BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015179
(412 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RH9|A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon
Esculentum (Tomato)
Length = 373
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 227/377 (60%), Positives = 299/377 (79%), Gaps = 6/377 (1%)
Query: 33 NQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTW 92
N F T+G+HFA+NGK LY+NGFNAYW++Y A DPST+ KVT FQQA+KY MN+ARTW
Sbjct: 3 NNNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTW 62
Query: 93 AFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWA 152
AFS GG R LQ +PG YNE F+ LDFV++EA++YG+++I+SLVNN+ +GG+ +YVEWA
Sbjct: 63 AFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWA 122
Query: 153 RERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCP 212
+RGQ L ++DDF+TN +VK +YKN+VK VLTR+N+IT VAYKDDPTI +WEL+NE RCP
Sbjct: 123 VQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCP 182
Query: 213 TDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITN 272
+D SG Q W+ EMA ++KSID++HLLE+GLEGFYG + ++YNPN+ GT+FI+N
Sbjct: 183 SDLSGKTFQNWVLEMAGYLKSIDSNHLLEIGLEGFYGN---DMRQYNPNSYIFGTNFISN 239
Query: 273 NQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKS 332
NQ+ +DF TIH+YP QWLP + E Q + ++WIQ HI DS +LKKP+LI EFGKS
Sbjct: 240 NQVQGIDFTTIHMYPNQWLP--GLTQEAQDKWASQWIQVHIDDS-KMLKKPLLIAEFGKS 296
Query: 333 YKYPGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYEVVLESSP 392
K PGY+ KR++YF+K+Y I++CAKS GPCGGGLFWQ++ QGM++F DGY+VVL+ SP
Sbjct: 297 TKTPGYTVAKRDNYFEKIYGTIFNCAKSGGPCGGGLFWQVLGQGMSSFDDGYQVVLQESP 356
Query: 393 STANIINQQSLRLAVLS 409
ST+ +I QSLRL+ LS
Sbjct: 357 STSRVILLQSLRLSKLS 373
>pdb|3PZ9|A Chain A, Native Structure Of Endo-1,4-Beta-D-Mannanase From
Thermotoga Petrophila Rku-1
pdb|3PZG|A Chain A, I222 Crystal Form Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1
pdb|3PZI|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Beta-D-Glucose
pdb|3PZM|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Three Glycerol Molecules
pdb|3PZN|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Citrate And Glycerol
pdb|3PZO|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 In Complex With Three Maltose Molecules
pdb|3PZQ|A Chain A, Structure Of The Hyperthermostable
Endo-1,4-Beta-D-Mannanase From Thermotoga Petrophila
Rku-1 With Maltose And Glycerol
Length = 383
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 188/388 (48%), Gaps = 60/388 (15%)
Query: 41 GSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYR 100
GSH +NGK G N Y+M Y + + + + A G+ + R W F DG
Sbjct: 18 GSHM-LNGKEFRFIGSNNYYMHY-----KSNRMIDSVLESARDMGIKVLRIWGFLDGESY 71
Query: 101 A------LQVSPGSYN--------EDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRP 146
+ PG + ++ F+ LD+ +A+A+E G+ +I+ LVNN+ ++GG
Sbjct: 72 CRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIKLIIVLVNNWDDFGGMN 131
Query: 147 RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELM 206
+YV W + DDFY + +K+ YK +V ++ +N TGV Y+++PTI AWEL
Sbjct: 132 QYVRWF-----GGTHHDDFYRDERIKEEYKKYVSFLINHVNVYTGVPYREEPTIMAWELA 186
Query: 207 NEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNP------ 260
NE RC TD SG L EW+KEM++++KS+D +HL+ VG EGF+ + + P
Sbjct: 187 NELRCETDKSGNTLVEWVKEMSSYIKSLDPNHLVAVGDEGFF----SNYEGFKPYGGEAE 242
Query: 261 --NNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDS 318
N G D+ I VDF T H+YP W S E + +WI+ HI+ +
