Query 015179
Match_columns 412
No_of_seqs 185 out of 2153
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 100.0 9.3E-30 2E-34 241.6 22.9 268 47-375 4-280 (281)
2 PRK10150 beta-D-glucuronidase; 99.9 2.6E-23 5.7E-28 217.4 31.6 289 34-390 273-578 (604)
3 COG3934 Endo-beta-mannanase [C 99.9 8E-23 1.7E-27 195.4 10.3 271 72-392 26-307 (587)
4 PF02836 Glyco_hydro_2_C: Glyc 99.9 1.6E-20 3.5E-25 180.0 22.3 157 37-244 1-158 (298)
5 PF02449 Glyco_hydro_42: Beta- 99.8 3.4E-19 7.3E-24 176.1 18.6 285 71-407 9-373 (374)
6 PRK09525 lacZ beta-D-galactosi 99.8 1.9E-18 4.2E-23 188.3 25.6 240 37-377 336-576 (1027)
7 PRK10340 ebgA cryptic beta-D-g 99.8 2.3E-18 5.1E-23 188.0 26.0 228 37-376 320-549 (1021)
8 TIGR03356 BGL beta-galactosida 99.8 5.7E-18 1.2E-22 169.1 20.8 284 70-385 52-403 (427)
9 PLN02998 beta-glucosidase 99.8 6.9E-17 1.5E-21 163.2 22.3 284 70-385 80-455 (497)
10 PRK09593 arb 6-phospho-beta-gl 99.7 1.3E-16 2.8E-21 161.0 21.7 288 70-389 71-445 (478)
11 PLN02849 beta-glucosidase 99.7 6.4E-16 1.4E-20 156.5 24.8 284 70-385 77-450 (503)
12 PRK09589 celA 6-phospho-beta-g 99.7 5.4E-16 1.2E-20 156.5 22.7 282 70-383 65-433 (476)
13 PRK13511 6-phospho-beta-galact 99.7 4.8E-16 1E-20 157.0 21.9 283 70-385 52-435 (469)
14 PLN02814 beta-glucosidase 99.7 5.9E-16 1.3E-20 156.7 21.7 284 70-385 75-450 (504)
15 PRK15014 6-phospho-beta-glucos 99.7 6.8E-16 1.5E-20 155.6 22.0 281 71-383 68-434 (477)
16 TIGR01233 lacG 6-phospho-beta- 99.7 1.2E-15 2.5E-20 153.9 23.4 301 70-403 51-455 (467)
17 PRK09852 cryptic 6-phospho-bet 99.7 7.9E-16 1.7E-20 154.9 22.1 287 71-389 70-441 (474)
18 PF03198 Glyco_hydro_72: Gluca 99.7 2.9E-16 6.2E-21 145.9 16.8 277 30-388 4-290 (314)
19 COG2723 BglB Beta-glucosidase/ 99.7 3E-15 6.6E-20 146.4 23.5 284 71-385 58-421 (460)
20 PF07745 Glyco_hydro_53: Glyco 99.7 2.5E-16 5.5E-21 150.2 15.3 242 74-371 26-295 (332)
21 PF00232 Glyco_hydro_1: Glycos 99.7 2.1E-17 4.4E-22 167.0 8.1 284 70-385 56-421 (455)
22 COG3867 Arabinogalactan endo-1 99.6 1.9E-13 4.1E-18 124.2 20.5 250 73-371 64-341 (403)
23 COG3250 LacZ Beta-galactosidas 99.6 2.7E-14 5.8E-19 150.6 16.9 152 34-246 281-435 (808)
24 PLN03059 beta-galactosidase; P 99.5 4.8E-13 1E-17 139.6 19.5 181 36-242 29-220 (840)
25 PF01301 Glyco_hydro_35: Glyco 99.5 8.4E-13 1.8E-17 127.0 18.5 170 43-239 1-175 (319)
26 PF13204 DUF4038: Protein of u 99.5 7.9E-13 1.7E-17 125.6 17.0 168 41-244 2-186 (289)
27 smart00633 Glyco_10 Glycosyl h 99.5 1.9E-12 4E-17 121.2 17.4 220 99-382 3-234 (254)
28 COG2730 BglC Endoglucanase [Ca 99.5 2.4E-12 5.1E-17 128.3 17.0 114 74-211 75-193 (407)
29 PF12876 Cellulase-like: Sugar 99.4 9.7E-13 2.1E-17 102.3 5.8 75 194-286 5-88 (88)
30 PF01229 Glyco_hydro_39: Glyco 99.3 1.8E-12 3.9E-17 132.2 8.3 279 71-390 38-346 (486)
31 KOG0626 Beta-glucosidase, lact 99.3 4.5E-10 9.6E-15 111.3 20.4 284 71-387 90-479 (524)
32 COG1874 LacA Beta-galactosidas 99.1 6.1E-10 1.3E-14 114.9 13.7 171 40-236 4-191 (673)
33 KOG0496 Beta-galactosidase [Ca 99.0 3.7E-09 8.1E-14 106.7 13.3 153 36-210 19-176 (649)
34 PF00331 Glyco_hydro_10: Glyco 98.9 3.4E-08 7.4E-13 95.4 15.3 245 78-380 27-291 (320)
35 KOG2230 Predicted beta-mannosi 98.7 3.7E-07 8E-12 90.2 13.3 118 44-211 330-447 (867)
36 PF11790 Glyco_hydro_cc: Glyco 98.5 1.3E-06 2.8E-11 81.0 11.6 144 200-372 66-212 (239)
37 COG5309 Exo-beta-1,3-glucanase 98.5 3E-05 6.4E-10 70.5 19.3 199 71-351 62-266 (305)
38 COG3693 XynA Beta-1,4-xylanase 98.4 1.6E-05 3.4E-10 74.5 15.3 116 99-243 69-192 (345)
39 PF14488 DUF4434: Domain of un 98.4 1.8E-05 3.9E-10 68.9 14.7 140 69-243 17-160 (166)
40 PF14587 Glyco_hydr_30_2: O-Gl 98.1 0.00067 1.5E-08 65.9 20.8 266 82-384 57-366 (384)
41 COG5520 O-Glycosyl hydrolase [ 98.1 0.00048 1E-08 65.2 18.9 162 169-375 145-312 (433)
42 PF02055 Glyco_hydro_30: O-Gly 97.6 0.0022 4.9E-08 65.4 15.2 172 169-383 200-392 (496)
43 PF02638 DUF187: Glycosyl hydr 97.3 0.019 4.1E-07 55.3 16.9 208 70-288 17-263 (311)
44 PF03662 Glyco_hydro_79n: Glyc 97.2 0.00046 1E-08 65.9 5.1 23 114-136 108-130 (319)
45 PRK10785 maltodextrin glucosid 96.6 0.038 8.3E-07 58.2 13.8 162 70-241 177-370 (598)
46 COG3664 XynB Beta-xylosidase [ 96.6 0.034 7.3E-07 54.2 12.1 254 74-388 6-276 (428)
47 PF13200 DUF4015: Putative gly 96.5 0.62 1.4E-05 44.7 20.2 198 70-292 11-232 (316)
48 COG3934 Endo-beta-mannanase [C 96.2 0.00016 3.6E-09 70.8 -6.1 232 170-410 203-470 (587)
49 TIGR01515 branching_enzym alph 96.2 0.14 3.1E-06 54.1 15.2 165 74-242 159-347 (613)
50 PRK05402 glycogen branching en 96.0 0.22 4.7E-06 53.8 15.9 164 74-241 268-455 (726)
51 PRK12313 glycogen branching en 96.0 0.2 4.4E-06 53.2 15.4 162 74-241 173-359 (633)
52 PLN02161 beta-amylase 96.0 0.13 2.7E-06 51.7 12.6 133 70-234 115-252 (531)
53 PRK14705 glycogen branching en 95.9 0.24 5.2E-06 55.8 15.9 166 73-242 767-956 (1224)
54 TIGR02402 trehalose_TreZ malto 95.9 0.22 4.8E-06 51.8 14.8 149 70-237 109-271 (542)
55 PLN02705 beta-amylase 95.7 0.18 3.8E-06 51.7 12.5 133 70-234 266-403 (681)
56 PLN02803 beta-amylase 95.6 0.17 3.7E-06 51.1 12.1 133 70-234 105-242 (548)
57 smart00642 Aamy Alpha-amylase 95.6 0.058 1.3E-06 47.0 7.8 67 70-136 17-91 (166)
58 PLN02801 beta-amylase 95.6 0.22 4.8E-06 50.1 12.5 132 70-233 35-171 (517)
59 PLN02905 beta-amylase 95.5 0.22 4.7E-06 51.2 12.5 133 70-234 284-421 (702)
60 PRK14706 glycogen branching en 95.5 0.5 1.1E-05 50.1 16.0 164 73-242 169-356 (639)
61 COG3534 AbfA Alpha-L-arabinofu 95.5 0.16 3.4E-06 50.3 10.9 180 73-288 50-246 (501)
62 PLN00197 beta-amylase; Provisi 95.3 0.32 6.9E-06 49.4 12.8 133 70-234 125-262 (573)
63 PRK12568 glycogen branching en 95.3 0.55 1.2E-05 50.2 15.3 164 72-242 270-460 (730)
64 cd06564 GH20_DspB_LnbB-like Gl 95.0 1.6 3.5E-05 42.4 16.7 145 71-236 16-194 (326)
65 cd06565 GH20_GcnA-like Glycosy 94.8 1.1 2.4E-05 43.0 14.8 148 70-237 15-180 (301)
66 cd02742 GH20_hexosaminidase Be 94.8 1.2 2.6E-05 42.8 15.1 146 70-235 14-184 (303)
67 PLN02447 1,4-alpha-glucan-bran 94.7 1.5 3.2E-05 47.2 16.5 162 73-242 252-444 (758)
68 KOG2566 Beta-glucocerebrosidas 94.6 1.9 4.1E-05 41.9 15.2 174 170-385 226-419 (518)
69 PLN02960 alpha-amylase 94.6 2.1 4.6E-05 46.5 17.3 165 73-242 418-609 (897)
70 PF00128 Alpha-amylase: Alpha 94.5 0.058 1.3E-06 51.3 5.3 65 71-135 3-72 (316)
71 PF14871 GHL6: Hypothetical gl 93.9 0.27 5.8E-06 41.0 7.3 109 75-185 3-122 (132)
72 TIGR02104 pulA_typeI pullulana 93.8 1.4 3E-05 46.7 14.2 144 76-241 168-346 (605)
73 cd06568 GH20_SpHex_like A subg 93.4 5.2 0.00011 38.9 16.5 144 70-236 16-189 (329)
74 PF12891 Glyco_hydro_44: Glyco 93.0 0.61 1.3E-05 42.7 8.6 123 114-245 23-179 (239)
75 PF01120 Alpha_L_fucos: Alpha- 92.4 3.6 7.8E-05 40.3 13.9 145 72-241 91-242 (346)
76 PLN02361 alpha-amylase 92.4 0.8 1.7E-05 45.7 9.3 85 46-135 8-96 (401)
77 COG0296 GlgB 1,4-alpha-glucan 92.2 2.5 5.4E-05 44.4 13.0 162 70-238 163-351 (628)
78 cd06563 GH20_chitobiase-like T 92.2 6.1 0.00013 38.9 15.2 63 71-136 17-107 (357)
79 TIGR02456 treS_nterm trehalose 91.8 0.55 1.2E-05 48.9 7.7 67 69-135 25-96 (539)
80 cd06570 GH20_chitobiase-like_1 91.5 4.8 0.0001 38.8 13.3 63 71-136 17-89 (311)
81 PLN00196 alpha-amylase; Provis 91.3 1.2 2.7E-05 44.8 9.4 80 51-135 26-112 (428)
82 PRK10933 trehalose-6-phosphate 91.2 0.77 1.7E-05 48.0 8.1 63 70-135 31-101 (551)
83 PRK09441 cytoplasmic alpha-amy 91.1 1.2 2.6E-05 45.7 9.4 64 72-135 22-101 (479)
84 TIGR02102 pullulan_Gpos pullul 91.1 6.8 0.00015 44.2 15.6 150 71-241 479-669 (1111)
85 TIGR02403 trehalose_treC alpha 91.1 0.78 1.7E-05 47.8 8.0 66 70-135 25-95 (543)
86 PLN02877 alpha-amylase/limit d 90.5 8.2 0.00018 42.7 15.3 23 113-135 464-486 (970)
87 cd06545 GH18_3CO4_chitinase Th 90.5 12 0.00027 34.7 14.8 93 115-243 46-138 (253)
88 COG1649 Uncharacterized protei 90.4 8 0.00017 38.6 13.8 208 70-288 62-309 (418)
89 TIGR01531 glyc_debranch glycog 90.2 1.2 2.5E-05 50.7 8.6 97 34-135 96-205 (1464)
90 cd06562 GH20_HexA_HexB-like Be 90.0 12 0.00025 36.7 14.8 63 71-136 17-91 (348)
91 PRK09505 malS alpha-amylase; R 89.9 1.2 2.7E-05 47.5 8.3 66 70-135 228-312 (683)
92 PF00728 Glyco_hydro_20: Glyco 89.8 1.7 3.7E-05 42.4 8.8 148 71-237 17-211 (351)
93 PRK03705 glycogen debranching 89.7 0.81 1.8E-05 48.7 6.8 58 77-135 184-262 (658)
94 PF01373 Glyco_hydro_14: Glyco 89.6 0.55 1.2E-05 46.2 5.0 77 71-154 15-96 (402)
95 PLN02784 alpha-amylase 89.1 2.7 5.9E-05 45.5 10.1 82 47-135 500-588 (894)
96 COG3589 Uncharacterized conser 88.7 1.6 3.4E-05 41.8 7.2 68 53-136 3-70 (360)
97 TIGR02103 pullul_strch alpha-1 88.3 11 0.00023 41.7 14.1 112 113-247 402-527 (898)
98 TIGR02401 trehalose_TreY malto 86.8 2.6 5.6E-05 45.7 8.3 67 70-136 14-86 (825)
99 PF05913 DUF871: Bacterial pro 85.7 2.3 5.1E-05 41.7 6.8 66 54-136 2-68 (357)
100 PRK14511 maltooligosyl trehalo 85.2 3.4 7.4E-05 45.1 8.3 67 70-136 18-90 (879)
101 PRK14510 putative bifunctional 84.9 2.4 5.3E-05 48.4 7.4 59 76-135 191-267 (1221)
102 TIGR02100 glgX_debranch glycog 84.6 2.1 4.7E-05 45.9 6.5 58 77-135 189-265 (688)
103 PF07488 Glyco_hydro_67M: Glyc 82.5 12 0.00027 35.4 9.7 129 70-235 55-188 (328)
104 COG1523 PulA Type II secretory 81.5 3.8 8.2E-05 43.7 6.7 57 78-135 206-285 (697)
105 COG0366 AmyA Glycosidases [Car 81.2 4.7 0.0001 41.3 7.3 66 70-135 27-97 (505)
106 PRK14507 putative bifunctional 81.0 5.3 0.00011 46.8 8.1 67 70-136 756-828 (1693)
107 PF09370 TIM-br_sig_trns: TIM- 80.5 5.8 0.00013 36.9 6.8 60 72-136 95-158 (268)
108 PF10566 Glyco_hydro_97: Glyco 80.0 2.9 6.2E-05 39.4 4.7 66 74-153 108-173 (273)
109 PF05089 NAGLU: Alpha-N-acetyl 79.8 14 0.00031 35.6 9.4 157 69-242 16-216 (333)
110 PF07555 NAGidase: beta-N-acet 79.7 24 0.00052 33.9 11.0 66 68-136 11-77 (306)
111 cd06547 GH85_ENGase Endo-beta- 79.2 9.6 0.00021 37.2 8.2 95 119-241 50-145 (339)
112 smart00812 Alpha_L_fucos Alpha 78.9 53 0.0011 32.7 13.5 141 72-238 81-226 (384)
113 PF02065 Melibiase: Melibiase; 76.5 86 0.0019 31.3 16.1 174 52-246 41-236 (394)
114 cd02875 GH18_chitobiase Chitob 76.2 23 0.00051 34.8 10.1 90 119-243 68-157 (358)
115 PRK13210 putative L-xylulose 5 74.1 8.1 0.00018 36.3 6.2 61 72-136 94-154 (284)
116 PRK09856 fructoselysine 3-epim 73.8 10 0.00022 35.5 6.7 61 72-136 90-150 (275)
117 PF06415 iPGM_N: BPG-independe 73.4 35 0.00075 31.1 9.6 77 47-136 26-102 (223)
118 PRK00042 tpiA triosephosphate 73.4 33 0.00073 31.9 9.8 50 78-137 79-128 (250)
119 KOG4701 Chitinase [Cell wall/m 73.4 97 0.0021 30.5 13.9 87 275-372 205-293 (568)
120 COG3623 SgaU Putative L-xylulo 73.2 68 0.0015 29.4 11.2 153 71-244 95-257 (287)
121 PRK13398 3-deoxy-7-phosphohept 72.8 49 0.0011 31.1 10.9 62 70-137 39-100 (266)
122 KOG2233 Alpha-N-acetylglucosam 72.6 22 0.00047 36.0 8.6 162 70-243 76-281 (666)
123 PRK14565 triosephosphate isome 72.5 18 0.00039 33.4 7.7 50 78-137 78-127 (237)
124 TIGR01370 cysRS possible cyste 72.2 89 0.0019 30.1 12.7 68 168-242 142-211 (315)
125 PF07071 DUF1341: Protein of u 71.8 11 0.00024 33.5 5.7 45 73-131 136-180 (218)
126 cd06603 GH31_GANC_GANAB_alpha 71.3 1E+02 0.0023 29.9 15.5 129 70-211 22-165 (339)
127 cd06569 GH20_Sm-chitobiase-lik 71.2 17 0.00036 37.0 7.9 64 70-136 20-118 (445)
128 TIGR00542 hxl6Piso_put hexulos 70.1 12 0.00027 35.0 6.5 61 72-136 94-154 (279)
129 PF07172 GRP: Glycine rich pro 68.7 7.9 0.00017 30.2 3.9 20 1-20 1-20 (95)
130 PRK13209 L-xylulose 5-phosphat 68.5 12 0.00025 35.2 5.9 61 72-136 99-159 (283)
131 PF01261 AP_endonuc_2: Xylose 67.4 67 0.0014 28.0 10.4 130 72-238 27-158 (213)
132 KOG0470 1,4-alpha-glucan branc 66.0 11 0.00024 40.0 5.4 63 72-135 255-331 (757)
133 PF01261 AP_endonuc_2: Xylose 65.5 9.6 0.00021 33.6 4.4 64 71-137 70-134 (213)
134 PRK14042 pyruvate carboxylase 65.2 23 0.00049 37.4 7.6 64 51-135 80-143 (596)
135 PF14701 hDGE_amylase: glucano 64.7 23 0.00049 35.5 7.1 66 71-136 21-98 (423)
136 PF03659 Glyco_hydro_71: Glyco 64.3 50 0.0011 32.9 9.5 54 70-136 15-68 (386)
137 cd06589 GH31 The enzymes of gl 64.1 1.3E+02 0.0027 28.1 15.6 64 70-136 22-87 (265)
138 TIGR03234 OH-pyruv-isom hydrox 63.6 17 0.00037 33.5 5.9 62 72-137 84-145 (254)
139 PLN03244 alpha-amylase; Provis 63.5 1.3E+02 0.0028 32.9 12.7 123 114-241 440-583 (872)
140 TIGR03581 EF_0839 conserved hy 63.3 15 0.00033 33.0 5.0 45 72-130 135-179 (236)
141 COG5016 Pyruvate/oxaloacetate 63.0 19 0.00041 35.6 6.0 63 53-136 84-146 (472)
142 TIGR02455 TreS_stutzeri trehal 61.0 25 0.00053 37.2 6.8 62 75-136 77-151 (688)
143 PLN02429 triosephosphate isome 60.6 92 0.002 30.0 10.2 50 78-137 140-189 (315)
144 PF04914 DltD_C: DltD C-termin 59.4 50 0.0011 27.4 7.2 55 112-185 33-87 (130)
145 PRK08673 3-deoxy-7-phosphohept 59.3 69 0.0015 31.2 9.2 63 69-137 104-166 (335)
146 PRK12331 oxaloacetate decarbox 59.0 33 0.00072 34.9 7.3 69 47-136 74-144 (448)
147 cd00019 AP2Ec AP endonuclease 58.9 16 0.00036 34.2 4.9 61 71-136 84-144 (279)
148 PRK12581 oxaloacetate decarbox 58.6 39 0.00084 34.5 7.6 65 51-136 89-153 (468)
149 PRK05434 phosphoglyceromutase; 58.5 1.3E+02 0.0027 31.2 11.4 77 47-136 108-184 (507)
150 cd00311 TIM Triosephosphate is 58.1 1.6E+02 0.0034 27.3 11.7 50 78-137 77-126 (242)
151 PRK09997 hydroxypyruvate isome 57.9 27 0.00059 32.3 6.2 63 71-137 84-146 (258)
152 COG3623 SgaU Putative L-xylulo 57.2 65 0.0014 29.6 7.9 67 111-211 92-161 (287)
153 cd06542 GH18_EndoS-like Endo-b 56.0 1.7E+02 0.0036 26.9 12.2 100 114-243 50-151 (255)
154 PRK14582 pgaB outer membrane N 55.9 51 0.0011 35.3 8.3 68 70-139 70-143 (671)
155 cd02874 GH18_CFLE_spore_hydrol 55.8 45 0.00097 31.9 7.4 90 118-235 48-137 (313)
156 COG1306 Uncharacterized conser 55.5 24 0.00051 33.5 5.0 63 70-135 75-144 (400)
157 PRK13397 3-deoxy-7-phosphohept 54.1 65 0.0014 30.0 7.8 63 69-137 26-88 (250)
158 PF10731 Anophelin: Thrombin i 53.7 11 0.00025 26.2 2.0 10 6-15 6-15 (65)
159 PRK12595 bifunctional 3-deoxy- 53.2 1.1E+02 0.0024 30.2 9.6 62 70-137 130-191 (360)
160 cd06595 GH31_xylosidase_XylS-l 53.0 78 0.0017 30.1 8.5 66 70-137 23-96 (292)
161 COG0149 TpiA Triosephosphate i 52.7 2E+02 0.0043 26.8 10.8 50 78-137 81-130 (251)
162 KOG3698 Hyaluronoglucosaminida 52.5 1E+02 0.0022 32.0 9.3 84 46-136 11-95 (891)
163 PLN02561 triosephosphate isome 52.2 2E+02 0.0044 26.8 12.6 50 78-137 81-130 (253)
164 TIGR01307 pgm_bpd_ind 2,3-bisp 52.0 1.8E+02 0.0038 30.1 11.2 77 47-136 104-180 (501)
165 PRK14040 oxaloacetate decarbox 51.9 45 0.00098 35.2 7.1 63 52-135 82-144 (593)
166 COG3661 AguA Alpha-glucuronida 51.8 1.4E+02 0.0031 29.9 9.9 61 71-136 182-242 (684)
167 PRK09856 fructoselysine 3-epim 50.5 2.1E+02 0.0045 26.5 11.6 131 73-242 48-180 (275)
168 PF13199 Glyco_hydro_66: Glyco 50.4 46 0.001 34.8 6.8 66 70-135 116-190 (559)
169 cd07948 DRE_TIM_HCS Saccharomy 50.3 32 0.00069 32.2 5.2 59 76-137 75-134 (262)
170 KOG0471 Alpha-amylase [Carbohy 49.8 30 0.00065 36.2 5.5 64 73-136 41-109 (545)
171 PRK00315 potassium-transportin 49.0 25 0.00054 31.2 4.0 19 109-127 91-109 (193)
172 cd06600 GH31_MGAM-like This fa 48.7 2.5E+02 0.0055 26.9 15.3 158 70-243 22-196 (317)
173 PRK12330 oxaloacetate decarbox 48.5 63 0.0014 33.3 7.4 64 51-135 81-144 (499)
174 KOG1066 Glucosidase II catalyt 47.0 77 0.0017 33.8 7.6 37 168-214 479-516 (915)
175 PTZ00333 triosephosphate isome 46.9 2.5E+02 0.0053 26.2 11.3 50 78-137 82-131 (255)
176 PRK01060 endonuclease IV; Prov 46.6 1.4E+02 0.003 27.8 9.2 57 73-137 13-70 (281)
177 COG3280 TreY Maltooligosyl tre 45.8 1E+02 0.0022 33.2 8.3 71 71-143 18-96 (889)
178 PF10566 Glyco_hydro_97: Glyco 45.0 79 0.0017 29.8 6.9 64 70-137 30-95 (273)
179 smart00636 Glyco_18 Glycosyl h 44.9 2E+02 0.0043 27.6 10.1 98 116-243 53-154 (334)
180 COG5564 Predicted TIM-barrel e 44.9 1.2E+02 0.0026 27.5 7.6 121 72-242 101-225 (276)
181 TIGR03849 arch_ComA phosphosul 44.8 84 0.0018 29.0 6.9 51 72-136 71-121 (237)
182 cd07939 DRE_TIM_NifV Streptomy 44.7 40 0.00086 31.4 5.0 60 75-136 72-131 (259)
183 cd07945 DRE_TIM_CMS Leptospira 43.3 42 0.00091 31.8 4.9 61 75-137 77-137 (280)
184 PF03644 Glyco_hydro_85: Glyco 43.2 53 0.0012 31.6 5.7 94 119-241 46-140 (311)
185 PRK10894 lipopolysaccharide tr 43.0 67 0.0015 28.1 5.9 26 30-55 25-52 (180)
186 COG2876 AroA 3-deoxy-D-arabino 42.7 2.9E+02 0.0063 25.9 12.2 63 69-137 56-118 (286)
187 TIGR01626 ytfJ_HI0045 conserve 42.2 75 0.0016 28.1 6.0 65 20-88 13-91 (184)
188 PF15284 PAGK: Phage-encoded v 42.1 45 0.00097 23.5 3.5 13 3-15 1-13 (61)
189 cd06602 GH31_MGAM_SI_GAA This 42.0 3.4E+02 0.0073 26.4 14.4 159 70-243 22-200 (339)
190 TIGR01361 DAHP_synth_Bsub phos 42.0 92 0.002 29.1 6.9 76 47-137 23-98 (260)
191 PF02679 ComA: (2R)-phospho-3- 41.7 61 0.0013 30.0 5.5 51 72-136 84-134 (244)
192 COG3142 CutC Uncharacterized p 41.7 62 0.0013 29.5 5.4 65 51-137 58-122 (241)
193 cd07937 DRE_TIM_PC_TC_5S Pyruv 41.5 84 0.0018 29.6 6.7 49 72-136 91-139 (275)
194 PRK09282 pyruvate carboxylase 41.5 98 0.0021 32.7 7.7 69 47-136 74-144 (592)
195 PRK12677 xylose isomerase; Pro 41.3 55 0.0012 32.5 5.6 65 72-136 114-180 (384)
196 KOG2499 Beta-N-acetylhexosamin 41.0 72 0.0016 32.4 6.2 65 71-136 197-271 (542)
197 PRK13347 coproporphyrinogen II 39.7 3.6E+02 0.0079 27.3 11.4 59 74-136 151-210 (453)
198 TIGR01108 oadA oxaloacetate de 39.3 99 0.0021 32.6 7.3 69 47-136 69-139 (582)
199 PRK09936 hypothetical protein; 39.2 3.5E+02 0.0075 25.8 14.1 58 70-136 36-93 (296)
200 COG3684 LacD Tagatose-1,6-bisp 38.9 52 0.0011 30.6 4.5 53 78-137 117-169 (306)
201 COG4124 ManB Beta-mannanase [C 38.6 3.9E+02 0.0084 26.2 11.7 141 194-357 174-328 (355)
202 cd02872 GH18_chitolectin_chito 38.5 2.9E+02 0.0062 26.9 10.2 103 115-243 56-159 (362)
203 TIGR00542 hxl6Piso_put hexulos 38.4 3.3E+02 0.0072 25.3 12.5 67 112-209 91-157 (279)
204 PRK14582 pgaB outer membrane N 38.3 2.9E+02 0.0063 29.7 10.6 165 71-242 333-536 (671)
205 PF00121 TIM: Triosephosphate 38.3 1.8E+02 0.0039 26.9 8.2 50 78-137 77-126 (244)
206 PRK09249 coproporphyrinogen II 38.3 3.8E+02 0.0083 27.2 11.4 59 74-136 150-209 (453)
207 cd06593 GH31_xylosidase_YicI Y 38.1 60 0.0013 31.0 5.2 65 70-136 22-87 (308)
208 cd07941 DRE_TIM_LeuA3 Desulfob 37.9 65 0.0014 30.3 5.3 58 76-135 82-139 (273)
209 cd07944 DRE_TIM_HOA_like 4-hyd 37.7 73 0.0016 29.9 5.6 47 75-137 85-131 (266)
210 PRK05692 hydroxymethylglutaryl 37.5 65 0.0014 30.6 5.3 60 75-136 82-141 (287)
211 COG3525 Chb N-acetyl-beta-hexo 37.2 1.5E+02 0.0033 31.5 8.0 84 46-136 256-367 (732)
212 PRK12399 tagatose 1,6-diphosph 36.9 59 0.0013 31.3 4.7 55 77-137 110-164 (324)
213 PLN02692 alpha-galactosidase 36.8 2.4E+02 0.0051 28.4 9.1 82 47-135 50-141 (412)
214 PF14883 GHL13: Hypothetical g 36.7 3.8E+02 0.0082 25.5 12.1 157 71-237 16-186 (294)
215 PRK06294 coproporphyrinogen II 36.7 4.2E+02 0.0091 26.0 12.3 59 74-136 102-161 (370)
216 PRK14001 potassium-transportin 36.4 52 0.0011 29.1 4.0 19 109-127 90-108 (189)
217 TIGR03471 HpnJ hopanoid biosyn 36.1 80 0.0017 32.3 6.0 58 75-136 287-344 (472)
218 PF02057 Glyco_hydro_59: Glyco 35.2 93 0.002 33.1 6.3 122 199-374 173-295 (669)
219 PRK09057 coproporphyrinogen II 35.0 4.5E+02 0.0099 25.9 12.1 59 74-136 103-161 (380)
220 PRK05628 coproporphyrinogen II 34.5 4.5E+02 0.0099 25.8 12.2 59 74-136 107-166 (375)
221 TIGR01235 pyruv_carbox pyruvat 33.9 99 0.0022 35.5 6.7 68 48-136 604-673 (1143)
222 smart00481 POLIIIAc DNA polyme 33.8 1.2E+02 0.0027 21.2 5.1 46 73-135 16-61 (67)
223 PLN02746 hydroxymethylglutaryl 33.5 77 0.0017 31.0 5.1 60 75-136 124-183 (347)
224 COG0469 PykF Pyruvate kinase [ 33.2 1.2E+02 0.0025 31.1 6.5 50 74-135 19-68 (477)
225 COG0276 HemH Protoheme ferro-l 33.2 4.6E+02 0.0099 25.4 11.3 64 162-234 156-219 (320)
226 PRK13125 trpA tryptophan synth 33.1 1.1E+02 0.0024 28.2 5.9 49 73-136 89-137 (244)
227 PF05706 CDKN3: Cyclin-depende 33.1 81 0.0018 27.4 4.6 46 71-132 57-104 (168)
228 PRK09989 hypothetical protein; 32.9 1E+02 0.0022 28.4 5.8 61 72-136 85-145 (258)
229 PRK12737 gatY tagatose-bisphos 32.9 2.6E+02 0.0056 26.6 8.4 50 76-137 88-137 (284)
230 PRK04161 tagatose 1,6-diphosph 32.8 76 0.0016 30.6 4.8 56 76-137 111-166 (329)
231 TIGR02090 LEU1_arch isopropylm 32.7 78 0.0017 31.2 5.1 61 75-137 74-134 (363)
232 PRK07379 coproporphyrinogen II 32.4 5.2E+02 0.011 25.7 11.9 59 74-136 114-173 (400)
233 TIGR01232 lacD tagatose 1,6-di 32.0 81 0.0017 30.4 4.8 55 77-137 111-165 (325)
234 PRK11858 aksA trans-homoaconit 31.7 88 0.0019 31.0 5.3 60 75-136 78-137 (378)
235 PF01055 Glyco_hydro_31: Glyco 31.6 4.5E+02 0.0099 26.3 10.7 127 70-211 41-183 (441)
236 TIGR00419 tim triosephosphate 31.4 1.2E+02 0.0027 27.2 5.7 45 78-136 74-118 (205)
237 PRK08195 4-hyroxy-2-oxovalerat 31.4 1.2E+02 0.0025 29.7 6.0 46 76-137 92-137 (337)
238 PRK14041 oxaloacetate decarbox 31.3 1.8E+02 0.0039 29.8 7.5 69 47-136 73-143 (467)
239 PF14386 DUF4417: Domain of un 31.2 1.5E+02 0.0032 26.5 6.2 63 116-185 98-165 (200)
240 PF02324 Glyco_hydro_70: Glyco 31.0 1.8E+02 0.0039 31.2 7.3 64 71-136 586-668 (809)
241 PF01116 F_bP_aldolase: Fructo 30.9 3E+02 0.0065 26.1 8.5 125 77-245 88-214 (287)
242 CHL00200 trpA tryptophan synth 30.8 1.2E+02 0.0027 28.3 5.9 46 73-136 107-152 (263)
243 PRK12858 tagatose 1,6-diphosph 30.7 92 0.002 30.4 5.1 54 77-136 111-164 (340)
244 TIGR03217 4OH_2_O_val_ald 4-hy 30.6 1.3E+02 0.0028 29.3 6.2 47 75-137 90-136 (333)
245 TIGR01858 tag_bisphos_ald clas 30.5 2.9E+02 0.0063 26.2 8.3 50 76-137 86-135 (282)
246 KOG2331 Predicted glycosylhydr 30.3 1.4E+02 0.0031 29.9 6.2 89 122-241 118-208 (526)
247 PF07172 GRP: Glycine rich pro 29.9 60 0.0013 25.3 3.0 19 10-28 6-25 (95)
248 PF00332 Glyco_hydro_17: Glyco 29.8 5.1E+02 0.011 24.9 12.6 126 54-242 1-128 (310)
249 PF11395 DUF2873: Protein of u 29.7 79 0.0017 19.8 2.8 16 7-22 16-31 (43)
250 COG2968 Uncharacterized conser 29.5 3.9E+02 0.0085 24.7 8.6 98 34-131 35-148 (243)
251 PRK12738 kbaY tagatose-bisphos 29.4 3E+02 0.0064 26.2 8.2 48 78-137 90-137 (286)
252 cd04724 Tryptophan_synthase_al 29.3 1.5E+02 0.0033 27.2 6.2 45 74-136 93-137 (242)
253 PRK08599 coproporphyrinogen II 29.3 5.6E+02 0.012 25.1 11.3 59 74-136 99-158 (377)
254 PF13547 GTA_TIM: GTA TIM-barr 29.1 96 0.0021 29.3 4.6 46 199-244 19-69 (299)
255 PF02156 Glyco_hydro_26: Glyco 29.0 4.5E+02 0.0097 25.3 9.5 78 194-288 146-232 (311)
256 KOG0259 Tyrosine aminotransfer 29.0 96 0.0021 30.7 4.8 68 72-147 183-251 (447)
257 cd01299 Met_dep_hydrolase_A Me 28.5 2.7E+02 0.0059 26.6 8.2 61 70-135 118-180 (342)
258 PRK12857 fructose-1,6-bisphosp 28.3 3.2E+02 0.007 25.9 8.2 48 78-137 90-137 (284)
259 TIGR02660 nifV_homocitr homoci 28.2 93 0.002 30.6 4.8 60 75-136 75-134 (365)
260 PRK09195 gatY tagatose-bisphos 28.2 3.7E+02 0.008 25.5 8.6 50 76-137 88-137 (284)
261 cd07943 DRE_TIM_HOA 4-hydroxy- 28.1 1.7E+02 0.0036 27.2 6.3 46 75-136 88-133 (263)
262 TIGR02026 BchE magnesium-proto 27.6 1.3E+02 0.0028 31.0 5.9 58 75-136 287-344 (497)
263 PF00682 HMGL-like: HMGL-like 27.5 2.8E+02 0.006 25.1 7.6 64 71-136 66-129 (237)
264 PF11131 PhrC_PhrF: Rap-phr ex 27.5 52 0.0011 20.5 1.7 11 17-27 6-16 (37)
265 cd00946 FBP_aldolase_IIA Class 27.5 6E+02 0.013 24.9 13.4 47 79-137 117-163 (345)
266 cd06592 GH31_glucosidase_KIAA1 27.3 1.4E+02 0.0029 28.6 5.7 62 70-136 28-91 (303)
267 PLN02591 tryptophan synthase 27.2 2E+02 0.0044 26.7 6.6 46 73-136 94-139 (250)
268 PRK13999 potassium-transportin 27.1 95 0.0021 27.7 4.1 19 109-127 102-120 (201)
269 PRK13111 trpA tryptophan synth 27.0 1.8E+02 0.0039 27.2 6.2 45 73-135 105-149 (258)
270 PRK04946 hypothetical protein; 26.8 1.5E+02 0.0032 26.2 5.2 27 110-136 105-131 (181)
271 PRK13962 bifunctional phosphog 26.8 5.1E+02 0.011 27.8 10.1 49 78-136 474-522 (645)
272 PRK05835 fructose-bisphosphate 26.7 4.1E+02 0.0088 25.6 8.6 49 77-137 89-137 (307)
273 PF10035 DUF2179: Uncharacteri 26.7 71 0.0015 21.7 2.7 20 224-243 29-48 (55)
274 KOG4731 Protein predicted to b 26.6 87 0.0019 31.5 4.1 50 9-58 9-65 (512)
275 PRK14453 chloramphenicol/florf 26.6 3.1E+02 0.0066 26.9 8.0 61 71-136 263-327 (347)
276 TIGR00167 cbbA ketose-bisphosp 26.5 3.9E+02 0.0084 25.4 8.4 125 77-246 92-216 (288)
277 PRK13209 L-xylulose 5-phosphat 26.5 5.2E+02 0.011 23.9 12.0 100 72-207 57-160 (283)
278 PRK13396 3-deoxy-7-phosphohept 26.3 6.3E+02 0.014 24.8 10.8 63 69-137 112-174 (352)
279 PF00218 IGPS: Indole-3-glycer 26.2 2.3E+02 0.005 26.4 6.7 47 75-137 121-167 (254)
280 cd06601 GH31_lyase_GLase GLase 26.0 1.2E+02 0.0025 29.6 4.9 114 71-211 23-136 (332)
281 cd03174 DRE_TIM_metallolyase D 25.9 1.9E+02 0.004 26.6 6.3 60 75-136 77-136 (265)
282 cd06591 GH31_xylosidase_XylS X 25.9 1.1E+02 0.0023 29.6 4.7 63 70-136 22-87 (319)
283 PRK14003 potassium-transportin 25.8 89 0.0019 27.8 3.7 22 107-128 96-117 (194)
284 PRK12999 pyruvate carboxylase; 25.7 2.5E+02 0.0055 32.3 8.2 64 51-135 611-674 (1146)
285 PRK14581 hmsF outer membrane N 25.6 3.7E+02 0.0081 28.9 8.9 67 70-137 70-141 (672)
286 cd07938 DRE_TIM_HMGL 3-hydroxy 25.6 1.4E+02 0.0031 28.1 5.3 60 75-137 76-136 (274)
287 cd02871 GH18_chitinase_D-like 25.4 6E+02 0.013 24.2 12.4 49 115-185 60-108 (312)
288 PF13380 CoA_binding_2: CoA bi 25.4 1.9E+02 0.0041 23.2 5.3 44 70-133 64-107 (116)
289 PF02669 KdpC: K+-transporting 25.3 1.1E+02 0.0023 27.2 4.1 19 110-128 91-109 (188)
290 cd07947 DRE_TIM_Re_CS Clostrid 25.2 1.3E+02 0.0029 28.4 5.1 61 75-137 77-137 (279)
291 COG0191 Fba Fructose/tagatose 25.1 3.8E+02 0.0083 25.4 7.9 50 75-136 88-137 (286)
292 PRK14459 ribosomal RNA large s 24.8 3.1E+02 0.0066 27.2 7.6 59 71-136 296-356 (373)
293 COG2875 CobM Precorrin-4 methy 24.7 1.9E+02 0.0042 26.6 5.6 92 28-134 9-109 (254)
294 PRK14002 potassium-transportin 24.4 1E+02 0.0022 27.2 3.8 18 109-126 86-103 (186)
295 PRK08208 coproporphyrinogen II 24.3 7.4E+02 0.016 24.9 11.5 59 74-136 140-199 (430)
296 TIGR00262 trpA tryptophan synt 24.1 2.2E+02 0.0048 26.5 6.3 46 73-136 103-148 (256)
297 PF13547 GTA_TIM: GTA TIM-barr 24.0 2.7E+02 0.0059 26.4 6.6 14 321-334 206-219 (299)
298 PLN02607 1-aminocyclopropane-1 23.8 2.8E+02 0.0061 28.1 7.5 59 70-136 183-241 (447)
299 COG2108 Uncharacterized conser 23.6 1.8E+02 0.0039 28.1 5.5 50 74-136 123-172 (353)
300 TIGR00433 bioB biotin syntheta 23.5 2.2E+02 0.0048 26.7 6.4 57 75-136 123-179 (296)
301 PRK08187 pyruvate kinase; Vali 23.5 2.5E+02 0.0054 29.0 6.9 49 75-136 149-200 (493)
302 PRK04302 triosephosphate isome 23.4 2.3E+02 0.0051 25.5 6.2 48 75-136 75-122 (223)
303 PF02402 Lysis_col: Lysis prot 23.3 35 0.00077 22.3 0.5 21 4-24 3-23 (46)
304 PRK00278 trpC indole-3-glycero 23.1 2.8E+02 0.0061 25.8 6.8 45 77-137 125-169 (260)
305 PLN02538 2,3-bisphosphoglycera 22.8 5.4E+02 0.012 27.0 9.1 59 70-136 143-205 (558)
306 PRK05904 coproporphyrinogen II 22.7 1.9E+02 0.004 28.4 5.7 59 74-136 102-161 (353)
307 COG4615 PvdE ABC-type sideroph 22.4 4.7E+02 0.01 26.4 8.1 22 112-133 452-473 (546)
308 PF10766 DUF2592: Protein of u 22.3 1.7E+02 0.0037 18.7 3.4 20 2-21 2-21 (41)
309 TIGR03128 RuMP_HxlA 3-hexulose 22.3 2.6E+02 0.0057 24.6 6.3 44 77-137 68-111 (206)
310 PLN02229 alpha-galactosidase 22.3 2.7E+02 0.0059 28.1 6.8 77 53-136 64-149 (427)
311 PF00224 PK: Pyruvate kinase, 22.2 1.7E+02 0.0038 28.6 5.4 50 75-136 17-68 (348)
312 TIGR01210 conserved hypothetic 22.2 5.5E+02 0.012 24.6 8.8 57 75-136 117-176 (313)
313 PRK14567 triosephosphate isome 22.2 6.4E+02 0.014 23.5 11.9 50 78-137 78-127 (253)
314 PRK13998 potassium-transportin 22.1 1.1E+02 0.0025 26.9 3.6 16 108-123 95-110 (186)
315 TIGR01212 radical SAM protein, 22.0 6.9E+02 0.015 23.7 11.6 90 114-241 162-258 (302)
316 PRK14725 pyruvate kinase; Prov 22.0 2.7E+02 0.0059 29.5 6.8 49 75-136 155-206 (608)
317 PRK09967 putative outer membra 21.8 1.7E+02 0.0037 25.1 4.6 27 70-96 67-93 (160)
318 PLN02461 Probable pyruvate kin 21.7 2.4E+02 0.0052 29.2 6.4 50 75-136 36-87 (511)
319 PRK06739 pyruvate kinase; Vali 21.6 2.4E+02 0.0052 27.7 6.1 20 75-95 16-35 (352)
320 PRK10626 hypothetical protein; 21.6 1.8E+02 0.0039 26.8 4.9 14 171-184 148-161 (239)
321 TIGR00539 hemN_rel putative ox 21.4 2.6E+02 0.0055 27.4 6.5 59 74-136 99-158 (360)
322 PRK13254 cytochrome c-type bio 21.2 1.6E+02 0.0035 25.0 4.3 12 47-58 50-61 (148)
323 PRK05826 pyruvate kinase; Prov 21.2 2.5E+02 0.0054 28.7 6.4 50 75-136 19-70 (465)
324 cd00598 GH18_chitinase-like Th 21.2 5.5E+02 0.012 22.3 11.3 93 119-243 53-147 (210)
325 PRK15265 subtilase cytotoxin s 21.2 2.3E+02 0.005 23.4 4.9 46 12-57 6-55 (134)
326 PRK06247 pyruvate kinase; Prov 21.2 2.5E+02 0.0053 28.9 6.3 50 75-136 20-71 (476)
327 PRK13957 indole-3-glycerol-pho 21.1 2.9E+02 0.0062 25.7 6.2 47 75-137 114-160 (247)
328 PRK14000 potassium-transportin 20.9 1.2E+02 0.0027 26.7 3.6 15 109-123 97-111 (185)
329 PRK07998 gatY putative fructos 20.8 6.3E+02 0.014 24.0 8.6 47 78-136 90-136 (283)
330 cd00288 Pyruvate_Kinase Pyruva 20.7 2.6E+02 0.0057 28.7 6.5 50 75-136 17-68 (480)
331 PRK11572 copper homeostasis pr 20.7 3.7E+02 0.008 25.0 6.8 52 70-137 71-122 (248)
332 COG4724 Endo-beta-N-acetylgluc 20.6 4E+02 0.0087 26.5 7.2 32 119-153 131-162 (553)
333 PLN02623 pyruvate kinase 20.6 2.6E+02 0.0057 29.4 6.4 50 75-136 125-177 (581)
334 COG1501 Alpha-glucosidases, fa 20.5 5.2E+02 0.011 28.4 8.9 157 71-247 279-466 (772)
335 PF07423 DUF1510: Protein of u 20.5 90 0.002 28.3 2.7 25 4-28 13-37 (217)
336 smart00518 AP2Ec AP endonuclea 20.5 3.4E+02 0.0073 25.0 6.9 53 73-133 11-63 (273)
337 PRK07709 fructose-bisphosphate 20.4 6.3E+02 0.014 24.0 8.5 49 77-137 92-140 (285)
338 PF12404 DUF3663: Peptidase ; 20.0 1.5E+02 0.0033 22.1 3.4 27 382-409 25-51 (77)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.97 E-value=9.3e-30 Score=241.59 Aligned_cols=268 Identities=28% Similarity=0.469 Sum_probs=181.3
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccc-cCCC-CCChhHHHHHHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQ-VSPG-SYNEDTFKALDFVVAEA 124 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~-~~~g-~~~~~~l~~ld~~i~~a 124 (412)
+|+++.++|+|.+|... ...+++|+.++++|+|+||+++. |..++ +.++ .+++..+++||++|++|
T Consensus 4 ~G~~v~~~G~n~~w~~~--------~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~~~~~~~~~ld~~v~~a 71 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYNP--------SITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYNYDETYLARLDRIVDAA 71 (281)
T ss_dssp TSEBEEEEEEEETTSGG--------GSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTSBTHHHHHHHHHHHHHH
T ss_pred CCCeEEeeeeecccCCC--------CCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCccccHHHHHHHHHHHHHH
Confidence 89999999999875321 26789999999999999999554 33343 4444 48999999999999999
Q ss_pred HHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEee
Q 015179 125 REYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWE 204 (412)
Q Consensus 125 ~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~we 204 (412)
.++||+|||++|.. +.|.. ....+.......+.+.++|+.+++| |+++|.|++||
T Consensus 72 ~~~gi~vild~h~~----------~~w~~-------~~~~~~~~~~~~~~~~~~~~~la~~--------y~~~~~v~~~e 126 (281)
T PF00150_consen 72 QAYGIYVILDLHNA----------PGWAN-------GGDGYGNNDTAQAWFKSFWRALAKR--------YKDNPPVVGWE 126 (281)
T ss_dssp HHTT-EEEEEEEES----------TTCSS-------STSTTTTHHHHHHHHHHHHHHHHHH--------HTTTTTTEEEE
T ss_pred HhCCCeEEEEeccC----------ccccc-------cccccccchhhHHHHHhhhhhhccc--------cCCCCcEEEEE
Confidence 99999999999963 11210 0011222355677889999999999 99999999999
Q ss_pred eccCCCCCCCC------ChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCc
Q 015179 205 LMNEARCPTDP------SGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDV 278 (412)
Q Consensus 205 l~NEp~~~~~~------~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~i 278 (412)
|+|||...... ..+.+.+|+++++++||+++|+++|++++.++........ ...| ......
T Consensus 127 l~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~-~~~P------------~~~~~~ 193 (281)
T PF00150_consen 127 LWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVGGGGWGADPDGAA-ADNP------------NDADNN 193 (281)
T ss_dssp SSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHH-HHST------------TTTTTS
T ss_pred ecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecCCCccccccchhh-hcCc------------ccccCc
Confidence 99999986432 1256899999999999999999999998643321100000 0001 112345
Q ss_pred ceEeeecCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 015179 279 DFATIHIYPEQWLPPGNT-SDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDC 357 (412)
Q Consensus 279 Dv~s~H~Y~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~ 357 (412)
+++++|.|.+.-...... ............+......+.+ .++||+|||||.....+. ...++...+++.+.+
T Consensus 194 ~~~~~H~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~pv~~gE~G~~~~~~~----~~~~~~~~~~~~~~~- 267 (281)
T PF00150_consen 194 DVYSFHFYDPYDFSDQWNPGNWGDASALESSFRAALNWAKK-NGKPVVVGEFGWSNNDGN----GSTDYADAWLDYLEQ- 267 (281)
T ss_dssp EEEEEEEETTTCHHTTTSTCSHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEESSTTTSC----HHHHHHHHHHHHHHH-
T ss_pred eeEEeeEeCCCCcCCccccccchhhhHHHHHHHHHHHHHHH-cCCeEEEeCcCCcCCCCC----cCHHHHHHHHHHHHH-
Confidence 799999999532110000 1112223344455666556655 799999999999865421 122333333433322
Q ss_pred hhcCCCcccccccccccc
Q 015179 358 AKSKGPCGGGLFWQLMTQ 375 (412)
Q Consensus 358 ~~~~~~~~G~~~W~~~~~ 375 (412)
..+||++|+|+++
T Consensus 268 -----~~~g~~~W~~~~~ 280 (281)
T PF00150_consen 268 -----NGIGWIYWSWKPN 280 (281)
T ss_dssp -----TTCEEEECEESSS
T ss_pred -----CCCeEEEEecCCC
Confidence 2689999999875
No 2
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.93 E-value=2.6e-23 Score=217.38 Aligned_cols=289 Identities=18% Similarity=0.266 Sum_probs=185.6
Q ss_pred CCC--EEecCCcEEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCCh
Q 015179 34 QEF--AQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNE 111 (412)
Q Consensus 34 ~~~--v~v~g~~l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~ 111 (412)
-|| |+++++.|++||+|++++|+|.+..........+.+.+.++|+.||++|+|+||+..+ +. +
T Consensus 273 ~GfR~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~sh~-----p~--------~- 338 (604)
T PRK10150 273 FGIRSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTSHY-----PY--------S- 338 (604)
T ss_pred eEEEEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEeccC-----CC--------C-
Confidence 355 7788889999999999999998654322111235678899999999999999999322 10 2
Q ss_pred hHHHHHHHHHHHHHHcCCEEEEecccC--CccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccc
Q 015179 112 DTFKALDFVVAEAREYGVYVILSLVNN--FKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSI 189 (412)
Q Consensus 112 ~~l~~ld~~i~~a~~~Gi~vil~l~~~--w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~ 189 (412)
++++++|+++||+|+-++... +...+.. + .+. . .....-.....+|+..+.+.+.++.+++|
T Consensus 339 ------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~--~-~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~mv~r---- 402 (604)
T PRK10150 339 ------EEMLDLADRHGIVVIDETPAVGLNLSFGAG--L-EAG--N-KPKETYSEEAVNGETQQAHLQAIRELIAR---- 402 (604)
T ss_pred ------HHHHHHHHhcCcEEEEeccccccccccccc--c-ccc--c-cccccccccccchhHHHHHHHHHHHHHHh----
Confidence 278999999999999987521 0000000 0 000 0 00000000112467888899999999999
Q ss_pred ccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCcc
Q 015179 190 TGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDF 269 (412)
Q Consensus 190 ~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~ 269 (412)
++|||+|++|.++||+... .+....+++++.+.+|++||+++|+.+..... . +. .+
T Consensus 403 ----~~NHPSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~-~---------~~-----~~- 458 (604)
T PRK10150 403 ----DKNHPSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVNVMFA-T---------PD-----TD- 458 (604)
T ss_pred ----ccCCceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEecccC-C---------cc-----cc-
Confidence 9999999999999998642 23456889999999999999999998642110 0 00 00
Q ss_pred ccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHH-hhhcCCCcEEEEecCCCCCC-------CCCChH
Q 015179 270 ITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQD-SDSILKKPILIGEFGKSYKY-------PGYSEQ 341 (412)
Q Consensus 270 ~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~gkPv~igE~G~~~~~-------~g~~~~ 341 (412)
...+.+||+++|.|.. |... ....+.... .+...+.. .+. .+||++++|||..... ...+++
T Consensus 459 ---~~~~~~Dv~~~N~Y~~-wy~~-~~~~~~~~~----~~~~~~~~~~~~-~~kP~~isEyg~~~~~~~h~~~~~~~~ee 528 (604)
T PRK10150 459 ---TVSDLVDVLCLNRYYG-WYVD-SGDLETAEK----VLEKELLAWQEK-LHKPIIITEYGADTLAGLHSMYDDMWSEE 528 (604)
T ss_pred ---cccCcccEEEEcccce-ecCC-CCCHHHHHH----HHHHHHHHHHHh-cCCCEEEEccCCccccccccCCCCCCCHH
Confidence 1124579999999875 3321 111211111 22222222 222 4899999999965431 123678
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcccccccccccc----Ccccc-CCCcEEEeCC
Q 015179 342 KRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQ----GMTNF-GDGYEVVLES 390 (412)
Q Consensus 342 ~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~----g~~~~-~~gy~i~~~~ 390 (412)
.++.+++..++.+.+. ...+|.+.|++.|. |...+ ++..+|+..+
T Consensus 529 ~q~~~~~~~~~~~~~~----p~~~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~~d 578 (604)
T PRK10150 529 YQCAFLDMYHRVFDRV----PAVVGEQVWNFADFATSQGILRVGGNKKGIFTRD 578 (604)
T ss_pred HHHHHHHHHHHHHhcC----CceEEEEEEeeeccCCCCCCcccCCCcceeEcCC
Confidence 8888888877665432 45899999999983 32222 2457777653
No 3
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=8e-23 Score=195.41 Aligned_cols=271 Identities=23% Similarity=0.349 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhH-HHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhh
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDT-FKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVE 150 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~-l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~ 150 (412)
+.++++++.++.+|++.+|+|.+. |. ...+..|.-+... +.+++.+++.|..++|++++++...|...||.+-+..
