9999999994 566665543210 00 000
Q ss_pred CCCCCccccccccccccccCccccccccC------CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178 314 SSSSDDESSTGSAQSVRSRGYSARVVHRS------EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML 387 (412)
Q Consensus 314 ~~~~~~e~~~~~~~~~~~~~~~a~~~m~~------~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL 387 (412)
..++.++|+. ++++|++++++.+++++|.++++|++||||++|+++||||++||+
T Consensus 255 -------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil 315 (323)
T 3t4n_C 255 -------------------SLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315 (323)
T ss_dssp -------------------TSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHH
T ss_pred -------------------cCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHH
Confidence 0112344554 799999999999999999999999999999889999999999999
Q ss_pred HHHHH
Q 015178 388 RVIRD 392 (412)
Q Consensus 388 ~~l~~ 392 (412)
+++..
T Consensus 316 ~~l~~ 320 (323)
T 3t4n_C 316 KYILL 320 (323)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
No 2
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=100.00 E-value=9.4e-35 Score=285.80 Aligned_cols=296 Identities=17% Similarity=0.154 Sum_probs=216.4
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
.||.+++|+|+|..+.++++++. ++|+.+|+++|.+++++++||++.+ .++++|+|+.
T Consensus 17 ~~l~~~~v~dim~~~~~vv~v~~-~~tv~~a~~~~~~~~~~~~pV~d~~---------------------~~~~vGiv~~ 74 (334)
T 2qrd_G 17 AFIRSRTSYDVLPTSFRLIVFDV-TLFVKTSLSLLTLNNIVSAPLWDSE---------------------ANKFAGLLTM 74 (334)
T ss_dssp HHHHHSBGGGGSCSEEEEEEEET-TSBHHHHHHHHHHHTCSCEEEEETT---------------------TTEEEEEECH
T ss_pred HHHhcCchhhhCCCCCCEEEEcC-CCCHHHHHHHHHHcCCeEEEEEeCC---------------------CCeEEEEEEH
Confidence 46778999999987778999999 9999999999999999999999953 2689999999
Q ss_pred HHHHHHhhhc-c---cCCCcccccCCchhh-------hccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCC
Q 015178 83 VDIISFLCKE-E---NLLNPESALQDPVSV-------LLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKL 150 (412)
Q Consensus 83 ~Dil~~l~~~-~---~l~~~~~~l~~~V~d-------vm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~ 150 (412)
.||+.++... + +..........+++. +|... ..++++.+++++.+|++.|. ++++++||+++....
T Consensus 75 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~-~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~- 152 (334)
T 2qrd_G 75 ADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIP-PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGET- 152 (334)
T ss_dssp HHHHHHHHHHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSC-SSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTT-
T ss_pred HHHHHHHHHHhhccCCccHHHHHhhhchhhHHHHHHhhccCC-CceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCc-
Confidence 9999877531 0 000000111333333 35432 11389999999999999999 899999998642100
Q ss_pred CCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCccccc-CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCce
Q 015178 151 QPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLN-IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTS 229 (412)
Q Consensus 151 ~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~-i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~ 229 (412)
+...++|+||+.||++++..+.... .....++++++ +|+++ ++++.+++++.+|++.|.++++ ++
T Consensus 153 ----------~~~~~~Givt~~dl~~~~~~~~~~~-~~~~~~v~~l~~~m~~~-~~~v~~~~~~~~~~~~m~~~~~--~~ 218 (334)
T 2qrd_G 153 ----------GSEMIVSVLTQYRILKFISMNCKET-AMLRVPLNQMTIGTWSN-LATASMETKVYDVIKMLAEKNI--SA 218 (334)
T ss_dssp ----------TEEEEEEEEEHHHHHHHHHHHCGGG-GGCCCBGGGSSCSBCSS-CCCBCTTSBHHHHHHHHHHHTC--SE
T ss_pred ----------CccceEEEeeHHHHHHHHHhhccch-hhhhCcHHHhCCcccCC-ceEECCCCcHHHHHHHHHHcCC--cE
Confidence 0112899999999999987643221 12345677754 47777 9999999999999999999999 99
Q ss_pred eEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCC
Q 015178 230 VALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSG 309 (412)
Q Consensus 230 vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (412)
+||+|++|+++|+ +|..|++.++..+. .. .+
T Consensus 219 ~~Vvd~~~~~~Gi-------------------it~~dl~~~~~~~~-~~--------~~--------------------- 249 (334)
T 2qrd_G 219 VPIVNSEGTLLNV-------------------YESVDVMHLIQDGD-YS--------NL--------------------- 249 (334)
T ss_dssp EEEECTTCBEEEE-------------------EETHHHHHHHTTSC-GG--------GG---------------------
T ss_pred EEEEcCCCcEEEE-------------------EEHHHHHHHhhccc-cc--------cc---------------------
Confidence 9999998999999 55667665432100 00 00
Q ss_pred CCCCCCCCCccccccccccccccCcccccccc------CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEeh
Q 015178 310 SCPDSSSSDDESSTGSAQSVRSRGYSARVVHR------SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTF 383 (412)
Q Consensus 310 ~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~------~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~ 383 (412)
..++.++|+ .++++|++++++.+++++|.+++++++||||++|+++||||+
T Consensus 250 -----------------------~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~ 306 (334)
T 2qrd_G 250 -----------------------DLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSL 306 (334)
T ss_dssp -----------------------GSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEH
T ss_pred -----------------------cCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeH
Confidence 011234455 489999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCccccc
Q 015178 384 TGMLRVIRDRLRSMAKAENPNFCPVWI 410 (412)
Q Consensus 384 ~DIL~~l~~~~~~~~~~~~~~~~~~~~ 410 (412)
+||++++....... ...|.++..|-
T Consensus 307 ~dil~~~~~~~~~~--~~~~~~~~~~~ 331 (334)
T 2qrd_G 307 ADILNYIIYDKTTT--PGVPEQTDNFE 331 (334)
T ss_dssp HHHHHHHHSCCC-----------CCCC
T ss_pred HHHHHHHHhccccC--CCCCccccchh
Confidence 99999998755432 22255555543
No 3
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=100.00 E-value=1.9e-34 Score=275.15 Aligned_cols=268 Identities=18% Similarity=0.278 Sum_probs=209.9
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
+++++++. +++++++++ ++|+.+|+++|.+++++++||+|++ .++++||+|..||+.
T Consensus 3 ~~v~~~i~-~~~~~~v~~-~~sl~~a~~~m~~~~~~~lpV~d~~---------------------~~~~~Givt~~di~~ 59 (280)
T 3kh5_A 3 VRVMKIAQ-NKKIVTVYP-TTTIRKALMTMNENKYRRLPVVNAG---------------------NNKVVGIITSMDIVD 59 (280)
T ss_dssp CBGGGTSC-CSCCCCBCT-TSBHHHHHHHHHHHCCCEEEEECTT---------------------TCBEEEEEEHHHHHH
T ss_pred hhHHHHhc-CCCcEEECC-CCcHHHHHHHHHhCCCcEeeEEECC---------------------CCeEEEEEEHHHHHH
Confidence 35666654 458999999 9999999999999999999999952 368999999999999
Q ss_pred Hhhhcc--------cCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCc
Q 015178 88 FLCKEE--------NLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKS 158 (412)
Q Consensus 88 ~l~~~~--------~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~ 158 (412)
++.... ...+....++.+++++|... ++++++++++.+|++.|. ++++++||+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------------- 123 (280)
T 3kh5_A 60 FMGGGSKYNLIREKHERNFLAAINEPVREIMEEN---VITLKENADIDEAIETFLTKNVGGAPIVND------------- 123 (280)
T ss_dssp HTTTSGGGHHHHTTSTTCHHHHTTSBGGGTSBCS---CCCEETTCBHHHHHHHHHHTTCSEEEEECT-------------
T ss_pred HhcccchhhhhhhccccchhHHhhhhHHHhcCCC---CEEECCCCCHHHHHHHHHhCCCCEEEEEcC-------------
Confidence 885321 11111233467899999855 889999999999999999 89999999863
Q ss_pred ccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCc
Q 015178 159 TFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGR 238 (412)
Q Consensus 159 ~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~ 238 (412)
+++.+|++|+.|+++++..... ...++++ +|+++ ++++.+++++.+|++.|.++++ +.+||+ ++|+
T Consensus 124 ---~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~~~Vv-~~~~ 189 (280)
T 3kh5_A 124 ---ENQLISLITERDVIRALLDKID-----ENEVIDD--YITRD-VIVATPGERLKDVARTMVRNGF--RRLPVV-SEGR 189 (280)
T ss_dssp ---TCBEEEEEEHHHHHHHHGGGSC-----TTCBSGG--GCBCS-CCCBCTTCBHHHHHHHHHHHTC--SEEEEE-ETTE
T ss_pred ---CCEEEEEEEHHHHHHHHhhcCC-----CCCCHHH--HhCCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEE-ECCE
Confidence 3678999999999998865321 1235554 67788 9999999999999999999999 999999 5789
Q ss_pred EeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCC
Q 015178 239 LVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSD 318 (412)
Q Consensus 239 lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (412)
++|+ +|.+|++.++..+ + .... +... .
T Consensus 190 ~~Gi-------------------vt~~dl~~~~~~~------------~----~~~~----~~~~-------------~- 216 (280)
T 3kh5_A 190 LVGI-------------------ITSTDFIKLLGSD------------W----AFNH----MQTG-------------N- 216 (280)
T ss_dssp EEEE-------------------EEHHHHHHHHTSH------------H----HHHH----HHSC-------------C-
T ss_pred EEEE-------------------EEHHHHHHHHhhh------------h----hhhh----hccc-------------c-
Confidence 9999 5677777654210 0 0000 0000 0
Q ss_pred ccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 319 DESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 319 ~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
.......++.++|++++++|++++++.+++++|.+++++++||||++|+++|+||++||++++
T Consensus 217 ---------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 217 ---------VREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKYF 279 (280)
T ss_dssp ---------THHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGGG
T ss_pred ---------hhhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHhh
Confidence 000011235678999999999999999999999999999999999999999999999999875
No 4
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=100.00 E-value=1.7e-34 Score=283.70 Aligned_cols=282 Identities=20% Similarity=0.262 Sum_probs=216.5
Q ss_pred cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
..||..++|+|+|..++++++++. ++|+.+|+++|.+++++++||++.+ .++++|+|+
T Consensus 29 ~~~l~~~~v~dim~p~~~v~~v~~-~~~v~~a~~~~~~~~~~~~pV~d~~---------------------~~~~vGivt 86 (330)
T 2v8q_E 29 TTFMKSHRCYDLIPTSSKLVVFDT-SLQVKKAFFALVTNGVRAAPLWDSK---------------------KQSFVGMLT 86 (330)
T ss_dssp HHHHHHSBGGGGSCSEEEEEEEET-TSBHHHHHHHHHHHTCSEEEEEETT---------------------TTEEEEEEE
T ss_pred HHHHHcCcHhhhccCCCcEEEEeC-CCcHHHHHHHHHHcCCcEEEEEeCC---------------------CCeEEEEEE
Confidence 457889999999976678999999 9999999999999999999999963 258999999
Q ss_pred hHHHHHHhhhcc-c----CCCcc----cccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCC
Q 015178 82 MVDIISFLCKEE-N----LLNPE----SALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQ 151 (412)
Q Consensus 82 ~~Dil~~l~~~~-~----l~~~~----~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~ 151 (412)
..|++.++.... . ..... ..+..+++++|... ++++.+++++.+|++.|. ++++++||+++
T Consensus 87 ~~Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~---~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------ 157 (330)
T 2v8q_E 87 ITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKP---LVCISPNASLFDAVSSLIRNKIHRLPVIDP------ 157 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCC---CCCBCTTSBHHHHHHHHHHHTCSCEEEECT------
T ss_pred HHHHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCC---ceEeCCCCCHHHHHHHHHHCCCCeEEEEeC------
Confidence 999998775311 0 00000 01112345667644 899999999999999999 89999999863
Q ss_pred CCCCCCcccCCCCeeeeecHHHHHHHHHHccCc--CCCCCCCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCc
Q 015178 152 PKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL--LSPTPNQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQT 228 (412)
Q Consensus 152 ~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~--l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s 228 (412)
++++++|+||+.|+++++..+... ...+...+++++.+|+ ++ ++++.+++++.+|++.|.++++ +
T Consensus 158 ---------~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~ 225 (330)
T 2v8q_E 158 ---------ESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYAN-IAMVRTTTPVYVALGIFVQHRV--S 225 (330)
T ss_dssp ---------TTCCEEEEECHHHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSS-CCCEETTCBHHHHHHHHHHHCC--S
T ss_pred ---------CCCcEEEEEcHHHHHHHHHHHhhccCchhhhcCCHHHhcccCcCC-ceEECCCCCHHHHHHHHHHcCC--C
Confidence 136789999999999998765322 2233456777777777 67 9999999999999999999999 9
Q ss_pred eeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccC
Q 015178 229 SVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISS 308 (412)
Q Consensus 229 ~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 308 (412)
.+||+|++|+++|+|| .+|++.+...+. ...+ ...+..+ +.
T Consensus 226 ~~~Vvd~~~~l~Giit-------------------~~dl~~~~~~~~-~~~~---------~~~v~~~---~~------- 266 (330)
T 2v8q_E 226 ALPVVDEKGRVVDIYS-------------------KFDVINLAAEKT-YNNL---------DVSVTKA---LQ------- 266 (330)
T ss_dssp EEEEECTTSBEEEEEE-------------------GGGTGGGGGSSC-CCCC---------SSBHHHH---GG-------
T ss_pred eEEEECCCCcEEEEEE-------------------HHHHHHHHhccc-cccc---------cCcHHHH---Hh-------
Confidence 9999998899999955 444444321100 0000 0001111 10
Q ss_pred CCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 309 GSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 309 ~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
....|++++++|++++++.+++++|.+++++++||||++|+++||||++||++
T Consensus 267 ---------------------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~ 319 (330)
T 2v8q_E 267 ---------------------------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQ 319 (330)
T ss_dssp ---------------------------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHH
T ss_pred ---------------------------ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHH
Confidence 01134688999999999999999999999999999999899999999999999
Q ss_pred HHHH
Q 015178 389 VIRD 392 (412)
Q Consensus 389 ~l~~ 392 (412)
++.+
T Consensus 320 ~~~~ 323 (330)
T 2v8q_E 320 ALVL 323 (330)
T ss_dssp HHHS
T ss_pred HHHh
Confidence 8875
No 5
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=1.7e-34 Score=279.28 Aligned_cols=266 Identities=13% Similarity=0.176 Sum_probs=214.6
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
...+|+|+|. ++++++++ ++|+.+|++.|.+++++++||+| + +++||+|..||
T Consensus 18 ~~~~V~dim~--~~~~~v~~-~~~v~~a~~~m~~~~~~~~~V~d--~----------------------~l~GivT~~Di 70 (296)
T 3ddj_A 18 QGMNIETLMI--KNPPILSK-EDRLGSAFKKINEGGIGRIIVAN--E----------------------KIEGLLTTRDL 70 (296)
T ss_dssp CCSSGGGTCE--ESCCEECT-TSBHHHHHHHTTGGGCCEEEEES--S----------------------SEEEEEEHHHH
T ss_pred cccCHHHhcc--CCCcEECC-CccHHHHHHHHHHCCCceEEEEC--C----------------------eEEEEEeHHHH
Confidence 4678999996 57999999 99999999999999999999999 2 69999999999
Q ss_pred HHHhhhcccCCC----cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 86 ISFLCKEENLLN----PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 86 l~~l~~~~~l~~----~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
+.++........ .......+++++|... ++++.+++++.+|++.|. ++++++||+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~--------------- 132 (296)
T 3ddj_A 71 LSTVESYCKDSCSQGDLYHISTTPIIDYMTPN---PVTVYNTSDEFTAINIMVTRNFGSLPVVDI--------------- 132 (296)
T ss_dssp HGGGTTCC---CCHHHHHHHHTSBGGGTSEES---CCCEETTSCHHHHHHHHHHHTCSEEEEECT---------------
T ss_pred HHHhcccccccccchhhHHHhcccHHHhccCC---CEEEcCCCCHHHHHHHHHHcCCCEEEEEcC---------------
Confidence 998864221101 1123467899999855 889999999999999999 89999999853
Q ss_pred CCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEe
Q 015178 161 HNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLV 240 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lv 240 (412)
+++++|+||..|+++++... ....++++ +|+++ ++++.+++++.+|++.|.++++ +.+||+|++|+++
T Consensus 133 -~~~lvGivt~~dl~~~~~~~------~~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~m~~~~~--~~~~Vvd~~~~~~ 200 (296)
T 3ddj_A 133 -NDKPVGIVTEREFLLLYKDL------DEIFPVKV--FMSTK-VQTIYKEVRLDQAVKLMLRRGF--RRLPVIDDDNKVV 200 (296)
T ss_dssp -TSCEEEEEEHHHHGGGGGGS------CCCCBHHH--HSBCS-CCCEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEE
T ss_pred -CCcEEEEEeHHHHHHhhhcc------cccccHHH--hhcCC-CeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCEEE
Confidence 36789999999999876431 11345665 57788 9999999999999999999999 9999999999999
Q ss_pred eeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcc
Q 015178 241 GDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDE 320 (412)
Q Consensus 241 G~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 320 (412)
|+ +|..|++.++.. .+..+ ...
T Consensus 201 Gi-------------------vt~~dl~~~~~~------------------~~~~~----~~~----------------- 222 (296)
T 3ddj_A 201 GI-------------------VTVVNAIKQLAK------------------AVDKL----DPD----------------- 222 (296)
T ss_dssp EE-------------------EEHHHHHHHHHH------------------HHHHT----CTH-----------------
T ss_pred EE-------------------EEHHHHHHHHHH------------------HHhhc----Chh-----------------
Confidence 99 667777664310 00000 000
Q ss_pred ccccccccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 321 SSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 321 ~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
.....++.++|++++++|++++++.+++++|.+++++++||||++|+++||||++||++++.+...
T Consensus 223 ---------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 223 ---------YFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp ---------HHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHH
T ss_pred ---------hhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHhc
Confidence 000123467888999999999999999999999999999999988999999999999999987654
No 6
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=100.00 E-value=3.7e-33 Score=267.13 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=187.1
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
|+++++|. ++++++++ ++|+.+|++.|.++++.++||+|+ +++++|+++..||+.
T Consensus 1 m~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~pV~d~----------------------~~~~~Giv~~~dl~~ 55 (282)
T 2yzq_A 1 MRVKTIMT--QNPVTITL-PATRNYALELFKKYKVRSFPVVNK----------------------EGKLVGIISVKRILV 55 (282)
T ss_dssp CBHHHHSE--ESCCCEES-SCC------------CCEEEEECT----------------------TCCEEEEEESSCC--
T ss_pred CchHHhcc--CCCeEECC-CCcHHHHHHHHHHcCCCeEEEEcC----------------------CCcEEEEEEHHHHHh
Confidence 57899996 67899999 999999999999999999999995 368999999999986
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
.+. +.+++++|... ++++++++++.+|++.|. ++++++||+++ +++.+
T Consensus 56 ~~~------------~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----------------~~~~~ 104 (282)
T 2yzq_A 56 NPD------------EEQLAMLVKRD---VPVVKENDTLKKAAKLMLEYDYRRVVVVDS----------------KGKPV 104 (282)
T ss_dssp --------------------CCCBSC---CCEEETTSBHHHHHHHHHHHTCSEEEEECT----------------TSCEE
T ss_pred hhc------------cCCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEE
Confidence 542 35688999754 789999999999999999 89999999863 25789
Q ss_pred eeecHHHHHH-HHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecC
Q 015178 167 CWLTQEDLIR-YFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISP 245 (412)
Q Consensus 167 ~iITq~DIv~-~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~ 245 (412)
|+||+.|+++ ++.+. . .....++++ +|+++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+||.
T Consensus 105 Giit~~di~~~~~~~~-~---~~~~~~v~~--~m~~~-~~~v~~~~~l~~~~~~~~~~~~--~~l~Vvd~~~~~~Giit~ 175 (282)
T 2yzq_A 105 GILTVGDIIRRYFAKS-E---KYKGVEIEP--YYQRY-VSIVWEGTPLKAALKALLLSNS--MALPVVDSEGNLVGIVDE 175 (282)
T ss_dssp EEEEHHHHHHHTTTTC-S---GGGGCBSTT--TSBSC-CCCEETTSBHHHHHHHHHTCSS--SEEEEECTTSCEEEEEEG
T ss_pred EEEEHHHHHHHHHhcc-C---CcccCcHHH--HhCCC-CEEECCCCCHHHHHHHHHHcCC--cEEEEEcCCCeEEEEEEH
Confidence 9999999998 76532 0 011334554 67777 9999999999999999999999 999999988999999777
Q ss_pred CccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccc
Q 015178 246 FSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGS 325 (412)
Q Consensus 246 ~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 325 (412)
.||...... . .+.... .-.+... ..++.......+ +..
T Consensus 176 ~dl~~~~~~--------~-----~~~~~~--~~~~~~~-~~~~~~~~~~~~---~~~----------------------- 213 (282)
T 2yzq_A 176 TDLLRDSEI--------V-----RIMKST--ELAASSE-EEWILESHPTLL---FEK----------------------- 213 (282)
T ss_dssp GGGGGCGGG--------C-----C--------------------------------------------------------
T ss_pred HHHhhhhhh--------h-----hhhccc--hhhhhhh-hhhhcccchHHH---HhH-----------------------
Confidence 666531100 0 111000 0000000 000000000000 000
Q ss_pred cccccccCccccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 326 AQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 326 ~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
........+++++|++++++|+|++++.+|+++|.+++++++||||++|+++||||++||++++.+
T Consensus 214 -~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 214 -FELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp ------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred -hhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence 000011234678999999999999999999999999999999999988899999999999987753
No 7
>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1
Probab=99.90 E-value=1.4e-23 Score=202.69 Aligned_cols=191 Identities=16% Similarity=0.174 Sum_probs=156.4
Q ss_pred cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
...+|+++|... ++++++++++.+|++.|. ++++++||.+ ++++|++|+.||++++..
T Consensus 18 ~~~~V~dim~~~---~~~v~~~~~v~~a~~~m~~~~~~~~~V~d------------------~~l~GivT~~Di~~~~~~ 76 (296)
T 3ddj_A 18 QGMNIETLMIKN---PPILSKEDRLGSAFKKINEGGIGRIIVAN------------------EKIEGLLTTRDLLSTVES 76 (296)
T ss_dssp CCSSGGGTCEES---CCEECTTSBHHHHHHHTTGGGCCEEEEES------------------SSEEEEEEHHHHHGGGTT
T ss_pred cccCHHHhccCC---CcEECCCccHHHHHHHHHHCCCceEEEEC------------------CeEEEEEeHHHHHHHhcc
Confidence 457899999855 899999999999999999 8999999974 358899999999998743
Q ss_pred ccC------cCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchh
Q 015178 181 CIG------LLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDET 254 (412)
Q Consensus 181 ~~~------~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~ 254 (412)
... .+......++++ +|+++ ++++.+++++.+|+++|.++++ +++||+|++|+++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~v~~--im~~~-~~~v~~~~~~~~a~~~m~~~~~--~~lpVvd~~~~lvGi------------ 139 (296)
T 3ddj_A 77 YCKDSCSQGDLYHISTTPIID--YMTPN-PVTVYNTSDEFTAINIMVTRNF--GSLPVVDINDKPVGI------------ 139 (296)
T ss_dssp CC---CCHHHHHHHHTSBGGG--TSEES-CCCEETTSCHHHHHHHHHHHTC--SEEEEECTTSCEEEE------------
T ss_pred cccccccchhhHHHhcccHHH--hccCC-CEEEcCCCCHHHHHHHHHHcCC--CEEEEEcCCCcEEEE------------
Confidence 110 000112455665 68888 9999999999999999999999 999999999999999
Q ss_pred HHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCc
Q 015178 255 VAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGY 334 (412)
Q Consensus 255 ~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 334 (412)
+|..|++.++... . ...
T Consensus 140 -------vt~~dl~~~~~~~-------------------------~-------------------------------~~~ 156 (296)
T 3ddj_A 140 -------VTEREFLLLYKDL-------------------------D-------------------------------EIF 156 (296)
T ss_dssp -------EEHHHHGGGGGGS-------------------------C-------------------------------CCC
T ss_pred -------EeHHHHHHhhhcc-------------------------c-------------------------------ccc
Confidence 6677776532100 0 001
Q ss_pred cccccccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 335 SARVVHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 335 ~a~~~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++++|.++++++.+++++.+++++|.+++++++||+|++|+++|+||..||++++.+.
T Consensus 157 ~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~ 215 (296)
T 3ddj_A 157 PVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA 215 (296)
T ss_dssp BHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred cHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 24567888999999999999999999999999999999889999999999999998743
No 8
>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*
Probab=99.90 E-value=8.9e-23 Score=194.22 Aligned_cols=181 Identities=15% Similarity=0.229 Sum_probs=147.0
Q ss_pred ceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccC-------cCCC
Q 015178 116 VIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIG-------LLSP 187 (412)
Q Consensus 116 ~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~-------~l~~ 187 (412)
+++++++++|+.+|+++|. ++++++||+++ ++++++|++|+.||++++..... ....
T Consensus 13 ~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~---------------~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~ 77 (280)
T 3kh5_A 13 KIVTVYPTTTIRKALMTMNENKYRRLPVVNA---------------GNNKVVGIITSMDIVDFMGGGSKYNLIREKHERN 77 (280)
T ss_dssp CCCCBCTTSBHHHHHHHHHHHCCCEEEEECT---------------TTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTC
T ss_pred CcEEECCCCcHHHHHHHHHhCCCcEeeEEEC---------------CCCeEEEEEEHHHHHHHhcccchhhhhhhccccc
Confidence 3899999999999999999 99999999863 13678999999999998743100 0010
Q ss_pred ---CCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178 188 ---TPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA 264 (412)
Q Consensus 188 ---l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~ 264 (412)
....++++ +|+++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|.
T Consensus 78 ~~~~~~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~ 133 (280)
T 3kh5_A 78 FLAAINEPVRE--IMEEN-VITLKENADIDEAIETFLTKNV--GGAPIVNDENQLISL-------------------ITE 133 (280)
T ss_dssp HHHHTTSBGGG--TSBCS-CCCEETTCBHHHHHHHHHHTTC--SEEEEECTTCBEEEE-------------------EEH
T ss_pred hhHHhhhhHHH--hcCCC-CEEECCCCCHHHHHHHHHhCCC--CEEEEEcCCCEEEEE-------------------EEH
Confidence 11346665 68888 9999999999999999999999 999999999999999 667
Q ss_pred hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178 265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA 344 (412)
Q Consensus 265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v 344 (412)
.|++.++... .. ...+++++|++++
T Consensus 134 ~dl~~~~~~~-------------------------~~------------------------------~~~~v~~~m~~~~ 158 (280)
T 3kh5_A 134 RDVIRALLDK-------------------------ID------------------------------ENEVIDDYITRDV 158 (280)
T ss_dssp HHHHHHHGGG-------------------------SC------------------------------TTCBSGGGCBCSC
T ss_pred HHHHHHHhhc-------------------------CC------------------------------CCCCHHHHhCCCC
Confidence 8876642100 00 0012457888999
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+++++++++.++++.|.+++++++||+ ++|+++|+||..||++++.
T Consensus 159 ~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 159 IVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp CCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred eEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence 999999999999999999999999999 5689999999999999985
No 9
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.86 E-value=1.3e-21 Score=174.68 Aligned_cols=145 Identities=20% Similarity=0.256 Sum_probs=105.6
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
-+|++ +|+++ ++++.+++|+.+|+++|.++++ +++||+|++|+++|+||..||.+.-.. .........
T Consensus 18 ~~V~d--iM~~~-v~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~g~lvGiit~~Dll~~~~~-------~~~~~~~~~ 85 (170)
T 4esy_A 18 VPIRD--ILTSP-VVTVREDDTLDAVAKTMLEHQI--GCAPVVDQNGHLVGIITESDFLRGSIP-------FWIYEASEI 85 (170)
T ss_dssp SBGGG--GCCSC-CCCEETTSBHHHHHHHHHHTTC--SEEEEECTTSCEEEEEEGGGGGGGTCC-------TTHHHHHHH
T ss_pred CCHHH--hcCCC-CcEECCcCcHHHHHHHHHHcCC--eEEEEEcCCccEEEEEEHHHHHHHHhh-------ccccchhhh
Confidence 35665 79998 9999999999999999999999 999999999999999877777552200 000000000
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
.... . ........... ....++.++|+++++||+|+
T Consensus 86 ~~~~-------------~---~~~~~~~~~~~----------------------------~~~~~v~~im~~~~~tv~~~ 121 (170)
T 4esy_A 86 LSRA-------------I---PAPEVEHLFET----------------------------GRKLTASAVMTQPVVTAAPE 121 (170)
T ss_dssp HTTT-------------S---CHHHHHHHHHH----------------------------HTTCBHHHHCBCCSCCBCTT
T ss_pred hhhc-------------c---chhhHHhhhcc----------------------------ccccchhhhcccCcccCCcc
Confidence 0000 0 00000000000 01124678999999999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++.+|+++|.++++|++||||+ |+++||||++||+++++.
T Consensus 122 ~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 122 DSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp SBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHTTTSCC
T ss_pred hhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 99999999999999999999985 899999999999998864
No 10
>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1
Probab=99.86 E-value=2.2e-21 Score=185.28 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=143.1
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
.+.+++++|. ++++++++ ++++.+|++.|.++++..+||+|. .++++|++|..|+
T Consensus 58 ~~~~v~~~m~--~~~~~v~~-~~~l~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Giit~~di 112 (282)
T 2yzq_A 58 DEEQLAMLVK--RDVPVVKE-NDTLKKAAKLMLEYDYRRVVVVDS----------------------KGKPVGILTVGDI 112 (282)
T ss_dssp ------CCCB--SCCCEEET-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHHHH
T ss_pred ccCCHHHHcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHH
Confidence 3567899985 45889999 999999999999999999999995 3589999999999
Q ss_pred HH-HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 86 IS-FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 86 l~-~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
+. ++.+.+ .....+++++|... ++++++++++.++++.|. ++++++||+++ ++
T Consensus 113 ~~~~~~~~~------~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~~ 167 (282)
T 2yzq_A 113 IRRYFAKSE------KYKGVEIEPYYQRY---VSIVWEGTPLKAALKALLLSNSMALPVVDS----------------EG 167 (282)
T ss_dssp HHHTTTTCS------GGGGCBSTTTSBSC---CCCEETTSBHHHHHHHHHTCSSSEEEEECT----------------TS
T ss_pred HHHHHhccC------CcccCcHHHHhCCC---CEEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CC
Confidence 99 766421 12256789999754 889999999999999999 88999999853 35
Q ss_pred CeeeeecHHHHH------HHHHHcc---------------C-----cCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHH
Q 015178 164 SEYCWLTQEDLI------RYFLNCI---------------G-----LLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAI 217 (412)
Q Consensus 164 ~~v~iITq~DIv------~~l~~~~---------------~-----~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~ 217 (412)
+++|+||..|++ +++..+. . ........++++ +|+++ ++++++++++.+|+
T Consensus 168 ~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--im~~~-~~~v~~~~~l~~a~ 244 (282)
T 2yzq_A 168 NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAE--IMTRD-VIVATPHMTVHEVA 244 (282)
T ss_dssp CEEEEEEGGGGGGCGGGCC--------------------------------CCCBGGG--TCBSS-CCCBCTTSBHHHHH
T ss_pred eEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhhcccchHHHHhHhhhhhccCCHHH--hcCCC-CceeCCCCCHHHHH
Confidence 789999999999 6653100 0 001123456665 78888 99999999999999
Q ss_pred HHHHhcCCCCceeEEEcCCCcEeeeec
Q 015178 218 PLIAQSHINQTSVALVDEEGRLVGDIS 244 (412)
Q Consensus 218 ~~m~~~~i~~s~vpVVd~~g~lvG~IS 244 (412)
++|.++++ +.+||+|++|+++|+||
T Consensus 245 ~~m~~~~~--~~lpVvd~~~~lvGiit 269 (282)
T 2yzq_A 245 LKMAKYSI--EQLPVIRGEGDLIGLIR 269 (282)
T ss_dssp HHHHHHTC--SEEEEEETTTEEEEEEE
T ss_pred HHHHHcCc--ceeEEECCCCCEEEEEe
Confidence 99999999 99999998889999943
No 11
>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C
Probab=99.85 E-value=4.3e-21 Score=187.37 Aligned_cols=179 Identities=14% Similarity=0.180 Sum_probs=144.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCC
Q 015178 17 KPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLL 96 (412)
Q Consensus 17 ~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~ 96 (412)
.++++++++ ++++.+|++.|.++++.++||+|..+.. ..++++|++|..||+.++......
T Consensus 121 ~~~~v~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~~~~-----------------~~~~l~Givt~~di~~~l~~~~~~- 181 (323)
T 3t4n_C 121 QLDTASIHP-SRPLFEACLKMLESRSGRIPLIDQDEET-----------------HREIVVSVLTQYRILKFVALNCRE- 181 (323)
T ss_dssp ---CCCBCT-TSBHHHHHHHHHHHTCSEEEEEEECTTT-----------------CCEEEEEEEEHHHHHHHHHHHCGG-
T ss_pred CCCceEeCC-CCcHHHHHHHHHhCCeeEEEEEecCCCC-----------------CccceEEEecHHHHHHHHHhcCCc-
Confidence 367899999 9999999999999999999999964320 012499999999999998753211
Q ss_pred CcccccCCchhhh---ccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHH
Q 015178 97 NPESALQDPVSVL---LPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQE 172 (412)
Q Consensus 97 ~~~~~l~~~V~dv---m~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~ 172 (412)
......+|+++ |... ++++.+++++.+|++.|. ++++++||+++ +++++|+||..
T Consensus 182 --~~~~~~~v~~~~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~----------------~~~~~Giit~~ 240 (323)
T 3t4n_C 182 --THFLKIPIGDLNIITQDN---MKSCQMTTPVIDVIQMLTQGRVSSVPIIDE----------------NGYLINVYEAY 240 (323)
T ss_dssp --GGGCCSBGGGTTCSBCTT---CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEEEEEETT
T ss_pred --hhhhhCcHHHcCCCCCCC---cEEECCCCcHHHHHHHHHHcCCCEEEEECC----------------CCeEEEEEeHH
Confidence 23456789999 7644 899999999999999999 89999999863 36789999999
Q ss_pred HHHHHHHHccCcCCCCCCCCcccccCCCC------CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeee
Q 015178 173 DLIRYFLNCIGLLSPTPNQPINSLNIVDD------AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDI 243 (412)
Q Consensus 173 DIv~~l~~~~~~l~~l~~~~i~~L~i~~~------~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~I 243 (412)
|+++++...... ....++++ +|++ + ++++++++++.+|++.|.++++ ..+||||++|+++|+|
T Consensus 241 dl~~~~~~~~~~---~~~~~v~~--~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~~~l~Gii 309 (323)
T 3t4n_C 241 DVLGLIKGGIYN---DLSLSVGE--ALMRRSDDFEG-VYTCTKNDKLSTIMDNIRKARV--HRFFVVDDVGRLVGVL 309 (323)
T ss_dssp HHHHHHHTTHHH---HTTSBHHH--HGGGSCTTCCC-CEEECTTCBHHHHHHHHHHSCC--CEEEEECTTSBEEEEE
T ss_pred HHHHHHhhchhh---hccCCHHH--HHhhccccCCC-CEEECCCCCHHHHHHHHHHhCC--CEEEEECCCCcEEEEE
Confidence 999988653210 11345555 5665 6 9999999999999999999999 9999999999999993
No 12
>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*
Probab=99.84 E-value=1.3e-20 Score=184.69 Aligned_cols=202 Identities=15% Similarity=0.156 Sum_probs=151.3
Q ss_pred CchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHcc
Q 015178 104 DPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI 182 (412)
Q Consensus 104 ~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~ 182 (412)
.+|+++|... ..++++++++++.+|++.|. ++++++||.+++ .++.+|+||..|+++++....