Sbjct: 243 WAYNGWSGVDWKKLLSIETVDFGTFHLYPSHW----GVSPENYAQWGAKWIEDHIKIAKE 298
Query: 319 ILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMT 378
I KP+++ E+G P + R + ++ D +YD G +FW L G
Sbjct: 299 I-GKPVVLEEYG----IPKSAPVNRTAIYRLWNDLVYDLGGD-----GAMFWMLAGIGEG 348
Query: 379 NFG---------DGYEVVLESSPSTANI 397
+ DG+ +V + SP I
Sbjct: 349 SDRDERGYYPDYDGFRIVNDDSPEAELI 376
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 149/327 (45%), Gaps = 61/327 (18%)
Query: 36 FAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFS 95
F T G HF ++GK Y G NAY+ + P + +TAA G+ + RTW F+
Sbjct: 6 FVTTEGDHFKLDGKDFYFAGSNAYYFPF-NDQPDIEKGMTAA----RAAGLTVFRTWGFN 60
Query: 96 DGGYRALQVSPGSYNEDT-----------FKA----------LDFVVAEAREYGVYVILS 134
D + Y + F+A D VV A + G+ +I++
Sbjct: 61 DKNRTYIPTGLPQYGNEGAGDPTNTVFQWFEADGTQTIDVSPFDKVVDSATKTGIKLIVA 120
Query: 135 LVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAY 194
L NN+ +YGG Y K DDFYT +K+ +K +VKA++TR Y
Sbjct: 121 LTNNWADYGGMDVYT-----VNLGGKYHDDFYTVPKIKEAFKRYVKAMVTR--------Y 167
Query: 195 KDDPTIFAWELMNEARCPTDPSGTL-----------LQEWIKEMAAHVKSIDNHHLLEVG 243
+D I AWEL NEARC D + L + WI+EM+A+VKS+D +HL+ G
Sbjct: 168 RDSEAILAWELANEARCGADGTRNLPRSEKGCTTETVTGWIEEMSAYVKSLDGNHLVTWG 227
Query: 244 LEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLA 303
EG + E + N G DF + +VDF T+H+YP+ W +
Sbjct: 228 GEGGFNRGEDEEDGF--YNGADGGDFDRELGLRNVDFGTMHLYPDWWSK--------SIE 277
Query: 304 FVNRWIQAHIQDSDSILKKPILIGEFG 330
+ N+WI H S KP+++ E+G
Sbjct: 278 WSNQWIHDHAA-SGRAANKPVVLEEYG 303
>pdb|1QNO|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNP|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNQ|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNR|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
pdb|1QNS|A Chain A, The 3-d Structure Of A Trichoderma Reesei B-mannanase From
Glycoside Hydrolase Family 5
Length = 344
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 142/310 (45%), Gaps = 48/310 (15%)
Query: 35 EFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAF 94
F +G+ F ++GK Y G N YW + + A V + F + G+ + R W F
Sbjct: 3 SFVTISGTQFNIDGKVGYFAGTNCYWCSFL----TNHADVDSTFSHISSSGLKVVRVWGF 58
Query: 95 SDGGYRALQVSPG--------------SYNEDTFKALDFVVAEAREYGVYVILSLVNNFK 140
+D Q SPG + D + LD+VV A ++ + +I+ VNN+
Sbjct: 59 ND---VNTQPSPGQIWFQKLSATGSTINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWS 115
Query: 141 EYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTI 200
+YGG YV N +YTN + Y+ +V+AV++R Y + I
Sbjct: 116 DYGGINAYVN------AFGGNATTWYTNTAAQTQYRKYVQAVVSR--------YANSTAI 161
Query: 201 FAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNP 260
FAWEL NE RC + ++Q W ++ +VKS+D++HL+ +G EG G S + P
Sbjct: 162 FAWELGNEPRCNGCSTDVIVQ-WATSVSQYVKSLDSNHLVTLGDEGL-GLSTGDGAY--P 217
Query: 261 NNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSIL 320
GTDF N QI +DF T H+YP+ W + N WIQ H +
Sbjct: 218 YTYGEGTDFAKNVQIKSLDFGTFHLYPDSW--------GTNYTWGNGWIQTHAAACLAA- 268
Query: 321 KKPILIGEFG 330
KP + E+G
Sbjct: 269 GKPCVFEEYG 278
>pdb|1UUQ|A Chain A, Exo-mannosidase From Cellvibrio Mixtus
pdb|1UZ4|A Chain A, Common Inhibition Of Beta-Glucosidase And Beta-Mannosidase
By Isofagomine Lactam Reflects Different Conformational
Intineraries For Glucoside And Mannoside Hydrolysis
Length = 440
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 170/385 (44%), Gaps = 48/385 (12%)
Query: 27 MAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPST---KAKVTAAFQQATK 83