T Consensus 26 ~ei~~dle~a~~vg~k~lR~fiLD-gE--dc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ip 102 (587)
T COG3934 26 REIKADLEPAGFVGVKDLRLFILD-GE--DCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIP 102 (587)
T ss_pred hhhhcccccccCccceeEEEEEec-Cc--chhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEee
Confidence 578999999999999999998543 32 1223334444444 8999999999999999999999999989999877777
Q ss_pred hHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHH
Q 015179 151 WARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAH 230 (412)
Q Consensus 151 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~ 230 (412)
|.. + +++++++.|+..+.-+++|+..+|+- ||.||+|++|++-|||-+....+...+.+|..+|+..
T Consensus 103 wag--~---~~pdn~iyD~k~~~~~kkyvedlVk~--------yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~emy~y 169 (587)
T COG3934 103 WAG--E---QSPDNVIYDPKFRGPGKKYVEDLVKP--------YKLDPTIAGWALRNEPLVEAPISVNNFWDWSGEMYAY 169 (587)
T ss_pred cCC--C---CCccccccchhhcccHHHHHHHHhhh--------hccChHHHHHHhcCCccccccCChhHHHHHHHHHHHH
Confidence 752 1 34567777899999999999999997 9999999999999998776555678899999999999
Q ss_pred HHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHH
Q 015179 231 VKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQ 310 (412)
Q Consensus 231 Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~ 310 (412)
||.+||+|+|.+|..++. +..+.| + .....+|+.++|.|+. |+. +. ....-..|..
T Consensus 170 iK~ldd~hlvsvGD~~sp------~~~~~p--------y---N~r~~vDya~~hLY~h-yd~----sl--~~r~s~~yg~ 225 (587)
T COG3934 170 IKWLDDGHLVSVGDPASP------WPQYAP--------Y---NARFYVDYAANHLYRH-YDT----SL--VSRVSTVYGK 225 (587)
T ss_pred hhccCCCCeeecCCcCCc------ccccCC--------c---ccceeeccccchhhhh-ccC----Ch--hheeeeeecc
Confidence 999999999999975431 001111 1 1123579999999984 432 11 0001112344
Q ss_pred HHHHHhhhcCC-CcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCc------cccC--
Q 015179 311 AHIQDSDSILK-KPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGM------TNFG-- 381 (412)
Q Consensus 311 ~~~~~~~~~~g-kPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~------~~~~-- 381 (412)
.+++..+. .| +||++.|||++...+. +..++.+ .+... .+.. + +-|.++|++.+.+. ..|.
T Consensus 226 ~~l~i~~~-~g~~pV~leefGfsta~g~--e~s~ayf--iw~~l---al~~-g-gdGaLiwclsdf~~gsdd~ey~w~p~ 295 (587)
T COG3934 226 PYLDIPTI-MGWQPVNLEEFGFSTAFGQ--ENSPAYF--IWIRL---ALDT-G-GDGALIWCLSDFHLGSDDSEYTWGPM 295 (587)
T ss_pred hhhccchh-cccceeeccccCCcccccc--cccchhh--hhhhh---HHhh-c-CCceEEEEecCCccCCCCCCCccccc
Confidence 45555555 67 9999999999998642 1111111 11111 1111 2 57999999998652 2342
Q ss_pred -CCcEEEeCCCc
Q 015179 382 -DGYEVVLESSP 392 (412)
Q Consensus 382 -~gy~i~~~~~~ 392 (412)
.+|+|+.+|.|
T Consensus 296 el~fgiIradgp 307 (587)
T COG3934 296 ELEFGIIRADGP 307 (587)
T ss_pred cceeeeecCCCc
Confidence 26888888766
No 4
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.87 E-value=1.6e-20 Score=179.96 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=111.8
Q ss_pred EEecCCcEEECCEEEEEeeeeccccc-ccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH
Q 015179 37 AQTNGSHFAVNGKPLYLNGFNAYWML-YYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK 115 (412)
Q Consensus 37 v~v~g~~l~~dG~~~~~~GvN~~~~~-~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 115 (412)
|+|+++.|++||||++++|+|.+... ..+. ..+.+.++++|..||++|+|+||++... . +
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~-a~~~~~~~~d~~l~k~~G~N~iR~~h~p-----~--------~----- 61 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGR-AMPDEAMERDLELMKEMGFNAIRTHHYP-----P--------S----- 61 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT----HHHHHHHHHHHHHTT-SEEEETTS---------------S-----
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccc-cCCHHHHHHHHHHHHhcCcceEEccccc-----C--------c-----
Confidence 68999999999999999999986532 2222 2356899999999999999999994322 0 2
Q ss_pred HHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccccc
Q 015179 116 ALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYK 195 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~ 195 (412)
++++++|+++||.|+.++... ..+. |.. .+ .......+++..+.+.+.++.+++| ++
T Consensus 62 --~~~~~~cD~~GilV~~e~~~~--~~~~------~~~-~~----~~~~~~~~~~~~~~~~~~~~~~v~~--------~~ 118 (298)
T PF02836_consen 62 --PRFYDLCDELGILVWQEIPLE--GHGS------WQD-FG----NCNYDADDPEFRENAEQELREMVRR--------DR 118 (298)
T ss_dssp --HHHHHHHHHHT-EEEEE-S-B--SCTS------SSS-TS----CTSCTTTSGGHHHHHHHHHHHHHHH--------HT
T ss_pred --HHHHHHHhhcCCEEEEecccc--ccCc------ccc-CC----ccccCCCCHHHHHHHHHHHHHHHHc--------Cc
Confidence 278899999999999998631 0110 100 00 0011234688888899999999999 99
Q ss_pred CCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEecc
Q 015179 196 DDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGL 244 (412)
Q Consensus 196 ~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~ 244 (412)
|||+|++|.+.||+ ....+++++.+.+|++||+++|+..+
T Consensus 119 NHPSIi~W~~gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~ 158 (298)
T PF02836_consen 119 NHPSIIMWSLGNES---------DYREFLKELYDLVKKLDPTRPVTYAS 158 (298)
T ss_dssp T-TTEEEEEEEESS---------HHHHHHHHHHHHHHHH-TTSEEEEET
T ss_pred CcCchheeecCccC---------ccccchhHHHHHHHhcCCCCceeecc
Confidence 99999999999999 24677899999999999999998764
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.82 E-value=3.4e-19 Score=176.09 Aligned_cols=285 Identities=21% Similarity=0.295 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVE 150 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~ 150 (412)
++.+++||+.|+++|+|+||+..|. |..+||.+|+|| |+.||++|+.|.++||+|+|.+... . .|.
T Consensus 9 ~e~~~~d~~~m~~~G~n~vri~~~~---W~~lEP~eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~-----~---~P~ 74 (374)
T PF02449_consen 9 EEEWEEDLRLMKEAGFNTVRIGEFS---WSWLEPEEGQYD---FSWLDRVLDLAAKHGIKVILGTPTA-----A---PPA 74 (374)
T ss_dssp CCHHHHHHHHHHHHT-SEEEE-CCE---HHHH-SBTTB------HHHHHHHHHHHCTT-EEEEEECTT-----T---S-H
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEec---hhhccCCCCeee---cHHHHHHHHHHHhccCeEEEEeccc-----c---ccc
Confidence 4699999999999999999986665 778899999998 7889999999999999999987531 1 235
Q ss_pred hHHh----------hCCC---CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC---
Q 015179 151 WARE----------RGQS---LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD--- 214 (412)
Q Consensus 151 w~~~----------~g~~---~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~--- 214 (412)
|..+ .|.. .......+.+|..++...++++.+++| |+++|+|++|+|.|||....+
T Consensus 75 Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~--------y~~~p~vi~~~i~NE~~~~~~~~~ 146 (374)
T PF02449_consen 75 WLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAER--------YGDHPAVIGWQIDNEPGYHRCYSP 146 (374)
T ss_dssp HHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHH--------HTTTTTEEEEEECCSTTCTS--SH
T ss_pred chhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhh--------ccccceEEEEEeccccCcCcCCCh
Confidence 5432 1110 011123455788999999999999999 999999999999999976211
Q ss_pred -----------------------------------------C---C---------------hhHHHHHHHHHHHHHHhcC
Q 015179 215 -----------------------------------------P---S---------------GTLLQEWIKEMAAHVKSID 235 (412)
Q Consensus 215 -----------------------------------------~---~---------------~~~~~~~~~~~~~~Ir~~d 235 (412)
| . .+...++++.+.+.||+.+
T Consensus 147 ~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~~~ 226 (374)
T PF02449_consen 147 ACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIREYD 226 (374)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 0 0235666788899999999
Q ss_pred CCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCC-CCCCCCCChHHHHHHHHHHHHHHHH
Q 015179 236 NHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQ-WLPPGNTSDEIQLAFVNRWIQAHIQ 314 (412)
Q Consensus 236 p~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~-~~~~~~~~~~~~~~~~~~~i~~~~~ 314 (412)
|+++|++...+.. ..+.|+.+ ....+|+++++.|+.. ... .........+..+.++
T Consensus 227 p~~~vt~n~~~~~---------------~~~~d~~~--~a~~~D~~~~d~Y~~~~~~~--~~~~~~~~a~~~dl~R---- 283 (374)
T PF02449_consen 227 PDHPVTTNFMGSW---------------FNGIDYFK--WAKYLDVVSWDSYPDGSFDF--YDDDPYSLAFNHDLMR---- 283 (374)
T ss_dssp TT-EEE-EE-TT------------------SS-HHH--HGGGSSSEEEEE-HHHHHTT--TT--TTHHHHHHHHHH----
T ss_pred CCceEEeCccccc---------------cCcCCHHH--HHhhCCcceeccccCcccCC--CCCCHHHHHHHHHHHH----
Confidence 9999996532210 01223322 1355799999999871 000 0000111122111121
Q ss_pred HhhhcCCCcEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCCcEEEeCCC-c
Q 015179 315 DSDSILKKPILIGEFGKSYKYPG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYEVVLESS-P 392 (412)
Q Consensus 315 ~~~~~~gkPv~igE~G~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~gy~i~~~~~-~ 392 (412)
..+ .+||++|.|.-......+ .....+...++... +..... | ..|.++|+|.......-.-.++|+.-++ +
T Consensus 284 -~~~-~~kpf~v~E~~~g~~~~~~~~~~~~pg~~~~~~---~~~~A~-G-a~~i~~~~wr~~~~g~E~~~~g~~~~dg~~ 356 (374)
T PF02449_consen 284 -SLA-KGKPFWVMEQQPGPVNWRPYNRPPRPGELRLWS---WQAIAH-G-ADGILFWQWRQSRFGAEQFHGGLVDHDGRE 356 (374)
T ss_dssp -HHT-TT--EEEEEE--S--SSSSS-----TTHHHHHH---HHHHHT-T--S-EEEC-SB--SSSTTTTS--SB-TTS--
T ss_pred -hhc-CCCceEeecCCCCCCCCccCCCCCCCCHHHHHH---HHHHHH-h-CCeeEeeeccCCCCCchhhhcccCCccCCC
Confidence 112 699999999954422111 11111111222211 122222 3 6799999998753322223578877766 3
Q ss_pred --cHHHHHHHHHHHHhh
Q 015179 393 --STANIINQQSLRLAV 407 (412)
Q Consensus 393 --~~~~~i~~~~~~~~~ 407 (412)
...+-+++.++.|++
T Consensus 357 ~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 357 PTRRYREVAQLGRELKK 373 (374)
T ss_dssp B-HHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhc
Confidence 223445555555554
No 6
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=99.82 E-value=1.9e-18 Score=188.31 Aligned_cols=240 Identities=17% Similarity=0.224 Sum_probs=155.8
Q ss_pred EEecCCcEEECCEEEEEeeeeccccc-ccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH
Q 015179 37 AQTNGSHFAVNGKPLYLNGFNAYWML-YYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK 115 (412)
Q Consensus 37 v~v~g~~l~~dG~~~~~~GvN~~~~~-~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 115 (412)
|+++++.|++||+|++++|+|.+... ..+. ..+.+.++++|+.||++|+|+||++.+. . +
T Consensus 336 iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~-a~t~e~~~~di~lmK~~g~NaVR~sHyP-----~--------~----- 396 (1027)
T PRK09525 336 VEIENGLLKLNGKPLLIRGVNRHEHHPEHGQ-VMDEETMVQDILLMKQHNFNAVRCSHYP-----N--------H----- 396 (1027)
T ss_pred EEEECCEEEECCEEEEEEEeEccccCcccCc-cCCHHHHHHHHHHHHHCCCCEEEecCCC-----C--------C-----
Confidence 66788889999999999999986432 2221 2357899999999999999999994321 1 1
Q ss_pred HHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccccc
Q 015179 116 ALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYK 195 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~ 195 (412)
++++++|+++||+|+-++... ..|-.+ ......+++..+.+.+.++.+++| .+
T Consensus 397 --p~fydlcDe~GilV~dE~~~e--~hg~~~---------------~~~~~~dp~~~~~~~~~~~~mV~R--------dr 449 (1027)
T PRK09525 397 --PLWYELCDRYGLYVVDEANIE--THGMVP---------------MNRLSDDPRWLPAMSERVTRMVQR--------DR 449 (1027)
T ss_pred --HHHHHHHHHcCCEEEEecCcc--ccCCcc---------------ccCCCCCHHHHHHHHHHHHHHHHh--------CC
Confidence 267899999999999886421 001000 001233678888899999999999 99
Q ss_pred CCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCC
Q 015179 196 DDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQI 275 (412)
Q Consensus 196 ~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~ 275 (412)
|||+|++|.+.||+... .. .++|+..+|++||+++|.....+. . .
T Consensus 450 NHPSIi~WSlgNE~~~g-----~~----~~~l~~~~k~~DptRpV~y~~~~~-~-------------------------~ 494 (1027)
T PRK09525 450 NHPSIIIWSLGNESGHG-----AN----HDALYRWIKSNDPSRPVQYEGGGA-D-------------------------T 494 (1027)
T ss_pred CCCEEEEEeCccCCCcC-----hh----HHHHHHHHHhhCCCCcEEECCCCC-C-------------------------C
Confidence 99999999999998542 11 467889999999999998742110 0 0
Q ss_pred CCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHH
Q 015179 276 PDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIY 355 (412)
Q Consensus 276 ~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~ 355 (412)
...|+++..+-...+........+ .. +....... . .+||+++.|||-....+ .. .+++.++.+.
T Consensus 495 ~~~Dv~~~my~~~~~~~~~~~~~~---~~----~~~~~~~~-~-~~kP~i~cEY~Hamgn~---~g----~l~~yw~~~~ 558 (1027)
T PRK09525 495 AATDIICPMYARVDEDQPFPAVPK---WS----IKKWISLP-G-ETRPLILCEYAHAMGNS---LG----GFAKYWQAFR 558 (1027)
T ss_pred CccccccCCCCCccccccccccch---HH----HHHHHhcC-C-CCCCEEEEechhcccCc---Cc----cHHHHHHHHh
Confidence 123666543222211110000000 01 22222111 1 47999999999655432 11 2455565554
Q ss_pred HhhhcCCCccccccccccccCc
Q 015179 356 DCAKSKGPCGGGLFWQLMTQGM 377 (412)
Q Consensus 356 ~~~~~~~~~~G~~~W~~~~~g~ 377 (412)
+. ....|.+.|.|.|+|.
T Consensus 559 ~~----~~~~GgfIW~w~Dqg~ 576 (1027)
T PRK09525 559 QY----PRLQGGFIWDWVDQGL 576 (1027)
T ss_pred cC----CCeeEEeeEeccCcce
Confidence 33 4589999999998754
No 7
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=99.82 E-value=2.3e-18 Score=188.00 Aligned_cols=228 Identities=18% Similarity=0.290 Sum_probs=153.3
Q ss_pred EEecCCcEEECCEEEEEeeeeccccc-ccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH
Q 015179 37 AQTNGSHFAVNGKPLYLNGFNAYWML-YYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK 115 (412)
Q Consensus 37 v~v~g~~l~~dG~~~~~~GvN~~~~~-~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 115 (412)
|+++++.|++||+|++++|+|.+... ..+. ..+.+.++++|+.||++|+|+||++.+. . +
T Consensus 320 iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~-a~~~e~~~~dl~lmK~~g~NavR~sHyP-----~--------~----- 380 (1021)
T PRK10340 320 IKVRDGLFWINNRYVKLHGVNRHDNDHRKGR-AVGMDRVEKDIQLMKQHNINSVRTAHYP-----N--------D----- 380 (1021)
T ss_pred EEEECCEEEECCEEEEEEEeecCCCCcccCc-cCCHHHHHHHHHHHHHCCCCEEEecCCC-----C--------C-----
Confidence 67788889999999999999986432 2222 2356789999999999999999995322 1 1
Q ss_pred HHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccccc
Q 015179 116 ALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYK 195 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~ 195 (412)
.+++++|+++||+|+-+..-.+..+.. .+ .......+|...+.+.+.++.+++| ++
T Consensus 381 --~~fydlcDe~GllV~dE~~~e~~g~~~----------~~----~~~~~~~~p~~~~~~~~~~~~mV~R--------dr 436 (1021)
T PRK10340 381 --PRFYELCDIYGLFVMAETDVESHGFAN----------VG----DISRITDDPQWEKVYVDRIVRHIHA--------QK 436 (1021)
T ss_pred --HHHHHHHHHCCCEEEECCcccccCccc----------cc----ccccccCCHHHHHHHHHHHHHHHHh--------CC
Confidence 278899999999999986311000000 00 0001224577778888899999999 99
Q ss_pred CCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCC
Q 015179 196 DDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQI 275 (412)
Q Consensus 196 ~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~ 275 (412)
|||+|++|.++||... +. -+++|++.+|++||+++|+..... ..
T Consensus 437 NHPSIi~WslGNE~~~-----g~----~~~~~~~~~k~~DptR~v~~~~~~---------------------------~~ 480 (1021)
T PRK10340 437 NHPSIIIWSLGNESGY-----GC----NIRAMYHAAKALDDTRLVHYEEDR---------------------------DA 480 (1021)
T ss_pred CCCEEEEEECccCccc-----cH----HHHHHHHHHHHhCCCceEEeCCCc---------------------------Cc
Confidence 9999999999999853 22 247899999999999999864210 01
Q ss_pred CCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCC-CCCChHHHHHHHHHHHHHH
Q 015179 276 PDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKY-PGYSEQKRNSYFQKVYDAI 354 (412)
Q Consensus 276 ~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~-~g~~~~~r~~~~~~~~~~~ 354 (412)
...|+++. +|+.. + .+.++ .+...+||+++.|++..... +|. +++.++.+
T Consensus 481 ~~~Dv~~~-~Y~~~---------~--------~~~~~---~~~~~~kP~i~~Ey~hamgn~~g~--------~~~yw~~~ 531 (1021)
T PRK10340 481 EVVDVIST-MYTRV---------E--------LMNEF---GEYPHPKPRILCEYAHAMGNGPGG--------LTEYQNVF 531 (1021)
T ss_pred cccceecc-ccCCH---------H--------HHHHH---HhCCCCCcEEEEchHhccCCCCCC--------HHHHHHHH
Confidence 23588885 34421 0 12221 11114799999999865442 221 23334444
Q ss_pred HHhhhcCCCccccccccccccC
Q 015179 355 YDCAKSKGPCGGGLFWQLMTQG 376 (412)
Q Consensus 355 ~~~~~~~~~~~G~~~W~~~~~g 376 (412)
.+. ....|-+.|.|.|.|
T Consensus 532 ~~~----p~l~GgfiW~~~D~~ 549 (1021)
T PRK10340 532 YKH----DCIQGHYVWEWCDHG 549 (1021)
T ss_pred HhC----CceeEEeeeecCccc
Confidence 333 458999999999964
No 8
>TIGR03356 BGL beta-galactosidase.
Probab=99.79 E-value=5.7e-18 Score=169.10 Aligned_cols=284 Identities=17% Similarity=0.286 Sum_probs=179.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++||+.|+++|+|++|+ ... |..++|. +|.+|++.++.+|++|+.|.++||.++++||. |+ .
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~-si~---Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~H-fd-------~ 119 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRF-SIA---WPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYH-WD-------L 119 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEc-ccc---hhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeecc-CC-------c
Confidence 3568999999999999999999 554 7788887 67899999999999999999999999999984 22 2
Q ss_pred hhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC--------CCh---
Q 015179 149 VEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD--------PSG--- 217 (412)
Q Consensus 149 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~--------~~~--- 217 (412)
|.|..+.| =|.+++..+.|.+|++.+++| |++. |-.|+++|||+.... +.+
T Consensus 120 P~~l~~~g--------Gw~~~~~~~~f~~ya~~~~~~--------~~d~--v~~w~t~NEp~~~~~~~y~~G~~~P~~~~ 181 (427)
T TIGR03356 120 PQALEDRG--------GWLNRDTAEWFAEYAAVVAER--------LGDR--VKHWITLNEPWCSAFLGYGLGVHAPGLRD 181 (427)
T ss_pred cHHHHhcC--------CCCChHHHHHHHHHHHHHHHH--------hCCc--CCEEEEecCcceecccchhhccCCCCCcc
Confidence 34543222 145699999999999999999 9994 667999999985321 110
Q ss_pred -h-HHHH------HHHHHHHHHHhcCCCCeEEecccc--ccCCC-CCccc-----------cC--CC---CCCC------
Q 015179 218 -T-LLQE------WIKEMAAHVKSIDNHHLLEVGLEG--FYGES-VPERQ-----------KY--NP---NNTP------ 264 (412)
Q Consensus 218 -~-~~~~------~~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~-~~~~~-----------~~--~p---~~~~------ 264 (412)
. .++. -..++++++|+..|+..|.+-... ++... .++.. .+ .| +.|.
T Consensus 182 ~~~~~~~~hnll~Aha~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~ 261 (427)
T TIGR03356 182 LRAALQAAHHLLLAHGLAVQALRANGPGAQVGIVLNLTPVYPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEY 261 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHH
Confidence 1 1111 135566788888887555432111 11110 00000 00 00 0000
Q ss_pred CCC--cccc---ccCCCCcceEeeecCCCCCCCC-----CC-----CC---hHHHHHHHHHHHHHHHHHhhhcCCC-cEE
Q 015179 265 VGT--DFIT---NNQIPDVDFATIHIYPEQWLPP-----GN-----TS---DEIQLAFVNRWIQAHIQDSDSILKK-PIL 325 (412)
Q Consensus 265 ~g~--d~~~---~~~~~~iDv~s~H~Y~~~~~~~-----~~-----~~---~~~~~~~~~~~i~~~~~~~~~~~gk-Pv~ 325 (412)
.+. .+.. ......+|++++.+|....... .. .. .+-.+......++..+....+..++ ||+
T Consensus 262 l~~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~~~L~~~~~rY~~ppi~ 341 (427)
T TIGR03356 262 LGDAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTGAGFVEVPEGVPKTAMGWEVYPEGLYDLLLRLKEDYPGPPIY 341 (427)
T ss_pred hccCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCCCCccccCCCCCcCCCCCeechHHHHHHHHHHHHhcCCCCEE
Confidence 000 0000 0011346999999998642110 00 00 0000111122344444433333676 799
Q ss_pred EEecCCCCCC---CC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCCcE
Q 015179 326 IGEFGKSYKY---PG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYE 385 (412)
Q Consensus 326 igE~G~~~~~---~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~gy~ 385 (412)
|+|.|..... .| ...+.|..|++..+..+.++...+-.+.|+++|++.|+ .+|..||.
T Consensus 342 ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn--~ew~~gy~ 403 (427)
T TIGR03356 342 ITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDN--FEWAEGYS 403 (427)
T ss_pred EeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccc--cchhcccc
Confidence 9999997532 12 23578999999999998888877777899999999998 67766643
No 9
>PLN02998 beta-glucosidase
Probab=99.76 E-value=6.9e-17 Score=163.24 Aligned_cols=284 Identities=16% Similarity=0.218 Sum_probs=177.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++|++.|+++|+|+.|+ .++ |..+.|. .|.+|+++++.++++|+.+.++||.++++|+. |+.
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRf-SIs---WsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H-~dl------- 147 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRF-SIS---WSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHH-FDL------- 147 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEe-ecc---HHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecC-CCC-------
Confidence 4578999999999999999999 655 7788775 46789999999999999999999999999984 332
Q ss_pred hhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC--------CChh-
Q 015179 149 VEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD--------PSGT- 218 (412)
Q Consensus 149 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~--------~~~~- 218 (412)
|.|..+. |+ |.+++..+.|.+|.+.+++| |++. |-.|-..|||+.... +.+.
T Consensus 148 P~~L~~~yGG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 209 (497)
T PLN02998 148 PQALEDEYGG--------WLSQEIVRDFTAYADTCFKE--------FGDR--VSHWTTINEVNVFALGGYDQGITPPARC 209 (497)
T ss_pred CHHHHHhhCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEccCcchhhhcchhhcccCCCcc
Confidence 3555432 32 55789999999999999999 9994 778999999995421 1110
Q ss_pred ----------------HHHHH------HHHHHHHHHhc---CCCCeEEecccc--ccCCC-CCccc--------cC----
Q 015179 219 ----------------LLQEW------IKEMAAHVKSI---DNHHLLEVGLEG--FYGES-VPERQ--------KY---- 258 (412)
Q Consensus 219 ----------------~~~~~------~~~~~~~Ir~~---dp~~lV~~g~~g--~~~~~-~~~~~--------~~---- 258 (412)
.++.. ..++++++|+. ++...|.+-... .+... .++.. ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f 289 (497)
T PLN02998 210 SPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWI 289 (497)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhh
Confidence 11211 23445666765 554444321111 11100 00000 00
Q ss_pred -CC---CCCC--------CCC-cccc---ccCCCCcceEeeecCCCCCCCC------CC-C---------------Ch-H
Q 015179 259 -NP---NNTP--------VGT-DFIT---NNQIPDVDFATIHIYPEQWLPP------GN-T---------------SD-E 299 (412)
Q Consensus 259 -~p---~~~~--------~g~-d~~~---~~~~~~iDv~s~H~Y~~~~~~~------~~-~---------------~~-~ 299 (412)
.| +.|. ... .+.. ......+|++++++|....... +. . .. +
T Consensus 290 ~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (497)
T PLN02998 290 LHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEMTLVGNTSIE 369 (497)
T ss_pred hhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCccccccccccccccCCCcCCC
Confidence 00 0000 000 0000 0011246999999997532210 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCc
Q 015179 300 IQLAFVNRWIQAHIQDSDSILKK-PILIGEFGKSYKYPG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGM 377 (412)
Q Consensus 300 ~~~~~~~~~i~~~~~~~~~~~gk-Pv~igE~G~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 377 (412)
..+......++..+...++..+. ||+|+|.|......| ...+.|..|++..+.++.++..++-.+.|++.|++.|+
T Consensus 370 ~~w~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~Dn-- 447 (497)
T PLN02998 370 NEYANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDV-- 447 (497)
T ss_pred CCCEEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 00011122344444433333677 699999998764322 34678999999999998888888877899999999998
Q ss_pred cccCCCcE
Q 015179 378 TNFGDGYE 385 (412)
Q Consensus 378 ~~~~~gy~ 385 (412)
.+|..||+
T Consensus 448 fEW~~Gy~ 455 (497)
T PLN02998 448 FELFGGYE 455 (497)
T ss_pred hchhcccc
Confidence 66766643
No 10
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=99.75 E-value=1.3e-16 Score=160.98 Aligned_cols=288 Identities=17% Similarity=0.234 Sum_probs=182.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS--PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
....+++|++.|+++|+|+.|+ .++ |..+.|. .+.+|++.++.++++|+.+.++||.++++|+. |+
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRf-SIs---WsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H-~d------- 138 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRM-SIA---WTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITH-FD------- 138 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEE-ecc---hhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecc-cC-------
Confidence 3568999999999999999999 655 7788876 45689999999999999999999999999984 33
Q ss_pred hhhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC----------CC
Q 015179 148 YVEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD----------PS 216 (412)
Q Consensus 148 ~~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~----------~~ 216 (412)
.|.|..+. |. |.+++..+.|.+|.+.+++| |++. |-.|-.+|||+.... +.
T Consensus 139 lP~~L~~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgdr--Vk~WiT~NEP~~~~~~~~~~~g~~~~~ 200 (478)
T PRK09593 139 CPMHLIEEYGG--------WRNRKMVGFYERLCRTLFTR--------YKGL--VKYWLTFNEINMILHAPFMGAGLYFEE 200 (478)
T ss_pred CCHHHHhhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEeecchhhhhcccccccCcccCC
Confidence 23555432 32 55789999999999999999 9994 778999999984310 11
Q ss_pred hh-----HHHHH------HHHHHHHHHhcCCCCeEEecccc--ccCCC-CCccc----------c--CCCC---CCC---
Q 015179 217 GT-----LLQEW------IKEMAAHVKSIDNHHLLEVGLEG--FYGES-VPERQ----------K--YNPN---NTP--- 264 (412)
Q Consensus 217 ~~-----~~~~~------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~-~~~~~----------~--~~p~---~~~--- 264 (412)
+. .++.. ...++.++|+..|+..|.+-... ++... .++.. . ..|- .|.
T Consensus 201 g~~~~~~~~~a~h~~llAHa~A~~~~~~~~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~fld~~~~G~YP~~~ 280 (478)
T PRK09593 201 GENKEQVKYQAAHHELVASAIATKIAHEVDPENKVGCMLAAGQYYPNTCHPEDVWAAMKEDRENYFFIDVQARGEYPNYA 280 (478)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHHHHhhhhhhhhhCCCccHHH
Confidence 10 11212 24556778887776554332111 11100 00000 0 0000 000
Q ss_pred ------CC--Ccccc----ccCCCCcceEeeecCCCCCCCC-C---C--C-------------ChHHHHHHHHHHHHHHH
Q 015179 265 ------VG--TDFIT----NNQIPDVDFATIHIYPEQWLPP-G---N--T-------------SDEIQLAFVNRWIQAHI 313 (412)
Q Consensus 265 ------~g--~d~~~----~~~~~~iDv~s~H~Y~~~~~~~-~---~--~-------------~~~~~~~~~~~~i~~~~ 313 (412)
.+ ..+.. ......+|++++.+|....... + . . ..+-.+......++..+
T Consensus 281 ~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l 360 (478)
T PRK09593 281 KKRFEREGITIEMTEEDLELLKENTVDFISFSYYSSRVASGDPKVNEKTAGNIFASLKNPYLKASEWGWQIDPLGLRITL 360 (478)
T ss_pred HHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCCCCccccccCCCcccCCCCCEECHHHHHHHH
Confidence 00 00000 0112346999999997643210 0 0 0 00000111223344444
Q ss_pred HHhhhcCCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhhh-cCCCccccccccccccCccccCCC----
Q 015179 314 QDSDSILKKPILIGEFGKSYKY----PG-YSEQKRNSYFQKVYDAIYDCAK-SKGPCGGGLFWQLMTQGMTNFGDG---- 383 (412)
Q Consensus 314 ~~~~~~~gkPv~igE~G~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~~g---- 383 (412)
....+..++||+|+|.|+.... .| ...+.|..|++..+.++.++.. .+-.+.|++.|++.|+ .+|..|
T Consensus 361 ~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn--~EW~~G~y~~ 438 (478)
T PRK09593 361 NTIWDRYQKPMFIVENGLGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDL--VSAGTGEMKK 438 (478)
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHh--hcccCCCccC
Confidence 4443337889999999998532 12 2367899999999999888774 7777899999999999 678777
Q ss_pred -cEEEeC
Q 015179 384 -YEVVLE 389 (412)
Q Consensus 384 -y~i~~~ 389 (412)
|+++.-
T Consensus 439 RfGl~~V 445 (478)
T PRK09593 439 RYGFIYV 445 (478)
T ss_pred eeceEEE
Confidence 666654
No 11
>PLN02849 beta-glucosidase
Probab=99.74 E-value=6.4e-16 Score=156.46 Aligned_cols=284 Identities=15% Similarity=0.215 Sum_probs=176.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++|++.||++|+|+.|+ .++ |..+.|. .|.+|++.++.++++|+.+.++||.++++|+. |+ .
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRf-SIs---WsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H-~d-------l 144 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRF-SIS---WSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFH-YD-------H 144 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEE-ecc---HHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecC-CC-------C
Confidence 4578999999999999999999 655 7788875 36789999999999999999999999999984 33 2
Q ss_pred hhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC--------CCh--
Q 015179 149 VEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD--------PSG-- 217 (412)
Q Consensus 149 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~--------~~~-- 217 (412)
|.|..+. |. |.+++..+.|.+|.+.+++| |++. |-.|-..|||+.... +.+
T Consensus 145 P~~L~~~yGG--------W~nr~~v~~F~~YA~~~f~~--------fgDr--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~ 206 (503)
T PLN02849 145 PQYLEDDYGG--------WINRRIIKDFTAYADVCFRE--------FGNH--VKFWTTINEANIFTIGGYNDGITPPGRC 206 (503)
T ss_pred cHHHHHhcCC--------cCCchHHHHHHHHHHHHHHH--------hcCc--CCEEEEecchhhhhhchhhhccCCCCcc
Confidence 4565442 32 56789999999999999999 9994 778999999985311 111
Q ss_pred --------------hHHHHH------HHHHHHHHHhc---CCCCeEEecccc--ccCCC-CCccc--------c-----C
Q 015179 218 --------------TLLQEW------IKEMAAHVKSI---DNHHLLEVGLEG--FYGES-VPERQ--------K-----Y 258 (412)
Q Consensus 218 --------------~~~~~~------~~~~~~~Ir~~---dp~~lV~~g~~g--~~~~~-~~~~~--------~-----~ 258 (412)
..++.. ..+++.++|+. .|+..|.+-... ++... .++.. . .
T Consensus 207 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~ 286 (503)
T PLN02849 207 SSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWML 286 (503)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 011111 23445667765 255444331111 11110 00000 0 0
Q ss_pred CC---CCCC--------CCC-cccc---ccCCCCcceEeeecCCCCCCCC----C------C----CCh--H----HHHH
Q 015179 259 NP---NNTP--------VGT-DFIT---NNQIPDVDFATIHIYPEQWLPP----G------N----TSD--E----IQLA 303 (412)
Q Consensus 259 ~p---~~~~--------~g~-d~~~---~~~~~~iDv~s~H~Y~~~~~~~----~------~----~~~--~----~~~~ 303 (412)
.| +.|. ... .+.. ......+|++++++|....... + . ... . ..+.
T Consensus 287 dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~ 366 (503)
T PLN02849 287 EPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYSDMGVSLGKFSAFEYA 366 (503)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCccccccCCCCCccCCCCCe
Confidence 00 0000 000 0000 0011246999999997532110 0 0 000 0 0001
Q ss_pred HHHHHHHHHHHHhhhcCCC-cEEEEecCCCCCC--CC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccc
Q 015179 304 FVNRWIQAHIQDSDSILKK-PILIGEFGKSYKY--PG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTN 379 (412)
Q Consensus 304 ~~~~~i~~~~~~~~~~~gk-Pv~igE~G~~~~~--~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~ 379 (412)
.....++..+....+..++ ||+|+|.|..... .+ ...+.|..|++..+.++.++..++-.+.|++.|++.|+ .+
T Consensus 367 i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~Dn--fE 444 (503)
T PLN02849 367 VAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDL--YE 444 (503)
T ss_pred EChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hc
Confidence 1122333333333322667 7999999988542 11 24678999999999998888888877899999999998 66
Q ss_pred cCCCcE
Q 015179 380 FGDGYE 385 (412)
Q Consensus 380 ~~~gy~ 385 (412)
|..||+
T Consensus 445 W~~Gy~ 450 (503)
T PLN02849 445 LLKGYE 450 (503)
T ss_pred hhcccc
Confidence 766633
No 12
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=99.73 E-value=5.4e-16 Score=156.47 Aligned_cols=282 Identities=16% Similarity=0.161 Sum_probs=178.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS--PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
....+++|++.|+++|+|+.|+ .++ |..+.|. .+.+|++.++.++++|+.|.++||.++++|+. |+
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRf-SIs---WsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H-~d------- 132 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRT-SIA---WTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSH-FE------- 132 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEe-ccc---hhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------
Confidence 3568999999999999999999 655 7788776 34589999999999999999999999999984 33
Q ss_pred hhhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC-----------C-
Q 015179 148 YVEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT-----------D- 214 (412)
Q Consensus 148 ~~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~-----------~- 214 (412)
.|.|..+. |. |.+++..+.|.+|.+.+++| |++. |-.|-..|||+... .
T Consensus 133 lP~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~~~~~~g 194 (476)
T PRK09589 133 MPYHLVTEYGG--------WRNRKLIDFFVRFAEVVFTR--------YKDK--VKYWMTFNEINNQANFSEDFAPFTNSG 194 (476)
T ss_pred CCHHHHHhcCC--------cCChHHHHHHHHHHHHHHHH--------hcCC--CCEEEEecchhhhhccccccCCccccc
Confidence 23555432 32 55789999999999999999 9984 77899999998420 0
Q ss_pred ---CChh-----HHHHH------HHHHHHHHHhcCCCCeEEecc--ccccCCC-CCcc-----------c-cCCCC---C
Q 015179 215 ---PSGT-----LLQEW------IKEMAAHVKSIDNHHLLEVGL--EGFYGES-VPER-----------Q-KYNPN---N 262 (412)
Q Consensus 215 ---~~~~-----~~~~~------~~~~~~~Ir~~dp~~lV~~g~--~g~~~~~-~~~~-----------~-~~~p~---~ 262 (412)
+.+. .++.. ..++++++|+..|+..|.+-. ..++... .++. . ...|- .
T Consensus 195 ~~~~pg~~~~~~~~~~~h~~llAha~A~~~~~~~~~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~~~~f~d~~~~G~ 274 (476)
T PRK09589 195 ILYSPGEDREQIMYQAAHYELVASALAVKTGHEINPDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHRRYWFTDVHVRGY 274 (476)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHhccceecceeCCC
Confidence 1111 11222 234567778877765443211 1111110 0000 0 00000 0
Q ss_pred CC---------CCC--cccc----ccCCCCcceEeeecCCCCCCCC----C-C---C-----------ChHHHHHHHHHH
Q 015179 263 TP---------VGT--DFIT----NNQIPDVDFATIHIYPEQWLPP----G-N---T-----------SDEIQLAFVNRW 308 (412)
Q Consensus 263 ~~---------~g~--d~~~----~~~~~~iDv~s~H~Y~~~~~~~----~-~---~-----------~~~~~~~~~~~~ 308 (412)
|. .+. .+.. ......+|++++.+|....... + . . ..+-.+......
T Consensus 275 YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~G 354 (476)
T PRK09589 275 YPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSFATKFHEDNPQLDYVETRDLVSNPYVKASEWGWQIDPAG 354 (476)
T ss_pred CcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCcccccCCCCCCCCcccccccccCCCcccCCCCCccCcHH
Confidence 00 000 0000 0112346999999998643210 0 0 0 000001112233
Q ss_pred HHHHHHHhhhcCCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhh-hcCCCccccccccccccCccccCC
Q 015179 309 IQAHIQDSDSILKKPILIGEFGKSYKY----PG-YSEQKRNSYFQKVYDAIYDCA-KSKGPCGGGLFWQLMTQGMTNFGD 382 (412)
Q Consensus 309 i~~~~~~~~~~~gkPv~igE~G~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~-~~~~~~~G~~~W~~~~~g~~~~~~ 382 (412)
++..+....+..++||+|+|.|+.... .| ...+.|..|++..+.++.++. .++-.+.|++.|++.|+ .+|..
T Consensus 355 l~~~L~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn--~Ew~~ 432 (476)
T PRK09589 355 LRYSLNWFWDHYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDL--VSAGT 432 (476)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecccccc--ccccC
Confidence 444444443337899999999998532 12 235789999999999988877 67777899999999999 67777
Q ss_pred C
Q 015179 383 G 383 (412)
Q Consensus 383 g 383 (412)
|
T Consensus 433 G 433 (476)
T PRK09589 433 G 433 (476)
T ss_pred C
Confidence 7
No 13
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=99.73 E-value=4.8e-16 Score=157.02 Aligned_cols=283 Identities=18% Similarity=0.236 Sum_probs=177.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++|++.|+++|+|+.|+ ..+ |..+.|+ .|.+|++.++.++++|+.|.++||..+++|+. |+ .
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRf-SIs---WsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 119 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRI-SIA---WSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHH-FD-------T 119 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEe-ecc---HhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecC-CC-------C
Confidence 3568999999999999999999 655 7788775 46789999999999999999999999999984 32 2
Q ss_pred hhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC--------CCCh---
Q 015179 149 VEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT--------DPSG--- 217 (412)
Q Consensus 149 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~--------~~~~--- 217 (412)
|.|..+.|. |.+++..+.|.+|.+.+++| |++ |-.|-..|||+... .+.+
T Consensus 120 P~~L~~~GG--------W~n~~~v~~F~~YA~~~~~~--------fgd---Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~ 180 (469)
T PRK13511 120 PEALHSNGD--------WLNRENIDHFVRYAEFCFEE--------FPE---VKYWTTFNEIGPIGDGQYLVGKFPPGIKY 180 (469)
T ss_pred cHHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hCC---CCEEEEccchhhhhhcchhhcccCCCCCc
Confidence 456544332 56799999999999999999 998 67899999998542 1111
Q ss_pred ---hHHHHH------HHHHHHHHHhcCCCCeEEecccc--ccCC--CCCccc-----------c--CCCC---CCC----
Q 015179 218 ---TLLQEW------IKEMAAHVKSIDNHHLLEVGLEG--FYGE--SVPERQ-----------K--YNPN---NTP---- 264 (412)
Q Consensus 218 ---~~~~~~------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~--~~~~~~-----------~--~~p~---~~~---- 264 (412)
..++.. ..+++.++|+..++..|.+-... ++.. ..++.. . ..|- .|.
T Consensus 181 ~~~~~~~~~hn~llAHa~A~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~ 260 (469)
T PRK13511 181 DLAKVFQSHHNMMVAHARAVKLFKDKGYKGEIGVVHALPTKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETM 260 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111222 24556677887766444321111 1111 011000 0 0000 000
Q ss_pred ---------CCC--cccc----ccCC--CCcceEeeecCCCCCCCC-----------CC---------------CCh---
Q 015179 265 ---------VGT--DFIT----NNQI--PDVDFATIHIYPEQWLPP-----------GN---------------TSD--- 298 (412)
Q Consensus 265 ---------~g~--d~~~----~~~~--~~iDv~s~H~Y~~~~~~~-----------~~---------------~~~--- 298 (412)
.+. .+.. .... ..+|++++.+|....... .+ ...
T Consensus 261 ~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (469)
T PRK13511 261 EGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDV 340 (469)
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCccccccCCCCccccccccccCccccccCCCC
Confidence 000 0000 0001 236999999997532110 00 000
Q ss_pred H---HHHHHHHHHHHHHHHHhhhcCCC--cEEEEecCCCCCCC----C-CChHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 015179 299 E---IQLAFVNRWIQAHIQDSDSILKK--PILIGEFGKSYKYP----G-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGL 368 (412)
Q Consensus 299 ~---~~~~~~~~~i~~~~~~~~~~~gk--Pv~igE~G~~~~~~----g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~ 368 (412)
+ -.+......+...+....+..+. ||+|+|.|+..... | ...+.|..|+++.+.++.++..++-.+.|++
T Consensus 341 ~~~~~gw~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~ 420 (469)
T PRK13511 341 PTTDWDWIIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYF 420 (469)
T ss_pred CcCCCCCeECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 0 00000112233333333322554 79999999974421 1 2356899999999999888888887889999
Q ss_pred cccccccCccccCCCcE
Q 015179 369 FWQLMTQGMTNFGDGYE 385 (412)
Q Consensus 369 ~W~~~~~g~~~~~~gy~ 385 (412)
+|++.|+ .+|..||+
T Consensus 421 ~WSl~Dn--fEW~~Gy~ 435 (469)
T PRK13511 421 IWSLMDV--FSWSNGYE 435 (469)
T ss_pred ecccccc--cchhcCcc
Confidence 9999999 67876644
No 14
>PLN02814 beta-glucosidase
Probab=99.72 E-value=5.9e-16 Score=156.72 Aligned_cols=284 Identities=14% Similarity=0.210 Sum_probs=177.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++|++.||++|+|+.|+ .++ |..+.|+ .|.+|+++++.++++|+.|.++||.++++|+. |+ .
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRf-SIs---WsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H-~d-------l 142 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRF-SIS---WSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYH-YD-------L 142 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEE-ecc---HhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecC-CC-------C
Confidence 4578999999999999999999 655 7788775 57789999999999999999999999999984 33 2
Q ss_pred hhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC-------CCh---
Q 015179 149 VEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD-------PSG--- 217 (412)
Q Consensus 149 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~-------~~~--- 217 (412)
|.|..+. |+ |.+++..+.|.+|.+.+++| |++. |-.|-..|||+.... .++
T Consensus 143 P~~L~~~yGG--------W~n~~~i~~F~~YA~~~f~~--------fgdr--Vk~WiT~NEP~~~~~~gy~~G~~pg~~~ 204 (504)
T PLN02814 143 PQSLEDEYGG--------WINRKIIEDFTAFADVCFRE--------FGED--VKLWTTINEATIFAIGSYGQGIRYGHCS 204 (504)
T ss_pred CHHHHHhcCC--------cCChhHHHHHHHHHHHHHHH--------hCCc--CCEEEeccccchhhhcccccCcCCCCCC
Confidence 3565442 32 56799999999999999999 9994 778999999985321 000
Q ss_pred --------------hHHHHH------HHHHHHHHHhc---CCCCeEEecccc--ccCCC-CCccc-----------c--C
Q 015179 218 --------------TLLQEW------IKEMAAHVKSI---DNHHLLEVGLEG--FYGES-VPERQ-----------K--Y 258 (412)
Q Consensus 218 --------------~~~~~~------~~~~~~~Ir~~---dp~~lV~~g~~g--~~~~~-~~~~~-----------~--~ 258 (412)
+.++.- ...++.++|+. .|+..|.+-... .+... .++.. . .
T Consensus 205 ~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~ 284 (504)
T PLN02814 205 PNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLSPYTNSKDDEIATQRAKAFLYGWML 284 (504)
T ss_pred cccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceeecCCCCHHHHHHHHHHHHHhhhhhh
Confidence 111211 23455667764 555444321111 11110 00000 0 0
Q ss_pred CC---CCCC--------CCC-cccc---ccCCCCcceEeeecCCCCCCCC-C-C-------CC---------------hH
Q 015179 259 NP---NNTP--------VGT-DFIT---NNQIPDVDFATIHIYPEQWLPP-G-N-------TS---------------DE 299 (412)
Q Consensus 259 ~p---~~~~--------~g~-d~~~---~~~~~~iDv~s~H~Y~~~~~~~-~-~-------~~---------------~~ 299 (412)
.| +.|. ... .+.. ......+|++++.+|....... + . .. .+
T Consensus 285 dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (504)
T PLN02814 285 KPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPAPSIFPSMNEGFFTDMGAYIISAGNSSF 364 (504)
T ss_pred HHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCCCCcccccCCCcccccccccCCCCCcCC
Confidence 00 0000 000 0000 0011245999999997532110 0 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCC-cEEEEecCCCCCCCC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCc
Q 015179 300 IQLAFVNRWIQAHIQDSDSILKK-PILIGEFGKSYKYPG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGM 377 (412)
Q Consensus 300 ~~~~~~~~~i~~~~~~~~~~~gk-Pv~igE~G~~~~~~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 377 (412)
-.+......+...+....+..+. ||+|+|.|+.....| ...+.|..|+++.+.++.++..++-.+.|++.|++.|+
T Consensus 365 ~gWei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDn-- 442 (504)
T PLN02814 365 FEFDATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDL-- 442 (504)
T ss_pred CCCeECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--
Confidence 00001122344433333322555 799999999755323 34678999999999998888888877899999999998
Q ss_pred cccCCCcE
Q 015179 378 TNFGDGYE 385 (412)
Q Consensus 378 ~~~~~gy~ 385 (412)
.+|..||+
T Consensus 443 fEW~~Gy~ 450 (504)
T PLN02814 443 YELLGGYT 450 (504)
T ss_pred hchhcccc
Confidence 66766643
No 15
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=99.72 E-value=6.8e-16 Score=155.59 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS--PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
...+++|++.|+++|+|+.|+ ..+ |..+.|. .+.+|++.++.++++|+.+.++||.++++|+. |+ .
T Consensus 68 Yhry~EDI~Lm~elG~~~yRf-SIs---WsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H-~d-------l 135 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRT-SIA---WTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH-FE-------M 135 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEe-ccc---ceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------C
Confidence 458999999999999999999 555 7778775 35589999999999999999999999999974 22 2
Q ss_pred hhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCC-------------C-
Q 015179 149 VEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCP-------------T- 213 (412)
Q Consensus 149 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~-------------~- 213 (412)
|.|..+. |. |.+++..+.|.+|++.+++| |++. |-.|-..|||+.. .
T Consensus 136 P~~L~~~yGG--------W~n~~~~~~F~~Ya~~~f~~--------fgdr--Vk~WiT~NEp~~~~~~~~~~~gy~~~g~ 197 (477)
T PRK15014 136 PLHLVQQYGS--------WTNRKVVDFFVRFAEVVFER--------YKHK--VKYWMTFNEINNQRNWRAPLFGYCCSGV 197 (477)
T ss_pred CHHHHHhcCC--------CCChHHHHHHHHHHHHHHHH--------hcCc--CCEEEEecCccccccccccccccccccc
Confidence 3555432 32 55799999999999999999 9995 7789999999732 0
Q ss_pred -CCCh-h----HHHHH------HHHHHHHHHhcCCCCeEEecccc--ccCCC-CCcc-----------c-cCCCC---CC
Q 015179 214 -DPSG-T----LLQEW------IKEMAAHVKSIDNHHLLEVGLEG--FYGES-VPER-----------Q-KYNPN---NT 263 (412)
Q Consensus 214 -~~~~-~----~~~~~------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~-~~~~-----------~-~~~p~---~~ 263 (412)
.+.+ . .++.. ..+++.++|+..|+..|.+-... ++... .++. . ...|- .|
T Consensus 198 ~~~~~~~~~~~~~~~~h~~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~~~~~f~d~~~~G~Y 277 (477)
T PRK15014 198 VYTEHENPEETMYQVLHHQFVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGYY 277 (477)
T ss_pred ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCceeccCCCCHHHHHHHHHHHHhcccccccccCCCC
Confidence 0111 0 11211 24556778887776555432111 11110 0000 0 00000 00
Q ss_pred C---------CCC--cccc----ccCCCCcceEeeecCCCCCCCC--------CC------C----ChHHHHHHHHHHHH
Q 015179 264 P---------VGT--DFIT----NNQIPDVDFATIHIYPEQWLPP--------GN------T----SDEIQLAFVNRWIQ 310 (412)
Q Consensus 264 ~---------~g~--d~~~----~~~~~~iDv~s~H~Y~~~~~~~--------~~------~----~~~~~~~~~~~~i~ 310 (412)
. .+. ++.. ......+|++++.+|....... ++ . ..+-.+......++
T Consensus 278 P~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~i~P~Gl~ 357 (477)
T PRK15014 278 PSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFEGSVPNPYVKASDWGWQIDPVGLR 357 (477)
T ss_pred CHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcceeCeeeccCCCCCCCccccccccCCCCcccCCCCCccCcHHHH
Confidence 0 000 0000 0112346999999996532110 00 0 00000111223344
Q ss_pred HHHHHhhhcCCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhhh-cCCCccccccccccccCccccCCC
Q 015179 311 AHIQDSDSILKKPILIGEFGKSYKY----PG-YSEQKRNSYFQKVYDAIYDCAK-SKGPCGGGLFWQLMTQGMTNFGDG 383 (412)
Q Consensus 311 ~~~~~~~~~~gkPv~igE~G~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~g~~~~~~g 383 (412)
..+....+..++||+|+|.|+.... .| .....|..|+++.+.++.++.. .+-.+.|++.|++.|+ .+|..|
T Consensus 358 ~~l~~~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~Dn--fEw~~G 434 (477)
T PRK15014 358 YALCELYERYQKPLFIVENGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDC--VSFTTG 434 (477)
T ss_pred HHHHHHHHhcCCCEEEeCCCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhh--hcccCC
Confidence 4444343337899999999998532 12 2357899999999999888874 7777899999999998 667667
No 16
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=99.72 E-value=1.2e-15 Score=153.87 Aligned_cols=301 Identities=17% Similarity=0.227 Sum_probs=187.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
....+++|++.|+++|+|+.|+ ..+ |..+.|. .|.+|++.++.++++|+.|.++||.++++|+. |+ .
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRf-SIs---WsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H-~d-------l 118 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRI-SIA---WSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHH-FD-------T 118 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEE-ecc---hhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccC-CC-------C
Confidence 3568999999999999999999 655 7788775 46789999999999999999999999999985 32 2
Q ss_pred hhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC--------CCh---
Q 015179 149 VEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD--------PSG--- 217 (412)
Q Consensus 149 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~--------~~~--- 217 (412)
|.|..+.|. |.+++..+.|.+|.+.+++| |+ + |-.|...|||+.... +.+
T Consensus 119 P~~L~~~GG--------W~n~~~v~~F~~YA~~~f~~--------fg-d--Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~ 179 (467)
T TIGR01233 119 PEALHSNGD--------FLNRENIEHFIDYAAFCFEE--------FP-E--VNYWTTFNEIGPIGDGQYLVGKFPPGIKY 179 (467)
T ss_pred cHHHHHcCC--------CCCHHHHHHHHHHHHHHHHH--------hC-C--CCEEEEecchhhhhhccchhcccCCCccc
Confidence 456644332 56799999999999999999 98 3 778999999985321 111
Q ss_pred ---hHHHHH------HHHHHHHHHhcCCCCeEEecccc--ccCC--CCCccc-------------cCCC---CCCC----
Q 015179 218 ---TLLQEW------IKEMAAHVKSIDNHHLLEVGLEG--FYGE--SVPERQ-------------KYNP---NNTP---- 264 (412)
Q Consensus 218 ---~~~~~~------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~--~~~~~~-------------~~~p---~~~~---- 264 (412)
..++.. ..+++.++|+..|+..|.+-... ++.. ..++.. ...| +.|.
T Consensus 180 ~~~~~~~a~hn~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~ 259 (467)
T TIGR01233 180 DLAKVFQSHHNMMVSHARAVKLYKDKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTM 259 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCceeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHH
Confidence 111222 24556788888887655432211 1111 000000 0000 0010
Q ss_pred --------CC---Ccccc----ccC--CCCcceEeeecCCCCCCCC---------------C-------C-------CC-
Q 015179 265 --------VG---TDFIT----NNQ--IPDVDFATIHIYPEQWLPP---------------G-------N-------TS- 297 (412)
Q Consensus 265 --------~g---~d~~~----~~~--~~~iDv~s~H~Y~~~~~~~---------------~-------~-------~~- 297 (412)
.. ..+.. ... ...+|++++.+|....... + . ..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (467)
T TIGR01233 260 EGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVGRRVAPDYV 339 (467)
T ss_pred HHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccccccCCccccCcccccCCCcccccCCCCC
Confidence 00 00000 000 1245999999996532110 0 0 00
Q ss_pred --hHHHHHHHHHHHHHHHHHhhhcCCC--cEEEEecCCCCCC---CC-CChHHHHHHHHHHHHHHHHhhhcCCCcccccc
Q 015179 298 --DEIQLAFVNRWIQAHIQDSDSILKK--PILIGEFGKSYKY---PG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLF 369 (412)
Q Consensus 298 --~~~~~~~~~~~i~~~~~~~~~~~gk--Pv~igE~G~~~~~---~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~ 369 (412)
.+-.+......++..+....+..++ ||+|+|.|..... .| ...+.|..|++..+.++.++..++-.+.|++.