T Consensus 35 ~~v~dim~p~-~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~---------------~~~~vGivt~~Dll~~l~~~~ 98 (330)
T 2v8q_E 35 HRCYDLIPTS-SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSK---------------KQSFVGMLTITDFINILHRYY 98 (330)
T ss_dssp SBGGGGSCSE-EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETT---------------TTEEEEEEEHHHHHHHHHHHH
T ss_pred CcHhhhccCC-CcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCC---------------CCeEEEEEEHHHHHHHHHHHH
Confidence 5799999422 34899999999999999999 999999998642 246899999999999876532
Q ss_pred ---C-cCCCCCCCCcccc-----cCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcc
Q 015178 183 ---G-LLSPTPNQPINSL-----NIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCD 252 (412)
Q Consensus 183 ---~-~l~~l~~~~i~~L-----~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~ 252 (412)
. ....+...+++.+ ++|+++ ++++.+++++.+|++.|.++++ +.+||+|+ +|+++|+
T Consensus 99 ~~~~~~~~~l~~~~~~~~~~~~~~im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~~Gi---------- 165 (330)
T 2v8q_E 99 KSALVQIYELEEHKIETWREVYLQDSFKP-LVCISPNASLFDAVSSLIRNKI--HRLPVIDPESGNTLYI---------- 165 (330)
T ss_dssp HHHTTTCCCGGGCBHHHHHHHHSSSSCCC-CCCBCTTSBHHHHHHHHHHHTC--SCEEEECTTTCCEEEE----------
T ss_pred hccccchhHHhhccHHHHHHHHhhcccCC-ceEeCCCCCHHHHHHHHHHCCC--CeEEEEeCCCCcEEEE----------
Confidence 1 1111111222221 357888 9999999999999999999999 99999998 8999999
Q ss_pred hhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccccccccc
Q 015178 253 ETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSR 332 (412)
Q Consensus 253 ~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 332 (412)
+|..|++.++.. ......+..+ +
T Consensus 166 ---------vt~~dl~~~~~~-------------~~~~~~~~~~---~-------------------------------- 188 (330)
T 2v8q_E 166 ---------LTHKRILKFLKL-------------FITEFPKPEF---M-------------------------------- 188 (330)
T ss_dssp ---------ECHHHHHHHHHH-------------HSCSSSCCGG---G--------------------------------
T ss_pred ---------EcHHHHHHHHHH-------------HhhccCchhh---h--------------------------------
Confidence 667777764310 0000000000 0
Q ss_pred Cccccc--ccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 333 GYSARV--VHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 333 ~~~a~~--~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
...+.+ +|+ ++++++.+++++.++++.|.+++++++||+|++|+++|+||.+||++++.
T Consensus 189 ~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~ 250 (330)
T 2v8q_E 189 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 250 (330)
T ss_dssp GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGG
T ss_pred cCCHHHhcccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHh
Confidence 001122 244 78999999999999999999999999999998899999999999998765
No 13
>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*
Probab=99.80 E-value=4.2e-19 Score=174.01 Aligned_cols=191 Identities=13% Similarity=0.158 Sum_probs=148.9
Q ss_pred ccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcc
Q 015178 14 CIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEE 93 (412)
Q Consensus 14 ~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~ 93 (412)
|....+++++++ ++|+.+|++.|.++++..+||+|..+.. ..+.++|++|..||+.++....
T Consensus 113 m~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~~~~~-----------------~~~~~~Givt~~dl~~~~~~~~ 174 (334)
T 2qrd_G 113 GAIPPETIYVHP-MHSLMDACLAMSKSRARRIPLIDVDGET-----------------GSEMIVSVLTQYRILKFISMNC 174 (334)
T ss_dssp TCSCSSCCCBCT-TSBHHHHHHHHHHSCCSEEEEEEEETTT-----------------TEEEEEEEEEHHHHHHHHHHHC
T ss_pred ccCCCceeeeCC-CCcHHHHHHHHHHCCceEEEEEeCCCCc-----------------CccceEEEeeHHHHHHHHHhhc
Confidence 433334599999 9999999999999999999999963210 0123999999999999886421
Q ss_pred cCCCcccccCCchhhh---ccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeee
Q 015178 94 NLLNPESALQDPVSVL---LPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWL 169 (412)
Q Consensus 94 ~l~~~~~~l~~~V~dv---m~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iI 169 (412)
. .......+|+++ |... ++++.+++++.+|++.|. ++++++||+++ +++++|+|
T Consensus 175 ~---~~~~~~~~v~~l~~~m~~~---~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~----------------~~~~~Gii 232 (334)
T 2qrd_G 175 K---ETAMLRVPLNQMTIGTWSN---LATASMETKVYDVIKMLAEKNISAVPIVNS----------------EGTLLNVY 232 (334)
T ss_dssp G---GGGGCCCBGGGSSCSBCSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEEEEE
T ss_pred c---chhhhhCcHHHhCCcccCC---ceEECCCCcHHHHHHHHHHcCCcEEEEEcC----------------CCcEEEEE
Confidence 1 012245788885 7644 889999999999999999 89999999863 35789999
Q ss_pred cHHHHHHHHHHccCcCCCCCCCCcccccCCCC------CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeee
Q 015178 170 TQEDLIRYFLNCIGLLSPTPNQPINSLNIVDD------AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDI 243 (412)
Q Consensus 170 Tq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~------~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~I 243 (412)
|..|+++++..... .....++.+ +|++ + ++++++++++.+|++.|.++++ ..+||||++|+++|+
T Consensus 233 t~~dl~~~~~~~~~---~~~~~~v~~--~m~~~~~~~~~-~~~v~~~~~l~~~~~~m~~~~~--~~l~Vvd~~g~l~Gi- 303 (334)
T 2qrd_G 233 ESVDVMHLIQDGDY---SNLDLSVGE--ALLKRPANFDG-VHTCRATDRLDGIFDAIKHSRV--HRLFVVDENLKLEGI- 303 (334)
T ss_dssp ETHHHHHHHTTSCG---GGGGSBHHH--HHTTCCTTCCC-CCEECTTCBHHHHHHHHHHSCC--CEEEEECTTCBEEEE-
T ss_pred EHHHHHHHhhcccc---ccccCcHHH--HHhcccccCCC-CEEECCCCcHHHHHHHHHHcCC--CEEEEECCCCeEEEE-
Confidence 99999998754210 111344554 5664 6 9999999999999999999999 999999999999999
Q ss_pred cCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178 244 SPFSFNSCDETVAAAMVTLSAGDLMAYM 271 (412)
Q Consensus 244 S~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 271 (412)
+|.+|++.++
T Consensus 304 ------------------it~~dil~~~ 313 (334)
T 2qrd_G 304 ------------------LSLADILNYI 313 (334)
T ss_dssp ------------------EEHHHHHHHH
T ss_pred ------------------EeHHHHHHHH
Confidence 6678887754
No 14
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=99.77 E-value=1.2e-19 Score=161.88 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=110.4
Q ss_pred cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
+..|++.+|+|+|. ++++++++ ++|+.+|++.|.+++++++||+|+ +|+++|+||
T Consensus 12 ~~~l~~~~V~diM~--~~v~~v~~-~~tl~~a~~~m~~~~~~~~pVvd~----------------------~g~lvGiit 66 (170)
T 4esy_A 12 ARAIRQVPIRDILT--SPVVTVRE-DDTLDAVAKTMLEHQIGCAPVVDQ----------------------NGHLVGIIT 66 (170)
T ss_dssp HHHHHTSBGGGGCC--SCCCCEET-TSBHHHHHHHHHHTTCSEEEEECT----------------------TSCEEEEEE
T ss_pred HHHHcCCCHHHhcC--CCCcEECC-cCcHHHHHHHHHHcCCeEEEEEcC----------------------CccEEEEEE
Confidence 44678899999994 68999999 999999999999999999999996 368999999
Q ss_pred hHHHHHHhhhcc----------cCCC------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecC
Q 015178 82 MVDIISFLCKEE----------NLLN------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPL 144 (412)
Q Consensus 82 ~~Dil~~l~~~~----------~l~~------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~ 144 (412)
..||++.+.... .... .......+++++|+.. +++++++++|.+|+++|. +|+|++||++
T Consensus 67 ~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~tv~~~~~l~~a~~~m~~~~~~~lpVvd 143 (170)
T 4esy_A 67 ESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQP---VVTAAPEDSVGSIADQMRRHGIHRIPVVQ 143 (170)
T ss_dssp GGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCC---SCCBCTTSBHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhcccC---cccCCcchhHHHHHHHHHHcCCcEEEEEE
Confidence 999988654210 0000 0112357899999865 899999999999999999 9999999985
Q ss_pred CCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 145 PAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+ ++++||||++||+++|..
T Consensus 144 ~-----------------g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 144 D-----------------GVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp T-----------------TEEEEEEEHHHHTTTSCC
T ss_pred C-----------------CEEEEEEEHHHHHHHHHh
Confidence 2 578999999999998743
No 15
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.77 E-value=9.4e-19 Score=154.83 Aligned_cols=127 Identities=20% Similarity=0.301 Sum_probs=100.0
Q ss_pred CcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178 192 PINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA 269 (412)
Q Consensus 192 ~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~ 269 (412)
++++ +|+ .+ ++++.+++|+.+|+++|.++++ +++||+|++|+++|+ +|.+|++.
T Consensus 16 ~~~~--iM~P~~~-v~~v~~~~t~~~a~~~m~~~~~--s~~pVvd~~~~lvGi-------------------it~~Di~~ 71 (156)
T 3k6e_A 16 QEET--FLTPAKN-LAVLIDTHNADHATLLLSQMTY--TRVPVVTDEKQFVGT-------------------IGLRDIMA 71 (156)
T ss_dssp TGGG--GEEETTS-SCCEETTSBHHHHHHHHTTSSS--SEEEEECC-CBEEEE-------------------EEHHHHHH
T ss_pred cHHH--hCcchhH-eEEECCcCCHHHHHHHHHHcCC--cEEEEEcCCCcEEEE-------------------EEecchhh
Confidence 3444 455 45 9999999999999999999999 999999999999999 66778776
Q ss_pred hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178 270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP 349 (412)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~ 349 (412)
+.... .... ..+ ...++.++|++++++|++
T Consensus 72 ~~~~~-----------------~~~~--~~~-------------------------------~~~~v~~im~~~~~~v~~ 101 (156)
T 3k6e_A 72 YQMEH-----------------DLSQ--EIM-------------------------------ADTDIVHMTKTDVAVVSP 101 (156)
T ss_dssp HHHHH-----------------TCCH--HHH-------------------------------TTSBGGGTCBCSCCCBCT
T ss_pred hhhhc-----------------cccc--ccc-------------------------------cccCHHHhhcCCceeccc
Confidence 43100 0000 000 012356789999999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~ 394 (412)
++++.+++++|.++++ +||||++|+++||||++||++++...+
T Consensus 102 ~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 102 DFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp TCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence 9999999999998764 999999999999999999999997654
No 16
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.76 E-value=2.3e-18 Score=149.53 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=103.6
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|++ + ++++.+++++.+|++.|.++++ +++||+|++ |+++|+ +|.+|
T Consensus 22 ~~~v~d--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d 77 (148)
T 3lv9_A 22 EKKIRE--IMVPRTD-MVCIYESDSEEKILAILKEEGV--TRYPVCRKNKDDILGF-------------------VHIRD 77 (148)
T ss_dssp TCBGGG--TSEETTT-CCCEETTCCHHHHHHHHHHSCC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred CCCHHH--ccccHHH-eEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEE-------------------EEHHH
Confidence 456665 6887 7 9999999999999999999999 999999988 899999 66788
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++.... .. . ..++.++| +++++
T Consensus 78 l~~~~~----------------------------~~-------------~----------------~~~v~~~m-~~~~~ 99 (148)
T 3lv9_A 78 LYNQKI----------------------------NE-------------N----------------KIELEEIL-RDIIY 99 (148)
T ss_dssp HHHHHH----------------------------HH-------------S----------------CCCGGGTC-BCCEE
T ss_pred HHHHHh----------------------------cC-------------C----------------CccHHHhc-CCCeE
Confidence 766320 00 0 01245678 88999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++++++.+++++|.+++++++||||++|+++||||+.||++++...
T Consensus 100 v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 100 ISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp EETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHT
T ss_pred ECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999998864
No 17
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.76 E-value=2e-18 Score=154.36 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=103.5
Q ss_pred CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|+ .+ ++++++++++.+|++.|.++++ +++||+|++ |+++|+ +|.+|
T Consensus 41 ~~~v~d--iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d 96 (172)
T 3lhh_A 41 ERTISS--LMVPRSD-IVFLDLNLPLDANLRTVMQSPH--SRFPVCRNNVDDMVGI-------------------ISAKQ 96 (172)
T ss_dssp --CTTT--TSEEGGG-CCCEETTSCHHHHHHHHHTCCC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred CCCHHH--hCccHHH-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCeEEEE-------------------EEHHH
Confidence 445665 687 66 9999999999999999999999 999999988 899999 66788
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++..... .. ..++.++| +++++
T Consensus 97 l~~~~~~----------------------------~~-----------------------------~~~v~~im-~~~~~ 118 (172)
T 3lhh_A 97 LLSESIA----------------------------GE-----------------------------RLELVDLV-KNCNF 118 (172)
T ss_dssp HHHHHHT----------------------------TC-----------------------------CCCGGGGC-BCCEE
T ss_pred HHHHHhh----------------------------cC-----------------------------cccHHHHh-cCCeE
Confidence 7763210 00 01245788 89999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
+.+++++.+++.+|.+++++++||||++|+++||||++||++++...+.
T Consensus 119 v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~ 167 (172)
T 3lhh_A 119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFF 167 (172)
T ss_dssp EETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999986543
No 18
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.76 E-value=1.6e-18 Score=148.92 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=95.1
Q ss_pred CCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
+|+ ++ ++++.+++++.+|+++|.++++ +++||+|++ |+++|+ +|.+|++.++..+
T Consensus 8 iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVvd~~~~~~vGi-------------------vt~~dl~~~~~~~ 65 (136)
T 3lfr_A 8 IMVPRSQ-MISIKATQTPREFLPAVIDAAH--SRYPVIGESHDDVLGV-------------------LLAKDLLPLILKA 65 (136)
T ss_dssp HSEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEE-------------------EEGGGGGGGGGSS
T ss_pred ccccHHH-EEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEE-------------------EEHHHHHHHHHhc
Confidence 577 45 8999999999999999999999 999999987 799999 4556665432100
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM 354 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~ 354 (412)
. .. ..++.++|+. ++++.+++++.
T Consensus 66 ~-------------------------~~------------------------------~~~v~~~m~~-~~~v~~~~~l~ 89 (136)
T 3lfr_A 66 D-------------------------GD------------------------------SDDVKKLLRP-ATFVPESKRLN 89 (136)
T ss_dssp S-------------------------GG------------------------------GCCGGGTCBC-CCEEETTCBHH
T ss_pred c-------------------------CC------------------------------CcCHHHHcCC-CeEECCCCcHH
Confidence 0 00 0123467754 89999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
+++++|.+++++++||+|++|+++||||++||++++..++..
T Consensus 90 ~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 90 VLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp HHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC------
T ss_pred HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcC
Confidence 999999999999999999999999999999999998875543
No 19
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.76 E-value=3.7e-18 Score=145.12 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=99.4
Q ss_pred CCCcccccCCCCC-cEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDDA-GIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~~-~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
..++++ +|++. .++++.+++++.+|++.|.++++ +++||+|++ |+++|+ +|.+|+
T Consensus 5 ~~~v~~--iM~~~~~v~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Gi-------------------vt~~dl 61 (130)
T 3i8n_A 5 DVPVTQ--VMTPRPVVFRVDATMTINEFLDKHKDTPF--SRPLVYSEQKDNIIGF-------------------VHRLEL 61 (130)
T ss_dssp --CCTT--TSCCBCCCCEEETTSBHHHHHHHTTTCSC--SCCEEESSSTTCEEEE-------------------CCHHHH
T ss_pred cCCHhh--CCCcHHHEEEEcCCCCHHHHHHHHHhCCC--CEEEEEeCCCCcEEEE-------------------EEHHHH
Confidence 345665 67732 27899999999999999999999 999999987 899999 778888
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+.....+ . . ..++.++| ++++++
T Consensus 62 ~~~~~~~----------------------------~------------~----------------~~~v~~~m-~~~~~v 84 (130)
T 3i8n_A 62 FKMQQSG----------------------------S------------G----------------QKQLGAVM-RPIQVV 84 (130)
T ss_dssp HHHHHTT----------------------------T------------T----------------TSBHHHHS-EECCEE
T ss_pred HHHHhcC----------------------------C------------C----------------cCCHHHHh-cCCcCc
Confidence 7642100 0 0 01234667 468999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
++++++.+++++|.+++++++||||++|+++||||+.||++++.
T Consensus 85 ~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 85 LNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp ETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence 99999999999999999999999999999999999999999986
No 20
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.76 E-value=4e-18 Score=144.89 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=97.4
Q ss_pred CCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 191 QPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 191 ~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
.++++ +|+ ++ ++++++++++.+|++.|.++++ +++||+|++ |+++|+ +|.+|+
T Consensus 5 ~~v~d--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~~Gi-------------------vt~~dl 60 (129)
T 3jtf_A 5 RTVAD--IMVPRSR-MDLLDISQPLPQLLATIIETAH--SRFPVYEDDRDNIIGI-------------------LLAKDL 60 (129)
T ss_dssp CBHHH--HCEEGGG-CCCEETTSCHHHHHHHHHHSCC--SEEEEESSSTTCEEEE-------------------EEGGGG
T ss_pred CCHHH--hCccHHH-eEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCcEEEE-------------------EEHHHH
Confidence 34554 577 56 8999999999999999999999 999999986 899999 455666
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+.+.... ..+++++|+ +++++
T Consensus 61 ~~~~~~~----------------------------------------------------------~~~v~~~m~-~~~~v 81 (129)
T 3jtf_A 61 LRYMLEP----------------------------------------------------------ALDIRSLVR-PAVFI 81 (129)
T ss_dssp GGGGTCT----------------------------------------------------------TSCGGGGCB-CCCEE
T ss_pred HhHhccC----------------------------------------------------------CcCHHHHhC-CCeEe
Confidence 5432100 001345664 58999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
.+++++.+++++|.+++++++||+|++|+++||||++||++++..+
T Consensus 82 ~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 82 PEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp ETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence 9999999999999999999999999989999999999999998864
No 21
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.75 E-value=9.7e-18 Score=147.60 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=107.4
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
.++++ +|++. + ++.+++++.+|++.|.++++ +.+||+|++|+++|+ +|..|++..
T Consensus 17 ~~v~~--im~~~-~-~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~ 71 (159)
T 3fv6_A 17 LQVKD--FQSIP-V-VIHENVSVYDAICTMFLEDV--GTLFVVDRDAVLVGV-------------------LSRKDLLRA 71 (159)
T ss_dssp CBGGG--SCBCC-C-EEETTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred CCHHH--HcCCC-E-EECCCCcHHHHHHHHHHCCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence 35555 57654 5 99999999999999999999 999999999999999 667777663
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCH 348 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~ 348 (412)
+..+ . . ....++.++|.+ ++++++
T Consensus 72 ~~~~----------------------------~-------------~-------------~~~~~v~~~m~~~~~~~~v~ 97 (159)
T 3fv6_A 72 SIGQ----------------------------Q-------------E-------------LTSVPVHIIMTRMPNITVCR 97 (159)
T ss_dssp HTSC----------------------------S-------------C-------------TTTCBGGGTSEETTSCCCBC
T ss_pred hhcc----------------------------C-------------c-------------ccCcCHHHHHcCCCCcEEEC
Confidence 2100 0 0 001124677887 899999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEeCCC---cEEEEEehHHHHHHHHHHHhhccccCCCC
Q 015178 349 PWSSLMAVIMQALARRVSYVWVVEEDC---TLVGIVTFTGMLRVIRDRLRSMAKAENPN 404 (412)
Q Consensus 349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~---~lvGIVT~~DIL~~l~~~~~~~~~~~~~~ 404 (412)
+++++.+++++|.+++++++||||++| +++||||++||++++.+.....+..++|.
T Consensus 98 ~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~~~~~~~~~~~~~ 156 (159)
T 3fv6_A 98 REDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVSLSENEILLQHHH 156 (159)
T ss_dssp TTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHHHHTTCCC-----
T ss_pred CCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHHHhhcchhhhhcc
Confidence 999999999999999999999999988 99999999999999999888777777664
No 22
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.75 E-value=5e-18 Score=141.85 Aligned_cols=115 Identities=21% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|+++ ++++.+++++.+|++.|.++++ +.+||+|++|+++|+ ++..|++..+..
T Consensus 6 im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~-------------------vt~~dl~~~~~~---- 59 (122)
T 3kpb_A 6 ILSKP-PITAHSNISIMEAAKILIKHNI--NHLPIVDEHGKLVGI-------------------ITSWDIAKALAQ---- 59 (122)
T ss_dssp HCCSC-CCCEETTSBHHHHHHHHHHHTC--SCEEEECTTSBEEEE-------------------ECHHHHHHHHHT----
T ss_pred hhCCC-CEEeCCCCcHHHHHHHHHHcCC--CeEEEECCCCCEEEE-------------------EEHHHHHHHHHh----
Confidence 67888 9999999999999999999999 999999999999999 677887763210
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
. ..++.++|.++++++.+++++.+++
T Consensus 60 -------------------------~-----------------------------~~~v~~~~~~~~~~v~~~~~l~~~~ 85 (122)
T 3kpb_A 60 -------------------------N-----------------------------KKTIEEIMTRNVITAHEDEPVDHVA 85 (122)
T ss_dssp -------------------------T-----------------------------CCBGGGTSBSSCCCEETTSBHHHHH
T ss_pred -------------------------c-----------------------------ccCHHHHhcCCCeEECCCCCHHHHH
Confidence 0 0024567888999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++|.+++++++||+|++|+++|+||+.||++++.+
T Consensus 86 ~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 86 IKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp HHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred HHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence 99999999999999999999999999999998764
No 23
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.75 E-value=7.5e-18 Score=143.99 Aligned_cols=130 Identities=18% Similarity=0.349 Sum_probs=105.7
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA 269 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~ 269 (412)
..++++ +|+++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..|++.
T Consensus 6 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~ 61 (138)
T 2yzi_A 6 KAPIKV--YMTKK-LLGVKPSTSVQEASRLMMEFDV--GSLVVINDDGNVVGF-------------------FTKSDIIR 61 (138)
T ss_dssp TSBGGG--TCBCC-CCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE-------------------EEHHHHHH
T ss_pred hhhHHH--HhcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHH
Confidence 345555 68888 9999999999999999999999 999999988999999 66777753
Q ss_pred -hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178 270 -YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH 348 (412)
Q Consensus 270 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~ 348 (412)
++..+ . ....++.++|.+++++++
T Consensus 62 ~~~~~~------------------------------------~-------------------~~~~~v~~~m~~~~~~v~ 86 (138)
T 2yzi_A 62 RVIVPG------------------------------------L-------------------PYDIPVERIMTRNLITAN 86 (138)
T ss_dssp HTTTTC------------------------------------C-------------------CTTSBGGGTCBCSCCEEE
T ss_pred HHHhcC------------------------------------C-------------------cccCCHHHHhhCCCeEEC
Confidence 21100 0 001224578889999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccc
Q 015178 349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAK 399 (412)
Q Consensus 349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~ 399 (412)
+++++.+++++|.+++++++ |||++|+++|+||+.||++++.+.....+.
T Consensus 87 ~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~~~~~~ 136 (138)
T 2yzi_A 87 VNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRLETAIS 136 (138)
T ss_dssp TTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCSCCC--
T ss_pred CCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999 999889999999999999999876655543
No 24
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.75 E-value=1.2e-17 Score=141.75 Aligned_cols=127 Identities=18% Similarity=0.246 Sum_probs=103.8
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
.++++ +|.++ ++++.+++++.+|++.|.++++ +++||+| +|+++|+ +|..|++.+
T Consensus 4 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~~ 58 (133)
T 2ef7_A 4 EIVKE--YMKTQ-VISVTKDAKLNDIAKVMTEKNI--GSVIVVD-GNKPVGI-------------------ITERDIVKA 58 (133)
T ss_dssp CBGGG--TSBCS-CCEEETTCBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHH
T ss_pred ccHHH--hccCC-CEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EcHHHHHHH
Confidence 34554 68888 9999999999999999999999 9999999 8999999 667777653
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
...+ . . ...++.++|.+++++|+++
T Consensus 59 ~~~~------------------------------------~----~---------------~~~~v~~~~~~~~~~v~~~ 83 (133)
T 2ef7_A 59 IGKG------------------------------------K----S---------------LETKAEEFMTASLITIRED 83 (133)
T ss_dssp HHTT------------------------------------C----C---------------TTCBGGGTSEECCCCEETT
T ss_pred HhcC------------------------------------C----C---------------cccCHHHHcCCCCEEECCC
Confidence 2100 0 0 0112456788899999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
+++.+++++|.+++++++||||++|+++|+||+.||++++.+....+
T Consensus 84 ~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~~~l 130 (133)
T 2ef7_A 84 SPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMFETM 130 (133)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHHHHh
Confidence 99999999999999999999998899999999999999998876543
No 25
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.75 E-value=3.9e-18 Score=144.40 Aligned_cols=116 Identities=18% Similarity=0.312 Sum_probs=93.8
Q ss_pred CCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
+|+ .+ ++++.+++++.+|++.|.++++ +++||+|++ |+++|+| |.+|++..+...
T Consensus 8 iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~vGiv-------------------t~~dl~~~~~~~ 65 (127)
T 3nqr_A 8 IMIPRSQ-MITLKRNQTLDECLDVIIESAH--SRFPVISEDKDHIEGIL-------------------MAKDLLPFMRSD 65 (127)
T ss_dssp HSEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEEE-------------------EGGGGGGGGSTT
T ss_pred hcccHHH-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEcCCCCcEEEEE-------------------EHHHHHHHHhcc
Confidence 576 45 8999999999999999999999 999999988 8999994 556655432100
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM 354 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~ 354 (412)
. ...+++++|+ +++++++++++.
T Consensus 66 -----------------------------------------~---------------~~~~v~~~m~-~~~~v~~~~~l~ 88 (127)
T 3nqr_A 66 -----------------------------------------A---------------EAFSMDKVLR-TAVVVPESKRVD 88 (127)
T ss_dssp -----------------------------------------C---------------CCCCHHHHCB-CCCEEETTCBHH
T ss_pred -----------------------------------------C---------------CCCCHHHHcC-CCeEECCCCcHH
Confidence 0 0012345674 478999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++|.+++++++||||++|+++||||++||++++..
T Consensus 89 ~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 89 RMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC--
T ss_pred HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence 99999999999999999999999999999999998753
No 26
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.74 E-value=8.6e-18 Score=144.08 Aligned_cols=128 Identities=26% Similarity=0.390 Sum_probs=100.6
Q ss_pred CCCccccc-CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178 190 NQPINSLN-IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM 268 (412)
Q Consensus 190 ~~~i~~L~-i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~ 268 (412)
.++++++. +|.++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..|++
T Consensus 7 ~~~v~~~~~~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~ 64 (144)
T 2nyc_A 7 KIPIGDLNIITQDN-MKSCQMTTPVIDVIQMLTQGRV--SSVPIIDENGYLINV-------------------YEAYDVL 64 (144)
T ss_dssp GSBGGGSSCCBCSS-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHH
T ss_pred hcchhhcCCCCCCC-ceEECCCCcHHHHHHHHHHcCc--ceeeEEcCCCcEEEE-------------------EcHHHHH
Confidence 56777765 45667 9999999999999999999999 999999988999999 5677776
Q ss_pred hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC------
Q 015178 269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS------ 342 (412)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~------ 342 (412)
.+...+. +.. ...++.++|.+
T Consensus 65 ~~~~~~~------------------------~~~-----------------------------~~~~v~~~m~~~~~~~~ 91 (144)
T 2nyc_A 65 GLIKGGI------------------------YND-----------------------------LSLSVGEALMRRSDDFE 91 (144)
T ss_dssp HHHHTC---------------------------------------------------------CCSBHHHHHHHCC----
T ss_pred HHhcccc------------------------ccc-----------------------------CCccHHHHHhcCccccC
Confidence 5431100 000 00112344543
Q ss_pred CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++.+++++.+++++|.+++++++||||++|+++|+||+.||++++.+
T Consensus 92 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 92 GVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp --CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred CCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence 68999999999999999999999999999988999999999999999875
No 27
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.74 E-value=8e-18 Score=142.50 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=102.8
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
-++++ +|+++ +.++.+++++.+|++.|.++++ +.+||+|+ |+++|+ +|.+|+++.
T Consensus 5 ~~v~~--~m~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~-~~~~Gi-------------------vt~~dl~~~ 59 (128)
T 3gby_A 5 VTFSY--LAETD-YPVFTLGGSTADAARRLAASGC--ACAPVLDG-ERYLGM-------------------VHLSRLLEG 59 (128)
T ss_dssp CBGGG--GCBCC-SCCEETTSBHHHHHHHHHHHTC--SEEEEEET-TEEEEE-------------------EEHHHHHTT
T ss_pred eEHHH--hhcCC-cceECCCCCHHHHHHHHHHCCC--cEEEEEEC-CEEEEE-------------------EEHHHHHHH
Confidence 34554 68888 9999999999999999999999 99999999 999999 667777653
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
...+ . . ...+++++|.+++++++++
T Consensus 60 ~~~~------------------------------------~----~---------------~~~~v~~~m~~~~~~v~~~ 84 (128)
T 3gby_A 60 RKGW------------------------------------P----T---------------VKEKLGEELLETVRSYRPG 84 (128)
T ss_dssp CSSS------------------------------------C----C---------------TTCBCCGGGCBCCCCBCTT
T ss_pred HhhC------------------------------------C----c---------------ccCcHHHHccCCCcEECCC
Confidence 2100 0 0 0012456788999999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++.+++++|.+++++++||||++|+++|+||+.||++++.+.
T Consensus 85 ~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~~ 127 (128)
T 3gby_A 85 EQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAER 127 (128)
T ss_dssp SBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998753
No 28
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.73 E-value=2.3e-17 Score=141.88 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=102.1
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC--cEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG--RLVGDISPFSFNSCDETVAAAMVTLSAGDLM 268 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g--~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~ 268 (412)
.++++ +|+++ ++++.+++++.+|++.|.++++ +.+||+|++| +++|+ +|..|++
T Consensus 5 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~~~Gi-------------------vt~~dl~ 60 (141)
T 2rih_A 5 IRTSE--LLKRP-PVSLPETATIREVATELAKNRV--GLAVLTARDNPKRPVAV-------------------VSERDIL 60 (141)
T ss_dssp CBGGG--GCCSC-CEEEETTCBHHHHHHHHHHHTC--SEEEEEETTEEEEEEEE-------------------EEHHHHH
T ss_pred eEHHH--HhcCC-CeEeCCCCcHHHHHHHHHHcCC--CEEEEEcCCCcceeEEE-------------------EEHHHHH
Confidence 35555 68888 9999999999999999999999 9999999988 99999 6677776
Q ss_pred hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178 269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH 348 (412)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~ 348 (412)
.++..+ . . ...++.++|.+++++|.
T Consensus 61 ~~~~~~------------------------------------~----~---------------~~~~v~~~m~~~~~~v~ 85 (141)
T 2rih_A 61 RAVAQR------------------------------------L----D---------------LDGPAMPIANSPITVLD 85 (141)
T ss_dssp HHHHTT------------------------------------C----C---------------TTSBSGGGCBCCCEEET
T ss_pred HHHhcC------------------------------------C----C---------------CCCCHHHHcCCCCeEEc
Confidence 632100 0 0 01124578889999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++ ++.+++++|.+++++++||||++|+++|+||+.||++++..
T Consensus 86 ~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 86 TD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp TS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred CC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence 99 99999999999999999999988999999999999988765
No 29
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.73 E-value=6.4e-18 Score=145.97 Aligned_cols=139 Identities=20% Similarity=0.269 Sum_probs=102.0
Q ss_pred CcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178 192 PINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA 269 (412)
Q Consensus 192 ~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~ 269 (412)
++++ +|++ + ++++.+++++.+|++.|.++++ +++||+|++|+++|+|| .+|++.
T Consensus 6 ~v~~--im~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~G~vt-------------------~~dl~~ 61 (152)
T 4gqw_A 6 TVGE--FMTKKED-LHVVKPTTTVDEALELLVENRI--TGFPVIDEDWKLVGLVS-------------------DYDLLA 61 (152)
T ss_dssp BGGG--TSEESTT-CCCBCTTSBHHHHHHHHHHTTC--SEEEEECTTCBEEEEEE-------------------HHHHTT
T ss_pred Ehhh--ccCCCCC-CeEECCCCcHHHHHHHHHHcCC--ceEEEEeCCCeEEEEEE-------------------HHHHHH
Confidence 4554 6776 6 9999999999999999999999 99999999999999955 555544
Q ss_pred hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178 270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP 349 (412)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~ 349 (412)
+......... +..+...+. .....++.++|.++++++.+
T Consensus 62 ~~~~~~~~~~-------------~~~~~~~~~----------------------------~~~~~~v~~~m~~~~~~v~~ 100 (152)
T 4gqw_A 62 LDSGDSTWKT-------------FNAVQKLLS----------------------------KTNGKLVGDLMTPAPLVVEE 100 (152)
T ss_dssp CC----CCHH-------------HHHHHTC---------------------------------CCBHHHHSEESCCCEES
T ss_pred hhcccCcccc-------------hHHHHHHHH----------------------------HhccccHHHhcCCCceEECC
Confidence 3211000000 000000000 00112356789889999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
++++.+++++|.+++++++||||++|+++||||.+||++++.+...
T Consensus 101 ~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~~ 146 (152)
T 4gqw_A 101 KTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIKR 146 (152)
T ss_dssp SSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC---
T ss_pred CCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhccc
Confidence 9999999999999999999999988999999999999999987544
No 30
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=9.2e-18 Score=143.13 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=97.0
Q ss_pred CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC-CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCC
Q 015178 198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE-EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCG 274 (412)
Q Consensus 198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~-~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~ 274 (412)
+|++ + ++++.+++++.+|+++|.++++ +++||+|+ +|+++|+ +|.+|++.....+
T Consensus 7 iM~~~~~-~~~v~~~~~v~~a~~~m~~~~~--~~~pVv~~~~~~lvGi-------------------vt~~dl~~~~~~~ 64 (130)
T 3hf7_A 7 IMVPRNE-IVGIDINDDWKSIVRQLTHSPH--GRIVLYRDSLDDAISM-------------------LRVREAYRLMTEK 64 (130)
T ss_dssp HSEEGGG-CCEEETTSCHHHHHHHHHTCSS--SEEEEESSSGGGEEEE-------------------EEHHHHHHHHTSS
T ss_pred hCccHHH-EEEEcCCCCHHHHHHHHHHCCC--CeEEEEcCCCCcEEEE-------------------EEHHHHHHHHhcc
Confidence 5753 5 9999999999999999999999 99999976 5899999 6678877643211
Q ss_pred CCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHH
Q 015178 275 RPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLM 354 (412)
Q Consensus 275 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~ 354 (412)
.... ..++.++| ++++++.+++++.