+A + ++ F + NG HF + GKP + G N W Y G P+ + ++
Sbjct: 15 VATSPAHEHFVRVNGGHFELQGKPYVITGVNM-WYAAYLGAPNEVGDRDRLAKELDNLKA 73
Query: 84 YGMNIARTWAFSDGGYRALQVSP------GSYNEDTFKALDFVVAEAREYGVYVILSLVN 137
G+N R A S+ V P G+Y+E + LD+++ E + + V+L N
Sbjct: 74 IGVNNLRVLAVSEKSEINSAVKPAVTNGFGNYDETLLQGLDYLLVELAKRDMTVVLYFNN 133
Query: 138 NFKEYGGRPRYVEW-----------ARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRI 186
++ GG +Y+ W E + FY + +Q Y+ ++ ++TR+
Sbjct: 134 FWQWSGGMTQYMAWIEGEPVQDPNVTNEWEAFMAKSASFYRSEKAQQEYRKTLEKIITRV 193
Query: 187 NSITGVAYKDDPTIFAWELMNEAR----CPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242
NSI G AY DD TI +W+L NE R T + +W+ AA++K++D HHL+
Sbjct: 194 NSINGKAYVDDATIMSWQLANEPRPGNSQTTAEEKQIYIDWVHAAAAYIKTLDAHHLVSS 253
Query: 243 GLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQW-----LPPGNTS 297
G EG G SV + Q FI + PD+D+ T H++ W P T
Sbjct: 254 GSEGEMG-SVNDMQV-----------FIDAHATPDIDYLTYHMWIRNWSWFDKTKPAETW 301
Query: 298 DEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGY----SEQKRNSYFQKVYDA 353
N +++AHI D L KP+++ EFG Y + + R++YF+ V++
Sbjct: 302 PSAWEKAQN-YMRAHI-DVAKQLNKPLVLEEFGLDRDMGSYAMDSTTEYRDNYFRGVFEL 359
Query: 354 IYDCAKSKGPCGGGLFWQLMTQGMT 378
+ + P G W G T
Sbjct: 360 MLASLEQGEPSAGYNIWAWNGYGRT 384
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 18/110 (16%)
Query: 42 SHFAVNGKPLYLNGFNAYWM--LYYAGD---PSTKAKVTAAFQQATKYGMNIARTW---- 92
HF +NG+ ++L+G N WM Y GD K ++ F++ G N R W
Sbjct: 7 GHFVLNGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNSMRLWIHIQ 66
Query: 93 -----AFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137
AF+D G+ G+ +D LD A++Y + V L N
Sbjct: 67 GETTPAFNDQGFVTGPDKQGTMLDDMKDLLD----TAKKYNILVFPCLWN 112
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 67/169 (39%), Gaps = 35/169 (20%)
Query: 194 YKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYG---- 249
YKD P +E++NE P E ++E ++SID H + +G + G
Sbjct: 122 YKDYPETLFFEILNEPHGNLTPEK--WNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 --ESVPERQK--------YNPNN-TPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSD 298
SVP+ +K YNP T G +++ ++ +W P +
Sbjct: 180 EKLSVPKWEKNSIVTIHYYNPFEFTHQGAEWVEGSE---------KWLGRKWGSPDDQKH 230
Query: 299 EIQ-LAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSY 346
I+ F+ W + + K+PI IGEFG K S K S+
Sbjct: 231 LIEEFNFIEEWSKKN--------KRPIYIGEFGAYRKADLESRIKWTSF 271
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 10/51 (19%)
Query: 173 QYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEW 223
Q +N+++AV+ R YKDD I +W+++NE P DP G W
Sbjct: 121 QRLENYIRAVVLR--------YKDD--IKSWDVVNEVIEPNDPGGMRNSPW 161
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 84 YGMNIARTWAFSDGG-------YRALQVSPGSYNEDTFKALDFVVAEAREYGV 129
+G+ + T +F DGG + A+ V+ G ED A D+V A E G+
Sbjct: 199 FGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGI 251
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 84 YGMNIARTWAFSDGG-------YRALQVSPGSYNEDTFKALDFVVAEAREYGV 129
+G+ + T +F DGG + A+ V+ G ED A D+V A E G+
Sbjct: 199 FGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKEDVKAAADYVTAPIDEDGI 251
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 62/240 (25%)
Query: 113 TFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVK 172
+ + +D +VA A + G+ +IL R R +YT++V +
Sbjct: 93 SLQVMDKIVAYAGQIGLRIILD------------------RHRPDCSGQSALWYTSSVSE 134
Query: 173 QYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPS----GTLLQEW--IKE 226