T Consensus 340 ~~t~~gw~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~ 419 (467)
T TIGR01233 340 PRTDWDWIIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFI 419 (467)
T ss_pred CcCCCCCeeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 0000011123344444434333665 6999999998532 12 23578999999999998888877777899999
Q ss_pred ccccccCccccCCC----cEEEeCCCccHHHHHHHHHH
Q 015179 370 WQLMTQGMTNFGDG----YEVVLESSPSTANIINQQSL 403 (412)
Q Consensus 370 W~~~~~g~~~~~~g----y~i~~~~~~~~~~~i~~~~~ 403 (412)
|++.|+ .+|..| |+++.-|-.+..++.|+-+.
T Consensus 420 WSl~Dn--~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~ 455 (467)
T TIGR01233 420 WSLMDV--FSWSNGYEKRYGLFYVDFDTQERYPKKSAH 455 (467)
T ss_pred ccchhh--hchhccccCccceEEECCCCCccccccHHH
Confidence 999998 667666 55555433333444444443
No 17
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=99.72 E-value=7.9e-16 Score=154.87 Aligned_cols=287 Identities=17% Similarity=0.246 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS--PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
...+++|++.|+++|+|+.|+ ..+ |..+.|. .+.+|++.++.++++|+.|.++||.++++|+. |+ .
T Consensus 70 Yhry~eDi~l~~~lG~~~yR~-si~---WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H-~~-------~ 137 (474)
T PRK09852 70 YHRYKEDIALMAEMGFKVFRT-SIA---WSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCH-FD-------V 137 (474)
T ss_pred hhhhHHHHHHHHHcCCCeEEe-ece---eeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC-CC-------C
Confidence 568899999999999999999 555 7777765 34579999999999999999999999999974 22 2
Q ss_pred hhhHHhh-CCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC------C----CCh
Q 015179 149 VEWARER-GQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT------D----PSG 217 (412)
Q Consensus 149 ~~w~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~------~----~~~ 217 (412)
|.|..+. | =|.+++..+.|.+|++.+++| |++. |-.|-..|||+... . +.+
T Consensus 138 P~~l~~~~G--------GW~~~~~~~~F~~ya~~~~~~--------fgd~--Vk~WiTfNEPn~~~~~gy~~~g~~~~p~ 199 (474)
T PRK09852 138 PMHLVTEYG--------SWRNRKMVEFFSRYARTCFEA--------FDGL--VKYWLTFNEINIMLHSPFSGAGLVFEEG 199 (474)
T ss_pred CHHHHHhcC--------CCCCHHHHHHHHHHHHHHHHH--------hcCc--CCeEEeecchhhhhccCccccCcccCCC
Confidence 3454332 2 155799999999999999999 9995 67899999998431 0 111
Q ss_pred --h---HHHHH------HHHHHHHHHhcCCCCeEEecccc--ccCCC-CCccc----------cC--CC---CCCC----
Q 015179 218 --T---LLQEW------IKEMAAHVKSIDNHHLLEVGLEG--FYGES-VPERQ----------KY--NP---NNTP---- 264 (412)
Q Consensus 218 --~---~~~~~------~~~~~~~Ir~~dp~~lV~~g~~g--~~~~~-~~~~~----------~~--~p---~~~~---- 264 (412)
. .++.. ..+++.++|+..|+..|.+-... ++... .++.. .+ .| +.|.
T Consensus 200 ~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~~~~~~~~d~~~~G~YP~~~~ 279 (474)
T PRK09852 200 ENQDQVKYQAAHHELVASALATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPAYSA 279 (474)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeeeeCCCCHHHHHHHHHHHHHhhhhcchhhCCCccHHHH
Confidence 0 11222 23455677877776544332111 11110 00000 00 00 0000
Q ss_pred -----CCC--cccc---ccCCCCcceEeeecCCCCCCCC----CC--C-------------ChHHHHHHHHHHHHHHHHH
Q 015179 265 -----VGT--DFIT---NNQIPDVDFATIHIYPEQWLPP----GN--T-------------SDEIQLAFVNRWIQAHIQD 315 (412)
Q Consensus 265 -----~g~--d~~~---~~~~~~iDv~s~H~Y~~~~~~~----~~--~-------------~~~~~~~~~~~~i~~~~~~ 315 (412)
.+. ++.. ......+|++++.+|....... .. . ..+-.+......+...+..
T Consensus 280 ~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~gw~i~P~Gl~~~l~~ 359 (474)
T PRK09852 280 RVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSLRNPYLQVSDWGWGIDPLGLRITMNM 359 (474)
T ss_pred HHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeecccCCCCCCCCcCCceecccCCCcccCCCCCeeChHHHHHHHHH
Confidence 000 0000 0011245999999997532110 00 0 0000011122334444444
Q ss_pred hhhcCCCcEEEEecCCCCCC----CC-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCC-----cE
Q 015179 316 SDSILKKPILIGEFGKSYKY----PG-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDG-----YE 385 (412)
Q Consensus 316 ~~~~~gkPv~igE~G~~~~~----~g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~g-----y~ 385 (412)
..+..++||+|+|.|+.... .| .....|..|+++.+.++.++..++-.+.|++.|++.|+ .+|..| |+
T Consensus 360 ~~~~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~G~y~~RfG 437 (474)
T PRK09852 360 MYDRYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDL--VSASTGEMSKRYG 437 (474)
T ss_pred HHHhcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeeccccc--ccccCCCccceee
Confidence 43337899999999998542 12 24678999999999998888888777899999999998 667667 66
Q ss_pred EEeC
Q 015179 386 VVLE 389 (412)
Q Consensus 386 i~~~ 389 (412)
++.-
T Consensus 438 Lv~V 441 (474)
T PRK09852 438 FVYV 441 (474)
T ss_pred eEEE
Confidence 6654
No 18
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.71 E-value=2.9e-16 Score=145.93 Aligned_cols=277 Identities=18% Similarity=0.286 Sum_probs=133.1
Q ss_pred CCCCCCCEEecCCcEE--ECCEEEEEeeeeccccccc----CCCcC-cHHHHHHHHHHHHHcCCCEEEeccccCCCCccc
Q 015179 30 ANPNQEFAQTNGSHFA--VNGKPLYLNGFNAYWMLYY----AGDPS-TKAKVTAAFQQATKYGMNIARTWAFSDGGYRAL 102 (412)
Q Consensus 30 ~~~~~~~v~v~g~~l~--~dG~~~~~~GvN~~~~~~~----~~~~~-~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~ 102 (412)
.++....|+++|++|. .+|++|+++||.+.+.... ..+|. +.+...+|+..|+++|+|+||++...
T Consensus 4 ~~~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vd------- 76 (314)
T PF03198_consen 4 AAAAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVD------- 76 (314)
T ss_dssp SSTTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES----------
T ss_pred hhccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeC-------
Confidence 3445567999999999 5999999999998665331 11342 56789999999999999999997553
Q ss_pred ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHH
Q 015179 103 QVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAV 182 (412)
Q Consensus 103 ~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (412)
+. ..-|..+.++.+.||||+++|... ....+ . ..+...|+ ..+.+....+
T Consensus 77 -p~---------~nHd~CM~~~~~aGIYvi~Dl~~p---~~sI~--------r----~~P~~sw~-----~~l~~~~~~v 126 (314)
T PF03198_consen 77 -PS---------KNHDECMSAFADAGIYVILDLNTP---NGSIN--------R----SDPAPSWN-----TDLLDRYFAV 126 (314)
T ss_dssp -TT---------S--HHHHHHHHHTT-EEEEES-BT---TBS----------T----TS-----------HHHHHHHHHH
T ss_pred -CC---------CCHHHHHHHHHhCCCEEEEecCCC---Ccccc--------C----CCCcCCCC-----HHHHHHHHHH
Confidence 11 134788899999999999999742 11111 0 00011222 2234445556
Q ss_pred HhcccccccccccCCCceEEeeeccCCCCCCCC--ChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCC
Q 015179 183 LTRINSITGVAYKDDPTIFAWELMNEARCPTDP--SGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNP 260 (412)
Q Consensus 183 v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~--~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p 260 (412)
++. |++.|+++++-++||-...... .+.-+++.++.|-+.|++...+. |-+|-. .....+.+ .
T Consensus 127 id~--------fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R~-IPVGYs---aaD~~~~r---~ 191 (314)
T PF03198_consen 127 IDA--------FAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYRS-IPVGYS---AADDAEIR---Q 191 (314)
T ss_dssp HHH--------HTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEE---E---TTTH---H
T ss_pred HHH--------hccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCCC-CceeEE---ccCChhHH---H
Confidence 665 9999999999999998764321 22346777888888998876643 333321 11111000 0
Q ss_pred CCCCCCCcccc-ccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCC
Q 015179 261 NNTPVGTDFIT-NNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYS 339 (412)
Q Consensus 261 ~~~~~g~d~~~-~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~ 339 (412)
. -.++.. ......+|++.++.|. |-. .++++. ..-.+.....+. ..+|++.+|||+....+
T Consensus 192 ~----~a~Yl~Cg~~~~~iDf~g~N~Y~--WCg--~Stf~~------SGy~~l~~~f~~-y~vPvffSEyGCn~~~p--- 253 (314)
T PF03198_consen 192 D----LANYLNCGDDDERIDFFGLNSYE--WCG--DSTFET------SGYDRLTKEFSN-YSVPVFFSEYGCNTVTP--- 253 (314)
T ss_dssp H----HHHHTTBTT-----S-EEEEE------S--S--HHH------HSHHHHHHHHTT--SS-EEEEEE---SSSS---
T ss_pred H----HHHHhcCCCcccccceeeeccce--ecC--CCcccc------ccHHHHHHHhhC-CCCCeEEcccCCCCCCC---
Confidence 0 000000 0012468999999997 765 333321 112233334444 79999999999987653
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCCcEEEe
Q 015179 340 EQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYEVVL 388 (412)
Q Consensus 340 ~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~gy~i~~ 388 (412)
+-+.++- +++...+. +-..|.+...|..+ ..+|+++.
T Consensus 254 -----R~f~ev~-aly~~~Mt-~v~SGGivYEy~~e-----~n~yGlV~ 290 (314)
T PF03198_consen 254 -----RTFTEVP-ALYSPEMT-DVWSGGIVYEYFQE-----ANNYGLVE 290 (314)
T ss_dssp --------THHH-HHTSHHHH-TTEEEEEES-SB-------SSS--SEE
T ss_pred -----ccchHhH-HhhCccch-hheeceEEEEEecc-----CCceEEEE
Confidence 2233321 23332222 23578888888765 24678766
No 19
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=3e-15 Score=146.40 Aligned_cols=284 Identities=18% Similarity=0.262 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCC--CCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPG--SYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRY 148 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~ 148 (412)
...+++|++.||++|+|+.|+ ... |..+-|+.+ ..|+++++.+|++++.|.++||..+++|+. |+.
T Consensus 58 YhrYkeDi~L~~emG~~~~R~-SI~---WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~H-fd~------- 125 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRT-SIE---WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYH-FDL------- 125 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEe-eee---EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecc-cCC-------
Confidence 568999999999999999999 544 666666543 589999999999999999999999999985 221
Q ss_pred hhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC---------CCh--
Q 015179 149 VEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD---------PSG-- 217 (412)
Q Consensus 149 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~---------~~~-- 217 (412)
|.|..+.. .=|.+.+.++.|.+|.+.+++| |++ .|-.|-++|||+.... |..
T Consensus 126 P~~L~~~y-------gGW~nR~~i~~F~~ya~~vf~~--------f~d--kVk~W~TFNE~n~~~~~~y~~~~~~p~~~~ 188 (460)
T COG2723 126 PLWLQKPY-------GGWENRETVDAFARYAATVFER--------FGD--KVKYWFTFNEPNVVVELGYLYGGHPPGIVD 188 (460)
T ss_pred cHHHhhcc-------CCccCHHHHHHHHHHHHHHHHH--------hcC--cceEEEEecchhhhhcccccccccCCCccC
Confidence 34443331 1256799999999999999999 998 5888999999996431 111
Q ss_pred --hHHHHHH------HHHHHHHHhcCCC-Ce-EEeccccccCCCC-Cc--------------------cccCCCCC---C
Q 015179 218 --TLLQEWI------KEMAAHVKSIDNH-HL-LEVGLEGFYGESV-PE--------------------RQKYNPNN---T 263 (412)
Q Consensus 218 --~~~~~~~------~~~~~~Ir~~dp~-~l-V~~g~~g~~~~~~-~~--------------------~~~~~p~~---~ 263 (412)
..++... ..+++++|++.|+ .+ ++......+..+. ++ .++..|.. +
T Consensus 189 ~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~~~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~ 268 (460)
T COG2723 189 PKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILNLTPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKE 268 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEeccCcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHH
Confidence 1122222 3445777888886 22 2222222222110 00 00111100 0
Q ss_pred --CCCC--ccc----cccCCCCcceEeeecCCCC------------CCCC--------CC-CChHHHHHHHHHHHHHHHH
Q 015179 264 --PVGT--DFI----TNNQIPDVDFATIHIYPEQ------------WLPP--------GN-TSDEIQLAFVNRWIQAHIQ 314 (412)
Q Consensus 264 --~~g~--d~~----~~~~~~~iDv~s~H~Y~~~------------~~~~--------~~-~~~~~~~~~~~~~i~~~~~ 314 (412)
..+. +.. +.+....+|++++.+|.+. +... +. ...+-.+...+..|...+.
T Consensus 269 ~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~~~~~~~~~~~~~~~p~~~~sdwGWeI~P~GL~~~l~ 348 (460)
T COG2723 269 LEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYVSGYGPGGFFTSVPNPGLEVSDWGWEIYPKGLYDILE 348 (460)
T ss_pred HHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcCCcccccccccccCCCCCcccCCCceeChHHHHHHHH
Confidence 0000 000 0011123799999999831 0100 00 0001111112233444444
Q ss_pred HhhhcCCCcEEEEecCCCCCCC----CCChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCCcE
Q 015179 315 DSDSILKKPILIGEFGKSYKYP----GYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYE 385 (412)
Q Consensus 315 ~~~~~~gkPv~igE~G~~~~~~----g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~gy~ 385 (412)
......++|++|+|.|+..... +...+.|..|+++.+.++.++..++..+.|++.|++.|. -+|..||.
T Consensus 349 ~~~~rY~~p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~--~sw~~gy~ 421 (460)
T COG2723 349 KLYERYGIPLFITENGLGVKDEVDFDGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDN--YSWANGYK 421 (460)
T ss_pred HHHHHhCCCeEEecCCCCcccccccCCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccc--cchhhccc
Confidence 4432378999999999775531 234688999999999888888888888899999999998 66766643
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.70 E-value=2.5e-16 Score=150.24 Aligned_cols=242 Identities=17% Similarity=0.211 Sum_probs=143.6
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCC-CCCChhHHHHHHHHHHHHHHcCCEEEEecc--cCCccCCCchhhhh
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSP-GSYNEDTFKALDFVVAEAREYGVYVILSLV--NNFKEYGGRPRYVE 150 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~-g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~--~~w~~~gg~~~~~~ 150 (412)
.++.|+.||+.|+|.||+-++.+ |.. |..+ +++.-++...|+++||+++|++| +.|.++|.|....+
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~-------P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~a 95 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVN-------PYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAA 95 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS--------TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TT
T ss_pred CCCHHHHHHhcCCCeEEEEeccC-------CcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCcc
Confidence 35679999999999999954432 222 4334 77788889999999999999999 56877777755455
Q ss_pred hHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCC-CceEEeeeccCCCCCCC------CChhHHHHH
Q 015179 151 WARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDD-PTIFAWELMNEARCPTD------PSGTLLQEW 223 (412)
Q Consensus 151 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~-p~v~~wel~NEp~~~~~------~~~~~~~~~ 223 (412)
|.. .+-.+..++..+|.+.+++. +++. -.+-+++|+||-+.... ...+.+..+
T Consensus 96 W~~------------~~~~~l~~~v~~yT~~vl~~--------l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~l 155 (332)
T PF07745_consen 96 WAN------------LSFDQLAKAVYDYTKDVLQA--------LKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKL 155 (332)
T ss_dssp CTS------------SSHHHHHHHHHHHHHHHHHH--------HHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHH
T ss_pred CCC------------CCHHHHHHHHHHHHHHHHHH--------HHHCCCCccEEEeCccccccccCcCCCccCHHHHHHH
Confidence 531 12267778888888888887 7654 23445799999875432 123568888
Q ss_pred HHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHH
Q 015179 224 IKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLA 303 (412)
Q Consensus 224 ~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~ 303 (412)
+++.+++||+.+|+..|++....- .+.+. +.+..+.+... .-..|++++++||. |.. +. .
T Consensus 156 l~ag~~AVr~~~p~~kV~lH~~~~---~~~~~-------~~~~f~~l~~~-g~d~DviGlSyYP~-w~~----~l----~ 215 (332)
T PF07745_consen 156 LNAGIKAVREVDPNIKVMLHLANG---GDNDL-------YRWFFDNLKAA-GVDFDVIGLSYYPF-WHG----TL----E 215 (332)
T ss_dssp HHHHHHHHHTHSSTSEEEEEES-T---TSHHH-------HHHHHHHHHHT-TGG-SEEEEEE-ST-TST-----H----H
T ss_pred HHHHHHHHHhcCCCCcEEEEECCC---CchHH-------HHHHHHHHHhc-CCCcceEEEecCCC-Ccc----hH----H
Confidence 999999999999999998864321 00000 00000111111 13359999999996 432 22 2
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEEecCCCCCC----------------CC--CChHHHHHHHHHHHHHHHHhhhcCCCcc
Q 015179 304 FVNRWIQAHIQDSDSILKKPILIGEFGKSYKY----------------PG--YSEQKRNSYFQKVYDAIYDCAKSKGPCG 365 (412)
Q Consensus 304 ~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~----------------~g--~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 365 (412)
.+..-+.. .+++ .+|||+|.|+|.+... .+ .+++.|.++++++.+.+.+. . ++.+.
T Consensus 216 ~l~~~l~~---l~~r-y~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~-p-~~~g~ 289 (332)
T PF07745_consen 216 DLKNNLND---LASR-YGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV-P-NGGGL 289 (332)
T ss_dssp HHHHHHHH---HHHH-HT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS----TTEE
T ss_pred HHHHHHHH---HHHH-hCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh-c-cCCeE
Confidence 22222222 2333 6999999999988771 11 15778899999988776432 2 23589
Q ss_pred cccccc
Q 015179 366 GGLFWQ 371 (412)
Q Consensus 366 G~~~W~ 371 (412)
|.+||.
T Consensus 290 GvfYWe 295 (332)
T PF07745_consen 290 GVFYWE 295 (332)
T ss_dssp EEEEE-
T ss_pred EEEeec
Confidence 999993
No 21
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=99.70 E-value=2.1e-17 Score=167.05 Aligned_cols=284 Identities=17% Similarity=0.269 Sum_probs=171.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS--PGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
....+++||+.|+++|+|+.|+ .++ |..++|. .|.+|++.++.++++|+.+.++||.++++|+. |+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRf-si~---W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H-~~------- 123 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRF-SIS---WSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYH-FD------- 123 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEE-E-----HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEES-S--------
T ss_pred chhhhhHHHHHHHhhccceeee-ecc---hhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeee-cc-------
Confidence 3578999999999999999999 655 7788887 58999999999999999999999999999985 22
Q ss_pred hhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC--------CCCh--
Q 015179 148 YVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT--------DPSG-- 217 (412)
Q Consensus 148 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~--------~~~~-- 217 (412)
.|.|..+.| =|.+++..+.|.+|.+.+++| |++. |-.|...|||+... .+.+
T Consensus 124 ~P~~l~~~g--------gw~~~~~~~~F~~Ya~~~~~~--------~gd~--V~~w~T~NEp~~~~~~~y~~g~~~p~~~ 185 (455)
T PF00232_consen 124 LPLWLEDYG--------GWLNRETVDWFARYAEFVFER--------FGDR--VKYWITFNEPNVFALLGYLYGGFPPGRD 185 (455)
T ss_dssp -BHHHHHHT--------GGGSTHHHHHHHHHHHHHHHH--------HTTT--BSEEEEEETHHHHHHHHHTSSSSTTCSS
T ss_pred cccceeecc--------cccCHHHHHHHHHHHHHHHHH--------hCCC--cceEEeccccceeecccccccccccccc
Confidence 246665433 255799999999999999999 9984 77899999998421 1111
Q ss_pred ---hHH------HHHHHHHHHHHHhcCCCCeEEecccc-ccCCCCCc---c--------------------ccCCCCC--
Q 015179 218 ---TLL------QEWIKEMAAHVKSIDNHHLLEVGLEG-FYGESVPE---R--------------------QKYNPNN-- 262 (412)
Q Consensus 218 ---~~~------~~~~~~~~~~Ir~~dp~~lV~~g~~g-~~~~~~~~---~--------------------~~~~p~~-- 262 (412)
..+ ..-..++++.+|+..|+..|.+-... +..+..+. . .+-.|..
T Consensus 186 ~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~ 265 (455)
T PF00232_consen 186 SLKAFYQAAHNLLLAHAKAVKAIKEKYPDGKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMK 265 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTCTSEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHH
T ss_pred ccchhhHHHhhHHHHHHHHHHHHhhcccceEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHh
Confidence 111 11235667888888888777542211 11010000 0 0000000
Q ss_pred -C--CC--CCcccc---ccCCCCcceEeeecCCCCCCC--------CC---------CC-----ChHHHHHHHHHHHHHH
Q 015179 263 -T--PV--GTDFIT---NNQIPDVDFATIHIYPEQWLP--------PG---------NT-----SDEIQLAFVNRWIQAH 312 (412)
Q Consensus 263 -~--~~--g~d~~~---~~~~~~iDv~s~H~Y~~~~~~--------~~---------~~-----~~~~~~~~~~~~i~~~ 312 (412)
+ .. -..+.. ......+|++++++|...... .. .. ..+..+......++..
T Consensus 266 ~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P~Gl~~~ 345 (455)
T PF00232_consen 266 EYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYPEGLRDV 345 (455)
T ss_dssp HHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBETHHHHHH
T ss_pred hccccccccccccchhhhcccccchhhhhccccceeeccCccccccccccCCccccccccccccccccCcccccchHhhh
Confidence 0 00 000000 001234799999999752110 00 00 0000000001123333
Q ss_pred HHHh-hhcCCCcEEEEecCCCCCCC---C-CChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCCCcE
Q 015179 313 IQDS-DSILKKPILIGEFGKSYKYP---G-YSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGDGYE 385 (412)
Q Consensus 313 ~~~~-~~~~gkPv~igE~G~~~~~~---g-~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~gy~ 385 (412)
+... ++..++||+|+|.|+..... + .....|..|+++.+.++.++..++-.+.|+++|++.|+ .+|..||+
T Consensus 346 L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn--~Ew~~Gy~ 421 (455)
T PF00232_consen 346 LRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDN--FEWAEGYK 421 (455)
T ss_dssp HHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB-----BGGGGGG
T ss_pred hhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccc--cccccCcc
Confidence 3333 22134999999999987742 1 23578999999999999888888878899999999999 67866643
No 22
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=1.9e-13 Score=124.22 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCccc-ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc--cCCccCCCchhhh
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRAL-QVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV--NNFKEYGGRPRYV 149 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~-~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~--~~w~~~gg~~~~~ 149 (412)
..++.|+.||++|+|.||+-++.+. +..= ++--|-.+ .+...-++-+.|+..||+|++++| ++|.+++.+....
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP-~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPk 140 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDP-YDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPK 140 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCC-ccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcH
Confidence 5567899999999999999544421 1100 00011122 355666777788999999999999 5787777766555
Q ss_pred hhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCC-ceEEeeeccCCCCCCC-CC-----hhHHHH
Q 015179 150 EWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDP-TIFAWELMNEARCPTD-PS-----GTLLQE 222 (412)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p-~v~~wel~NEp~~~~~-~~-----~~~~~~ 222 (412)
+|..- .-++.+++...+.+.++++ ++++- .+-+.+++||-+...- |. -+.+.+
T Consensus 141 aW~~l------------~fe~lk~avy~yTk~~l~~--------m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~ 200 (403)
T COG3867 141 AWENL------------NFEQLKKAVYSYTKYVLTT--------MKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAA 200 (403)
T ss_pred Hhhhc------------CHHHHHHHHHHHHHHHHHH--------HHHcCCCccceEeccccCCceeccCCCCcChHHHHH
Confidence 66321 1156777778888888887 77653 2234599999986532 22 245777
Q ss_pred HHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHH
Q 015179 223 WIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQL 302 (412)
Q Consensus 223 ~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~ 302 (412)
++++.+.++|+.+|+..|.+.... ... ++.|.+-.|-+.....+ .||+...+||. |.. + +
T Consensus 201 L~n~g~~avrev~p~ikv~lHla~---g~~-------n~~y~~~fd~ltk~nvd-fDVig~SyYpy-Whg----t----l 260 (403)
T COG3867 201 LLNAGIRAVREVSPTIKVALHLAE---GEN-------NSLYRWIFDELTKRNVD-FDVIGSSYYPY-WHG----T----L 260 (403)
T ss_pred HHHHHhhhhhhcCCCceEEEEecC---CCC-------CchhhHHHHHHHHcCCC-ceEEeeecccc-ccC----c----H
Confidence 889999999999999888875321 111 11121111111111223 59999999997 543 1 1
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEEecCCCCC---C-------------CCC--ChHHHHHHHHHHHHHHHHhhhcCCCc
Q 015179 303 AFVNRWIQAHIQDSDSILKKPILIGEFGKSYK---Y-------------PGY--SEQKRNSYFQKVYDAIYDCAKSKGPC 364 (412)
Q Consensus 303 ~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~---~-------------~g~--~~~~r~~~~~~~~~~~~~~~~~~~~~ 364 (412)
+.+..-+. +.+.+ .+|-|+|-|.+.... . .|+ +...|+++++++++.+.+... +++
T Consensus 261 ~nL~~nl~---dia~r-Y~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~--~~G 334 (403)
T COG3867 261 NNLTTNLN---DIASR-YHKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNVPK--SNG 334 (403)
T ss_pred HHHHhHHH---HHHHH-hcCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhCCC--CCc
Confidence 22221122 23344 799999999988332 1 123 356789999999887755443 346
Q ss_pred ccccccc
Q 015179 365 GGGLFWQ 371 (412)
Q Consensus 365 ~G~~~W~ 371 (412)
.|.|||.
T Consensus 335 lGvFYWE 341 (403)
T COG3867 335 LGVFYWE 341 (403)
T ss_pred eEEEEec
Confidence 9999996
No 23
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=2.7e-14 Score=150.61 Aligned_cols=152 Identities=18% Similarity=0.260 Sum_probs=117.4
Q ss_pred CCC--EEecCCcEEECCEEEEEeeeecccccc-cCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCC
Q 015179 34 QEF--AQTNGSHFAVNGKPLYLNGFNAYWMLY-YAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYN 110 (412)
Q Consensus 34 ~~~--v~v~g~~l~~dG~~~~~~GvN~~~~~~-~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~ 110 (412)
-|| |++..+.|.+||||++++|+|.+.... .+. ....+.++++|+.||++|+|+||++.+. + +
T Consensus 281 iGfR~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~-~~~~~~~~~dl~lmk~~n~N~vRtsHyP-------~------~ 346 (808)
T COG3250 281 IGFRTVEIKDGLLLINGKPVFIRGVNRHEDDPILGR-VTDEDAMERDLKLMKEANMNSVRTSHYP-------N------S 346 (808)
T ss_pred eccEEEEEECCeEEECCeEEEEeeeecccCCCcccc-ccCHHHHHHHHHHHHHcCCCEEEecCCC-------C------C
Confidence 466 777888899999999999999976522 221 1234569999999999999999996432 1 2
Q ss_pred hhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccc
Q 015179 111 EDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSIT 190 (412)
Q Consensus 111 ~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~ 190 (412)
++++++|+++||+||-+....|. + +..+++..+.....++.+++|
T Consensus 347 -------~~~ydLcDelGllV~~Ea~~~~~---------------~--------~~~~~~~~k~~~~~i~~mver----- 391 (808)
T COG3250 347 -------EEFYDLCDELGLLVIDEAMIETH---------------G--------MPDDPEWRKEVSEEVRRMVER----- 391 (808)
T ss_pred -------HHHHHHHHHhCcEEEEecchhhc---------------C--------CCCCcchhHHHHHHHHHHHHh-----
Confidence 27899999999999999864221 1 113567777788899999999
Q ss_pred cccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEecccc
Q 015179 191 GVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEG 246 (412)
Q Consensus 191 g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g 246 (412)
-|+||+|++|++.||...... ...+...+++.||++++..+...
T Consensus 392 ---~knHPSIiiWs~gNE~~~g~~---------~~~~~~~~k~~d~~r~~~~~~~~ 435 (808)
T COG3250 392 ---DRNHPSIIIWSLGNESGHGSN---------HWALYRWFKASDPTRPVQYEGRG 435 (808)
T ss_pred ---ccCCCcEEEEeccccccCccc---------cHHHHHHHhhcCCccceeccCcc
Confidence 999999999999999875321 35677788999999999887543
No 24
>PLN03059 beta-galactosidase; Provisional
Probab=99.53 E-value=4.8e-13 Score=139.57 Aligned_cols=181 Identities=18% Similarity=0.250 Sum_probs=132.1
Q ss_pred CEEecCCcEEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH
Q 015179 36 FAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK 115 (412)
Q Consensus 36 ~v~v~g~~l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 115 (412)
-|+++++.|++||+|+++..-..++.-. .++.|++.|++||++|+|+|-++++++ ..|+.+|+||.+...
T Consensus 29 ~v~~d~~~f~idG~p~~i~sG~iHY~R~------~p~~W~d~L~k~Ka~GlNtV~tYV~Wn----~HEp~~G~~dF~G~~ 98 (840)
T PLN03059 29 SVSYDHRAFIINGQRRILISGSIHYPRS------TPEMWPDLIQKAKDGGLDVIQTYVFWN----GHEPSPGNYYFEDRY 98 (840)
T ss_pred EEEEeCCEEEECCEEEEEEEeCcccCcC------CHHHHHHHHHHHHHcCCCeEEEEeccc----ccCCCCCeeeccchH
Confidence 4899999999999999988766554322 247999999999999999999999864 458899999999999
Q ss_pred HHHHHHHHHHHcCCEEEEecc----cCCccCCCchhhhhhHHh-hCCCCCCcCccCC-CHHHHHHHHHHHHHHHhcc--c
Q 015179 116 ALDFVVAEAREYGVYVILSLV----NNFKEYGGRPRYVEWARE-RGQSLKNEDDFYT-NAVVKQYYKNHVKAVLTRI--N 187 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~----~~w~~~gg~~~~~~w~~~-~g~~~~~~~~~~~-~~~~~~~~~~~~~~~v~r~--n 187 (412)
+|.++|++|++.||+||+..- ..| .+||. |.|... ++. .+.+ |+...++.++|+.+++.++ .
T Consensus 99 DL~~Fl~la~e~GLyvilRpGPYIcAEw-~~GGl---P~WL~~~~~i------~~Rs~d~~fl~~v~~~~~~l~~~l~~~ 168 (840)
T PLN03059 99 DLVKFIKVVQAAGLYVHLRIGPYICAEW-NFGGF---PVWLKYVPGI------EFRTDNGPFKAAMQKFTEKIVDMMKSE 168 (840)
T ss_pred HHHHHHHHHHHcCCEEEecCCcceeeee-cCCCC---chhhhcCCCc------ccccCCHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999974 456 36775 477642 222 2334 6888888999999988873 1
Q ss_pred ccccccccCCCceEEeeeccCCCCCCC---CChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 188 SITGVAYKDDPTIFAWELMNEARCPTD---PSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 188 ~~~g~~y~~~p~v~~wel~NEp~~~~~---~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
++ .+++--.|++.+|-||-..... .....+.+|+++ ..++.+-+.+.++
T Consensus 169 ~l---~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~---~~~~~Gi~VPl~t 220 (840)
T PLN03059 169 KL---FEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAAD---MAVKLGTGVPWVM 220 (840)
T ss_pred ce---eecCCCcEEEEEecccccceecccCcchHHHHHHHHH---HHHHcCCCcceEE
Confidence 21 1233345889999999875421 122345555444 4555565555554
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=99.51 E-value=8.4e-13 Score=127.00 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=111.3
Q ss_pred cEEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHH
Q 015179 43 HFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVA 122 (412)
Q Consensus 43 ~l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~ 122 (412)
+|++||||+++.+--.++.... ++.|++.|++||++|+|+|-+++++ ..+|+.+|+||.+....|+++|+
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p------~~~W~~~l~k~ka~G~n~v~~yv~W----~~he~~~g~~df~g~~dl~~f~~ 70 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIP------PEYWRDRLQKMKAAGLNTVSTYVPW----NLHEPEEGQFDFTGNRDLDRFLD 70 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-------GGGHHHHHHHHHHTT-SEEEEE--H----HHHSSBTTB---SGGG-HHHHHH
T ss_pred CeEECCEEEEEEEeeeccccCC------hhHHHHHHHHHHhCCcceEEEeccc----cccCCCCCcccccchhhHHHHHH
Confidence 4789999999988776554332 3589999999999999999998775 45688899999888889999999
Q ss_pred HHHHcCCEEEEecc----cCCccCCCchhhhhhHHhhCCCCCCcCccCC-CHHHHHHHHHHHHHHHhcccccccccccCC
Q 015179 123 EAREYGVYVILSLV----NNFKEYGGRPRYVEWARERGQSLKNEDDFYT-NAVVKQYYKNHVKAVLTRINSITGVAYKDD 197 (412)
Q Consensus 123 ~a~~~Gi~vil~l~----~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~ 197 (412)
.|+++||+||+.+- ..|. +||. |.|..... .....+ |+...+...++++.+++.+-+ ..+++.
T Consensus 71 ~a~~~gl~vilrpGpyi~aE~~-~gG~---P~Wl~~~~-----~~~~R~~~~~~~~~~~~~~~~~~~~~~~---~~~~~G 138 (319)
T PF01301_consen 71 LAQENGLYVILRPGPYICAEWD-NGGL---PAWLLRKP-----DIRLRTNDPPFLEAVERWYRALAKIIKP---LQYTNG 138 (319)
T ss_dssp HHHHTT-EEEEEEES---TTBG-GGG-----GGGGGST-----TS-SSSS-HHHHHHHHHHHHHHHHHHGG---GBGGGT
T ss_pred HHHHcCcEEEecccceeccccc-chhh---hhhhhccc-----cccccccchhHHHHHHHHHHHHHHHHHh---hhhcCC
Confidence 99999999999973 3342 4554 57875421 111223 577888888888887776443 123333
Q ss_pred CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCe
Q 015179 198 PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHL 239 (412)
Q Consensus 198 p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~l 239 (412)
-.|++.+|-||..... . -.++.+.+.+..++..++.+
T Consensus 139 GpII~vQvENEyg~~~--~---~~~Y~~~l~~~~~~~g~~~~ 175 (319)
T PF01301_consen 139 GPIIMVQVENEYGSYG--T---DRAYMEALKDAYRDWGIDPV 175 (319)
T ss_dssp SSEEEEEESSSGGCTS--S----HHHHHHHHHHHHHTT-SSS
T ss_pred CceehhhhhhhhCCCc--c---cHhHHHHHHHHHHHhhCccc
Confidence 4699999999998322 1 24566677777777666533
No 26
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=99.50 E-value=7.9e-13 Score=125.59 Aligned_cols=168 Identities=20% Similarity=0.297 Sum_probs=100.5
Q ss_pred CCcEE-ECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCC--C-----C--cccc-cCC---
Q 015179 41 GSHFA-VNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDG--G-----Y--RALQ-VSP--- 106 (412)
Q Consensus 41 g~~l~-~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~--~-----~--~~~~-~~~--- 106 (412)
+..|+ .||+||++.|-..+.+.... +.++++..|+..++.|||+||+.++..- . + .++. ..+
T Consensus 2 ~r~f~~~dG~Pff~lgdT~W~~~~~~----~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~ 77 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLGDTAWSLFHRL----TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQF 77 (289)
T ss_dssp SSSEEETTS-B--EEEEE-TTHHHH------HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT----
T ss_pred CceEecCCCCEEeehhHHHHHHhhCC----CHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCcccc
Confidence 45677 69999999998776554332 3568899999999999999999665421 0 1 1111 111
Q ss_pred --CCCChhHHHHHHHHHHHHHHcCCEEEEecccCCc-cCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHH
Q 015179 107 --GSYNEDTFKALDFVVAEAREYGVYVILSLVNNFK-EYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVL 183 (412)
Q Consensus 107 --g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~-~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v 183 (412)
..+|+++|+++|++|+.|.++||.+.|.+. |. .+.. ..|.... +.-..+..++|++.|+
T Consensus 78 d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~--wg~~~~~----~~Wg~~~------------~~m~~e~~~~Y~~yv~ 139 (289)
T PF13204_consen 78 DFTRPNPAYFDHLDRRIEKANELGIEAALVPF--WGCPYVP----GTWGFGP------------NIMPPENAERYGRYVV 139 (289)
T ss_dssp --TT----HHHHHHHHHHHHHHTT-EEEEESS---HHHHH-----------T------------TSS-HHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEE--ECCcccc----ccccccc------------cCCCHHHHHHHHHHHH
Confidence 236899999999999999999999987664 20 0100 1343100 1112345678999999
Q ss_pred hcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEecc
Q 015179 184 TRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGL 244 (412)
Q Consensus 184 ~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~ 244 (412)
+| |++.|+|+ |.|.||- .. .....+..++++..||+.||.+|+++..
T Consensus 140 ~R--------y~~~~Nvi-W~l~gd~-~~----~~~~~~~w~~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 140 AR--------YGAYPNVI-WILGGDY-FD----TEKTRADWDAMARGIKENDPYQLITIHP 186 (289)
T ss_dssp HH--------HTT-SSEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS-EEEEE
T ss_pred HH--------HhcCCCCE-EEecCcc-CC----CCcCHHHHHHHHHHHHhhCCCCcEEEeC
Confidence 99 99999998 9999998 21 1123455689999999999988998754
No 27
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.48 E-value=1.9e-12 Score=121.22 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=139.6
Q ss_pred CcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHH
Q 015179 99 YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNH 178 (412)
Q Consensus 99 ~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~ 178 (412)
|..+++.+|.|+ ++..|+++++|+++||.+..-.. .|.. . .|.|.... ..++..+.+.++
T Consensus 3 W~~~ep~~G~~n---~~~~D~~~~~a~~~gi~v~gH~l-~W~~--~---~P~W~~~~-----------~~~~~~~~~~~~ 62 (254)
T smart00633 3 WDSTEPSRGQFN---FSGADAIVNFAKENGIKVRGHTL-VWHS--Q---TPDWVFNL-----------SKETLLARLENH 62 (254)
T ss_pred cccccCCCCccC---hHHHHHHHHHHHHCCCEEEEEEE-eecc--c---CCHhhhcC-----------CHHHHHHHHHHH
Confidence 556788999998 88999999999999999843211 1321 1 24675321 135778899999
Q ss_pred HHHHHhcccccccccccCCCceEEeeeccCCCCCCCC-----C-hhHH-HHHHHHHHHHHHhcCCCCeEEeccccccCCC
Q 015179 179 VKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDP-----S-GTLL-QEWIKEMAAHVKSIDNHHLLEVGLEGFYGES 251 (412)
Q Consensus 179 ~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~-----~-~~~~-~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~ 251 (412)
++.+++| |++. |..|+++|||...... . .+.+ .+|+...++++|+.||+..+++..-+.....
T Consensus 63 i~~v~~r--------y~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~ 132 (254)
T smart00633 63 IKTVVGR--------YKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPN 132 (254)
T ss_pred HHHHHHH--------hCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCcc
Confidence 9999999 9875 7889999999864210 0 0001 2688999999999999988887521111000
Q ss_pred CCccccCCCCCCCCCCccccc---cCCCCcceEee--ecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEE
Q 015179 252 VPERQKYNPNNTPVGTDFITN---NQIPDVDFATI--HIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILI 326 (412)
Q Consensus 252 ~~~~~~~~p~~~~~g~d~~~~---~~~~~iDv~s~--H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~i 326 (412)
... ..-..+++. ...| +|.+++ |.+... + +. .. +.+.++...+ .|+||+|
T Consensus 133 --~k~-------~~~~~~v~~l~~~g~~-iDgiGlQ~H~~~~~--~----~~----~~----~~~~l~~~~~-~g~pi~i 187 (254)
T smart00633 133 --AKR-------QAIYELVKKLKAKGVP-IDGIGLQSHLSLGS--P----NI----AE----IRAALDRFAS-LGLEIQI 187 (254)
T ss_pred --HHH-------HHHHHHHHHHHHCCCc-cceeeeeeeecCCC--C----CH----HH----HHHHHHHHHH-cCCceEE
Confidence 000 000111111 1122 677766 443211 1 11 11 3333333344 7999999
Q ss_pred EecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCccccCC
Q 015179 327 GEFGKSYKYPGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGMTNFGD 382 (412)
Q Consensus 327 gE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~~~~~~ 382 (412)
+|+.+.... +.+.|+++++.++..+.+. ..+.|.++|.+.+. .+|..
T Consensus 188 TE~dv~~~~---~~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~--~~W~~ 234 (254)
T smart00633 188 TELDISGYP---NPQAQAADYEEVFKACLAH----PAVTGVTVWGVTDK--YSWLD 234 (254)
T ss_pred EEeecCCCC---cHHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccC--CcccC
Confidence 999998763 2367888999988877665 34789999999876 35644
No 28
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=2.4e-12 Score=128.35 Aligned_cols=114 Identities=26% Similarity=0.349 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccc----cCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhh
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQ----VSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYV 149 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~----~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~ 149 (412)
.++++..++++|||+||+ +++ |..++ .+|.......+..||++|++|.+.||+|++++|. ..++++...
T Consensus 75 ~~~~~~~ik~~G~n~VRi-Pi~---~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~---~~~~~~~~~ 147 (407)
T COG2730 75 TEEDFDQIKSAGFNAVRI-PIG---YWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHG---YPGGNNGHE 147 (407)
T ss_pred hhhHHHHHHHcCCcEEEc-ccc---hhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecc---cCCCCCCcC
Confidence 489999999999999999 333 11222 2444443556669999999999999999999995 233332110
Q ss_pred hhHHhhCCCCCCcCccCC-CHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCC
Q 015179 150 EWARERGQSLKNEDDFYT-NAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 211 (412)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~ 211 (412)
. .+ ....|. ..+.++++.+.|+.++.| |++.+.|+++++.|||+.
T Consensus 148 ~----s~-----~~~~~~~~~~~~~~~~~~w~~ia~~--------f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 148 H----SG-----YTSDYKEENENVEATIDIWKFIANR--------FKNYDTVIGFELINEPNG 193 (407)
T ss_pred c----cc-----ccccccccchhHHHHHHHHHHHHHh--------ccCCCceeeeeeecCCcc
Confidence 0 01 011222 356678899999999999 999999999999999995
No 29
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=99.36 E-value=9.7e-13 Score=102.27 Aligned_cols=75 Identities=29% Similarity=0.542 Sum_probs=47.1
Q ss_pred ccCCCceEEeeeccC-CCCCC--------CCChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCC
Q 015179 194 YKDDPTIFAWELMNE-ARCPT--------DPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTP 264 (412)
Q Consensus 194 y~~~p~v~~wel~NE-p~~~~--------~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~ 264 (412)
|+++|+|++|||+|| |+... ....+.+.+|+++++.+||++||+++|++|..+. . +
T Consensus 5 ~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~---~-----------~- 69 (88)
T PF12876_consen 5 FGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGFWGG---D-----------W- 69 (88)
T ss_dssp TT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B--S---------------T-
T ss_pred hcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeecccC---C-----------H-
Confidence 999999999999999 66211 1123678999999999999999999999875321 0 0
Q ss_pred CCCccccccCCCCcceEeeecC
Q 015179 265 VGTDFITNNQIPDVDFATIHIY 286 (412)
Q Consensus 265 ~g~d~~~~~~~~~iDv~s~H~Y 286 (412)
.. ......+.+||++||.|
T Consensus 70 --~~-~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 --ED-LEQLQAENLDVISFHPY 88 (88)
T ss_dssp --TH-HHHS--TT-SSEEB-EE
T ss_pred --HH-HHHhchhcCCEEeeecC
Confidence 01 22233578899999998
No 30
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=99.34 E-value=1.8e-12 Score=132.21 Aligned_cols=279 Identities=17% Similarity=0.187 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHH-HcCCCEEEecc-ccCCCCcccc-cCCCC--CChhHHHHHHHHHHHHHHcCCEEEEecccCCcc--CC
Q 015179 71 KAKVTAAFQQAT-KYGMNIARTWA-FSDGGYRALQ-VSPGS--YNEDTFKALDFVVAEAREYGVYVILSLVNNFKE--YG 143 (412)
Q Consensus 71 ~~~~~~~l~~l~-~~G~N~vR~~~-~~~~~~~~~~-~~~g~--~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~--~g 143 (412)
+.++...+..++ +.||..||+|. |+|......+ ...|. || |..+|+++|.+.++||+++++|.-.... .+
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~ 114 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGFMPMALASG 114 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS
T ss_pred hHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEechhhhcCC
Confidence 567888888887 88999999975 5543211112 12221 56 8999999999999999999999631110 11
Q ss_pred CchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHH----HHHHhcccccccccccCCC-ceEEeeeccCCCCCCC---C
Q 015179 144 GRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHV----KAVLTRINSITGVAYKDDP-TIFAWELMNEARCPTD---P 215 (412)
Q Consensus 144 g~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~v~r~n~~~g~~y~~~p-~v~~wel~NEp~~~~~---~ 215 (412)
....+ .| ......|.-.+.|.+++ +++++| |+.+. .-..||+||||+.... .
T Consensus 115 ~~~~~-~~-----------~~~~~pp~~~~~W~~lv~~~~~h~~~R--------YG~~ev~~W~fEiWNEPd~~~f~~~~ 174 (486)
T PF01229_consen 115 YQTVF-WY-----------KGNISPPKDYEKWRDLVRAFARHYIDR--------YGIEEVSTWYFEIWNEPDLKDFWWDG 174 (486)
T ss_dssp --EET-TT-----------TEE-S-BS-HHHHHHHHHHHHHHHHHH--------HHHHHHTTSEEEESS-TTSTTTSGGG
T ss_pred CCccc-cc-----------cCCcCCcccHHHHHHHHHHHHHHHHhh--------cCCccccceeEEeCcCCCcccccCCC
Confidence 11000 00 00111233344455554 455555 55321 1235799999997532 1
Q ss_pred ChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCC-CCCCccccccCCCCcceEeeecCCCCCCCCC
Q 015179 216 SGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNT-PVGTDFITNNQIPDVDFATIHIYPEQWLPPG 294 (412)
Q Consensus 216 ~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~-~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~ 294 (412)
+.+++.++++..+.+||+++|+..|- | .++... ..+ | ....++.+....| +|++|+|.|+.......
T Consensus 175 ~~~ey~~ly~~~~~~iK~~~p~~~vG-G-p~~~~~-~~~--------~~~~~l~~~~~~~~~-~DfiS~H~y~~~~~~~~ 242 (486)
T PF01229_consen 175 TPEEYFELYDATARAIKAVDPELKVG-G-PAFAWA-YDE--------WCEDFLEFCKGNNCP-LDFISFHSYGTDSAEDI 242 (486)
T ss_dssp -HHHHHHHHHHHHHHHHHH-TTSEEE-E-EEEETT--TH--------HHHHHHHHHHHCT----SEEEEEEE-BESESE-
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCccc-C-cccccc-HHH--------HHHHHHHHHhcCCCC-CCEEEEEeccccccccc
Confidence 23568899999999999999998763 3 222110 000 1 0111222222333 69999999986422100
Q ss_pred C----CChHHHHHHHHHHHHHHHHHhhh--cCCCcEEEEecCCCCCCCCC--ChHHHHHHHHHHHHHHHHhhhcCCCccc
Q 015179 295 N----TSDEIQLAFVNRWIQAHIQDSDS--ILKKPILIGEFGKSYKYPGY--SEQKRNSYFQKVYDAIYDCAKSKGPCGG 366 (412)
Q Consensus 295 ~----~~~~~~~~~~~~~i~~~~~~~~~--~~gkPv~igE~G~~~~~~g~--~~~~r~~~~~~~~~~~~~~~~~~~~~~G 366 (412)
. .........+.. +....+.... ..++|+.++||+.+...... ....+++++-. .+++.. ++...+
T Consensus 243 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~p~~~~~~tE~n~~~~~~~~~~dt~~~aA~i~k---~lL~~~--~~~l~~ 316 (486)
T PF01229_consen 243 NENMYERIEDSRRLFPE-LKETRPIINDEADPNLPLYITEWNASISPRNPQHDTCFKAAYIAK---NLLSND--GAFLDS 316 (486)
T ss_dssp SS-EEEEB--HHHHHHH-HHHHHHHHHTSSSTT--EEEEEEES-SSTT-GGGGSHHHHHHHHH----HHHHG--GGT-SE
T ss_pred chhHHhhhhhHHHHHHH-HHHHHHHHhhccCCCCceeecccccccCCCcchhccccchhhHHH---HHHHhh--hhhhhh
Confidence 0 000111011111 1111111221 24689999999887764211 11233443322 122222 112456
Q ss_pred ccccccccc------CccccCCCcEEEeCC
Q 015179 367 GLFWQLMTQ------GMTNFGDGYEVVLES 390 (412)
Q Consensus 367 ~~~W~~~~~------g~~~~~~gy~i~~~~ 390 (412)
..+|++.+- ....+.+|+++....
T Consensus 317 ~sywt~sD~Fee~~~~~~pf~ggfGLlt~~ 346 (486)
T PF01229_consen 317 FSYWTFSDRFEENGTPRKPFHGGFGLLTKL 346 (486)
T ss_dssp EEES-SBS---TTSS-SSSSSS-S-SEECC
T ss_pred hhccchhhhhhccCCCCCceecchhhhhcc
Confidence 888999862 224567899998865
No 31
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=99.28 E-value=4.5e-10 Score=111.32 Aligned_cols=284 Identities=16% Similarity=0.214 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-C--CCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-P--GSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~--g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
...+.+|++.|+++|+++.|+ ..+ |..+-|. . +..|+++++.+..+|+.+.++||.++++|.. |+.
T Consensus 90 Yh~ykeDv~Lmk~lgv~afRF-SIs---WSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfH-wDl------ 158 (524)
T KOG0626|consen 90 YHRYKEDVKLMKELGVDAFRF-SIS---WSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFH-WDL------ 158 (524)
T ss_pred hhhhHHHHHHHHHcCCCeEEE-Eee---hHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEec-CCC------
Confidence 457899999999999999999 554 6555443 2 4579999999999999999999999999973 432
Q ss_pred hhhhHHh-hCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC-------------
Q 015179 148 YVEWARE-RGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT------------- 213 (412)
Q Consensus 148 ~~~w~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~------------- 213 (412)
|.+..+ -| =|-+++.++.|.+|.+-+.++ |+++ |-.|-..|||+...
T Consensus 159 -Pq~LeDeYg--------GwLn~~ivedF~~yA~~CF~~--------fGDr--VK~WiT~NEP~v~s~~gY~~G~~aPGr 219 (524)
T KOG0626|consen 159 -PQALEDEYG--------GWLNPEIVEDFRDYADLCFQE--------FGDR--VKHWITFNEPNVFSIGGYDTGTKAPGR 219 (524)
T ss_pred -CHHHHHHhc--------cccCHHHHHHHHHHHHHHHHH--------hccc--ceeeEEecccceeeeehhccCCCCCCC
Confidence 222222 11 134699999999999999999 9995 88899999999421
Q ss_pred CC----------Ch-hHHHHH------HHHHHHHHHhc-CC--CCeEEeccc-cccCCCCCc--c-------ccCCCCCC
Q 015179 214 DP----------SG-TLLQEW------IKEMAAHVKSI-DN--HHLLEVGLE-GFYGESVPE--R-------QKYNPNNT 263 (412)
Q Consensus 214 ~~----------~~-~~~~~~------~~~~~~~Ir~~-dp--~~lV~~g~~-g~~~~~~~~--~-------~~~~p~~~ 263 (412)
++ ++ +.+..- ..++....|+. .+ .-.|.+... .|+-+.++. . ..+.- +|
T Consensus 220 Cs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~-gw 298 (524)
T KOG0626|consen 220 CSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDSKEDKEAAERALDFFL-GW 298 (524)
T ss_pred CCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCChHHHHHHHHHHHhhh-hh
Confidence 00 00 111111 12333333432 11 112222111 122221110 0 00000 01
Q ss_pred CCC----Cccc---c---------------ccCCCCcceEeeecCCCCCCC---C-C-----CCCh--------------
Q 015179 264 PVG----TDFI---T---------------NNQIPDVDFATIHIYPEQWLP---P-G-----NTSD-------------- 298 (412)
Q Consensus 264 ~~g----~d~~---~---------------~~~~~~iDv~s~H~Y~~~~~~---~-~-----~~~~-------------- 298 (412)
... -|+. + .......|++.+.+|...... . + +...
T Consensus 299 ~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 378 (524)
T KOG0626|consen 299 FLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKHLKPPPDPSQPGWSTDSGVDWTLEGNDLI 378 (524)
T ss_pred hhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhccCCCCCCCCcccccccceeeeecccccc
Confidence 000 0110 0 000123599999998742110 0 0 0000
Q ss_pred -----HHHHHHHHHHHHHHHHHhhh-cCCCcEEEEecCCCCCCCC-------CChHHHHHHHHHHHHHHHHhhh-cCCCc
Q 015179 299 -----EIQLAFVNRWIQAHIQDSDS-ILKKPILIGEFGKSYKYPG-------YSEQKRNSYFQKVYDAIYDCAK-SKGPC 364 (412)
Q Consensus 299 -----~~~~~~~~~~i~~~~~~~~~-~~gkPv~igE~G~~~~~~g-------~~~~~r~~~~~~~~~~~~~~~~-~~~~~ 364 (412)
...+......++..+...+. ..+.|++|+|.|......+ .....|..|++..+..+..+.+ .+...