T Consensus 65 ~~~~------------------------------------------------------~~~v~~~m-~~~~~v~~~~~l~ 89 (130)
T 3hf7_A 65 KEFT------------------------------------------------------KEIMLRAA-DEIYFVPEGTPLS 89 (130)
T ss_dssp SCCC------------------------------------------------------HHHHHHHS-BCCCEEETTCBHH
T ss_pred Cccc------------------------------------------------------hhhHHHhc-cCCeEeCCCCcHH
Confidence 0000 01134566 6789999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++++|.+++++++||+|++|+++||||+.||++++..+
T Consensus 90 ~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 90 TQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp HHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC-
T ss_pred HHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCC
Confidence 999999999999999999999999999999999998754
No 31
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.73 E-value=1.9e-17 Score=141.32 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=102.9
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh-h
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL-M 268 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl-~ 268 (412)
..++++ +|+++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++..|+ +
T Consensus 7 ~~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~ 62 (138)
T 2p9m_A 7 NIKVKD--VMTKN-VITAKRHEGVVEAFEKMLKYKI--SSLPVIDDENKVIGI-------------------VTTTDIGY 62 (138)
T ss_dssp TCBGGG--TSBCS-CCCEETTSBHHHHHHHHHHHTC--CEEEEECTTCBEEEE-------------------EEHHHHHH
T ss_pred cCCHHH--hhcCC-ceEECCCCcHHHHHHHHHHCCC--cEEEEECCCCeEEEE-------------------EEHHHHHH
Confidence 445665 68888 9999999999999999999999 999999988999999 667777 6
Q ss_pred hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178 269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH 348 (412)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~ 348 (412)
.++..+ . ....++.++|.+++++++
T Consensus 63 ~~~~~~------------------------------------------~-------------~~~~~v~~~m~~~~~~v~ 87 (138)
T 2p9m_A 63 NLIRDK------------------------------------------Y-------------TLETTIGDVMTKDVITIH 87 (138)
T ss_dssp HHTTTC------------------------------------------C-------------CSSCBHHHHSCSSCCCEE
T ss_pred HHHhhc------------------------------------------c-------------cCCcCHHHHhCCCcEEEC
Confidence 532100 0 001124567888999999
Q ss_pred CCCcHHHHHHHHHHcC-----CcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 349 PWSSLMAVIMQALARR-----VSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 349 ~~~sl~~v~~~m~~~~-----ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++++.+++++|.+++ ++++||+|++|+++|+||..||++++.++
T Consensus 88 ~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~ 137 (138)
T 2p9m_A 88 EDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKI 137 (138)
T ss_dssp TTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhh
Confidence 9999999999999999 99999999889999999999999988763
No 32
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.72 E-value=7.4e-18 Score=147.41 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEE-cCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 191 QPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALV-DEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 191 ~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVV-d~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
.++++ +|++ + ++++.+++++.+|++.|.++++ +++||+ |++ |+++|+ +|.+|
T Consensus 20 ~~v~~--iM~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVv~d~~~~~lvGi-------------------vt~~d 75 (153)
T 3oco_A 20 KVASD--VMVDRTS-MSVVDVDETIADALLLYLEEQY--SRFPVTADNDKDKIIGY-------------------AYNYD 75 (153)
T ss_dssp CBHHH--HSEEGGG-CCCEETTSBHHHHHHHHHHHCC--SEEEEEETTEEEEEEEE-------------------EEHHH
T ss_pred CEeee--Eecchhh-eEEEcCCCCHHHHHHHHHhCCC--CEEEEEECCCCCcEEEE-------------------EEHHH
Confidence 34554 5775 6 9999999999999999999999 999999 654 899999 66788
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++..+. ... ..+++++| +++++
T Consensus 76 l~~~~~----------------------------~~~-----------------------------~~~v~~~m-~~~~~ 97 (153)
T 3oco_A 76 IVRQAR----------------------------IDD-----------------------------KAKISTIM-RDIVS 97 (153)
T ss_dssp HHHHHH----------------------------HHT-----------------------------TSBGGGTC-BCCEE
T ss_pred HHhHHh----------------------------cCC-----------------------------CCcHHHHh-CCCeE
Confidence 776321 000 01245678 89999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
+.+++++.+++.+|.+++++++||||++|+++||||++||++++...+..
T Consensus 98 v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d 147 (153)
T 3oco_A 98 VPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD 147 (153)
T ss_dssp EETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred ECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999876543
No 33
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.72 E-value=1.4e-17 Score=146.22 Aligned_cols=143 Identities=14% Similarity=0.168 Sum_probs=105.7
Q ss_pred CCCCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHh
Q 015178 188 TPNQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAG 265 (412)
Q Consensus 188 l~~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~ 265 (412)
+...++++ +|++ + ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..
T Consensus 11 l~~~~v~~--im~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~lvGi-------------------vt~~ 66 (159)
T 1yav_A 11 LLEATVGQ--FMIEADK-VAHVQVGNNLEHALLVLTKTGY--TAIPVLDPSYRLHGL-------------------IGTN 66 (159)
T ss_dssp CTTCBHHH--HSEEGGG-SCCEETTCBHHHHHHHHHHHCC--SEEEEECTTCBEEEE-------------------EEHH
T ss_pred HhHhhHHH--HhCCccc-eEEECCCCcHHHHHHHHHhCCC--cEEEEECCCCCEEEE-------------------eEHH
Confidence 33456665 5776 7 9999999999999999999999 999999999999999 6677
Q ss_pred hhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178 266 DLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI 345 (412)
Q Consensus 266 Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv 345 (412)
|++.+...... + ...+....++.++|.++++
T Consensus 67 dl~~~~~~~~~----------------~---------------------------------~~~~~~~~~v~~~m~~~~~ 97 (159)
T 1yav_A 67 MIMNSIFGLER----------------I---------------------------------EFEKLDQITVEEVMLTDIP 97 (159)
T ss_dssp HHHHHHBCSSS----------------B---------------------------------CGGGTTTSBHHHHSBCSCC
T ss_pred HHHHHhhhhcc----------------c---------------------------------chhhhccCCHHHhcCCCCc
Confidence 77664311000 0 0000111235678888999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhccccCCCCC
Q 015178 346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSMAKAENPNF 405 (412)
Q Consensus 346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~~~~~~~~~ 405 (412)
++.+++++.+++++|.++++ +||||++|+++|+||++||++++.+.........+|.|
T Consensus 98 ~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~~~~~~~~~~~~ 155 (159)
T 1yav_A 98 RLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHIRSLNKEGGSHH 155 (159)
T ss_dssp EEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC-----------
T ss_pred eEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHHHhhcccccccc
Confidence 99999999999999999987 99999889999999999999999998887777777664
No 34
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.72 E-value=1.1e-17 Score=148.15 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=106.4
Q ss_pred cCCCCCCCCcccccCCCC---CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhh
Q 015178 184 LLSPTPNQPINSLNIVDD---AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMV 260 (412)
Q Consensus 184 ~l~~l~~~~i~~L~i~~~---~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~ 260 (412)
....+...++++ +|++ + ++++.+++++.+|+++|.++++ +++||+|++|+++|+
T Consensus 17 ~~~~l~~~~v~d--im~~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi------------------ 73 (165)
T 3fhm_A 17 LYFQGMATFVKD--LLDRKGRD-VVTVGPDVSIGEAAGTLHAHKI--GAVVVTDADGVVLGI------------------ 73 (165)
T ss_dssp CCCSSSSCBHHH--HHHHHCSC-CCEECTTSBHHHHHHHHHHHTC--SEEEEECTTSCEEEE------------------
T ss_pred hhHhhhhcCHHH--HhccCCCC-CeEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCeEEEE------------------
Confidence 344455556665 5664 5 9999999999999999999999 999999999999999
Q ss_pred hcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccc
Q 015178 261 TLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVH 340 (412)
Q Consensus 261 ~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m 340 (412)
+|..|++..+.. . + .. ....++.++|
T Consensus 74 -vt~~dl~~~~~~-------------~----~--------~~----------------------------~~~~~v~~~m 99 (165)
T 3fhm_A 74 -FTERDLVKAVAG-------------Q----G--------AA----------------------------SLQQSVSVAM 99 (165)
T ss_dssp -EEHHHHHHHHHH-------------H----G--------GG----------------------------GGTSBGGGTS
T ss_pred -EEHHHHHHHHHh-------------c----C--------Cc----------------------------cccCCHHHHh
Confidence 667777663210 0 0 00 0012356788
Q ss_pred cCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 341 RSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 341 ~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
.+++++|.+++++.+++++|.+++++++||||+ |+++||||+.||++++.+...
T Consensus 100 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~~ 153 (165)
T 3fhm_A 100 TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEIE 153 (165)
T ss_dssp BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC--
T ss_pred cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999 999999999999999876443
No 35
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=99.72 E-value=3.4e-17 Score=144.77 Aligned_cols=132 Identities=11% Similarity=0.124 Sum_probs=110.0
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
...++.++|+...+++++++ ++|+.+|+++|.+++++++||+|. +++++|+||..||
T Consensus 13 l~~~~~~iM~P~~~v~~v~~-~~t~~~a~~~m~~~~~s~~pVvd~----------------------~~~lvGiit~~Di 69 (156)
T 3k6e_A 13 LLGQEETFLTPAKNLAVLID-THNADHATLLLSQMTYTRVPVVTD----------------------EKQFVGTIGLRDI 69 (156)
T ss_dssp HHTTGGGGEEETTSSCCEET-TSBHHHHHHHHTTSSSSEEEEECC-----------------------CBEEEEEEHHHH
T ss_pred hhccHHHhCcchhHeEEECC-cCCHHHHHHHHHHcCCcEEEEEcC----------------------CCcEEEEEEecch
Confidence 34578999988789999999 999999999999999999999985 3689999999999
Q ss_pred HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178 86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS 164 (412)
Q Consensus 86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~ 164 (412)
+.++..... ........+|+++|... ++++++++++.+|+++|. ++ .+||+++ +|+
T Consensus 70 ~~~~~~~~~--~~~~~~~~~v~~im~~~---~~~v~~~~~l~~~~~~m~~~~--~lpVVd~----------------~g~ 126 (156)
T 3k6e_A 70 MAYQMEHDL--SQEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDES--FLPVVDA----------------EGI 126 (156)
T ss_dssp HHHHHHHTC--CHHHHTTSBGGGTCBCS---CCCBCTTCCHHHHHHHTTTSS--EEEEECT----------------TSB
T ss_pred hhhhhhccc--ccccccccCHHHhhcCC---ceecccccHHHHHHHHHHHcC--CeEEEec----------------CCE
Confidence 998875321 12234568899999865 899999999999999999 54 4888753 368
Q ss_pred eeeeecHHHHHHHHHHccC
Q 015178 165 EYCWLTQEDLIRYFLNCIG 183 (412)
Q Consensus 165 ~v~iITq~DIv~~l~~~~~ 183 (412)
++||||++||++.+....+
T Consensus 127 l~GiiT~~Dil~~~~~~~~ 145 (156)
T 3k6e_A 127 FQGIITRKSILKAVNALLH 145 (156)
T ss_dssp EEEEEEHHHHHHHHHHHSC
T ss_pred EEEEEEHHHHHHHHHHHhc
Confidence 9999999999999876443
No 36
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.72 E-value=3.7e-17 Score=142.66 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=95.0
Q ss_pred CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..|++.+...+.
T Consensus 29 ~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~vGi-------------------vt~~dl~~~~~~~~----- 81 (152)
T 2uv4_A 29 AN-IAMVRTTTPVYVALGIFVQHRV--SALPVVDEKGRVVDI-------------------YSKFDVINLAAEKT----- 81 (152)
T ss_dssp SS-CCCEETTCBHHHHHHHHHHHCC--SEEEEECTTSBEEEE-------------------EEHHHHHHHHHCSS-----
T ss_pred CC-ceEeCCCCcHHHHHHHHHHcCC--ceEeEECCCCcEEEE-------------------EeHHHHHHHhcchh-----
Confidence 56 9999999999999999999999 999999999999999 66777765321100
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc------CCceEeCCCCcHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR------SEAILCHPWSSLM 354 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~------~~vvt~~~~~sl~ 354 (412)
.. ....++.++|. +++++|++++++.
T Consensus 82 ------------~~------------------------------------~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~ 113 (152)
T 2uv4_A 82 ------------YN------------------------------------NLDVSVTKALQHRSHYFEGVLKCYLHETLE 113 (152)
T ss_dssp ------------CC------------------------------------CTTSBGGGGGGTCCHHHHTCSEECTTSBHH
T ss_pred ------------hh------------------------------------hhcchHHHHHhhhhcccCCCeEECCCCcHH
Confidence 00 00011234453 7899999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++|.+++++++||||++|+++||||++||++++.+
T Consensus 114 ~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~l~~ 151 (152)
T 2uv4_A 114 TIINRLVEAEVHRLVVVDENDVVKGIVSLSDILQALVL 151 (152)
T ss_dssp HHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHC-
T ss_pred HHHHHHHHcCCeEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence 99999999999999999998999999999999998754
No 37
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.71 E-value=1.4e-16 Score=147.25 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=103.9
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc---CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS---HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~---~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|+++ ++++.+++++.+|++.|+++ ++ +.+||+|++|+++|+ +|.+|
T Consensus 53 ~~~v~~--iM~~~-~~~v~~~~tv~eal~~~~~~~~~~~--~~~~Vvd~~~~lvGi-------------------vt~~d 108 (205)
T 3kxr_A 53 ENEIGR--YTDHQ-MLVLSDKATVAQAQRFFRRIELDCN--DNLFIVDEADKYLGT-------------------VRRYD 108 (205)
T ss_dssp TTCGGG--GCBCC-CCEEETTCBHHHHHHHHHHCCCTTC--CEEEEECTTCBEEEE-------------------EEHHH
T ss_pred cchHHh--hccCc-eEEECCCCcHHHHHHHHHhhCccCe--eEEEEEcCCCeEEEE-------------------EEHHH
Confidence 445665 78888 99999999999999999997 78 999999999999999 55666
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++.... ..+++++|++++++
T Consensus 109 ll~~~~------------------------------------------------------------~~~v~~im~~~~~~ 128 (205)
T 3kxr_A 109 IFKHEP------------------------------------------------------------HEPLISLLSEDSRA 128 (205)
T ss_dssp HTTSCT------------------------------------------------------------TSBGGGGCCSSCCC
T ss_pred HHhCCC------------------------------------------------------------cchHHHHhcCCCeE
Confidence 653100 01245688889999
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh----hcccc--CCCCCccccc
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR----SMAKA--ENPNFCPVWI 410 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~----~~~~~--~~~~~~~~~~ 410 (412)
+++++++.+++++|.+++++++||||++|+++||||..||++.+.++.. .+++. +.--|-|+|-
T Consensus 129 v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~ed~~~~~g~~~~~~~~~~~~~ 198 (205)
T 3kxr_A 129 LTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEAQLMATAGMDESDDLFAPILK 198 (205)
T ss_dssp EETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC---------------------
T ss_pred ECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHH
Confidence 9999999999999999999999999999999999999999999987543 33332 3335666663
No 38
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.71 E-value=4e-17 Score=141.61 Aligned_cols=130 Identities=14% Similarity=0.197 Sum_probs=102.6
Q ss_pred CcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh
Q 015178 192 PINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA 269 (412)
Q Consensus 192 ~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~ 269 (412)
++++ +|+ .+ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..|++.
T Consensus 16 ~v~~--im~~~~~-~~~v~~~~~l~~a~~~~~~~~~--~~~pVvd~~~~~~Gi-------------------vt~~dl~~ 71 (150)
T 3lqn_A 16 FVKD--LMISSEK-VAHVQIGNGLEHALLVLVKSGY--SAIPVLDPMYKLHGL-------------------ISTAMILD 71 (150)
T ss_dssp BHHH--HSEEGGG-SCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHH
T ss_pred Chhh--cccCCCc-eEEECCCCcHHHHHHHHHHcCC--cEEEEECCCCCEEEE-------------------EEHHHHHH
Confidence 4444 576 45 8999999999999999999999 999999999999999 66777776
Q ss_pred hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178 270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP 349 (412)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~ 349 (412)
.+..... .. .......++.++|.+++++|++
T Consensus 72 ~~~~~~~----------------~~---------------------------------~~~~~~~~v~~~m~~~~~~v~~ 102 (150)
T 3lqn_A 72 GILGLER----------------IE---------------------------------FERLEEMKVEQVMKQDIPVLKL 102 (150)
T ss_dssp HTBCSSS----------------BC---------------------------------GGGGGGCBGGGTCBSSCCEEET
T ss_pred HHHhhcc----------------cc---------------------------------hhHHhcCCHHHHhcCCCceeCC
Confidence 4311000 00 0000112356789999999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
++++.+++++|.++++ +||||++|+++||||++||++++.+....
T Consensus 103 ~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~~~ 147 (150)
T 3lqn_A 103 EDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKVRQ 147 (150)
T ss_dssp TCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHhHh
Confidence 9999999999999997 99999889999999999999999886653
No 39
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.71 E-value=4.2e-17 Score=143.78 Aligned_cols=133 Identities=18% Similarity=0.200 Sum_probs=104.1
Q ss_pred CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh
Q 015178 192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM 271 (412)
Q Consensus 192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~ 271 (412)
++++ +|+++ ++++.+++++.+|+++|.++++ +++||+|++|+++|+ +|..|++.+.
T Consensus 6 ~v~d--im~~~-~~~v~~~~tl~~a~~~m~~~~~--~~~pVvd~~~~lvGi-------------------vt~~dl~~~~ 61 (160)
T 2o16_A 6 KVED--MMTRH-PHTLLRTHTLNDAKHLMEALDI--RHVPIVDANKKLLGI-------------------VSQRDLLAAQ 61 (160)
T ss_dssp BGGG--TSEES-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEE-------------------EEHHHHHHHH
T ss_pred cHHH--HhcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHHH
Confidence 4554 68888 9999999999999999999999 999999988999999 5677776532
Q ss_pred cCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCC
Q 015178 272 DCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWS 351 (412)
Q Consensus 272 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~ 351 (412)
.. .+ ... ... .......++.++|.+++++|++++
T Consensus 62 ~~-------------~~-----~~~---~~~-------------------------~~~~~~~~v~~im~~~~~~v~~~~ 95 (160)
T 2o16_A 62 ES-------------SL-----QRS---AQG-------------------------DSLAFETPLFEVMHTDVTSVAPQA 95 (160)
T ss_dssp HH-------------HC-----C-------------------------------------CCCBHHHHSCSCEEEBCTTS
T ss_pred HH-------------hh-----ccc---ccc-------------------------cchhcccCHHHHhcCCCeEECCCC
Confidence 10 00 000 000 000011235678999999999999
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
++.+++++|.+++++++||||+ |+++||||+.||++++.+.+.
T Consensus 96 ~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~~ 138 (160)
T 2o16_A 96 GLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLLE 138 (160)
T ss_dssp BHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHhc
Confidence 9999999999999999999998 999999999999999887544
No 40
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.71 E-value=1.7e-17 Score=147.77 Aligned_cols=150 Identities=17% Similarity=0.257 Sum_probs=103.6
Q ss_pred CCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 198 IVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 198 i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
+|++ + ++++.+++++.+|+++|.++++ +++||+|++|+++|+||..||.++..... .......+..... .
T Consensus 9 im~~~~~-~~~v~~~~~l~~a~~~m~~~~~--~~~pVvd~~~~~~Givt~~dl~~~~~~~~---~~~~~~~~~~~~~--~ 80 (180)
T 3sl7_A 9 FMTPRQN-LHVVKPSTSVDDALELLVEKKV--TGLPVIDDNWTLVGVVSDYDLLALDSISG---RSQNDTNLFPDVD--S 80 (180)
T ss_dssp HSEEGGG-CCCBCTTSBHHHHHHHHHHHTC--SEEEEECTTCBEEEEEEHHHHTCC------------------------
T ss_pred hcCCCCC-ceeeCCCCcHHHHHHHHHHcCC--CeEEEECCCCeEEEEEEHHHHHhhhhhcc---ccCCccccccccc--c
Confidence 5766 6 9999999999999999999999 99999999999999976666554210000 0000000000000 0
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA 355 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~ 355 (412)
... .+..+...+. .....++.++|++++++|++++++.+
T Consensus 81 ~~~-------------~~~~~~~~~~----------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~ 119 (180)
T 3sl7_A 81 TWK-------------TFNELQKLIS----------------------------KTYGKVVGDLMTPSPLVVRDSTNLED 119 (180)
T ss_dssp CCC-------------SHHHHHHHHH----------------------------TTTTCBHHHHSEESCCCEETTSBHHH
T ss_pred hhh-------------hhHHHHHHHh----------------------------ccccccHHHHhCCCceEeCCCCcHHH
Confidence 000 0000000000 01123467889999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
++++|.+++++++||||++|+++||||++||++++.+....
T Consensus 120 a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~~~ 160 (180)
T 3sl7_A 120 AARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIKRN 160 (180)
T ss_dssp HHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHhhh
Confidence 99999999999999999889999999999999999876553
No 41
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.70 E-value=5.2e-17 Score=136.01 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=97.6
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|+++ ++++.+++++.+|++.|.++++ +.+||+| +|+++|+ +|..|++.+...+
T Consensus 6 ~m~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~G~-------------------it~~dl~~~~~~~--- 59 (125)
T 1pbj_A 6 VMVTD-VDTIDITASLEDVLRNYVENAK--GSSVVVK-EGVRVGI-------------------VTTWDVLEAIAEG--- 59 (125)
T ss_dssp HCBCS-CCEEETTCBHHHHHHHHHHHCC--CEEEEEE-TTEEEEE-------------------EEHHHHHHHHHHT---
T ss_pred hcCCC-ceEECCCCcHHHHHHHHHHcCC--CEEEEEe-CCeeEEE-------------------EeHHHHHHHHhcC---
Confidence 57777 9999999999999999999999 9999999 8999999 6677776532100
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
. . ....++.++|.++++++.+++++.+++
T Consensus 60 -------------------------~------------~--------------~~~~~v~~~m~~~~~~v~~~~~l~~~~ 88 (125)
T 1pbj_A 60 -------------------------D------------D--------------LAEVKVWEVMERDLVTISPRATIKEAA 88 (125)
T ss_dssp -------------------------C------------C--------------TTTSBHHHHCBCGGGEECTTSCHHHHH
T ss_pred -------------------------C------------c--------------ccccCHHHHcCCCCeEECCCCCHHHHH
Confidence 0 0 001124567888999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++|.+++++++||+|+ |+++|+||+.||++++.+
T Consensus 89 ~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 89 EKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA 122 (125)
T ss_dssp HHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred HHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 9999999999999998 999999999999998865
No 42
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.70 E-value=9.5e-17 Score=140.09 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
..++++ +|.+ + ++++.+++++.+|++.|.++++ +++||+|++|+++|+ +|..|+
T Consensus 10 ~~~v~~--im~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~pVvd~~~~~~Gi-------------------vt~~dl 65 (157)
T 2emq_A 10 QMTVKP--FLIPADK-VAHVQPGNYLDHALLVLTKTGY--SAIPVLDTSYKLHGL-------------------ISMTMM 65 (157)
T ss_dssp CCBSTT--TCEEGGG-SCCBCTTSBHHHHHHHHHHSSS--SEEEEECTTCCEEEE-------------------EEHHHH
T ss_pred hCcHHh--hccCCcc-ceEECCCCcHHHHHHHHHHCCc--eEEEEEcCCCCEEEE-------------------eeHHHH
Confidence 445555 5775 6 8999999999999999999999 999999998999999 667777
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+.+...+.... .......++.++|.++++++
T Consensus 66 ~~~~~~~~~~~-------------------------------------------------~~~~~~~~v~~~m~~~~~~v 96 (157)
T 2emq_A 66 MDAILGLERIE-------------------------------------------------FERLETMKVEEVMNRNIPRL 96 (157)
T ss_dssp HHHSBCSSSBC-------------------------------------------------GGGGGTCBGGGTCBCCCCEE
T ss_pred HHHHhcccccc-------------------------------------------------hHHhcCCcHHHHhCCCCcee
Confidence 66432100000 00001123567888999999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
++++++.+++++|.++++ +||||++|+++|+||++||++++.+...
T Consensus 97 ~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 97 RLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp ETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHhh
Confidence 999999999999999988 9999988999999999999999987654
No 43
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.70 E-value=5.7e-17 Score=140.98 Aligned_cols=120 Identities=23% Similarity=0.327 Sum_probs=99.9
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
..++++ +|++ + ++++.+++++.+|++.|.++++ +.+||+|++|+++|+ +|..|+
T Consensus 27 ~~~v~d--im~~~~~-~~~v~~~~~~~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl 82 (149)
T 3k2v_A 27 LLRVND--IMHTGDE-IPHVGLQATLRDALLEITRKNL--GMTAICDDDMNIIGI-------------------FTDGDL 82 (149)
T ss_dssp TSBGGG--TSBCGGG-SCEECTTCBHHHHHHHHHHHTS--SEEEEECTTCBEEEE-------------------EEHHHH
T ss_pred ccCHHH--HhcCCCC-CeEECCCCcHHHHHHHHHhCCC--cEEEEECCCCcEEEE-------------------ecHHHH
Confidence 346665 6887 7 9999999999999999999999 999999999999999 667777
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
+..+..+. + ....++.++|.+++++|
T Consensus 83 ~~~~~~~~--------------------------------------------~----------~~~~~v~~~m~~~~~~v 108 (149)
T 3k2v_A 83 RRVFDTGV--------------------------------------------D----------MRDASIADVMTRGGIRI 108 (149)
T ss_dssp HHHHCSSS--------------------------------------------C----------CTTCBHHHHSEESCCEE
T ss_pred HHHHhcCC--------------------------------------------C----------cccCcHHHHcCCCCeEE
Confidence 76431100 0 00123467888899999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
++++++.+++++|.+++++++||+|++ +++|+||+.||++
T Consensus 109 ~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 109 RPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR 148 (149)
T ss_dssp CTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence 999999999999999999999999986 9999999999985
No 44
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.70 E-value=9.6e-17 Score=140.74 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=102.1
Q ss_pred CcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCce-eEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 192 PINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTS-VALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 192 ~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~-vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
++++ +|+++ ++++.+++++.+|++.|.++++ ++ +||+|++ +++|+ +|..|++.+
T Consensus 17 ~v~~--im~~~-~~~v~~~~tl~ea~~~m~~~~~--~~~~~Vvd~~-~~vGi-------------------vt~~dl~~~ 71 (157)
T 1o50_A 17 DVCK--LISLK-PTVVEEDTPIEEIVDRILEDPV--TRTVYVARDN-KLVGM-------------------IPVMHLLKV 71 (157)
T ss_dssp HHTT--SSCCC-CEEECTTCBHHHHHHHHHHSTT--CCEEEEEETT-EEEEE-------------------EEHHHHHHH
T ss_pred cHhh--cccCC-CceECCCCCHHHHHHHHHhCCC--CccEEEEECC-EEEEE-------------------EEHHHHHHH
Confidence 4443 68888 9999999999999999999999 99 9999988 99999 556666553
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
... .+ ...+... ..+.. ........++.++|.+ +++++++
T Consensus 72 ~~~-------------~~-~~~~~~~-~~~~~------------------------~~~~~~~~~v~~im~~-~~~v~~~ 111 (157)
T 1o50_A 72 SGF-------------HF-FGFIPKE-ELIRS------------------------SMKRLIAKNASEIMLD-PVYVHMD 111 (157)
T ss_dssp HHH-------------HH-HCCCC--------------------------------CCCCCSSCBHHHHCBC-CCCBCTT
T ss_pred Hhh-------------hH-HhhhccH-HHHHH------------------------HHHHHcCCcHHHHcCC-CeEECCC
Confidence 210 00 0000000 00000 0001112346788988 9999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++.+++++|.+++++++||||++|+++|+||+.||++++.+.
T Consensus 112 ~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 112 TPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp SBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence 9999999999999999999999889999999999999998764
No 45
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.70 E-value=1.8e-17 Score=140.79 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=99.9
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhh-
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMA- 269 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~- 269 (412)
.++++ +|.++ ++++.+++++.+|++.|.++++ +++||+|++|+++|+ ++.+|++.
T Consensus 8 ~~v~~--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd~~~~~~Gi-------------------vt~~dl~~~ 63 (133)
T 1y5h_A 8 TTARD--IMNAG-VTCVGEHETLTAAAQYMREHDI--GALPICGDDDRLHGM-------------------LTDRDIVIK 63 (133)
T ss_dssp CCHHH--HSEET-CCCEETTSBHHHHHHHHHHHTC--SEEEEECGGGBEEEE-------------------EEHHHHHHT
T ss_pred cCHHH--HhcCC-ceEeCCCCCHHHHHHHHHHhCC--CeEEEECCCCeEEEE-------------------EeHHHHHHH
Confidence 35554 57777 9999999999999999999999 999999988999999 66777763
Q ss_pred hhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCC
Q 015178 270 YMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHP 349 (412)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~ 349 (412)
++..+. . ....++.++|.++++++++
T Consensus 64 ~~~~~~----------------------------------------~--------------~~~~~v~~~m~~~~~~v~~ 89 (133)
T 1y5h_A 64 GLAAGL----------------------------------------D--------------PNTATAGELARDSIYYVDA 89 (133)
T ss_dssp TGGGTC----------------------------------------C--------------TTTSBHHHHHTTCCCCEET
T ss_pred HHhcCC----------------------------------------C--------------ccccCHHHHhcCCCEEECC
Confidence 221000 0 0011245678889999999
Q ss_pred CCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 350 WSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 350 ~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++++.+++++|.+++++++||+|+ |+++|+||+.||++++.+
T Consensus 90 ~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 90 NASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 999999999999999999999998 899999999999987653
No 46
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.70 E-value=9.4e-17 Score=144.78 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=103.8
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAY 270 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~ 270 (412)
.++++ +|+++ ++++++++++.+|+++|.++++ +++||+|++|+++|+ ++..|++.+
T Consensus 9 ~~v~~--im~~~-~~~v~~~~~l~ea~~~~~~~~~--~~~pVvd~~g~~vGi-------------------vt~~dl~~~ 64 (184)
T 1pvm_A 9 MRVEK--IMNSN-FKTVNWNTTVFDAVKIMNENHL--YGLVVKDDNGNDVGL-------------------LSERSIIKR 64 (184)
T ss_dssp CBGGG--TSBTT-CCEEETTCBHHHHHHHHHHHTC--CEEEEECTTSCEEEE-------------------EEHHHHHHH
T ss_pred cCHHH--hcCCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEcCCCcEEEE-------------------EeHHHHHHH
Confidence 45665 68888 9999999999999999999999 999999988999999 667777653
Q ss_pred hcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCC
Q 015178 271 MDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPW 350 (412)
Q Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~ 350 (412)
... .. . .....+++++|.++++++.++
T Consensus 65 ~~~----------------------------~~------------~-------------~~~~~~v~~im~~~~~~v~~~ 91 (184)
T 1pvm_A 65 FIP----------------------------RN------------K-------------KPDEVPIRLVMRKPIPKVKSD 91 (184)
T ss_dssp TGG----------------------------GC------------C-------------CGGGSBGGGTSBSSCCEEETT
T ss_pred Hhh----------------------------cc------------c-------------CcccCCHHHHhCCCCcEECCC
Confidence 210 00 0 000123567888899999999
Q ss_pred CcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 351 SSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 351 ~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++.+++++|.+++++++||||++|+++|+||+.||++++..
T Consensus 92 ~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 92 YDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp CBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred CCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence 999999999999999999999998999999999999988776
No 47
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.69 E-value=7.4e-17 Score=145.01 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=101.4
Q ss_pred CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC-CcEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE-GRLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~-g~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|+ ++ ++++.+++++.+|+++|.++++ +++||+|++ |+++|+ ++.+|
T Consensus 35 ~~~v~d--iM~~~~~-v~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~D 90 (173)
T 3ocm_A 35 ERSIRS--IMTPRTD-VSWVNIDDDAATIRQQLTAAPH--SFFPVCRGSLDEVVGI-------------------GRAKD 90 (173)
T ss_dssp TSCSTT--TSEEGGG-CCCEETTSCHHHHHHHHHHSSC--SEEEEESSSTTSEEEE-------------------EEHHH
T ss_pred CCCHHH--hCCcHHH-eEEEeCCCCHHHHHHHHHhCCC--CEEEEEeCCCCCEEEE-------------------EEHHH
Confidence 345554 676 35 9999999999999999999999 999999987 899999 66788
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++.... ... ..++. |.+++++
T Consensus 91 l~~~~~----------------------------~~~-----------------------------~~~v~--~~~~~~~ 111 (173)
T 3ocm_A 91 LVADLI----------------------------TEG-----------------------------RVRRN--RLRDPII 111 (173)
T ss_dssp HHHHHH----------------------------HHS-----------------------------SCCGG--GSBCCCE
T ss_pred HHHHHh----------------------------cCC-----------------------------cchhH--hcCCCeE
Confidence 776320 000 00123 4478899
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
+.+++++.+++.+|.+++++++||||++|+++||||+.||++++...+..
T Consensus 112 v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~d 161 (173)
T 3ocm_A 112 VHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPD 161 (173)
T ss_dssp ECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCC
T ss_pred ECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCC
Confidence 99999999999999999999999999999999999999999999875543
No 48
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.69 E-value=4.3e-17 Score=142.53 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=102.9
Q ss_pred CCcccccCCC--CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178 191 QPINSLNIVD--DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM 268 (412)
Q Consensus 191 ~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~ 268 (412)
.++++ +|+ ++ ++++.+++++.+|+++|.++++ +++||+|++|+++|+ +|.+|++
T Consensus 15 ~~v~d--im~p~~~-~~~v~~~~~l~~a~~~m~~~~~--~~~~Vvd~~~~~~Gi-------------------it~~dl~ 70 (156)
T 3ctu_A 15 GQEET--FLTPAKN-LAVLIDTHNADHATLLLSQMTY--TRVPVVTDEKQFVGT-------------------IGLRDIM 70 (156)
T ss_dssp TTGGG--GEEEGGG-CCCEETTSBHHHHHHHHTTCSS--SEEEEECC-CBEEEE-------------------EEHHHHH
T ss_pred HHHHH--HcCcccC-ceEECCCCCHHHHHHHHHHCCC--ceEeEECCCCEEEEE-------------------EcHHHHH
Confidence 45555 577 56 9999999999999999999999 999999999999999 6677776
Q ss_pred hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeC
Q 015178 269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCH 348 (412)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~ 348 (412)
.....+ .... . .....++.++|.+++++++
T Consensus 71 ~~~~~~-----------------~~~~--~-------------------------------~~~~~~v~~~m~~~~~~v~ 100 (156)
T 3ctu_A 71 AYQMEH-----------------DLSQ--E-------------------------------IMADTDIVHMTKTDVAVVS 100 (156)
T ss_dssp HHHHHH-----------------TCCH--H-------------------------------HHTTSBGGGGCBCSCCCBC
T ss_pred HHHHhc-----------------cccc--c-------------------------------ccccCcHHHhccCCceeeC
Confidence 643100 0000 0 0001235678889999999
Q ss_pred CCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhhc
Q 015178 349 PWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRSM 397 (412)
Q Consensus 349 ~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~~ 397 (412)
+++++.+++++|.+++ ++||||++|+++|+||++||++++.+.+...