+ + ++A+ R YK +PT+ ++L NE P DP+ G +W E
Sbjct: 135 ATWISDLQALAQR--------YKGNPTVVGFDLHNE---PHDPACWGCGDPSIDWRLAAE 183
Query: 227 MAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDV-------- 278
A + N +LL + +EG Q YN ++ G + Q P V
Sbjct: 184 RAGNAVLSVNPNLL-IFVEGV--------QSYNGDSYWWGGNLQGAGQYPVVLNVPNRLV 234
Query: 279 ----DFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYK 334
D+AT +YP+ W + + + W Q+ P+ +GEFG + +
Sbjct: 235 YSAHDYAT-SVYPQTWFSDPTFPNNMPGIWNKNWGYLFNQN-----IAPVWLGEFGTTLQ 288
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 35/169 (20%)
Query: 194 YKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYG---- 249
YKD P +E++N P E ++E ++SID H + +G + G
Sbjct: 122 YKDYPETLFFEILNAPHGNLTPEK--WNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 --ESVPERQK--------YNPNN-TPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSD 298
SVP+ +K YNP T G +++ ++ +W P +
Sbjct: 180 EKLSVPKWEKNSIVTIHYYNPFEFTHQGAEWVEGSE---------KWLGRKWGSPDDQKH 230
Query: 299 EIQ-LAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSY 346
I+ F+ W + + K+PI IGEFG K S K S+
Sbjct: 231 LIEEFNFIEEWSKKN--------KRPIYIGEFGAYRKADLESRIKWTSF 271
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 35/169 (20%)
Query: 194 YKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYG---- 249
YKD P +E++N P E ++E ++SID H + +G + G
Sbjct: 122 YKDYPETLFFEILNAPHGNLTPEK--WNELLEEALKVIRSIDKKHTIIIGTAEWGGISAL 179
Query: 250 --ESVPERQK--------YNPNN-TPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSD 298
SVP+ +K YNP T G +++ ++ +W P +
Sbjct: 180 EKLSVPKWEKNSIVTIHYYNPFEFTHQGAEWVEGSE---------KWLGRKWGSPDDQKH 230
Query: 299 EIQ-LAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSY 346
I+ F+ W + + K+PI IGEFG K S K S+
Sbjct: 231 LIEEFNFIEEWSKKN--------KRPIYIGEFGAYRKADLESRIKWTSF 271
>pdb|1FG3|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase Complexed With L-Histidinol
pdb|1FG7|A Chain A, Crystal Structure Of L-Histidinol Phosphate
Aminotransferase With Pyridoxal-5'-Phosphate
Length = 356
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 370 WQLMTQGMTNFGDGYEVVLESSPS--TANIINQQSLR 404
WQL QG+++ DG +VV SP+ T +IN Q R
Sbjct: 133 WQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFR 169
>pdb|1GEW|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Pyridoxal 5'-Phosphate
pdb|1GEX|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With Histidinol-Phosphate
pdb|1GEY|A Chain A, Crystal Structure Of Histidinol-Phosphate Aminotransferase
Complexed With N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|1IJI|A Chain A, Crystal Structure Of L-histidinol Phosphate
Aminotransferase With Plp
Length = 356
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 370 WQLMTQGMTNFGDGYEVVLESSPS--TANIINQQSLR 404
WQL QG+++ DG +VV SP+ T +IN Q R
Sbjct: 133 WQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFR 169
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 216 SGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGT 267
S L+ +W M+ H K+ HH L G FYG S+ + P V T
Sbjct: 107 STALIGKWHLGMSCHSKTDFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFT 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,690,683
Number of Sequences: 62578
Number of extensions: 627247
Number of successful extensions: 1385
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1356
Number of HSP's gapped (non-prelim): 26
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)