T Consensus 379 ~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv 458 (524)
T KOG0626|consen 379 GPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNV 458 (524)
T ss_pred cccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHhcCCce
Confidence 00001112234444444433 3688999999999987432 2457789999998888877766 45667
Q ss_pred cccccccccccCccccCCCcEEE
Q 015179 365 GGGLFWQLMTQGMTNFGDGYEVV 387 (412)
Q Consensus 365 ~G~~~W~~~~~g~~~~~~gy~i~ 387 (412)
.|++.|++.|+ .+|.+||++.
T Consensus 459 ~GYf~WSLmDn--fEw~~Gy~~R 479 (524)
T KOG0626|consen 459 KGYFVWSLLDN--FEWLDGYKVR 479 (524)
T ss_pred eeEEEeEcccc--hhhhcCcccc
Confidence 89999999999 7787776553
No 32
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=6.1e-10 Score=114.94 Aligned_cols=171 Identities=20% Similarity=0.356 Sum_probs=122.5
Q ss_pred cCCcEEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHH
Q 015179 40 NGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDF 119 (412)
Q Consensus 40 ~g~~l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~ 119 (412)
++..+.+||+++.+.|..+++...+ ++.++++|+.||++|+|+||+-.|. |..++|..|+|+.+ .+|.
T Consensus 4 ~~~~~~~dg~~~~l~gG~y~p~~~p------~~~w~ddl~~mk~~G~N~V~ig~fa---W~~~eP~eG~fdf~---~~D~ 71 (673)
T COG1874 4 DGYSFIRDGRRILLYGGDYYPERWP------RETWMDDLRKMKALGLNTVRIGYFA---WNLHEPEEGKFDFT---WLDE 71 (673)
T ss_pred cccceeeCCceeEEeccccChHHCC------HHHHHHHHHHHHHhCCCeeEeeeEE---eeccCccccccCcc---cchH
Confidence 4556788999999999988765443 3699999999999999999993354 66779999999965 4444
Q ss_pred -HHHHHHHcCCEEEEecccCCccCCCchhhhhhHHh----------hCC---CCCCcCccCCCHHHHHHHHHHHHHHHhc
Q 015179 120 -VVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARE----------RGQ---SLKNEDDFYTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 120 -~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~----------~g~---~~~~~~~~~~~~~~~~~~~~~~~~~v~r 185 (412)
+++.|++.||+||+.--. .++ .|.|... .+. +...+..+++++-.++...+..+.+++|
T Consensus 72 ~~l~~a~~~Gl~vil~t~P----~g~---~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer 144 (673)
T COG1874 72 IFLERAYKAGLYVILRTGP----TGA---PPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRER 144 (673)
T ss_pred HHHHHHHhcCceEEEecCC----CCC---CchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHH
Confidence 599999999999998721 122 2344322 010 1112344566776677777778888887
Q ss_pred ccccccccccCCCceEEeeeccCCCCC-C--CCChhHHHHHHHHHHHHHHhcCC
Q 015179 186 INSITGVAYKDDPTIFAWELMNEARCP-T--DPSGTLLQEWIKEMAAHVKSIDN 236 (412)
Q Consensus 186 ~n~~~g~~y~~~p~v~~wel~NEp~~~-~--~~~~~~~~~~~~~~~~~Ir~~dp 236 (412)
.|+++|+|++|.+-||-.+. . +.+...++.|+++-+..|..++-
T Consensus 145 -------~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~ 191 (673)
T COG1874 145 -------LYGNGPAVITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNE 191 (673)
T ss_pred -------HhccCCceeEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhh
Confidence 58999999999999998772 2 12345567788887777766553
No 33
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.01 E-value=3.7e-09 Score=106.69 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=115.5
Q ss_pred CEEecCCcEEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH
Q 015179 36 FAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK 115 (412)
Q Consensus 36 ~v~v~g~~l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~ 115 (412)
-|..+.+.|.+||+++.+..-..++... .++.|++.++++|+.|+|+|..++|+++ .|+.+|+|+.+..-
T Consensus 19 ~v~yd~~~~~idG~r~~~isGsIHY~R~------~pe~W~~~i~k~k~~Gln~IqtYVfWn~----Hep~~g~y~FsG~~ 88 (649)
T KOG0496|consen 19 NVTYDKRSLLIDGQRFILISGSIHYPRS------TPEMWPDLIKKAKAGGLNVIQTYVFWNL----HEPSPGKYDFSGRY 88 (649)
T ss_pred EEeccccceeecCCeeEEEEeccccccC------ChhhhHHHHHHHHhcCCceeeeeeeccc----ccCCCCcccccchh
Confidence 3677778899999999987665543322 2469999999999999999999999754 58899999988888
Q ss_pred HHHHHHHHHHHcCCEEEEecc----cCCccCCCchhhhhhHHhhCCCCCCcCccCC-CHHHHHHHHHHHHHHHhcccccc
Q 015179 116 ALDFVVAEAREYGVYVILSLV----NNFKEYGGRPRYVEWARERGQSLKNEDDFYT-NAVVKQYYKNHVKAVLTRINSIT 190 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~----~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~v~r~n~~~ 190 (412)
++.++|.++++.|++|++.+- ..| .+||.| -|..... ...|.+ |+..++.++++++.++.+..+
T Consensus 89 DlvkFikl~~~~GLyv~LRiGPyIcaEw-~~GG~P---~wL~~~p-----g~~~Rt~nepfk~~~~~~~~~iv~~mk~-- 157 (649)
T KOG0496|consen 89 DLVKFIKLIHKAGLYVILRIGPYICAEW-NFGGLP---WWLRNVP-----GIVFRTDNEPFKAEMERWTTKIVPMMKK-- 157 (649)
T ss_pred HHHHHHHHHHHCCeEEEecCCCeEEecc-cCCCcc---hhhhhCC-----ceEEecCChHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999985 446 367754 4543311 122444 688899999999999986432
Q ss_pred cccccCCCceEEeeeccCCC
Q 015179 191 GVAYKDDPTIFAWELMNEAR 210 (412)
Q Consensus 191 g~~y~~~p~v~~wel~NEp~ 210 (412)
.-+++---|++-++-||-.
T Consensus 158 -L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 158 -LFASQGGPIILVQIENEYG 176 (649)
T ss_pred -HHhhcCCCEEEEEeechhh
Confidence 1123333477899999975
No 34
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.91 E-value=3.4e-08 Score=95.44 Aligned_cols=245 Identities=19% Similarity=0.326 Sum_probs=145.3
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCC
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQ 157 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~ 157 (412)
.+.+-..-||.+=. .. +.-|..+++.+|+|+ ++..|+++++|+++||.+---.. .|. .. .|.|....
T Consensus 27 ~~~~~~~~Fn~~t~-eN-~~Kw~~~e~~~g~~~---~~~~D~~~~~a~~~g~~vrGH~L-vW~--~~---~P~w~~~~-- 93 (320)
T PF00331_consen 27 YRELFAKHFNSVTP-EN-EMKWGSIEPEPGRFN---FESADAILDWARENGIKVRGHTL-VWH--SQ---TPDWVFNL-- 93 (320)
T ss_dssp HHHHHHHH-SEEEE-SS-TTSHHHHESBTTBEE----HHHHHHHHHHHHTT-EEEEEEE-EES--SS---S-HHHHTS--
T ss_pred HHHHHHHhCCeeee-cc-ccchhhhcCCCCccC---ccchhHHHHHHHhcCcceeeeeE-EEc--cc---ccceeeec--
Confidence 44444556786655 11 112556788888887 78899999999999999874321 121 11 25787532
Q ss_pred CCCCcCccCCCH---HHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC-CC---hhHH-----HHHHH
Q 015179 158 SLKNEDDFYTNA---VVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD-PS---GTLL-----QEWIK 225 (412)
Q Consensus 158 ~~~~~~~~~~~~---~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~-~~---~~~~-----~~~~~ 225 (412)
.-++.. ..++.+.++++.+++| |++...|.+|++.|||..... +. ...+ ..++.
T Consensus 94 ------~~~~~~~~~~~~~~l~~~I~~v~~~--------y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~ 159 (320)
T PF00331_consen 94 ------ANGSPDEKEELRARLENHIKTVVTR--------YKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIA 159 (320)
T ss_dssp ------TTSSBHHHHHHHHHHHHHHHHHHHH--------TTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHH
T ss_pred ------cCCCcccHHHHHHHHHHHHHHHHhH--------hccccceEEEEEeeecccCCCccccccCChhhhcccHhHHH
Confidence 011222 3788899999999999 998778999999999987532 00 0111 24678
Q ss_pred HHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccc---cCCCCcceEee--ecCCCCCCCCCCCChHH
Q 015179 226 EMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITN---NQIPDVDFATI--HIYPEQWLPPGNTSDEI 300 (412)
Q Consensus 226 ~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~---~~~~~iDv~s~--H~Y~~~~~~~~~~~~~~ 300 (412)
.++...|+.+|+...++..-+. ...... . .-...++. ...| ||.+++ |.-... ..
T Consensus 160 ~aF~~A~~~~P~a~L~~NDy~~---~~~~k~----~---~~~~lv~~l~~~gvp-IdgIG~Q~H~~~~~-------~~-- 219 (320)
T PF00331_consen 160 DAFRAAREADPNAKLFYNDYNI---ESPAKR----D---AYLNLVKDLKARGVP-IDGIGLQSHFDAGY-------PP-- 219 (320)
T ss_dssp HHHHHHHHHHTTSEEEEEESST---TSTHHH----H---HHHHHHHHHHHTTHC-S-EEEEEEEEETTS-------SH--
T ss_pred HHHHHHHHhCCCcEEEeccccc---cchHHH----H---HHHHHHHHHHhCCCc-cceechhhccCCCC-------CH--
Confidence 8999999999998888753211 110000 0 00011111 1112 566544 543322 11
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCC---ChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCc
Q 015179 301 QLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGY---SEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGM 377 (412)
Q Consensus 301 ~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~---~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~ 377 (412)
. .+.+.++.... .|.||.|+|+-+....... ....++++++++++.+.+.... .+.|..+|.+.+.
T Consensus 220 --~----~i~~~l~~~~~-~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~-- 288 (320)
T PF00331_consen 220 --E----QIWNALDRFAS-LGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDG-- 288 (320)
T ss_dssp --H----HHHHHHHHHHT-TTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTT--
T ss_pred --H----HHHHHHHHHHH-cCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCC--
Confidence 1 13333444444 8999999999888875321 2567788888888777665311 5899999999987
Q ss_pred ccc
Q 015179 378 TNF 380 (412)
Q Consensus 378 ~~~ 380 (412)
.+|
T Consensus 289 ~sW 291 (320)
T PF00331_consen 289 YSW 291 (320)
T ss_dssp GST
T ss_pred Ccc
Confidence 455
No 35
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=98.66 E-value=3.7e-07 Score=90.24 Aligned_cols=118 Identities=23% Similarity=0.375 Sum_probs=90.3
Q ss_pred EEECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHH
Q 015179 44 FAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAE 123 (412)
Q Consensus 44 l~~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~ 123 (412)
|.+||.|++++|.|+++.+.+. +-.+.+.++-.|+..++.|+|++|+|.- |.|.. |.+.++
T Consensus 330 fkin~~pvflkg~nwip~s~f~-dr~t~~~~~~LL~Sv~e~~MN~lRVWGG------------GvYEs------d~FY~l 390 (867)
T KOG2230|consen 330 FKINDEPVFLKGTNWIPVSMFR-DRENIAKTEFLLDSVAEVGMNMLRVWGG------------GVYES------DYFYQL 390 (867)
T ss_pred EEEcCcEEEeecCCccChHHHH-hhHHHHHHHHHHHHHHHhCcceEEEecC------------ccccc------hhHHHH
Confidence 4479999999999998764433 2223456777899999999999999852 22322 578889
Q ss_pred HHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEe
Q 015179 124 AREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAW 203 (412)
Q Consensus 124 a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~w 203 (412)
|++.||.|+-|+.-.. .-+.++++......+.++.-+.| .+.||+|+.|
T Consensus 391 ad~lGilVWQD~MFAC-----------------------AlYPt~~eFl~sv~eEV~yn~~R--------ls~HpSviIf 439 (867)
T KOG2230|consen 391 ADSLGILVWQDMMFAC-----------------------ALYPTNDEFLSSVREEVRYNAMR--------LSHHPSVIIF 439 (867)
T ss_pred hhhccceehhhhHHHh-----------------------hcccCcHHHHHHHHHHHHHHHHh--------hccCCeEEEE
Confidence 9999999998875211 11334677778888899999999 9999999999
Q ss_pred eeccCCCC
Q 015179 204 ELMNEARC 211 (412)
Q Consensus 204 el~NEp~~ 211 (412)
.--||...
T Consensus 440 sgNNENEa 447 (867)
T KOG2230|consen 440 SGNNENEA 447 (867)
T ss_pred eCCCccHH
Confidence 99999763
No 36
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=98.49 E-value=1.3e-06 Score=80.98 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=79.4
Q ss_pred eEEeeeccCCCCCCC--CChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccC-CC
Q 015179 200 IFAWELMNEARCPTD--PSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQ-IP 276 (412)
Q Consensus 200 v~~wel~NEp~~~~~--~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~-~~ 276 (412)
+-.+..+|||+.... .+.+......+++...+|. +...|......+.+... +....+-.+|..... .-
T Consensus 66 ~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~-------~~g~~Wl~~F~~~~~~~~ 136 (239)
T PF11790_consen 66 SKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGT-------PGGLDWLSQFLSACARGC 136 (239)
T ss_pred ccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCC-------CCccHHHHHHHHhcccCC
Confidence 344678999998542 2344555556777777774 44333211111111000 000111223444433 34
Q ss_pred CcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 015179 277 DVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYD 356 (412)
Q Consensus 277 ~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~ 356 (412)
.+|++++|.|... . ..+..+|++ ..+..+|||||||||.....+..+.+++.+++++++..+.+
T Consensus 137 ~~D~iavH~Y~~~--------~----~~~~~~i~~----~~~~~~kPIWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld~ 200 (239)
T PF11790_consen 137 RVDFIAVHWYGGD--------A----DDFKDYIDD----LHNRYGKPIWITEFGCWNGGSQGSDEQQASFLRQALPWLDS 200 (239)
T ss_pred CccEEEEecCCcC--------H----HHHHHHHHH----HHHHhCCCEEEEeecccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 7899999999321 1 112333433 32236899999999988744444678888999988765532
Q ss_pred hhhcCCCccccccccc
Q 015179 357 CAKSKGPCGGGLFWQL 372 (412)
Q Consensus 357 ~~~~~~~~~G~~~W~~ 372 (412)
. ..+.+++++.+
T Consensus 201 ~----~~VeryawF~~ 212 (239)
T PF11790_consen 201 Q----PYVERYAWFGF 212 (239)
T ss_pred C----CCeeEEEeccc
Confidence 2 33556666663
No 37
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=3e-05 Score=70.51 Aligned_cols=199 Identities=18% Similarity=0.208 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVE 150 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~ 150 (412)
.+.+..||+.++..+. .||++. . | -..++.++.++.+.|+++++.+- +.
T Consensus 62 a~~~~sDLe~l~~~t~-~IR~Y~-s--------------D---Cn~le~v~pAa~~~g~kv~lGiw-----~t------- 110 (305)
T COG5309 62 ADQVASDLELLASYTH-SIRTYG-S--------------D---CNTLENVLPAAEASGFKVFLGIW-----PT------- 110 (305)
T ss_pred HHHHHhHHHHhccCCc-eEEEee-c--------------c---chhhhhhHHHHHhcCceEEEEEe-----ec-------
Confidence 5689999999999887 899975 2 1 22456788899999999999773 11
Q ss_pred hHHhhCCCCCCcCccCCCHHHHHHHH-HHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHH
Q 015179 151 WARERGQSLKNEDDFYTNAVVKQYYK-NHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAA 229 (412)
Q Consensus 151 w~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~ 229 (412)
++...... ..++++.. +...+.|...-++||--...+.+..++.+.+..+-.
T Consensus 111 ------------------dd~~~~~~~til~ay~~---------~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrs 163 (305)
T COG5309 111 ------------------DDIHDAVEKTILSAYLP---------YNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRS 163 (305)
T ss_pred ------------------cchhhhHHHHHHHHHhc---------cCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHH
Confidence 11111122 22222222 677789999999999987776677888999999999
Q ss_pred HHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHH
Q 015179 230 HVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWI 309 (412)
Q Consensus 230 ~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i 309 (412)
++++.+-+-+|++- +.|-. |..+.+. +...|++..|.-++ |.. ....+..-.++..-+
T Consensus 164 av~~agy~gpV~T~-dsw~~-------------~~~np~l-----~~~SDfia~N~~aY-wd~--~~~a~~~~~f~~~q~ 221 (305)
T COG5309 164 AVKEAGYDGPVTTV-DSWNV-------------VINNPEL-----CQASDFIAANAHAY-WDG--QTVANAAGTFLLEQL 221 (305)
T ss_pred HHHhcCCCCceeec-cccee-------------eeCChHH-----hhhhhhhhcccchh-ccc--cchhhhhhHHHHHHH
Confidence 99988877777653 22210 1001111 23346666655554 543 111122222332222
Q ss_pred HHHHHHhhhcCCCcEEEEecCCCCCCC--C---CChHHHHHHHHHHH
Q 015179 310 QAHIQDSDSILKKPILIGEFGKSYKYP--G---YSEQKRNSYFQKVY 351 (412)
Q Consensus 310 ~~~~~~~~~~~gkPv~igE~G~~~~~~--g---~~~~~r~~~~~~~~ 351 (412)
+ +++-+.. ..|++||+|.|.+.++. | .+.+.+..+++++.
T Consensus 222 e-~vqsa~g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~ 266 (305)
T COG5309 222 E-RVQSACG-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEIL 266 (305)
T ss_pred H-HHHHhcC-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHH
Confidence 2 2333332 34999999999999964 2 24666777766654
No 38
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.37 E-value=1.6e-05 Score=74.46 Aligned_cols=116 Identities=21% Similarity=0.363 Sum_probs=82.2
Q ss_pred CcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc-CCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHH
Q 015179 99 YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN-NFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKN 177 (412)
Q Consensus 99 ~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~-~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (412)
|..+++.+|.|+ |+.=|++++.|++|||.+-- |+ .|. . ..++|..... ..-+.....+.+
T Consensus 69 we~i~p~~G~f~---Fe~AD~ia~FAr~h~m~lhG--HtLvW~---~--q~P~W~~~~e---------~~~~~~~~~~e~ 129 (345)
T COG3693 69 WEAIEPERGRFN---FEAADAIANFARKHNMPLHG--HTLVWH---S--QVPDWLFGDE---------LSKEALAKMVEE 129 (345)
T ss_pred cccccCCCCccC---ccchHHHHHHHHHcCCeecc--ceeeec---c--cCCchhhccc---------cChHHHHHHHHH
Confidence 566778889888 77889999999999998532 22 121 1 1346653210 223778888999
Q ss_pred HHHHHHhcccccccccccCCCceEEeeeccCCCCCCCC-------ChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 178 HVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDP-------SGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 178 ~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~-------~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
++..+++| |++. +.+|++.||+...... .+-.-.++++..+...|+.||+...++.
T Consensus 130 hI~tV~~r--------Ykg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~N 192 (345)
T COG3693 130 HIKTVVGR--------YKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIN 192 (345)
T ss_pred HHHHHHHh--------ccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEee
Confidence 99999999 9996 8999999999873210 0011235677888899999998877764
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.36 E-value=1.8e-05 Score=68.86 Aligned_cols=140 Identities=17% Similarity=0.310 Sum_probs=94.2
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEe-cc-ccCCC-CcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCc
Q 015179 69 STKAKVTAAFQQATKYGMNIART-WA-FSDGG-YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGR 145 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~-~~-~~~~~-~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~ 145 (412)
.+.++|++.|+.|++.|+++|=+ |. +.+.. ++. +-.++.+....-+.|+.+++.|+++||+|.+.|...
T Consensus 17 ~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps-~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~------- 88 (166)
T PF14488_consen 17 WTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPS-KLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD------- 88 (166)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCc-cccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC-------
Confidence 35689999999999999999855 21 21111 110 001222333345689999999999999999999631
Q ss_pred hhhhhhHHhhCCCCCCcCccCCCHH-HHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 146 PRYVEWARERGQSLKNEDDFYTNAV-VKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 146 ~~~~~w~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
+.|-.. .+.+ ..+.-+.....+.++ |++||++-+|=|-.|+..... ...+.+
T Consensus 89 ---~~~w~~------------~~~~~~~~~~~~v~~el~~~--------yg~h~sf~GWYip~E~~~~~~----~~~~~~ 141 (166)
T PF14488_consen 89 ---PDYWDQ------------GDLDWEAERNKQVADELWQR--------YGHHPSFYGWYIPYEIDDYNW----NAPERF 141 (166)
T ss_pred ---chhhhc------------cCHHHHHHHHHHHHHHHHHH--------HcCCCCCceEEEecccCCccc----chHHHH
Confidence 011100 0111 122233466777788 999999999999999987532 225567
Q ss_pred HHHHHHHHhcCCCCeEEec
Q 015179 225 KEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 225 ~~~~~~Ir~~dp~~lV~~g 243 (412)
+.+...++++.|+.+|++.
T Consensus 142 ~~l~~~lk~~s~~~Pv~IS 160 (166)
T PF14488_consen 142 ALLGKYLKQISPGKPVMIS 160 (166)
T ss_pred HHHHHHHHHhCCCCCeEEe
Confidence 8888999999999999875
No 40
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=98.10 E-value=0.00067 Score=65.89 Aligned_cols=266 Identities=16% Similarity=0.182 Sum_probs=110.5
Q ss_pred HHcCCCEEEecccc----CC-------CC---cccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 82 TKYGMNIARTWAFS----DG-------GY---RALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 82 ~~~G~N~vR~~~~~----~~-------~~---~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
+.+|+|.+|+-+-. .+ .| +.+.+.++.||-+.=..=..++++|+++|+..++-+.++ +
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aFSNS--P------ 128 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAFSNS--P------ 128 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE-SS--S------
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEeecC--C------
Confidence 45899999994321 00 01 122344566652211122258899999999988866542 1
Q ss_pred hhhhHHhhCCCCCC--cCccCCCHHHHHHHHHHHHHHHhcccccccccccCCC-ceEEeeeccCCCCCCC--------CC
Q 015179 148 YVEWARERGQSLKN--EDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDP-TIFAWELMNEARCPTD--------PS 216 (412)
Q Consensus 148 ~~~w~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p-~v~~wel~NEp~~~~~--------~~ 216 (412)
|-|+...|..... ..... .++..+.|..|+..++++ |+++- .|-..+.+|||...-. .+
T Consensus 129 -P~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~--------~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~ 198 (384)
T PF14587_consen 129 -PWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKH--------YKKWGINFDYISPFNEPQWNWAGGSQEGCHFT 198 (384)
T ss_dssp --GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHH--------HHCTT--EEEEE--S-TTS-GG--SS-B----
T ss_pred -CHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHH--------HHhcCCccceeCCcCCCCCCCCCCCcCCCCCC
Confidence 2233322221100 01111 356778899999999999 75542 5666799999986410 12
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCeEEeccccc----cCCCCC--cc-----ccCCCCCCCCCCccccccCCCCc-ceEeee
Q 015179 217 GTLLQEWIKEMAAHVKSIDNHHLLEVGLEGF----YGESVP--ER-----QKYNPNNTPVGTDFITNNQIPDV-DFATIH 284 (412)
Q Consensus 217 ~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~----~~~~~~--~~-----~~~~p~~~~~g~d~~~~~~~~~i-Dv~s~H 284 (412)
.+....+++.+.+++++...+..|+++-.+- +..... ++ ..++|. ...++. ..+++ .+++-|
T Consensus 199 ~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~~l~~~~~~~~~r~~~i~~ff~~~----s~~yi~--~l~~v~~~i~~H 272 (384)
T PF14587_consen 199 NEEQADVIRALDKALKKRGLSTKISACEAGDWEYLYKTDKNDWGRGNQIEAFFNPD----SSTYIG--DLPNVPNIISGH 272 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGGGGS---S-TTS---HHHHHHSTT----STT--T--T-TTEEEEEEE-
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEecchhhHHHHhhccCCchhhhhhHHhhcCCC----chhhhh--ccccchhheeec
Confidence 3567888999999999988887777754432 111000 00 001111 011111 12332 579999
Q ss_pred cCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhc-CCCcEEEEecCCCCCCCCC---ChHHHHHHHHH---HHHHHHHh
Q 015179 285 IYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSI-LKKPILIGEFGKSYKYPGY---SEQKRNSYFQK---VYDAIYDC 357 (412)
Q Consensus 285 ~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~gkPv~igE~G~~~~~~g~---~~~~r~~~~~~---~~~~~~~~ 357 (412)
.|-..+ + ...+...+.-+.+. +++. .+..++.+||....+..+. .-..|+..|+. +...|+.-
T Consensus 273 sYwt~~------~-~~~l~~~R~~~~~~---~~~~~~~~~~wqtE~~il~~~~~~~~~~g~~~~~~m~~aLy~arviH~D 342 (384)
T PF14587_consen 273 SYWTDS------P-WDDLRDIRKQLADK---LDKYSPGLKYWQTEYCILGDNYEIIEGGGYDRDLGMDTALYVARVIHND 342 (384)
T ss_dssp -TT-SS------S-HHHHHHHHHHHHHH---HHTTSS--EEEE----S----TTT-SSS-HHHHHHH--HHHHHHHHHHH
T ss_pred ccccCC------C-HHHHHHHHHHHHHH---HHhhCcCCceeeeeeeeccCCcccccCCCcccchhHHHHHHHHHHHHhh
Confidence 994331 1 22333333333332 2331 3889999999998874221 11224444433 22334444
Q ss_pred hhcCCCccccccccccccCccccCCCc
Q 015179 358 AKSKGPCGGGLFWQLMTQGMTNFGDGY 384 (412)
Q Consensus 358 ~~~~~~~~G~~~W~~~~~g~~~~~~gy 384 (412)
+.. .+...|-+|.-... .+|.||.
T Consensus 343 L~~-anassW~wW~a~~~--~~ykdgl 366 (384)
T PF14587_consen 343 LTY-ANASSWQWWTAISP--YDYKDGL 366 (384)
T ss_dssp HHT-S--SEEEEEESEES--S--SSSS
T ss_pred hhh-cccchhHHHHHhcc--ccccCce
Confidence 433 23678888876654 4555553
No 41
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=0.00048 Score=65.22 Aligned_cols=162 Identities=14% Similarity=0.165 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCC-CceEEeeeccCCCCCCC-----CChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 169 AVVKQYYKNHVKAVLTRINSITGVAYKDD-PTIFAWELMNEARCPTD-----PSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 169 ~~~~~~~~~~~~~~v~r~n~~~g~~y~~~-p~v~~wel~NEp~~~~~-----~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
++....+.+++...|.- ++++ -.+-+..+.|||+...+ .+.++..+++++ ..+.+..+.-|+.
T Consensus 145 ~e~Ya~yA~~l~~fv~~--------m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~q---yl~si~~~~rV~~ 213 (433)
T COG5520 145 YEKYADYADYLNDFVLE--------MKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQ---YLASINAEMRVII 213 (433)
T ss_pred hhHhHHHHHHHHHHHHH--------HHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHH---hhhhhccccEEec
Confidence 45556666677666665 6665 35778899999997522 123344444443 4444443444443
Q ss_pred ccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCC
Q 015179 243 GLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKK 322 (412)
Q Consensus 243 g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gk 322 (412)
- +.+. +.|+ +. ..-+.......++|++.+|.|...-.. . . ..+..++- .+|
T Consensus 214 p-es~~---------~~~~-~~-dp~lnDp~a~a~~~ilg~H~Ygg~v~~-----~----------p-~~lak~~~-~gK 264 (433)
T COG5520 214 P-ESFK---------DLPN-MS-DPILNDPKALANMDILGTHLYGGQVSD-----Q----------P-YPLAKQKP-AGK 264 (433)
T ss_pred c-hhcc---------cccc-cc-cccccCHhHhcccceeEeeeccccccc-----c----------h-hhHhhCCC-cCC
Confidence 2 1211 1222 10 000111123567999999999864211 0 0 11111222 589
Q ss_pred cEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcCCCcccccccccccc
Q 015179 323 PILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQ 375 (412)
Q Consensus 323 Pv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~ 375 (412)
-||.+|.-.....++. ++| +.+ .+...++.....++ +.|+.+|.+..+
T Consensus 265 dlwmte~y~~esd~~s--~dr-~~~-~~~~hi~~gm~~gg-~~ayv~W~i~~~ 312 (433)
T COG5520 265 DLWMTECYPPESDPNS--ADR-EAL-HVALHIHIGMTEGG-FQAYVWWNIRLD 312 (433)
T ss_pred ceEEeecccCCCCCCc--chH-HHH-HHHHHHHhhccccC-ccEEEEEEEeec
Confidence 9999999877776543 233 222 34445555555554 889999998753
No 42
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=97.55 E-value=0.0022 Score=65.40 Aligned_cols=172 Identities=15% Similarity=0.113 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCCC-ceEEeeeccCCCCCC---------CCChhHHHHHHHH-HHHHHHhcCC-
Q 015179 169 AVVKQYYKNHVKAVLTRINSITGVAYKDDP-TIFAWELMNEARCPT---------DPSGTLLQEWIKE-MAAHVKSIDN- 236 (412)
Q Consensus 169 ~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p-~v~~wel~NEp~~~~---------~~~~~~~~~~~~~-~~~~Ir~~dp- 236 (412)
++..+.|.+|+.+.++. |+++- .|.+.-+.|||.... ..+++..++|++. +..++++..+
T Consensus 200 ~~y~~~yA~Y~vkfi~a--------Y~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g 271 (496)
T PF02055_consen 200 DEYYQAYADYFVKFIQA--------YKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG 271 (496)
T ss_dssp SHHHHHHHHHHHHHHHH--------HHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-
T ss_pred chhHHHHHHHHHHHHHH--------HHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 46677788888888887 88763 577778899998521 1135667888876 8899999877
Q ss_pred -CCeEEeccccccCCCCCccccCCCCCCCCCCcccc-ccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 015179 237 -HHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFIT-NNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQ 314 (412)
Q Consensus 237 -~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~-~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 314 (412)
+.-|.+..+.... .|. | ....+. ..+.+.+|.+++|.|...-. ... +.+.
T Consensus 272 ~d~kI~~~D~n~~~---------~~~-~--~~~il~d~~A~~yv~GiA~HwY~g~~~-------~~~-------l~~~-- 323 (496)
T PF02055_consen 272 KDVKILIYDHNRDN---------LPD-Y--ADTILNDPEAAKYVDGIAFHWYGGDPS-------PQA-------LDQV-- 323 (496)
T ss_dssp TTSEEEEEEEEGGG---------TTH-H--HHHHHTSHHHHTTEEEEEEEETTCS-H-------CHH-------HHHH--
T ss_pred CceEEEEEecCCcc---------cch-h--hhhhhcChhhHhheeEEEEECCCCCch-------hhH-------HHHH--
Confidence 4444432221110 010 1 000111 11235799999999975310 011 2111
Q ss_pred HhhhcCCCcEEEEecCCCCCCCC----CChHHHH-HHHHHHHHHHHHhhhcCCCccccccccccc--cCccccCCC
Q 015179 315 DSDSILKKPILIGEFGKSYKYPG----YSEQKRN-SYFQKVYDAIYDCAKSKGPCGGGLFWQLMT--QGMTNFGDG 383 (412)
Q Consensus 315 ~~~~~~gkPv~igE~G~~~~~~g----~~~~~r~-~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~--~g~~~~~~g 383 (412)
.++..+|.++.+|........+ ...=.|. ++...++ ..+.. + ..||+.|.+.- +|.|+|.++
T Consensus 324 -h~~~P~k~l~~TE~~~g~~~~~~~~~~g~w~~~~~y~~~ii----~~lnn-~-~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 324 -HNKFPDKFLLFTEACCGSWNWDTSVDLGSWDRAERYAHDII----GDLNN-W-VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp -HHHSTTSEEEEEEEESS-STTS-SS-TTHHHHHHHHHHHHH----HHHHT-T-EEEEEEEESEBETTS---TT--
T ss_pred -HHHCCCcEEEeeccccCCCCcccccccccHHHHHHHHHHHH----HHHHh-h-ceeeeeeeeecCCCCCCcccCC
Confidence 1223799999999865443211 1111232 2333333 33322 2 68999999863 466777443
No 43
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.25 E-value=0.019 Score=55.33 Aligned_cols=208 Identities=16% Similarity=0.255 Sum_probs=112.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCC--Cc-ccccCC----CC-CChhHHHHHHHHHHHHHHcCCEEEEecc--cCC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGG--YR-ALQVSP----GS-YNEDTFKALDFVVAEAREYGVYVILSLV--NNF 139 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~--~~-~~~~~~----g~-~~~~~l~~ld~~i~~a~~~Gi~vil~l~--~~w 139 (412)
.++.+++.++.++++|||+|=+-+...|+ |+ .+.+.. |. .....++-|..+|+.|+++||.|..=+. ...
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 46789999999999999998774443332 21 111111 11 1122477899999999999999875441 000
Q ss_pred ccCCC-chhhhhhHH--hhCCCC-C----CcCccCC--CHHHHHHHHHHHHHHHhcccccccccccCC---CceEEee--
Q 015179 140 KEYGG-RPRYVEWAR--ERGQSL-K----NEDDFYT--NAVVKQYYKNHVKAVLTRINSITGVAYKDD---PTIFAWE-- 204 (412)
Q Consensus 140 ~~~gg-~~~~~~w~~--~~g~~~-~----~~~~~~~--~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~---p~v~~we-- 204 (412)
...+. ....+.|.. ..|... . ....|++ .|++++...+.++.++++- ...|..+-+. |...+++
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Y-dvDGIhlDdy~yp~~~~g~~~~ 175 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNY-DVDGIHLDDYFYPPPSFGYDFP 175 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcC-CCCeEEecccccccccCCCCCc
Confidence 00000 011233421 111110 0 1223444 5899999999999999983 2445433321 1111111
Q ss_pred ------ecc--CCCCC-CC-----CChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccc
Q 015179 205 ------LMN--EARCP-TD-----PSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFI 270 (412)
Q Consensus 205 ------l~N--Ep~~~-~~-----~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~ 270 (412)
-.. +|... .+ .-.+.+..+++++.++||+++|+..+.+...|.++..-. ...+|..
T Consensus 176 ~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~~~~y~----------~~~qD~~ 245 (311)
T PF02638_consen 176 DVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIWNSAYD----------DYYQDWR 245 (311)
T ss_pred cHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecchhhhhh----------heeccHH
Confidence 000 11100 00 012456777899999999999998888765443311100 0113333
Q ss_pred cccCCCCcceEeeecCCC
Q 015179 271 TNNQIPDVDFATIHIYPE 288 (412)
Q Consensus 271 ~~~~~~~iDv~s~H~Y~~ 288 (412)
.-.....+|++-...|-.
T Consensus 246 ~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 246 NWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred HHHhcCCccEEEeeeccc
Confidence 323345689999999954
No 44
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=97.20 E-value=0.00046 Score=65.88 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHcCCEEEEecc
Q 015179 114 FKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 114 l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+++.|.+.+.|++-|+.+++.|-
T Consensus 108 ~~rwd~l~~F~~~tG~~liFgLN 130 (319)
T PF03662_consen 108 MSRWDELNNFAQKTGLKLIFGLN 130 (319)
T ss_dssp ----HHHHHHHHHHT-EEEEEE-
T ss_pred hhHHHHHHHHHHHhCCEEEEEec
Confidence 46899999999999999999996
No 45
>PRK10785 maltodextrin glucosidase; Provisional
Probab=96.59 E-value=0.038 Score=58.20 Aligned_cols=162 Identities=9% Similarity=0.088 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecc-ccCCCCcccccCC-CCCCh--hHHHHHHHHHHHHHHcCCEEEEecccCCccCCC-
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWA-FSDGGYRALQVSP-GSYNE--DTFKALDFVVAEAREYGVYVILSLVNNFKEYGG- 144 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~-~~~~~~~~~~~~~-g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg- 144 (412)
+..-+.+-|+.|+++|+|+|=+-+ |...++..+.... ...|+ ...+.+.++++.|+++||+||+|+--.......
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~ 256 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGDSHP 256 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCCCH
Confidence 556778889999999999999944 3321111111100 00111 135789999999999999999998311000000
Q ss_pred ----------------chhhhhhHHh--hCCC-----CCC-cCccCCCHHHHHHHHHHHHHHHhcccccccccccCC-Cc
Q 015179 145 ----------------RPRYVEWARE--RGQS-----LKN-EDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDD-PT 199 (412)
Q Consensus 145 ----------------~~~~~~w~~~--~g~~-----~~~-~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~-p~ 199 (412)
...|.+|..- .|.. ... +.--+.+|++++.+.+-...++++ +-+. =.
T Consensus 257 ~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~--------Wl~~~~g 328 (598)
T PRK10785 257 WFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRH--------WLKAPYN 328 (598)
T ss_pred HHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHH--------hhcCCCC
Confidence 0011122100 0100 000 011134677777766543345554 3222 13
Q ss_pred eEEe--eeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 200 IFAW--ELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 200 v~~w--el~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
|=+| ++.+|..... ......++++++.+++|+..|+..++
T Consensus 329 iDG~RlDva~~v~~~~--~~~~~~~f~~~~~~~vk~~~pd~~li 370 (598)
T PRK10785 329 IDGWRLDVVHMLGEGG--GARNNLQHVAGITQAAKEENPEAYVL 370 (598)
T ss_pred CcEEEEecHhHhcccc--CccccHHHHHHHHHHHHhhCCCeEEE
Confidence 4444 4455532111 11123467889999999999987664
No 46
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.034 Score=54.16 Aligned_cols=254 Identities=17% Similarity=0.233 Sum_probs=130.1
Q ss_pred HHHHHHHH-HHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhH
Q 015179 74 VTAAFQQA-TKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWA 152 (412)
Q Consensus 74 ~~~~l~~l-~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~ 152 (412)
+...+... ++.|+|.||-++..- +. .+ .-.|+ +.++|++++....+| .-++.+.-.|....... ..|-
T Consensus 6 ~q~ql~t~~~Ei~v~yi~~~~v~h--~~-~q--~~~~~---~t~~d~i~d~~~~~~-~~~ie~~l~~~~l~~~~--~~wq 74 (428)
T COG3664 6 YQFQLRTTDDEIQVNYIRRHGVWH--VN-AQ--KLFYP---FTYIDEIIDTLLDLG-LDLIELFLIWNNLNTKE--HQWQ 74 (428)
T ss_pred HHHhhcchhhhhceeeehhcceee--ee-ec--cccCC---hHHHHHHHHHHHHhc-cHHHHHhhcccchhhhh--hhcc
Confidence 33444444 589999999865431 11 11 12244 678899999999999 33333322222211110 0121
Q ss_pred HhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCC-CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHH
Q 015179 153 RERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDD-PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHV 231 (412)
Q Consensus 153 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~-p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~I 231 (412)
+ +-..+...++.+++++++++.| |+-. -....++++|||+... ..+ ++.+..-...
T Consensus 75 ---~-------n~~~~~~~~dl~~~fl~h~~~~--------vg~e~v~kw~f~~~~~pn~~a--d~~---eyfk~y~~~a 131 (428)
T COG3664 75 ---L-------NVDDPKSVFDLIAAFLKHVIRR--------VGVEFVRKWPFYSPNEPNLLA--DKQ---EYFKLYDATA 131 (428)
T ss_pred ---c-------ccCCcHhHHHHHHHHHHHHHHH--------hChhheeecceeecCCCCccc--chH---HHHHHHHhhh
Confidence 1 0111234788899999999999 5532 2556679999999863 223 3334344444
Q ss_pred HhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCC--CCCC------hHHHHH
Q 015179 232 KSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPP--GNTS------DEIQLA 303 (412)
Q Consensus 232 r~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~--~~~~------~~~~~~ 303 (412)
|+.+|. |-+|. +| .. +. -..+.+ ..+.+|+++.|.|...-... ++.. ....++
T Consensus 132 ~~~~p~--i~vg~-~w-~~---e~----------l~~~~k--~~d~idfvt~~a~~~~av~~~~~~~~~~~l~~~~~~l~ 192 (428)
T COG3664 132 RQRAPS--IQVGG-SW-NT---ER----------LHEFLK--KADEIDFVTELANSVDAVDFSTPGAEEVKLSELKRTLE 192 (428)
T ss_pred hccCcc--eeecc-cc-Cc---HH----------Hhhhhh--ccCcccceeecccccccccccCCCchhhhhhhhhhhhh
Confidence 566765 44442 11 11 10 011222 35678999999997532210 0000 001112
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhhh-cCCCcccccccccccc----Cc-
Q 015179 304 FVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDCAK-SKGPCGGGLFWQLMTQ----GM- 377 (412)
Q Consensus 304 ~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~~~-~~~~~~G~~~W~~~~~----g~- 377 (412)
.+ +.+.+.++... .|+|+++.||-..+...- ..-.+|++..+ |.+.++ .+....+.-+|.+.+- |.
T Consensus 193 ~~-r~~~d~i~~~~--~~~pl~~~~wntlt~~~~---~~n~sy~raa~--i~~~Lr~~g~~v~a~~yW~~sdl~e~~g~~ 264 (428)
T COG3664 193 DL-RGLKDLIQHHS--LGLPLLLTNWNTLTGPRE---PTNGSYVRAAY--IMRLLREAGSPVDAFGYWTNSDLHEEHGPP 264 (428)
T ss_pred HH-HHHHHHHHhcc--CCCcceeecccccCCCcc---ccCceeehHHH--HHHHHHhcCChhhhhhhhhcccccccCCCc
Confidence 11 22333343332 589999999988776421 11223444111 111222 1344567778888762 22
Q ss_pred -cccCCCcEEEe
Q 015179 378 -TNFGDGYEVVL 388 (412)
Q Consensus 378 -~~~~~gy~i~~ 388 (412)
....+|+++..
T Consensus 265 ~~~~~~gfel~~ 276 (428)
T COG3664 265 EAPFVGGFELFA 276 (428)
T ss_pred ccccccceeeec
Confidence 34455777654
No 47
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.50 E-value=0.62 Score=44.75 Aligned_cols=198 Identities=18% Similarity=0.295 Sum_probs=105.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCC---Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGG---YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYG 143 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~---~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~g 143 (412)
+...+++.++.+++.|+|+|=+-+=.+-+ |+. .....|.. ......+.++++.++++|||+|-.+..+=+..-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccCHHHHHHHHHHCCCEEEEEEEEecChHH
Confidence 34689999999999999999883222211 211 11111221 122467899999999999999988753211110
Q ss_pred CchhhhhhHHh--hCCCCC-CcCccCC---CHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCC------
Q 015179 144 GRPRYVEWARE--RGQSLK-NEDDFYT---NAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC------ 211 (412)
Q Consensus 144 g~~~~~~w~~~--~g~~~~-~~~~~~~---~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~------ 211 (412)
.. ..+.|... .|.... ....-|. ++++++...+..+.+++. .|.. | -++-.==|..
T Consensus 90 a~-~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~-------GFdE---I-qfDYIRFP~~~~~~~l 157 (316)
T PF13200_consen 90 AE-AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL-------GFDE---I-QFDYIRFPDEGRLSGL 157 (316)
T ss_pred hh-hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc-------CCCE---E-EeeeeecCCCCccccc
Confidence 00 11234321 111111 1112233 356666666766766653 1222 1 1222222220
Q ss_pred --CC--CC--ChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeec
Q 015179 212 --PT--DP--SGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHI 285 (412)
Q Consensus 212 --~~--~~--~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~ 285 (412)
.. .. ..+.+..+++.+.+.++..+ ..|++..-|.-... +....-|+++.+ ..+++|+++.=.
T Consensus 158 ~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~--v~vSaDVfG~~~~~--------~~~~~iGQ~~~~--~a~~vD~IsPMi 225 (316)
T PF13200_consen 158 DYSENDTEESRVDAITDFLAYAREELHPYG--VPVSADVFGYVAWS--------PDDMGIGQDFEK--IAEYVDYISPMI 225 (316)
T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHhHcC--CCEEEEeccccccc--------CCCCCcCCCHHH--HhhhCCEEEecc
Confidence 00 00 12457888888888887765 44655433321110 011235666654 257899999999
Q ss_pred CCCCCCC
Q 015179 286 YPEQWLP 292 (412)
Q Consensus 286 Y~~~~~~ 292 (412)
||..|.+
T Consensus 226 YPSh~~~ 232 (316)
T PF13200_consen 226 YPSHYGP 232 (316)
T ss_pred cccccCc
Confidence 9987754
No 48
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.00016 Score=70.83 Aligned_cols=232 Identities=19% Similarity=0.343 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCC-----ChhHHHHHHHHHHHHHHhcCCCCeEEecc
Q 015179 170 VVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDP-----SGTLLQEWIKEMAAHVKSIDNHHLLEVGL 244 (412)
Q Consensus 170 ~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~-----~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~ 244 (412)
..-..|..+...++.|+..-.|+.+.+.|.+++|...|++...... ....+.-|.+- ++--..-..+|-.=
T Consensus 203 a~~hLY~hyd~sl~~r~s~~yg~~~l~i~~~~g~~pV~leefGfsta~g~e~s~ayfiw~~l---al~~ggdGaLiwcl- 278 (587)
T COG3934 203 AANHLYRHYDTSLVSRVSTVYGKPYLDIPTIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRL---ALDTGGDGALIWCL- 278 (587)
T ss_pred ccchhhhhccCChhheeeeeecchhhccchhcccceeeccccCCcccccccccchhhhhhhh---HHhhcCCceEEEEe-
Confidence 3334455666777788888888889999999999999999865321 12335555444 11111112343321
Q ss_pred cccc-CCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCCh-----HHHHHHHHHHHHHHHHHhhh
Q 015179 245 EGFY-GESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSD-----EIQLAFVNRWIQAHIQDSDS 318 (412)
Q Consensus 245 ~g~~-~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~ 318 (412)
.++. +..++ -.++.|. ..+...++....+.+|+-.+|..+..|.....|++ +...-....+.++++..+++
T Consensus 279 sdf~~gsdd~-ey~w~p~--el~fgiIradgpek~~a~~~~~fsn~~kdI~~~Sfq~p~~e~~eikp~~~va~~~fv~e~ 355 (587)
T COG3934 279 SDFHLGSDDS-EYTWGPM--ELEFGIIRADGPEKIDAMTLHIFSNNWKDISMCSFQPPTYEAGEIKPRDYVAQHIFVAER 355 (587)
T ss_pred cCCccCCCCC-CCccccc--cceeeeecCCCchhhhHHHHHHhccccceeeeecccCcccccceecchHhhhhceecHhh
Confidence 1221 11111 1122221 01111222233445677777877766654322221 11111123356777777776
Q ss_pred cCCCcEEEEecCCCCCC----CCCChHHHHHHHHHHHHHHHHhhhcCCCccccccccccccCc-----------------
Q 015179 319 ILKKPILIGEFGKSYKY----PGYSEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMTQGM----------------- 377 (412)
Q Consensus 319 ~~gkPv~igE~G~~~~~----~g~~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~~g~----------------- 377 (412)
..+|+.+-+++..-.. +|++...|+..++++++.-.......+...|...|.+...+.
T Consensus 356 -~~~~Lf~rv~nl~f~~~~~~~gqpt~~rd~d~~~~l~d~kllmipsgpt~g~Ttw~~llk~vvn~v~~v~Fs~p~ts~h 434 (587)
T COG3934 356 -LNKPLFIRVFNLIFDGRQFTPGQPTTYRDRDYKTMLDDAKLLMIPSGPTAGVTTWAWLLKGVVNQVPDVWFSKPDTSYH 434 (587)
T ss_pred -hccchhhhcchhHhhhhhhcCCCceEEeccchhhcCCchhheeecCCcccchhHHHHHhhhhhccccceeecCCceeec
Confidence 8999999999976653 455555666666654432211222335578888887754221
Q ss_pred ----cccCCCcEEEeCCCccHHHHHHHHHHHHhhccC
Q 015179 378 ----TNFGDGYEVVLESSPSTANIINQQSLRLAVLSS 410 (412)
Q Consensus 378 ----~~~~~gy~i~~~~~~~~~~~i~~~~~~~~~~~~ 410 (412)
-.|+.-|++. +.++.....|.+++.+++.|+.
T Consensus 435 ~s~th~wq~lFGv~-di~~~gs~g~~a~~~nVkllg~ 470 (587)
T COG3934 435 GSPTHEWQGLFGVF-DIDASGSAGIKAHAANVKLLGK 470 (587)
T ss_pred CCCchhhHHhhCCC-CCccccccccccchhhhccccc
Confidence 1333335543 3466677788888888887763
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.16 E-value=0.14 Score=54.12 Aligned_cols=165 Identities=13% Similarity=0.157 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCCEEEeccccC----C--CCcc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCCc-
Q 015179 74 VTAAFQQATKYGMNIARTWAFSD----G--GYRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNFK- 140 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~----~--~~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w~- 140 (412)
.++.++.|+++|+|+|=+-+..+ . +|.. +.+. ..|. ..+.+.++|+.|+++||+||+|+- ....
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~-~~~G--t~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPT-SRFG--TPDDFMYFVDACHQAGIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccCcCCcc
Confidence 34445999999999999944221 1 1211 1111 1222 256899999999999999999973 2100
Q ss_pred ----cCCCchhhhhhHHhhCC--CCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCC--
Q 015179 141 ----EYGGRPRYVEWARERGQ--SLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCP-- 212 (412)
Q Consensus 141 ----~~gg~~~~~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~-- 212 (412)
.+.+.+.|..-....+. ......--+.++++++.+.+.++..++. --+.|-++-.-+.++.++-.+++...
T Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~e-y~iDG~R~D~v~~~~~~~~~~~~~~~~~ 314 (613)
T TIGR01515 236 HGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEF-YHIDGLRVDAVASMLYLDYSRDEGEWSP 314 (613)
T ss_pred chhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcCHHHhhhhccccccccccc
Confidence 01111101000000000 0000011134688888888888888875 11222111111234333333333210
Q ss_pred ---CCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 213 ---TDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 213 ---~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
.......-..+++++.+.||+..|+.+++.
T Consensus 315 ~~~~~~~~~~~~~fl~~~~~~v~~~~p~~~lia 347 (613)
T TIGR01515 315 NEDGGRENLEAVDFLRKLNQTVYEAFPGVVTIA 347 (613)
T ss_pred cccCCcCChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 000012246788999999999999876653
No 50
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.01 E-value=0.22 Score=53.82 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCCCEEEeccccC----CC--Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCCc-
Q 015179 74 VTAAFQQATKYGMNIARTWAFSD----GG--YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNFK- 140 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~----~~--~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w~- 140 (412)
.++.++.|+++|+|+|=+-+..+ .. |.. +.+.+ .|. ..+.+.++|+.|+++||+||+|+- ....
T Consensus 268 ~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~-~~G--t~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~ 344 (726)
T PRK05402 268 ADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTS-RFG--TPDDFRYFVDACHQAGIGVILDWVPAHFPKDA 344 (726)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 44446999999999999954321 11 111 11111 122 257899999999999999999973 2111
Q ss_pred ----cCCCchhhhhhHHhhCC-C-CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeecc-----CC
Q 015179 141 ----EYGGRPRYVEWARERGQ-S-LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMN-----EA 209 (412)
Q Consensus 141 ----~~gg~~~~~~w~~~~g~-~-~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~N-----Ep 209 (412)
.+.+.+.|..-....+. + .....-=+.++++++.+.+.++..++. --+.|-++-.-..++.++-.. .|
T Consensus 345 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e-~~iDG~R~D~v~~~~~~~~~~~~g~~~~ 423 (726)
T PRK05402 345 HGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEE-FHIDGLRVDAVASMLYLDYSRKEGEWIP 423 (726)
T ss_pred cchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHH-hCCcEEEECCHHHhhhcccccccccccc
Confidence 01111101000000000 0 000011234688888888888888875 011221110001111111110 01
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 210 RCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
+............+++++...||+..|+.+++
T Consensus 424 ~~~~~~~~~~~~~fl~~~~~~~~~~~p~~~li 455 (726)
T PRK05402 424 NIYGGRENLEAIDFLRELNAVVHEEFPGALTI 455 (726)
T ss_pred ccccCcCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 11000011234678899999999999987655
No 51
>PRK12313 glycogen branching enzyme; Provisional
Probab=95.98 E-value=0.2 Score=53.20 Aligned_cols=162 Identities=14% Similarity=0.171 Sum_probs=80.7
Q ss_pred HHHHHHHHHHcCCCEEEeccccC----C--CCcc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCCc-
Q 015179 74 VTAAFQQATKYGMNIARTWAFSD----G--GYRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNFK- 140 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~----~--~~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w~- 140 (412)
.++.|+.|+++|+|+|=+.++.+ . +|.. +.+.+ .|. ..+.+.++|+.|+++||+||+|+- ....
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~-~~G--t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTS-RYG--TPEDFMYLVDALHQNGIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCC-CCC--CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCc
Confidence 44456999999999999954321 1 1211 11111 122 257899999999999999999973 1100
Q ss_pred ----cCCCchhhhhhHHh-hCCC--CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeec--cC--C
Q 015179 141 ----EYGGRPRYVEWARE-RGQS--LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELM--NE--A 209 (412)
Q Consensus 141 ----~~gg~~~~~~w~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~--NE--p 209 (412)
.+.+.+.|. +... .+.. .....--+.++++++.+.+.++..++. --+.|-++-.-+.++..+-. ++ |
T Consensus 250 ~~~~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~-~~iDG~R~D~~~~~~~~d~~~~~~~~~ 327 (633)
T PRK12313 250 DGLAYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDE-YHLDGLRVDAVSNMLYLDYDEEGEWTP 327 (633)
T ss_pred ccccccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH-hCCcEEEEcChhhhhhcccccccCcCC
Confidence 011111110 0000 0000 000011234788888888888888775 11222111100111111110 00 1
Q ss_pred CCC-CCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 210 RCP-TDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 210 ~~~-~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
+.. ..... ....+++++...||+..|+.+++
T Consensus 328 ~~~~~~~~~-~~~~fl~~~~~~v~~~~p~~~li 359 (633)
T PRK12313 328 NKYGGRENL-EAIYFLQKLNEVVYLEHPDVLMI 359 (633)
T ss_pred cccCCCCCc-HHHHHHHHHHHHHHHHCCCeEEE
Confidence 100 00011 24578899999999999986554
No 52
>PLN02161 beta-amylase
Probab=95.96 E-value=0.13 Score=51.74 Aligned_cols=133 Identities=13% Similarity=0.224 Sum_probs=85.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||.+|+.-|=+-++| -.+|. .|++|| |..+.++++++++.||++.+.+ |..=...|+..