T Consensus 101 ~~~~l~~a~~~~~~~~--~lpVvd~~g~~~Giit~~dil~~l~~~~~~~ 147 (156)
T 3ctu_A 101 PDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALLHDF 147 (156)
T ss_dssp SSCCHHHHHHHTTTSS--EEEEECTTSBEEEEEETTHHHHHHHHHSCC-
T ss_pred CCCcHHHHHHHHHHcC--eEEEEcCCCeEEEEEEHHHHHHHHHHHHHhh
Confidence 9999999999999986 7999998899999999999999998876543
No 49
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.69 E-value=1.1e-16 Score=136.32 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=97.8
Q ss_pred CCC---CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhh-cC
Q 015178 198 IVD---DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYM-DC 273 (412)
Q Consensus 198 i~~---~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~-~~ 273 (412)
+|+ ++ ++++++++++.+|++.|.++++ +++||+| +|+++|+ +|..|++..+ ..
T Consensus 11 im~~~~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~Vvd-~~~~~Gi-------------------vt~~dl~~~~~~~ 67 (135)
T 2rc3_A 11 LLQEKGHT-VVAIGPDDSVFNAMQKMAADNI--GALLVMK-DEKLVGI-------------------LTERDFSRKSYLL 67 (135)
T ss_dssp HHHHHCCC-CCEECTTSBHHHHHHHHHHHTC--SEEEEEE-TTEEEEE-------------------EEHHHHHHHGGGS
T ss_pred HHhcCCCC-cEEECCCCcHHHHHHHHHhcCC--CEEEEEE-CCEEEEE-------------------EehHHHHHHHHHc
Confidence 576 67 9999999999999999999999 9999998 7899999 6677776421 10
Q ss_pred CCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcH
Q 015178 274 GRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSL 353 (412)
Q Consensus 274 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl 353 (412)
+ .. ....++.++|.++++++++++++
T Consensus 68 ~------------------~~------------------------------------~~~~~v~~~m~~~~~~v~~~~~l 93 (135)
T 2rc3_A 68 D------------------KP------------------------------------VKDTQVKEIMTRQVAYVDLNNTN 93 (135)
T ss_dssp S------------------SC------------------------------------GGGSBGGGTSBCSCCCBCTTCBH
T ss_pred C------------------CC------------------------------------cccCCHHHhccCCCeEECCCCcH
Confidence 0 00 00123567888999999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
.+++++|.+++++++||+| +|+++|+||+.||++++.++
T Consensus 94 ~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 94 EDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp HHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence 9999999999999999999 69999999999999998754
No 50
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.68 E-value=3.4e-16 Score=147.42 Aligned_cols=201 Identities=12% Similarity=0.157 Sum_probs=126.6
Q ss_pred cCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 102 LQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 102 l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+..+|+++|... ++++++++++.+|+++|. ++++++||+++ +++++|+||..|+++++..
T Consensus 5 ~~~~v~~im~~~---~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~----------------~~~l~Giit~~di~~~~~~ 65 (245)
T 3l2b_A 5 VKLKVEDLEMDK---IAPLAPEVSLKMAWNIMRDKNLKSIPVADG----------------NNHLLGMLSTSNITATYMD 65 (245)
T ss_dssp CCCBGGGSCCBC---CCCBCTTCBHHHHHHHHHHTTCSEEEEECT----------------TCBEEEEEEHHHHHHHHHC
T ss_pred ccCcHHHhcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCEEEEEEEHHHHHHHHHH
Confidence 457899999855 899999999999999999 89999999863 3678999999999998754
Q ss_pred ccCc----------------C---------------C-----CCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcC
Q 015178 181 CIGL----------------L---------------S-----PTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSH 224 (412)
Q Consensus 181 ~~~~----------------l---------------~-----~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~ 224 (412)
.... + + ......+. ..+..+.++ +..+ -.++.+.+.+++
T Consensus 66 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~--~~~~~~~iv-Ivgd--r~~~~~~~i~~~ 140 (245)
T 3l2b_A 66 IWDSNILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLK--EFISEGDIA-IAGD--RAEIQAELIELK 140 (245)
T ss_dssp CCCTTHHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGG--GTCCTTCEE-EECS--CHHHHHHHHHTT
T ss_pred hhhhhhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHH--hcCCCCCEE-EECC--CHHHHHHHHHcC
Confidence 2100 0 0 00001111 123444244 3333 377899999999
Q ss_pred CCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhh
Q 015178 225 INQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDL 304 (412)
Q Consensus 225 i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 304 (412)
+ +++.+.+... +-.. +.. .....++--... +...+ . .. ...
T Consensus 141 ~--~~liit~~~~-~~~~-----v~~----------~a~~~~~~~i~t---~~d~~-~----------~~---~~~---- 181 (245)
T 3l2b_A 141 V--SLLIVTGGHT-PSKE-----IIE----------LAKKNNITVITT---PHDSF-T----------AS---RLI---- 181 (245)
T ss_dssp C--SEEEECTTCC-CCHH-----HHH----------HHHHHTCEEEEC---SSCHH-H----------HH---HHG----
T ss_pred C--CEEEECCCCC-CCHH-----HHH----------HHHHcCCeEEEe---CCChH-H----------HH---HHH----
Confidence 9 9888875321 1000 000 000000000000 00000 0 00 000
Q ss_pred cccCCCCCCCCCCCccccccccccccccCcccccccc-CCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEeh
Q 015178 305 EISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-SEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTF 383 (412)
Q Consensus 305 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~ 383 (412)
....+++++|+ ++++++++++++.+++++|.+++++++||||++|+++||||+
T Consensus 182 --------------------------~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~ 235 (245)
T 3l2b_A 182 --------------------------VQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIAR 235 (245)
T ss_dssp --------------------------GGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEC
T ss_pred --------------------------hcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEH
Confidence 00123678899 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 015178 384 TGMLRVIR 391 (412)
Q Consensus 384 ~DIL~~l~ 391 (412)
.|++++..
T Consensus 236 ~dll~~~~ 243 (245)
T 3l2b_A 236 FHLISTHK 243 (245)
T ss_dssp C-------
T ss_pred HHhhchhh
Confidence 99998754
No 51
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.68 E-value=2.5e-16 Score=146.01 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=98.3
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++ ++++.+++++.+|+++|.++++ +++||+|++|+++|+| |.+|++....
T Consensus 18 ~~~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~l~Giv-------------------t~~dl~~~~~----- 70 (213)
T 1vr9_A 18 WVTQD-FPMVEESATVRECLHRMRQYQT--NECIVKDREGHFRGVV-------------------NKEDLLDLDL----- 70 (213)
T ss_dssp GCBSC-SCEEETTCBHHHHHHHHHHTTS--SEEEEECTTSBEEEEE-------------------EGGGGTTSCT-----
T ss_pred hhcCC-CeEECCCCcHHHHHHHHHHCCC--CEEEEEcCCCEEEEEE-------------------EHHHHHhhcC-----
Confidence 68888 9999999999999999999999 9999999889999995 4555543210
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
..++.++|+++++++++++++.+++
T Consensus 71 -------------------------------------------------------~~~v~~im~~~~~~v~~~~~l~~a~ 95 (213)
T 1vr9_A 71 -------------------------------------------------------DSSVFNKVSLPDFFVHEEDNITHAL 95 (213)
T ss_dssp -------------------------------------------------------TSBSGGGCBCTTCCEETTSBHHHHH
T ss_pred -------------------------------------------------------CCcHHHHccCCCEEECCCCcHHHHH
Confidence 0113567888999999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
++|.+++++++||||++|+++||||.+||++++...
T Consensus 96 ~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 96 LLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp HHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHS
T ss_pred HHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHH
Confidence 999999999999999889999999999999988754
No 52
>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}
Probab=99.68 E-value=5.2e-16 Score=134.54 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=109.3
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|...+|+|+|....+++++++ ++|+.+|++.|.+++++++||+|.+ .++++|+|+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~ 76 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYE-SDSEEKILAILKEEGVTRYPVCRKN---------------------KDDILGFVHIR 76 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEET-TCCHHHHHHHHHHSCCSEEEEESSS---------------------TTSEEEEEEHH
T ss_pred ccCCCCHHHccccHHHeEEECC-CCCHHHHHHHHHHCCCCEEEEEcCC---------------------CCcEEEEEEHH
Confidence 3668899999975448999999 9999999999999999999999853 15899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+..+.+.. ..+++++| .. +.++.+++++.+|++.|. ++++++||+++ +
T Consensus 77 dl~~~~~~~~---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------------~ 127 (148)
T 3lv9_A 77 DLYNQKINEN---------KIELEEIL-RD---IIYISENLTIDKALERIRKEKLQLAIVVDE----------------Y 127 (148)
T ss_dssp HHHHHHHHHS---------CCCGGGTC-BC---CEEEETTSBHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred HHHHHHhcCC---------CccHHHhc-CC---CeEECCCCCHHHHHHHHHhcCCeEEEEEeC----------------C
Confidence 9999876531 57799999 55 789999999999999999 89999999863 3
Q ss_pred CCeeeeecHHHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~ 180 (412)
++.+|+||..||++.+..
T Consensus 128 g~~~Giit~~dil~~l~~ 145 (148)
T 3lv9_A 128 GGTSGVVTIEDILEEIVG 145 (148)
T ss_dssp SSEEEEEEHHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHhC
Confidence 678999999999998864
No 53
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.67 E-value=2.4e-16 Score=138.47 Aligned_cols=116 Identities=17% Similarity=0.293 Sum_probs=94.2
Q ss_pred CCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC-cEeeeecCCccCCcchhHHHhhhhcCHhh
Q 015178 190 NQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG-RLVGDISPFSFNSCDETVAAAMVTLSAGD 266 (412)
Q Consensus 190 ~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g-~lvG~IS~~dl~~~~~~~~~~~~~ls~~D 266 (412)
..++++ +|++ + ++++++++++.+|++.|.++++ +++||+|+++ +++|+ ++.+|
T Consensus 37 ~~~v~d--iM~~~~~-~~~v~~~~~i~~a~~~m~~~~~--~~~pVvd~~~~~lvGi-------------------vt~~d 92 (156)
T 3oi8_A 37 DLEVRD--AMITRSR-MNVLKENDSIERITAYVIDTAH--SRFPVIGEDKDEVLGI-------------------LHAKD 92 (156)
T ss_dssp TCBGGG--TCEEGGG-CCCEETTCCHHHHHHHHHHHCC--SEEEEESSSTTCEEEE-------------------EEGGG
T ss_pred CCCHhh--eeeeHHH-eEEECCCCCHHHHHHHHHHCCC--CEEEEEcCCCCcEEEE-------------------EEHHH
Confidence 345665 6875 5 9999999999999999999999 9999999885 99999 45566
Q ss_pred hhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceE
Q 015178 267 LMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAIL 346 (412)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt 346 (412)
++..... + . ..++.++|+ ++++
T Consensus 93 l~~~~~~------------------~----------~-----------------------------~~~v~~im~-~~~~ 114 (156)
T 3oi8_A 93 LLKYMFN------------------P----------E-----------------------------QFHLKSILR-PAVF 114 (156)
T ss_dssp GGGGSSC------------------G----------G-----------------------------GCCHHHHCB-CCCE
T ss_pred HHHHHHc------------------C----------C-----------------------------cccHHHHcC-CCEE
Confidence 5543210 0 0 011345675 4899
Q ss_pred eCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHH
Q 015178 347 CHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGML 387 (412)
Q Consensus 347 ~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL 387 (412)
+++++++.+++++|.+++++++||||++|+++||||+.||+
T Consensus 115 v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil 155 (156)
T 3oi8_A 115 VPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155 (156)
T ss_dssp EETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred ECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence 99999999999999999999999999999999999999986
No 54
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=99.67 E-value=1.8e-16 Score=134.71 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=105.4
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|.+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||+|.+ .++++|+|+..
T Consensus 2 ~l~~~~v~~iM~~~~~v~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~~Givt~~ 59 (130)
T 3i8n_A 2 NAQDVPVTQVMTPRPVVFRVDA-TMTINEFLDKHKDTPFSRPLVYSEQ---------------------KDNIIGFVHRL 59 (130)
T ss_dssp -----CCTTTSCCBCCCCEEET-TSBHHHHHHHTTTCSCSCCEEESSS---------------------TTCEEEECCHH
T ss_pred CcCcCCHhhCCCcHHHEEEEcC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCcEEEEEEHH
Confidence 4678999999976567899999 9999999999999999999999953 26899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+..+.+.. ...+++++|. . +.++.+++++.+|++.|. ++++++||+++ +
T Consensus 60 dl~~~~~~~~--------~~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~ 111 (130)
T 3i8n_A 60 ELFKMQQSGS--------GQKQLGAVMR-P---IQVVLNNTALPKVFDQMMTHRLQLALVVDE----------------Y 111 (130)
T ss_dssp HHHHHHHTTT--------TTSBHHHHSE-E---CCEEETTSCHHHHHHHHHHHTCCEEEEECT----------------T
T ss_pred HHHHHHhcCC--------CcCCHHHHhc-C---CcCcCCCCcHHHHHHHHHHcCCeEEEEEcC----------------C
Confidence 9999876421 1467999994 2 689999999999999999 89999999863 3
Q ss_pred CCeeeeecHHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFL 179 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~ 179 (412)
++++|+||..||++.+.
T Consensus 112 g~~vGivt~~dil~~l~ 128 (130)
T 3i8n_A 112 GTVLGLVTLEDIFEHLV 128 (130)
T ss_dssp SCEEEEEEHHHHHHHHH
T ss_pred CCEEEEEEHHHHHHHHc
Confidence 67899999999999875
No 55
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=99.67 E-value=2.3e-16 Score=136.81 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=112.1
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|.+++|+|+|..+.+++++++ ++|+.+|++.|.++++.++||+|. +++++|+||..
T Consensus 11 ~l~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~pVvd~----------------------~~~~~Givt~~ 67 (150)
T 3lqn_A 11 EFQQIFVKDLMISSEKVAHVQI-GNGLEHALLVLVKSGYSAIPVLDP----------------------MYKLHGLISTA 67 (150)
T ss_dssp HHHHCBHHHHSEEGGGSCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred hhhcCChhhcccCCCceEEECC-CCcHHHHHHHHHHcCCcEEEEECC----------------------CCCEEEEEEHH
Confidence 4678999999975457999999 999999999999999999999995 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+.++...... ........+|+++|... ++++.+++++.+|++.|. +++ +||+++ +
T Consensus 68 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~----------------~ 125 (150)
T 3lqn_A 68 MILDGILGLERI-EFERLEEMKVEQVMKQD---IPVLKLEDSFAKALEMTIDHPF--ICAVNE----------------D 125 (150)
T ss_dssp HHHHHTBCSSSB-CGGGGGGCBGGGTCBSS---CCEEETTCBHHHHHHHHHHCSE--EEEECT----------------T
T ss_pred HHHHHHHhhccc-chhHHhcCCHHHHhcCC---CceeCCCCCHHHHHHHHHhCCE--EEEECC----------------C
Confidence 999998643221 11233467899999855 889999999999999999 776 888853 3
Q ss_pred CCeeeeecHHHHHHHHHHccC
Q 015178 163 DSEYCWLTQEDLIRYFLNCIG 183 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~~ 183 (412)
++.+|+||+.||++++.+...
T Consensus 126 g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 126 GYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp CBEEEEEEHHHHHHHHHHHC-
T ss_pred CcEEEEEEHHHHHHHHHHHhH
Confidence 679999999999999987543
No 56
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=2.3e-16 Score=134.45 Aligned_cols=125 Identities=9% Similarity=0.109 Sum_probs=105.5
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+ +++++|+|+..||+
T Consensus 1 ~~~v~~iM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVv~~~---------------------~~~lvGivt~~dl~ 58 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDI-NDDWKSIVRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVREAY 58 (130)
T ss_dssp CCBHHHHSEEGGGCCEEET-TSCHHHHHHHHHTCSSSEEEEESSS---------------------GGGEEEEEEHHHHH
T ss_pred CcCHHHhCccHHHEEEEcC-CCCHHHHHHHHHHCCCCeEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence 3579999975557999999 9999999999999999999999742 36899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
+.+.+.... ...+++++|. . ++++.+++++.+|++.|. ++++++||+++ ++++
T Consensus 59 ~~~~~~~~~------~~~~v~~~m~-~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~g~l 112 (130)
T 3hf7_A 59 RLMTEKKEF------TKEIMLRAAD-E---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDE----------------YGDI 112 (130)
T ss_dssp HHHTSSSCC------CHHHHHHHSB-C---CCEEETTCBHHHHHHHHHHHCCCEEEEECT----------------TSCE
T ss_pred HHHhccCcc------chhhHHHhcc-C---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcC----------------CCCE
Confidence 987653211 1356899993 3 689999999999999999 89999999863 3678
Q ss_pred eeeecHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFL 179 (412)
Q Consensus 166 v~iITq~DIv~~l~ 179 (412)
+||||..||++.+.
T Consensus 113 vGiit~~Dil~~l~ 126 (130)
T 3hf7_A 113 QGLVTVEDILEEIV 126 (130)
T ss_dssp EEEEEHHHHHHHHH
T ss_pred EEEeeHHHHHHHHh
Confidence 99999999999875
No 57
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.66 E-value=6e-16 Score=135.60 Aligned_cols=129 Identities=14% Similarity=0.199 Sum_probs=98.9
Q ss_pred CCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhh
Q 015178 191 QPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLM 268 (412)
Q Consensus 191 ~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~ 268 (412)
.++++ +|+++ ++++++++++.+|+++|.++++ +++||+|+ +|+++|+ +|..|++
T Consensus 13 ~~v~d--im~~~-~~~v~~~~~~~~a~~~~~~~~~--~~~pVvd~~~~~~~~Gi-------------------vt~~dl~ 68 (164)
T 2pfi_A 13 VRVEH--FMNHS-ITTLAKDTPLEEVVKVVTSTDV--TEYPLVESTESQILVGI-------------------VQRAQLV 68 (164)
T ss_dssp CBHHH--HCBCC-CCCEETTCBHHHHHHHHHTCCC--SEEEEESCTTTCBEEEE-------------------EEHHHHH
T ss_pred CCHHH--HcCCC-CeEECCCCcHHHHHHHHHhCCC--CceeEEecCCCCEEEEE-------------------EEHHHHH
Confidence 44554 68888 9999999999999999999999 99999996 7899999 5677776
Q ss_pred hhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC-----
Q 015178 269 AYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE----- 343 (412)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~----- 343 (412)
.+...+.+ .. .. . ...++.++|..+
T Consensus 69 ~~~~~~~~------------------~~---~~--------------~---------------~~~~v~~~m~~~~~~~~ 98 (164)
T 2pfi_A 69 QALQAEPP------------------SR---AP--------------G---------------HQQCLQDILARGCPTEP 98 (164)
T ss_dssp HHHHC------------------------------------------C---------------CCCBHHHHHHTTCCCBC
T ss_pred HHHHhhcc------------------cc---CC--------------c---------------ccchhhhhhcccccccC
Confidence 54311000 00 00 0 000122334333
Q ss_pred -ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178 344 -AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 344 -vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~ 394 (412)
+++|++++++.+++++|.+++++++|||| +|+++||||++||++++.+..
T Consensus 99 ~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 99 VTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT 149 (164)
T ss_dssp CCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred CceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence 78999999999999999999999999999 689999999999999998754
No 58
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=99.66 E-value=5.4e-16 Score=136.38 Aligned_cols=131 Identities=13% Similarity=0.144 Sum_probs=110.3
Q ss_pred cccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 2 AVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 2 ~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
..+|..++|+|+|. + .+++++ ++|+.+|++.|.++++.++||+|. +++++|+|+
T Consensus 11 ~~~l~~~~v~~im~--~-~~~v~~-~~~~~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt 64 (159)
T 3fv6_A 11 ADKLKKLQVKDFQS--I-PVVIHE-NVSVYDAICTMFLEDVGTLFVVDR----------------------DAVLVGVLS 64 (159)
T ss_dssp HHHHTTCBGGGSCB--C-CCEEET-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEE
T ss_pred HHHHhhCCHHHHcC--C-CEEECC-CCcHHHHHHHHHHCCCCEEEEEcC----------------------CCcEEEEEe
Confidence 35678899999996 3 459999 999999999999999999999995 368999999
Q ss_pred hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
..||+..+.... .....+|+++|... .++++++++++|.+|++.|. ++++++||+++
T Consensus 65 ~~dl~~~~~~~~------~~~~~~v~~~m~~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------------- 122 (159)
T 3fv6_A 65 RKDLLRASIGQQ------ELTSVPVHIIMTRM-PNITVCRREDYVMDIAKHLIEKQIDALPVIKD--------------- 122 (159)
T ss_dssp HHHHHHHHTSCS------CTTTCBGGGTSEET-TSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEE---------------
T ss_pred HHHHHHHhhccC------cccCcCHHHHHcCC-CCcEEECCCCCHHHHHHHHHHcCCcEEEEEeC---------------
Confidence 999999875422 12357899999751 13889999999999999999 99999999864
Q ss_pred CCC---CeeeeecHHHHHHHHHHc
Q 015178 161 HND---SEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 161 ~~~---~~v~iITq~DIv~~l~~~ 181 (412)
++ +++|+||..||++++.+-
T Consensus 123 -~g~~~~~vGiit~~dil~~l~~~ 145 (159)
T 3fv6_A 123 -TDKGFEVIGRVTKTNMTKILVSL 145 (159)
T ss_dssp -CSSSEEEEEEEEHHHHHHHHHHH
T ss_pred -CCcceeEEEEEEHHHHHHHHHHH
Confidence 24 789999999999999873
No 59
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Probab=99.66 E-value=1e-15 Score=129.81 Aligned_cols=127 Identities=12% Similarity=0.149 Sum_probs=108.8
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
|.+.+++++|. ++++++++ ++|+.+|++.|.++++.++||+| + ++++|+|+..|
T Consensus 1 l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt~~d 54 (133)
T 2ef7_A 1 MEEEIVKEYMK--TQVISVTK-DAKLNDIAKVMTEKNIGSVIVVD-G----------------------NKPVGIITERD 54 (133)
T ss_dssp CCCCBGGGTSB--CSCCEEET-TCBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEEHHH
T ss_pred CCcccHHHhcc--CCCEEECC-CCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEcHHH
Confidence 46789999995 56899999 99999999999999999999999 3 58999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
++.++.... ....+++++|... +.++++++++.+|++.|. ++++++||+++ ++
T Consensus 55 l~~~~~~~~-------~~~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~g 108 (133)
T 2ef7_A 55 IVKAIGKGK-------SLETKAEEFMTAS---LITIREDSPITGALALMRQFNIRHLPVVDD----------------KG 108 (133)
T ss_dssp HHHHHHTTC-------CTTCBGGGTSEEC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------TS
T ss_pred HHHHHhcCC-------CcccCHHHHcCCC---CEEECCCCCHHHHHHHHHHcCCCEEEEECC----------------CC
Confidence 998876521 1247899999754 889999999999999999 89999999863 36
Q ss_pred CeeeeecHHHHHHHHHHccC
Q 015178 164 SEYCWLTQEDLIRYFLNCIG 183 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~~~~ 183 (412)
+.+|+||..||++++.+...
T Consensus 109 ~~~Giit~~dll~~~~~~~~ 128 (133)
T 2ef7_A 109 NLKGIISIRDITRAIDDMFE 128 (133)
T ss_dssp CEEEEEEHHHHHHHHHHHC-
T ss_pred eEEEEEEHHHHHHHHHHHHH
Confidence 78999999999999987544
No 60
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.65 E-value=3.1e-16 Score=137.13 Aligned_cols=118 Identities=14% Similarity=0.236 Sum_probs=97.2
Q ss_pred CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchh
Q 015178 201 DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDL 280 (412)
Q Consensus 201 ~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~ 280 (412)
++ ++++.+++++.+|++.|.++++ +.+||+| +|+++|+ +|..|++..+..
T Consensus 21 ~~-~~~v~~~~~~~~a~~~~~~~~~--~~~~V~~-~~~~~Gi-------------------vt~~dl~~~~~~------- 70 (157)
T 4fry_A 21 RT-IYTVTKNDFVYDAIKLMAEKGI--GALLVVD-GDDIAGI-------------------VTERDYARKVVL------- 70 (157)
T ss_dssp CC-CCEEETTSBHHHHHHHHHHHTC--SEEEEES-SSSEEEE-------------------EEHHHHHHHSGG-------
T ss_pred CC-CeEECCCCcHHHHHHHHHHcCC--CEEEEee-CCEEEEE-------------------EEHHHHHHHHHh-------
Confidence 44 8999999999999999999999 9999965 7899999 667777664210
Q ss_pred HHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHHHHH
Q 015178 281 VRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVIMQA 360 (412)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~~~m 360 (412)
.. . .....++.++|.++++++.+++++.+++++|
T Consensus 71 ---------------------~~------------~-------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m 104 (157)
T 4fry_A 71 ---------------------QE------------R-------------SSKATRVEEIMTAKVRYVEPSQSTDECMALM 104 (157)
T ss_dssp ---------------------GT------------C-------------CSSSCBHHHHSBSSCCCBCTTSBHHHHHHHH
T ss_pred ---------------------cc------------C-------------CccccCHHHHcCCCCcEECCCCcHHHHHHHH
Confidence 00 0 0001235678889999999999999999999
Q ss_pred HHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 361 LARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 361 ~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
.+++++++||+| +|+++|+||+.||++++.....
T Consensus 105 ~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~~ 138 (157)
T 4fry_A 105 TEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQQ 138 (157)
T ss_dssp HHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC
T ss_pred HHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHHH
Confidence 999999999999 6899999999999999987544
No 61
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=99.65 E-value=7.9e-16 Score=137.47 Aligned_cols=126 Identities=15% Similarity=0.137 Sum_probs=106.3
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|...+|+|+|...++++++++ ++|+.+|++.|.+++++++||+|.+ .++++|+|+..
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~ 95 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDL-NLPLDANLRTVMQSPHSRFPVCRNN---------------------VDDMVGIISAK 95 (172)
T ss_dssp -----CTTTTSEEGGGCCCEET-TSCHHHHHHHHHTCCCSEEEEESSS---------------------TTSEEEEEEHH
T ss_pred ccCCCCHHHhCccHHHeEEEcC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCeEEEEEEHH
Confidence 3567889999975567999999 9999999999999999999999852 16899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+..+.+.. ..+|+++| .. ++++.+++++.+|++.|. ++++++||+++ +
T Consensus 96 dl~~~~~~~~---------~~~v~~im-~~---~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~----------------~ 146 (172)
T 3lhh_A 96 QLLSESIAGE---------RLELVDLV-KN---CNFVPNSLSGMELLEHFRTTGSQMVFVVDE----------------Y 146 (172)
T ss_dssp HHHHHHHTTC---------CCCGGGGC-BC---CEEEETTCCHHHHHHHHHHHTCSEEEEECT----------------T
T ss_pred HHHHHHhhcC---------cccHHHHh-cC---CeEeCCCCCHHHHHHHHHHcCCeEEEEEeC----------------C
Confidence 9999876421 46799999 55 789999999999999999 89999999863 3
Q ss_pred CCeeeeecHHHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~ 180 (412)
++++||||..||++.+..
T Consensus 147 g~lvGiit~~Dil~~l~~ 164 (172)
T 3lhh_A 147 GDLKGLVTLQDMMDALTG 164 (172)
T ss_dssp SCEEEEEEHHHHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHhC
Confidence 679999999999998864
No 62
>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=99.65 E-value=1.2e-15 Score=129.96 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=108.0
Q ss_pred CcccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178 1 MAVRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV 80 (412)
Q Consensus 1 ~~~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv 80 (412)
|-.+|.+.+++++|. ++++++++ ++|+.+|++.|.++++.++||+|+ +++++|+|
T Consensus 1 ~~~~l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Giv 55 (138)
T 2p9m_A 1 MIDTLKNIKVKDVMT--KNVITAKR-HEGVVEAFEKMLKYKISSLPVIDD----------------------ENKVIGIV 55 (138)
T ss_dssp ----CTTCBGGGTSB--CSCCCEET-TSBHHHHHHHHHHHTCCEEEEECT----------------------TCBEEEEE
T ss_pred CccccccCCHHHhhc--CCceEECC-CCcHHHHHHHHHHCCCcEEEEECC----------------------CCeEEEEE
Confidence 456889999999995 57899999 999999999999999999999995 36899999
Q ss_pred ehHHH-HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cC-----CceeeecCCCCCCCCCC
Q 015178 81 CMVDI-ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GG-----VQNLVIPLPAGTKLQPK 153 (412)
Q Consensus 81 t~~Di-l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~g-----v~Rl~V~~~~~~~~~~~ 153 (412)
+..|+ +.++.+.. ....+++++|... +.++++++++.+|++.|. ++ ++++||+++
T Consensus 56 t~~dl~~~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~-------- 117 (138)
T 2p9m_A 56 TTTDIGYNLIRDKY-------TLETTIGDVMTKD---VITIHEDASILEAIKKMDISGKKEEIINQLPVVDK-------- 117 (138)
T ss_dssp EHHHHHHHHTTTCC-------CSSCBHHHHSCSS---CCCEETTSBHHHHHHHHTCC-----CCCEEEEECT--------
T ss_pred EHHHHHHHHHhhcc-------cCCcCHHHHhCCC---cEEECCCCCHHHHHHHHHhcCCccccccEEEEECC--------
Confidence 99999 88776421 2357899999755 889999999999999999 88 999999863
Q ss_pred CCCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 154 PSLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 154 ~~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+++.+|+||..|+++++.+
T Consensus 118 --------~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 118 --------NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp --------TSBEEEEEEHHHHHHHHHH
T ss_pred --------CCeEEEEEEHHHHHHHHHh
Confidence 3678999999999998865
No 63
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=99.64 E-value=6.2e-16 Score=135.11 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=108.1
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEe-ecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVW-SCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
|...+|+++|....+++++++ ++|+.+|++.|.+++++++||+ +.+ .++++|+|+..
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVv~d~~---------------------~~~lvGivt~~ 74 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDV-DETIADALLLYLEEQYSRFPVTADND---------------------KDKIIGYAYNY 74 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEET-TSBHHHHHHHHHHHCCSEEEEEETTE---------------------EEEEEEEEEHH
T ss_pred cCCCEeeeEecchhheEEEcC-CCCHHHHHHHHHhCCCCEEEEEECCC---------------------CCcEEEEEEHH
Confidence 557889999964347999999 9999999999999999999999 532 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+.++.... ..+|+++| .. ++++.+++++.+|++.|. ++++++||+++ +
T Consensus 75 dl~~~~~~~~---------~~~v~~~m-~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----------------~ 125 (153)
T 3oco_A 75 DIVRQARIDD---------KAKISTIM-RD---IVSVPENMKVPDVMEEMSAHRVPMAIVIDE----------------Y 125 (153)
T ss_dssp HHHHHHHHHT---------TSBGGGTC-BC---CEEEETTSBHHHHHHHHHHTTCSCEEEECT----------------T
T ss_pred HHHhHHhcCC---------CCcHHHHh-CC---CeEECCCCCHHHHHHHHHHcCCcEEEEEeC----------------C
Confidence 9999876521 46799999 55 799999999999999999 89999999863 3
Q ss_pred CCeeeeecHHHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~ 180 (412)
|+++|+||..||++.+..
T Consensus 126 g~~vGivt~~dil~~l~~ 143 (153)
T 3oco_A 126 GGTSGIITDKDVYEELFG 143 (153)
T ss_dssp SCEEEEECHHHHHHHHHC
T ss_pred CCEEEEeeHHHHHHHHhc
Confidence 679999999999998864
No 64
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.64 E-value=5.6e-16 Score=138.63 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCcccccCCCCCc---EEEE--eCCCcHHHHHHHHHhcCCCCceeEEE--cCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178 191 QPINSLNIVDDAG---IFAI--QYDEPAAFAIPLIAQSHINQTSVALV--DEEGRLVGDISPFSFNSCDETVAAAMVTLS 263 (412)
Q Consensus 191 ~~i~~L~i~~~~~---v~tv--~~~~~~~~a~~~m~~~~i~~s~vpVV--d~~g~lvG~IS~~dl~~~~~~~~~~~~~ls 263 (412)
.++++ +|++.. ++++ .+++++.+|+++|.++++ +++||+ |++|+++|+ +|
T Consensus 11 ~~v~d--im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~--~~~pVv~~d~~~~lvGi-------------------it 67 (185)
T 2j9l_A 11 TLAMD--VMKPRRNDPLLTVLTQDSMTVEDVETIISETTY--SGFPVVVSRESQRLVGF-------------------VL 67 (185)
T ss_dssp CBHHH--HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCC--SEEEEESCTTTCBEEEE-------------------EE
T ss_pred CcHHH--HhcccccCceEEEecCCCccHHHHHHHHHhcCC--CceeEEEECCCCeEEEE-------------------EE
Confidence 44554 566531 6778 999999999999999999 999999 788999999 55
Q ss_pred HhhhhhhhcCCCCCchhHHHHHHHhhhhhh-hHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC
Q 015178 264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSM-VGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS 342 (412)
Q Consensus 264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~ 342 (412)
..|++.+...+ .....++ ......+.. . . .+ .........++.++|.+
T Consensus 68 ~~dl~~~~~~~------------~~~~~~~~~~~~~~~~~--------~-----~-~~-----~~~~~~~~~~v~~im~~ 116 (185)
T 2j9l_A 68 RRDLIISIENA------------RKKQDGVVSTSIIYFTE--------H-----S-PP-----LPPYTPPTLKLRNILDL 116 (185)
T ss_dssp HHHHHHHHHHH------------HTSCSCCCTTCEEECSS--------S-----C-CC-----CCTTCCCCEECGGGEES
T ss_pred HHHHHHHHHhh------------cccCCCccccceeeccc--------C-----C-cc-----cccccccCccHHHhhCc
Confidence 66666532100 0000000 000000000 0 0 00 00011123456788999
Q ss_pred CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHHhh
Q 015178 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRLRS 396 (412)
Q Consensus 343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~~~ 396 (412)
++++|++++++.+++++|.+++++++||+| +|+++||||+.||++++.+....