T Consensus 115 ~~~al~~~L~~LK~~GVdGVmvDVWW----GiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 115 RLKALTVSLKALKLAGVHGIAVEVWW----GIVERFSPLEFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeee----eeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45678999999999999999994443 23454 578898 8889999999999999977665 53211122211
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.|. .+++-||+|+.- .++ +.-+++-+-|+|.......-+.|.+|+
T Consensus 188 ~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~rn-~EyLSlg~D~~pvl~GRTplq~Y~Dfm 242 (531)
T PLN02161 188 GISLPLWIREIGD--VNKDIYYRDKNG----------------------FSN-NDYLTLGVDQLPLFGGRTAVQCYEDFM 242 (531)
T ss_pred CccCCHHHHhhhc--cCCCceEEcCCC----------------------Ccc-cceeeeecccchhcCCCCHHHHHHHHH
Confidence 25677655332 123446665321 222 345678899999875421125677777
Q ss_pred HHHHHHHHhc
Q 015179 225 KEMAAHVKSI 234 (412)
Q Consensus 225 ~~~~~~Ir~~ 234 (412)
+......+..
T Consensus 243 ~SFr~~F~~~ 252 (531)
T PLN02161 243 LSFSTKFEPY 252 (531)
T ss_pred HHHHHHHHHH
Confidence 7666666554
No 53
>PRK14705 glycogen branching enzyme; Provisional
Probab=95.90 E-value=0.24 Score=55.81 Aligned_cols=166 Identities=13% Similarity=0.196 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccccC----CC--Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cC--
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSD----GG--YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NN-- 138 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~----~~--~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~-- 138 (412)
..++.++.+|++|+|+|-+.+..+ ++ |.. +.+. ..|. ..+.+.++|+.|+++||.||+|+- ..
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~-~ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~d 843 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPT-SRFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD 843 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcC-cccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 345568999999999999954321 11 211 1111 1222 367899999999999999999973 11
Q ss_pred -Cc--cCCCchhhhhhHHhhCCCC-CCcCcc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeecc-----C
Q 015179 139 -FK--EYGGRPRYVEWARERGQSL-KNEDDF-YTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMN-----E 208 (412)
Q Consensus 139 -w~--~~gg~~~~~~w~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~N-----E 208 (412)
|. .+.+.+.|..-....|... .....| |.++++++.+..-+...++. ..+.|-++-.-.+++..+..- .
T Consensus 844 ~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~e-yhiDGfR~Dav~~mly~Dysr~~g~w~ 922 (1224)
T PRK14705 844 SWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDE-FHIDGLRVDAVASMLYLDYSREEGQWR 922 (1224)
T ss_pred hhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHH-hCCCcEEEeehhhhhhccccccccccc
Confidence 10 0111111110000000000 000111 45688888888888888876 112221111112222222221 1
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 209 ARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 209 p~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
|+..+.........+++++.+.|++..|+.+++.
T Consensus 923 pn~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IA 956 (1224)
T PRK14705 923 PNRFGGRENLEAISFLQEVNATVYKTHPGAVMIA 956 (1224)
T ss_pred ccccCCccChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 2211110112356789999999999999866543
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.87 E-value=0.22 Score=51.84 Aligned_cols=149 Identities=19% Similarity=0.239 Sum_probs=79.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC------CCCcc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD------GGYRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFK 140 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~------~~~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~ 140 (412)
+...+.+.|+.|+++|+|+|-+.+..+ -+|.. +.+. ..|. ..+.+.++|+.|+++||+||+|+--...
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~-~~~G--~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPH-NAYG--GPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 455667779999999999999954321 01211 1111 1122 2578999999999999999999732111
Q ss_pred cCCC--chhhhhhHHhhCCCCCCcCccCCCH---HHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCC
Q 015179 141 EYGG--RPRYVEWARERGQSLKNEDDFYTNA---VVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDP 215 (412)
Q Consensus 141 ~~gg--~~~~~~w~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~ 215 (412)
...+ .+.+..|............--+.++ ++++.+.+.++..++. |+=+- +-++.......
T Consensus 186 ~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e--------~~iDG--fR~D~~~~~~~---- 251 (542)
T TIGR02402 186 GPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE--------YHFDG--LRLDAVHAIAD---- 251 (542)
T ss_pred CCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH--------hCCcE--EEEeCHHHhcc----
Confidence 1111 0011111110000000001113345 7777777777777765 44331 11232222111
Q ss_pred ChhHHHHHHHHHHHHHHhcCCC
Q 015179 216 SGTLLQEWIKEMAAHVKSIDNH 237 (412)
Q Consensus 216 ~~~~~~~~~~~~~~~Ir~~dp~ 237 (412)
.....+++++.+.+|++.|+
T Consensus 252 --~~~~~~l~~~~~~~~~~~p~ 271 (542)
T TIGR02402 252 --TSAKHILEELAREVHELAAE 271 (542)
T ss_pred --ccHHHHHHHHHHHHHHHCCC
Confidence 01246789999999999887
No 55
>PLN02705 beta-amylase
Probab=95.68 E-value=0.18 Score=51.67 Aligned_cols=133 Identities=11% Similarity=0.222 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||.+|+.-|=+-++| -.+|. .|++|+ |..+.++++++++.||++.+.| |..=...|...
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWW----GiVE~~~P~~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~ 338 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWW----GIVEGWNPQKYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNV 338 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eEeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcc
Confidence 46789999999999999999994443 23454 578898 8889999999999999976665 53211112111
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.|.. +++-||+|+.- .++ +.-++|-+-++|...+-..-+.|.+|+
T Consensus 339 ~IPLP~WV~e~g~~--nPDifftDr~G----------------------~rn-~EyLSlg~D~~pvl~GRTplq~Y~DFM 393 (681)
T PLN02705 339 MISLPQWVLEIGKD--NQDIFFTDREG----------------------RRN-TECLSWSIDKERVLKGRTGIEVYFDFM 393 (681)
T ss_pred cccCCHHHHHhccc--CCCceeecCCC----------------------Ccc-cceeeeecCcccccCCCCHHHHHHHHH
Confidence 256776654321 22346655321 222 334579999999764321225677777
Q ss_pred HHHHHHHHhc
Q 015179 225 KEMAAHVKSI 234 (412)
Q Consensus 225 ~~~~~~Ir~~ 234 (412)
+.........
T Consensus 394 ~SFr~~F~~f 403 (681)
T PLN02705 394 RSFRSEFDDL 403 (681)
T ss_pred HHHHHHHHHh
Confidence 7666666663
No 56
>PLN02803 beta-amylase
Probab=95.63 E-value=0.17 Score=51.13 Aligned_cols=133 Identities=14% Similarity=0.162 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||.+|+.-|=+-++| --+|. .|++|| |..+.++++++++.||++.+.+ |..=...|...
T Consensus 105 ~~~~l~~~L~~LK~~GVdGVmvDVWW----GiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 177 (548)
T PLN02803 105 KPRAMNASLMALRSAGVEGVMVDAWW----GLVEKDGPMKYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSC 177 (548)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeee----eeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45789999999999999999994443 23454 488899 8889999999999999977665 53211111110
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.+. .+++-||+|+.- .++ +.-+++.+-|+|-..+...-+.|.+|+
T Consensus 178 ~IpLP~WV~e~~~--~~pDi~ftDr~G----------------------~rn-~EyLSlg~D~~pvl~GRTplq~Y~Dfm 232 (548)
T PLN02803 178 SIPLPPWVLEEMS--KNPDLVYTDRSG----------------------RRN-PEYISLGCDSLPVLRGRTPIQVYSDYM 232 (548)
T ss_pred cccCCHHHHHhhh--cCCCceEecCCC----------------------Ccc-cceeccccccchhccCCCHHHHHHHHH
Confidence 24566654332 122345554321 122 345578888888764321125577777
Q ss_pred HHHHHHHHhc
Q 015179 225 KEMAAHVKSI 234 (412)
Q Consensus 225 ~~~~~~Ir~~ 234 (412)
+......+..
T Consensus 233 ~SFr~~F~~~ 242 (548)
T PLN02803 233 RSFRERFKDY 242 (548)
T ss_pred HHHHHHHHHH
Confidence 7666666553
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=95.56 E-value=0.058 Score=46.95 Aligned_cols=67 Identities=16% Similarity=0.236 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecccc-CC----CCcccccCC-CCCCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFS-DG----GYRALQVSP-GSYNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~-~~----~~~~~~~~~-g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+...+.+.++.++++|+|+|-+-+.. .. .+..+.+.. ...++ ...+.+.++++.|+++||+|++|+-
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 45677888899999999999994432 11 111111110 00111 2368899999999999999999985
No 58
>PLN02801 beta-amylase
Probab=95.56 E-value=0.22 Score=50.08 Aligned_cols=132 Identities=12% Similarity=0.233 Sum_probs=84.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||++|+.-|=+-++| --+|. .|++|| |..+.++++.+++.||++.+.+ |..=...|...
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWW----GiVE~~~P~~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~ 107 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWW----GIVESKGPKQYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAV 107 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45689999999999999999994443 23453 588898 8889999999999999976665 53211111111
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.|. .+++-||+|+.- .+ ++.-+++-+-|+|.......-+.+.+++
T Consensus 108 ~IpLP~WV~~~g~--~~pDi~ftDr~G----------------------~r-n~EyLSlg~D~~pvl~GRTplq~Y~Dfm 162 (517)
T PLN02801 108 NIPIPQWVRDVGD--SDPDIFYTNRSG----------------------NR-NKEYLSIGVDNLPLFHGRTAVEMYSDYM 162 (517)
T ss_pred cccCCHHHHHhhc--cCCCceeecCCC----------------------Cc-CcceeeeccCcccccCCCCHHHHHHHHH
Confidence 24567654332 123345655321 12 2345678899999874321125577777
Q ss_pred HHHHHHHHh
Q 015179 225 KEMAAHVKS 233 (412)
Q Consensus 225 ~~~~~~Ir~ 233 (412)
+........
T Consensus 163 ~SFr~~F~~ 171 (517)
T PLN02801 163 KSFRENMAD 171 (517)
T ss_pred HHHHHHHHH
Confidence 666666655
No 59
>PLN02905 beta-amylase
Probab=95.53 E-value=0.22 Score=51.23 Aligned_cols=133 Identities=11% Similarity=0.221 Sum_probs=84.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||.+|+.-|=+-++| --+|. .|++|+ |..+.++++++++.||++.+.+ |..=...|...
T Consensus 284 ~~~al~a~L~aLK~aGVdGVmvDVWW----GiVE~~gP~~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 284 DPDGLLKQLRILKSINVDGVKVDCWW----GIVEAHAPQEYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeecCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45788999999999999999994443 23454 578898 8889999999999999977665 53211111110
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.+. .+++-||+|+.- .++. .-++|-+-|+|-..+...-+.|.+|+
T Consensus 357 ~IPLP~WV~e~g~--~nPDifftDrsG----------------------~rn~-EyLSlg~D~~pvl~GRTplq~Y~DFM 411 (702)
T PLN02905 357 CIPLPHWVAEIGR--SNPDIFFTDREG----------------------RRNP-ECLSWGIDKERILRGRTALEVYFDYM 411 (702)
T ss_pred cccCCHHHHHhhh--cCCCceEecCCC----------------------CccC-ceeeeecccccccCCCCHHHHHHHHH
Confidence 24566654332 122345554221 2233 34569999999764322235577777
Q ss_pred HHHHHHHHhc
Q 015179 225 KEMAAHVKSI 234 (412)
Q Consensus 225 ~~~~~~Ir~~ 234 (412)
+.........
T Consensus 412 ~SFr~~F~~f 421 (702)
T PLN02905 412 RSFRVEFDEF 421 (702)
T ss_pred HHHHHHHHHH
Confidence 7666666664
No 60
>PRK14706 glycogen branching enzyme; Provisional
Probab=95.53 E-value=0.5 Score=50.11 Aligned_cols=164 Identities=12% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCCEEEeccccC----CC--Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCCc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSD----GG--YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNFK 140 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~----~~--~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w~ 140 (412)
..++.++.++++|+|+|-+.+..+ +. |.. +.+. ..|. ..+.+.++|+.|+++||.||+|+- ..+.
T Consensus 169 ~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~-~~~g--~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~ 245 (639)
T PRK14706 169 LAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPT-SRLG--TPEDFKYLVNHLHGLGIGVILDWVPGHFPTD 245 (639)
T ss_pred HHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCcc
Confidence 445556889999999999944321 11 111 1111 1122 257899999999999999999973 2111
Q ss_pred -----cCCCchhh--hhhHHhhCCC--CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccC---
Q 015179 141 -----EYGGRPRY--VEWARERGQS--LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNE--- 208 (412)
Q Consensus 141 -----~~gg~~~~--~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NE--- 208 (412)
.+.|.+.| ..+ ..|.. ..+..-=+.++++++.+..-++..++. -.+.|-++-.-.+++..+-.-.
T Consensus 246 ~~~l~~~dg~~~y~~~~~--~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e-~~iDG~R~Dav~~~ly~d~~~~~~~ 322 (639)
T PRK14706 246 ESGLAHFDGGPLYEYADP--RKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQD-FHVDGLRVDAVASMLYLDFSRTEWV 322 (639)
T ss_pred hhhhhccCCCcceeccCC--cCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHH-hCCCeEEEeeehheeecccCccccc
Confidence 01111111 000 00100 000011123688888888888888864 1122321211123332222111
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 209 ARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 209 p~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
|+-...........+++++...||+..|+.+++.
T Consensus 323 ~~~~gg~~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 323 PNIHGGRENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred ccccCCcccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 1111100112346788999999999999865543
No 61
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.16 Score=50.26 Aligned_cols=180 Identities=13% Similarity=0.126 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCCEEEecc--ccCC-CCc----ccccCCCC------CChhHHHHHHHHHHHHHHcCCEEEEecccCC
Q 015179 73 KVTAAFQQATKYGMNIARTWA--FSDG-GYR----ALQVSPGS------YNEDTFKALDFVVAEAREYGVYVILSLVNNF 139 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~--~~~~-~~~----~~~~~~g~------~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w 139 (412)
.-.+.++.+|++-+-.+|... |.++ .|. +.+..|-. +.+..-=-..+++++|+..|..+++.+.-
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~~avN~-- 127 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPYIAVNL-- 127 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceEEEEec--
Confidence 445678999999999999943 2221 121 11122211 12222223578999999999998888742
Q ss_pred ccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC---CCC
Q 015179 140 KEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT---DPS 216 (412)
Q Consensus 140 ~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~---~~~ 216 (412)
..+|-+.-.+|..--..+ ...+ |..+-.. | .++.--+|-.|+|+||-...- ..+
T Consensus 128 -Gsrgvd~ar~~vEY~n~p---ggty-------------wsdlR~~-~-----G~~~P~nvK~w~lGNEm~GpWq~G~~~ 184 (501)
T COG3534 128 -GSRGVDEARNWVEYCNHP---GGTY-------------WSDLRRE-N-----GREEPWNVKYWGLGNEMDGPWQCGHKT 184 (501)
T ss_pred -CCccHHHHHHHHHHccCC---CCCh-------------hHHHHHh-c-----CCCCCcccceEEeccccCCCccccccc
Confidence 112211111222100000 0001 1111110 0 122223889999999985431 124
Q ss_pred hhHHHHHHHHHHHHHHhcCCCC-eEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCC
Q 015179 217 GTLLQEWIKEMAAHVKSIDNHH-LLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPE 288 (412)
Q Consensus 217 ~~~~~~~~~~~~~~Ir~~dp~~-lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~ 288 (412)
...+..++++..++.|=.||+. .+.+|+.+-.++.. |. |... .-......+|++|+|+|-.
T Consensus 185 a~EY~~~A~e~~k~~k~~d~t~e~~v~g~a~~~n~~~-------~~-W~~~---vl~~~~e~vD~ISlH~Y~G 246 (501)
T COG3534 185 APEYGRLANEYRKYMKYFDPTIENVVCGSANGANPTD-------PN-WEAV---VLEEAYERVDYISLHYYKG 246 (501)
T ss_pred CHHHHHHHHHHHHHHhhcCccccceEEeecCCCCCCc-------hH-HHHH---HHHHHhhhcCeEEEEEecC
Confidence 4667778888888888899854 44455433221111 11 2111 1112356689999999943
No 62
>PLN00197 beta-amylase; Provisional
Probab=95.32 E-value=0.32 Score=49.42 Aligned_cols=133 Identities=14% Similarity=0.161 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-CCCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCch
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-SPGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGRP 146 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~~ 146 (412)
+...+++.|+.||.+|+.-|=+-++| --+|. .|++|| |..+.++++++++.||++.+.+ |..=...|...
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWW----GiVE~~~p~~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~ 197 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWW----GLVERESPGVYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSC 197 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeee----eeeccCCCCcCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45689999999999999999994443 23454 588898 8889999999999999977765 53211111111
Q ss_pred --hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 147 --RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 147 --~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
..|.|..+.+. .+++-||+|+.- .+ ++.-+++-+-|+|-..+...-+.|.+|+
T Consensus 198 ~IpLP~WV~~~g~--~dpDifftDr~G----------------------~r-n~EyLSlg~D~~pvl~GRTpiq~Y~DFM 252 (573)
T PLN00197 198 TIPLPKWVVEEVD--KDPDLAYTDQWG----------------------RR-NYEYVSLGCDTLPVLKGRTPVQCYADFM 252 (573)
T ss_pred cccCCHHHHHhhc--cCCCceeecCCC----------------------Cc-ccceeccccccccccCCCCHHHHHHHHH
Confidence 25567654332 123446655321 12 2345578888888764321225577777
Q ss_pred HHHHHHHHhc
Q 015179 225 KEMAAHVKSI 234 (412)
Q Consensus 225 ~~~~~~Ir~~ 234 (412)
+.........
T Consensus 253 ~SFr~~F~~~ 262 (573)
T PLN00197 253 RAFRDNFKHL 262 (573)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 63
>PRK12568 glycogen branching enzyme; Provisional
Probab=95.28 E-value=0.55 Score=50.20 Aligned_cols=164 Identities=12% Similarity=0.130 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccC----CC--Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCC
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSD----GG--YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNF 139 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~----~~--~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w 139 (412)
...++.|+.++++|+|+|-+.+..+ .. |.+ +.+.+ .|. ..+.+.++|+.|+++||.||+|+- ...
T Consensus 270 ~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~-~~G--~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 270 TLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTA-RHG--SPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3455668999999999999954321 11 211 11111 111 257899999999999999999983 111
Q ss_pred c-----cCCCchhhhhhHHhhCCC--CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeee-------
Q 015179 140 K-----EYGGRPRYVEWARERGQS--LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL------- 205 (412)
Q Consensus 140 ~-----~~gg~~~~~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel------- 205 (412)
+ .+.+...|.......|.. .....-=|.++++++.+.+-++..++. -...|-++-.-..++..+.
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~e-yhIDG~R~DAva~mly~d~~r~~g~w 425 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEH-YHLDGLRVDAVASMLYRDYGRAEGEW 425 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHH-hCceEEEEcCHhHhhhhccccccccc
Confidence 0 111111111000000100 000011244688888888888888875 1122211111122322221
Q ss_pred -ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 206 -MNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 206 -~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
-|+-... .......+++++...|++..|+.+++.
T Consensus 426 ~pn~~gg~---en~ea~~Fl~~ln~~v~~~~P~~~~IA 460 (730)
T PRK12568 426 VPNAHGGR---ENLEAVAFLRQLNREIASQFPGVLTIA 460 (730)
T ss_pred cccccCCc---cChHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 1221110 112346789999999999999876653
No 64
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=95.00 E-value=1.6 Score=42.37 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCc-------ccc--------------------cCCCCCChhHHHHHHHHHHH
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQ--------------------VSPGSYNEDTFKALDFVVAE 123 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~--------------------~~~g~~~~~~l~~ld~~i~~ 123 (412)
.+.+.+.|+.|+..++|.+-++ +.| +|+ .+. ...+.|. -+.+..+++.
T Consensus 16 ~~~ik~~id~ma~~K~N~lhlH-ltD-~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~y 90 (326)
T cd06564 16 MDFLKDIIKTMSWYKMNDLQLH-LND-NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAY 90 (326)
T ss_pred HHHHHHHHHHHHHcCCceEEEe-ecC-CcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHH
Confidence 5789999999999999999884 443 221 110 0123344 4678899999
Q ss_pred HHHcCCEEEEecccCCccCCCchhhhhhHHhhCCC-----CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccC-C
Q 015179 124 AREYGVYVILSLVNNFKEYGGRPRYVEWARERGQS-----LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKD-D 197 (412)
Q Consensus 124 a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~-~ 197 (412)
|+++||.||.++.. +|-.........+-+.. .....-...+|++.+..++.+..+++- |.. .
T Consensus 91 A~~rgI~vIPEID~----PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~E~~~~--------f~~~~ 158 (326)
T cd06564 91 AKDRGVNIIPEIDS----PGHSLAFTKAMPELGLKNPFSKYDKDTLDISNPEAVKFVKALFDEYLDG--------FNPKS 158 (326)
T ss_pred HHHcCCeEeccCCC----cHHHHHHHHhhHHhcCCCcccCCCcccccCCCHHHHHHHHHHHHHHHHh--------cCCCC
Confidence 99999999999852 33222111111111110 011112335688888888888888886 552 2
Q ss_pred CceEEeeec-cCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 015179 198 PTIFAWELM-NEARCPTDPSGTLLQEWIKEMAAHVKSIDN 236 (412)
Q Consensus 198 p~v~~wel~-NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp 236 (412)
+ .+.++ -|..... ...+.+..+++++.+.+++.+.
T Consensus 159 ~---~~HiGgDE~~~~~-~~~~~~~~f~~~~~~~v~~~gk 194 (326)
T cd06564 159 D---TVHIGADEYAGDA-GYAEAFRAYVNDLAKYVKDKGK 194 (326)
T ss_pred C---EEEeccccccccC-ccHHHHHHHHHHHHHHHHHcCC
Confidence 2 13332 2222211 1346688899999999999853
No 65
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=94.84 E-value=1.1 Score=43.02 Aligned_cols=148 Identities=15% Similarity=0.091 Sum_probs=86.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCC-C---CcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDG-G---YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGR 145 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~-~---~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~ 145 (412)
..+.+.+.|+.|+..|+|.+-++. .|. . ++.+....|.|. -+.+.++++.|+++||.||..+.. +|-.
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl-~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~----pGH~ 86 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYY-EDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQT----LGHL 86 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEE-ecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCC----HHHH
Confidence 357899999999999999999943 221 1 122222245566 456788999999999999999853 2221
Q ss_pred hhhhhhHHhhC---CCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeee-ccCCCCC---------
Q 015179 146 PRYVEWARERG---QSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL-MNEARCP--------- 212 (412)
Q Consensus 146 ~~~~~w~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel-~NEp~~~--------- 212 (412)
.....|..-.. .+.....-...+|+..+..++.++.+++- |.. +. +.+ +-|....
T Consensus 87 ~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~--------f~s-~~---~HIG~DE~~~~g~~~~~~~~ 154 (301)
T cd06565 87 EFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLEL--------HPS-KY---IHIGMDEAYDLGRGRSLRKH 154 (301)
T ss_pred HHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHh--------CCC-Ce---EEECCCcccccCCCHHHHHh
Confidence 11111100000 00001112234688888888888888875 441 11 112 1121110
Q ss_pred -CCCChhHHHHHHHHHHHHHHhcCCC
Q 015179 213 -TDPSGTLLQEWIKEMAAHVKSIDNH 237 (412)
Q Consensus 213 -~~~~~~~~~~~~~~~~~~Ir~~dp~ 237 (412)
.....+.+..+++++.+.+++..++
T Consensus 155 ~~~~~~~l~~~~~~~v~~~v~~~g~~ 180 (301)
T cd06565 155 GNLGRGELYLEHLKKVLKIIKKRGPK 180 (301)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHcCCE
Confidence 0012356788999999999999874
No 66
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=94.83 E-value=1.2 Score=42.79 Aligned_cols=146 Identities=16% Similarity=0.200 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCC-------cccc---------cCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGY-------RALQ---------VSPGSYNEDTFKALDFVVAEAREYGVYVIL 133 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~-------~~~~---------~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil 133 (412)
..+.+.+.|+.|+..++|.+.++.-.+.+| +.+. ...+.|. -+.+.++++.|+++||.||.
T Consensus 14 ~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT---~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 14 SVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYT---YAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeEC---HHHHHHHHHHHHHcCCEEEE
Confidence 357899999999999999999965443333 2221 1123455 36788999999999999999
Q ss_pred ecccCCccCCCchhhhhhHHhh------CCCCC--CcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeee
Q 015179 134 SLVNNFKEYGGRPRYVEWARER------GQSLK--NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL 205 (412)
Q Consensus 134 ~l~~~w~~~gg~~~~~~w~~~~------g~~~~--~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel 205 (412)
++.. +|-......+..+- +.... ...-...+|+..+..++.++.+++- |.. + . +.|
T Consensus 91 EiD~----PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~l--------f~~-~-~--iHi 154 (303)
T cd02742 91 EIDM----PGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAEL--------FPD-R-Y--LHI 154 (303)
T ss_pred eccc----hHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHh--------CCC-C-e--EEe
Confidence 9952 22221111111000 00000 1112234678888888888888886 532 2 1 233
Q ss_pred -ccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 015179 206 -MNEARCPTDPSGTLLQEWIKEMAAHVKSID 235 (412)
Q Consensus 206 -~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~d 235 (412)
+-|.....+ ..+.+..+++++.+.+++.+
T Consensus 155 GgDE~~~~~~-~~~l~~~f~~~~~~~v~~~g 184 (303)
T cd02742 155 GGDEAHFKQD-RKHLMSQFIQRVLDIVKKKG 184 (303)
T ss_pred cceecCCCCC-HHHHHHHHHHHHHHHHHHcC
Confidence 233322111 23457888899999999876
No 67
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=94.68 E-value=1.5 Score=47.20 Aligned_cols=162 Identities=15% Similarity=0.216 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccccC----CC--Ccc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc-c--CCc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSD----GG--YRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV-N--NFK 140 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~----~~--~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~-~--~w~ 140 (412)
.+++.|+.++++|+|+|-+.+..+ .+ |.. +.+.+ .|. ..+.+.++|+.|+++||.||+|+- + .-.
T Consensus 252 ~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~-~~G--tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~ 328 (758)
T PLN02447 252 FADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSS-RSG--TPEDLKYLIDKAHSLGLRVLMDVVHSHASKN 328 (758)
T ss_pred HHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccc-ccC--CHHHHHHHHHHHHHCCCEEEEEecccccccc
Confidence 357789999999999999954321 11 111 11111 111 246788999999999999999973 1 100
Q ss_pred ------cCCCchhhhhhHHh--hCCC-CCCc-CccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEee------
Q 015179 141 ------EYGGRPRYVEWARE--RGQS-LKNE-DDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWE------ 204 (412)
Q Consensus 141 ------~~gg~~~~~~w~~~--~g~~-~~~~-~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~we------ 204 (412)
.+.+.+ ..|... .|.. .... .-=|.++++++.+...++..++. -.+.|-++-.-.+++..+
T Consensus 329 ~~~gl~~fDg~~--~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~e-y~IDGfRfDaV~smlY~~hg~~~~ 405 (758)
T PLN02447 329 TLDGLNGFDGTD--GSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEE-YKFDGFRFDGVTSMLYHHHGLQMA 405 (758)
T ss_pred ccccccccCCCC--ccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHH-hCcccccccchhhhhccccCcccc
Confidence 010100 001000 0000 0000 11134678888888888888874 113332222222333211
Q ss_pred e---ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 205 L---MNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 205 l---~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
. .||-.... .......+++.+...|++..|+.+.+.
T Consensus 406 f~~~~~~~~g~~--~d~~a~~fL~~~N~~i~~~~p~~~~IA 444 (758)
T PLN02447 406 FTGNYNEYFGMA--TDVDAVVYLMLANDLLHGLYPEAVTIA 444 (758)
T ss_pred cccCcccccCCc--cChHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 1 12211110 112356788999999999999876553
No 68
>KOG2566 consensus Beta-glucocerebrosidase [Carbohydrate transport and metabolism]
Probab=94.57 E-value=1.9 Score=41.93 Aligned_cols=174 Identities=18% Similarity=0.212 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccccCCCceEEeee--ccCCCCCCCC---------ChhHHHHHHHHH-HHHHHhcCC-
Q 015179 170 VVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL--MNEARCPTDP---------SGTLLQEWIKEM-AAHVKSIDN- 236 (412)
Q Consensus 170 ~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel--~NEp~~~~~~---------~~~~~~~~~~~~-~~~Ir~~dp- 236 (412)
...+.+.+|.-++.+. |..| .|..|.| .|||....+. +++.-+++++.. ..++++-..
T Consensus 226 ~yhqtya~YfvkFlea--------Y~~~-gi~FWglt~qNEPstG~d~~~k~Qtl~ftae~qRdFik~dLGPaLa~s~~~ 296 (518)
T KOG2566|consen 226 IYHQTYARYFVKFLEA--------YAKH-GIQFWGLTTQNEPSTGSDKKWKWQTLGFTAETQRDFIKKDLGPALASSKTT 296 (518)
T ss_pred hhHHHHHHHHHHHHHH--------HHhc-CceEEeecccCCCCcCcccCCceeecccCHHHHHHHHHHhcchhhhcCCcC
Confidence 4455566666666666 7777 4666765 8999876542 234456666543 345555322
Q ss_pred -CCeEEeccccccCCCCCccccCCCCCCCCCCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 015179 237 -HHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQD 315 (412)
Q Consensus 237 -~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 315 (412)
+.-|++-.++ . +.-|. |. ..-+-...+.++++-+.+|.|.....+ . .. +.+-.
T Consensus 297 knvkllilDD~---R------g~LP~-Wa-dtvlnDpeAakYv~GIaVHwY~df~~p--a----~~-------L~eTh-- 350 (518)
T KOG2566|consen 297 KNVKLLILDDQ---R------GLLPH-WA-DTVLNDPEAAKYVHGIAVHWYQDFLEP--A----KH-------LDETH-- 350 (518)
T ss_pred CceEEEEecCC---c------cCCCc-cc-hhhccChhhhhhccceEEEeeccccCh--h----hh-------hhhHH--
Confidence 2222221111 0 11122 31 000111224567889999999863222 0 00 11110
Q ss_pred hhhcCCCcEEEEecCCCCCC---CCC-ChHHHHHHHHHHHHHHHHhhhcCCCccccccccccc--cCccccCCCcE
Q 015179 316 SDSILKKPILIGEFGKSYKY---PGY-SEQKRNSYFQKVYDAIYDCAKSKGPCGGGLFWQLMT--QGMTNFGDGYE 385 (412)
Q Consensus 316 ~~~~~gkPv~igE~G~~~~~---~g~-~~~~r~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~~--~g~~~~~~gy~ 385 (412)
++-.++=++-+|-...... ..+ +=+...+|-.++++.+-. ...||.=|++.- .|.|+|-.+|-
T Consensus 351 -~~hP~~fifgTEAc~Gy~~~d~v~~Gswdrae~yasdii~dlnn------~vtGWtdwNl~Ld~~GGP~wv~nfv 419 (518)
T KOG2566|consen 351 -RKHPNTFIFGTEACAGYKSKDGVDLGSWDRAEQYASDIITDLNN------HVTGWTDWNLILDAQGGPNWVSNFV 419 (518)
T ss_pred -hhCCCeEEEeehhccccccccCccccchhhHHHHHHHHHHhhhh------hccceeeeeeEecCcCCchhHhccC
Confidence 1114555666665433331 111 112223344444443322 368999999874 58899966553
No 69
>PLN02960 alpha-amylase
Probab=94.55 E-value=2.1 Score=46.45 Aligned_cols=165 Identities=14% Similarity=0.172 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccccC----C--CCcc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc---cCCc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSD----G--GYRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV---NNFK 140 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~----~--~~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~---~~w~ 140 (412)
..++.|+.++++|+|+|-+.+..+ . +|.. +.+. ..|. ..+.+.++|+.|+++||.||+|+- ...+
T Consensus 418 ~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~-~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~d 494 (897)
T PLN02960 418 FTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVS-SRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAAD 494 (897)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcc-cccC--CHHHHHHHHHHHHHCCCEEEEEecccccCCc
Confidence 345679999999999999954321 1 1211 1111 1222 257889999999999999999972 2111
Q ss_pred ------cCCCch-hhhhhHHhhCCC-CCCcCc-cCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeee--ccCC
Q 015179 141 ------EYGGRP-RYVEWARERGQS-LKNEDD-FYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL--MNEA 209 (412)
Q Consensus 141 ------~~gg~~-~~~~w~~~~g~~-~~~~~~-~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel--~NEp 209 (412)
.+.|.+ .|-.- ...+.. ...... =|.++++++.+..-++..++. -.+.|-++-.-.+++..+- .+++
T Consensus 495 ~~~~L~~FDG~~~~Yf~~-~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~E-yhIDGfR~DAV~sMlY~d~g~~~~~ 572 (897)
T PLN02960 495 EMVGLSLFDGSNDCYFHS-GKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTE-YRVDGFQFHSLGSMLYTHNGFASFT 572 (897)
T ss_pred cccchhhcCCCccceeec-CCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHH-HCCCceeecccceeeeeccCccccC
Confidence 011111 00000 000100 000111 134688888888888888865 1233322222234433221 1111
Q ss_pred CC---C-CCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 210 RC---P-TDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 210 ~~---~-~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
.. . ..........+++.+...|++..|+.+++.
T Consensus 573 G~~~~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 573 GDLDEYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred CcccccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 10 0 000112356789999999999888876654
No 70
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=94.52 E-value=0.058 Score=51.28 Aligned_cols=65 Identities=18% Similarity=0.254 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCC--CCcccccCCC-CCCh--hHHHHHHHHHHHHHHcCCEEEEec
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDG--GYRALQVSPG-SYNE--DTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~--~~~~~~~~~g-~~~~--~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
..-+.+.|+.|+++|+|+|-+-++.+. .+..+.+..- ..++ ...+.+.++|+.|+++||+||+|+
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 345667799999999999999543211 1111111000 0111 247899999999999999999998
No 71
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.87 E-value=0.27 Score=41.00 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCCh-hHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHH
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNE-DTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWAR 153 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~-~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~ 153 (412)
++.++.+++.|+|+|-++.-+-+.|..+...-+.-.+ -..+-|-++|+.|+++||+|++.+.-.|+..- ...-|.|..
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~-~~~HPeW~~ 81 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDA-AERHPEWFV 81 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHH-HHhCCceee
Confidence 5678999999999999954221212111111111011 01356789999999999999999854333211 112345542
Q ss_pred h--hCCCC-----CC---cCccCCCHHHHHHHHHHHHHHHhc
Q 015179 154 E--RGQSL-----KN---EDDFYTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 154 ~--~g~~~-----~~---~~~~~~~~~~~~~~~~~~~~~v~r 185 (412)
. .|.+. .. ...++ |...++...+.++.+++|
T Consensus 82 ~~~~G~~~~~~~~~~~~~~~~c~-ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 82 RDADGRPMRGERFGYPGWYTCCL-NSPYREFLLEQIREILDR 122 (132)
T ss_pred ECCCCCCcCCCCcCCCCceecCC-CccHHHHHHHHHHHHHHc
Confidence 1 23211 11 11222 345678888999999998
No 72
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.78 E-value=1.4 Score=46.68 Aligned_cols=144 Identities=22% Similarity=0.351 Sum_probs=78.0
Q ss_pred HHHHHHHHcCCCEEEeccccC-C-------------CCccc---ccCCCCC--Ch----hHHHHHHHHHHHHHHcCCEEE
Q 015179 76 AAFQQATKYGMNIARTWAFSD-G-------------GYRAL---QVSPGSY--NE----DTFKALDFVVAEAREYGVYVI 132 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~-~-------------~~~~~---~~~~g~~--~~----~~l~~ld~~i~~a~~~Gi~vi 132 (412)
+.|+.|+++|+|+|-+-+..+ . +|.+. .+.+ .| ++ ...+.+.++|+.|+++||+||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~-~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEG-SYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcCh-hhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 459999999999999944221 0 11110 1100 01 11 125789999999999999999
Q ss_pred EecccCCccCCCchhh----hhhH---HhhCCCCCCc----Ccc-CCCHHHHHHHHHHHHHHHhcccccccccccCCCce
Q 015179 133 LSLVNNFKEYGGRPRY----VEWA---RERGQSLKNE----DDF-YTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTI 200 (412)
Q Consensus 133 l~l~~~w~~~gg~~~~----~~w~---~~~g~~~~~~----~~~-~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v 200 (412)
+|+--.....+....+ +.|. ...|. .... ..+ ..++++++.+.+.++..++. |+=+-
T Consensus 247 lDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e--------~~iDG-- 315 (605)
T TIGR02104 247 MDVVYNHTYSREESPFEKTVPGYYYRYNEDGT-LSNGTGVGNDTASEREMMRKFIVDSVLYWVKE--------YNIDG-- 315 (605)
T ss_pred EEEEcCCccCCCCCcccCCCCCeeEEECCCCC-ccCCCcccCCcccCCHHHHHHHHHHHHHHHHH--------cCCCE--
Confidence 9973110000000000 0110 00010 0000 011 23688888888888888875 54432
Q ss_pred EEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 201 FAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 201 ~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
+-+++..... ..+++++..++|+..|+..++
T Consensus 316 fR~D~~~~~~----------~~~~~~~~~~~~~~~p~~~li 346 (605)
T TIGR02104 316 FRFDLMGIHD----------IETMNEIRKALNKIDPNILLY 346 (605)
T ss_pred EEEechhcCC----------HHHHHHHHHHHHhhCCCeEEE
Confidence 1134443221 336678888889999876664
No 73
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=93.44 E-value=5.2 Score=38.86 Aligned_cols=144 Identities=17% Similarity=0.183 Sum_probs=87.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCc-------cccc----------CCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQV----------SPGSYNEDTFKALDFVVAEAREYGVYVI 132 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~~----------~~g~~~~~~l~~ld~~i~~a~~~Gi~vi 132 (412)
..+.+.+.|+.|+..++|.+-+|.-.+.+|+ .+.. ..|.|. -+.+.++++.|+++||.||
T Consensus 16 ~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT---~~di~elv~yA~~rgI~vI 92 (329)
T cd06568 16 TVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYT---QEDYKDIVAYAAERHITVV 92 (329)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCC---HHHHHHHHHHHHHcCCEEE
Confidence 3578999999999999999999654444342 2211 113354 4678899999999999999
Q ss_pred EecccCCccCCCch----hhhhhHHhhCCC--------CCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCce
Q 015179 133 LSLVNNFKEYGGRP----RYVEWARERGQS--------LKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTI 200 (412)
Q Consensus 133 l~l~~~w~~~gg~~----~~~~w~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v 200 (412)
.++.. +|-.. .|+.-.. .+.. .....-..++|+..+..++.++.+++- |.. +
T Consensus 93 PEiD~----PGH~~a~~~~~p~l~~-~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~--------f~~-~-- 156 (329)
T cd06568 93 PEIDM----PGHTNAALAAYPELNC-DGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAAL--------TPG-P-- 156 (329)
T ss_pred EecCC----cHHHHHHHHhChhhcc-CCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHh--------CCC-C--
Confidence 99952 22211 1111110 1100 000111234688888788888888775 432 2
Q ss_pred EEeee-ccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 015179 201 FAWEL-MNEARCPTDPSGTLLQEWIKEMAAHVKSIDN 236 (412)
Q Consensus 201 ~~wel-~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp 236 (412)
.+.| +-|.... ..+.+..+++++.+.+++.+.
T Consensus 157 -~iHiGgDE~~~~---~~~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 157 -YIHIGGDEAHST---PHDDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred -eEEEecccCCCC---chHHHHHHHHHHHHHHHHCCC
Confidence 2344 3343321 235678899999999998763
No 74
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=92.99 E-value=0.61 Score=42.67 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCEEEEeccc-CCccCCC-----chhhhh--hHH---------hhCC--CCCCcCccCCCHH---H
Q 015179 114 FKALDFVVAEAREYGVYVILSLVN-NFKEYGG-----RPRYVE--WAR---------ERGQ--SLKNEDDFYTNAV---V 171 (412)
Q Consensus 114 l~~ld~~i~~a~~~Gi~vil~l~~-~w~~~gg-----~~~~~~--w~~---------~~g~--~~~~~~~~~~~~~---~ 171 (412)
....+.+++...+.|.+.|++|.- .|..-.+ ...|+. |.. +.|. .......+-.+|. -
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 456789999999999999999851 1111000 001111 111 0010 0001111111333 0
Q ss_pred HHHHHHHHHHHHhcccccccccccC---CCceEEeeeccCCCCCC------CC---ChhHHHHHHHHHHHHHHhcCCCCe
Q 015179 172 KQYYKNHVKAVLTRINSITGVAYKD---DPTIFAWELMNEARCPT------DP---SGTLLQEWIKEMAAHVKSIDNHHL 239 (412)
Q Consensus 172 ~~~~~~~~~~~v~r~n~~~g~~y~~---~p~v~~wel~NEp~~~~------~~---~~~~~~~~~~~~~~~Ir~~dp~~l 239 (412)
.....+++..|+++ |+. .-.|-+|.|-|||..-. .| +.+.+..-.-+++++||++||+..
T Consensus 103 ~~y~~ewV~~l~~~--------~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~ 174 (239)
T PF12891_consen 103 PVYMDEWVNYLVNK--------YGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAK 174 (239)
T ss_dssp EEEHHHHHHHHHHH--------H--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSE
T ss_pred HhHHHHHHHHHHHH--------HhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCe
Confidence 11234556666666 544 34688999999998521 12 234555566788899999999998
Q ss_pred EEeccc
Q 015179 240 LEVGLE 245 (412)
Q Consensus 240 V~~g~~ 245 (412)
|+ |..
T Consensus 175 v~-GP~ 179 (239)
T PF12891_consen 175 VF-GPV 179 (239)
T ss_dssp EE-EEE
T ss_pred Ee-ech
Confidence 86 544
No 75
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=92.40 E-value=3.6 Score=40.29 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCCEEEecc-ccCCCCcccccCCCCCC----hhHHHHHHHHHHHHHHcCCEEEEeccc-CCccCCCc
Q 015179 72 AKVTAAFQQATKYGMNIARTWA-FSDGGYRALQVSPGSYN----EDTFKALDFVVAEAREYGVYVILSLVN-NFKEYGGR 145 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~-~~~~~~~~~~~~~g~~~----~~~l~~ld~~i~~a~~~Gi~vil~l~~-~w~~~gg~ 145 (412)
-+.++.++.++++|+..+=+-. ++|| +-.+...-..|+ +..-+-+.++.+.|+++||++.+-++. .|......
T Consensus 91 fD~dqW~~~ak~aGakY~VlTakHHDG-F~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~ 169 (346)
T PF01120_consen 91 FDADQWAKLAKDAGAKYVVLTAKHHDG-FCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYP 169 (346)
T ss_dssp --HHHHHHHHHHTT-SEEEEEEE-TT---BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTT
T ss_pred CCHHHHHHHHHHcCCCEEEeehhhcCc-cccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccC
Confidence 4678899999999999887711 2332 111111111121 123467889999999999999998863 22111000
Q ss_pred hhhhhhHHhhCCCCCCcCccCCCHHH-HHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHH
Q 015179 146 PRYVEWARERGQSLKNEDDFYTNAVV-KQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 146 ~~~~~w~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~ 224 (412)
. .......+ . ...--..++. .+.+...++.+++| | +|.++=++....... +.+ -.
T Consensus 170 ~--~~~~~~~~-~---~~~~~~~~~~~~~~~~~ql~EL~~~--------Y--~~d~lWfDg~~~~~~------~~~--~~ 225 (346)
T PF01120_consen 170 P--DEEGDENG-P---ADGPGNWQRYYNEYWLAQLRELLTR--------Y--KPDILWFDGGWPDPD------EDW--DS 225 (346)
T ss_dssp S--SCHCHHCC------HCCHHHHHHHHHHHHHHHHHHHHC--------S--TESEEEEESTTSCCC------THH--HH
T ss_pred C--CccCCccc-c---cccchhhHhHhhhhhHHHHHHHHhC--------C--CcceEEecCCCCccc------ccc--CH
Confidence 0 00000000 0 0000000222 33677889999999 9 777877777765411 112 13
Q ss_pred HHHHHHHHhcCCCCeEE
Q 015179 225 KEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 225 ~~~~~~Ir~~dp~~lV~ 241 (412)
.++++.||+..|+.+|.
T Consensus 226 ~~~~~~i~~~qp~~ii~ 242 (346)
T PF01120_consen 226 AELYNWIRKLQPDVIIN 242 (346)
T ss_dssp HHHHHHHHHHSTTSEEE
T ss_pred HHHHHHHHHhCCeEEEe
Confidence 88899999999988876
No 76
>PLN02361 alpha-amylase
Probab=92.39 E-value=0.8 Score=45.67 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=55.5
Q ss_pred ECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccC-CCCcccccCC-CCCCh--hHHHHHHHHH
Q 015179 46 VNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSD-GGYRALQVSP-GSYNE--DTFKALDFVV 121 (412)
Q Consensus 46 ~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~-~~~~~~~~~~-g~~~~--~~l~~ld~~i 121 (412)
.+|.++.+-|+|+.-. +...-..+.+.++.|+++|++.|=+.+..+ .++..+.+.. ...++ ...+.+..+|
T Consensus 8 ~~~~~v~lQ~F~W~~~-----~~~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li 82 (401)
T PLN02361 8 RNGREILLQAFNWESH-----KHDWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLL 82 (401)
T ss_pred cCCCcEEEEEEeccCC-----ccHHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHH
Confidence 4678899999987421 111345788889999999999999854321 1111111100 00111 1256899999
Q ss_pred HHHHHcCCEEEEec
Q 015179 122 AEAREYGVYVILSL 135 (412)
Q Consensus 122 ~~a~~~Gi~vil~l 135 (412)
+.|+++||+||+|+
T Consensus 83 ~~~h~~gi~vi~D~ 96 (401)
T PLN02361 83 RKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHcCCEEEEEE
Confidence 99999999999998
No 77
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=92.25 E-value=2.5 Score=44.37 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC----CCC--ccc---ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc-cCC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD----GGY--RAL---QVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV-NNF 139 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~----~~~--~~~---~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~-~~w 139 (412)
..+..++.|..++++|+|+|-+.+..+ ++| ... .+.. .|. .-+.+.++||.|+++||-||||.- +..
T Consensus 163 ~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~s-ryG--tPedfk~fVD~aH~~GIgViLD~V~~HF 239 (628)
T COG0296 163 YFELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPTS-RYG--TPEDFKALVDAAHQAGIGVILDWVPNHF 239 (628)
T ss_pred HHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceeccccc-cCC--CHHHHHHHHHHHHHcCCEEEEEecCCcC
Confidence 457788999999999999999955432 222 111 1111 121 135678899999999999999973 110
Q ss_pred c-------cCCCchhhhhhHHhhCC--CCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEe-------
Q 015179 140 K-------EYGGRPRYVEWARERGQ--SLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAW------- 203 (412)
Q Consensus 140 ~-------~~gg~~~~~~w~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~w------- 203 (412)
. .+++...|..-....|. +......++..++++..+..-....++. ..+.|.++-.-++++..
T Consensus 240 ~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~-yHiDGlRvDAV~smly~d~~~~~~ 318 (628)
T COG0296 240 PPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEE-YHIDGLRVDAVASMLYLDYSRAEG 318 (628)
T ss_pred CCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHH-hCCcceeeehhhhhhccchhhhhh
Confidence 0 12222211110000110 1111223343577777777777777765 22333222222333322
Q ss_pred -eeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCC
Q 015179 204 -ELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHH 238 (412)
Q Consensus 204 -el~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~ 238 (412)
.+-||.... +--...++++.+...|+..-|..
T Consensus 319 ~~~~n~~ggr---~n~~a~efl~~~n~~i~~~~pg~ 351 (628)
T COG0296 319 EWVPNEYGGR---ENLEAAEFLRNLNSLIHEEEPGA 351 (628)
T ss_pred cccccccCCc---ccHHHHHHhhhhhhhhcccCCCc
Confidence 233443321 12346778889999998876655
No 78
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=92.17 E-value=6.1 Score=38.88 Aligned_cols=63 Identities=25% Similarity=0.292 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCc-------cccc---------------------CCCCCChhHHHHHHHHHH
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQV---------------------SPGSYNEDTFKALDFVVA 122 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~~---------------------~~g~~~~~~l~~ld~~i~ 122 (412)
.+.+.+.|+.|+..++|.+-+|.-.+.+|+ .+.. ..|.|. -+.+..+++
T Consensus 17 ~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~ 93 (357)
T cd06563 17 VDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREIVA 93 (357)
T ss_pred HHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHHHH
Confidence 578999999999999999999655443332 2110 013344 467889999
Q ss_pred HHHHcCCEEEEecc
Q 015179 123 EAREYGVYVILSLV 136 (412)
Q Consensus 123 ~a~~~Gi~vil~l~ 136 (412)
.|+++||.||..+.
T Consensus 94 yA~~rgI~VIPEID 107 (357)
T cd06563 94 YAAERGITVIPEID 107 (357)
T ss_pred HHHHcCCEEEEecC
Confidence 99999999999985
No 79
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=91.76 E-value=0.55 Score=48.93 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEeccc-cCCCC-cccccCC-CCCCh--hHHHHHHHHHHHHHHcCCEEEEec
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAF-SDGGY-RALQVSP-GSYNE--DTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~-~~~~~-~~~~~~~-g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
++..-+.+.|+.|+++|+|+|=+-++ ..... ..+.... -..++ ...+.+.++++.|+++||+||+|+
T Consensus 25 Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 25 GDFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred cCHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 45677888899999999999988443 21100 0000000 01122 135789999999999999999998
No 80
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=91.47 E-value=4.8 Score=38.79 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCc-------ccc-cC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQ-VS--PGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~-~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.+.+.|+.|+..++|++-+|.-.+.+|+ .+. .. .+.|. -+.+..+++.|+++||.||.++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEId 89 (311)
T cd06570 17 VAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEID 89 (311)
T ss_pred HHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEeec
Confidence 578999999999999999999655444442 221 11 13455 45778899999999999999996
No 81
>PLN00196 alpha-amylase; Provisional
Probab=91.29 E-value=1.2 Score=44.78 Aligned_cols=80 Identities=15% Similarity=0.147 Sum_probs=49.5
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEecc-ccCC---CCcc---cccCCCCCChhHHHHHHHHHHH
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWA-FSDG---GYRA---LQVSPGSYNEDTFKALDFVVAE 123 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~-~~~~---~~~~---~~~~~g~~~~~~l~~ld~~i~~ 123 (412)
+.+-|+++.-... +..+...+.+.++.|+++|++.|=+.+ +... +|.+ +...+..|. ..+.+.++++.
T Consensus 26 v~~Q~F~W~~~~~---~gg~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fG--t~~elk~Lv~~ 100 (428)
T PLN00196 26 VLFQGFNWESWKQ---NGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYG--NEAQLKSLIEA 100 (428)
T ss_pred EEEEeeccCCCCC---CCcCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCC--CHHHHHHHHHH
Confidence 3456776532111 112345678889999999999998844 2211 1211 111111222 24678999999
Q ss_pred HHHcCCEEEEec
Q 015179 124 AREYGVYVILSL 135 (412)
Q Consensus 124 a~~~Gi~vil~l 135 (412)
|+++||+||+|+
T Consensus 101 aH~~GIkVilDv 112 (428)
T PLN00196 101 FHGKGVQVIADI 112 (428)
T ss_pred HHHCCCEEEEEE
Confidence 999999999997
No 82
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=91.22 E-value=0.77 Score=47.95 Aligned_cols=63 Identities=27% Similarity=0.455 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC-----CCCccc---ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD-----GGYRAL---QVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~-----~~~~~~---~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+..-+.+.|+.|+++|+++|=+-++.. .+|... ...+ .| ...+.++++++.|+++||+||+|+
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~-~~--Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDP-TY--GTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCc-cc--CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 556677889999999999998844321 112110 1111 11 135789999999999999999998
No 83
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=91.12 E-value=1.2 Score=45.67 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCCCEEEecc-ccCC---CCcccccCC----------CCCChh--HHHHHHHHHHHHHHcCCEEEEec
Q 015179 72 AKVTAAFQQATKYGMNIARTWA-FSDG---GYRALQVSP----------GSYNED--TFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~-~~~~---~~~~~~~~~----------g~~~~~--~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
..+.+-|+.|+++|+|+|=+-+ +... .+..+.+.. |..++. ..+.+.++|+.|+++||+||+|+
T Consensus 22 ~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 22 NRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567779999999999998843 3211 011111111 112222 36789999999999999999998
No 84
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.12 E-value=6.8 Score=44.19 Aligned_cols=150 Identities=17% Similarity=0.310 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEecc-cc----C-------------------CCCcc---cccCCCCCC--h----hHHHHH
Q 015179 71 KAKVTAAFQQATKYGMNIARTWA-FS----D-------------------GGYRA---LQVSPGSYN--E----DTFKAL 117 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~-~~----~-------------------~~~~~---~~~~~g~~~--~----~~l~~l 117 (412)
...+.+.|+.|+++|+|+|-+.+ |. + -+|.+ +.+. +.|. + ...+.+
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape-~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALS-GMYSEDPKDPELRIAEF 557 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccc-cccccCCcCccccHHHH
Confidence 34455669999999999999944 31 0 00111 0111 1121 1 125789
Q ss_pred HHHHHHHHHcCCEEEEecc---cCCc-cCCC-chhhhhhHHhhCCCCC--CcCcc-CCCHHHHHHHHHHHHHHHhccccc
Q 015179 118 DFVVAEAREYGVYVILSLV---NNFK-EYGG-RPRYVEWARERGQSLK--NEDDF-YTNAVVKQYYKNHVKAVLTRINSI 189 (412)
Q Consensus 118 d~~i~~a~~~Gi~vil~l~---~~w~-~~gg-~~~~~~w~~~~g~~~~--~~~~~-~~~~~~~~~~~~~~~~~v~r~n~~ 189 (412)
.++|+.|+++||+||+|+- .... .+.+ .+.|-.+....|.... ....+ ..++.+++.+.+.++..++.
T Consensus 558 K~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e---- 633 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE---- 633 (1111)
T ss_pred HHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh----
Confidence 9999999999999999973 2100 0111 0111001000111000 00011 23577888888888888876
Q ss_pred ccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 190 TGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 190 ~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
|+=+- +-++++... . ..+++++..++++++|+.+++
T Consensus 634 ----y~VDG--FRfDl~g~~------d----~~~~~~~~~~l~~~dP~~~li 669 (1111)
T TIGR02102 634 ----FKVDG--FRFDMMGDH------D----AASIEIAYKEAKAINPNIIMI 669 (1111)
T ss_pred ----cCCcE--EEEeccccC------C----HHHHHHHHHHHHHhCcCEEEE
Confidence 65442 225665421 1 234566777788889976554
No 85
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=91.06 E-value=0.78 Score=47.83 Aligned_cols=66 Identities=17% Similarity=0.231 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccc-cCCCC-cccccCC-CCCCh--hHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAF-SDGGY-RALQVSP-GSYNE--DTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~-~~~~~-~~~~~~~-g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+...+.+.|+.++++|+|+|=+-++ ..... ..+.... ..+++ ...+.+.++++.|+++||+||+|+
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4567778899999999999988443 21100 0010000 00111 236789999999999999999997
No 86
>PLN02877 alpha-amylase/limit dextrinase
Probab=90.55 E-value=8.2 Score=42.73 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHcCCEEEEec
Q 015179 113 TFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 113 ~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
....+.++|+.|+++||.||+|+
T Consensus 464 RI~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 464 RIIEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred hHHHHHHHHHHHHHCCCEEEEEE
Confidence 46679999999999999999997
No 87
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=90.51 E-value=12 Score=34.67 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccc
Q 015179 115 KALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAY 194 (412)
Q Consensus 115 ~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y 194 (412)
.+++.+++.|+++|++|++.+.. |. .+. + .....+++.++.|.+-+..++++ |
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg-~~-~~~---~--------------~~~~~~~~~r~~fi~~lv~~~~~--------~ 98 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAG-GS-PPE---F--------------TAALNDPAKRKALVDKIINYVVS--------Y 98 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcC-CC-CCc---c--------------hhhhcCHHHHHHHHHHHHHHHHH--------h
Confidence 46778899999999999998853 11 000 0 11234688888887777777776 5
Q ss_pred cCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 195 KDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 195 ~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
.=+---+-||-.. . ..+.+..+++++.+++++.+ .++++.