T Consensus 117 ~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 117 SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHCC-
T ss_pred CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999 78999999999999999876543
No 65
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=99.64 E-value=1.5e-15 Score=142.89 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=127.7
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
..+|+|+|. ++++++++ ++++.+|++.|.+++++++||+|. +++++||+|..||+
T Consensus 6 ~~~v~~im~--~~~~~v~~-~~~~~~a~~~m~~~~~~~lpVvd~----------------------~~~l~Giit~~di~ 60 (245)
T 3l2b_A 6 KLKVEDLEM--DKIAPLAP-EVSLKMAWNIMRDKNLKSIPVADG----------------------NNHLLGMLSTSNIT 60 (245)
T ss_dssp CCBGGGSCC--BCCCCBCT-TCBHHHHHHHHHHTTCSEEEEECT----------------------TCBEEEEEEHHHHH
T ss_pred cCcHHHhcC--CCCcEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCEEEEEEEHHHHH
Confidence 568999995 56899999 999999999999999999999995 36899999999999
Q ss_pred HHhhhcccCCCcccccC--------------------------------CchhhhccCC-CCceEecCCCCcHHHHHHHH
Q 015178 87 SFLCKEENLLNPESALQ--------------------------------DPVSVLLPEA-SGVIRHLEPSASLLEAVDLL 133 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~--------------------------------~~V~dvm~~~-~~~~~tV~~~~sL~~ai~lm 133 (412)
+++...... +...... .+...++..- .+.++.+ +. -.++.+.+
T Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIv--gd-r~~~~~~~ 136 (245)
T 3l2b_A 61 ATYMDIWDS-NILAKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIA--GD-RAEIQAEL 136 (245)
T ss_dssp HHHHCCCCT-THHHHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEE--CS-CHHHHHHH
T ss_pred HHHHHhhhh-hhhhhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEE--CC-CHHHHHHH
Confidence 987532100 0000000 0111111111 2333333 11 25666666
Q ss_pred h-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCC-CCcEEEEeCCC
Q 015178 134 L-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVD-DAGIFAIQYDE 211 (412)
Q Consensus 134 ~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~-~~~v~tv~~~~ 211 (412)
. +|+.-+++........ .......+.....+.|..|......... ...++++ +|+ ++ ++++++++
T Consensus 137 i~~~~~~liit~~~~~~~----~v~~~a~~~~~~~i~t~~d~~~~~~~~~------~~~~v~~--im~~~~-~~~~~~~~ 203 (245)
T 3l2b_A 137 IELKVSLLIVTGGHTPSK----EIIELAKKNNITVITTPHDSFTASRLIV------QSLPVDY--VMTKDN-LVAVSTDD 203 (245)
T ss_dssp HHTTCSEEEECTTCCCCH----HHHHHHHHHTCEEEECSSCHHHHHHHGG------GGSBHHH--HSBCTT-CCCEETTS
T ss_pred HHcCCCEEEECCCCCCCH----HHHHHHHHcCCeEEEeCCChHHHHHHHh------cCCceee--EecCCc-cEEECCCC
Confidence 6 8888776653211100 0000001122233666666555432211 1234555 688 77 99999999
Q ss_pred cHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 212 PAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 212 ~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
++.+|+++|.++++ +.+||||++|+++|+||..||.+
T Consensus 204 ~~~~~~~~m~~~~~--~~~pVvd~~~~~~Giit~~dll~ 240 (245)
T 3l2b_A 204 LVEDVKVTMSETRY--SNYPVIDENNKVVGSIARFHLIS 240 (245)
T ss_dssp BHHHHHHHHHHHCC--SEEEEECTTCBEEEEEECC----
T ss_pred cHHHHHHHHHhcCC--ceEEEEcCCCeEEEEEEHHHhhc
Confidence 99999999999999 99999999999999977666654
No 66
>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}
Probab=99.64 E-value=5.2e-16 Score=131.21 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=103.6
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
..+|+|+|....+++++++ ++|+.+|++.|.+++++++||+|.+ .++++|+|+..||+
T Consensus 2 ~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~vGivt~~dl~ 59 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKR-NQTLDECLDVIIESAHSRFPVISED---------------------KDHIEGILMAKDLL 59 (127)
T ss_dssp -CBHHHHSEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGGGGG
T ss_pred CcCHHHhcccHHHeEEEcC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence 5689999964445999999 9999999999999999999999953 25899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
+.+.... ...+++++|.. +.++.+++++.+|++.|. ++++++||+++ ++++
T Consensus 60 ~~~~~~~--------~~~~v~~~m~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~~ 111 (127)
T 3nqr_A 60 PFMRSDA--------EAFSMDKVLRT----AVVVPESKRVDRMLKEFRSQRYHMAIVIDE----------------FGGV 111 (127)
T ss_dssp GGGSTTC--------CCCCHHHHCBC----CCEEETTCBHHHHHHHHHHTTCCEEEEECT----------------TSCE
T ss_pred HHHhccC--------CCCCHHHHcCC----CeEECCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCCE
Confidence 8775321 24679999942 578999999999999999 89999999863 3679
Q ss_pred eeeecHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFL 179 (412)
Q Consensus 166 v~iITq~DIv~~l~ 179 (412)
+|+||..||++.+.
T Consensus 112 ~Giit~~dll~~l~ 125 (127)
T 3nqr_A 112 SGLVTIEDILELIV 125 (127)
T ss_dssp EEEEEHHHHHHHC-
T ss_pred EEEEEHHHHHHHHh
Confidence 99999999999864
No 67
>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}
Probab=99.63 E-value=8.7e-16 Score=135.85 Aligned_cols=129 Identities=12% Similarity=0.171 Sum_probs=111.2
Q ss_pred cccccchhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 4 RLLSVGVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 4 ~~~~~~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
.|..++|+|+|..+ ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+.
T Consensus 20 ~l~~~~v~dim~~~~~~~~~v~~-~~~l~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~ 76 (165)
T 3fhm_A 20 QGMATFVKDLLDRKGRDVVTVGP-DVSIGEAAGTLHAHKIGAVVVTDA----------------------DGVVLGIFTE 76 (165)
T ss_dssp SSSSCBHHHHHHHHCSCCCEECT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEH
T ss_pred hhhhcCHHHHhccCCCCCeEECC-CCCHHHHHHHHHHcCCCEEEEEcC----------------------CCeEEEEEEH
Confidence 57789999999743 46999999 999999999999999999999995 3689999999
Q ss_pred HHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccC
Q 015178 83 VDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFH 161 (412)
Q Consensus 83 ~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~ 161 (412)
.||++.+.... ......+|+++|... ++++++++++.+|++.|. ++++++||+++
T Consensus 77 ~dl~~~~~~~~-----~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---------------- 132 (165)
T 3fhm_A 77 RDLVKAVAGQG-----AASLQQSVSVAMTKN---VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN---------------- 132 (165)
T ss_dssp HHHHHHHHHHG-----GGGGTSBGGGTSBSS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET----------------
T ss_pred HHHHHHHHhcC-----CccccCCHHHHhcCC---CeEECCCCcHHHHHHHHHHcCCCEEEEEEC----------------
Confidence 99999887532 123357899999855 889999999999999999 89999999853
Q ss_pred CCCeeeeecHHHHHHHHHH
Q 015178 162 NDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 162 ~~~~v~iITq~DIv~~l~~ 180 (412)
++++|+||..||++++.+
T Consensus 133 -g~~~Giit~~dil~~~~~ 150 (165)
T 3fhm_A 133 -GRLAGIISIGDVVKARIG 150 (165)
T ss_dssp -TEEEEEEEHHHHHHHTTC
T ss_pred -CEEEEEEEHHHHHHHHHH
Confidence 578999999999999764
No 68
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=99.63 E-value=1.3e-15 Score=129.22 Aligned_cols=123 Identities=13% Similarity=0.159 Sum_probs=105.0
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
.+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+ .++++|+|+..||
T Consensus 3 ~~~~v~diM~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~~---------------------~~~~~Givt~~dl 60 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDI-SQPLPQLLATIIETAHSRFPVYEDD---------------------RDNIIGILLAKDL 60 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEET-TSCHHHHHHHHHHSCCSEEEEESSS---------------------TTCEEEEEEGGGG
T ss_pred CCCCHHHhCccHHHeEEECC-CCCHHHHHHHHHHcCCCEEEEEcCC---------------------CCcEEEEEEHHHH
Confidence 46789999975567999999 9999999999999999999999852 2689999999999
Q ss_pred HHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCC
Q 015178 86 ISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDS 164 (412)
Q Consensus 86 l~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~ 164 (412)
+.++.. ...+++++|.. ++++.+++++.+|++.|. ++++++||+++ +++
T Consensus 61 ~~~~~~----------~~~~v~~~m~~----~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~----------------~g~ 110 (129)
T 3jtf_A 61 LRYMLE----------PALDIRSLVRP----AVFIPEVKRLNVLLREFRASRNHLAIVIDE----------------HGG 110 (129)
T ss_dssp GGGGTC----------TTSCGGGGCBC----CCEEETTCBHHHHHHHHHTSSCCEEEEECC-----------------CC
T ss_pred HhHhcc----------CCcCHHHHhCC----CeEeCCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCC
Confidence 987642 14679999852 679999999999999999 89999999863 367
Q ss_pred eeeeecHHHHHHHHHH
Q 015178 165 EYCWLTQEDLIRYFLN 180 (412)
Q Consensus 165 ~v~iITq~DIv~~l~~ 180 (412)
++|+||..||++.+..
T Consensus 111 ~~Giit~~Dil~~l~g 126 (129)
T 3jtf_A 111 ISGLVTMEDVLEQIVG 126 (129)
T ss_dssp EEEEEEHHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHhC
Confidence 8999999999998864
No 69
>3ctu_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.81A {Streptococcus pneumoniae TIGR4} PDB: 3k6e_A
Probab=99.63 E-value=1.1e-15 Score=133.53 Aligned_cols=135 Identities=11% Similarity=0.116 Sum_probs=111.5
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|...+++|+|..+++++++++ ++|+.+|++.|.++++.++||+|. +++++|+||..
T Consensus 11 ~l~~~~v~dim~p~~~~~~v~~-~~~l~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Giit~~ 67 (156)
T 3ctu_A 11 TFLLGQEETFLTPAKNLAVLID-THNADHATLLLSQMTYTRVPVVTD----------------------EKQFVGTIGLR 67 (156)
T ss_dssp HHHHTTGGGGEEEGGGCCCEET-TSBHHHHHHHHTTCSSSEEEEECC-----------------------CBEEEEEEHH
T ss_pred HHHHHHHHHHcCcccCceEECC-CCCHHHHHHHHHHCCCceEeEECC----------------------CCEEEEEEcHH
Confidence 4556789999986678999999 999999999999999999999995 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+.++..... ........+|+++|... ++++.+++++.+|++.|. ++ ++||+++ +
T Consensus 68 dl~~~~~~~~~--~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~--~lpVvd~----------------~ 124 (156)
T 3ctu_A 68 DIMAYQMEHDL--SQEIMADTDIVHMTKTD---VAVVSPDFTITEVLHKLVDES--FLPVVDA----------------E 124 (156)
T ss_dssp HHHHHHHHHTC--CHHHHTTSBGGGGCBCS---CCCBCSSCCHHHHHHHTTTSS--EEEEECT----------------T
T ss_pred HHHHHHHhccc--cccccccCcHHHhccCC---ceeeCCCCcHHHHHHHHHHcC--eEEEEcC----------------C
Confidence 99998875211 11123367899999755 889999999999999999 54 7999853 3
Q ss_pred CCeeeeecHHHHHHHHHHccCc
Q 015178 163 DSEYCWLTQEDLIRYFLNCIGL 184 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~~~ 184 (412)
++++|+||..||++++.+....
T Consensus 125 g~~~Giit~~dil~~l~~~~~~ 146 (156)
T 3ctu_A 125 GIFQGIITRKSILKAVNALLHD 146 (156)
T ss_dssp SBEEEEEETTHHHHHHHHHSCC
T ss_pred CeEEEEEEHHHHHHHHHHHHHh
Confidence 6789999999999999875443
No 70
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=99.63 E-value=1.6e-15 Score=126.45 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=104.0
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
++|+++|. ++++++++ ++|+.+|++.|.++++.++||+|+ +++++|+|+..||+.
T Consensus 1 ~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~G~vt~~dl~~ 55 (122)
T 3kpb_A 1 TLVKDILS--KPPITAHS-NISIMEAAKILIKHNINHLPIVDE----------------------HGKLVGIITSWDIAK 55 (122)
T ss_dssp CBHHHHCC--SCCCCEET-TSBHHHHHHHHHHHTCSCEEEECT----------------------TSBEEEEECHHHHHH
T ss_pred CchHHhhC--CCCEEeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCCEEEEEEHHHHHH
Confidence 57899995 57899999 999999999999999999999995 368999999999999
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
++... ..+++++|... +.++++++++.+|++.|. ++++++||+++ +++.+
T Consensus 56 ~~~~~----------~~~v~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~----------------~g~~~ 106 (122)
T 3kpb_A 56 ALAQN----------KKTIEEIMTRN---VITAHEDEPVDHVAIKMSKYNISGVPVVDD----------------YRRVV 106 (122)
T ss_dssp HHHTT----------CCBGGGTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECT----------------TCBEE
T ss_pred HHHhc----------ccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCeEEEECC----------------CCCEE
Confidence 87652 23799999755 889999999999999999 89999999863 36789
Q ss_pred eeecHHHHHHHHHH
Q 015178 167 CWLTQEDLIRYFLN 180 (412)
Q Consensus 167 ~iITq~DIv~~l~~ 180 (412)
|+||..||++++.+
T Consensus 107 Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 107 GIVTSEDISRLFGG 120 (122)
T ss_dssp EEEEHHHHHHHHC-
T ss_pred EEEeHHHHHHHhhc
Confidence 99999999999754
No 71
>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.63 E-value=1.4e-15 Score=140.93 Aligned_cols=161 Identities=11% Similarity=0.067 Sum_probs=102.5
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
.+++++|. ++++++++ ++|+.+|+++|.++++.++||+|. +++++|+|+..|+..
T Consensus 13 ~~~~~~~~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~----------------------~~~l~Givt~~dl~~ 67 (213)
T 1vr9_A 13 MKVKKWVT--QDFPMVEE-SATVRECLHRMRQYQTNECIVKDR----------------------EGHFRGVVNKEDLLD 67 (213)
T ss_dssp CBGGGGCB--SCSCEEET-TCBHHHHHHHHHHTTSSEEEEECT----------------------TSBEEEEEEGGGGTT
T ss_pred cCHHHhhc--CCCeEECC-CCcHHHHHHHHHHCCCCEEEEEcC----------------------CCEEEEEEEHHHHHh
Confidence 35788884 67899999 999999999999999999999995 368999999999876
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
.+. ..+|+++|... ++++.+++++.+|+++|. ++++++||+++ +++++
T Consensus 68 ~~~------------~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~lv 116 (213)
T 1vr9_A 68 LDL------------DSSVFNKVSLP---DFFVHEEDNITHALLLFLEHQEPYLPVVDE----------------EMRLK 116 (213)
T ss_dssp SCT------------TSBSGGGCBCT---TCCEETTSBHHHHHHHHHHCCCSEEEEECT----------------TCBEE
T ss_pred hcC------------CCcHHHHccCC---CEEECCCCcHHHHHHHHHHhCCCEEEEEcC----------------CCEEE
Confidence 532 36799999855 889999999999999999 89999999863 26789
Q ss_pred eeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC
Q 015178 167 CWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG 237 (412)
Q Consensus 167 ~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g 237 (412)
|+||..|+++.+..... ... .+.+-.+.+.....++.+|.+.|.++++ +.++|++.+|
T Consensus 117 Giit~~Dil~~~~~~~~-~~~----------~~~~l~~~~~~~~~~l~~~~~~l~~~~~--~~l~V~~~~~ 174 (213)
T 1vr9_A 117 GAVSLHDFLEALIEALA-MDV----------PGIRFSVLLEDKPGELRKVVDALALSNI--NILSVITTRS 174 (213)
T ss_dssp EEEEHHHHHHHHHHSCC------------------------------------------------------
T ss_pred EEEEHHHHHHHHHHHhc-CCC----------CcEEEEEEeCCCCccHHHHHHHHHHCCC--cEEEEEEEec
Confidence 99999999998865221 010 1111101122334569999999999999 9999987654
No 72
>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}
Probab=99.62 E-value=8e-16 Score=131.90 Aligned_cols=125 Identities=16% Similarity=0.151 Sum_probs=104.8
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
+.+|+|+|...++++++++ ++|+.+|++.|.+++++++||++.+ .++++|+|+..||+
T Consensus 2 ~~~v~~iM~~~~~~~~v~~-~~~v~~a~~~m~~~~~~~~pVvd~~---------------------~~~~vGivt~~dl~ 59 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKA-TQTPREFLPAVIDAAHSRYPVIGES---------------------HDDVLGVLLAKDLL 59 (136)
T ss_dssp -CBHHHHSEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGGGGG
T ss_pred CCChHhccccHHHEEEEcC-CCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCcEEEEEEHHHHH
Confidence 5689999975567999999 9999999999999999999999953 25899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
+++.+. .....+++++|. +++++.+++++.+|++.|. ++++++||+++ ++++
T Consensus 60 ~~~~~~-------~~~~~~v~~~m~----~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~----------------~g~l 112 (136)
T 3lfr_A 60 PLILKA-------DGDSDDVKKLLR----PATFVPESKRLNVLLREFRANHNHMAIVIDE----------------YGGV 112 (136)
T ss_dssp GGGGSS-------SGGGCCGGGTCB----CCCEEETTCBHHHHHHHHHHHTCCEEEEECT----------------TSCE
T ss_pred HHHHhc-------cCCCcCHHHHcC----CCeEECCCCcHHHHHHHHHhcCCeEEEEEeC----------------CCCE
Confidence 887631 122467999995 2689999999999999999 89999999863 3679
Q ss_pred eeeecHHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFLN 180 (412)
Q Consensus 166 v~iITq~DIv~~l~~ 180 (412)
+|+||..||++.+..
T Consensus 113 vGiit~~Dil~~l~~ 127 (136)
T 3lfr_A 113 AGLVTIEDVLEQIVG 127 (136)
T ss_dssp EEEEEHHHHHTTC--
T ss_pred EEEEEHHHHHHHHhC
Confidence 999999999987653
No 73
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=99.61 E-value=3.5e-15 Score=126.95 Aligned_cols=128 Identities=13% Similarity=0.109 Sum_probs=105.1
Q ss_pred ccccc-chhccccCC-CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 4 RLLSV-GVSDLCIGK-PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 4 ~~~~~-~v~dl~~~~-~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
|...+ +++|+|..+ ++++++++ ++|+.+|++.|.++++.++||+| + ++++|+|+
T Consensus 1 ~~~~m~~v~~im~~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~Givt 56 (135)
T 2rc3_A 1 FQGHMKTVKHLLQEKGHTVVAIGP-DDSVFNAMQKMAADNIGALLVMK-D----------------------EKLVGILT 56 (135)
T ss_dssp ----CCBHHHHHHHHCCCCCEECT-TSBHHHHHHHHHHHTCSEEEEEE-T----------------------TEEEEEEE
T ss_pred CCccceeHHHHHhcCCCCcEEECC-CCcHHHHHHHHHhcCCCEEEEEE-C----------------------CEEEEEEe
Confidence 34456 899999522 57899999 99999999999999999999998 3 58999999
Q ss_pred hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
..||++++...+. .....+++++|... +.++++++++.+|++.|. ++++++||+++
T Consensus 57 ~~dl~~~~~~~~~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--------------- 113 (135)
T 2rc3_A 57 ERDFSRKSYLLDK-----PVKDTQVKEIMTRQ---VAYVDLNNTNEDCMALITEMRVRHLPVLDD--------------- 113 (135)
T ss_dssp HHHHHHHGGGSSS-----CGGGSBGGGTSBCS---CCCBCTTCBHHHHHHHHHHHTCSEEEEEET---------------
T ss_pred hHHHHHHHHHcCC-----CcccCCHHHhccCC---CeEECCCCcHHHHHHHHHHhCCCEEEEEeC---------------
Confidence 9999976553211 12357899999755 889999999999999999 89999999852
Q ss_pred CCCCeeeeecHHHHHHHHHH
Q 015178 161 HNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~~ 180 (412)
++.+|+||..||++++.+
T Consensus 114 --g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 114 --GKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp --TEEEEEEEHHHHHHHHHC
T ss_pred --CEEEEEEEHHHHHHHHHh
Confidence 468999999999998864
No 74
>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A
Probab=99.61 E-value=7.5e-15 Score=126.00 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=104.6
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCC--eEEEEEehHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAAC--RCIGKVCMVD 84 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~vGivt~~D 84 (412)
+++++|+|. ++++++++ ++|+.+|++.|.++++.++||+|. ++ +++|+|+..|
T Consensus 4 ~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~~~Givt~~d 58 (141)
T 2rih_A 4 AIRTSELLK--RPPVSLPE-TATIREVATELAKNRVGLAVLTAR----------------------DNPKRPVAVVSERD 58 (141)
T ss_dssp -CBGGGGCC--SCCEEEET-TCBHHHHHHHHHHHTCSEEEEEET----------------------TEEEEEEEEEEHHH
T ss_pred ceEHHHHhc--CCCeEeCC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcceeEEEEEHHH
Confidence 468999995 57999999 999999999999999999999995 24 8999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
|+.++.+.. ....+++++|... +.+++++ ++.+|++.|. ++++++||+++ ++
T Consensus 59 l~~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~----------------~g 111 (141)
T 2rih_A 59 ILRAVAQRL-------DLDGPAMPIANSP---ITVLDTD-PVHVAAEKMRRHNIRHVVVVNK----------------NG 111 (141)
T ss_dssp HHHHHHTTC-------CTTSBSGGGCBCC---CEEETTS-BHHHHHHHHHHHTCSEEEEECT----------------TS
T ss_pred HHHHHhcCC-------CCCCCHHHHcCCC---CeEEcCC-CHHHHHHHHHHcCCeEEEEEcC----------------CC
Confidence 999876521 1257899999755 8999999 9999999999 89999999863 36
Q ss_pred CeeeeecHHHHHHHHHH
Q 015178 164 SEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~ 180 (412)
+++|+||..||++.+..
T Consensus 112 ~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 112 ELVGVLSIRDLCFERAI 128 (141)
T ss_dssp CEEEEEEHHHHHSCHHH
T ss_pred cEEEEEEHHHHHHHHHH
Confidence 78999999999886654
No 75
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=99.61 E-value=2.1e-15 Score=127.55 Aligned_cols=122 Identities=14% Similarity=0.157 Sum_probs=105.3
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
+.+|+++|. ++++++++ ++|+.+|++.|.++++.++||+|. ++++|+|+..||+
T Consensus 4 s~~v~~~m~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~-----------------------~~~~Givt~~dl~ 57 (128)
T 3gby_A 4 SVTFSYLAE--TDYPVFTL-GGSTADAARRLAASGCACAPVLDG-----------------------ERYLGMVHLSRLL 57 (128)
T ss_dssp TCBGGGGCB--CCSCCEET-TSBHHHHHHHHHHHTCSEEEEEET-----------------------TEEEEEEEHHHHH
T ss_pred ceEHHHhhc--CCcceECC-CCCHHHHHHHHHHCCCcEEEEEEC-----------------------CEEEEEEEHHHHH
Confidence 678999995 56899999 999999999999999999999994 5899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
+.+.+.. ....+++++|... +.++.+++++.+|++.|. ++++++||+++ +++.
T Consensus 58 ~~~~~~~-------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~----------------~g~~ 111 (128)
T 3gby_A 58 EGRKGWP-------TVKEKLGEELLET---VRSYRPGEQLFDNLISVAAAKCSVVPLADE----------------DGRY 111 (128)
T ss_dssp TTCSSSC-------CTTCBCCGGGCBC---CCCBCTTSBGGGSHHHHHHCSSSEEEEECT----------------TCBE
T ss_pred HHHhhCC-------cccCcHHHHccCC---CcEECCCCCHHHHHHHHHhCCCcEEEEECC----------------CCCE
Confidence 8765321 1136799999855 889999999999999999 89999999863 3678
Q ss_pred eeeecHHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFLN 180 (412)
Q Consensus 166 v~iITq~DIv~~l~~ 180 (412)
+|+||+.|+++++.+
T Consensus 112 ~Giit~~dll~~l~~ 126 (128)
T 3gby_A 112 EGVVSRKRILGFLAE 126 (128)
T ss_dssp EEEEEHHHHHHHHHT
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999999864
No 76
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.61 E-value=6.1e-15 Score=140.67 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=50.1
Q ss_pred cccCCceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 339 VHRSEAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 339 ~m~~~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+|...++|+.++++|.+|+.+|...|++|+||++. |+||||||+.||++++..
T Consensus 194 ~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~-GrLVGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 194 RIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEG 246 (250)
T ss_dssp CEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHC
T ss_pred cccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 58899999999999999999999999999999985 899999999999999874
No 77
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=99.61 E-value=1.6e-15 Score=130.84 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=106.6
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
+..+|+|+|....+++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..||
T Consensus 3 ~~~~v~~im~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~G~vt~~dl 59 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKP-TTTVDEALELLVENRITGFPVIDE----------------------DWKLVGLVSDYDL 59 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCT-TSBHHHHHHHHHHTTCSEEEEECT----------------------TCBEEEEEEHHHH
T ss_pred ceEEhhhccCCCCCCeEECC-CCcHHHHHHHHHHcCCceEEEEeC----------------------CCeEEEEEEHHHH
Confidence 35789999975447999999 999999999999999999999995 3689999999999
Q ss_pred HHHhhhcccC-------CCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCC
Q 015178 86 ISFLCKEENL-------LNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLK 157 (412)
Q Consensus 86 l~~l~~~~~l-------~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~ 157 (412)
+.++...... .........+++++|... ++++.++++|.+|++.|. ++++++||+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~------------ 124 (152)
T 4gqw_A 60 LALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTPA---PLVVEEKTNLEDAAKILLETKYRRLPVVDS------------ 124 (152)
T ss_dssp TTCC----CCHHHHHHHTC-----CCBHHHHSEES---CCCEESSSBHHHHHHHHHHSSCCEEEEECT------------
T ss_pred HHhhcccCcccchHHHHHHHHHhccccHHHhcCCC---ceEECCCCcHHHHHHHHHHCCCCEEEEECC------------
Confidence 8754421100 000122357899999855 789999999999999999 89999999863
Q ss_pred cccCCCCeeeeecHHHHHHHHHH
Q 015178 158 STFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 158 ~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+++++|+||..||++++.+
T Consensus 125 ----~g~~~Giit~~dil~~~~~ 143 (152)
T 4gqw_A 125 ----DGKLVGIITRGNVVRAALQ 143 (152)
T ss_dssp ----TSBEEEEEEHHHHHHHHHC
T ss_pred ----CCcEEEEEEHHHHHHHHHh
Confidence 3678999999999999875
No 78
>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1
Probab=99.60 E-value=5.9e-15 Score=125.86 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=106.7
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|...+++++|. ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..
T Consensus 3 ~l~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~~ 57 (138)
T 2yzi_A 3 MDMKAPIKVYMT--KKLLGVKP-STSVQEASRLMMEFDVGSLVVIND----------------------DGNVVGFFTKS 57 (138)
T ss_dssp CCTTSBGGGTCB--CCCCEECT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TSCEEEEEEHH
T ss_pred chhhhhHHHHhc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHH
Confidence 466889999995 57899999 999999999999999999999995 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||++.+...+. ....+++++|... +.++++++++.+|++.|. ++++++ |+++ +
T Consensus 58 dl~~~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~----------------~ 111 (138)
T 2yzi_A 58 DIIRRVIVPGL------PYDIPVERIMTRN---LITANVNTPLGEVLRKMAEHRIKHI-LIEE----------------E 111 (138)
T ss_dssp HHHHHTTTTCC------CTTSBGGGTCBCS---CCEEETTSBHHHHHHHHHHHTCSEE-EEEE----------------T
T ss_pred HHHHHHHhcCC------cccCCHHHHhhCC---CeEECCCCcHHHHHHHHHhcCCCEE-EECC----------------C
Confidence 99854432111 2357899999755 889999999999999999 899999 8752 3
Q ss_pred CCeeeeecHHHHHHHHHH
Q 015178 163 DSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~ 180 (412)
++++|+||+.||++++.+
T Consensus 112 g~~~Giit~~dil~~~~~ 129 (138)
T 2yzi_A 112 GKIVGIFTLSDLLEASRR 129 (138)
T ss_dssp TEEEEEEEHHHHHHHHHC
T ss_pred CCEEEEEEHHHHHHHHHH
Confidence 678999999999999875
No 79
>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}
Probab=99.60 E-value=4.7e-15 Score=129.61 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=107.5
Q ss_pred cchhccccCC----CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 8 VGVSDLCIGK----PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 8 ~~v~dl~~~~----~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
++|+|+|..+ ++++++++ ++|+.+|++.|.++++.++||.+ +++++|+|+..
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~V~~-----------------------~~~~~Givt~~ 62 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTK-NDFVYDAIKLMAEKGIGALLVVD-----------------------GDDIAGIVTER 62 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEET-TSBHHHHHHHHHHHTCSEEEEES-----------------------SSSEEEEEEHH
T ss_pred HHHHHHHhcccccCCCCeEECC-CCcHHHHHHHHHHcCCCEEEEee-----------------------CCEEEEEEEHH
Confidence 4699999765 67899999 99999999999999999999955 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||++++..... .....+++++|... +.++++++++.+|++.|. ++++++||+++
T Consensus 63 dl~~~~~~~~~-----~~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~----------------- 117 (157)
T 4fry_A 63 DYARKVVLQER-----SSKATRVEEIMTAK---VRYVEPSQSTDECMALMTEHRMRHLPVLDG----------------- 117 (157)
T ss_dssp HHHHHSGGGTC-----CSSSCBHHHHSBSS---CCCBCTTSBHHHHHHHHHHHTCSEEEEEET-----------------
T ss_pred HHHHHHHhccC-----CccccCHHHHcCCC---CcEECCCCcHHHHHHHHHHcCCCEEEEEEC-----------------
Confidence 99998875321 12357899999865 889999999999999999 89999999852
Q ss_pred CCeeeeecHHHHHHHHHHc
Q 015178 163 DSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~ 181 (412)
++++|+||+.||++++.+.
T Consensus 118 g~~~Giit~~dil~~l~~~ 136 (157)
T 4fry_A 118 GKLIGLISIGDLVKSVIAD 136 (157)
T ss_dssp TEEEEEEEHHHHHHHHHTT
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 5689999999999999764
No 80
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=99.60 E-value=5.7e-15 Score=123.46 Aligned_cols=121 Identities=15% Similarity=0.253 Sum_probs=103.6
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
++++|+|. ++++++++ ++|+.+|++.|.++++.++||+| + ++++|+++..|++.
T Consensus 1 m~v~~~m~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd-~----------------------~~~~G~it~~dl~~ 54 (125)
T 1pbj_A 1 MRVEDVMV--TDVDTIDI-TASLEDVLRNYVENAKGSSVVVK-E----------------------GVRVGIVTTWDVLE 54 (125)
T ss_dssp -CHHHHCB--CSCCEEET-TCBHHHHHHHHHHHCCCEEEEEE-T----------------------TEEEEEEEHHHHHH
T ss_pred CCHHHhcC--CCceEECC-CCcHHHHHHHHHHcCCCEEEEEe-C----------------------CeeEEEEeHHHHHH
Confidence 57899995 57899999 99999999999999999999999 3 58999999999998
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
++.+... ....+++++|... +.++++++++.+|++.|. ++++++||+++ ++.+
T Consensus 55 ~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-----------------~~~~ 108 (125)
T 1pbj_A 55 AIAEGDD------LAEVKVWEVMERD---LVTISPRATIKEAAEKMVKNVVWRLLVEED-----------------DEII 108 (125)
T ss_dssp HHHHTCC------TTTSBHHHHCBCG---GGEECTTSCHHHHHHHHHHHTCSEEEEEET-----------------TEEE
T ss_pred HHhcCCc------ccccCHHHHcCCC---CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-----------------CEEE
Confidence 8765321 1257899999754 889999999999999999 89999999852 5688
Q ss_pred eeecHHHHHHHHHH
Q 015178 167 CWLTQEDLIRYFLN 180 (412)
Q Consensus 167 ~iITq~DIv~~l~~ 180 (412)
|+||..|+++++.+
T Consensus 109 Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 109 GVISATDILRAKMA 122 (125)
T ss_dssp EEEEHHHHHHHHC-
T ss_pred EEEEHHHHHHHHHh
Confidence 99999999998753
No 81
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.60 E-value=2.9e-15 Score=145.23 Aligned_cols=122 Identities=24% Similarity=0.246 Sum_probs=102.8
Q ss_pred CCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcC
Q 015178 189 PNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLS 263 (412)
Q Consensus 189 ~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls 263 (412)
...++++ +|+++ ++++.+++++.+|++.|.++ ++ +.+||||++|+++|+ +|
T Consensus 135 ~~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~pVvd~~~~lvGi-------------------vt 190 (286)
T 2oux_A 135 EDETAGA--IMTTE-FVSIVANQTVRSAMYVLKNQADMAETI--YYVYVVDQENHLVGV-------------------IS 190 (286)
T ss_dssp CTTBHHH--HCBSC-CCEECSSSBHHHHHHHHHHHCSSCSCC--SEEEEECTTCBEEEE-------------------EE
T ss_pred ChHHHHH--hCCCC-ceEECCCCcHHHHHHHHHHcccCccce--eEEEEEcCCCeEEEE-------------------EE
Confidence 3456665 68888 99999999999999999998 77 889999999999999 55
Q ss_pred HhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC
Q 015178 264 AGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE 343 (412)
Q Consensus 264 ~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~ 343 (412)
..|++.... ..++.++|.++
T Consensus 191 ~~dll~~~~------------------------------------------------------------~~~v~~im~~~ 210 (286)
T 2oux_A 191 LRDLIVNDD------------------------------------------------------------DTLIADILNER 210 (286)
T ss_dssp HHHHTTSCT------------------------------------------------------------TSBHHHHSBSC
T ss_pred HHHHHcCCC------------------------------------------------------------CCcHHHHcCCC
Confidence 666654100 01134578888
Q ss_pred ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178 344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~ 394 (412)
+++|++++++.+++.+|.+++++++||||++|+++||||..||++.+.+..
T Consensus 211 ~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~ 261 (286)
T 2oux_A 211 VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA 261 (286)
T ss_dssp CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988653
No 82
>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1
Probab=99.60 E-value=4.9e-15 Score=129.88 Aligned_cols=134 Identities=16% Similarity=0.194 Sum_probs=109.7
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|..++|+++|..+.+++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~ 66 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQV-GNNLEHALLVLTKTGYTAIPVLDP----------------------SYRLHGLIGTN 66 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEET-TCBHHHHHHHHHHHCCSEEEEECT----------------------TCBEEEEEEHH
T ss_pred HHhHhhHHHHhCCccceEEECC-CCcHHHHHHHHHhCCCcEEEEECC----------------------CCCEEEEeEHH
Confidence 4668899999964337999999 999999999999999999999995 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+.++...... ........+|+++|... +.++.+++++.+|++.|. +++ +||+++ +
T Consensus 67 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--lpVvd~----------------~ 124 (159)
T 1yav_A 67 MIMNSIFGLERI-EFEKLDQITVEEVMLTD---IPRLHINDPIMKGFGMVINNGF--VCVEND----------------E 124 (159)
T ss_dssp HHHHHHBCSSSB-CGGGTTTSBHHHHSBCS---CCEEETTSBHHHHHHHTTTCSE--EEEECT----------------T
T ss_pred HHHHHhhhhccc-chhhhccCCHHHhcCCC---CceEcCCCCHHHHHHHHHhCCE--EEEEeC----------------C
Confidence 999987653221 11223457899999855 889999999999999999 665 888753 3
Q ss_pred CCeeeeecHHHHHHHHHHcc
Q 015178 163 DSEYCWLTQEDLIRYFLNCI 182 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~ 182 (412)
++++|+||+.||++++.+..
T Consensus 125 g~~vGiit~~dil~~~~~~~ 144 (159)
T 1yav_A 125 QVFEGIFTRRVVLKELNKHI 144 (159)
T ss_dssp CBEEEEEEHHHHHHHHHHHC
T ss_pred CeEEEEEEHHHHHHHHHHHH
Confidence 67899999999999987643
No 83
>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}
Probab=99.60 E-value=6.5e-15 Score=128.38 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=108.7
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
.|..++|+++|....+++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~----------------------~~~~~Givt~~ 63 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQP-GNYLDHALLVLTKTGYSAIPVLDT----------------------SYKLHGLISMT 63 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCT-TSBHHHHHHHHHHSSSSEEEEECT----------------------TCCEEEEEEHH
T ss_pred hHhhCcHHhhccCCccceEECC-CCcHHHHHHHHHHCCceEEEEEcC----------------------CCCEEEEeeHH
Confidence 4668899999964347899999 999999999999999999999995 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+.++...... ........+++++|... +.++++++++.+|++.|. +++ +||+++ +
T Consensus 64 dl~~~~~~~~~~-~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~----------------~ 121 (157)
T 2emq_A 64 MMMDAILGLERI-EFERLETMKVEEVMNRN---IPRLRLDDSLMKAVGLIVNHPF--VCVEND----------------D 121 (157)
T ss_dssp HHHHHSBCSSSB-CGGGGGTCBGGGTCBCC---CCEEETTSBHHHHHHHHHHSSE--EEEECS----------------S
T ss_pred HHHHHHhccccc-chHHhcCCcHHHHhCCC---CceecCCCcHHHHHHHHhhCCE--EEEEcC----------------C
Confidence 999987642211 11123457899999855 889999999999999999 776 888753 3
Q ss_pred CCeeeeecHHHHHHHHHHccC
Q 015178 163 DSEYCWLTQEDLIRYFLNCIG 183 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~~~ 183 (412)
++++|+||..||++++.....
T Consensus 122 g~~~Giit~~dil~~~~~~~~ 142 (157)
T 2emq_A 122 GYFAGIFTRREVLKQLNKQLH 142 (157)
T ss_dssp SSEEEEEEHHHHHHHHHHTTC
T ss_pred CeEEEEEEHHHHHHHHHHHhh
Confidence 678999999999999987543
No 84
>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}
Probab=99.60 E-value=5.1e-15 Score=132.96 Aligned_cols=124 Identities=14% Similarity=0.096 Sum_probs=105.7
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
|...+|+++|...++++++++ ++|+.+|++.|.+++++++||++.+ .++++|+|+..|
T Consensus 33 l~~~~v~diM~~~~~v~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~D 90 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNI-DDDAATIRQQLTAAPHSFFPVCRGS---------------------LDEVVGIGRAKD 90 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEET-TSCHHHHHHHHHHSSCSEEEEESSS---------------------TTSEEEEEEHHH
T ss_pred cCCCCHHHhCCcHHHeEEEeC-CCCHHHHHHHHHhCCCCEEEEEeCC---------------------CCCEEEEEEHHH
Confidence 567899999975567999999 9999999999999999999999853 268999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
|+.++.+.. ..+++ +| .. ++++.+++++.+|++.|. ++++++||+++ ++
T Consensus 91 l~~~~~~~~---------~~~v~-~~-~~---~~~v~~~~~l~~al~~m~~~~~~~~~Vvde----------------~g 140 (173)
T 3ocm_A 91 LVADLITEG---------RVRRN-RL-RD---PIIVHESIGILRLMDTLKRSRGQLVLVADE----------------FG 140 (173)
T ss_dssp HHHHHHHHS---------SCCGG-GS-BC---CCEECGGGCHHHHHHHHHHSTTCCEEEECT----------------TC
T ss_pred HHHHHhcCC---------cchhH-hc-CC---CeEECCCCcHHHHHHHHHHcCCeEEEEEeC----------------CC
Confidence 999876421 35677 44 33 689999999999999999 89999999863 36
Q ss_pred CeeeeecHHHHHHHHHH
Q 015178 164 SEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~ 180 (412)
+++||||..||++.+..
T Consensus 141 ~lvGiIT~~Dil~~l~~ 157 (173)
T 3ocm_A 141 AIEGLVTPIDVFEAIAG 157 (173)
T ss_dssp CEEEEECHHHHHHHHHC
T ss_pred CEEEEEeHHHHHHHHhC
Confidence 79999999999999864
No 85
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1
Probab=99.59 E-value=7.9e-15 Score=129.14 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=107.5
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDI 85 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Di 85 (412)
+.++|+|+|. ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..||
T Consensus 3 ~~~~v~dim~--~~~~~v~~-~~tl~~a~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~dl 57 (160)
T 2o16_A 3 LMIKVEDMMT--RHPHTLLR-THTLNDAKHLMEALDIRHVPIVDA----------------------NKKLLGIVSQRDL 57 (160)
T ss_dssp CCCBGGGTSE--ESCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHHHH
T ss_pred CcCcHHHHhc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHHHH
Confidence 4678999995 57899999 999999999999999999999995 3689999999999
Q ss_pred HHHhhhccc-CC-CcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 86 ISFLCKEEN-LL-NPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 86 l~~l~~~~~-l~-~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
+.++..... .. ........+++++|... +++++++++|.+|++.|. ++++++||+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------- 117 (160)
T 2o16_A 58 LAAQESSLQRSAQGDSLAFETPLFEVMHTD---VTSVAPQAGLKESAIYMQKHKIGCLPVVAK----------------- 117 (160)
T ss_dssp HHHHHHHCC---------CCCBHHHHSCSC---EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-----------------
T ss_pred HHHHHHhhcccccccchhcccCHHHHhcCC---CeEECCCCCHHHHHHHHHHhCCCEEEEEEC-----------------
Confidence 998764100 00 00112357899999855 899999999999999999 89999999852
Q ss_pred CCeeeeecHHHHHHHHHHc
Q 015178 163 DSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~ 181 (412)
++++|+||..||++++.+.
T Consensus 118 g~lvGiit~~dil~~~~~~ 136 (160)
T 2o16_A 118 DVLVGIITDSDFVTIAINL 136 (160)
T ss_dssp TEEEEEECHHHHHHHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHH
Confidence 5689999999999998763
No 86
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.59 E-value=6.6e-15 Score=141.79 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=100.1
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA 264 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~ 264 (412)
..++++ +|+++ ++++.+++++.+|++.|.++ ++ +.+||+|++|+++|+ ++.
T Consensus 134 ~~~v~~--iM~~~-~~~v~~~~tv~ea~~~~~~~~~~~~~~--~~~~Vvd~~~~lvGi-------------------vt~ 189 (278)
T 2yvy_A 134 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSL 189 (278)
T ss_dssp TTBGGG--TCBSC-CCEECTTSBHHHHHHHHHHHTTTCSCS--SEEEEECTTCBEEEE-------------------EEH
T ss_pred cchHHh--hcCCC-ceEECCCCcHHHHHHHHHHccCCccce--eEEEEECCCCCEEEE-------------------EEH
Confidence 345554 78888 99999999999999999987 78 999999999999999 566
Q ss_pred hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178 265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA 344 (412)
Q Consensus 265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v 344 (412)
+|++.... ..++.++|.+++
T Consensus 190 ~dll~~~~------------------------------------------------------------~~~v~~im~~~~ 209 (278)
T 2yvy_A 190 RDLIVADP------------------------------------------------------------RTRVAEIMNPKV 209 (278)
T ss_dssp HHHHHSCT------------------------------------------------------------TCBSTTTSBSSC
T ss_pred HHHhcCCC------------------------------------------------------------CCcHHHHhCCCC
Confidence 77654100 011356788899
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
++|++++++.+++++|.+++++++||||++|+++||||..||++.+.+.
T Consensus 210 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~e 258 (278)
T 2yvy_A 210 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 258 (278)
T ss_dssp CCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC---
T ss_pred eEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998754
No 87
>2uv4_A 5'-AMP-activated protein kinase subunit gamma-1; transferase, CBS domain, lipid synthesis, fatty acid biosynthesis; HET: AMP; 1.33A {Homo sapiens} PDB: 2uv5_A* 2uv6_A* 2uv7_A*
Probab=99.59 E-value=6.9e-15 Score=128.11 Aligned_cols=127 Identities=16% Similarity=0.166 Sum_probs=104.4
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
|.+.+|+++ ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..|
T Consensus 20 l~~~~v~~~----~~~~~v~~-~~~~~~a~~~m~~~~~~~~pVvd~----------------------~~~~vGivt~~d 72 (152)
T 2uv4_A 20 LEELQIGTY----ANIAMVRT-TTPVYVALGIFVQHRVSALPVVDE----------------------KGRVVDIYSKFD 72 (152)
T ss_dssp HHHHTCSBC----SSCCCEET-TCBHHHHHHHHHHHCCSEEEEECT----------------------TSBEEEEEEHHH
T ss_pred HHHccCCcc----CCceEeCC-CCcHHHHHHHHHHcCCceEeEECC----------------------CCcEEEEEeHHH
Confidence 456677777 57899999 999999999999999999999995 368999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCC---CCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEA---SGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~---~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
|+.++..... .....+++++|... ..++.++.+++++.+|++.|. ++++++||+++
T Consensus 73 l~~~~~~~~~-----~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------------- 132 (152)
T 2uv4_A 73 VINLAAEKTY-----NNLDVSVTKALQHRSHYFEGVLKCYLHETLETIINRLVEAEVHRLVVVDE--------------- 132 (152)
T ss_dssp HHHHHHCSSC-----CCTTSBGGGGGGTCCHHHHTCSEECTTSBHHHHHHHHHHHTCSEEEEECT---------------
T ss_pred HHHHhcchhh-----hhhcchHHHHHhhhhcccCCCeEECCCCcHHHHHHHHHHcCCeEEEEECC---------------
Confidence 9998764210 12356799999621 023789999999999999999 89999999863
Q ss_pred CCCCeeeeecHHHHHHHHH
Q 015178 161 HNDSEYCWLTQEDLIRYFL 179 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~ 179 (412)
+++++|+||..||++++.
T Consensus 133 -~g~~vGiit~~dil~~l~ 150 (152)
T 2uv4_A 133 -NDVVKGIVSLSDILQALV 150 (152)
T ss_dssp -TSBEEEEEEHHHHHHHHC
T ss_pred -CCeEEEEEEHHHHHHHHH
Confidence 367899999999999874
No 88
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=99.58 E-value=2e-15 Score=134.24 Aligned_cols=134 Identities=20% Similarity=0.191 Sum_probs=106.8
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
.++|+|+|..+.+++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..||+
T Consensus 3 ~~~v~dim~~~~~~~~v~~-~~~l~~a~~~m~~~~~~~~pVvd~----------------------~~~~~Givt~~dl~ 59 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKP-STSVDDALELLVEKKVTGLPVIDD----------------------NWTLVGVVSDYDLL 59 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEEEHHHHT
T ss_pred ceeHHHhcCCCCCceeeCC-CCcHHHHHHHHHHcCCCeEEEECC----------------------CCeEEEEEEHHHHH
Confidence 3689999974447999999 999999999999999999999996 36899999999998
Q ss_pred HHhhhccc------C-------CC--------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecC
Q 015178 87 SFLCKEEN------L-------LN--------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPL 144 (412)
Q Consensus 87 ~~l~~~~~------l-------~~--------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~ 144 (412)
+++..... + +. .......+++++|... ++++.++++|.+|++.|. ++++++||++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd 136 (180)
T 3sl7_A 60 ALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPS---PLVVRDSTNLEDAARLLLETKFRRLPVVD 136 (180)
T ss_dssp CC-------------------CCCSHHHHHHHHHTTTTCBHHHHSEES---CCCEETTSBHHHHHHHHTTSTTCEEEEEC
T ss_pred hhhhhccccCCcccccccccchhhhhHHHHHHHhccccccHHHHhCCC---ceEeCCCCcHHHHHHHHHHcCCCEEEEEC
Confidence 64321000 0 00 0112357899999855 789999999999999999 8999999986
Q ss_pred CCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHcc
Q 015178 145 PAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCI 182 (412)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~ 182 (412)
+ +++++|+||+.||++++.+..
T Consensus 137 ~----------------~g~~vGiit~~dil~~~~~~~ 158 (180)
T 3sl7_A 137 A----------------DGKLIGILTRGNVVRAALQIK 158 (180)
T ss_dssp T----------------TCBEEEEEEHHHHHHHHHHHH
T ss_pred C----------------CCeEEEEEEHHHHHHHHHHHh
Confidence 3 367999999999999998743
No 89
>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A
Probab=99.58 E-value=1.7e-15 Score=128.41 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=103.4
Q ss_pred ccccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEeh
Q 015178 3 VRLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCM 82 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~ 82 (412)
++++-++++++|. ++++++++ ++|+.+|++.|.++++.++||+|+ +++++|+|+.
T Consensus 3 d~~~~~~v~~im~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Givt~ 57 (133)
T 1y5h_A 3 DPFTMTTARDIMN--AGVTCVGE-HETLTAAAQYMREHDIGALPICGD----------------------DDRLHGMLTD 57 (133)
T ss_dssp -----CCHHHHSE--ETCCCEET-TSBHHHHHHHHHHHTCSEEEEECG----------------------GGBEEEEEEH
T ss_pred ChhhhcCHHHHhc--CCceEeCC-CCCHHHHHHHHHHhCCCeEEEECC----------------------CCeEEEEEeH
Confidence 3567789999996 57889999 999999999999999999999985 3689999999
Q ss_pred HHHHH-HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 83 VDIIS-FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 83 ~Dil~-~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
.|++. ++.+... ....+++++|... +.++++++++.+|++.|. ++++++||+++
T Consensus 58 ~dl~~~~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~--------------- 113 (133)
T 1y5h_A 58 RDIVIKGLAAGLD------PNTATAGELARDS---IYYVDANASIQEMLNVMEEHQVRRVPVISE--------------- 113 (133)
T ss_dssp HHHHHTTGGGTCC------TTTSBHHHHHTTC---CCCEETTCCHHHHHHHHHHHTCSEEEEEET---------------
T ss_pred HHHHHHHHhcCCC------ccccCHHHHhcCC---CEEECCCCCHHHHHHHHHHcCCCEEEEEEC---------------
Confidence 99994 5543211 1247899999755 889999999999999999 89999999853
Q ss_pred CCCCeeeeecHHHHHHHHH
Q 015178 161 HNDSEYCWLTQEDLIRYFL 179 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~ 179 (412)
++++|+||..||++++.
T Consensus 114 --g~~~Giit~~dil~~l~ 130 (133)
T 1y5h_A 114 --HRLVGIVTEADIARHLP 130 (133)
T ss_dssp --TEEEEEEEHHHHHHTCC
T ss_pred --CEEEEEEEHHHHHHHHH
Confidence 56899999999998764
No 90
>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A
Probab=99.58 E-value=1.2e-14 Score=124.37 Aligned_cols=131 Identities=16% Similarity=0.168 Sum_probs=106.1
Q ss_pred cccccchhc---cccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178 4 RLLSVGVSD---LCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV 80 (412)
Q Consensus 4 ~~~~~~v~d---l~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv 80 (412)
.+.+.++++ +| .++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|
T Consensus 4 ~~~~~~v~~~~~~~--~~~~~~v~~-~~~~~~a~~~~~~~~~~~~~Vvd~----------------------~~~~~Giv 58 (144)
T 2nyc_A 4 HFLKIPIGDLNIIT--QDNMKSCQM-TTPVIDVIQMLTQGRVSSVPIIDE----------------------NGYLINVY 58 (144)
T ss_dssp GGGGSBGGGSSCCB--CSSCCCBCT-TSBHHHHHHHHHHHTCSEEEEECT----------------------TCBEEEEE
T ss_pred chhhcchhhcCCCC--CCCceEECC-CCcHHHHHHHHHHcCcceeeEEcC----------------------CCcEEEEE
Confidence 355778899 55 367999999 999999999999999999999995 36899999
Q ss_pred ehHHHHHHhhhcccCCCcccccCCchhhhccCCC---CceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCC
Q 015178 81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEAS---GVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSL 156 (412)
Q Consensus 81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~---~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~ 156 (412)
+..||+.++.+.. ......+++++|.... .++.+++++++|.+|++.|. ++++++||+++
T Consensus 59 t~~dl~~~~~~~~-----~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~----------- 122 (144)
T 2nyc_A 59 EAYDVLGLIKGGI-----YNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD----------- 122 (144)
T ss_dssp EHHHHHHHHHTC---------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-----------
T ss_pred cHHHHHHHhcccc-----cccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC-----------
Confidence 9999999876421 1123578999996421 14789999999999999999 89999999863
Q ss_pred CcccCCCCeeeeecHHHHHHHHHH
Q 015178 157 KSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 157 ~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+++++|+||..||++++.+
T Consensus 123 -----~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 123 -----VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp -----TSBEEEEEEHHHHHHHHHH
T ss_pred -----CCCEEEEEEHHHHHHHHHh
Confidence 3678999999999999865
No 91
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=99.57 E-value=7.2e-15 Score=127.61 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=103.2
Q ss_pred cchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHH
Q 015178 8 VGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIIS 87 (412)
Q Consensus 8 ~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~ 87 (412)
++|+|+|....+++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..||+.
T Consensus 28 ~~v~dim~~~~~~~~v~~-~~~~~~a~~~m~~~~~~~~~Vvd~----------------------~~~~~Givt~~dl~~ 84 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGL-QATLRDALLEITRKNLGMTAICDD----------------------DMNIIGIFTDGDLRR 84 (149)
T ss_dssp SBGGGTSBCGGGSCEECT-TCBHHHHHHHHHHHTSSEEEEECT----------------------TCBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCCCCeEECC-CCcHHHHHHHHHhCCCcEEEEECC----------------------CCcEEEEecHHHHHH
Confidence 589999963227999999 999999999999999999999995 368999999999999
Q ss_pred HhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCee
Q 015178 88 FLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEY 166 (412)
Q Consensus 88 ~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v 166 (412)
.+.+... ....+++++|... ++++++++++.+|++.|. ++++++||+++ ++++
T Consensus 85 ~~~~~~~------~~~~~v~~~m~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----------------~~~~ 138 (149)
T 3k2v_A 85 VFDTGVD------MRDASIADVMTRG---GIRIRPGTLAVDALNLMQSRHITCVLVADG-----------------DHLL 138 (149)
T ss_dssp HHCSSSC------CTTCBHHHHSEES---CCEECTTCBHHHHHHHHHHHTCSEEEEEET-----------------TEEE
T ss_pred HHhcCCC------cccCcHHHHcCCC---CeEECCCCCHHHHHHHHHHcCCCEEEEecC-----------------CEEE
Confidence 8865221 2357899999755 789999999999999999 89999999863 2688
Q ss_pred eeecHHHHHH
Q 015178 167 CWLTQEDLIR 176 (412)
Q Consensus 167 ~iITq~DIv~ 176 (412)
|+||..||++
T Consensus 139 Giit~~dil~ 148 (149)
T 3k2v_A 139 GVVHMHDLLR 148 (149)
T ss_dssp EEEEHHHHTC
T ss_pred EEEEHHHhhc
Confidence 9999999974
No 92
>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*
Probab=99.56 E-value=1.1e-14 Score=130.08 Aligned_cols=138 Identities=15% Similarity=0.119 Sum_probs=107.9
Q ss_pred ccccccchhccccCCCC--eEEE--ecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEE
Q 015178 3 VRLLSVGVSDLCIGKPA--LRSL--SVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIG 78 (412)
Q Consensus 3 ~~~~~~~v~dl~~~~~~--lv~v--~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 78 (412)
.++...+|+|+|....+ ++++ ++ ++|+.+|++.|.+++++++||++.+. +++++|
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~-~~~~~~a~~~~~~~~~~~~pVv~~d~--------------------~~~lvG 64 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQD-SMTVEDVETIISETTYSGFPVVVSRE--------------------SQRLVG 64 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESS-CEEHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEE
T ss_pred hhhccCcHHHHhcccccCceEEEecCC-CccHHHHHHHHHhcCCCceeEEEECC--------------------CCeEEE
Confidence 46788999999974422 7777 99 99999999999999999999994211 468999
Q ss_pred EEehHHHHHHhhhccc----CCC--------------cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCce
Q 015178 79 KVCMVDIISFLCKEEN----LLN--------------PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQN 139 (412)
Q Consensus 79 ivt~~Dil~~l~~~~~----l~~--------------~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~R 139 (412)
+|+..||+.++..... +.. .......+++++|... ++++.++++|.+|++.|. +++++
T Consensus 65 iit~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~ 141 (185)
T 2j9l_A 65 FVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLS---PFTVTDLTPMEIVVDIFRKLGLRQ 141 (185)
T ss_dssp EEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCCEECGGGEESS---CCEEETTSBHHHHHHHHHHHTCSE
T ss_pred EEEHHHHHHHHHhhcccCCCccccceeecccCCcccccccccCccHHHhhCcC---CeEeCCCCCHHHHHHHHHhCCCcE
Confidence 9999999998764210 000 0012346799999755 889999999999999999 99999
Q ss_pred eeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHc
Q 015178 140 LVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 140 l~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~ 181 (412)
+||++ +++++|+||..||++++.+.
T Consensus 142 l~Vvd-----------------~g~~vGiit~~dll~~l~~~ 166 (185)
T 2j9l_A 142 CLVTH-----------------NGRLLGIITKKDVLKHIAQM 166 (185)
T ss_dssp EEEEE-----------------TTEEEEEEEHHHHHHHHHHH
T ss_pred EEEEE-----------------CCEEEEEEEHHHHHHHHHHh
Confidence 99985 25689999999999999874
No 93
>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1
Probab=99.56 E-value=4.1e-14 Score=123.83 Aligned_cols=129 Identities=10% Similarity=0.085 Sum_probs=105.5
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCce-EEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESY-ISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~s-vPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
...+|+++|. ++++++++ ++|+.+|++.|.++++.+ +||+|. + +++|+|+..|
T Consensus 14 ~~~~v~~im~--~~~~~v~~-~~tl~ea~~~m~~~~~~~~~~Vvd~----------------------~-~~vGivt~~d 67 (157)
T 1o50_A 14 KVKDVCKLIS--LKPTVVEE-DTPIEEIVDRILEDPVTRTVYVARD----------------------N-KLVGMIPVMH 67 (157)
T ss_dssp BHHHHTTSSC--CCCEEECT-TCBHHHHHHHHHHSTTCCEEEEEET----------------------T-EEEEEEEHHH
T ss_pred ccccHhhccc--CCCceECC-CCCHHHHHHHHHhCCCCccEEEEEC----------------------C-EEEEEEEHHH
Confidence 4567999994 67999999 999999999999999999 999994 3 8999999999
Q ss_pred HHHHhhh--------cccCCC-cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCC
Q 015178 85 IISFLCK--------EENLLN-PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKP 154 (412)
Q Consensus 85 il~~l~~--------~~~l~~-~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~ 154 (412)
|+.++.. .+.+.. .......+++++|. . +++++++++|.+|++.|. ++++++||+++
T Consensus 68 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~---~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--------- 134 (157)
T 1o50_A 68 LLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIML---D-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE--------- 134 (157)
T ss_dssp HHHHHHHHHHCCCC-------CCCCCSSCBHHHHCB---C-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT---------
T ss_pred HHHHHhhhHHhhhccHHHHHHHHHHHcCCcHHHHcC---C-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC---------
Confidence 9987641 000000 01224578999997 3 789999999999999999 89999999863
Q ss_pred CCCcccCCCCeeeeecHHHHHHHHHH
Q 015178 155 SLKSTFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 155 ~~~~~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+++++|+||..||++++.+
T Consensus 135 -------~g~~vGiit~~dll~~l~~ 153 (157)
T 1o50_A 135 -------KGEIVGDLNSLEILLALWK 153 (157)
T ss_dssp -------TSCEEEEEEHHHHHHHHHH
T ss_pred -------CCEEEEEEEHHHHHHHHHH
Confidence 3678999999999999876
No 94
>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}
Probab=99.56 E-value=5.4e-15 Score=129.78 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=103.6
Q ss_pred cccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 4 RLLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 4 ~~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
-|...+|+|+|....+++++++ ++|+.+|++.|.+++++++||++.+ .++++|+|+..
T Consensus 34 ~l~~~~v~diM~~~~~~~~v~~-~~~i~~a~~~m~~~~~~~~pVvd~~---------------------~~~lvGivt~~ 91 (156)
T 3oi8_A 34 DFSDLEVRDAMITRSRMNVLKE-NDSIERITAYVIDTAHSRFPVIGED---------------------KDEVLGILHAK 91 (156)
T ss_dssp HHTTCBGGGTCEEGGGCCCEET-TCCHHHHHHHHHHHCCSEEEEESSS---------------------TTCEEEEEEGG
T ss_pred ccCCCCHhheeeeHHHeEEECC-CCCHHHHHHHHHHCCCCEEEEEcCC---------------------CCcEEEEEEHH
Confidence 3567899999974447999999 9999999999999999999999953 24899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||+..+.+. ...+++++|. +++++.+++++.+|++.|. ++++++||+++ +
T Consensus 92 dl~~~~~~~---------~~~~v~~im~----~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~----------------~ 142 (156)
T 3oi8_A 92 DLLKYMFNP---------EQFHLKSILR----PAVFVPEGKSLTALLKEFREQRNHMAIVIDE----------------Y 142 (156)
T ss_dssp GGGGGSSCG---------GGCCHHHHCB----CCCEEETTSBHHHHHHHHHHTTCCEEEEECT----------------T
T ss_pred HHHHHHHcC---------CcccHHHHcC----CCEEECCCCCHHHHHHHHHhcCCeEEEEECC----------------C
Confidence 999876531 3467999995 2689999999999999999 89999999863 3
Q ss_pred CCeeeeecHHHHH
Q 015178 163 DSEYCWLTQEDLI 175 (412)
Q Consensus 163 ~~~v~iITq~DIv 175 (412)
++++|+||..||+
T Consensus 143 g~~~Givt~~Dil 155 (156)
T 3oi8_A 143 GGTSGLVTFEDII 155 (156)
T ss_dssp SSEEEEEEHHHHC
T ss_pred CCEEEEEEHHHhc
Confidence 6789999999986
No 95
>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=124.99 Aligned_cols=136 Identities=12% Similarity=0.109 Sum_probs=108.1
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
+..++|+|+|. +++++++. ++|+.+|++.|.++++.++||+|.+. +++++|+|+..|
T Consensus 10 ~~~~~v~dim~--~~~~~v~~-~~~~~~a~~~~~~~~~~~~pVvd~~~--------------------~~~~~Givt~~d 66 (164)
T 2pfi_A 10 SHHVRVEHFMN--HSITTLAK-DTPLEEVVKVVTSTDVTEYPLVESTE--------------------SQILVGIVQRAQ 66 (164)
T ss_dssp CCSCBHHHHCB--CCCCCEET-TCBHHHHHHHHHTCCCSEEEEESCTT--------------------TCBEEEEEEHHH
T ss_pred ccCCCHHHHcC--CCCeEECC-CCcHHHHHHHHHhCCCCceeEEecCC--------------------CCEEEEEEEHHH
Confidence 34678999995 57899999 99999999999999999999999511 368999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCC--CCc-eEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEA--SGV-IRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~--~~~-~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
|+.++...... .......+++++|... ..+ ++++++++++.+|++.|. ++++++||+++
T Consensus 67 l~~~~~~~~~~--~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~--------------- 129 (164)
T 2pfi_A 67 LVQALQAEPPS--RAPGHQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSR--------------- 129 (164)
T ss_dssp HHHHHHC---------CCCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEET---------------
T ss_pred HHHHHHhhccc--cCCcccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEEC---------------
Confidence 99987642110 0112346799999744 223 679999999999999999 89999999852
Q ss_pred CCCCeeeeecHHHHHHHHHHcc
Q 015178 161 HNDSEYCWLTQEDLIRYFLNCI 182 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~~~~ 182 (412)
++++|+||+.||++++.+..
T Consensus 130 --g~l~Giit~~dil~~~~~~~ 149 (164)
T 2pfi_A 130 --GRAVGCVSWVEMKKAISNLT 149 (164)
T ss_dssp --TEEEEEEEHHHHHHHHHHHH
T ss_pred --CEEEEEEEHHHHHHHHHhhh
Confidence 56899999999999987743
No 96
>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A
Probab=99.54 E-value=2.7e-14 Score=128.54 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=106.2
Q ss_pred ccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHH
Q 015178 7 SVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDII 86 (412)
Q Consensus 7 ~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil 86 (412)
+++|+++|. ++++++++ ++|+.+|++.|.++++.++||+|. +++++|+|+..||+
T Consensus 8 ~~~v~~im~--~~~~~v~~-~~~l~ea~~~~~~~~~~~~pVvd~----------------------~g~~vGivt~~dl~ 62 (184)
T 1pvm_A 8 FMRVEKIMN--SNFKTVNW-NTTVFDAVKIMNENHLYGLVVKDD----------------------NGNDVGLLSERSII 62 (184)
T ss_dssp CCBGGGTSB--TTCCEEET-TCBHHHHHHHHHHHTCCEEEEECT----------------------TSCEEEEEEHHHHH
T ss_pred ccCHHHhcC--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEcC----------------------CCcEEEEEeHHHHH
Confidence 478999995 67999999 999999999999999999999985 36899999999999
Q ss_pred HHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCe
Q 015178 87 SFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSE 165 (412)
Q Consensus 87 ~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~ 165 (412)
.++.... ......+++++|... ++++.+++++.+|++.|. ++++++||+++ +++.
T Consensus 63 ~~~~~~~-----~~~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~----------------~g~~ 118 (184)
T 1pvm_A 63 KRFIPRN-----KKPDEVPIRLVMRKP---IPKVKSDYDVKDVAAYLSENGLERCAVVDD----------------PGRV 118 (184)
T ss_dssp HHTGGGC-----CCGGGSBGGGTSBSS---CCEEETTCBHHHHHHHHHHHTCSEEEEECT----------------TCCE
T ss_pred HHHhhcc-----cCcccCCHHHHhCCC---CcEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CCeE
Confidence 9876421 112346799999754 889999999999999999 89999999863 2578
Q ss_pred eeeecHHHHHHHHHH
Q 015178 166 YCWLTQEDLIRYFLN 180 (412)
Q Consensus 166 v~iITq~DIv~~l~~ 180 (412)
+|+||..||++++.+
T Consensus 119 ~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 119 VGIVTLTDLSRYLSR 133 (184)
T ss_dssp EEEEEHHHHTTTSCH
T ss_pred EEEEEHHHHHHHHHh
Confidence 999999999987643
No 97
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=99.51 E-value=6e-14 Score=133.77 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=103.1
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
..+++|+|+|. ++++++.+ ++|+.+|.++|.++++.++||+|.++ .++++|||+..|
T Consensus 10 ~~~~~v~diMt--~~vvtv~~-~~tv~~~~~lm~~~~~~~~PVVd~~~--------------------~~~LvGiIt~~d 66 (250)
T 2d4z_A 10 KYNIQVGDIMV--RDVTSIAS-TSTYGDLLHVLRQTKLKFFPFVDTPD--------------------TNTLLGSIDRTE 66 (250)
T ss_dssp CSSCBTTSSSB--SSCCCEET-TCBHHHHHHHHHHCCCSEEEEESCTT--------------------TCBEEEEEEHHH
T ss_pred cCCCChHHhcC--CCCeEECC-CCCHHHHHHHHHhcCCCEEEEEecCC--------------------CCeEEEEEEHHH
Confidence 45789999995 68999999 99999999999999999999999532 258999999999
Q ss_pred HHHHhhhc---ccC--CC---------------------c------c---------------------------------
Q 015178 85 IISFLCKE---ENL--LN---------------------P------E--------------------------------- 99 (412)
Q Consensus 85 il~~l~~~---~~l--~~---------------------~------~--------------------------------- 99 (412)
|++.+... ... .. . .
T Consensus 67 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 146 (250)
T 2d4z_A 67 VEGLLQRRISAYRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEP 146 (250)
T ss_dssp HHHHHHHHHHTTSSSCCCCCCBCCC-------------------------------------------------------
T ss_pred HHHHHHHhhhhhhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccc
Confidence 99876521 000 00 0 0
Q ss_pred -----------------------------------cccCCch--h-hhccCCCCceEecCCCCcHHHHHHHHh-cCCcee
Q 015178 100 -----------------------------------SALQDPV--S-VLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNL 140 (412)
Q Consensus 100 -----------------------------------~~l~~~V--~-dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl 140 (412)
..+..+| + .+|... +++|.++++|.+|..+|. .|++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~s---P~tv~~~tsL~~v~~LF~~lglr~l 223 (250)
T 2d4z_A 147 TQTSGIYQKKQKGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQS---PFQLVEGTSLQKTHTLFSLLGLDRA 223 (250)
T ss_dssp --------------------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECC---SCCBCTTCBHHHHHHHHHHHTCSEE
T ss_pred cccccccccccccccccCcccccccChhhhhhHHHHhcCceeccccccccCC---CeEECCCCcHHHHHHHHHHhCCeEE
Confidence 0022233 2 245544 789999999999999999 999999
Q ss_pred eecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHH
Q 015178 141 VIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFL 179 (412)
Q Consensus 141 ~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~ 179 (412)
+|++ .|+++||||..||++.+.
T Consensus 224 ~V~~-----------------~GrLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 224 YVTS-----------------MGKLVGVVALAEIQAAIE 245 (250)
T ss_dssp EEEE-----------------TTEEEEEEEHHHHHHHHH
T ss_pred EEEE-----------------CCEEEEEEEHHHHHHHHH
Confidence 9984 368999999999999986
No 98
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.51 E-value=9.9e-14 Score=143.72 Aligned_cols=120 Identities=21% Similarity=0.249 Sum_probs=101.9
Q ss_pred CCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhc-----CCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCH
Q 015178 190 NQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQS-----HINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSA 264 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~-----~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~ 264 (412)
..++++ +|+++ ++++.+++++.+|++.|+++ ++ +.+||+|++++++|+ ++.
T Consensus 154 ~~~v~~--iM~~~-~v~v~~~~tv~ea~~~~~~~~~~~~~~--~~ipVvd~~~~lvGi-------------------Vt~ 209 (473)
T 2zy9_A 154 EDEAGG--LMTPE-YVAVREGMTVEEVLRFLRRAAPDAETI--YYIYVVDEKGRLKGV-------------------LSL 209 (473)
T ss_dssp TTBSTT--TCBSC-EEEECTTCBHHHHHHHHHHHGGGCSEE--EEEEEECTTSBEEEE-------------------EEH
T ss_pred CCCHHH--hCCCC-ceEeCCCCcHHHHHHHHHhccCCcCce--eEEEEECCCCcEEEE-------------------EEH
Confidence 344554 78888 99999999999999999986 57 999999998999999 566
Q ss_pred hhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCc
Q 015178 265 GDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEA 344 (412)
Q Consensus 265 ~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~v 344 (412)
+|++..- . ..+++++|++++
T Consensus 210 ~Dll~~~-~-----------------------------------------------------------~~~v~dim~~~~ 229 (473)
T 2zy9_A 210 RDLIVAD-P-----------------------------------------------------------RTRVAEIMNPKV 229 (473)
T ss_dssp HHHHHSC-T-----------------------------------------------------------TSBGGGTSBSSC
T ss_pred HHHhcCC-C-----------------------------------------------------------CCcHHHHhCCCC
Confidence 7765410 0 012456788899
Q ss_pred eEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 345 ILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 345 vt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
+++++++++.+++++|.+++++++||||++|+++|+||..||++.+.+.
T Consensus 230 ~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~e 278 (473)
T 2zy9_A 230 VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAE 278 (473)
T ss_dssp CCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHHH
T ss_pred eEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 99
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.49 E-value=6e-15 Score=157.99 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=99.8
Q ss_pred CCCcccccCCC--CCcEEEEeCCCcHHHHHHHHH-hcCCCCceeEEEcCCCcEeeeecCCccCCcchhH-HHhhhhcCHh
Q 015178 190 NQPINSLNIVD--DAGIFAIQYDEPAAFAIPLIA-QSHINQTSVALVDEEGRLVGDISPFSFNSCDETV-AAAMVTLSAG 265 (412)
Q Consensus 190 ~~~i~~L~i~~--~~~v~tv~~~~~~~~a~~~m~-~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~-~~~~~~ls~~ 265 (412)
..++++ +|+ ++ +.++++++++.|+.+.|. ++++ +++||||++|+++|+||..||.+.-... ...-..++..