T Consensus 99 ~~DGIdiDwE~~~---~----~~~~~~~fv~~Lr~~l~~~~--~~lt~a 138 (253)
T cd06545 99 NLDGIDVDLEGPD---V----TFGDYLVFIRALYAALKKEG--KLLTAA 138 (253)
T ss_pred CCCceeEEeeccC---c----cHhHHHHHHHHHHHHHhhcC--cEEEEE
Confidence 5443334454321 1 13567788888888887643 355544
No 88
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.36 E-value=8 Score=38.62 Aligned_cols=208 Identities=16% Similarity=0.231 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCC--Cc----ccc-cCCCCC-ChhHHHHHHHHHHHHHHcCCEEEEecccCCcc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGG--YR----ALQ-VSPGSY-NEDTFKALDFVVAEAREYGVYVILSLVNNFKE 141 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~--~~----~~~-~~~g~~-~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~ 141 (412)
++.++.+.++.++++|||+|=+=+..+|. |+ +.. ..+|.. ....++.|-.+|++|+++||.|+.=+...-..
T Consensus 62 ~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a 141 (418)
T COG1649 62 QRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPYRMA 141 (418)
T ss_pred cHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhcccC
Confidence 57899999999999999998773333332 11 111 112221 23456678899999999999997644211000
Q ss_pred CC---CchhhhhhHHhh--CCCC-CCc---CccCC---CHHHHHHHHHHHHHHHhcccccccccccCCCceEEe------
Q 015179 142 YG---GRPRYVEWARER--GQSL-KNE---DDFYT---NAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAW------ 203 (412)
Q Consensus 142 ~g---g~~~~~~w~~~~--g~~~-~~~---~~~~~---~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~w------ 203 (412)
.. .....++|.... +... .+. ..+|- .|++++...+.+..+|++ ....|..|-+| ..|
T Consensus 142 ~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~-YdvDGIQfDd~---fy~~~~~gy 217 (418)
T COG1649 142 PPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRN-YDVDGIQFDDY---FYYPIPFGY 217 (418)
T ss_pred CCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhC-CCCCceeccee---ecccCcccc
Confidence 00 001122332211 0000 001 13333 478999999999999988 12223222222 221
Q ss_pred ----------eeccCCCCCCC----CChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCcc
Q 015179 204 ----------ELMNEARCPTD----PSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDF 269 (412)
Q Consensus 204 ----------el~NEp~~~~~----~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~ 269 (412)
|-.+.|..... .-.+...++++++..+||++.|+..+++...+-++ ... ..|. ...+|+
T Consensus 218 ~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKavKp~v~~svsp~n~~~--~~~-f~y~----~~~qDw 290 (418)
T COG1649 218 DPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAVKPNVKFSVSPFNPLG--SAT-FAYD----YFLQDW 290 (418)
T ss_pred CchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhhCCCeEEEEccCCCCC--ccc-eehh----hhhhhH
Confidence 11111111000 00123555688999999999999888875411000 000 0010 122344
Q ss_pred ccccCCCCcceEeeecCCC
Q 015179 270 ITNNQIPDVDFATIHIYPE 288 (412)
Q Consensus 270 ~~~~~~~~iDv~s~H~Y~~ 288 (412)
..-.....+|.+-...|-.
T Consensus 291 ~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 291 RRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred HHHHHcccHhhhhhhhhcc
Confidence 4333455678888888854
No 89
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=90.21 E-value=1.2 Score=50.65 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=62.8
Q ss_pred CCCEEecCCcEEECC-EEEEEeeeecccc--cccCCCcCcHHHHHHHHHHHHHcCCCEEEecccc-CC----CC---ccc
Q 015179 34 QEFAQTNGSHFAVNG-KPLYLNGFNAYWM--LYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFS-DG----GY---RAL 102 (412)
Q Consensus 34 ~~~v~v~g~~l~~dG-~~~~~~GvN~~~~--~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~-~~----~~---~~~ 102 (412)
.+++.|. -.|.+|| +.+-+-|++..-. -.+| ....|++.|+.++++|+|+|=+-++- -| .| +.+
T Consensus 96 ~~y~~V~-P~L~i~~~~~lPl~~i~iqTvlsK~mG----~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl 170 (1464)
T TIGR01531 96 GGYFVVL-PMLYINADKFLPLDSIALQTVLAKLLG----PLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQL 170 (1464)
T ss_pred ceEEEeC-CeeEECCCcccCcCceeeeeehhhhcC----CHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchh
Confidence 3455555 5677888 7777788887422 1223 24689999999999999999994432 11 11 111
Q ss_pred ccCCCCCC-hhHHHHHHHHHHHHHHc-CCEEEEec
Q 015179 103 QVSPGSYN-EDTFKALDFVVAEAREY-GVYVILSL 135 (412)
Q Consensus 103 ~~~~g~~~-~~~l~~ld~~i~~a~~~-Gi~vil~l 135 (412)
+-+|..+. +...+.+.++++.+++. ||++|+|+
T Consensus 171 ~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~ilDv 205 (1464)
T TIGR01531 171 QLNQHFKSQKDGKNDVQALVEKLHRDWNVLSITDI 205 (1464)
T ss_pred hcChhhcccCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 11111111 12357899999999995 99999998
No 90
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=89.98 E-value=12 Score=36.73 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCc-------cccc-----CCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQV-----SPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~~-----~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.+.+.|+.|+...+|.+-+|.-.+.+|+ .+.. ..|.|. -+.+..+++.|+++||.||.++.
T Consensus 17 ~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT---~~di~eiv~yA~~rgI~vIPEID 91 (348)
T cd06562 17 VDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYT---PEDVKEIVEYARLRGIRVIPEID 91 (348)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceEC---HHHHHHHHHHHHHcCCEEEEecc
Confidence 578999999999999999998654444442 2211 012344 46788999999999999999995
No 91
>PRK09505 malS alpha-amylase; Reviewed
Probab=89.87 E-value=1.2 Score=47.47 Aligned_cols=66 Identities=17% Similarity=0.264 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecc-ccC----------C-----CCcccccCC-CCCCh--hHHHHHHHHHHHHHHcCCE
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWA-FSD----------G-----GYRALQVSP-GSYNE--DTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~-~~~----------~-----~~~~~~~~~-g~~~~--~~l~~ld~~i~~a~~~Gi~ 130 (412)
+..-+.+-|+.|+++|+|+|=+-+ +.. + .|..+.... ...|+ ...+.+..+|+.|+++||+
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 455577789999999999998833 221 0 111111100 11122 2467899999999999999
Q ss_pred EEEec
Q 015179 131 VILSL 135 (412)
Q Consensus 131 vil~l 135 (412)
||+|+
T Consensus 308 VilD~ 312 (683)
T PRK09505 308 ILFDV 312 (683)
T ss_pred EEEEE
Confidence 99997
No 92
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=89.79 E-value=1.7 Score=42.43 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcc----cc--cCCC---------CCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRA----LQ--VSPG---------SYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~----~~--~~~g---------~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
.+.+.+.|+.|+..++|++-++.-.+.+|+- +. ...| .|. -+.+.++++.|+++||.||+.+
T Consensus 17 ~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT---~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 17 VDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYT---KEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBE---HHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCC---HHHHHHHHHHHHHcCCceeeec
Confidence 5789999999999999999996555433321 10 1112 233 4678999999999999999999
Q ss_pred ccCCccCCCchhhhhhHHhhCCC-------------CC--CcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCce
Q 015179 136 VNNFKEYGGRPRYVEWARERGQS-------------LK--NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTI 200 (412)
Q Consensus 136 ~~~w~~~gg~~~~~~w~~~~g~~-------------~~--~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v 200 (412)
.. +|-......+..+-... .. ...-..++|+..+...+.++.+++- |. .+
T Consensus 94 d~----PGH~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~--------f~-~~-- 158 (351)
T PF00728_consen 94 DT----PGHAEAWLKAYPELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADL--------FP-SK-- 158 (351)
T ss_dssp EE----SSS-HHHHHHHHHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHH--------HT-SS--
T ss_pred cC----chHHHHHHHhCchhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhh--------CC-CC--
Confidence 52 33332222221111110 00 0112334688888888888888886 55 22
Q ss_pred EEeee-ccCCCCCC---CC-------------ChhHHHHHHHHHHHHHHhcCCC
Q 015179 201 FAWEL-MNEARCPT---DP-------------SGTLLQEWIKEMAAHVKSIDNH 237 (412)
Q Consensus 201 ~~wel-~NEp~~~~---~~-------------~~~~~~~~~~~~~~~Ir~~dp~ 237 (412)
.+.| +-|..... ++ ..+.+..+++++.+.+++...+
T Consensus 159 -~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~ 211 (351)
T PF00728_consen 159 -YIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKK 211 (351)
T ss_dssp -EEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSE
T ss_pred -eEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCc
Confidence 2344 44444210 00 0123455678889999987765
No 93
>PRK03705 glycogen debranching enzyme; Provisional
Probab=89.68 E-value=0.81 Score=48.68 Aligned_cols=58 Identities=16% Similarity=0.326 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCEEEeccccC-C--------------CCcc---cccCCCCCCh---hHHHHHHHHHHHHHHcCCEEEEec
Q 015179 77 AFQQATKYGMNIARTWAFSD-G--------------GYRA---LQVSPGSYNE---DTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~-~--------------~~~~---~~~~~g~~~~---~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
.|+.|+++|+|+|-+-+..+ . +|.+ +.+. +.|.. ..++.+.++|+.|+++||+||+|+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d-~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALD-PAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccc-cccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 48999999999999943211 0 1211 1111 11211 246789999999999999999998
No 94
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=89.64 E-value=0.55 Score=46.24 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccC-CCCCChhHHHHHHHHHHHHHHcCCEEEEec--ccCCccCCCc--
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVS-PGSYNEDTFKALDFVVAEAREYGVYVILSL--VNNFKEYGGR-- 145 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~-~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l--~~~w~~~gg~-- 145 (412)
...+++.|+.||++|+..|=+-+++ -.+|.. |++|| |..++++++.+++.||++.+.+ |..-...|..
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWW----GiVE~~~p~~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~ 87 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWW----GIVEGEGPQQYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCN 87 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEH----HHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSE
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEe----eeeccCCCCccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccC
Confidence 3588999999999999999994443 234554 78888 8889999999999999987765 5432222221
Q ss_pred hhhhhhHHh
Q 015179 146 PRYVEWARE 154 (412)
Q Consensus 146 ~~~~~w~~~ 154 (412)
-..|.|..+
T Consensus 88 IpLP~Wv~~ 96 (402)
T PF01373_consen 88 IPLPSWVWE 96 (402)
T ss_dssp B-S-HHHHH
T ss_pred CcCCHHHHh
Confidence 125678654
No 95
>PLN02784 alpha-amylase
Probab=89.13 E-value=2.7 Score=45.51 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=54.9
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccC----CCCccc---ccCCCCCChhHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSD----GGYRAL---QVSPGSYNEDTFKALDF 119 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~----~~~~~~---~~~~g~~~~~~l~~ld~ 119 (412)
+|..+.+.|+++.-... + .....+.+.++.|+++|++.|=+.+... .+|.+. ... ..|. ..+.|..
T Consensus 500 ~~~eVmlQgF~Wds~~d-g---~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~ld-s~yG--T~~ELk~ 572 (894)
T PLN02784 500 SGFEILCQGFNWESHKS-G---RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLN-SRYG--TIDELKD 572 (894)
T ss_pred CCceEEEEeEEcCcCCC-C---chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccC-cCcC--CHHHHHH
Confidence 67888999998642211 1 1235778889999999999999854321 112111 111 1122 2568999
Q ss_pred HHHHHHHcCCEEEEec
Q 015179 120 VVAEAREYGVYVILSL 135 (412)
Q Consensus 120 ~i~~a~~~Gi~vil~l 135 (412)
+|+.|+++||+||+|+
T Consensus 573 LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 573 LVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHCCCEEEEEE
Confidence 9999999999999997
No 96
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=1.6 Score=41.78 Aligned_cols=68 Identities=25% Similarity=0.314 Sum_probs=47.9
Q ss_pred EeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 015179 53 LNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVI 132 (412)
Q Consensus 53 ~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vi 132 (412)
..|+..|+... ..+.-.+.|+.|.+.||. |++.-- +.++ ..+...+.+++++++.|.++|++||
T Consensus 3 ~~GfSifp~~~------~~~~~~~Yi~~~~~~Gf~--~IFtsl------~~~~--~~~~~~~~~~~ell~~Anklg~~vi 66 (360)
T COG3589 3 MLGFSIFPNRS------PKEKDIAYIDRMHKYGFK--RIFTSL------LIPE--EDAELYFHRFKELLKEANKLGLRVI 66 (360)
T ss_pred ceeEEeccCCC------cchhHHHHHHHHHHcCcc--ceeeec------ccCC--chHHHHHHHHHHHHHHHHhcCcEEE
Confidence 35666655211 245778899999999999 663210 1111 1134689999999999999999999
Q ss_pred Eecc
Q 015179 133 LSLV 136 (412)
Q Consensus 133 l~l~ 136 (412)
+|+.
T Consensus 67 vDvn 70 (360)
T COG3589 67 VDVN 70 (360)
T ss_pred EEcC
Confidence 9985
No 97
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=88.28 E-value=11 Score=41.72 Aligned_cols=112 Identities=18% Similarity=0.318 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecccCCccCCC------chhh-hhhHH---hhCCCCCCc---Cc-cCCCHHHHHHHHHH
Q 015179 113 TFKALDFVVAEAREYGVYVILSLVNNFKEYGG------RPRY-VEWAR---ERGQSLKNE---DD-FYTNAVVKQYYKNH 178 (412)
Q Consensus 113 ~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg------~~~~-~~w~~---~~g~~~~~~---~~-~~~~~~~~~~~~~~ 178 (412)
.+..+.++|+.|+++||+||+|+--.....++ .+.+ +.|.. ..|. .... .+ -..++.+++.+.+.
T Consensus 402 Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~-~~n~~~~~d~a~e~~~Vrk~iiDs 480 (898)
T TIGR02103 402 RIKEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGG-VENSTCCSNTATEHRMMAKLIVDS 480 (898)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCC-eecCCCCcCCCCCCHHHHHHHHHH
Confidence 35688999999999999999998311111111 0111 11110 0110 0000 01 12357788888888
Q ss_pred HHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEeccccc
Q 015179 179 VKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGF 247 (412)
Q Consensus 179 ~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~ 247 (412)
++..++. |+=+- +-++++..-. ..+++++.+++|+++|+..+ +| ++|
T Consensus 481 l~~W~~e--------y~VDG--FRfDlm~~~~----------~~f~~~~~~~l~~i~pdi~l-~G-EgW 527 (898)
T TIGR02103 481 LVVWAKD--------YKVDG--FRFDLMGHHP----------KAQMLAAREAIKALTPEIYF-YG-EGW 527 (898)
T ss_pred HHHHHHH--------cCCCE--EEEechhhCC----------HHHHHHHHHHHHHhCCCEEE-Ee-cCC
Confidence 8888876 66542 2257665431 45678888899999998555 45 455
No 98
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=86.75 E-value=2.6 Score=45.73 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecccc---CCCCcccccC-CCCCCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFS---DGGYRALQVS-PGSYNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~---~~~~~~~~~~-~g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+...+.+.++.++++|+++|=+-++. .++...+... ....++ ...+.+..+++.|+++||+||+|+-
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45678999999999999999884432 1111111100 011121 2367899999999999999999973
No 99
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=85.72 E-value=2.3 Score=41.67 Aligned_cols=66 Identities=24% Similarity=0.316 Sum_probs=43.2
Q ss_pred eeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEecc-ccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 015179 54 NGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWA-FSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVI 132 (412)
Q Consensus 54 ~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~-~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vi 132 (412)
.|+..|.... ..+...+.|+.+++.||+ |+|. +. .++ .-.+..++++.+++++|+++||.|+
T Consensus 2 lGiSvY~~~~------~~~~~~~yi~~a~~~Gf~--~iFTSL~-------ipe--~~~~~~~~~~~~l~~~a~~~~~~v~ 64 (357)
T PF05913_consen 2 LGISVYPGQS------SFEENKAYIEKAAKYGFK--RIFTSLH-------IPE--DDPEDYLERLKELLKLAKELGMEVI 64 (357)
T ss_dssp EEEEE-CCCS-------HHHHHHHHHHHHCTTEE--EEEEEE------------------HHHHHHHHHHHHHHCT-EEE
T ss_pred cEEEEeCCCC------CHHHHHHHHHHHHHCCCC--EEECCCC-------cCC--CCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 4666654311 357889999999999999 5543 21 111 1135678999999999999999999
Q ss_pred Eecc
Q 015179 133 LSLV 136 (412)
Q Consensus 133 l~l~ 136 (412)
+|+.
T Consensus 65 ~Dis 68 (357)
T PF05913_consen 65 ADIS 68 (357)
T ss_dssp EEE-
T ss_pred EECC
Confidence 9995
No 100
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=85.24 E-value=3.4 Score=45.14 Aligned_cols=67 Identities=18% Similarity=0.136 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecccc---CCCCcccccC-CCCCCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFS---DGGYRALQVS-PGSYNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~---~~~~~~~~~~-~g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+...+.+.++.++++|+|+|=+-++. .++...+... ....++ ...+.+.++++.|+++||+||+|+-
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 45688999999999999999884432 1111111100 011122 1357899999999999999999984
No 101
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=84.91 E-value=2.4 Score=48.44 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCEEEecc-ccCCC--------------Cccc---ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 76 AAFQQATKYGMNIARTWA-FSDGG--------------YRAL---QVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~-~~~~~--------------~~~~---~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+.|+.|+++|+|+|=+-+ +...+ |... .+. ..|.....+.+.++|+.|+++||+||+|+
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~d-p~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPD-PRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcC-hhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999999943 22110 1110 111 11221246789999999999999999997
No 102
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=84.62 E-value=2.1 Score=45.85 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCEEEeccccCC---------------CCccc---ccCCCCCCh-hHHHHHHHHHHHHHHcCCEEEEec
Q 015179 77 AFQQATKYGMNIARTWAFSDG---------------GYRAL---QVSPGSYNE-DTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~---------------~~~~~---~~~~g~~~~-~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
.|+.|+++|+|+|-+-+..+. +|.+. .+. +.|.. ...+.+.++|+.|+++||+||+|+
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d-~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPE-PRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccC-hhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 589999999999999442210 01110 111 11110 136789999999999999999998
No 103
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=82.46 E-value=12 Score=35.42 Aligned_cols=129 Identities=17% Similarity=0.189 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccC-CccCCCchhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNN-FKEYGGRPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~-w~~~gg~~~~ 148 (412)
+.+++.+.-+.+++.|+|.|=+--.+ .. +....++.++.+.++-+..+.+||++.|.+.-. ....||.+
T Consensus 55 ~~~R~~~YARllASiGINgvvlNNVN---a~-----~~~Lt~~~l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL~-- 124 (328)
T PF07488_consen 55 DLTRYRDYARLLASIGINGVVLNNVN---AN-----PKLLTPEYLDKVARLADVFRPYGIKVYLSVNFASPIELGGLP-- 124 (328)
T ss_dssp --HHHHHHHHHHHHTT--EEE-S-SS----------CGGGSTTTHHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-S--
T ss_pred chhHHHHHHHHHhhcCCceEEecccc---cC-----hhhcCHHHHHHHHHHHHHHhhcCCEEEEEeeccCCcccCCcC--
Confidence 45789999999999999988773221 11 122356779999999999999999999998521 00112221
Q ss_pred hhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeec----cCCCCCCCCChhHHHHHH
Q 015179 149 VEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELM----NEARCPTDPSGTLLQEWI 224 (412)
Q Consensus 149 ~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~----NEp~~~~~~~~~~~~~~~ 224 (412)
..+ .-||++++.|++-...+ |+.-|..-++-+- .+|.+.. .+....+=.
T Consensus 125 ----------TaD----Pld~~V~~WW~~k~~eI-----------Y~~IPDfgGflVKAdSEGqPGP~~--YgRthAdGA 177 (328)
T PF07488_consen 125 ----------TAD----PLDPEVRQWWKDKADEI-----------YSAIPDFGGFLVKADSEGQPGPFT--YGRTHADGA 177 (328)
T ss_dssp -----------------TTSHHHHHHHHHHHHHH-----------HHH-TT--EEEE--SBTTB--GGG--GT--HHHHH
T ss_pred ----------cCC----CCCHHHHHHHHHHHHHH-----------HHhCCCccceEEEecCCCCCCCcc--cCCCchhhH
Confidence 000 12678877777777766 4445666666553 3333221 122233334
Q ss_pred HHHHHHHHhcC
Q 015179 225 KEMAAHVKSID 235 (412)
Q Consensus 225 ~~~~~~Ir~~d 235 (412)
+-++++++...
T Consensus 178 NmlA~Al~P~G 188 (328)
T PF07488_consen 178 NMLARALKPHG 188 (328)
T ss_dssp HHHHHHHGGGT
T ss_pred HHHHHHhhccC
Confidence 55556665543
No 104
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=81.49 E-value=3.8 Score=43.73 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=40.5
Q ss_pred HHHHHHcCCCEEEeccc---cCC------------CCccc---ccCCCCC--C---hhHHHHHHHHHHHHHHcCCEEEEe
Q 015179 78 FQQATKYGMNIARTWAF---SDG------------GYRAL---QVSPGSY--N---EDTFKALDFVVAEAREYGVYVILS 134 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~---~~~------------~~~~~---~~~~g~~--~---~~~l~~ld~~i~~a~~~Gi~vil~ 134 (412)
|+.+|++|+++|.+.+. .+. +|.++ .+.+ .| + ...+..+..+|+.++++||.||+|
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~-~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEG-RYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCc-cccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999432 111 13322 2221 22 2 236788999999999999999999
Q ss_pred c
Q 015179 135 L 135 (412)
Q Consensus 135 l 135 (412)
+
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 8
No 105
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=81.22 E-value=4.7 Score=41.25 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=43.3
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCC--CCcccccCC-CCCC--hhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDG--GYRALQVSP-GSYN--EDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~--~~~~~~~~~-g~~~--~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+..-+.+-++.++++|+++|=+-++-.. .+..+...+ ...+ ...++.++++++.|+++||+|++|+
T Consensus 27 dl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 27 DLKGITEKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred cHHhHHHhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3445558899999999999987433211 111111000 0111 2347889999999999999999998
No 106
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=81.00 E-value=5.3 Score=46.81 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC---CCCccccc-CCCCCCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD---GGYRALQV-SPGSYNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~---~~~~~~~~-~~g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
....+.+.++.++++|+|+|=+-++.. ++...+.. .....++ ...+.++++++.|+++||+||+|+-
T Consensus 756 tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 756 TFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 456789999999999999998833221 11111110 0111222 2367899999999999999999984
No 107
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=80.50 E-value=5.8 Score=36.90 Aligned_cols=60 Identities=15% Similarity=0.328 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCEEEecc---ccCCCCcc-cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWA---FSDGGYRA-LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~---~~~~~~~~-~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-.++..|+.++++||.-|-=|+ +.||.++. +|.. | -.+++=-++|..|++.||..+.-.+
T Consensus 95 ~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~-G----mgy~~EVemi~~A~~~gl~T~~yvf 158 (268)
T PF09370_consen 95 RDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEET-G----MGYDREVEMIRKAHEKGLFTTAYVF 158 (268)
T ss_dssp --HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHT-T------HHHHHHHHHHHHHTT-EE--EE-
T ss_pred CcHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhc-C----CCHHHHHHHHHHHHHCCCeeeeeec
Confidence 3788999999999999888754 12222211 1111 1 1244444789999999999876554
No 108
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=80.03 E-value=2.9 Score=39.38 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHH
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWAR 153 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~ 153 (412)
.++.|+.++++|+..|-+ .|-+. -++...+.++++++.|.++.|. |++|....+.|-+..||+...
T Consensus 108 ~~~~f~~~~~~Gv~GvKi-dF~~~-----------d~Q~~v~~y~~i~~~AA~~~Lm--vnfHg~~kPtG~~RTyPN~mT 173 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKI-DFMDR-----------DDQEMVNWYEDILEDAAEYKLM--VNFHGATKPTGLRRTYPNLMT 173 (273)
T ss_dssp HHHHHHHHHHCTEEEEEE-E--SS-----------TSHHHHHHHHHHHHHHHHTT-E--EEETTS---TTHHHCSTTEEE
T ss_pred HHHHHHHHHHcCCCEEee-CcCCC-----------CCHHHHHHHHHHHHHHHHcCcE--EEecCCcCCCcccccCccHHH
Confidence 589999999999999999 65422 1677899999999999999986 577854322232334555443
No 109
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=79.79 E-value=14 Score=35.60 Aligned_cols=157 Identities=15% Similarity=0.191 Sum_probs=76.4
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEecccc---------C-------------CC----Cccc---ccCCCCCC----hhHHH
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAFS---------D-------------GG----YRAL---QVSPGSYN----EDTFK 115 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~~---------~-------------~~----~~~~---~~~~g~~~----~~~l~ 115 (412)
.+-+++|+.||.|+=.|+|..=.++-- + |+ |... +.-.|-.+ +...+
T Consensus 16 WdW~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~ 95 (333)
T PF05089_consen 16 WDWERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAE 95 (333)
T ss_dssp --HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHH
Confidence 467899999999999999987663311 0 00 1011 11112122 22233
Q ss_pred HHHHHHHHHHHcCCEEEEecccCCccCCCc-hhh--------hhhHHhhCCCCCCcCccC--CCHHHHHHHHHHHHHHHh
Q 015179 116 ALDFVVAEAREYGVYVILSLVNNFKEYGGR-PRY--------VEWARERGQSLKNEDDFY--TNAVVKQYYKNHVKAVLT 184 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~-~~~--------~~w~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~v~ 184 (412)
-=.++++..++.||..++--+... .+... ..+ ..|. |. ....+. ++|-..+.-+.|+++..+
T Consensus 96 Lq~kIl~RmreLGm~PVLPaF~G~-VP~~~~~~~P~a~i~~~~~W~---~f---~~~~~L~P~dplF~~i~~~F~~~q~~ 168 (333)
T PF05089_consen 96 LQKKILDRMRELGMTPVLPAFAGH-VPRAFKRKYPNANITRQGNWN---GF---CRPYFLDPTDPLFAEIAKLFYEEQIK 168 (333)
T ss_dssp HHHHHHHHHHHHT-EEEEE--S-E-E-TTHHHHSTT--EE---EET---TE---E--EEE-SS--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCCcCCC-CChHHHhcCCCCEEeeCCCcC---CC---CCCceeCCCCchHHHHHHHHHHHHHH
Confidence 334799999999999998754210 01100 001 1121 00 001111 256666666777777777
Q ss_pred cccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 185 RINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 185 r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
. |+ ...+.+-+..||-..... ..+.+.+..+.+.+++++.||+.+=.+
T Consensus 169 ~--------yG-~~~~Y~~D~FnE~~p~~~-~~~~l~~~s~~v~~am~~~dp~AvWvm 216 (333)
T PF05089_consen 169 L--------YG-TDHIYAADPFNEGGPPSG-DPEYLANVSKAVYKAMQAADPDAVWVM 216 (333)
T ss_dssp H--------H----SEEE--TTTTS---TT-S---HHHHHHHHHHHHHHH-TT-EEEE
T ss_pred h--------cC-CCceeCCCccCCCCCCCC-chHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 6 87 457888899999887543 223478888999999999999875543
No 110
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=79.74 E-value=24 Score=33.88 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=40.9
Q ss_pred cCcHHHHHHHHHHHHHcCCCEEEeccccCCCCccc-ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 68 PSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRAL-QVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 68 ~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~-~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
|++.+.-.+.|+.+++.|+|+- .+...+-+.+ ..-...|+++.++.|.++++.|+++|+..+..+|
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~Y---iYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais 77 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTY---IYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAIS 77 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EE---EE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB
T ss_pred CCCHHHHHHHHHHHHHcCCceE---EECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3456677788999999999943 4432211111 1112347888999999999999999999999998
No 111
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=79.15 E-value=9.6 Score=37.20 Aligned_cols=95 Identities=18% Similarity=0.222 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCC-HHHHHHHHHHHHHHHhcccccccccccCC
Q 015179 119 FVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTN-AVVKQYYKNHVKAVLTRINSITGVAYKDD 197 (412)
Q Consensus 119 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~v~r~n~~~g~~y~~~ 197 (412)
.+++.|+++|++|+-+++..|. ++. .|.. .+..+ ++.+..+.+-+..+++. |+=+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~--~~~----~~~~----------~lL~~~~~~~~~~a~kLv~lak~--------yGfD 105 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWT--GQV----EWLE----------DFLKKDEDGSFPVADKLVEVAKY--------YGFD 105 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCC--Cch----HHHH----------HHhccCcccchHHHHHHHHHHHH--------hCCC
Confidence 5688999999999999986543 221 2221 12233 55556677777778886 6655
Q ss_pred CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 198 PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 198 p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
- |.|==|-........+.+.+|++++.+..++..|...|+
T Consensus 106 G----w~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~ 145 (339)
T cd06547 106 G----WLINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVI 145 (339)
T ss_pred c----eEeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 3 433333322111135678999999999999988876554
No 112
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=78.87 E-value=53 Score=32.69 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCCEEEecc-ccCCCCcccccCCCCCC----hhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCch
Q 015179 72 AKVTAAFQQATKYGMNIARTWA-FSDGGYRALQVSPGSYN----EDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRP 146 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~-~~~~~~~~~~~~~g~~~----~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~ 146 (412)
-+.++.++.+|++|++.|=+-. ++|| +-.+...-..|+ +-..+-+.++.+.|+++||++-+-... |++.. +
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDG-F~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y~S~-~DW~~--p 156 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDG-FCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLYHSL-FDWFN--P 156 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCC-ccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEEcCH-HHhCC--C
Confidence 3567889999999999887721 2232 101110001111 013467889999999999999996542 22110 1
Q ss_pred hhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHH
Q 015179 147 RYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKE 226 (412)
Q Consensus 147 ~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~ 226 (412)
.|..- .... .....+....+..+.+...++.|+.+ |+. .++=++...+-. ...+ -..+
T Consensus 157 ~y~~~---~~~~-~~~~~~~~~~~y~~~~~~Ql~ELit~--------Ygp--d~lWfD~~~~~~------~~~~--~~~~ 214 (384)
T smart00812 157 LYAGP---TSSD-EDPDNWPRFQEFVDDWLPQLRELVTR--------YKP--DLLWFDGGWEAP------DDYW--RSKE 214 (384)
T ss_pred ccccc---cccc-cccccchhHHHHHHHHHHHHHHHHhc--------CCC--ceEEEeCCCCCc------cchh--cHHH
Confidence 01000 0000 00011111233333347889999998 976 566556543211 1111 2578
Q ss_pred HHHHHHhcCCCC
Q 015179 227 MAAHVKSIDNHH 238 (412)
Q Consensus 227 ~~~~Ir~~dp~~ 238 (412)
+++.+|++.|+.
T Consensus 215 l~~~~~~~qP~~ 226 (384)
T smart00812 215 FLAWLYNLSPVK 226 (384)
T ss_pred HHHHHHHhCCCC
Confidence 899999999987
No 113
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.47 E-value=86 Score=31.30 Aligned_cols=174 Identities=16% Similarity=0.232 Sum_probs=87.6
Q ss_pred EEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCc-----------ccccCCCCCChhHHHHHHHH
Q 015179 52 YLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYR-----------ALQVSPGSYNEDTFKALDFV 120 (412)
Q Consensus 52 ~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-----------~~~~~~g~~~~~~l~~ld~~ 120 (412)
.+.|.|.+...+.. .+.+.+.+.++.++++|++.+=+ .+| |- .+.+.+.+|. .-|..+
T Consensus 41 ~pv~~nsW~~~~~d---~~e~~i~~~a~~~~~~G~e~fvi---DDG-W~~~r~~d~~~~GdW~~~~~kFP----~Gl~~l 109 (394)
T PF02065_consen 41 PPVGWNSWEAYYFD---ITEEKILELADAAAELGYEYFVI---DDG-WFGGRDDDNAGLGDWEPDPKKFP----NGLKPL 109 (394)
T ss_dssp --EEEESHHHHTTG-----HHHHHHHHHHHHHHT-SEEEE----SS-SBCTESTTTSTTSBECBBTTTST----THHHHH
T ss_pred CceEEEcccccCcC---CCHHHHHHHHHHHHHhCCEEEEE---cCc-cccccCCCcccCCceeEChhhhC----CcHHHH
Confidence 35577765432222 14578899999999999996666 222 21 1223334443 237889
Q ss_pred HHHHHHcCCEEEEecccCCccCCC--chhhhhhHHhh-CCCC-C-CcC--ccCCCHHHHHHHHHHHHHHHhccccccccc
Q 015179 121 VAEAREYGVYVILSLVNNFKEYGG--RPRYVEWARER-GQSL-K-NED--DFYTNAVVKQYYKNHVKAVLTRINSITGVA 193 (412)
Q Consensus 121 i~~a~~~Gi~vil~l~~~w~~~gg--~~~~~~w~~~~-g~~~-~-~~~--~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~ 193 (412)
++.++++||+.-|=+.-.-...+. ....++|.-.. +... . ... --+++|++++...+.+..+++.
T Consensus 110 ~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~-------- 181 (394)
T PF02065_consen 110 ADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLRE-------- 181 (394)
T ss_dssp HHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHh--------
Confidence 999999999977655210000010 11234564221 1100 0 111 1245799999888888887765
Q ss_pred ccCCCceEEeeeccCCCCCCCCC-hhHHHHH---HHHHHHHHHhcCCCCeEEecccc
Q 015179 194 YKDDPTIFAWELMNEARCPTDPS-GTLLQEW---IKEMAAHVKSIDNHHLLEVGLEG 246 (412)
Q Consensus 194 y~~~p~v~~wel~NEp~~~~~~~-~~~~~~~---~~~~~~~Ir~~dp~~lV~~g~~g 246 (412)
++=+ .|. |+..-.......+. .+.+.+. +-++.+.+|+..|+.+|-..+.|
T Consensus 182 ~gid-YiK-~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE~CssG 236 (394)
T PF02065_consen 182 WGID-YIK-WDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIENCSSG 236 (394)
T ss_dssp TT-S-EEE-EE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEEE-BTT
T ss_pred cCCC-EEE-eccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEEeccCC
Confidence 3311 232 55432222211111 1222222 34688899999999988765433
No 114
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=76.17 E-value=23 Score=34.79 Aligned_cols=90 Identities=16% Similarity=0.071 Sum_probs=59.8
Q ss_pred HHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCC
Q 015179 119 FVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDP 198 (412)
Q Consensus 119 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p 198 (412)
.++..|+++|++|++.-.. + .....+++.++.|.+-+..++++ |.=+-
T Consensus 68 ~~~~~A~~~~v~v~~~~~~--------~----------------~~~l~~~~~R~~fi~siv~~~~~--------~gfDG 115 (358)
T cd02875 68 ELLCYAHSKGVRLVLKGDV--------P----------------LEQISNPTYRTQWIQQKVELAKS--------QFMDG 115 (358)
T ss_pred HHHHHHHHcCCEEEEECcc--------C----------------HHHcCCHHHHHHHHHHHHHHHHH--------hCCCe
Confidence 7888999999999975210 0 00134688888888888778877 55443
Q ss_pred ceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 199 TIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 199 ~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
--+-||--+... ....+.+..+++++.+++++..+.-++++.
T Consensus 116 IdIDwE~p~~~~---~~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 116 INIDIEQPITKG---SPEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred EEEcccCCCCCC---cchHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 344566433211 123567888999999999887776667664
No 115
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.12 E-value=8.1 Score=36.28 Aligned_cols=61 Identities=13% Similarity=0.235 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.++.++.+|++.||++.+.. + ..+.....-+...+.++++.+.|+++||++.+..|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~--~--~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDV--Y--YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCccc--c--cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 4578889999999999999853320 0 01111000123456789999999999999999876
No 116
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=73.79 E-value=10 Score=35.50 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.++..+.+|..+|+++....+ + .......-+...+.++++.+.|+++||++.+..+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~~~~~~~-~---~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~ 150 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLISAAHAG-Y---LTPPNVIWGRLAENLSELCEYAENIGMDLILEPL 150 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 46777889999999999999654321 1 1111111134556899999999999999998876
No 117
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=73.44 E-value=35 Score=31.13 Aligned_cols=77 Identities=26% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE 126 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~ 126 (412)
+|+.+.+.|.---+. -.++...+.+.++.+++.|+.-|.+|.|.||.-. -+..+...|+++.+.+.+
T Consensus 26 ~~~~lHl~GLlSdGG-----VHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt--------~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 26 NGGRLHLMGLLSDGG-----VHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDT--------PPKSALKYLEELEEKLAE 92 (223)
T ss_dssp TT--EEEEEEESS-S-----SS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS---------TTTHHHHHHHHHHHHHH
T ss_pred cCCeEEEEEEecCCC-----ccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCC--------CcchHHHHHHHHHHHHHh
Confidence 567788888653221 1123568889999999999999999989877421 134578899999999999
Q ss_pred cCCEEEEecc
Q 015179 127 YGVYVILSLV 136 (412)
Q Consensus 127 ~Gi~vil~l~ 136 (412)
.|+--|.++.
T Consensus 93 ~~~g~IAsv~ 102 (223)
T PF06415_consen 93 IGIGRIASVS 102 (223)
T ss_dssp HTCTEEEEEE
T ss_pred hCCceEEEEe
Confidence 9887777775
No 118
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=73.44 E-value=33 Score=31.87 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.++++|++.|=+ .+++.. ..|.+. =+.+.+=+..|.++||.+|+++-.
T Consensus 79 ~~mLkd~G~~~vii-GHSERR--------~~f~Et-d~~v~~K~~~a~~~gl~pIvCiGE 128 (250)
T PRK00042 79 AEMLKDLGVKYVII-GHSERR--------QYFGET-DELVNKKVKAALKAGLTPILCVGE 128 (250)
T ss_pred HHHHHHCCCCEEEe-Cccccc--------CccCcC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 67889999999988 665321 112221 122333344499999999999863
No 119
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=73.41 E-value=97 Score=30.45 Aligned_cols=87 Identities=14% Similarity=0.289 Sum_probs=44.6
Q ss_pred CCCcceEeeecCCCCCCCCC-CCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCC-CCCChHHHHHHHHHHHH
Q 015179 275 IPDVDFATIHIYPEQWLPPG-NTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKY-PGYSEQKRNSYFQKVYD 352 (412)
Q Consensus 275 ~~~iDv~s~H~Y~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~-~g~~~~~r~~~~~~~~~ 352 (412)
...+|++.+++|........ + .+...+..|+.-.-..+.+ .+..+++|==|..... .|+-.+ ....++++.
T Consensus 205 ~~~fDf~~IQFYNN~~CS~SsG----~~Q~~fDsW~~ya~~~a~n-Kn~~lFLGLPg~~~AAGSGYIsp--~~Lt~~~l~ 277 (568)
T KOG4701|consen 205 ENSFDFLSIQFYNNSTCSGSSG----SRQSTFDAWVEYAEDSAYN-KNTSLFLGLPGHQNAAGSGYISP--KNLTRDLLN 277 (568)
T ss_pred ccccceEEEEeecCCCcccccC----cccccHHHHHHHHhhhccc-ccceEEeeccCCcccccCCccCc--hHHHHHHHH
Confidence 35689999999975322210 1 0112223344322222222 3567898877766553 355322 234455554
Q ss_pred HHHHhhhcCCCccccccccc
Q 015179 353 AIYDCAKSKGPCGGGLFWQL 372 (412)
Q Consensus 353 ~~~~~~~~~~~~~G~~~W~~ 372 (412)
.+.+. ....|.+.|.-
T Consensus 278 ~~a~S----~~fGGv~LWd~ 293 (568)
T KOG4701|consen 278 YKANS----TLFGGVTLWDT 293 (568)
T ss_pred hhhhc----cccccEEEeec
Confidence 44322 33678999974
No 120
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=73.22 E-value=68 Score=29.41 Aligned_cols=153 Identities=10% Similarity=0.122 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccC-CCchhhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEY-GGRPRYV 149 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~-gg~~~~~ 149 (412)
.+.+++.+...+++|+.+|.+-.+. .- +++....-.....+.|...+++|+++++.+-+.+.+. .+ +....+.
T Consensus 95 leiM~KaI~LA~dLGIRtIQLAGYD-VY---YE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt--pfm~sIsk~~ 168 (287)
T COG3623 95 LEIMEKAIQLAQDLGIRTIQLAGYD-VY---YEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDT--PFMNSISKWL 168 (287)
T ss_pred HHHHHHHHHHHHHhCceeEeeccce-ee---eccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc--HHHHHHHHHH
Confidence 3457788888999999999993332 22 2333222223456778899999999999998888642 12 1122233
Q ss_pred hhHHhhCCCCCCcCccCCCHHHHHHHH-HHHHHHHhcccccccccccCCCceEEeeeccCCC-------CCC-CCChhHH
Q 015179 150 EWARERGQSLKNEDDFYTNAVVKQYYK-NHVKAVLTRINSITGVAYKDDPTIFAWELMNEAR-------CPT-DPSGTLL 220 (412)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~-------~~~-~~~~~~~ 220 (412)
.|...-+.|. -..|.|-....+|. +....+ +.+++.|.++.+-.--. ... -|.|+.-
T Consensus 169 ~~~~~I~sP~---f~vYPDiGNlsaw~ndv~~El-----------~lG~~~I~aiHlKDTy~vte~~~GqFrdvpfGeG~ 234 (287)
T COG3623 169 KYDKYINSPW---FTVYPDIGNLSAWNNDVQSEL-----------QLGIDKIVAIHLKDTYAVTETSPGQFRDVPFGEGC 234 (287)
T ss_pred HHHHHhCCCc---EEecCCcccHhhhhhhHHHHH-----------HcCcCceEEEEecccccccccCCCccccCCcCCcc
Confidence 3332211110 00111211222222 222333 34455666666644311 111 1223333
Q ss_pred HHHHHHHHHHHHhcCCCCeEEecc
Q 015179 221 QEWIKEMAAHVKSIDNHHLLEVGL 244 (412)
Q Consensus 221 ~~~~~~~~~~Ir~~dp~~lV~~g~ 244 (412)
.+| .++.+.+|+.+++-+..+-+
T Consensus 235 Vdf-~~~f~~lk~~ny~gpfLIEM 257 (287)
T COG3623 235 VDF-EECFKTLKQLNYRGPFLIEM 257 (287)
T ss_pred hhH-HHHHHHHHHhCCCCceehhh
Confidence 445 78899999999988877654
No 121
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.83 E-value=49 Score=31.09 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=44.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...+..+.+|++|+..+|...|... ..|..|..-.-+.+..+-+.|++.||.++-++++
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpR------Ts~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d 100 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPR------TSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMD 100 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCC------CCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 5678889999999999999999655411 1122233223456677778899999999999985
No 122
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.65 E-value=22 Score=35.96 Aligned_cols=162 Identities=9% Similarity=0.126 Sum_probs=94.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC---------CC-----------------Cccc---ccCCCCCChhHH----HH
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD---------GG-----------------YRAL---QVSPGSYNEDTF----KA 116 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~---------~~-----------------~~~~---~~~~g~~~~~~l----~~ 116 (412)
.-+.||+.||.|+=.|+|.+=.+.--+ .+ |... ..-.|-..++-+ --
T Consensus 76 ~w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 76 GWEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred chHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 357999999999999999887642110 00 1000 011122233221 12
Q ss_pred HHHHHHHHHHcCCEEEEecccCCcc------C--CCchhhhhhHHhhCCCCC-CcCcc--CCCHHHHHHHHHHHHHHHhc
Q 015179 117 LDFVVAEAREYGVYVILSLVNNFKE------Y--GGRPRYVEWARERGQSLK-NEDDF--YTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 117 ld~~i~~a~~~Gi~vil~l~~~w~~------~--gg~~~~~~w~~~~g~~~~-~~~~~--~~~~~~~~~~~~~~~~~v~r 185 (412)
=.++|+...+.||.+++--+....+ + ......+.|.. .+.. ...-+ ..||-.++--..|+++..+.
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~---f~s~~~C~l~v~P~dplF~eIgs~Flr~~~ke 232 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNN---FTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKE 232 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCC---CCcceeeeEEccCCcchHHHHHHHHHHHHHHH
Confidence 2478999999999998865421000 0 00001112210 0000 00000 12566677777888888887
Q ss_pred ccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 186 INSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 186 ~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
|++-.+|..=+.+||-.+... +++-.+.-..+++++.|++|++.+=..-
T Consensus 233 --------fG~~tniy~~DpFNE~~Pp~s-epey~~staaAiyesm~kvdknaVWllQ 281 (666)
T KOG2233|consen 233 --------FGGVTNIYSADPFNEILPPES-EPEYVKSTAAAIYESMKKVDKNAVWLLQ 281 (666)
T ss_pred --------hCCcccccccCcccccCCCCC-ChHHHHHHHHHHHHHHhccCcceEEeee
Confidence 998778888899999877542 3344556667777888999998776654
No 123
>PRK14565 triosephosphate isomerase; Provisional
Probab=72.51 E-value=18 Score=33.36 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=33.2
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
...++++|++.+=+ .+++.. ..|++. -+.+.+=+..|.++||.+++++-.
T Consensus 78 ~~mLkd~G~~~vii-GHSERR--------~~f~Et-d~~V~~Kv~~al~~gl~pIvCiGE 127 (237)
T PRK14565 78 AKMLKECGCSYVIL-GHSERR--------STFHET-DSDIRLKAESAIESGLIPIICVGE 127 (237)
T ss_pred HHHHHHcCCCEEEE-Cccccc--------CcCCcC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 67789999999988 665321 112221 122334448899999999999863
No 124
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=72.20 E-value=89 Score=30.15 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHHhcccccccccccCC--CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 168 NAVVKQYYKNHVKAVLTRINSITGVAYKDD--PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 168 ~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~--p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
+++.++.+.+++..+.++ .|.+- .++=+|+.++|.........+...++++++++++|+..|+.+|..
T Consensus 142 ~~~W~~il~~rl~~l~~k-------GfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~ 211 (315)
T TIGR01370 142 DPEWKAIAFSYLDRVIAQ-------GFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIP 211 (315)
T ss_pred cHHHHHHHHHHHHHHHHc-------CCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 467777777777666554 24431 245567777665422111235567789999999999999977754
No 125
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=71.78 E-value=11 Score=33.52 Aligned_cols=45 Identities=13% Similarity=0.182 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYV 131 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~v 131 (412)
..+.-++.++++|.++|.+++.. ....++.+..+.+.|.++|+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPm~--------------Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKFFPMG--------------GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE---T--------------TTTTHHHHHHHHHHHHHCT-EE
T ss_pred cHHHHHHHHHHcCCCeeeEeecC--------------CcccHHHHHHHHHHHHHcCcee
Confidence 57888999999999999997553 2345888889999999999998
No 126
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=71.32 E-value=1e+02 Score=29.91 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYV 149 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~ 149 (412)
+.+++.+.++.+++.|+..==++. . ..|.. ....-.+|++.|-...++++.+++.|+++++.++..-..-.+.+.|.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~l-D-~~~~~-~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~ 98 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWL-D-IEHTD-GKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYK 98 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEE-C-hHHhC-CCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHH
Confidence 356889999999999987544422 1 11100 01112356667777889999999999999998873211000112222
Q ss_pred hhHHhhC--------CCC-----C--CcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCC
Q 015179 150 EWARERG--------QSL-----K--NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 211 (412)
Q Consensus 150 ~w~~~~g--------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~ 211 (412)
. +.+.| .+. . ..--=+++|++++.+.+.++.+... . +.+....|.=+|||..
T Consensus 99 e-~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~-~~g~~g~w~D~~Ep~~ 165 (339)
T cd06603 99 E-AKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYK--------G-STENLYIWNDMNEPSV 165 (339)
T ss_pred H-HHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhc--------c-cCCCceEEeccCCccc
Confidence 1 11111 000 0 0011245799999888888776432 1 2222334555888863
No 127
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.22 E-value=17 Score=36.96 Aligned_cols=64 Identities=22% Similarity=0.263 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCc-------ccc----------------------------cCCCCCChhHH
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQ----------------------------VSPGSYNEDTF 114 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~----------------------------~~~g~~~~~~l 114 (412)
..+.+.+.|+.|+...+|.+-+|.-.+.+|+ .+. ...|.|. -
T Consensus 20 ~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT---~ 96 (445)
T cd06569 20 SKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYS---R 96 (445)
T ss_pred CHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhcccccccccccccccccccccCcccCcccCCccC---H
Confidence 3579999999999999999999654443332 110 0012344 3
Q ss_pred HHHHHHHHHHHHcCCEEEEecc
Q 015179 115 KALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 115 ~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+..+++.|+++||.||.++.
T Consensus 97 ~di~eiv~yA~~rgI~VIPEID 118 (445)
T cd06569 97 ADYIEILKYAKARHIEVIPEID 118 (445)
T ss_pred HHHHHHHHHHHHcCCEEEEccC
Confidence 5788999999999999999985
No 128
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=70.14 E-value=12 Score=35.05 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.++.++.+|.+.|+++... .. ........-....+.+.++.+.|+++||.+.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~---~~-~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYD---VY-YEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcc---cc-cCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 457888999999999999984321 00 01000000123456788999999999999999876
No 129
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.72 E-value=7.9 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=8.7
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q 015179 1 MLVTRLFNSFIFLALLVIIY 20 (412)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (412)
|-++.++.+.+|+|+|++|.
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 130
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=68.50 E-value=12 Score=35.24 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.++.++.+|+..|++..+.. .........-....+.+..+.+.|+++||.+.+..|
T Consensus 99 ~~~~~~i~~a~~lG~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~ 159 (283)
T PRK13209 99 EIMRKAIQLAQDLGIRVIQLAGYDV----YYEQANNETRRRFIDGLKESVELASRASVTLAFEIM 159 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccc----cccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeec
Confidence 4577889999999999999843210 001100000123356789999999999999999877
No 131
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=67.38 E-value=67 Score=28.02 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCccc--ccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhh
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRAL--QVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYV 149 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~--~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~ 149 (412)
...++..+.+++.|+..+-++.......... ...... ....++.+.+.++.|++.|...+......+. ...
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~----- 99 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYP-SGP----- 99 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTES-SST-----
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccc-ccc-----
Confidence 4677888888999999777744322111100 001111 3456889999999999999998765432000 000
Q ss_pred hhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHH
Q 015179 150 EWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAA 229 (412)
Q Consensus 150 ~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~ 229 (412)
-...++..+.+.+.++.++++ -+.+.-.++.|....+.... ... .+++..
T Consensus 100 ---------------~~~~~~~~~~~~~~l~~l~~~--------a~~~gv~i~lE~~~~~~~~~--~~~-----~~~~~~ 149 (213)
T PF01261_consen 100 ---------------EDDTEENWERLAENLRELAEI--------AEEYGVRIALENHPGPFSET--PFS-----VEEIYR 149 (213)
T ss_dssp ---------------TSSHHHHHHHHHHHHHHHHHH--------HHHHTSEEEEE-SSSSSSSE--ESS-----HHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHHHhh--------hhhhcceEEEecccCccccc--hhh-----HHHHHH
Confidence 011245666677777777775 44444455555443333211 101 466667
Q ss_pred HHHhcCCCC
Q 015179 230 HVKSIDNHH 238 (412)
Q Consensus 230 ~Ir~~dp~~ 238 (412)
.++++++..
T Consensus 150 ~l~~~~~~~ 158 (213)
T PF01261_consen 150 LLEEVDSPN 158 (213)
T ss_dssp HHHHHTTTT
T ss_pred HHhhcCCCc
Confidence 777777543
No 132
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=66.04 E-value=11 Score=39.97 Aligned_cols=63 Identities=21% Similarity=0.335 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecc---cc----CCCCccc---ccCCCCC----ChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 72 AKVTAAFQQATKYGMNIARTWA---FS----DGGYRAL---QVSPGSY----NEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~---~~----~~~~~~~---~~~~g~~----~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
.-.++++..||.+|.|+|.+.+ |. ..+|... .+. ..| .+.....+.++|+.|+..||.|++|+
T Consensus 255 ~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFaps-srYgt~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 255 GFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPS-SRYGTPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccc-ccccCCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 3467779999999999999933 21 1223211 111 111 13336788999999999999999997
No 133
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=65.49 E-value=9.6 Score=33.55 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCC-CCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSP-GSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~-g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.+++.++.++.+|+..++++... ++...... ..--+...+.|+++.+.|+++|+.+.+..+.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~ 134 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHP 134 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEeccc
Confidence 4578889999999999999996431 00000000 0001245578999999999999999998874
No 134
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=65.19 E-value=23 Score=37.38 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=41.5
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
..++|.|.......+ .+.++..++.+++.|+..+|++...+ ..+.+...++.+++.|..
T Consensus 80 mL~Rg~N~vGy~~~~-----d~vv~~~v~~a~~~Gidv~Rifd~ln----------------d~~n~~~~i~~~k~~G~~ 138 (596)
T PRK14042 80 MLLRGQNLLGYRNYA-----DDVVRAFVKLAVNNGVDVFRVFDALN----------------DARNLKVAIDAIKSHKKH 138 (596)
T ss_pred EEeccccccccccCC-----hHHHHHHHHHHHHcCCCEEEEcccCc----------------chHHHHHHHHHHHHcCCE
Confidence 447899985443333 35788899999999999999964321 134445555556666665
Q ss_pred EEEec
Q 015179 131 VILSL 135 (412)
Q Consensus 131 vil~l 135 (412)
+...+
T Consensus 139 ~~~~i 143 (596)
T PRK14042 139 AQGAI 143 (596)
T ss_pred EEEEE
Confidence 55543
No 135
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=64.74 E-value=23 Score=35.55 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccC-----CCC---cccccCCCCCC---hhHHHHHHHHHHHHH-HcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSD-----GGY---RALQVSPGSYN---EDTFKALDFVVAEAR-EYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~-----~~~---~~~~~~~g~~~---~~~l~~ld~~i~~a~-~~Gi~vil~l~ 136 (412)
...|++.|+.+++.|+|+|-+-++.. .+| ..++-+|..+. +..++.+.++|..++ ++||..|.|+.