T Consensus 452 ~~~V~d--iM~p~~~-v~~v~~~~t~~e~~~~~~~~~~~--~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~ 526 (632)
T 3org_A 452 EMTARE--IMHPIEG-EPHLFPDSEPQHIKGILEKFPNR--LVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGH 526 (632)
T ss_dssp TSBHHH--HCBCTTT-SCCBCSSSCHHHHHHHHHHSTTC--CEECBBCTTCBBCCEESHHHHTTTTTTC-----------
T ss_pred cCcHHH--HhhcCCC-ceEecCCCcHHHHHHHHHhcCCc--ceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccc
Confidence 345554 688 77 999999999999999999 7998 9999999999999997766665421000 0000000000
Q ss_pred hhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCce
Q 015178 266 DLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAI 345 (412)
Q Consensus 266 Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vv 345 (412)
+..... +..++.+ .++...+ + .|....... ..+..........+.++|+++++
T Consensus 527 ~~~~~~----~~~~l~~---------~~~~~~~---~--------~~~~~~~~~---~e~~~~~~~~~~~v~~iMt~~pi 579 (632)
T 3org_A 527 RTLVLL----DAADLSE---------NIEGLVD---E--------TPSGEHSSK---GKRTATVLEPTSSLVVPCDVSPI 579 (632)
T ss_dssp -----------------------------------------------------------------------CCSCCCCCC
T ss_pred cceecc----CHHHHHh---------hcccCCC---C--------Ccccchhhh---cccceEeeccccccchhhcCCCc
Confidence 000000 0000000 0000000 0 000000000 00000000111236789999999
Q ss_pred EeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 346 LCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 346 t~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
|+++++++.+++++|.++++|++||| ++|+++||||++||++++.+.
T Consensus 580 tV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 580 VVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp EEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCCC-
T ss_pred eecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHhhh
Confidence 99999999999999999999999999 568999999999998876544
No 100
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.49 E-value=3.6e-14 Score=148.79 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=102.3
Q ss_pred CCCcccccCCCCCcEEEEeCC-CcHHHHHHHHHhcCCCCceeEEEc-CCCcEeeeecCCccCCcchhHHHhhhhcCHhhh
Q 015178 190 NQPINSLNIVDDAGIFAIQYD-EPAAFAIPLIAQSHINQTSVALVD-EEGRLVGDISPFSFNSCDETVAAAMVTLSAGDL 267 (412)
Q Consensus 190 ~~~i~~L~i~~~~~v~tv~~~-~~~~~a~~~m~~~~i~~s~vpVVd-~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl 267 (412)
..++++ +|+++ ++++.++ +++.+|+++|.++++ +++||+| ++|+++|+ +|.+||
T Consensus 383 ~~~V~d--iM~~~-~vtv~~~~~tv~ea~~~m~~~~~--~~lpVvd~~~g~lvGi-------------------Vt~~Dl 438 (527)
T 3pc3_A 383 SLAIAE--LELPA-PPVILKSDATVGEAIALMKKHRV--DQLPVVDQDDGSVLGV-------------------VGQETL 438 (527)
T ss_dssp TSBGGG--GCCCC-CSCCEETTCBHHHHHHHHHHHTC--SEEEEECTTTCCEEEE-------------------EEHHHH
T ss_pred CCcHHH--hCcCC-CeEEcCCCCcHHHHHHHHHHcCC--CeEEEEECCCCEEEEE-------------------EEHHHH
Confidence 456665 68888 9999999 999999999999999 9999999 78999999 668888
Q ss_pred hhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEe
Q 015178 268 MAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILC 347 (412)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~ 347 (412)
++.+. ... . ....++.++|+++++++
T Consensus 439 l~~l~----------------------------~~~-------------~-------------~~~~~V~~im~~~~~~v 464 (527)
T 3pc3_A 439 ITQIV----------------------------SMN-------------R-------------QQSDPAIKALNKRVIRL 464 (527)
T ss_dssp HHHHH----------------------------HHC-------------C-------------CTTSBGGGGEETTCCEE
T ss_pred HHHHH----------------------------hcc-------------C-------------cCCCcHHHHhcCCCeEE
Confidence 76321 000 0 00123567899999999
Q ss_pred CCCCcHHHHHHHHHHcCCcEEEEEeCC----CcEEEEEehHHHHHHHHHHH
Q 015178 348 HPWSSLMAVIMQALARRVSYVWVVEED----CTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 348 ~~~~sl~~v~~~m~~~~ihrl~VVD~~----~~lvGIVT~~DIL~~l~~~~ 394 (412)
.+++++.+++++|.++++ +||||++ |+++||||++|||+++.++.
T Consensus 465 ~~~~~l~~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~~ 513 (527)
T 3pc3_A 465 NESEILGKLARVLEVDPS--VLILGKNPAGKVELKALATKLDVTTFIAAGK 513 (527)
T ss_dssp ETTSBHHHHHHHHTTCSE--EEEEEECSSSCEEEEEEEEHHHHHHHHHTCC
T ss_pred CCCCcHHHHHHHHhhCCE--EEEEeCCcccCCeEEEEEEHHHHHHHHHhcc
Confidence 999999999999977775 6999985 89999999999999998754
No 101
>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}
Probab=99.49 E-value=1.4e-13 Score=127.07 Aligned_cols=121 Identities=19% Similarity=0.170 Sum_probs=105.1
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhc---CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEe
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL---NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVC 81 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~---~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt 81 (412)
+...+++++|. ++++++++ +.|+.+|++.|.++ ++.++||+|. .++++|+|+
T Consensus 51 ~~~~~v~~iM~--~~~~~v~~-~~tv~eal~~~~~~~~~~~~~~~Vvd~----------------------~~~lvGivt 105 (205)
T 3kxr_A 51 YSENEIGRYTD--HQMLVLSD-KATVAQAQRFFRRIELDCNDNLFIVDE----------------------ADKYLGTVR 105 (205)
T ss_dssp SCTTCGGGGCB--CCCCEEET-TCBHHHHHHHHHHCCCTTCCEEEEECT----------------------TCBEEEEEE
T ss_pred CCcchHHhhcc--CceEEECC-CCcHHHHHHHHHhhCccCeeEEEEEcC----------------------CCeEEEEEE
Confidence 34668999995 67999999 99999999999998 8999999995 368999999
Q ss_pred hHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCccc
Q 015178 82 MVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTF 160 (412)
Q Consensus 82 ~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~ 160 (412)
..|++.. ....+|+++|... ++++.+++++.+|++.|. ++++++||+++
T Consensus 106 ~~dll~~------------~~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~--------------- 155 (205)
T 3kxr_A 106 RYDIFKH------------EPHEPLISLLSED---SRALTANTTLLDAAEAIEHSREIELPVIDD--------------- 155 (205)
T ss_dssp HHHHTTS------------CTTSBGGGGCCSS---CCCEETTSCHHHHHHHHHTSSCSEEEEECT---------------
T ss_pred HHHHHhC------------CCcchHHHHhcCC---CeEECCCCCHHHHHHHHHhcCCCEEEEEcC---------------
Confidence 9998642 1246799999755 889999999999999999 89999999963
Q ss_pred CCCCeeeeecHHHHHHHHHHc
Q 015178 161 HNDSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 161 ~~~~~v~iITq~DIv~~l~~~ 181 (412)
+|+++|+||..||++.+.+.
T Consensus 156 -~g~lvGiIT~~Dil~~i~~e 175 (205)
T 3kxr_A 156 -AGELIGRVTLRAATALVREH 175 (205)
T ss_dssp -TSBEEEEEEHHHHHHHHHHH
T ss_pred -CCeEEEEEEHHHHHHHHHHH
Confidence 36799999999999999764
No 102
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.42 E-value=3.4e-13 Score=140.92 Aligned_cols=114 Identities=19% Similarity=0.192 Sum_probs=97.5
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC--CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE--EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~--~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
+|..+ ++++.+++++.+|+++|.++++ +++||+|+ +++++|+ ++.+|++...+.
T Consensus 118 ~m~~d-~v~l~~~~tv~ea~~~m~~~~~--s~~pVvd~g~~~~lvGi-------------------Vt~rDl~~~~~~-- 173 (511)
T 3usb_A 118 GVISD-PFFLTPEHQVYDAEHLMGKYRI--SGVPVVNNLDERKLVGI-------------------ITNRDMRFIQDY-- 173 (511)
T ss_dssp CSSSS-CCCBCTTSBHHHHHHHHHHHCC--SEEEEESCTTTCBEEEE-------------------EEHHHHTTCCCS--
T ss_pred ccccC-CEEECCCCCHHHHHHHHHHcCC--cEEEEEecCCCCEEEEE-------------------EEehHhhhhccC--
Confidence 46677 8999999999999999999999 99999998 8999999 667776531000
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC-CceEeCCCCcHH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS-EAILCHPWSSLM 354 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~-~vvt~~~~~sl~ 354 (412)
..++.++|++ +++++++++++.
T Consensus 174 ---------------------------------------------------------~~~V~~vM~~~~~vtv~~~~~l~ 196 (511)
T 3usb_A 174 ---------------------------------------------------------SIKISDVMTKEQLITAPVGTTLS 196 (511)
T ss_dssp ---------------------------------------------------------SSBHHHHCCCCCCCCEETTCCHH
T ss_pred ---------------------------------------------------------CCcHHHhcccCCCEEECCCCCHH
Confidence 0113457877 999999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++|.+++++++||||++|+++|+||+.||++.+..
T Consensus 197 eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 197 EAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp HHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhc
Confidence 99999999999999999999999999999999998754
No 103
>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1
Probab=99.39 E-value=9.8e-13 Score=127.36 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=104.5
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV 80 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv 80 (412)
...+++++|. ++++++++ +.|+.+|++.|.++ ++.++||+|. +++++|+|
T Consensus 135 ~~~~v~~iM~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~~~~~~pVvd~----------------------~~~lvGiv 189 (286)
T 2oux_A 135 EDETAGAIMT--TEFVSIVA-NQTVRSAMYVLKNQADMAETIYYVYVVDQ----------------------ENHLVGVI 189 (286)
T ss_dssp CTTBHHHHCB--SCCCEECS-SSBHHHHHHHHHHHCSSCSCCSEEEEECT----------------------TCBEEEEE
T ss_pred ChHHHHHhCC--CCceEECC-CCcHHHHHHHHHHcccCccceeEEEEEcC----------------------CCeEEEEE
Confidence 4678999995 57999999 99999999999998 8899999995 36899999
Q ss_pred ehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178 81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST 159 (412)
Q Consensus 81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~ 159 (412)
+..|++... ...+|+++|... ++++++++++.+|++.|. ++++++||+++
T Consensus 190 t~~dll~~~------------~~~~v~~im~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-------------- 240 (286)
T 2oux_A 190 SLRDLIVND------------DDTLIADILNER---VISVHVGDDQEDVAQTIRDYDFLAVPVTDY-------------- 240 (286)
T ss_dssp EHHHHTTSC------------TTSBHHHHSBSC---CCCEETTSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred EHHHHHcCC------------CCCcHHHHcCCC---CeeecCCCCHHHHHHHHHHcCCcEEEEEcC--------------
Confidence 999987641 246899999755 889999999999999999 89999999863
Q ss_pred cCCCCeeeeecHHHHHHHHHHc
Q 015178 160 FHNDSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 160 ~~~~~~v~iITq~DIv~~l~~~ 181 (412)
+|+++|+||..||++.+.+.
T Consensus 241 --~g~lvGiIT~~Dil~~i~~e 260 (286)
T 2oux_A 241 --DDHLLGIVTVDDIIDVIDDE 260 (286)
T ss_dssp --TCBEEEEEEHHHHHHHHHHH
T ss_pred --CCeEEEEEEHHHHHHHHHHH
Confidence 36799999999999998763
No 104
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.38 E-value=1.5e-12 Score=135.19 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEc--CCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVD--EEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd--~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
+|+.+ ++++.+++++.+|+++|.++++ +++||+| ++++++|+ +|.+|++...+.
T Consensus 95 im~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~lvGi-------------------vt~~Dl~~~~~~-- 150 (491)
T 1zfj_A 95 GVIID-PFFLTPEHKVSEAEELMQRYRI--SGVPIVETLANRKLVGI-------------------ITNRDMRFISDY-- 150 (491)
T ss_dssp TTSSS-CCCBCSSSBHHHHHHHHHHTTC--SEEEEESCTTTCBEEEE-------------------EEHHHHHHCSCS--
T ss_pred cCcCC-CeEECCCCcHHHHHHHHHHcCC--CEEEEEEeCCCCEEEEE-------------------EEHHHHhhhccC--
Confidence 67777 9999999999999999999999 9999999 78999999 667777542100
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC-CceEeCCCCcHH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS-EAILCHPWSSLM 354 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~-~vvt~~~~~sl~ 354 (412)
..++.++|++ +++++++++++.
T Consensus 151 ---------------------------------------------------------~~~v~~im~~~~~~~v~~~~~l~ 173 (491)
T 1zfj_A 151 ---------------------------------------------------------NAPISEHMTSEHLVTAAVGTDLE 173 (491)
T ss_dssp ---------------------------------------------------------SSBTTTSCCCSCCCCEETTCCHH
T ss_pred ---------------------------------------------------------CCcHHHHcCCCCCEEECCCCCHH
Confidence 0123567887 899999999999
Q ss_pred HHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 355 AVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 355 ~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++|.+++++++||||++|+++|+||+.||++.+.+
T Consensus 174 ~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 174 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence 99999999999999999999999999999999998873
No 105
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=99.38 E-value=4.8e-14 Score=145.40 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
+..+ ++++.|+.++.||+++|.++++ +++||+|+ +|+|+|| +|.+|++. .+.
T Consensus 144 ~i~d-Pvtl~P~~Tv~da~~l~~~~~i--sgvpVvd~g~~~~kLvGI-------------------vT~RD~rf-~d~-- 198 (556)
T 4af0_A 144 FITD-PLCLGPDATVGDVLEIKAKFGF--CGVPITETGEPDSKLLGI-------------------VTGRDVQF-QDA-- 198 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCC-CeEcCCCCCHHHHHHHHHHhCC--CccccccccCcCCEEEEE-------------------Eecccccc-ccc--
Confidence 4456 8999999999999999999999 99999987 5799999 55666532 100
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMA 355 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~ 355 (412)
..++.++|+++++|++++.++.+
T Consensus 199 ---------------------------------------------------------~~~V~evMT~~lvt~~~~~~lee 221 (556)
T 4af0_A 199 ---------------------------------------------------------ETPIKSVMTTEVVTGSSPITLEK 221 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------ceEhhhhcccceEEecCCCCHHH
Confidence 00134679999999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
+.+.|.++++.+|||||++++|+|+||++||++.-
T Consensus 222 A~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 222 ANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence 99999999999999999999999999999998763
No 106
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=99.37 E-value=1e-12 Score=137.72 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=106.7
Q ss_pred ccccchhccccCCCCeEEEecCC-chHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehH
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSS-STVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMV 83 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~-~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~ 83 (412)
|...+|+|+|. ++++++++ + +|+.+|+++|.+++++++||+|.+ +++++||||..
T Consensus 381 l~~~~V~diM~--~~~vtv~~-~~~tv~ea~~~m~~~~~~~lpVvd~~---------------------~g~lvGiVt~~ 436 (527)
T 3pc3_A 381 WWSLAIAELEL--PAPPVILK-SDATVGEAIALMKKHRVDQLPVVDQD---------------------DGSVLGVVGQE 436 (527)
T ss_dssp TTTSBGGGGCC--CCCSCCEE-TTCBHHHHHHHHHHHTCSEEEEECTT---------------------TCCEEEEEEHH
T ss_pred ccCCcHHHhCc--CCCeEEcC-CCCcHHHHHHHHHHcCCCeEEEEECC---------------------CCEEEEEEEHH
Confidence 45688999995 67999999 8 999999999999999999999921 36899999999
Q ss_pred HHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCC
Q 015178 84 DIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHN 162 (412)
Q Consensus 84 Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~ 162 (412)
||++.+..... ....+|+++|... +++++++++|.+++++|. +++ +||++++.. ..
T Consensus 437 Dll~~l~~~~~------~~~~~V~~im~~~---~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~------------~~ 493 (527)
T 3pc3_A 437 TLITQIVSMNR------QQSDPAIKALNKR---VIRLNESEILGKLARVLEVDPS--VLILGKNPA------------GK 493 (527)
T ss_dssp HHHHHHHHHCC------CTTSBGGGGEETT---CCEEETTSBHHHHHHHHTTCSE--EEEEEECSS------------SC
T ss_pred HHHHHHHhccC------cCCCcHHHHhcCC---CeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc------------cC
Confidence 99998875321 2357899999865 899999999999999998 554 577754210 13
Q ss_pred CCeeeeecHHHHHHHHHHc
Q 015178 163 DSEYCWLTQEDLIRYFLNC 181 (412)
Q Consensus 163 ~~~v~iITq~DIv~~l~~~ 181 (412)
++++||||+.||++++.++
T Consensus 494 g~lvGIVT~~Dll~~l~~~ 512 (527)
T 3pc3_A 494 VELKALATKLDVTTFIAAG 512 (527)
T ss_dssp EEEEEEEEHHHHHHHHHTC
T ss_pred CeEEEEEEHHHHHHHHHhc
Confidence 6789999999999999864
No 107
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A
Probab=99.35 E-value=2.6e-12 Score=123.63 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=102.9
Q ss_pred ccccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEE
Q 015178 5 LLSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGK 79 (412)
Q Consensus 5 ~~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGi 79 (412)
+...+++++|. ++++++++ +.|+.+|++.|.++ ++.++||+|. +++++|+
T Consensus 132 ~~~~~v~~iM~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~----------------------~~~lvGi 186 (278)
T 2yvy_A 132 YEEDEAGGLMT--PEYVAVRE-GMTVEEVLRFLRRAAPDAETIYYIYVVDE----------------------KGRLKGV 186 (278)
T ss_dssp SCTTBGGGTCB--SCCCEECT-TSBHHHHHHHHHHHTTTCSCSSEEEEECT----------------------TCBEEEE
T ss_pred CCcchHHhhcC--CCceEECC-CCcHHHHHHHHHHccCCccceeEEEEECC----------------------CCCEEEE
Confidence 34678999995 57999999 99999999999997 8999999995 3689999
Q ss_pred EehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCc
Q 015178 80 VCMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKS 158 (412)
Q Consensus 80 vt~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~ 158 (412)
|+..|++... ...+|+++|... ++++++++++.+|++.|. ++++++||+++
T Consensus 187 vt~~dll~~~------------~~~~v~~im~~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~------------- 238 (278)
T 2yvy_A 187 LSLRDLIVAD------------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDE------------- 238 (278)
T ss_dssp EEHHHHHHSC------------TTCBSTTTSBSS---CCCEETTSBHHHHHHHHHHHTCSEEEEECT-------------
T ss_pred EEHHHHhcCC------------CCCcHHHHhCCC---CeEEeCCCCHHHHHHHHHhcCCCEEEEEeC-------------
Confidence 9999998631 146799999755 889999999999999999 89999999863
Q ss_pred ccCCCCeeeeecHHHHHHHHHH
Q 015178 159 TFHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 159 ~~~~~~~v~iITq~DIv~~l~~ 180 (412)
+|+++|+||..||++.+.+
T Consensus 239 ---~g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 239 ---EGRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp ---TSBEEEEEEHHHHHHHC--
T ss_pred ---CCeEEEEEEHHHHHHHHHH
Confidence 3679999999999998764
No 108
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.35 E-value=7.5e-14 Score=145.68 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=0.4
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCC---CcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCC
Q 015178 199 VDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEE---GRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGR 275 (412)
Q Consensus 199 ~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~---g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~ 275 (412)
|+++ ++++.+++++.+|+++|.++++ +++||+|++ |+++|+|| .+|++....
T Consensus 103 M~~~-~~~v~~~~tv~eal~~m~~~~~--s~~pVvd~~~~~g~lvGiVt-------------------~~Dl~~~~~--- 157 (503)
T 1me8_A 103 FVVS-DSNVKPDQTFADVLAISQRTTH--NTVAVTDDGTPHGVLLGLVT-------------------QRDYPIDLT--- 157 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccC-CeEECCCCcHHHHHHHHHHcCc--eEEEEEECCCcCCeEEEEEE-------------------HHHHHhhhc---
Confidence 7777 9999999999999999999999 999999987 89999954 555543100
Q ss_pred CCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCC--ceEeCCCCcH
Q 015178 276 PPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSE--AILCHPWSSL 353 (412)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~--vvt~~~~~sl 353 (412)
.. ..++.++|+++ ++++++++++
T Consensus 158 -----------~~--------------------------------------------~~~V~diM~~~~~~~tv~~~~sl 182 (503)
T 1me8_A 158 -----------QT--------------------------------------------ETKVSDMMTPFSKLVTAHQDTKL 182 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------cc--------------------------------------------cCcHHHHhCCCCCCEEEcCCCcH
Confidence 00 00134567776 9999999999
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHHH
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRDR 393 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~~ 393 (412)
.+++++|.+++++++||||++|+++||||+.||++++...
T Consensus 183 ~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 183 SEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp ---------------------------------------C
T ss_pred HHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcc
Confidence 9999999999999999999999999999999999988753
No 109
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=99.33 E-value=3.2e-13 Score=140.63 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=82.9
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|..+ ++++.+++++.+|+++|.++++ +++||+|++++++|+ +|.+|++...+.
T Consensus 94 ~m~~d-~v~v~~~~tv~ea~~~m~~~~~--s~~PVvd~~~~lvGi-------------------Vt~rDL~~~~~~---- 147 (496)
T 4fxs_A 94 GVVTH-PVTVRPEQTIADVMELTHYHGF--AGFPVVTENNELVGI-------------------ITGRDVRFVTDL---- 147 (496)
T ss_dssp --CBC-CCCBCSSSBHHHHHHHHTSSCC--CEEEEECSSSBEEEE-------------------EEHHHHTTCCCT----
T ss_pred ccccC-ceEECCCCCHHHHHHHHHHcCC--cEEEEEccCCEEEEE-------------------EEHHHHhhcccC----
Confidence 57777 9999999999999999999999 999999999999999 567776521000
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-C-CceEeCCCCcHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-S-EAILCHPWSSLMA 355 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~-~vvt~~~~~sl~~ 355 (412)
..++.++|+ + +++++++++++.+
T Consensus 148 -------------------------------------------------------~~~v~diM~p~~~~vtv~~~~~l~e 172 (496)
T 4fxs_A 148 -------------------------------------------------------TKSVAAVMTPKERLATVKEGATGAE 172 (496)
T ss_dssp -------------------------------------------------------TSBGGGTSEEGGGCCEEECC----C
T ss_pred -------------------------------------------------------CCcHHHHhcCCCCCEEECCCCCHHH
Confidence 011346777 4 6999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHH
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVI 390 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l 390 (412)
+++.|.+++++++||||++|+++|+||+.||+++.
T Consensus 173 a~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~ 207 (496)
T 4fxs_A 173 VQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE 207 (496)
T ss_dssp GGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred HHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence 99999999999999999999999999999999874
No 110
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=99.32 E-value=1.4e-13 Score=143.23 Aligned_cols=114 Identities=26% Similarity=0.306 Sum_probs=5.5
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|.++ ++++++++++.+|+++|.++++ +++||+|++|+++|+|| .+|++...+
T Consensus 100 iM~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~lvGivt-------------------~~Dl~~~~~----- 152 (494)
T 1vrd_A 100 GIIYD-PITVTPDMTVKEAIDLMAEYKI--GGLPVVDEEGRLVGLLT-------------------NRDVRFEKN----- 152 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccC-CeEECCCCCHHHHHHHHHHcCc--eEEEEEcCCCEEEEEEE-------------------HHHHHhhcC-----
Confidence 57777 9999999999999999999999 99999998899999954 555442100
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccC--CceEeCCCCcHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRS--EAILCHPWSSLMA 355 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~ 355 (412)
. ..++.++|++ +++++++++++.+
T Consensus 153 ----------~--------------------------------------------~~~v~~im~~~~~~~~v~~~~~l~e 178 (494)
T 1vrd_A 153 ----------L--------------------------------------------SKKIKDLMTPREKLIVAPPDISLEK 178 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------C--------------------------------------------CCcHHHHhCCCCCCeEECCCCCHHH
Confidence 0 0012456777 8999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
++++|.+++++++||||++|+++|+||+.||++++..
T Consensus 179 a~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~ 215 (494)
T 1vrd_A 179 AKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH 215 (494)
T ss_dssp ------------------------------CHHHHTC
T ss_pred HHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence 9999999999999999999999999999999998754
No 111
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=99.30 E-value=2.2e-13 Score=141.61 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|..+ ++++.+++++.+|+++|.++++ +++||+| +++++|+ +|.+|++...+
T Consensus 93 ~m~~~-~v~v~~~~tv~ea~~~m~~~~~--s~~pVvd-~g~lvGI-------------------Vt~rDl~~~~~----- 144 (490)
T 4avf_A 93 AIVRD-PVTVTPSTKIIELLQMAREYGF--SGFPVVE-QGELVGI-------------------VTGRDLRVKPN----- 144 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccC-ceEeCCCCcHHHHHHHHHHhCC--CEEEEEE-CCEEEEE-------------------EEhHHhhhccc-----
Confidence 56677 9999999999999999999999 9999999 7899999 55555532100
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCcccccccc-C-CceEeCCCCcHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHR-S-EAILCHPWSSLMA 355 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~-~-~vvt~~~~~sl~~ 355 (412)
. ..++.++|+ + +++++++++++.+
T Consensus 145 ----------------------~--------------------------------~~~V~~vMtp~~~~vtv~~~~~l~e 170 (490)
T 4avf_A 145 ----------------------A--------------------------------GDTVAAIMTPKDKLVTAREGTPLEE 170 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------c--------------------------------CCcHHHHhccCCCCEEECCCCcHHH
Confidence 0 001345677 4 6999999999999
Q ss_pred HHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 356 VIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 356 v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
++++|.+++++++||||++|+++|+||+.||+++..
T Consensus 171 a~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 171 MKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence 999999999999999999999999999999999863
No 112
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=99.21 E-value=3.2e-13 Score=141.25 Aligned_cols=132 Identities=10% Similarity=0.027 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC---CCcEeeeecCC
Q 015178 170 TQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE---EGRLVGDISPF 246 (412)
Q Consensus 170 Tq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~---~g~lvG~IS~~ 246 (412)
|..++.+++..- +++++ +|.++ ++++.+++++.+|+++|.++++ +++||+|+ +|+++|+||..
T Consensus 96 t~e~~~~~v~~v---------~~~~~--im~~~-~~~v~~~~tv~ea~~~m~~~~~--~~~pVvd~~~~~~~lvGiVt~~ 161 (514)
T 1jcn_A 96 TPEFQANEVRKV---------KNFEQ--GFITD-PVVLSPSHTVGDVLEAKMRHGF--SGIPITETGTMGSKLVGIVTSR 161 (514)
T ss_dssp CHHHHHHHHHHH---------HTCCT--TSCSS-CCCCCC-------------------CEESCC--------CCEECTT
T ss_pred CHHHHHHHHHhh---------hhhhh--ccccC-CEEECCCCCHHHHHHHHHhcCC--CEEEEEeCCCcCCEEEEEEEHH
Confidence 556666665431 12332 57777 8899999999999999999999 99999998 58999996655
Q ss_pred ccCCcchhHHHhhhhcCHhhhhhhhcCCCCCchhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCcccccccc
Q 015178 247 SFNSCDETVAAAMVTLSAGDLMAYMDCGRPPKDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSA 326 (412)
Q Consensus 247 dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 326 (412)
||.+ .... . .
T Consensus 162 Dl~~-------------------~~~~-------------~------------~-------------------------- 171 (514)
T 1jcn_A 162 DIDF-------------------LAEK-------------D------------H-------------------------- 171 (514)
T ss_dssp TTC-----------------------------------------------------------------------------
T ss_pred HHHh-------------------hhhc-------------c------------C--------------------------
Confidence 5543 1000 0 0
Q ss_pred ccccccCccccccccC--CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 327 QSVRSRGYSARVVHRS--EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 327 ~~~~~~~~~a~~~m~~--~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
..++.++|++ +++++++++++.+++++|.+++++++||||++|+++|+||++||++++.
T Consensus 172 ------~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~ 232 (514)
T 1jcn_A 172 ------TTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD 232 (514)
T ss_dssp ---------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred ------CCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence 0012356777 8999999999999999999999999999999999999999999987654
No 113
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=99.21 E-value=4.4e-11 Score=123.81 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=103.8
Q ss_pred cccchhccccCCCCeEEEecCCchHHHHHHHHHhc-----CCceEEEeecCCCCCcccccccccccccccCcCCeEEEEE
Q 015178 6 LSVGVSDLCIGKPALRSLSVSSSTVADALSALKRL-----NESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKV 80 (412)
Q Consensus 6 ~~~~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~-----~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGiv 80 (412)
...+++++|. ++++++++ +.|+.+|++.|.++ ++.++||+|. +++++|+|
T Consensus 153 ~~~~v~~iM~--~~~v~v~~-~~tv~ea~~~~~~~~~~~~~~~~ipVvd~----------------------~~~lvGiV 207 (473)
T 2zy9_A 153 EEDEAGGLMT--PEYVAVRE-GMTVEEVLRFLRRAAPDAETIYYIYVVDE----------------------KGRLKGVL 207 (473)
T ss_dssp CTTBSTTTCB--SCEEEECT-TCBHHHHHHHHHHHGGGCSEEEEEEEECT----------------------TSBEEEEE
T ss_pred CCCCHHHhCC--CCceEeCC-CCcHHHHHHHHHhccCCcCceeEEEEECC----------------------CCcEEEEE
Confidence 4678999995 58999999 99999999999996 6899999995 36899999
Q ss_pred ehHHHHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcc
Q 015178 81 CMVDIISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKST 159 (412)
Q Consensus 81 t~~Dil~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~ 159 (412)
+..|++.. . .+.+|+++|... ++++++++++.+|++.|. ++++++||+++
T Consensus 208 t~~Dll~~--~----------~~~~v~dim~~~---~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe-------------- 258 (473)
T 2zy9_A 208 SLRDLIVA--D----------PRTRVAEIMNPK---VVYVRTDTDQEEVARLMADYDFTVLPVVDE-------------- 258 (473)
T ss_dssp EHHHHHHS--C----------TTSBGGGTSBSS---CCCEESSSBHHHHHHHHHHHTCSEEEEECT--------------
T ss_pred EHHHHhcC--C----------CCCcHHHHhCCC---CeEEeCCCcHHHHHHHHHhcCCcEEEEEcC--------------
Confidence 99999863 1 146899999755 899999999999999999 89999999963
Q ss_pred cCCCCeeeeecHHHHHHHHHH
Q 015178 160 FHNDSEYCWLTQEDLIRYFLN 180 (412)
Q Consensus 160 ~~~~~~v~iITq~DIv~~l~~ 180 (412)
+++.+|+||..|+++.+.+
T Consensus 259 --~g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 259 --EGRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp --TSBEEEEEEHHHHHHHHHH
T ss_pred --CCEEEEEEehHhhHHHHHH
Confidence 3679999999999998865
No 114
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}
Probab=99.19 E-value=2e-11 Score=130.62 Aligned_cols=123 Identities=11% Similarity=0.054 Sum_probs=95.3
Q ss_pred CCchhhhcc--CCCCceEecCCCCcHHHHHHHHh--cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHH
Q 015178 103 QDPVSVLLP--EASGVIRHLEPSASLLEAVDLLL--GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYF 178 (412)
Q Consensus 103 ~~~V~dvm~--~~~~~~~tV~~~~sL~~ai~lm~--~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l 178 (412)
+.+|+++|. .+ +.++++++++.++.+.|. ++.+++||+++ +++++|+||..|+++.+
T Consensus 452 ~~~V~diM~p~~~---v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~----------------~~~lvGiVt~~DL~~~l 512 (632)
T 3org_A 452 EMTAREIMHPIEG---EPHLFPDSEPQHIKGILEKFPNRLVFPVIDA----------------NGYLLGAISRKEIVDRL 512 (632)
T ss_dssp TSBHHHHCBCTTT---SCCBCSSSCHHHHHHHHHHSTTCCEECBBCT----------------TCBBCCEESHHHHTTTT
T ss_pred cCcHHHHhhcCCC---ceEecCCCcHHHHHHHHHhcCCcceEEEEec----------------CCeEEEEEEHHHHHHHH
Confidence 467999998 44 889999999999999998 57889999864 25688999999999876
Q ss_pred HHccCc----------------------CCCCCC---------------------CCcccccCCCCCcEEEEeCCCcHHH
Q 015178 179 LNCIGL----------------------LSPTPN---------------------QPINSLNIVDDAGIFAIQYDEPAAF 215 (412)
Q Consensus 179 ~~~~~~----------------------l~~l~~---------------------~~i~~L~i~~~~~v~tv~~~~~~~~ 215 (412)
.+.... +..+.. .++++ +|+++ ++++++++++.+
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~--iMt~~-pitV~~~~~l~e 589 (632)
T 3org_A 513 QHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVV--PCDVS-PIVVTSYSLVRQ 589 (632)
T ss_dssp TTC-------------------------------------------------------CC--SCCCC-CCEEETTCBHHH
T ss_pred HHHhhhcccccccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccch--hhcCC-CceecCCCcHHH
Confidence 432100 000000 01333 79999 999999999999
Q ss_pred HHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCC
Q 015178 216 AIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNS 250 (412)
Q Consensus 216 a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~ 250 (412)
|+++|.++++ +.+||+ ++|+++|+||.+||.+
T Consensus 590 a~~~M~~~~i--~~lpVv-e~G~lvGIVT~~Dll~ 621 (632)
T 3org_A 590 LHFLFVMLMP--SMIYVT-ERGKLVGIVEREDVAY 621 (632)
T ss_dssp HHHHHHHTCC--SEEEEE-ETTEEEEEEEGGGTEE
T ss_pred HHHHHHhcCC--CEEEEE-ECCEEEEEEehhhHHH
Confidence 9999999999 999999 6799999977666654
No 115
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=99.18 E-value=2.6e-10 Score=119.11 Aligned_cols=157 Identities=14% Similarity=0.045 Sum_probs=116.3
Q ss_pred CCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCC
Q 015178 18 PALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLN 97 (412)
Q Consensus 18 ~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~ 97 (412)
++++++++ ++|+.+|+++|.+++++++||+|... +++++|||+.+|+.. .
T Consensus 121 ~d~v~l~~-~~tv~ea~~~m~~~~~s~~pVvd~g~--------------------~~~lvGiVt~rDl~~---~------ 170 (511)
T 3usb_A 121 SDPFFLTP-EHQVYDAEHLMGKYRISGVPVVNNLD--------------------ERKLVGIITNRDMRF---I------ 170 (511)
T ss_dssp SSCCCBCT-TSBHHHHHHHHHHHCCSEEEEESCTT--------------------TCBEEEEEEHHHHTT---C------
T ss_pred cCCEEECC-CCCHHHHHHHHHHcCCcEEEEEecCC--------------------CCEEEEEEEehHhhh---h------
Confidence 46889999 99999999999999999999999510 268999999999854 1
Q ss_pred cccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHH
Q 015178 98 PESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIR 176 (412)
Q Consensus 98 ~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~ 176 (412)
.....+|+++|+. .+++++++++++.+++++|. ++++++||+++ +++++|+||..||++
T Consensus 171 --~~~~~~V~~vM~~--~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe----------------~g~l~GiIT~~Dil~ 230 (511)
T 3usb_A 171 --QDYSIKISDVMTK--EQLITAPVGTTLSEAEKILQKYKIEKLPLVDN----------------NGVLQGLITIKDIEK 230 (511)
T ss_dssp --CCSSSBHHHHCCC--CCCCCEETTCCHHHHHHHHHHHTCSEEEEECT----------------TSBEEEEEEHHHHHH
T ss_pred --ccCCCcHHHhccc--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC----------------CCCEeeeccHHHHHH
Confidence 1135789999985 23899999999999999999 99999999974 367899999999999
Q ss_pred HHHHccCcCCCCCCCCcccccCCCCCc-EEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCC
Q 015178 177 YFLNCIGLLSPTPNQPINSLNIVDDAG-IFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEG 237 (412)
Q Consensus 177 ~l~~~~~~l~~l~~~~i~~L~i~~~~~-v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g 237 (412)
.+..... . +. .+.+-. -..+.......+.++.+.+.++ ..+.|-..++
T Consensus 231 ~~~~p~a-~-----~D-----~~~rl~V~aavg~~~d~~era~aLveaGv--d~I~Id~a~g 279 (511)
T 3usb_A 231 VIEFPNS-A-----KD-----KQGRLLVGAAVGVTADAMTRIDALVKASV--DAIVLDTAHG 279 (511)
T ss_dssp HHHCTTC-C-----BC-----TTSCBCCEEEECSSTTHHHHHHHHHHTTC--SEEEEECSCT
T ss_pred hhhcccc-h-----hh-----hccceeeeeeeeeccchHHHHHHHHhhcc--ceEEeccccc
Confidence 8853111 0 00 111110 2334434445666777788888 7776654443
No 116
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=99.16 E-value=7.1e-11 Score=90.52 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=55.3
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++|+.+|+++|.+++++++||.| +++++||||.+||++.+...+
T Consensus 1 k~vtv~p-~~tv~ea~~~M~~~~i~~~~V~d-----------------------~~~lvGIvT~~Di~~~~~~~~----- 51 (70)
T 3ghd_A 1 KAIVVQP-KDTVDRVAKILSRNKAGSAVVME-----------------------GDEILGVVTERDILDKVVAKG----- 51 (70)
T ss_dssp CEEEECT-TCBHHHHHHHHHHTTCSEEEEEE-----------------------TTEEEEEEEHHHHHHHTTTTT-----
T ss_pred CCEEECC-CCcHHHHHHHHHHcCCCEEEEEE-----------------------CCEEEEEEEHHHHHHHHHhcC-----
Confidence 4799999 99999999999999999999998 368999999999998765421
Q ss_pred ccccCCchhhhccCC
Q 015178 99 ESALQDPVSVLLPEA 113 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~ 113 (412)
....+.||+++|+.+
T Consensus 52 ~~~~~~~V~~iMt~~ 66 (70)
T 3ghd_A 52 KNPKEVKVEEIMTKN 66 (70)
T ss_dssp CCGGGCBGGGTCEEC
T ss_pred CCcccCCHHHhcCCC
Confidence 122357899999855
No 117
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=99.15 E-value=1.4e-11 Score=128.41 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=26.3
Q ss_pred cccchhcc-ccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHH
Q 015178 6 LSVGVSDL-CIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVD 84 (412)
Q Consensus 6 ~~~~v~dl-~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~D 84 (412)
...+..++ |. ++++++++ ++|+.+|+++|.+++++++||+|.+.. .++++|||+..|
T Consensus 94 ~~V~~~e~gM~--~~~~~v~~-~~tv~eal~~m~~~~~s~~pVvd~~~~-------------------~g~lvGiVt~~D 151 (503)
T 1me8_A 94 HAVKNFKAGFV--VSDSNVKP-DQTFADVLAISQRTTHNTVAVTDDGTP-------------------HGVLLGLVTQRD 151 (503)
T ss_dssp HHHHTTTC------------------------------------------------------------------------
T ss_pred hhhhhcccCcc--cCCeEECC-CCcHHHHHHHHHHcCceEEEEEECCCc-------------------CCeEEEEEEHHH
Confidence 33445555 64 57999999 999999999999999999999995310 168999999999
Q ss_pred HHHHhhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCC
Q 015178 85 IISFLCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHND 163 (412)
Q Consensus 85 il~~l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~ 163 (412)
|... . .....+|+++|... ..++++++++++.+|+++|. ++++++||+++ ++
T Consensus 152 l~~~--~--------~~~~~~V~diM~~~-~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe----------------~g 204 (503)
T 1me8_A 152 YPID--L--------TQTETKVSDMMTPF-SKLVTAHQDTKLSEANKIIWEKKLNALPIIDD----------------DQ 204 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhh--h--------ccccCcHHHHhCCC-CCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcC----------------CC
Confidence 9864 1 11356899999732 23789999999999999999 89999999864 35
Q ss_pred CeeeeecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCc
Q 015178 164 SEYCWLTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGR 238 (412)
Q Consensus 164 ~~v~iITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~ 238 (412)
+++|+||..||++.+...... ...... ++. -..+.. ....+.++.|.+.++ ..+.|--.+|.
T Consensus 205 ~lvGiIT~~Dil~~~~~~~~~-----~d~~~~--l~v---~a~v~~-~~~~e~~~~l~e~gv--~~l~Vd~~~g~ 266 (503)
T 1me8_A 205 HLRYIVFRKDYDRSQVCHNEL-----VDSQKR--YLV---GAGINT-RDFRERVPALVEAGA--DVLCIDSSDGF 266 (503)
T ss_dssp -----------------CCCC-----BCTTSC--BCC---EEEECS-SSHHHHHHHHHHHTC--SEEEECCSCCC
T ss_pred eEEEEEEecHHHHhhhcccch-----hccccc--ccc---ccccCc-hhHHHHHHHHHhhhc--cceEEecccCc
Confidence 788999999999987542111 111111 121 133445 666778999999999 77666333343
No 118
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1
Probab=99.10 E-value=1e-09 Score=113.89 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=100.7
Q ss_pred chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178 9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF 88 (412)
Q Consensus 9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~ 88 (412)
.+.++|. ++++++++ ++|+.+|++.|.+++++++||+|... +++++|+|+..|++..
T Consensus 91 ~~~~im~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~~~--------------------~~~lvGivt~~Dl~~~ 147 (491)
T 1zfj_A 91 RSENGVI--IDPFFLTP-EHKVSEAEELMQRYRISGVPIVETLA--------------------NRKLVGIITNRDMRFI 147 (491)
T ss_dssp HHTTTTS--SSCCCBCS-SSBHHHHHHHHHHTTCSEEEEESCTT--------------------TCBEEEEEEHHHHHHC
T ss_pred hHHhcCc--CCCeEECC-CCcHHHHHHHHHHcCCCEEEEEEeCC--------------------CCEEEEEEEHHHHhhh
Confidence 3578885 57899999 99999999999999999999998200 3689999999999853
Q ss_pred hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178 89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC 167 (412)
Q Consensus 89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (412)
. ..+.+++++|.. .+++++++++++.++++.|. ++++++||+++ .++++|
T Consensus 148 -~----------~~~~~v~~im~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~----------------~g~lvG 198 (491)
T 1zfj_A 148 -S----------DYNAPISEHMTS--EHLVTAAVGTDLETAERILHEHRIEKLPLVDN----------------SGRLSG 198 (491)
T ss_dssp -S----------CSSSBTTTSCCC--SCCCCEETTCCHHHHHHHHHHTTCSEEEEECT----------------TSBEEE
T ss_pred -c----------cCCCcHHHHcCC--CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----------------CCcEEE
Confidence 1 125789999974 13789999999999999999 99999999863 367899
Q ss_pred eecHHHHHHHHHH
Q 015178 168 WLTQEDLIRYFLN 180 (412)
Q Consensus 168 iITq~DIv~~l~~ 180 (412)
+||..||++.+.+
T Consensus 199 ivt~~Dil~~~~~ 211 (491)
T 1zfj_A 199 LITIKDIEKVIEF 211 (491)
T ss_dssp EEEHHHHHHHHHC
T ss_pred EEEHHHHHHHHhc
Confidence 9999999999864
No 119
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=99.09 E-value=9.5e-12 Score=129.22 Aligned_cols=110 Identities=20% Similarity=0.334 Sum_probs=0.4
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCcchhHHHhhhhcCHhhhhhhhcCCCCC
Q 015178 198 IVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSCDETVAAAMVTLSAGDLMAYMDCGRPP 277 (412)
Q Consensus 198 i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~~~~~~~~~~~ls~~Dl~~~~~~~~~~ 277 (412)
+|..+ ++++.+++++.+++++|.++++ +++||+|+ ++++|+ ++.+|++. +.
T Consensus 98 ~m~~~-~~~v~~~~tv~ea~~~~~~~~~--~~~pVvd~-~~lvGi-------------------vt~~Dl~~--~~---- 148 (486)
T 2cu0_A 98 LIVED-VITIAPDETVDFALFLMEKHGI--DGLPVVED-EKVVGI-------------------ITKKDIAA--RE---- 148 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccC-ceEECCCCCHHHHHHHHHHcCC--cEEEEEEC-CEEEEE-------------------EEHHHhcc--CC----
Confidence 46677 9999999999999999999998 99999998 899999 45555532 00
Q ss_pred chhHHHHHHHhhhhhhhHHHHhhhhhhcccCCCCCCCCCCCccccccccccccccCccccccccCCceEeCCCCcHHHHH
Q 015178 278 KDLVRLVKQRLEEKSMVGFLELMEDDLEISSGSCPDSSSSDDESSTGSAQSVRSRGYSARVVHRSEAILCHPWSSLMAVI 357 (412)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~a~~~m~~~vvt~~~~~sl~~v~ 357 (412)
+ .++.++|+++++++++++++.+++
T Consensus 149 --------------------~-----------------------------------~~v~~im~~~~~~v~~~~~l~eal 173 (486)
T 2cu0_A 149 --------------------G-----------------------------------KLVKELMTKEVITVPESIEVEEAL 173 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------C-----------------------------------CCHHHHccCCCeEECCcCcHHHHH
Confidence 0 002346777899999999999999
Q ss_pred HHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHH
Q 015178 358 MQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIR 391 (412)
Q Consensus 358 ~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~ 391 (412)
+.|.+++++++||||++|+++|+||+.||++.+.
T Consensus 174 ~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 174 KIMIENRIDRLPVVDERGKLVGLITMSDLVARKK 207 (486)
T ss_dssp ---------------------------------C
T ss_pred HHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence 9999999999999999999999999999999853
No 120
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=98.99 E-value=1.9e-10 Score=119.47 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=6.4
Q ss_pred chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178 9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF 88 (412)
Q Consensus 9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~ 88 (412)
++.++|. ++++++++ ++|+.+|++.|.+++++++||+|. +++++|+||..||...
T Consensus 96 ~~~~iM~--~~~~~v~~-~~tv~ea~~~m~~~~~~~~pVvd~----------------------~~~lvGivt~~Dl~~~ 150 (494)
T 1vrd_A 96 KTENGII--YDPITVTP-DMTVKEAIDLMAEYKIGGLPVVDE----------------------EGRLVGLLTNRDVRFE 150 (494)
T ss_dssp TC------------------------------------------------------------------------------
T ss_pred hHhhcCc--cCCeEECC-CCCHHHHHHHHHHcCceEEEEEcC----------------------CCEEEEEEEHHHHHhh
Confidence 3677774 57899999 999999999999999999999995 3689999999999852
Q ss_pred hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178 89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC 167 (412)
Q Consensus 89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (412)
. ....+|+++|+.. .+++++++++++.+++++|. ++++++||+++ +++++|
T Consensus 151 --~---------~~~~~v~~im~~~-~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~----------------~g~lvG 202 (494)
T 1vrd_A 151 --K---------NLSKKIKDLMTPR-EKLIVAPPDISLEKAKEILHQHRIEKLPLVSK----------------DNKLVG 202 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --c---------CCCCcHHHHhCCC-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC----------------CCeEEE
Confidence 1 1246899999851 13889999999999999999 89999999864 367889
Q ss_pred eecHHHHHHHHHH
Q 015178 168 WLTQEDLIRYFLN 180 (412)
Q Consensus 168 iITq~DIv~~l~~ 180 (412)
+||..|+++.+..
T Consensus 203 iIt~~Dll~~~~~ 215 (494)
T 1vrd_A 203 LITIKDIMSVIEH 215 (494)
T ss_dssp ------CHHHHTC
T ss_pred EEEHHHHHhhhcc
Confidence 9999999998753
No 121
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=98.97 E-value=3.5e-10 Score=117.70 Aligned_cols=114 Identities=11% Similarity=0.186 Sum_probs=83.2
Q ss_pred hhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCc
Q 015178 106 VSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL 184 (412)
Q Consensus 106 V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~ 184 (412)
+.++|..+ ++++++++++.+++++|. +++.++||+++ +++++||||..|+..
T Consensus 91 ~~~~m~~d---~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~----------------~~~lvGiVt~rDL~~-------- 143 (496)
T 4fxs_A 91 FEAGVVTH---PVTVRPEQTIADVMELTHYHGFAGFPVVTE----------------NNELVGIITGRDVRF-------- 143 (496)
T ss_dssp CCC--CBC---CCCBCSSSBHHHHHHHHTSSCCCEEEEECS----------------SSBEEEEEEHHHHTT--------
T ss_pred cccccccC---ceEECCCCCHHHHHHHHHHcCCcEEEEEcc----------------CCEEEEEEEHHHHhh--------
Confidence 45566644 789999999999999999 89999999863 367899999999951
Q ss_pred CCCCCCCCcccccCCC-CCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCc
Q 015178 185 LSPTPNQPINSLNIVD-DAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSC 251 (412)
Q Consensus 185 l~~l~~~~i~~L~i~~-~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~ 251 (412)
..-...++++ +|+ +++++++++++++.+|+++|.++++ ..+||||++|+++|+||..||.+.
T Consensus 144 -~~~~~~~v~d--iM~p~~~~vtv~~~~~l~ea~~~m~~~~i--~~lpVVDe~G~l~GiIT~~DIl~~ 206 (496)
T 4fxs_A 144 -VTDLTKSVAA--VMTPKERLATVKEGATGAEVQEKMHKARV--EKILVVNDEFQLKGMITAKDFHKA 206 (496)
T ss_dssp -CCCTTSBGGG--TSEEGGGCCEEECC----CGGGTCC---C--CCEEEECTTSBCCEEECCC-----
T ss_pred -cccCCCcHHH--HhcCCCCCEEECCCCCHHHHHHHHHHcCC--CEEEEEcCCCCEEEeehHhHHHHh
Confidence 1123456665 687 4339999999999999999999999 999999999999999999999764
No 122
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=98.94 E-value=1.6e-09 Score=82.88 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=44.7
Q ss_pred ceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 344 AILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 344 vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++|++++.+|+++|.+++++++||+|+ |+++||||.+||++.+..
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence 689999999999999999999999999986 799999999999987653
No 123
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=98.91 E-value=6e-10 Score=115.82 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=2.6
Q ss_pred chhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHH
Q 015178 9 GVSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISF 88 (412)
Q Consensus 9 ~v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~ 88 (412)
++.++|. .+++++++ ++|+.+|+++|.+++++.+||+| + ++++||||.+||...
T Consensus 89 ~~~~~m~--~~~v~v~~-~~tv~ea~~~m~~~~~s~~pVvd-~----------------------g~lvGIVt~rDl~~~ 142 (490)
T 4avf_A 89 KHETAIV--RDPVTVTP-STKIIELLQMAREYGFSGFPVVE-Q----------------------GELVGIVTGRDLRVK 142 (490)
T ss_dssp HCCC----------------------------------------------------------------------------
T ss_pred ccccCcc--cCceEeCC-CCcHHHHHHHHHHhCCCEEEEEE-C----------------------CEEEEEEEhHHhhhc
Confidence 4677775 56889999 99999999999999999999999 2 589999999998421
Q ss_pred hhhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeee
Q 015178 89 LCKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYC 167 (412)
Q Consensus 89 l~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~ 167 (412)
. ....+|+++|+.. .+++++++++++.+|+++|. ++++++||+++ +++++|
T Consensus 143 -~----------~~~~~V~~vMtp~-~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe----------------~g~lvG 194 (490)
T 4avf_A 143 -P----------NAGDTVAAIMTPK-DKLVTAREGTPLEEMKAKLYENRIEKMLVVDE----------------NFYLRG 194 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -c----------ccCCcHHHHhccC-CCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC----------------CCcEEE
Confidence 1 1247899999721 13899999999999999999 99999999864 367889
Q ss_pred eecHHHHHHHHH
Q 015178 168 WLTQEDLIRYFL 179 (412)
Q Consensus 168 iITq~DIv~~l~ 179 (412)
+||..||++...
T Consensus 195 iIT~~Dil~~~~ 206 (490)
T 4avf_A 195 LVTFRDIEKAKT 206 (490)
T ss_dssp ------------
T ss_pred EEehHHhhhhcc
Confidence 999999999764
No 124
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=98.87 E-value=2.1e-10 Score=118.40 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+.+++.+ +.||.+|+++|.+++|+++||++.... .++++||||.+|+ +| ++
T Consensus 147 dPvtl~P-~~Tv~da~~l~~~~~isgvpVvd~g~~-------------------~~kLvGIvT~RD~-rf--~d------ 197 (556)
T 4af0_A 147 DPLCLGP-DATVGDVLEIKAKFGFCGVPITETGEP-------------------DSKLLGIVTGRDV-QF--QD------ 197 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEcCC-CCCHHHHHHHHHHhCCCccccccccCc-------------------CCEEEEEEecccc-cc--cc------
Confidence 4789999 999999999999999999999985321 4799999999995 44 11
Q ss_pred ccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHH
Q 015178 99 ESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRY 177 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~ 177 (412)
..++|+++|+.. ++++.++.++.+|.++|. +++.++||+++ +++++|+||..|+++.
T Consensus 198 ---~~~~V~evMT~~---lvt~~~~~~leeA~~iL~~~kieklpVVd~----------------~g~LvGlIT~kDi~k~ 255 (556)
T 4af0_A 198 ---AETPIKSVMTTE---VVTGSSPITLEKANSLLRETKKGKLPIVDS----------------NGHLVSLVARSDLLKN 255 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cceEhhhhcccc---eEEecCCCCHHHHHHHHHHccccceeEEcc----------------CCcEEEEEEechhhhh
Confidence 247899999965 999999999999999999 89999999874 3678899999999886
Q ss_pred H
Q 015178 178 F 178 (412)
Q Consensus 178 l 178 (412)
-
T Consensus 256 ~ 256 (556)
T 4af0_A 256 Q 256 (556)
T ss_dssp -
T ss_pred h
Confidence 4
No 125
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.80 E-value=8.4e-09 Score=77.38 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=45.9
Q ss_pred CceEeCCCCcHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHHHHHH
Q 015178 343 EAILCHPWSSLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLRVIRD 392 (412)
Q Consensus 343 ~vvt~~~~~sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~~l~~ 392 (412)
+++++++++++.+++++|.+++++++||+|+ |+++|+||.+||++++..
T Consensus 1 ~~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~l~Givt~~dl~~~~~~ 49 (70)
T 3fio_A 1 KAIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVA 49 (70)
T ss_dssp CEEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTT
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence 4689999999999999999999999999998 899999999999998764
No 126
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=98.79 E-value=4.4e-10 Score=117.42 Aligned_cols=118 Identities=11% Similarity=0.078 Sum_probs=66.4
Q ss_pred hhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeeeecHHHHHHHHHHccCc
Q 015178 106 VSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCWLTQEDLIRYFLNCIGL 184 (412)
Q Consensus 106 V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~iITq~DIv~~l~~~~~~ 184 (412)
+.++|... ++++.+++++.+|+++|. ++++++||++++. .+++++|+||..|+.+...
T Consensus 110 ~~~im~~~---~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-------------~~~~lvGiVt~~Dl~~~~~----- 168 (514)
T 1jcn_A 110 FEQGFITD---PVVLSPSHTVGDVLEAKMRHGFSGIPITETGT-------------MGSKLVGIVTSRDIDFLAE----- 168 (514)
T ss_dssp CCTTSCSS---CCCCCC-----------------CEESCC---------------------CCEECTTTTC---------
T ss_pred hhhccccC---CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCC-------------cCCEEEEEEEHHHHHhhhh-----
Confidence 56777644 789999999999999999 8999999986410 0357889999999975311
Q ss_pred CCCCCCCCcccccCCCC--CcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcCCCcEeeeecCCccCCc
Q 015178 185 LSPTPNQPINSLNIVDD--AGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDEEGRLVGDISPFSFNSC 251 (412)
Q Consensus 185 l~~l~~~~i~~L~i~~~--~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~~g~lvG~IS~~dl~~~ 251 (412)
.....++++ +|++ + ++++.+++++.+|+++|.++++ ..+||||++|+++|+||..||.+.
T Consensus 169 --~~~~~~v~~--vm~~~~~-~~tv~~~~~l~ea~~~m~~~~~--~~lpVVd~~g~lvGiIt~~Dll~~ 230 (514)
T 1jcn_A 169 --KDHTTLLSE--VMTPRIE-LVVAPAGVTLKEANEILQRSKK--GKLPIVNDCDELVAIIARTDLKKN 230 (514)
T ss_dssp ----------------CCBC-CCCEETTCCSTTTTTHHHHHTC--SCCCEESSSSCCC----CCCCSSC
T ss_pred --ccCCCCHHH--HhCCCCC-CeEECCCCCHHHHHHHHHHcCC--CcccEECCCCeEEEEEEHHHHHHH
Confidence 012345655 6877 7 9999999999999999999999 999999999999999999999763
No 127
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=98.67 E-value=1e-08 Score=106.31 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=19.1
Q ss_pred hhccccCCCCeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHh
Q 015178 10 VSDLCIGKPALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFL 89 (412)
Q Consensus 10 v~dl~~~~~~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l 89 (412)
+.++|. .+++++++ ++|+.+|++.|.+++++.+||++. ++++|+|+..|++.
T Consensus 95 ~~~~m~--~~~~~v~~-~~tv~ea~~~~~~~~~~~~pVvd~-----------------------~~lvGivt~~Dl~~-- 146 (486)
T 2cu0_A 95 AERLIV--EDVITIAP-DETVDFALFLMEKHGIDGLPVVED-----------------------EKVVGIITKKDIAA-- 146 (486)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred hhhccc--cCceEECC-CCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHhcc--
Confidence 355664 57899999 999999999999999999999984 47999999999875
Q ss_pred hhcccCCCcccccCCchhhhccCCCCceEecCCCCcHHHHHHHHh-cCCceeeecCCCCCCCCCCCCCCcccCCCCeeee
Q 015178 90 CKEENLLNPESALQDPVSVLLPEASGVIRHLEPSASLLEAVDLLL-GGVQNLVIPLPAGTKLQPKPSLKSTFHNDSEYCW 168 (412)
Q Consensus 90 ~~~~~l~~~~~~l~~~V~dvm~~~~~~~~tV~~~~sL~~ai~lm~-~gv~Rl~V~~~~~~~~~~~~~~~~~~~~~~~v~i 168 (412)
. ...+++++|... ++++.+++++.+++++|. ++++++||+++ .++++|+
T Consensus 147 -~----------~~~~v~~im~~~---~~~v~~~~~l~eal~~m~~~~~~~lpVVde----------------~g~lvGi 196 (486)
T 2cu0_A 147 -R----------EGKLVKELMTKE---VITVPESIEVEEALKIMIENRIDRLPVVDE----------------RGKLVGL 196 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -C----------CCCCHHHHccCC---CeEECCcCcHHHHHHHHHHcCCCEEEEEec----------------CCeEEEE
Confidence 1 146799999754 889999999999999999 89999999863 3578899
Q ss_pred ecHHHHHHHHHHccCcCCCCCCCCcccccCCCCCcEEEEeCCCcHHHHHHHHHhcCCCCceeEEEcC
Q 015178 169 LTQEDLIRYFLNCIGLLSPTPNQPINSLNIVDDAGIFAIQYDEPAAFAIPLIAQSHINQTSVALVDE 235 (412)
Q Consensus 169 ITq~DIv~~l~~~~~~l~~l~~~~i~~L~i~~~~~v~tv~~~~~~~~a~~~m~~~~i~~s~vpVVd~ 235 (412)
||..||++.+.. . ... ...-.. ++.. -.+..+ . .+.+..|.+.++ ..+ |+|.
T Consensus 197 iT~~Dil~~~~~--~--~~~-~~~~g~--~~v~---~~~~~~-~-~~~a~~l~~~gv--d~l-vvdt 248 (486)
T 2cu0_A 197 ITMSDLVARKKY--K--NAV-RDENGE--LLVA---AAVSPF-D-IKRAIELDKAGV--DVI-VVDT 248 (486)
T ss_dssp ----------CC--T--TCC-BCTTSC--BCCE---EEECTT-C-HHHHHHHHHTTC--SEE-EEEC
T ss_pred EEHHHHHHhhhc--c--ccc-cccCCc--eeec---ceechh-h-HHHHHHHHHhcC--Cce-EEEe
Confidence 999999998531 0 000 000000 1111 123333 3 667888989998 775 5654
No 128
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=98.67 E-value=5.4e-08 Score=72.84 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=54.8
Q ss_pred CeEEEecCCchHHHHHHHHHhcCCceEEEeecCCCCCcccccccccccccccCcCCeEEEEEehHHHHHHhhhcccCCCc
Q 015178 19 ALRSLSVSSSTVADALSALKRLNESYISVWSCDHSAPKRKATTADIDDHHQDSAACRCIGKVCMVDIISFLCKEENLLNP 98 (412)
Q Consensus 19 ~lv~v~~~~~tv~~A~~~L~~~~I~svPV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vGivt~~Dil~~l~~~~~l~~~ 98 (412)
+++++++ ++|+.+|++.|.++++.++||+|. ++++|+||..||++++...+.
T Consensus 1 ~~~~v~~-~~~~~~a~~~m~~~~~~~~pV~d~-----------------------~~l~Givt~~dl~~~~~~~~~---- 52 (70)
T 3fio_A 1 KAIVVQP-KDTVDRVAKILSRNKAGSAVVMEG-----------------------DEILGVVTERDILDKVVAKGK---- 52 (70)
T ss_dssp CEEEECT-TCBHHHHHHHHHHTTCSEEEEEET-----------------------TEEEEEEEHHHHHHHTTTTTC----
T ss_pred CCeEECC-CCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHHHcCC----
Confidence 4688999 999999999999999999999993 589999999999998765321
Q ss_pred ccccCCchhhhccCC
Q 015178 99 ESALQDPVSVLLPEA 113 (412)
Q Consensus 99 ~~~l~~~V~dvm~~~ 113 (412)
.....+|+++|...
T Consensus 53 -~~~~~~v~~im~~~ 66 (70)
T 3fio_A 53 -NPKEVKVEEIMTKN 66 (70)
T ss_dssp -CGGGCBGGGTCEEC
T ss_pred -CcccCCHHHhcCCC
Confidence 12357899999743
No 129
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=52.01 E-value=22 Score=27.09 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCcEEEEEehHHHHHHHHHHH
Q 015178 365 VSYVWVVEEDCTLVGIVTFTGMLRVIRDRL 394 (412)
Q Consensus 365 ihrl~VVD~~~~lvGIVT~~DIL~~l~~~~ 394 (412)
...|=+||++|..+||++..+-|+...+.-
T Consensus 13 ~~eVrli~~~Ge~lGv~~~~eAl~~A~e~~ 42 (78)
T 1tif_A 13 AREVRLIDQNGDQLGIKSKQEALEIAARRN 42 (78)
T ss_dssp CSEEEEECTTSCEEEEEEHHHHHHHHHHTT
T ss_pred CCEEEEECCCCcCCCcccHHHHHHHHHHcC
Confidence 455779999999999999999888766543
No 130
>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*
Probab=35.07 E-value=16 Score=31.28 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEehHHHHH
Q 015178 352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTFTGMLR 388 (412)
Q Consensus 352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~~DIL~ 388 (412)
.+.+.++.+.+.+-.-|+|..+ ++++|+|.+.|.+|
T Consensus 120 ~~~~~~~~la~~G~T~v~VA~d-~~l~GvIalaD~iK 155 (156)
T 1svj_A 120 DVDQKVDQVARQGATPLVVVEG-SRVLGVIALKDIVK 155 (156)
T ss_dssp HHHHHHHHHHHTTCEEEEEEET-TEEEEEEEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEEEEC-CEEEEEEEEecCCC
Confidence 3788889999999999999875 79999999998654
No 131
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=34.39 E-value=29 Score=31.82 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=27.3
Q ss_pred cCCcEEEEEeCCCcEEEEEeh----------------HHHHHHHHHHHhhccccCC
Q 015178 363 RRVSYVWVVEEDCTLVGIVTF----------------TGMLRVIRDRLRSMAKAEN 402 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~----------------~DIL~~l~~~~~~~~~~~~ 402 (412)
.+-..=|++|.+|++|||+|. .+.++.+++++.....--+
T Consensus 184 ~G~SGGPLvn~~G~vVGI~s~~~~~~~~~~g~~faIP~~~~~~~~~~l~~~g~~~~ 239 (245)
T 3sti_A 184 RGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEILE 239 (245)
T ss_dssp TTTTTSEEECTTSCEEEEEECCC------CCCEEEEEHHHHHHHHHHHHHHHHHC-
T ss_pred CCcchhHeecCCCeEEEEEEeEECCCCCcceEEEEEeHHHHHHHHHHHHHcCCCCC
Confidence 456666899989999999875 3566677766664443333
No 132
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=33.78 E-value=38 Score=30.50 Aligned_cols=44 Identities=20% Similarity=0.090 Sum_probs=27.5
Q ss_pred cCCcEEEEEeCCCcEEEEEeh-------------------HHHHHHHHHHHhhccccCCCCCc
Q 015178 363 RRVSYVWVVEEDCTLVGIVTF-------------------TGMLRVIRDRLRSMAKAENPNFC 406 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~-------------------~DIL~~l~~~~~~~~~~~~~~~~ 406 (412)
.+-..=|++|.+|++|||+|. .+.++.+++++........+.-|
T Consensus 173 ~G~SGGPlv~~~G~vvGI~s~~~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~~g~~~~~~~~ 235 (237)
T 3lgi_A 173 HGNSGGALVNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRHHHH 235 (237)
T ss_dssp TTCTTCEEECTTCCEEEEECCCCCCCTTSCCCCSCEEEEEHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCchHHeeCCCCeEEEEEeeeeccCCCCcCcCceEEEEEHHHHHHHHHHHHHcCCCCCchhh
Confidence 455566999988999999876 23566666666655554444433
No 133
>3v67_A Sensor protein CPXA; PAS fold, signal sensing, signaling protein, merohedral twin; 2.30A {Vibrio parahaemolyticus}
Probab=30.67 E-value=89 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCC------cEEEEEeCCCcEEEEEehHHH-HHHHHHHHhhccccCCC
Q 015178 352 SLMAVIMQALARRV------SYVWVVEEDCTLVGIVTFTGM-LRVIRDRLRSMAKAENP 403 (412)
Q Consensus 352 sl~~v~~~m~~~~i------hrl~VVD~~~~lvGIVT~~DI-L~~l~~~~~~~~~~~~~ 403 (412)
.|...+..+..++. -|+++||.+|+++|--..+|. ++++..-+.+...+++|
T Consensus 36 ~l~r~l~~l~~~~~~~~d~~~r~~l~d~eG~Il~~~~~~~~~~ralrnFi~~sd~~~~P 94 (138)
T 3v67_A 36 DLGRILFRVEGNRAGKHDPRPRVFFSDYNGNVLTTDKRSNFQLRAMQNFVTSIEDYNKP 94 (138)
T ss_dssp CHHHHHHHHHHTCCCTTCCSCEEEEECTTSCEECCCCSCHHHHHHHHHHHHHCSCTTSC
T ss_pred cHHHHHHHhcccccccCCCCccEEEEcCCCCEecCCcccchhHHHHHHHHHhccCccCc
Confidence 57777777765533 279999999999997777664 57777777777777777
No 134
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=26.95 E-value=1.2e+02 Score=24.32 Aligned_cols=45 Identities=7% Similarity=0.072 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCcEEEEEeCCCcEEEE-EehHHHHHHHHHHHhhcc
Q 015178 354 MAVIMQALARRVSYVWVVEEDCTLVGI-VTFTGMLRVIRDRLRSMA 398 (412)
Q Consensus 354 ~~v~~~m~~~~ihrl~VVD~~~~lvGI-VT~~DIL~~l~~~~~~~~ 398 (412)
.++.+.+--.++..+.++|.+|++++. ++..++.+.+.+.+....
T Consensus 99 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~l~~~l~~l~~~~~ 144 (152)
T 2lrn_A 99 KDVLESYCIVGFPHIILVDPEGKIVAKELRGDDLYNTVEKFVNGAK 144 (152)
T ss_dssp HHHHHHTTCCSSCEEEEECTTSEEEEECCCTTHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCcCCeEEEECCCCeEEEeeCCHHHHHHHHHHHHhhcc
Confidence 344444444566788899999999998 666666665555444333
No 135
>3by8_A Sensor protein DCUS; histidine kinase sensor domain, inner membrane, membrane, phosphoprotein, transferase, transmembrane; 1.45A {Escherichia coli} SCOP: d.110.6.1 PDB: 1ojg_A
Probab=21.83 E-value=44 Score=27.46 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=21.2
Q ss_pred EEEEeCCCcEEEEEehHHHHHHHHHHHh
Q 015178 368 VWVVEEDCTLVGIVTFTGMLRVIRDRLR 395 (412)
Q Consensus 368 l~VVD~~~~lvGIVT~~DIL~~l~~~~~ 395 (412)
.||.|++|+++|+|+..--+..+...+.
T Consensus 111 ~PV~~~~g~viGvv~vg~~~~~~~~~~~ 138 (142)
T 3by8_A 111 TPIYDENHKQIGVVAIGLELSRVTQQIN 138 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEHHHHHHHHH
T ss_pred EeEEcCCCCEEEEEEEeEEHHHHHHHHH
Confidence 4898877999999998776666655443
No 136
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A
Probab=20.80 E-value=49 Score=29.93 Aligned_cols=23 Identities=30% Similarity=0.118 Sum_probs=17.8
Q ss_pred cCCcEEEEEeCCCcEEEEEehHH
Q 015178 363 RRVSYVWVVEEDCTLVGIVTFTG 385 (412)
Q Consensus 363 ~~ihrl~VVD~~~~lvGIVT~~D 385 (412)
.+-..=||+|.+|++|||-|..|
T Consensus 124 pGdSGsPVvn~dG~VIGVHt~s~ 146 (213)
T 3fan_A 124 CGDSGSPVITEAGELVGVHTGSN 146 (213)
T ss_dssp CCSTTCEEEETTSCEEEEEEC--
T ss_pred CCCCCCccCCCCCcEEEEEeccC
Confidence 35555699999999999999887
No 137
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Probab=20.11 E-value=1.2e+02 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEeCCCcEEEEEeh
Q 015178 352 SLMAVIMQALARRVSYVWVVEEDCTLVGIVTF 383 (412)
Q Consensus 352 sl~~v~~~m~~~~ihrl~VVD~~~~lvGIVT~ 383 (412)
...+.+.....+.-...+|+.++|++||.+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~ 68 (157)
T 3mgd_A 37 ELTRYFNNKLANNLLVEWIAEENNQIIATAAI 68 (157)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEEEECCEEEEEEEE
Confidence 45556666667777788888888999999865
Done!