T Consensus 21 ~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~DvV 98 (423)
T PF14701_consen 21 FSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDVV 98 (423)
T ss_pred HhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEEe
Confidence 45999999999999999999955432 112 11111221121 234678888888874 79999999984
No 136
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=64.27 E-value=50 Score=32.90 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=42.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..++++++|+.+++.|+..+=+-... . ++-..+++..+++.|++.|.++++.+.
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig~--------~-----d~~~~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIGS--------S-----DSWQPDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccc--------C-----CcccHHHHHHHHHHHHhcCCEEEEEec
Confidence 45799999999999999987772211 0 222357899999999999999999885
No 137
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=64.14 E-value=1.3e+02 Score=28.14 Aligned_cols=64 Identities=13% Similarity=0.199 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCC--CCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPG--SYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.+.++.+++.|+..==++ +. ..|.. ....- .+|++.+....++++.++++|+++++.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~-lD-~~~~~-~~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~ 87 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFV-LD-DDYTD-GYGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID 87 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEE-EC-ccccc-CCceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC
Confidence 45688999999999998743332 21 11211 01112 45666777888999999999999999876
No 138
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=63.55 E-value=17 Score=33.54 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+++.++.++.+|...||++... .+-............+.|.++.+.|+++||.+.+..++
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~----~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGK----RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCC----CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 566788899999999999984321 00000000011234467889999999999999998764
No 139
>PLN03244 alpha-amylase; Provisional
Probab=63.48 E-value=1.3e+02 Score=32.89 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHcCCEEEEecc-c--CCcc------CCCch-hhhhhHHhhCCC--CCCcCccCCCHHHHHHHHHHHHH
Q 015179 114 FKALDFVVAEAREYGVYVILSLV-N--NFKE------YGGRP-RYVEWARERGQS--LKNEDDFYTNAVVKQYYKNHVKA 181 (412)
Q Consensus 114 l~~ld~~i~~a~~~Gi~vil~l~-~--~w~~------~gg~~-~~~~w~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~ 181 (412)
.+.|.++|+.|+++||.||||+- + .... ++|.+ .|-... ..|.. .....--+.++++++.+..-++.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~-~~g~~~~WGs~~fnyg~~EVr~FLLsna~y 518 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTG-KRGHHKHWGTRMFKYGDLDVLHFLISNLNW 518 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccC-CCCccCCCCCceecCCCHHHHHHHHHHHHH
Confidence 56788999999999999999973 2 1110 11111 011000 00100 00111223468888888888888
Q ss_pred HHhcccccccccccCCCceEEeeeccCC---------CCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 182 VLTRINSITGVAYKDDPTIFAWELMNEA---------RCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 182 ~v~r~n~~~g~~y~~~p~v~~wel~NEp---------~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
.++.. .+.|-++-.-.+++..+-..+. +... ......+++.+...|++..|+.+.+
T Consensus 519 WleEy-hIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~---d~dAv~fL~laN~~ih~~~P~~itI 583 (872)
T PLN03244 519 WITEY-QIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYV---DKDALMYLILANEILHALHPKIITI 583 (872)
T ss_pred HHHHh-CcCcceeecchhheeeccccccccCCccccccccC---CchHHHHHHHHHHHHHHhCCCeEEE
Confidence 88651 2233222222333333322111 1111 1234668888999999999985554
No 140
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=63.31 E-value=15 Score=33.01 Aligned_cols=45 Identities=11% Similarity=0.210 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
-..+.-++.++++|.++|.+++.. ...+++.+..+-+.|.++|++
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~--------------Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMG--------------GLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecC--------------CcccHHHHHHHHHHHHHcCCc
Confidence 467889999999999999997553 224577788888899999987
No 141
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=63.05 E-value=19 Score=35.62 Aligned_cols=63 Identities=24% Similarity=0.329 Sum_probs=46.8
Q ss_pred EeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEE
Q 015179 53 LNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVI 132 (412)
Q Consensus 53 ~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vi 132 (412)
++|.|+-..-+.+ .+.++..++...+.|++++|+|. .+. | .+.|...++.++++|..+.
T Consensus 84 lRGQNlvGYrhya-----DDvVe~Fv~ka~~nGidvfRiFD-------AlN------D---~RNl~~ai~a~kk~G~h~q 142 (472)
T COG5016 84 LRGQNLVGYRHYA-----DDVVEKFVEKAAENGIDVFRIFD-------ALN------D---VRNLKTAIKAAKKHGAHVQ 142 (472)
T ss_pred HccCccccccCCc-----hHHHHHHHHHHHhcCCcEEEech-------hcc------c---hhHHHHHHHHHHhcCceeE
Confidence 6788874332222 25788899999999999999952 111 1 4568889999999999998
Q ss_pred Eecc
Q 015179 133 LSLV 136 (412)
Q Consensus 133 l~l~ 136 (412)
..+.
T Consensus 143 ~~i~ 146 (472)
T COG5016 143 GTIS 146 (472)
T ss_pred EEEE
Confidence 8875
No 142
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=61.05 E-value=25 Score=37.21 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCEEEeccc-cCCC---CcccccCCCC-------CCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAF-SDGG---YRALQVSPGS-------YNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~-~~~~---~~~~~~~~g~-------~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+...+.++++|++.|=+-.+ ..|+ |..-....+. +++ ..++.++++++.|+++||+||+||-
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34577889999999888433 2111 1000000111 222 2478999999999999999999983
No 143
>PLN02429 triosephosphate isomerase
Probab=60.61 E-value=92 Score=30.01 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=28.6
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.|++.|++.|=+ .+++. ...|++. -+.+.+=+..|.++||.+|+++-.
T Consensus 140 a~mLkd~Gv~~Vii-GHSER--------R~~f~Et-d~~V~~Kv~~al~~GL~pIvCIGE 189 (315)
T PLN02429 140 VEQLKDLGCKWVIL-GHSER--------RHVIGEK-DEFIGKKAAYALSEGLGVIACIGE 189 (315)
T ss_pred HHHHHHcCCCEEEe-Ccccc--------CCCCCcC-HHHHHHHHHHHHHCcCEEEEEcCC
Confidence 45667777777766 44421 1112221 122333344499999999999863
No 144
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=59.43 E-value=50 Score=27.38 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhc
Q 015179 112 DTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 112 ~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 185 (412)
.-++.+.-+|+.|++.|+.|++.+.. ....|..-.|. +.+.++.+.+-++.++++
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~P---------vNg~wydytG~----------~~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQP---------VNGKWYDYTGL----------SKEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE-------------HHHHHHTT------------HHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecC---------CcHHHHHHhCC----------CHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999998852 12367654443 477788888888888887
No 145
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=59.28 E-value=69 Score=31.21 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=44.7
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++++...+..+.+|+.|.+.+|...|-.. .+|..|..-.-+.+..+.+.|++.||.++-++++
T Consensus 104 Es~e~~~~~A~~lk~~ga~~~r~~~fKpR------Tsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d 166 (335)
T PRK08673 104 ESEEQILEIARAVKEAGAQILRGGAFKPR------TSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMD 166 (335)
T ss_pred CCHHHHHHHHHHHHHhchhhccCcEecCC------CCCcccccccHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 35678888889999999999999666421 1122222222445667777899999999999985
No 146
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=59.02 E-value=33 Score=34.87 Aligned_cols=69 Identities=22% Similarity=0.296 Sum_probs=48.5
Q ss_pred CCEEEE--EeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHH
Q 015179 47 NGKPLY--LNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEA 124 (412)
Q Consensus 47 dG~~~~--~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a 124 (412)
.+.++. .+|.|.......+ .+..+++++.+.+.|+..||++... ++ ...+...++.+
T Consensus 74 ~~~~l~~l~r~~N~~G~~~~p-----ddvv~~~v~~A~~~Gvd~irif~~l--------------nd--~~n~~~~v~~a 132 (448)
T PRK12331 74 KKTKLQMLLRGQNLLGYRNYA-----DDVVESFVQKSVENGIDIIRIFDAL--------------ND--VRNLETAVKAT 132 (448)
T ss_pred CCCEEEEEeccccccccccCc-----hhhHHHHHHHHHHCCCCEEEEEEec--------------Cc--HHHHHHHHHHH
Confidence 445555 6788875443333 2467889999999999999995322 11 23577899999
Q ss_pred HHcCCEEEEecc
Q 015179 125 REYGVYVILSLV 136 (412)
Q Consensus 125 ~~~Gi~vil~l~ 136 (412)
+++|+.+.+.+.
T Consensus 133 k~~G~~v~~~i~ 144 (448)
T PRK12331 133 KKAGGHAQVAIS 144 (448)
T ss_pred HHcCCeEEEEEE
Confidence 999999876664
No 147
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=58.90 E-value=16 Score=34.21 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.+.+.++.++++|++.|+++... ++. .. ....-....+.+.++.+.|+++||++.+..+
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~---~~~-~~-~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~ 144 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGS---YLG-QS-KEEGLKRVIEALNELIDKAETKGVVIALETM 144 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCC---CCC-CC-HHHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 4567888999999999999996432 110 00 0001134457888999999999999999876
No 148
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=58.56 E-value=39 Score=34.49 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=46.4
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
..++|.|.-.....+ .+.++..++..++.|+..+|++... + ..+.+...++.+++.|..
T Consensus 89 mLlRG~n~vgy~~yp-----ddvv~~fv~~a~~~Gidi~Rifd~l--------------n--d~~n~~~ai~~ak~~G~~ 147 (468)
T PRK12581 89 MLLRGQNLLGYRHYA-----DDIVDKFISLSAQNGIDVFRIFDAL--------------N--DPRNIQQALRAVKKTGKE 147 (468)
T ss_pred eeeccccccCccCCc-----chHHHHHHHHHHHCCCCEEEEcccC--------------C--CHHHHHHHHHHHHHcCCE
Confidence 346888863332222 2467778999999999999995432 1 266788899999999999
Q ss_pred EEEecc
Q 015179 131 VILSLV 136 (412)
Q Consensus 131 vil~l~ 136 (412)
+.+.+.
T Consensus 148 ~~~~i~ 153 (468)
T PRK12581 148 AQLCIA 153 (468)
T ss_pred EEEEEE
Confidence 877664
No 149
>PRK05434 phosphoglyceromutase; Provisional
Probab=58.47 E-value=1.3e+02 Score=31.25 Aligned_cols=77 Identities=27% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE 126 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~ 126 (412)
+|+.+.+.|.--- +.-.++.+.+.+.++.+++.|++-|++|.|.||... -....+..++++.+.+++
T Consensus 108 ~~~~lHl~GL~Sd-----ggVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~--------~p~s~~~~i~~l~~~~~~ 174 (507)
T PRK05434 108 NGGALHLMGLLSD-----GGVHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDT--------PPKSALGYLEELEAKLAE 174 (507)
T ss_pred cCCeEEEEEeccC-----CCcccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCC--------CchhHHHHHHHHHHHHHH
Confidence 4566777775321 111123567888999999999999999988877421 134567888888888889
Q ss_pred cCCEEEEecc
Q 015179 127 YGVYVILSLV 136 (412)
Q Consensus 127 ~Gi~vil~l~ 136 (412)
+|.--|.++.
T Consensus 175 ~~~~~iasv~ 184 (507)
T PRK05434 175 LGVGRIASVS 184 (507)
T ss_pred hCCeeEEEEe
Confidence 8987777765
No 150
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=58.10 E-value=1.6e+02 Score=27.28 Aligned_cols=50 Identities=20% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.|+++|++.|=+ .+++.. ..|++ .-+.+.+-+..|.++||.+++++-.
T Consensus 77 ~~mL~d~G~~~vii-GHSERR--------~~f~E-t~~~i~~Kv~~a~~~gl~pIvCiGE 126 (242)
T cd00311 77 AEMLKDAGAKYVII-GHSERR--------QYFGE-TDEDVAKKVKAALEAGLTPILCVGE 126 (242)
T ss_pred HHHHHHcCCCEEEe-Cccccc--------CcCCC-CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67889999999988 665321 11222 2456778888999999999999863
No 151
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=57.92 E-value=27 Score=32.32 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.+++.++.++.+|...|++..... . .... +...-+...+.+.++.+.|+++||.+.+..++
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~-~-~~~~--~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n 146 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKT-P-AGFS--SEQIHATLVENLRYAANMLMKEDILLLIEPIN 146 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCC-C-CCCC--HHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34578899999999999999842110 0 0000 00111233467788899999999999998764
No 152
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=57.18 E-value=65 Score=29.56 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCC--CHHHHHHHHHHHHHHHhcccc
Q 015179 111 EDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYT--NAVVKQYYKNHVKAVLTRINS 188 (412)
Q Consensus 111 ~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~v~r~n~ 188 (412)
+..++-|.+.|.+|.+.||++|--- |++. +|. |++.++.|.+-++..++
T Consensus 92 ~~aleiM~KaI~LA~dLGIRtIQLA--------GYDV-----------------YYE~~d~eT~~rFi~g~~~a~~---- 142 (287)
T COG3623 92 QQALEIMEKAIQLAQDLGIRTIQLA--------GYDV-----------------YYEEADEETRQRFIEGLKWAVE---- 142 (287)
T ss_pred HHHHHHHHHHHHHHHHhCceeEeec--------ccee-----------------eeccCCHHHHHHHHHHHHHHHH----
Confidence 4678899999999999999987632 2221 122 57888888888777766
Q ss_pred cccccccC-CCceEEeeeccCCCC
Q 015179 189 ITGVAYKD-DPTIFAWELMNEARC 211 (412)
Q Consensus 189 ~~g~~y~~-~p~v~~wel~NEp~~ 211 (412)
.+. .-..++.|++.-|..
T Consensus 143 -----lA~~aqV~lAvEiMDtpfm 161 (287)
T COG3623 143 -----LAARAQVMLAVEIMDTPFM 161 (287)
T ss_pred -----HHHhhccEEEeeecccHHH
Confidence 332 235678999977743
No 153
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=55.97 E-value=1.7e+02 Score=26.95 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccc
Q 015179 114 FKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVA 193 (412)
Q Consensus 114 l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~ 193 (412)
.+.....+..++++|++|++.+... . .+ .+ . ....+++.++.|.+.+..++++
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~-~-~~-----------~~--~----~~~~~~~~~~~fa~~l~~~v~~-------- 102 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGN-H-LG-----------AG--F----ANNLSDAAAKAYAKAIVDTVDK-------- 102 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCC-C-CC-----------CC--c----cccCCHHHHHHHHHHHHHHHHH--------
Confidence 4566778888999999999998631 0 00 00 0 0123466677777777777776
Q ss_pred ccCCCceEEeeeccCCCCCC-CCChhHHHHHHHHHHHHHHhcCC-CCeEEec
Q 015179 194 YKDDPTIFAWELMNEARCPT-DPSGTLLQEWIKEMAAHVKSIDN-HHLLEVG 243 (412)
Q Consensus 194 y~~~p~v~~wel~NEp~~~~-~~~~~~~~~~~~~~~~~Ir~~dp-~~lV~~g 243 (412)
|+=+---+-||-.+...... ....+.+..+++++.+.+ +| +.++++.
T Consensus 103 yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~---~~~~kllt~~ 151 (255)
T cd06542 103 YGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYM---GPTDKLLTID 151 (255)
T ss_pred hCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHh---CcCCcEEEEE
Confidence 65443334455544321110 012233444444444443 34 5666654
No 154
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=55.86 E-value=51 Score=35.33 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecccc---CCCCcccccCCC---CCChhHHHHHHHHHHHHHHcCCEEEEecccCC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFS---DGGYRALQVSPG---SYNEDTFKALDFVVAEAREYGVYVILSLVNNF 139 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~---~~~~~~~~~~~g---~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w 139 (412)
..+..++.|+.|++.|+++|-+--+. .+.- .+ +.+- +||....+.+..++..++++|+...+-+...|
T Consensus 70 spe~Fe~qL~~Lk~nGY~~ISl~el~~~~~g~~-~L-P~K~VaLTFDDGy~s~yt~A~PILkkygvpATfFlvg~w 143 (671)
T PRK14582 70 RTSALREQFAWLRENGYQPVSVAQILEAHRGGK-PL-PEKAVLLTFDDGYSSFYTRVFPILQAFQWPAVWAPVGSW 143 (671)
T ss_pred CHHHHHHHHHHHHHCcCEEccHHHHHHHHhcCC-CC-CCCeEEEEEEcCCCchHHHHHHHHHHcCCCEEEEEechh
Confidence 35789999999999999999983221 1110 11 1111 25555555667899999999999876544333
No 155
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=55.85 E-value=45 Score=31.93 Aligned_cols=90 Identities=18% Similarity=0.313 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCC
Q 015179 118 DFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDD 197 (412)
Q Consensus 118 d~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~ 197 (412)
.+++..|+++|+++++.+.. |.. ++... . ....+..+++.++.|.+-+..++++ |+=+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~-~~~-~~~~~--~----------~~~~~l~~~~~r~~fi~~iv~~l~~--------~~~D 105 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITN-LTN-GNFDS--E----------LAHAVLSNPEARQRLINNILALAKK--------YGYD 105 (313)
T ss_pred HHHHHHHHHCCCeEEEEEec-CCC-CCCCH--H----------HHHHHhcCHHHHHHHHHHHHHHHHH--------hCCC
Confidence 47899999999999999864 110 11100 0 0112445788888888888888887 6555
Q ss_pred CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcC
Q 015179 198 PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSID 235 (412)
Q Consensus 198 p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~d 235 (412)
--.+-||-. .. .+.+.+..+++++..++++..
T Consensus 106 GidiDwE~~----~~--~d~~~~~~fl~~lr~~l~~~~ 137 (313)
T cd02874 106 GVNIDFENV----PP--EDREAYTQFLRELSDRLHPAG 137 (313)
T ss_pred cEEEecccC----CH--HHHHHHHHHHHHHHHHhhhcC
Confidence 434445432 11 134568888888888887643
No 156
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=55.52 E-value=24 Score=33.47 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC--C--CCcc---cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD--G--GYRA---LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~--~--~~~~---~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+....++.|+.+++.|+|.+=+ .+-+ | .|+. +...-+..+ -|..+..+|..|+++|||+|..+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~Vi-D~Kdd~G~lty~s~d~~~~~~~sv~--~f~Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVI-DVKDDYGELTYPSSDEINKYTKSVN--KFKDIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEE-EecCCCccEeccccchhhhhhhccc--cccccHHHHHHHHhcCeEEEEEE
Confidence 3567899999999999999887 3321 1 1211 111112122 27788999999999999999876
No 157
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=54.07 E-value=65 Score=29.95 Aligned_cols=63 Identities=17% Similarity=0.317 Sum_probs=47.5
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++++.+.+.-+.++++|++.+|=-.|.+. .+|+.|..-..+.+..+.+.|++.||.++-++++
T Consensus 26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpR------ts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d 88 (250)
T PRK13397 26 ESYDHIRLAASSAKKLGYNYFRGGAYKPR------TSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMS 88 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccCCC------CCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 45677888888899999999999444321 2344444444678889999999999999999985
No 158
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=53.74 E-value=11 Score=26.23 Aligned_cols=10 Identities=20% Similarity=0.447 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 015179 6 LFNSFIFLAL 15 (412)
Q Consensus 6 ~~~~~~~~~~ 15 (412)
.++.|+|++|
T Consensus 6 ~vialLC~aL 15 (65)
T PF10731_consen 6 IVIALLCVAL 15 (65)
T ss_pred hHHHHHHHHH
Confidence 3344555555
No 159
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=53.23 E-value=1.1e+02 Score=30.19 Aligned_cols=62 Identities=27% Similarity=0.380 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...+..+.+++.|++.+|--.|.. -.+|+.|..-.++.+..+-+.|++.||.++-++++
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kp------Rtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d 191 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKP------RTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVN 191 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCC------CCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCC
Confidence 456788888889999999999733321 11233333333577788888999999999999985
No 160
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=52.96 E-value=78 Score=30.05 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccc------c--CCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQ------V--SPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~------~--~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+++.+.++.+++.|+..==++. |.+|.... . ..-.+|++.+....++++.+++.|+++++.++.
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~l--D~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVI--DMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEE--ecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 356889999999999986433321 12221100 0 012456777778889999999999999998863
No 161
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=52.71 E-value=2e+02 Score=26.81 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=34.6
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.+++.|++.|=+ .+++.. -.+++ .=+.+.+-+..|.++||.++++.-.
T Consensus 81 ~~mL~d~G~~~vii-GHSERR--------~~~~E-~d~~i~~K~~aa~~~Gl~pIlCvGE 130 (251)
T COG0149 81 AEMLKDLGAKYVLI-GHSERR--------LYFGE-TDELIAKKVKAAKEAGLTPILCVGE 130 (251)
T ss_pred HHHHHHcCCCEEEE-Cccccc--------ccccc-chHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57789999999988 665321 01111 1124557888999999999999863
No 162
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=52.51 E-value=1e+02 Score=31.99 Aligned_cols=84 Identities=14% Similarity=0.249 Sum_probs=54.1
Q ss_pred ECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCC-CcccccCCCCCChhHHHHHHHHHHHH
Q 015179 46 VNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGG-YRALQVSPGSYNEDTFKALDFVVAEA 124 (412)
Q Consensus 46 ~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~-~~~~~~~~g~~~~~~l~~ld~~i~~a 124 (412)
.+|+.-++-||-.+..+. |+..+.-...|++++++|+++. .+...+ |.+-.-...-|+-+-.+.+-.+|+.|
T Consensus 11 A~g~r~fiCGVvEGFYGR----PWt~EQRK~LFrrl~~~gl~tY---lYAPKDDyKHR~~WRElY~vEEa~~L~~Li~aA 83 (891)
T KOG3698|consen 11 AVGNRKFICGVVEGFYGR----PWTPEQRKHLFRRLNQLGLTTY---LYAPKDDYKHRSLWRELYNVEEATYLRNLIEAA 83 (891)
T ss_pred ccccceeEEEeeccccCC----CCCHHHHHHHHHHHHhccccee---eecccchhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 467777888886533222 3445677889999999999943 332110 11000000125556678889999999
Q ss_pred HHcCCEEEEecc
Q 015179 125 REYGVYVILSLV 136 (412)
Q Consensus 125 ~~~Gi~vil~l~ 136 (412)
+++||..+-.+.
T Consensus 84 ke~~i~F~YAiS 95 (891)
T KOG3698|consen 84 KENNINFVYAIS 95 (891)
T ss_pred HhcCceEEEEcC
Confidence 999999887764
No 163
>PLN02561 triosephosphate isomerase
Probab=52.18 E-value=2e+02 Score=26.78 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+.|+++|++.+=+ .+++. ...|++. -+.+.+-+..|.++||.+|+++-.
T Consensus 81 ~~mL~d~G~~~vii-GHSER--------R~~f~Et-d~~v~~Kv~~al~~gl~pIvCvGE 130 (253)
T PLN02561 81 AEMLVNLGIPWVIL-GHSER--------RALLGES-NEFVGDKVAYALSQGLKVIACVGE 130 (253)
T ss_pred HHHHHHcCCCEEEE-Ccccc--------cCccCCC-hHHHHHHHHHHHHCcCEEEEEcCC
Confidence 67889999999988 66532 1122322 345667788899999999999863
No 164
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=51.97 E-value=1.8e+02 Score=30.09 Aligned_cols=77 Identities=23% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE 126 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~ 126 (412)
+|+.+.+.|.--- +.-.++.+.+...++.+++.|++-|++|.|.||... -.......++++.+.+++
T Consensus 104 ~~~~lHl~GL~Sd-----GgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~--------~p~s~~~~~~~l~~~~~~ 170 (501)
T TIGR01307 104 NNGKLHLMGLVSD-----GGVHSHIDHLIALIELAAERGIEKVVLHAFTDGRDT--------APKSAESYLEQLQAFLKE 170 (501)
T ss_pred cCCceEEEEeccC-----CCCcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCC--------CchhHHHHHHHHHHHHHH
Confidence 3556666665321 111124568889999999999999999988877421 134567788888888888
Q ss_pred cCCEEEEecc
Q 015179 127 YGVYVILSLV 136 (412)
Q Consensus 127 ~Gi~vil~l~ 136 (412)
.|..-|.++.
T Consensus 171 ~~~~~iasv~ 180 (501)
T TIGR01307 171 IGNGRIATIS 180 (501)
T ss_pred hCCEEEEEEe
Confidence 7877777775
No 165
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.94 E-value=45 Score=35.23 Aligned_cols=63 Identities=25% Similarity=0.288 Sum_probs=43.5
Q ss_pred EEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 015179 52 YLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYV 131 (412)
Q Consensus 52 ~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~v 131 (412)
.++|.|...+...+ .+.++.+++..++.|+..+|++... + .++.+...++.|+++|..+
T Consensus 82 l~Rg~n~vg~~~yp-----ddvv~~~v~~a~~~Gid~~rifd~l--------------n--d~~~~~~ai~~ak~~G~~~ 140 (593)
T PRK14040 82 LLRGQNLLGYRHYA-----DDVVERFVERAVKNGMDVFRVFDAM--------------N--DPRNLETALKAVRKVGAHA 140 (593)
T ss_pred EecCcceeccccCc-----HHHHHHHHHHHHhcCCCEEEEeeeC--------------C--cHHHHHHHHHHHHHcCCeE
Confidence 46888874432222 2467889999999999999995311 1 1467778888888888876
Q ss_pred EEec
Q 015179 132 ILSL 135 (412)
Q Consensus 132 il~l 135 (412)
...+
T Consensus 141 ~~~i 144 (593)
T PRK14040 141 QGTL 144 (593)
T ss_pred EEEE
Confidence 5443
No 166
>COG3661 AguA Alpha-glucuronidase [Carbohydrate transport and metabolism]
Probab=51.81 E-value=1.4e+02 Score=29.95 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.+.+..+.+++.|+|.+=+...+ . -+.+....+.-++.++.++-+..+.+||++.+++.
T Consensus 182 ~qR~kDYAR~laSiGINg~v~NNVN-v----k~~e~~lit~~fl~k~aklAdiFR~YGIK~yLsin 242 (684)
T COG3661 182 DQRMKDYARALASIGINGTVLNNVN-V----KKAESYLITAPFLAKAAKLADIFRPYGIKVYLSIN 242 (684)
T ss_pred hHHHHHHHHHHhhcCcceEEecccc-c----chhhhheechHhHHHHHHHHHHhhhccceEEEEec
Confidence 3678888999999999988773221 0 01111224556789999999999999999999985
No 167
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=50.46 E-value=2.1e+02 Score=26.46 Aligned_cols=131 Identities=10% Similarity=0.061 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCc-ccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhh
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYR-ALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEW 151 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~-~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w 151 (412)
..++.-+.+++.|+..+=+....++ ++ .+...+.....+.++.+++.++.|++.|...++.... ..+..
T Consensus 48 ~~~~l~~~~~~~gl~v~s~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~----~~~~~----- 117 (275)
T PRK09856 48 GIKQIKALAQTYQMPIIGYTPETNG-YPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAA----HAGYL----- 117 (275)
T ss_pred HHHHHHHHHHHcCCeEEEecCcccC-cCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCC----CCCCC-----
Confidence 4445555666778876544222111 10 0000000112356789999999999999998865321 00100
Q ss_pred HHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHH
Q 015179 152 ARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHV 231 (412)
Q Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~I 231 (412)
.+..+..+.+.+.++.+++. -+.+.-.+++|..+...... ..=..++...+
T Consensus 118 --------------~~~~~~~~~~~~~l~~l~~~--------a~~~gv~l~iE~~~~~~~~~-------~~t~~~~~~l~ 168 (275)
T PRK09856 118 --------------TPPNVIWGRLAENLSELCEY--------AENIGMDLILEPLTPYESNV-------VCNANDVLHAL 168 (275)
T ss_pred --------------CCHHHHHHHHHHHHHHHHHH--------HHHcCCEEEEecCCCCcccc-------cCCHHHHHHHH
Confidence 01244556666777777764 33444456677554221110 01135566677
Q ss_pred HhcC-CCCeEEe
Q 015179 232 KSID-NHHLLEV 242 (412)
Q Consensus 232 r~~d-p~~lV~~ 242 (412)
++++ |+.-+.+
T Consensus 169 ~~~~~~~v~~~~ 180 (275)
T PRK09856 169 ALVPSPRLFSMV 180 (275)
T ss_pred HHcCCCcceeEE
Confidence 7776 4544444
No 168
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=50.42 E-value=46 Score=34.78 Aligned_cols=66 Identities=14% Similarity=0.240 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCC----CC-----ChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPG----SY-----NEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g----~~-----~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+.+..++.|+.|+++.+|.+.++.+...+-.++....+ .| .+-..+.+...|+.|+++||++|.--
T Consensus 116 ~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Yn 190 (559)
T PF13199_consen 116 SAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYN 190 (559)
T ss_dssp GHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhH
Confidence 35789999999999999999996543111112211111 12 13356789999999999999999874
No 169
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=50.26 E-value=32 Score=32.22 Aligned_cols=59 Identities=15% Similarity=0.029 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCEEEecc-ccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWA-FSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~-~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++++.+.+.|+..||++. .++. ..+.+-+.-.++.++.+.+++..|+++|+.|.+.+.+
T Consensus 75 ~di~~a~~~g~~~i~i~~~~S~~---~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~ed 134 (262)
T cd07948 75 DDARIAVETGVDGVDLVFGTSPF---LREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSED 134 (262)
T ss_pred HHHHHHHHcCcCEEEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 468888899999999943 1110 1111112213566888999999999999999998864
No 170
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=49.83 E-value=30 Score=36.16 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCC--Cccc-ccCCCCCCh--hHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGG--YRAL-QVSPGSYNE--DTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~--~~~~-~~~~g~~~~--~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-+..-++.++++|++++=+-++..-. +..+ .......++ ..++.+..+++.+++.||++|+++.
T Consensus 41 GI~~kldyi~~lG~taiWisP~~~s~~~~~GY~~~d~~~l~p~fGt~edf~~Li~~~h~~gi~ii~D~v 109 (545)
T KOG0471|consen 41 GITSKLDYIKELGFTAIWLSPFTKSSKPDFGYDASDLEQLRPRFGTEEDFKELILAMHKLGIKIIADLV 109 (545)
T ss_pred cchhhhhHHHhcCCceEEeCCCcCCCHHHhccCccchhhhcccccHHHHHHHHHHHHhhcceEEEEeec
Confidence 34556999999999998885443110 0000 011112232 3478899999999999999999983
No 171
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=48.97 E-value=25 Score=31.18 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=12.2
Q ss_pred CChhHHHHHHHHHHHHHHc
Q 015179 109 YNEDTFKALDFVVAEAREY 127 (412)
Q Consensus 109 ~~~~~l~~ld~~i~~a~~~ 127 (412)
-+++..+++.+-++...+.
T Consensus 91 snp~l~~~v~~r~~~~~~~ 109 (193)
T PRK00315 91 SNPALDDAIKARVAALRAA 109 (193)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4677777777777664443
No 172
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=48.72 E-value=2.5e+02 Score=26.93 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYV 149 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~ 149 (412)
+.+++.+.++.+++.++..==+|. |..|-. ....-.+|++.+....++++.++++|+++++.++..-......+.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~ 98 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFL--DIHYMD-SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFL 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEE--ChhhhC-CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHH
Confidence 356789999999999986544422 111210 00122456777777889999999999999998763211000011111
Q ss_pred hhHHh--------hCCCC------C-CcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCC
Q 015179 150 EWARE--------RGQSL------K-NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTD 214 (412)
Q Consensus 150 ~w~~~--------~g~~~------~-~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~ 214 (412)
. ..+ .|.+. . ..-.=+++|++++.+.+.++.+... .+-+ .-|.=+|||....+
T Consensus 99 ~-~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~--------~gvd---g~w~D~~Ep~~~~~ 166 (317)
T cd06600 99 S-GMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNS--------QGVD---GIWLDMNEPSDFEK 166 (317)
T ss_pred H-HHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhc--------CCCc---eEEeeCCCCccHHH
Confidence 0 000 01100 0 0111245799999988888876542 2221 23555899864210
Q ss_pred CChhHH-HHHHHHHHHHHHhcCC-CCeEEec
Q 015179 215 PSGTLL-QEWIKEMAAHVKSIDN-HHLLEVG 243 (412)
Q Consensus 215 ~~~~~~-~~~~~~~~~~Ir~~dp-~~lV~~g 243 (412)
. ...+ ..+.+...+.+++..| .+++++.
T Consensus 167 ~-hn~y~~~~~~a~~~~~~~~~~~~r~~~~s 196 (317)
T cd06600 167 V-HNLYGLYEAMATAEGFRTSHPRNRIFILT 196 (317)
T ss_pred h-cchhhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 0 0011 2345566677777664 4455544
No 173
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=48.53 E-value=63 Score=33.29 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=46.8
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
..++|.|.......+ .+.++.+++...+.|+..+|++... + .++.+...++.+++.|..
T Consensus 81 mL~Rg~N~vGy~~y~-----ddvv~~fv~~a~~~Gidi~RIfd~l--------------n--dv~nl~~ai~~vk~ag~~ 139 (499)
T PRK12330 81 MLLRGQNLLGYRHYE-----DEVVDRFVEKSAENGMDVFRVFDAL--------------N--DPRNLEHAMKAVKKVGKH 139 (499)
T ss_pred EEEcccccCCccCcc-----hhHHHHHHHHHHHcCCCEEEEEecC--------------C--hHHHHHHHHHHHHHhCCe
Confidence 446888875443322 2478899999999999999995321 1 257788899999999998
Q ss_pred EEEec
Q 015179 131 VILSL 135 (412)
Q Consensus 131 vil~l 135 (412)
+...+
T Consensus 140 ~~~~i 144 (499)
T PRK12330 140 AQGTI 144 (499)
T ss_pred EEEEE
Confidence 86665
No 174
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=47.02 E-value=77 Score=33.82 Aligned_cols=37 Identities=27% Similarity=0.656 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHHhcccccccccccCC-CceEEeeeccCCCCCCC
Q 015179 168 NAVVKQYYKNHVKAVLTRINSITGVAYKDD-PTIFAWELMNEARCPTD 214 (412)
Q Consensus 168 ~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~-p~v~~wel~NEp~~~~~ 214 (412)
+|++++.+..... ..| |... |++..|.=+|||.....
T Consensus 479 nP~~r~wW~~~fa--fd~--------y~g~t~nl~iWNDMNEPSVFnG 516 (915)
T KOG1066|consen 479 NPEARKWWKSQFA--FDR--------YEGSTPNLFIWNDMNEPSVFNG 516 (915)
T ss_pred CHHHHHHHhhhcc--ccc--------ccCCCCceEEeccCCCccccCC
Confidence 5888887776665 445 7654 67999999999987643
No 175
>PTZ00333 triosephosphate isomerase; Provisional
Probab=46.89 E-value=2.5e+02 Score=26.24 Aligned_cols=50 Identities=24% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
...|+++|++.+=+ .+++.. ..|.+ .-+.+.+-+..|.++||.+++++-.
T Consensus 82 ~~mL~d~G~~~vii-GHSERR--------~~f~E-td~~I~~Kv~~al~~gl~pIlCvGE 131 (255)
T PTZ00333 82 AEMLKDLGINWTIL-GHSERR--------QYFGE-TNEIVAQKVKNALENGLKVILCIGE 131 (255)
T ss_pred HHHHHHcCCCEEEE-Cccccc--------CcCCC-CcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 57889999999988 665321 11221 1246677888999999999999863
No 176
>PRK01060 endonuclease IV; Provisional
Probab=46.59 E-value=1.4e+02 Score=27.79 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEE-Eeccc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVI-LSLVN 137 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vi-l~l~~ 137 (412)
.+++.++.++++|++.|-++.-....| ....+++ +.++++-++++++||.+. +.+|.
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~-----~~~~~~~---~~~~~lk~~~~~~gl~~~~~~~h~ 70 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQW-----KRKPLEE---LNIEAFKAACEKYGISPEDILVHA 70 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCC-----cCCCCCH---HHHHHHHHHHHHcCCCCCceEEec
Confidence 478899999999999999964321111 1222343 345667778899999843 33453
No 177
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=45.78 E-value=1e+02 Score=33.25 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEecc-cc--CCC---CcccccCCCCCChh--HHHHHHHHHHHHHHcCCEEEEecccCCccC
Q 015179 71 KAKVTAAFQQATKYGMNIARTWA-FS--DGG---YRALQVSPGSYNED--TFKALDFVVAEAREYGVYVILSLVNNFKEY 142 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~-~~--~~~---~~~~~~~~g~~~~~--~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~ 142 (412)
.....+.++.++++|+..+=+-+ |. .|+ |.-+ .+.+.||+ ..+-+.+++..+++.||-+|+|+-.+.+..
T Consensus 18 F~~A~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVv--D~t~InPeLGG~egl~rLvaalk~~GlGlI~DIVPNHMav 95 (889)
T COG3280 18 FADARALLDYLADLGISHLYLSPIFTARPGSTHGYDVV--DPTEINPELGGEEGLERLVAALKSRGLGLIVDIVPNHMAV 95 (889)
T ss_pred HHHHHHhhHHHHhcCchheeccchhhcCCCCCCCccCC--CccccChhhcChHHHHHHHHHHHhcCCceEEEecccchhc
Confidence 46788899999999999776622 22 121 2211 12223332 456788999999999999999985433344
Q ss_pred C
Q 015179 143 G 143 (412)
Q Consensus 143 g 143 (412)
+
T Consensus 96 ~ 96 (889)
T COG3280 96 G 96 (889)
T ss_pred c
Confidence 4
No 178
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=44.96 E-value=79 Score=29.83 Aligned_cols=64 Identities=19% Similarity=0.115 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCC--CCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSP--GSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~--g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...+.++.++++|+..|=+ |.+|....... .......-..|.++++.|+++|+.|+|-.|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 5789999999999999998888 22242211100 0011112357899999999999999998874
No 179
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=44.86 E-value=2e+02 Score=27.60 Aligned_cols=98 Identities=15% Similarity=0.289 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHc-CCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccc
Q 015179 116 ALDFVVAEAREY-GVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAY 194 (412)
Q Consensus 116 ~ld~~i~~a~~~-Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y 194 (412)
.+.++..+.+++ |+++++.+.. |.. .. .+ .....+++.++.|.+-+..++++ |
T Consensus 53 ~~~~~~~l~~~~~~~kvl~svgg-~~~---s~---~f-----------~~~~~~~~~r~~fi~~i~~~~~~--------~ 106 (334)
T smart00636 53 NFGQLKALKKKNPGLKVLLSIGG-WTE---SD---NF-----------SSMLSDPASRKKFIDSIVSFLKK--------Y 106 (334)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeC-CCC---Cc---ch-----------hHHHCCHHHHHHHHHHHHHHHHH--------c
Confidence 455566666664 9999998853 110 00 01 12334678888888888888887 5
Q ss_pred cCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhc---CCCCeEEec
Q 015179 195 KDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSI---DNHHLLEVG 243 (412)
Q Consensus 195 ~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~---dp~~lV~~g 243 (412)
.=+--.+-||- |.... .+.+.+..+++++...+++. .++.++++.
T Consensus 107 ~~DGidiDwE~---~~~~~-~d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~ 154 (334)
T smart00636 107 GFDGIDIDWEY---PGARG-DDRENYTALLKELREALDKEGAEGKGYLLTIA 154 (334)
T ss_pred CCCeEEECCcC---CCCCc-cHHHHHHHHHHHHHHHHHHhcccCCceEEEEE
Confidence 54432233432 22210 13456888888888888765 456666654
No 180
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=44.85 E-value=1.2e+02 Score=27.53 Aligned_cols=121 Identities=12% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHcCCCEEEecc---ccCCCCcc-cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 72 AKVTAAFQQATKYGMNIARTWA---FSDGGYRA-LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~---~~~~~~~~-~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
-.++..|+.++.+||..|.-++ +-||..+. +|.. | + .+..=-.+|..|+++++.....+.+
T Consensus 101 ~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEet-G-m---G~~~Evemlr~A~~k~l~t~~yV~s---------- 165 (276)
T COG5564 101 CRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEET-G-M---GYGLEVEMLREAHAKDLLTTPYVFS---------- 165 (276)
T ss_pred hhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHh-C-c---chHHHHHHHHHHHhccccccceecC----------
Confidence 3678899999999998877644 33443221 1211 1 0 1222235788888888775544432
Q ss_pred hhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHH
Q 015179 148 YVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEM 227 (412)
Q Consensus 148 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~ 227 (412)
-.++++..+.-..-++.| ++|.+..--.....-+-++..++.+..
T Consensus 166 --------------------~~eAqa~~~aGadiiv~h---------------mg~ttgG~Igar~~~Sl~~~vel~~~~ 210 (276)
T COG5564 166 --------------------FEEAQAMTKAGADIIVAH---------------MGLTTGGLIGARSALSLADCVELIELA 210 (276)
T ss_pred --------------------HHHHHHHHHcCcceeeec---------------ccccccceeccccccCHHHHHHHHHHH
Confidence 123333222211112221 334333322221111335677888999
Q ss_pred HHHHHhcCCCCeEEe
Q 015179 228 AAHVKSIDNHHLLEV 242 (412)
Q Consensus 228 ~~~Ir~~dp~~lV~~ 242 (412)
++++|.+..+.++..
T Consensus 211 ~~aar~v~kd~i~l~ 225 (276)
T COG5564 211 AEAARGVRKDVIPLC 225 (276)
T ss_pred HHHHhhhhhceeeec
Confidence 999999888777765
No 181
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=44.80 E-value=84 Score=28.95 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
...++.++.++++||++|-+- +|. +. .+ .+..-++|+.++++|++|+..+.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS---~G~---~~-----i~---~~~~~rlI~~~~~~g~~v~~EvG 121 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEIS---DGS---ME-----IS---LEERCNLIERAKDNGFMVLSEVG 121 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEc---CCc---cC-----CC---HHHHHHHHHHHHhCCCeEecccc
Confidence 578899999999999999882 221 00 12 23445789999999999999886
No 182
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.66 E-value=40 Score=31.40 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++.+.+.|+..||+..... -...+.+-+.-.++.++.+..+++.|+++|+.|.+.+.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 4567888899999999943210 00111111222356788999999999999999887664
No 183
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=43.30 E-value=42 Score=31.77 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+++++.+.+.|++.|++.. +- +....+.+-+.-.++.++.+.++++.|+++|+.|.+.+.+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~-~~-S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLT-KG-SLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred HHHHHHHHHCCCCEEEEEE-eC-CHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 3578899999999999943 20 0001111112224678899999999999999999998864
No 184
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=43.23 E-value=53 Score=31.61 Aligned_cols=94 Identities=17% Similarity=0.277 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCC-CHHHHHHHHHHHHHHHhcccccccccccCC
Q 015179 119 FVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYT-NAVVKQYYKNHVKAVLTRINSITGVAYKDD 197 (412)
Q Consensus 119 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~ 197 (412)
..++.|+++|++|+-++...|. ++ ..|... +.. +++....+.+-+..+++. |+=+
T Consensus 46 ~widaAHrnGV~vLGTiife~~--~~----~~~~~~----------ll~~~~~g~~~~A~kLi~ia~~--------yGFD 101 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWG--GG----AEWCEE----------LLEKDEDGSFPYADKLIEIAKY--------YGFD 101 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--------HHHHHH----------HT---TTS--HHHHHHHHHHHH--------HT--
T ss_pred hhHHHHHhcCceEEEEEEecCC--ch----HHHHHH----------HHcCCcccccHHHHHHHHHHHH--------cCCC
Confidence 4688999999999999875442 11 133322 111 222223345566667776 6655
Q ss_pred CceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 198 PTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 198 p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
+|-|-=|-........+.+..|++++.+..++ .|...|.
T Consensus 102 ----Gw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~~~~~v~ 140 (311)
T PF03644_consen 102 ----GWLINIETPLSGPEDAENLIDFLKYLRKEAHE-NPGSEVI 140 (311)
T ss_dssp ----EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T-T-EEE
T ss_pred ----ceEEEecccCCchhHHHHHHHHHHHHHHHhhc-CCCcEEE
Confidence 45554444432111356799999999999999 7765443
No 185
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=43.02 E-value=67 Score=28.12 Aligned_cols=26 Identities=8% Similarity=0.249 Sum_probs=17.8
Q ss_pred CCCCCCCEEecCCcEEE--CCEEEEEee
Q 015179 30 ANPNQEFAQTNGSHFAV--NGKPLYLNG 55 (412)
Q Consensus 30 ~~~~~~~v~v~g~~l~~--dG~~~~~~G 55 (412)
.+.....++++.+++.. .+....+.|
T Consensus 25 ~~d~~~pI~I~AD~~~~~~~~~~~~~tG 52 (180)
T PRK10894 25 TGDTDQPIHIDSDQQSLDMQGNVVTFTG 52 (180)
T ss_pred ccccCCCEEEEeCceEeeccCCEEEEEe
Confidence 35667789999988873 355556666
No 186
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=42.74 E-value=2.9e+02 Score=25.93 Aligned_cols=63 Identities=21% Similarity=0.281 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++.+.+...-+..++.|.+.+|--.|- + ..+|..|.--..+.+..+-+.++++|+.++-.+-+
T Consensus 56 Es~E~i~~~A~~vk~~Ga~~lRGgafK-----P-RTSPYsFQGlge~gL~~l~~a~~~~Gl~vvtEvm~ 118 (286)
T COG2876 56 ESEEQVRETAESVKAAGAKALRGGAFK-----P-RTSPYSFQGLGEEGLKLLKRAADETGLPVVTEVMD 118 (286)
T ss_pred CCHHHHHHHHHHHHHcchhhccCCcCC-----C-CCCcccccccCHHHHHHHHHHHHHcCCeeEEEecC
Confidence 356788888999999999999994443 1 12233333333467888888999999999998863
No 187
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=42.22 E-value=75 Score=28.06 Aligned_cols=65 Identities=3% Similarity=-0.026 Sum_probs=35.6
Q ss_pred HHhHHHhh--hcCCCCCCCEEecCC-cEEECCEEEEEeeeec-----------ccccccCCCcCcHHHHHHHHHHHHHcC
Q 015179 20 YLNTYIYM--AKANPNQEFAQTNGS-HFAVNGKPLYLNGFNA-----------YWMLYYAGDPSTKAKVTAAFQQATKYG 85 (412)
Q Consensus 20 ~~~~~~~~--~~~~~~~~~v~v~g~-~l~~dG~~~~~~GvN~-----------~~~~~~~~~~~~~~~~~~~l~~l~~~G 85 (412)
++...++| ...+.+.+.|.|++. .|+++|..+-+..++. +|.++++.+ ..-.-.++.|++.|
T Consensus 13 ~~~~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c----~~e~P~l~~l~~~~ 88 (184)
T TIGR01626 13 IFPSSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAK----EXNASLIDAIKAAK 88 (184)
T ss_pred HhHHHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChh----hccchHHHHHHHcC
Confidence 33444444 234556667887774 6777776666555543 333444321 12233567778777
Q ss_pred CCE
Q 015179 86 MNI 88 (412)
Q Consensus 86 ~N~ 88 (412)
|..
T Consensus 89 ~~~ 91 (184)
T TIGR01626 89 FPP 91 (184)
T ss_pred CCc
Confidence 765
No 188
>PF15284 PAGK: Phage-encoded virulence factor
Probab=42.08 E-value=45 Score=23.51 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=6.5
Q ss_pred hhhHHHHHHHHHH
Q 015179 3 VTRLFNSFIFLAL 15 (412)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (412)
|+++.+.|+.+++
T Consensus 1 Mkk~ksifL~l~~ 13 (61)
T PF15284_consen 1 MKKFKSIFLALVF 13 (61)
T ss_pred ChHHHHHHHHHHH
Confidence 3555555544444
No 189
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=42.01 E-value=3.4e+02 Score=26.41 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=83.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHH--HHHHHHHHHcCCEEEEecccCCccC---CC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKAL--DFVVAEAREYGVYVILSLVNNFKEY---GG 144 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~l--d~~i~~a~~~Gi~vil~l~~~w~~~---gg 144 (412)
+.+++.+.++.+++.|+..==+|. |.+|.. .-..-.+|++.+-.. .++++.+++.|+++++.++..-... ..
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~l--D~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~ 98 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWN--DIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGS 98 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEE--Cccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCC
Confidence 356889999999999987544421 211210 001123455566666 8999999999999999886321100 01
Q ss_pred chhhhhhHHh-------hCCC------CC-CcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCC
Q 015179 145 RPRYVEWARE-------RGQS------LK-NEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEAR 210 (412)
Q Consensus 145 ~~~~~~w~~~-------~g~~------~~-~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~ 210 (412)
.+.|..-... .|.+ .. ..-.=|++|++++.+.+..+.+... ++-+ .-|.=+|||.
T Consensus 99 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~--------~Gvd---g~w~D~~Ep~ 167 (339)
T cd06602 99 YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQ--------VPFD---GLWIDMNEPS 167 (339)
T ss_pred CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhc--------CCCc---EEEecCCCCc
Confidence 1111110000 0100 00 0111256899999888888877654 3322 2366689986
Q ss_pred CCCCCChhHH-HHHHHHHHHHHHhcCCCCeEEec
Q 015179 211 CPTDPSGTLL-QEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 211 ~~~~~~~~~~-~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
.... .-..+ ..+.+.+.+.+++...++++++.
T Consensus 168 ~~~~-~hN~y~~~~~~~~~~~~~~~~~~r~~~~s 200 (339)
T cd06602 168 NFYD-VHNLYGLSEAIATYKALQSIPGKRPFVIS 200 (339)
T ss_pred hHhh-hcchhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4210 00111 22445566777776334455543
No 190
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.98 E-value=92 Score=29.12 Aligned_cols=76 Identities=21% Similarity=0.313 Sum_probs=49.7
Q ss_pred CCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH
Q 015179 47 NGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE 126 (412)
Q Consensus 47 dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~ 126 (412)
+|+++++.|-+. .++.+...+..+.+++.|++..|-+.|-+. .+|..|..-.-+.+..+-+.|++
T Consensus 23 ~~~~~~IAGpc~---------ie~~~~~~~~A~~lk~~~~k~~r~~~~KpR------tsp~s~~g~g~~gl~~l~~~~~~ 87 (260)
T TIGR01361 23 EGSPIVIAGPCS---------VESEEQIMETARFVKEAGAKILRGGAFKPR------TSPYSFQGLGEEGLKLLRRAADE 87 (260)
T ss_pred CCcEEEEEeCCc---------cCCHHHHHHHHHHHHHHHHHhccCceecCC------CCCccccccHHHHHHHHHHHHHH
Confidence 456666666221 234567788888899999998887544311 11222222234566777778999
Q ss_pred cCCEEEEeccc
Q 015179 127 YGVYVILSLVN 137 (412)
Q Consensus 127 ~Gi~vil~l~~ 137 (412)
.||.++-++++
T Consensus 88 ~Gl~~~t~~~d 98 (260)
T TIGR01361 88 HGLPVVTEVMD 98 (260)
T ss_pred hCCCEEEeeCC
Confidence 99999999985
No 191
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=41.72 E-value=61 Score=30.01 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..+++.++.++++||++|-+- +|.- . .+ .+..-++|..+++.|++|+..+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiS---dGti---~-----l~---~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEIS---DGTI---D-----LP---EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE-----SSS--------------HHHHHHHHHHHCCTTSEEEEEES
T ss_pred ChHHHHHHHHHHcCCCEEEec---CCce---e-----CC---HHHHHHHHHHHHHCCCEEeeccc
Confidence 378999999999999999882 2210 0 11 23445789999999999999986
No 192
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=41.70 E-value=62 Score=29.54 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=44.5
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
++++|-++.+... +...+++|++..+++|+.-|=+ ... ...|..| ...+.+++++|.-.+
T Consensus 58 IRPRgGdFvY~~~------E~~iM~~DI~~~~~lG~~GVV~-G~l--------t~dg~iD---~~~le~Li~aA~gL~-- 117 (241)
T COG3142 58 IRPRGGDFVYSDD------ELEIMLEDIRLARELGVQGVVL-GAL--------TADGNID---MPRLEKLIEAAGGLG-- 117 (241)
T ss_pred EecCCCCcccChH------HHHHHHHHHHHHHHcCCCcEEE-eee--------cCCCccC---HHHHHHHHHHccCCc--
Confidence 4678877655321 3568999999999999998877 221 2345566 677888888887444
Q ss_pred EEEeccc
Q 015179 131 VILSLVN 137 (412)
Q Consensus 131 vil~l~~ 137 (412)
+++|.
T Consensus 118 --vTFHr 122 (241)
T COG3142 118 --VTFHR 122 (241)
T ss_pred --eeeeh
Confidence 35664
No 193
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=41.54 E-value=84 Score=29.57 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+..+.+++...+.|+..||++... + .++.+...++.++++|+.+.+.+.
T Consensus 91 ~~~~~di~~~~~~g~~~iri~~~~--------------~--~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 91 DVVELFVEKAAKNGIDIFRIFDAL--------------N--DVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecC--------------C--hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 357889999999999999994321 1 177888999999999999887664
No 194
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=41.47 E-value=98 Score=32.74 Aligned_cols=69 Identities=20% Similarity=0.303 Sum_probs=48.0
Q ss_pred CCEEEEE--eeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHH
Q 015179 47 NGKPLYL--NGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEA 124 (412)
Q Consensus 47 dG~~~~~--~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a 124 (412)
.+.++.. +|.|.-.....+ .+..+.+++.+.+.|+..+|++... + .++.+...++.+
T Consensus 74 ~~~~l~~l~Rg~N~~gy~~yp-----d~vv~~~v~~A~~~Gvd~irif~~l--------------n--d~~n~~~~i~~a 132 (592)
T PRK09282 74 PNTPLQMLLRGQNLVGYRHYP-----DDVVEKFVEKAAENGIDIFRIFDAL--------------N--DVRNMEVAIKAA 132 (592)
T ss_pred CCCEEEEEecccccccccccc-----chhhHHHHHHHHHCCCCEEEEEEec--------------C--hHHHHHHHHHHH
Confidence 3455443 487874332222 2477889999999999999995321 1 146788889999
Q ss_pred HHcCCEEEEecc
Q 015179 125 REYGVYVILSLV 136 (412)
Q Consensus 125 ~~~Gi~vil~l~ 136 (412)
+++|+.+...+.
T Consensus 133 k~~G~~v~~~i~ 144 (592)
T PRK09282 133 KKAGAHVQGTIS 144 (592)
T ss_pred HHcCCEEEEEEE
Confidence 999999887764
No 195
>PRK12677 xylose isomerase; Provisional
Probab=41.34 E-value=55 Score=32.53 Aligned_cols=65 Identities=17% Similarity=0.188 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcC--CEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYG--VYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~G--i~vil~l~ 136 (412)
+...+.|+..+++|++.|.+|.-.++..-..+......-+...+.|+.+.+.|+++| |++.|+..
T Consensus 114 ~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpk 180 (384)
T PRK12677 114 RKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPK 180 (384)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccC
Confidence 347788899999999999997533221000111000001223356678888888855 99888875
No 196
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=40.95 E-value=72 Score=32.43 Aligned_cols=65 Identities=15% Similarity=0.211 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccc----c---CCCCCChhH---HHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQ----V---SPGSYNEDT---FKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~----~---~~g~~~~~~---l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-..+.+.|+.|+..-+|++-.|+.++.+.| ++ | ..|-|++.. -+++-++|+.|+-+||+|+.++.
T Consensus 197 v~~IkrtLeaMa~nKLNVlHWHivDs~SFP-le~~~~PeL~~kGaYs~~~vYT~eDv~evV~yarlRGIRVlpEfD 271 (542)
T KOG2499|consen 197 VKVIKRTLEAMAANKLNVLHWHIVDSQSFP-LESPTFPELHRKGAYSPRHVYTREDVSEVVEYARLRGIRVLPEFD 271 (542)
T ss_pred HHHHHHHHHHHHhhhhceeEEEeecCCCCc-cccCCchhhhhcCCCCcceeecHHHHHHHHHHHHhccceeeeccc
Confidence 357888999999999999888665543332 21 1 235555432 46788999999999999999985
No 197
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.67 E-value=3.6e+02 Score=27.33 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.|+++|+|.|-+ .+...+ +.+...-+. ....+.+.+.++.+++.|+. |-+++.
T Consensus 151 t~e~l~~L~~~G~~rvsi-GvQS~~-~~vl~~l~R--~~~~~~~~~ai~~lr~~G~~~v~~dli 210 (453)
T PRK13347 151 TAEMLQALAALGFNRASF-GVQDFD-PQVQKAINR--IQPEEMVARAVELLRAAGFESINFDLI 210 (453)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCC-HHHHHHhCC--CCCHHHHHHHHHHHHhcCCCcEEEeEE
Confidence 467899999999996555 322111 111111111 12356778899999999996 667764
No 198
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.34 E-value=99 Score=32.65 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=47.1
Q ss_pred CCEEEEE--eeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHH
Q 015179 47 NGKPLYL--NGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEA 124 (412)
Q Consensus 47 dG~~~~~--~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a 124 (412)
.+.++.. +|.|.-.....+ .+..+.+++.+.+.|+..+|++... ++ .+.+...++.+
T Consensus 69 ~~~~l~~L~Rg~N~~G~~~yp-----ddvv~~~v~~a~~~Gvd~irif~~l--------------nd--~~n~~~~i~~a 127 (582)
T TIGR01108 69 PNTPLQMLLRGQNLLGYRHYA-----DDVVERFVKKAVENGMDVFRIFDAL--------------ND--PRNLQAAIQAA 127 (582)
T ss_pred CCCEEEEEEccccccccccCc-----hhhHHHHHHHHHHCCCCEEEEEEec--------------Cc--HHHHHHHHHHH
Confidence 3445543 477764332222 2467889999999999999995322 11 35688888999
Q ss_pred HHcCCEEEEecc
Q 015179 125 REYGVYVILSLV 136 (412)
Q Consensus 125 ~~~Gi~vil~l~ 136 (412)
+++|+.+...+.
T Consensus 128 k~~G~~v~~~i~ 139 (582)
T TIGR01108 128 KKHGAHAQGTIS 139 (582)
T ss_pred HHcCCEEEEEEE
Confidence 999999887754
No 199
>PRK09936 hypothetical protein; Provisional
Probab=39.23 E-value=3.5e+02 Score=25.79 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..+.|++.++.+++.||+++=+ -+. .+.++ .|... =..|-+.++.|.+.||+|++-|.
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLiv-QWt-----~yG~~--~fg~~-~g~La~~l~~A~~~Gl~v~vGL~ 93 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVV-QWT-----RYGDA--DFGGQ-RGWLAKRLAAAQQAGLKLVVGLY 93 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE-Eee-----eccCC--Ccccc-hHHHHHHHHHHHHcCCEEEEccc
Confidence 4679999999999999999877 221 11111 11111 23577899999999999999997
No 200
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=38.90 E-value=52 Score=30.62 Aligned_cols=53 Identities=9% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
-+++|+.|.+.+.+.++.+.+ .+ +.++..+..+.++...|.+++|-.++++..
T Consensus 117 a~riK~~G~~avK~Lvy~~~D------~~-e~neqk~a~ierigsec~aedi~f~lE~lt 169 (306)
T COG3684 117 AKRIKEDGGDAVKFLVYYRSD------ED-EINEQKLAYIERIGSECHAEDLPFFLEPLT 169 (306)
T ss_pred HHHHHHhcccceEEEEEEcCC------ch-HHhHHHHHHHHHHHHHhhhcCCceeEeeee
Confidence 567899999999997765321 22 457788899999999999999999999874
No 201
>COG4124 ManB Beta-mannanase [Carbohydrate transport and metabolism]
Probab=38.64 E-value=3.9e+02 Score=26.15 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=71.4
Q ss_pred ccCCC--ceEEeeeccCCCCCC----CCChhHHHHHHHHHHHHHHhc-CCCCeEEe-ccccccCCCCCccccCCCCCCCC
Q 015179 194 YKDDP--TIFAWELMNEARCPT----DPSGTLLQEWIKEMAAHVKSI-DNHHLLEV-GLEGFYGESVPERQKYNPNNTPV 265 (412)
Q Consensus 194 y~~~p--~v~~wel~NEp~~~~----~~~~~~~~~~~~~~~~~Ir~~-dp~~lV~~-g~~g~~~~~~~~~~~~~p~~~~~ 265 (412)
|+ +| ..+-|-..-|++... ..+..++.+.+..+...+|+. .+.++.++ ...+- ......|.|+
T Consensus 174 ~~-s~~~vtiy~r~~mE~n~~~FwWg~~d~~~yk~lw~~~~dy~~~~r~l~~lk~~yspn~~----~~~~~~yYPG---- 244 (355)
T COG4124 174 YK-SNQVVTIYWRPEMEMNSGWFWWGFWDPNQYKQLWIRLHDYLRKSRGLPWLKFMYSPNGG----FKGLEAYYPG---- 244 (355)
T ss_pred hc-CCCceEEEechhhccCCCeeeeccCCHHHHHHHHHHHHHHHhhccCCCeeEEEEcCCCC----cccchhcCCC----
Confidence 55 34 566788888887643 234567888899999999886 23343332 21110 0011123332
Q ss_pred CCccccccCCCCcceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCC------C
Q 015179 266 GTDFITNNQIPDVDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGY------S 339 (412)
Q Consensus 266 g~d~~~~~~~~~iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~------~ 339 (412)
..++|++.+-.|.......+.......+..+. .... ..++. .+||+++.|.|....+. + .
T Consensus 245 ---------d~YVDiVGL~~ysd~~~n~~~~~~~~tyaelt--~~gy-~~~~~-~nKPf~faElGp~~~~D-YV~~~n~~ 310 (355)
T COG4124 245 ---------DNYVDIVGLDVYSDDPYNQGDTGRDKTYAELT--GPGY-NRVAG-FNKPFGFAELGPEGGGD-YVDAWNAD 310 (355)
T ss_pred ---------CceeeeeeeeccccCccccccccccccHHHHh--cCcc-hhhhh-cCCceeeecccccCCCc-cccccccc
Confidence 24567777777765422210000111111110 0000 12233 79999999999988752 1 1
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 015179 340 EQKRNSYFQKVYDAIYDC 357 (412)
Q Consensus 340 ~~~r~~~~~~~~~~~~~~ 357 (412)
...+...+..+-++|+.+
T Consensus 311 ~~~~~~~~~~~SaaI~kn 328 (355)
T COG4124 311 VQIKPADFPKWSAAIYKN 328 (355)
T ss_pred ceecccccHHHHHHHhcc
Confidence 122334455555555543
No 202
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=38.51 E-value=2.9e+02 Score=26.94 Aligned_cols=103 Identities=13% Similarity=0.164 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHH-cCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccc
Q 015179 115 KALDFVVAEARE-YGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVA 193 (412)
Q Consensus 115 ~~ld~~i~~a~~-~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~ 193 (412)
..+.++..+-++ .+++|++.+.. |.. +. . .+ .....+++.++.|.+-+..++++
T Consensus 56 ~~~~~~~~lk~~~p~lkvlisiGG-~~~-~~-~---~f-----------~~~~~~~~~r~~fi~~iv~~l~~-------- 110 (362)
T cd02872 56 GLYERFNALKEKNPNLKTLLAIGG-WNF-GS-A---KF-----------SAMAASPENRKTFIKSAIAFLRK-------- 110 (362)
T ss_pred hHHHHHHHHHhhCCCceEEEEEcC-CCC-Cc-c---hh-----------HHHhCCHHHHHHHHHHHHHHHHH--------
Confidence 344455444333 48999998852 110 00 0 01 11234677888888888778877
Q ss_pred ccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 194 YKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 194 y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
|+=+--.+-||-.+.... ...+.+.+..+++++.+++++..++.++++.
T Consensus 111 ~~~DGidiDwE~p~~~~~-~~~d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 111 YGFDGLDLDWEYPGQRGG-PPEDKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred cCCCCeeeeeeccccCCC-CHHHHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 655545556765432111 0112456888889998888887666666653
No 203
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=38.36 E-value=3.3e+02 Score=25.28 Aligned_cols=67 Identities=13% Similarity=0.250 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccc
Q 015179 112 DTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITG 191 (412)
Q Consensus 112 ~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g 191 (412)
..++.+.+.++.|.+.|..++. ++.. .. . .+ -.+++..+.+.+.++.+++.
T Consensus 91 ~~~~~~~~~i~~a~~lG~~~v~-~~~~-----~~-----~---~~---------~~~~~~~~~~~~~l~~l~~~------ 141 (279)
T TIGR00542 91 QGLEIMEKAIQLARDLGIRTIQ-LAGY-----DV-----Y---YE---------EHDEETRRRFREGLKEAVEL------ 141 (279)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE-ecCc-----cc-----c---cC---------cCCHHHHHHHHHHHHHHHHH------
Confidence 4677899999999999999775 3310 00 0 00 01245567777888888885
Q ss_pred ccccCCCceEEeeeccCC
Q 015179 192 VAYKDDPTIFAWELMNEA 209 (412)
Q Consensus 192 ~~y~~~p~v~~wel~NEp 209 (412)
-+.+--.+++|..+.+
T Consensus 142 --A~~~Gv~l~lE~~~~~ 157 (279)
T TIGR00542 142 --AARAQVTLAVEIMDTP 157 (279)
T ss_pred --HHHcCCEEEEeeCCCc
Confidence 5555566788865433
No 204
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=38.31 E-value=2.9e+02 Score=29.72 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCC----CCcc-cccC---CCCCChhHHHHHHHHHHHHHHcCCEEEEecccC-Ccc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDG----GYRA-LQVS---PGSYNEDTFKALDFVVAEAREYGVYVILSLVNN-FKE 141 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~----~~~~-~~~~---~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~-w~~ 141 (412)
.+.+...|+.++++|+|+|=+-+|.+. -++. +.|+ |++ ...|+++-..+ +.++|++|.-=+... +..
T Consensus 333 ~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~~~lp~r--~d~f~~~aw~l--~~r~~v~v~AWmp~~~~~~ 408 (671)
T PRK14582 333 DRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPNRLLPMR--ADLFNRVAWQL--RTRAGVNVYAWMPVLSFDL 408 (671)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCccccccc--cCCcCHHHHHH--HHhhCCEEEEeccceeecc
Confidence 567899999999999999988666632 1211 1111 221 22344444444 888899875433210 111
Q ss_pred CCCchhhhhhHHhhCCCCCCcCcc---C--CCHHHHHHHHHHHHHHHhcccccccccccCCCceEEee------------
Q 015179 142 YGGRPRYVEWARERGQSLKNEDDF---Y--TNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWE------------ 204 (412)
Q Consensus 142 ~gg~~~~~~w~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~we------------ 204 (412)
....+.-..+.. .+.+...+..+ . -+|++++...+..+.++.+ .++.|..|.++..+--||
T Consensus 409 ~~~~~~~~~~~~-~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~-~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~ 486 (671)
T PRK14582 409 DPTLPRVKRLDT-GEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGH-AAFDGILFHDDAVLSDYEDASAPAITAYQQ 486 (671)
T ss_pred CCCcchhhhccc-cCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHh-CCCceEEecccccccccccCCHHHHHHHHH
Confidence 011100001100 00000001111 1 1589999999999998886 578888777774333222
Q ss_pred --eccCCCCCCCCChh-----------HHHHHHHHHHHHHHhcCCCCeEEe
Q 015179 205 --LMNEARCPTDPSGT-----------LLQEWIKEMAAHVKSIDNHHLLEV 242 (412)
Q Consensus 205 --l~NEp~~~~~~~~~-----------~~~~~~~~~~~~Ir~~dp~~lV~~ 242 (412)
+-.....-. .+.+ .+..+..++...+|...|-.+.+.
T Consensus 487 ~g~~~~~~~~~-~~~~~~~~wt~~k~~~l~~f~~~l~~~v~~~~~~~~~ta 536 (671)
T PRK14582 487 AGFSGSLSEIR-QNPEQFKQWTRFKSRALTDFTLELSARVKAIRGPQVKTA 536 (671)
T ss_pred cCCCcchhhhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccceee
Confidence 111111100 0112 234566788888998876455554
No 205
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=38.29 E-value=1.8e+02 Score=26.87 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
...|++.|++.+=+ .+++.. . .|+ +.-+.+.+-+..|.++||.+++++-.
T Consensus 77 ~~mL~d~G~~~vii-GHSERR--~------~f~-Etd~~i~~Kv~~al~~gl~pIvCvGE 126 (244)
T PF00121_consen 77 AEMLKDLGCKYVII-GHSERR--Q------YFG-ETDEIINKKVKAALENGLTPIVCVGE 126 (244)
T ss_dssp HHHHHHTTESEEEE-SCHHHH--H------HST--BHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHhhCCEEEe-cccccc--C------ccc-cccHHHHHHHHHHHHCCCEEEEEecc
Confidence 67889999999988 554210 0 011 12356778889999999999999863
No 206
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=38.29 E-value=3.8e+02 Score=27.15 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCC-EEEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGV-YVILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi-~vil~l~ 136 (412)
.++.++.|+++|+|.|-+ .+...+-..+. .-+. ....+.+.+.++.+++.|+ .+.+++.
T Consensus 150 t~e~l~~l~~aG~~risi-GvqS~~~~~L~-~l~r--~~~~~~~~~ai~~l~~~G~~~v~~dli 209 (453)
T PRK09249 150 DLEMLDALRELGFNRLSL-GVQDFDPEVQK-AVNR--IQPFEFTFALVEAARELGFTSINIDLI 209 (453)
T ss_pred CHHHHHHHHHcCCCEEEE-CCCCCCHHHHH-HhCC--CCCHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 467899999999997776 33211100111 1111 1235677788999999999 6777765
No 207
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=38.08 E-value=60 Score=31.04 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcc-cccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRA-LQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~-~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.+.++.+++.|+..==++ + |.+|.. ..-..-.+|++.|-...++++.++++|+++++.++
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~-l-D~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 22 DEEEVNEFADGMRERNLPCDVIH-L-DCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEE-E-ecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEec
Confidence 35688999999999997653331 1 111210 00001234666666788999999999999999876
No 208
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=37.88 E-value=65 Score=30.29 Aligned_cols=58 Identities=16% Similarity=0.132 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
..++.+.+.|++.||+. ++-.+. ..+...+.-.++.++.+.+.++.|+++|+.|.+..
T Consensus 82 ~~~~~a~~~g~~~i~i~-~~~sd~-~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ 139 (273)
T cd07941 82 PNLQALLEAGTPVVTIF-GKSWDL-HVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDA 139 (273)
T ss_pred HHHHHHHhCCCCEEEEE-EcCCHH-HHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeE
Confidence 56888999999999993 220000 01222222235678899999999999999988854
No 209
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=37.66 E-value=73 Score=29.87 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++++...+.|+..||+. +. ...++.+.+.++.++++|+.|.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~-~~---------------~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVA-FH---------------KHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEe-cc---------------cccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 457888889999999993 21 123788889999999999999988764
No 210
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=37.46 E-value=65 Score=30.60 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++...+.|+..||++.-.. ....+.+-+.-.++.++.+...++.|+++|+.+...+.
T Consensus 82 ~~~ie~A~~~g~~~v~i~~~~s--~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~ 141 (287)
T PRK05692 82 LKGLEAALAAGADEVAVFASAS--EAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVS 141 (287)
T ss_pred HHHHHHHHHcCCCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 4567888899999999953210 00111122222456788999999999999999987765
No 211
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=37.24 E-value=1.5e+02 Score=31.51 Aligned_cols=84 Identities=20% Similarity=0.214 Sum_probs=54.4
Q ss_pred ECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCc-------ccc---------------
Q 015179 46 VNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYR-------ALQ--------------- 103 (412)
Q Consensus 46 ~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~-------~~~--------------- 103 (412)
.|+-.|-.+|+-.=- +....+.+++.+.++.|++.++|.+-++.-.|+.|+ .+.
T Consensus 256 ~DaPRf~~rGllvDv----aRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq 331 (732)
T COG3525 256 VDAPRFAWRGLLVDV----ARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQ 331 (732)
T ss_pred ccCcccchhhhhHhh----hhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCcc
Confidence 355566666654310 111124578999999999999999998665554442 110
Q ss_pred ----cC--CCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 104 ----VS--PGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 104 ----~~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
++ .|.|+. +.+..+++.|.+++|.|++++.
T Consensus 332 ~g~~pe~~ggfytq---d~~relv~yAsar~ItviPeiD 367 (732)
T COG3525 332 LGYGPERMGGFYTQ---DDIRELVAYASARQITVIPEID 367 (732)
T ss_pred cccCcccccCcccH---HHHHHHHHHHhhcCceecCCcC
Confidence 01 134554 3466789999999999999985
No 212
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=36.88 E-value=59 Score=31.28 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
..+.++++|.+.+-+.++.+. +.+...|......+.++-+.|.+.+|-.++++-.
T Consensus 110 S~~rike~GadavK~Llyy~p------D~~~~in~~k~a~vervg~eC~a~dipf~lE~lt 164 (324)
T PRK12399 110 SAKRIKEEGADAVKFLLYYDV------DEPDEINEQKKAYIERIGSECVAEDIPFFLEILT 164 (324)
T ss_pred hHHHHHHhCCCeEEEEEEECC------CCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEee
Confidence 367789999999999665421 1222345667888999999999999999999874
No 213
>PLN02692 alpha-galactosidase
Probab=36.80 E-value=2.4e+02 Score=28.38 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred CC-EEEEEeeeecccccccCCCcCcHHHHHHHHHHH-----HHcCCCEEEeccccCCCCccc-ccCCCC--CChhHH-HH
Q 015179 47 NG-KPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQA-----TKYGMNIARTWAFSDGGYRAL-QVSPGS--YNEDTF-KA 116 (412)
Q Consensus 47 dG-~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l-----~~~G~N~vR~~~~~~~~~~~~-~~~~g~--~~~~~l-~~ 116 (412)
|| .+..+.|.|-+....... +.+.+.+..+.+ +++|.+.|=+-. +|... ....|. .|++.| .-
T Consensus 50 ngla~tPpmGWnSW~~~~~~i---~E~~i~~~ad~~~~~gl~~~Gy~yv~iDD----gW~~~~rd~~G~~~~d~~kFP~G 122 (412)
T PLN02692 50 NGLGITPPMGWNSWNHFSCKI---DEKMIKETADALVSTGLSKLGYTYVNIDD----CWAEIARDEKGNLVPKKSTFPSG 122 (412)
T ss_pred CcCcCCCcceEEchhhhCccc---CHHHHHHHHHHHHhccchhcCcEEEEEcC----CcCCCCCCCCCCeeeChhhcCCc
Confidence 55 233367887655332221 345666666654 667888776622 22110 011121 233334 23
Q ss_pred HHHHHHHHHHcCCEEEEec
Q 015179 117 LDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 117 ld~~i~~a~~~Gi~vil~l 135 (412)
|..+.+.++++||+.=+-.
T Consensus 123 ~k~ladyiH~~GLKfGIy~ 141 (412)
T PLN02692 123 IKALADYVHSKGLKLGIYS 141 (412)
T ss_pred HHHHHHHHHHCCCceEEEe
Confidence 7889999999999987755
No 214
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=36.75 E-value=3.8e+02 Score=25.51 Aligned_cols=157 Identities=15% Similarity=0.175 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCC-CChh----HHHHHHHHH-HHHHHcCCEEEEeccc-CCccCC
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGS-YNED----TFKALDFVV-AEAREYGVYVILSLVN-NFKEYG 143 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~-~~~~----~l~~ld~~i-~~a~~~Gi~vil~l~~-~w~~~g 143 (412)
...++..|+.++++|+|+|=+=.|.|..=... ..+. |... .-+-+.++. ++..+.|++|..=+.. .|..+
T Consensus 16 ~~nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~--~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp- 92 (294)
T PF14883_consen 16 ERNLDKLIQRIKDMGINTVYLQAFADPDGDGN--ADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLP- 92 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeCCCCCCc--eeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCC-
Confidence 45789999999999999998856764210000 0011 1111 112344444 4455788877554431 12221
Q ss_pred CchhhhhhHHhhCCCCCCcCcc----CCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeee---ccCCCCCCCCC
Q 015179 144 GRPRYVEWARERGQSLKNEDDF----YTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWEL---MNEARCPTDPS 216 (412)
Q Consensus 144 g~~~~~~w~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel---~NEp~~~~~~~ 216 (412)
+.+ .|........ +...+ .-+|++++...+..+.++.. ++|.|.-|.++..+--+|+ -+++.. ...
T Consensus 93 ~~~---~~~~~~~~~~-~~~~y~RLSPf~p~~r~~I~~IYeDLA~y-~~fdGILFhDDa~L~D~E~~~~~~~~~~--~~K 165 (294)
T PF14883_consen 93 KVK---RADEVRTDRP-DPDGYRRLSPFDPEARQIIKEIYEDLARY-SKFDGILFHDDAVLSDFEIAAIRQNPAD--RQK 165 (294)
T ss_pred Ccc---hhhhccccCC-CCCCceecCCCCHHHHHHHHHHHHHHHhh-CCCCeEEEcCCccccchhhhhhccChhh--HHH
Confidence 111 1110000000 01111 11688888888888888774 6788888877754444451 121111 012
Q ss_pred hhHHHHHHHHHHHHHHhcCCC
Q 015179 217 GTLLQEWIKEMAAHVKSIDNH 237 (412)
Q Consensus 217 ~~~~~~~~~~~~~~Ir~~dp~ 237 (412)
.+.+..+..++...+|...|.
T Consensus 166 t~~Li~ft~eL~~~v~~~rp~ 186 (294)
T PF14883_consen 166 TRALIDFTMELAAAVRRYRPD 186 (294)
T ss_pred HHHHHHHHHHHHHHHHHhCcc
Confidence 245788889999999998875
No 215
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=36.72 E-value=4.2e+02 Score=26.03 Aligned_cols=59 Identities=15% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.+++.|+|.|-+ ..-..+-..+. .-+. ....+.+.+.++.+++.|+. +.++|.
T Consensus 102 ~~~~l~~l~~~G~nrisl-GvQS~~~~~L~-~l~R--~~~~~~~~~ai~~~~~~g~~~v~~Dli 161 (370)
T PRK06294 102 SESYIRALALTGINRISI-GVQTFDDPLLK-LLGR--THSSSKAIDAVQECSEHGFSNLSIDLI 161 (370)
T ss_pred CHHHHHHHHHCCCCEEEE-ccccCCHHHHH-HcCC--CCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 367799999999996665 22211100111 1111 11245667788899999995 778875
No 216
>PRK14001 potassium-transporting ATPase subunit C; Provisional
Probab=36.43 E-value=52 Score=29.09 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=12.5
Q ss_pred CChhHHHHHHHHHHHHHHc
Q 015179 109 YNEDTFKALDFVVAEAREY 127 (412)
Q Consensus 109 ~~~~~l~~ld~~i~~a~~~ 127 (412)
-+++..+++.+-++...+.
T Consensus 90 snp~l~~~v~~r~~~~~~~ 108 (189)
T PRK14001 90 TNEKLLAAVAERVTAYRKE 108 (189)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4677778887767654443
No 217
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.12 E-value=80 Score=32.27 Aligned_cols=58 Identities=10% Similarity=0.177 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
++.++.|++.|++.|-+ .+..++-..+..- ++ ....+.+.+.++.++++||.+..++.
T Consensus 287 ~e~l~~l~~aG~~~v~i-GiES~s~~~L~~~-~K--~~~~~~~~~~i~~~~~~Gi~v~~~~I 344 (472)
T TIGR03471 287 YETLKVMKENGLRLLLV-GYESGDQQILKNI-KK--GLTVEIARRFTRDCHKLGIKVHGTFI 344 (472)
T ss_pred HHHHHHHHHcCCCEEEE-cCCCCCHHHHHHh-cC--CCCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 56788888888886666 4432221111110 10 11245677899999999999888775
No 218
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=35.23 E-value=93 Score=33.11 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=50.4
Q ss_pred ceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEeccccccCCCCCccccCCCCCCCCCCcccccc-CCCC
Q 015179 199 TIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVGLEGFYGESVPERQKYNPNNTPVGTDFITNN-QIPD 277 (412)
Q Consensus 199 ~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g~~g~~~~~~~~~~~~~p~~~~~g~d~~~~~-~~~~ 277 (412)
.|-...++||-.. + ..|++.+..++.+.+-+++=+++.++.+.. .+.+...+. ....
T Consensus 173 ~idYvg~~NEr~~----~----~~~ik~lr~~l~~~gy~~vkiva~D~~~~~--------------~~~~m~~D~~l~~a 230 (669)
T PF02057_consen 173 DIDYVGIWNERGF----D----VNYIKWLRKALNSNGYNKVKIVAADNNWES--------------ISDDMLSDPELRNA 230 (669)
T ss_dssp ---EE-S-TTS-----------HHHHHHHHHHHHHTT-TT-EEEEEEE-STT--------------HHHHHHH-HHHHHH
T ss_pred CceEechhhccCC----C----hhHHHHHHHHHhhccccceEEEEeCCCccc--------------hhhhhhcCHHHHhc
Confidence 3444567999754 1 457777777787777665555554443211 001111110 1234
Q ss_pred cceEeeecCCCCCCCCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcEEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 015179 278 VDFATIHIYPEQWLPPGNTSDEIQLAFVNRWIQAHIQDSDSILKKPILIGEFGKSYKYPGYSEQKRNSYFQKVYDAIYDC 357 (412)
Q Consensus 278 iDv~s~H~Y~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~gkPv~igE~G~~~~~~g~~~~~r~~~~~~~~~~~~~~ 357 (412)
+|+++.| |+... +. + .++. .+||||-+|=+..-+. .....-+-+.+.....+
T Consensus 231 vdvig~H-Y~~~~------~~------------~---~a~~-~~K~lW~SE~~s~~~~----~~g~g~~ar~ln~~yv~- 282 (669)
T PF02057_consen 231 VDVIGYH-YPGTY------SS------------K---NAKL-TGKPLWSSEDYSTFNY----NVGAGCWARILNRNYVN- 282 (669)
T ss_dssp --EEEEE-S-TT---------------------H---HHHH-HT-EEEEEEEE-S-TT----HHHHHHHHHHHHHHHHH-
T ss_pred ccEeccc-cCCCC------cH------------H---HHHH-hCCCeEEcCCcccccC----cCchHHHHHHHHhhhhc-
Confidence 7999999 44321 10 0 1222 5999999996655332 11111222222222211
Q ss_pred hhcCCCccccccccccc
Q 015179 358 AKSKGPCGGGLFWQLMT 374 (412)
Q Consensus 358 ~~~~~~~~G~~~W~~~~ 374 (412)
++....++|.+..
T Consensus 283 ----g~mT~~I~w~lVa 295 (669)
T PF02057_consen 283 ----GRMTAYINWPLVA 295 (669)
T ss_dssp ----H--SEEEEE-SEE
T ss_pred ----cceEEEEeehhhh
Confidence 2356788888875
No 219
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=34.99 E-value=4.5e+02 Score=25.89 Aligned_cols=59 Identities=17% Similarity=0.054 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..+.++.++++|+|-|-+ ..-..+-..+ ..-+. ....+.+.+.++++++.++.|.++|.
T Consensus 103 ~~e~L~~l~~~Gvnrisl-GvQS~~d~vL-~~l~R--~~~~~~~~~ai~~~~~~~~~v~~dli 161 (380)
T PRK09057 103 EAGRFRGYRAAGVNRVSL-GVQALNDADL-RFLGR--LHSVAEALAAIDLAREIFPRVSFDLI 161 (380)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCHHHH-HHcCC--CCCHHHHHHHHHHHHHhCccEEEEee
Confidence 347899999999996666 3221111111 11111 11244556677888888998999885
No 220
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=34.55 E-value=4.5e+02 Score=25.76 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.|+++|+|.|-+ .....+-..+. .-+. ....+.+.+.++.+++.|+. +.+++.
T Consensus 107 ~~e~l~~l~~~G~~rvsl-GvQS~~~~~L~-~l~R--~~s~~~~~~a~~~l~~~g~~~v~~dli 166 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSL-GMQSAAPHVLA-VLDR--THTPGRAVAAAREARAAGFEHVNLDLI 166 (375)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCHHHHH-HcCC--CCCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 457899999999996666 33211111111 1111 12255667888899999998 888875
No 221
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=33.93 E-value=99 Score=35.49 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=46.2
Q ss_pred CEEEE--EeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHH
Q 015179 48 GKPLY--LNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAR 125 (412)
Q Consensus 48 G~~~~--~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~ 125 (412)
+.++. ++|.|.-.....+ .+.++..++.+++.|++.+|++..- ..++.|...++.++
T Consensus 604 n~~~qml~Rg~n~vgy~~yp-----d~vv~~f~~~~~~~GidifrifD~l----------------N~~~n~~~~~~~~~ 662 (1143)
T TIGR01235 604 NILFQMLLRGANGVGYTNYP-----DNVVKYFVKQAAQGGIDIFRVFDSL----------------NWVENMRVGMDAVA 662 (1143)
T ss_pred CCceeeeeccccccCccCCC-----HHHHHHHHHHHHHcCCCEEEECccC----------------cCHHHHHHHHHHHH
Confidence 34444 7899974432222 3578888999999999999995311 12566677777777
Q ss_pred HcCCEEEEecc
Q 015179 126 EYGVYVILSLV 136 (412)
Q Consensus 126 ~~Gi~vil~l~ 136 (412)
+.|..+-..+.
T Consensus 663 ~~g~~~~~~i~ 673 (1143)
T TIGR01235 663 EAGKVVEAAIC 673 (1143)
T ss_pred HcCCEEEEEEE
Confidence 78877766664
No 222
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.85 E-value=1.2e+02 Score=21.24 Aligned_cols=46 Identities=13% Similarity=0.140 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
..++.++.+++.|++.+=+--+. .+....++.+.+++.||.++.-+
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~-----------------~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG-----------------NLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC-----------------cccCHHHHHHHHHHcCCeEEEEE
Confidence 57789999999999988772111 12223466777888999998755
No 223
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=33.48 E-value=77 Score=31.05 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++.+.+.|+..|.++.-. +-...+.+-+.-.++.++.+.++++.|+++|+.|...+.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~--Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is 183 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASA--SESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVS 183 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEec--CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 567888889999999884311 000112222233467889999999999999999987664
No 224
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=33.24 E-value=1.2e+02 Score=31.12 Aligned_cols=50 Identities=30% Similarity=0.399 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
-++.|+.|-++|+|++|+ -|+.|++ +.+-++++.+=+.+++.|..|-+-+
T Consensus 19 s~e~l~~li~aG~nV~Rl-NfSHG~~-----------e~h~~~i~~vR~~~~~~~~~vaIl~ 68 (477)
T COG0469 19 SEEMLEKLIEAGMNVVRL-NFSHGDH-----------EEHKKRIDNVREAAEKLGRPVAILL 68 (477)
T ss_pred CHHHHHHHHHccCcEEEE-ecCCCCh-----------HHHHHHHHHHHHHHHHhCCceEEEE
Confidence 346688899999999999 6764542 3445677777777777776654444
No 225
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=33.20 E-value=4.6e+02 Score=25.39 Aligned_cols=64 Identities=11% Similarity=0.204 Sum_probs=42.2
Q ss_pred cCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhc
Q 015179 162 EDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSI 234 (412)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~ 234 (412)
-..||++|...+++.+.++.-.+. +.-++.++.+.---=|....+ .|+.+...+++.+..|++.
T Consensus 156 I~~~~~~p~yI~a~a~~I~~~~~~--------~~~~~~~llfSaHglP~~~~~-~GDpY~~q~~~t~~li~e~ 219 (320)
T COG0276 156 IPDYYDEPLYIEALADSIREKLAK--------HPRDDDVLLFSAHGLPKRYID-EGDPYPQQCQETTRLIAEA 219 (320)
T ss_pred ecCccCChHHHHHHHHHHHHHHHh--------cCCCCeEEEEecCCCchhhhh-cCCchHHHHHHHHHHHHHH
Confidence 356888899888888777766554 432345555555444543322 3566888999999999884
No 226
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=33.11 E-value=1.1e+02 Score=28.18 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..++.++.+++.|++.|=++... + +..+.++++++.++++||.+++.++
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp------~---------e~~~~~~~~~~~~~~~Gl~~~~~v~ 137 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLL------I---------DYPDDLEKYVEIIKNKGLKPVFFTS 137 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCC------C---------CcHHHHHHHHHHHHHcCCCEEEEEC
Confidence 45667888889999977773211 1 1235678899999999999999987
No 227
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=33.10 E-value=81 Score=27.37 Aligned_cols=46 Identities=11% Similarity=0.176 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHH--HHHHHHHHHHHcCCEEE
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFK--ALDFVVAEAREYGVYVI 132 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~--~ld~~i~~a~~~Gi~vi 132 (412)
+..+++|++.++++|++.|=. +. ...-|. ++..+.+.++++||...
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt--l~--------------~~~EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT--LL--------------TDHELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE---S---------------HHHHHHTT-TTHHHHHHHTT-EEE
T ss_pred cchHHHHHHHHHHCCCCEEEE--eC--------------cHHHHHHcCCccHHHHHHHcCCEEE
Confidence 457899999999999998733 33 111122 24468899999999764
No 228
>PRK09989 hypothetical protein; Provisional
Probab=32.95 E-value=1e+02 Score=28.43 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.++..+.+|...|+++... .+. ............+.+.++.+.|+++|+.+.+...
T Consensus 85 ~~l~~~i~~A~~lg~~~v~v~~g~---~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l 145 (258)
T PRK09989 85 ADIDLALEYALALNCEQVHVMAGV---VPA-GEDAERYRAVFIDNLRYAADRFAPHGKRILVEAL 145 (258)
T ss_pred HHHHHHHHHHHHhCcCEEEECccC---CCC-CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457778888899999999984321 000 0000001123557888999999999999988754
No 229
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=32.94 E-value=2.6e+02 Score=26.57 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=35.7
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...-+.||++|=+ |++--++ ++-++.-.++++.|+++|+-|=.+|-.
T Consensus 88 e~i~~ai~~GftSVMi----DgS~lp~--------eeNi~~T~~vv~~Ah~~gvsVEaElG~ 137 (284)
T PRK12737 88 DDIKKKVRAGIRSVMI----DGSHLSF--------EENIAIVKEVVEFCHRYDASVEAELGR 137 (284)
T ss_pred HHHHHHHHcCCCeEEe----cCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 3455555679998877 3332222 344777789999999999999999863
No 230
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=32.84 E-value=76 Score=30.64 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
-..+.++++|.+.+-+.++.+.+ .+-..|......+.++-+.|.+.+|-.++++-.
T Consensus 111 ws~~rike~GadavK~Llyy~pD------~~~ein~~k~a~vervg~eC~a~dipf~lE~l~ 166 (329)
T PRK04161 111 WSVKRLKEAGADAVKFLLYYDVD------GDEEINDQKQAYIERIGSECTAEDIPFFLELLT 166 (329)
T ss_pred hhHHHHHHhCCCeEEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 34778999999999996654211 122335667788999999999999999999874
No 231
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.72 E-value=78 Score=31.17 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++++.+.+.|+..||++.-.. ....+..-+.-.++.++.+.+.++.|+++|+.|.+.+.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S--d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~ed 134 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATS--PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAED 134 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 5678889999999999943210 001111112223567889999999999999999887753
No 232
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=32.37 E-value=5.2e+02 Score=25.74 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.+++.|+|.|-+ ..-..+- .+...-+. ....+.+.+.++.+++.|+. +.++|.
T Consensus 114 t~e~l~~l~~~Gvnrisl-GvQS~~d-~~L~~l~R--~~~~~~~~~ai~~l~~~G~~~v~~dlI 173 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSL-GVQAFQD-ELLALCGR--SHRVKDIFAAVDLIHQAGIENFSLDLI 173 (400)
T ss_pred CHHHHHHHHHCCCCEEEE-EcccCCH-HHHHHhCC--CCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 457899999999995555 2221111 11111111 12255667888999999998 778875
No 233
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=31.99 E-value=81 Score=30.41 Aligned_cols=55 Identities=11% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
..+.++++|.+.+-+.++.+ +- .+-..+......+.++-+.|.+++|-.++++-.
T Consensus 111 s~~rike~GadavK~Llyy~----pD--~~~ein~~k~a~vervg~ec~a~dipf~lE~lt 165 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD----VD--DAEEINIQKKAYIERIGSECVAEDIPFFLEVLT 165 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC----CC--CChHHHHHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 46778999999999966542 11 112345667888999999999999999999874
No 234
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=31.69 E-value=88 Score=31.00 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=41.3
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++.+.+.|+..||++.-. +....+.+-+.-.++.++.+.+.++.|+++|+.|.+...
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~--Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIAT--SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcC--CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 556888889999999994321 000111122222467789999999999999999988764
No 235
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=31.57 E-value=4.5e+02 Score=26.33 Aligned_cols=127 Identities=19% Similarity=0.306 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCC-chhh
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGG-RPRY 148 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg-~~~~ 148 (412)
+.+++.+.++.+++.|+-.==++ +. ..|.. ....-.+|++.|..+.++++.++++|+++++.++..-..... .+.|
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~-iD-~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~ 117 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIW-ID-DDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENY 117 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEE-E--GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHH
T ss_pred CHHHHHHHHHHHHHcCCCcccee-cc-ccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhh
Confidence 35688999999999988754442 21 11111 111224566777788999999999999999988632111111 1122
Q ss_pred hhhHHhhCCCCCC---------------cCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCC
Q 015179 149 VEWARERGQSLKN---------------EDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 211 (412)
Q Consensus 149 ~~w~~~~g~~~~~---------------~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~ 211 (412)
.... +.|.-+.+ ..-=++++++++.+.+.++.+.+. +.-+ ..|.=+|||..
T Consensus 118 ~~~~-~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~--------~Gvd---g~w~D~~E~~~ 183 (441)
T PF01055_consen 118 DEAK-EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDD--------YGVD---GWWLDFGEPSS 183 (441)
T ss_dssp HHHH-HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTT--------ST-S---EEEEESTTTBS
T ss_pred hhHh-hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhc--------cCCc---eEEeecCCccc
Confidence 2111 11110000 001156799988888888887664 3322 23566888875
No 236
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=31.39 E-value=1.2e+02 Score=27.22 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.++++|++.+=+ .+++. . |.++. +.+-+..|.++||.+++++.
T Consensus 74 ~~mLkd~G~~~vii-GHSER-------R---f~Etd---i~~Kv~~a~~~gl~~IvCi~ 118 (205)
T TIGR00419 74 AEMLKDIGAKGTLI-NHSER-------R---MKLAD---IEKKIARLKELGLTSVVCTN 118 (205)
T ss_pred HHHHHHcCCCEEEE-CcccC-------C---CCccH---HHHHHHHHHHCCCEEEEEEH
Confidence 67889999999988 66521 1 34433 78889999999999999983
No 237
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.35 E-value=1.2e+02 Score=29.68 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++++...+.|+..||+.... ++ .+.+.+.++.++++|+.+.+.+..
T Consensus 92 ~dl~~a~~~gvd~iri~~~~--------------~e--~~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHC--------------TE--ADVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHcCCCEEEEEEec--------------ch--HHHHHHHHHHHHHCCCeEEEEEEe
Confidence 57899999999999994332 11 235678999999999999988763
No 238
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=31.28 E-value=1.8e+02 Score=29.78 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=47.5
Q ss_pred CCEEEEE--eeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHH
Q 015179 47 NGKPLYL--NGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEA 124 (412)
Q Consensus 47 dG~~~~~--~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a 124 (412)
.+.++.. +|.|.-.....+ .+.++..++.+.+.|+..+|++... ++ ++.+...++.+
T Consensus 73 ~~~~l~~l~r~~N~~G~~~~~-----dDvv~~fv~~A~~~Gvd~irif~~l--------------nd--~~n~~~~i~~a 131 (467)
T PRK14041 73 KNTKIQMLLRGQNLVGYRHYA-----DDVVELFVKKVAEYGLDIIRIFDAL--------------ND--IRNLEKSIEVA 131 (467)
T ss_pred CCCEEEEEeccccccCccccc-----chhhHHHHHHHHHCCcCEEEEEEeC--------------CH--HHHHHHHHHHH
Confidence 3445544 777763321112 2367778999999999999995321 11 56788899999
Q ss_pred HHcCCEEEEecc
Q 015179 125 REYGVYVILSLV 136 (412)
Q Consensus 125 ~~~Gi~vil~l~ 136 (412)
+++|+.+...+.
T Consensus 132 k~~G~~v~~~i~ 143 (467)
T PRK14041 132 KKHGAHVQGAIS 143 (467)
T ss_pred HHCCCEEEEEEE
Confidence 999999887664
No 239
>PF14386 DUF4417: Domain of unknown function (DUF4417)
Probab=31.24 E-value=1.5e+02 Score=26.54 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCC-----CcCccCCCHHHHHHHHHHHHHHHhc
Q 015179 116 ALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLK-----NEDDFYTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 116 ~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~r 185 (412)
+-..+-...+++||.||.++. |. ....|.-|. .|.+-. +....-.+.+.++.|..-+..+++|
T Consensus 98 R~r~~g~~~q~~Gi~VIP~v~--W~---~~~s~~~~~--~gi~~~~ivaist~g~~~~~~~~~~f~~Gl~em~~r 165 (200)
T PF14386_consen 98 RSRWLGAYWQSNGIKVIPNVS--WS---DKRSFDFCF--DGIPKGSIVAISTNGCINNKEDKKLFLDGLREMLKR 165 (200)
T ss_pred HHHHHHHHHHHCCCeEcceEE--ec---CcchHHHHH--hhcccCCEEEEEEecccCCHHHHHHHHHHHHHHHhc
Confidence 444677788999999999985 22 222222222 232211 1223455788889999999999999
No 240
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=31.00 E-value=1.8e+02 Score=31.16 Aligned_cols=64 Identities=17% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEecc-cc---CCC---------C------cccccCCCCCChhHHHHHHHHHHHHHHcCCEE
Q 015179 71 KAKVTAAFQQATKYGMNIARTWA-FS---DGG---------Y------RALQVSPGSYNEDTFKALDFVVAEAREYGVYV 131 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~-~~---~~~---------~------~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~v 131 (412)
...+.+-.+.++++|++.+-+-+ +. |+. | ..-...|.+|. ..+.|...|..+++.||.|
T Consensus 586 N~~IA~Na~lFk~wGITsFemAPQY~Ss~D~tFLDSiiqNGYAFtDRYDLg~s~ptKYG--s~~dL~~AikALH~~Giqv 663 (809)
T PF02324_consen 586 NVVIAKNADLFKSWGITSFEMAPQYRSSTDGTFLDSIIQNGYAFTDRYDLGMSKPTKYG--SVEDLRNAIKALHAAGIQV 663 (809)
T ss_dssp HHHHHHTHHHHHHTTEEEEE----S-B--SSSSHHHHTT-SSSBS-TT-SSSSS-BTTB---HHHHHHHHHHHHHTT-EE
T ss_pred HHHHHHhHHHHHhcCcceeeeCcceecCCCCcchhhHhhcCccccchhhhcCCCCCCCC--CHHHHHHHHHHHHHcCcch
Confidence 35677888999999999998822 11 221 1 11112344454 3567888999999999999
Q ss_pred EEecc
Q 015179 132 ILSLV 136 (412)
Q Consensus 132 il~l~ 136 (412)
|-++-
T Consensus 664 iaDwV 668 (809)
T PF02324_consen 664 IADWV 668 (809)
T ss_dssp EEEE-
T ss_pred hhhhc
Confidence 99974
No 241
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=30.92 E-value=3e+02 Score=26.15 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhC
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERG 156 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g 156 (412)
.+...-+.||++|=+ |++-.++ ++-.+.-.++++.|+++|+-|=.++-. .+|.. ++
T Consensus 88 ~i~~ai~~GftSVM~----DgS~l~~--------eeNi~~T~~vv~~ah~~gv~VEaElG~----i~g~e--------d~ 143 (287)
T PF01116_consen 88 DIKRAIDAGFTSVMI----DGSALPF--------EENIAITREVVEYAHAYGVSVEAELGH----IGGKE--------DG 143 (287)
T ss_dssp HHHHHHHHTSSEEEE----E-TTS-H--------HHHHHHHHHHHHHHHHTT-EEEEEESB----SSSSC--------TT
T ss_pred HHHHHHHhCcccccc----cCCcCCH--------HHHHHHHHHHHHhhhhhCCEEEEEeee----eeccC--------CC
Confidence 445555669999866 3332222 344777789999999999999999863 23321 12
Q ss_pred CCCCC-cCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCC-ChhHHHHHHHHHHHHHHhc
Q 015179 157 QSLKN-EDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDP-SGTLLQEWIKEMAAHVKSI 234 (412)
Q Consensus 157 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~-~~~~~~~~~~~~~~~Ir~~ 234 (412)
..... ...+|++|+-... ++++ -+- ..++..++|--..+... ...--.+.++++.+.++
T Consensus 144 ~~~~~~~~~~~TdP~~a~~-------Fv~~--------Tgv--D~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~-- 204 (287)
T PF01116_consen 144 IESEEETESLYTDPEEAKE-------FVEE--------TGV--DALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVP-- 204 (287)
T ss_dssp CSSSTT-TTCSSSHHHHHH-------HHHH--------HTT--SEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHH--
T ss_pred ccccccccccccCHHHHHH-------HHHH--------hCC--CEEEEecCccccccCCCCCcccCHHHHHHHHHhcC--
Confidence 11111 2568999875332 2333 111 24678888876654320 11111334455555554
Q ss_pred CCCCeEEeccc
Q 015179 235 DNHHLLEVGLE 245 (412)
Q Consensus 235 dp~~lV~~g~~ 245 (412)
+--+|.-|++
T Consensus 205 -~iPLVlHGgS 214 (287)
T PF01116_consen 205 -DIPLVLHGGS 214 (287)
T ss_dssp -TSEEEESSCT
T ss_pred -CCCEEEECCC
Confidence 3345555543
No 242
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=30.80 E-value=1.2e+02 Score=28.32 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-.++.++.+++.|++.|=++... ++..+.+++.|+++||..++-+.
T Consensus 107 G~e~F~~~~~~aGvdgviipDLP------------------~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDLP------------------YEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCCC------------------HHHHHHHHHHHHHcCCCEEEEEC
Confidence 35667788888888877663211 35577899999999999988764
No 243
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=30.68 E-value=92 Score=30.44 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
..+.++++|.+.|=+.++.+.+ .+...+...++.+.++.+.|+++||-+++.+.
T Consensus 111 sve~a~~~GAdAVk~lv~~~~d------~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 111 SVRRIKEAGADAVKLLLYYRPD------EDDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred cHHHHHHcCCCEEEEEEEeCCC------cchHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 3677899999999997664211 01112356788999999999999999999854
No 244
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=30.64 E-value=1.3e+02 Score=29.29 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++++.+.+.|+..||+.... ++ .+...+.++.++++|+.+...+..
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~--------------~e--~d~~~~~i~~ak~~G~~v~~~l~~ 136 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHC--------------TE--ADVSEQHIGMARELGMDTVGFLMM 136 (333)
T ss_pred HHHHHHHHHCCCCEEEEEecc--------------ch--HHHHHHHHHHHHHcCCeEEEEEEc
Confidence 357899999999999994332 11 234678999999999999888753
No 245
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=30.49 E-value=2.9e+02 Score=26.19 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...-+.||++|=+ |++--++ ++-++.-.++++.|+++|+-|=.+|-.
T Consensus 86 e~i~~ai~~GFtSVM~----DgS~lp~--------eeNi~~T~~vv~~Ah~~gv~VEaElG~ 135 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMI----DGSHFPF--------AQNVKLVKEVVDFCHRQDCSVEAELGR 135 (282)
T ss_pred HHHHHHHHcCCCEEee----cCCCCCH--------HHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3456666779998877 3332222 344777889999999999999999863
No 246
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=30.34 E-value=1.4e+02 Score=29.86 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=60.4
Q ss_pred HHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceE
Q 015179 122 AEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIF 201 (412)
Q Consensus 122 ~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~ 201 (412)
..|++||+.|+-++...|. .|+. .-..|..+++..+.+.+.+..+++. |+=+
T Consensus 118 n~AHrHGV~vlGTFItEw~-eg~~---------------~c~~~La~~es~~~~~e~L~~l~~~--------fgFd---- 169 (526)
T KOG2331|consen 118 NTAHRHGVKVLGTFITEWD-EGKA---------------TCKEFLATEESVEMTVERLVELARF--------FGFD---- 169 (526)
T ss_pred chhhhcCceeeeeEEEEec-cchh---------------HHHHHHccchhHHHHHHHHHHHHHH--------hCCc----
Confidence 3589999999999988774 2221 1123445566677788888888887 6655
Q ss_pred Eeee--ccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 202 AWEL--MNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 202 ~wel--~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
+|-+ -|-.... .-....+++..+.+..++.-|+-+|+
T Consensus 170 GWLiNiEn~i~~~---~i~~l~~F~~~Lt~~~~~~~p~~~Vi 208 (526)
T KOG2331|consen 170 GWLINIENKIDLA---KIPNLIQFVSHLTKVLHSSVPGGLVI 208 (526)
T ss_pred eEEEEeeeccChh---hCccHHHHHHHHHHHHhhcCCCceEE
Confidence 3533 3433321 11347889999999999999988875
No 247
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=29.88 E-value=60 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=10.0
Q ss_pred HHHHHHHH-HHHHhHHHhhh
Q 015179 10 FIFLALLV-IIYLNTYIYMA 28 (412)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~ 28 (412)
||+++|++ +++++++.+++
T Consensus 6 ~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 55555544 44666655544
No 248
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=29.83 E-value=5.1e+02 Score=24.88 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=64.0
Q ss_pred eeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015179 54 NGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVIL 133 (412)
Q Consensus 54 ~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil 133 (412)
.|+|++-.+.. ...-.+..+.+++.|+..||++.- ++ .+|.....-||.+++
T Consensus 1 iGvnyG~~~~n------lp~p~~vv~l~ks~~i~~vri~d~---------------~~-------~iL~a~a~S~i~v~v 52 (310)
T PF00332_consen 1 IGVNYGRVGNN------LPSPCKVVSLLKSNGITKVRIYDA---------------DP-------SILRAFAGSGIEVMV 52 (310)
T ss_dssp EEEEE---SSS---------HHHHHHHHHHTT--EEEESS-----------------H-------HHHHHHTTS--EEEE
T ss_pred CeEeccCccCC------CCCHHHHHHHHHhcccccEEeecC---------------cH-------HHHHHHhcCCceeee
Confidence 37887543211 124456778889999999999411 22 567777889999999
Q ss_pred ecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCC
Q 015179 134 SLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPT 213 (412)
Q Consensus 134 ~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~ 213 (412)
.+.+. . ...- ...+.....+++.=+.. |...-.|...-++||.-...
T Consensus 53 ~vpN~--~------l~~l-----------------a~~~~~A~~Wv~~nv~~--------~~~~~~i~~i~VGnEv~~~~ 99 (310)
T PF00332_consen 53 GVPNE--D------LASL-----------------ASSQSAAGSWVRTNVLP--------YLPAVNIRYIAVGNEVLTGT 99 (310)
T ss_dssp EE-GG--G------HHHH-----------------HHHHHHHHHHHHHHTCT--------CTTTSEEEEEEEEES-TCCS
T ss_pred ccChH--H------HHHh-----------------ccCHHHHhhhhhhcccc--------cCcccceeeeecccccccCc
Confidence 98741 0 0000 11222333444443333 55555688889999987643
Q ss_pred CCChhHHHHHHHHHHHHHHhcCC--CCeEEe
Q 015179 214 DPSGTLLQEWIKEMAAHVKSIDN--HHLLEV 242 (412)
Q Consensus 214 ~~~~~~~~~~~~~~~~~Ir~~dp--~~lV~~ 242 (412)
. ...+..-.+.+..++++..- ..-|++
T Consensus 100 ~--~~~lvpAm~ni~~aL~~~~L~~~IkVst 128 (310)
T PF00332_consen 100 D--NAYLVPAMQNIHNALTAAGLSDQIKVST 128 (310)
T ss_dssp G--GGGHHHHHHHHHHHHHHTT-TTTSEEEE
T ss_pred c--ceeeccHHHHHHHHHHhcCcCCcceecc
Confidence 2 22233444566666666443 334443
No 249
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=29.73 E-value=79 Score=19.80 Aligned_cols=16 Identities=25% Similarity=0.743 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 015179 7 FNSFIFLALLVIIYLN 22 (412)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (412)
+.+|++++++.++|++
T Consensus 16 ~llflv~imliif~f~ 31 (43)
T PF11395_consen 16 FLLFLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666654
No 250
>COG2968 Uncharacterized conserved protein [Function unknown]
Probab=29.48 E-value=3.9e+02 Score=24.70 Aligned_cols=98 Identities=13% Similarity=0.069 Sum_probs=51.7
Q ss_pred CCCEEecCCc-EE-ECCEEEEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCE--EEecccc-CCCCcccccCCCC
Q 015179 34 QEFAQTNGSH-FA-VNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNI--ARTWAFS-DGGYRALQVSPGS 108 (412)
Q Consensus 34 ~~~v~v~g~~-l~-~dG~~~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~--vR~~~~~-~~~~~~~~~~~g~ 108 (412)
...|.|+|.. .. ....-..=.||..-...-...-...-+.+.+.++.|++.|+-- ||.-.+. +.-|..-+..+.+
T Consensus 35 ~~~itvSG~G~~~~~pD~A~lsl~V~~~a~tA~~A~~~n~~r~~~V~aaLk~agi~~rdiqTs~~~i~P~Y~y~~~~~~~ 114 (243)
T COG2968 35 PPTITVSGEGEVTAVPDMATLSLGVVVQAKTAAEAKKANAERMAAVIAALKKAGIAKKDIQTSNLSVQPQYDYPENGEPE 114 (243)
T ss_pred CceEEEEeeEEEecCCceEEEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHcCCccccceecceeeccceecCCCCCce
Confidence 4468888853 33 2445555566654211000000013457888999999999965 6662221 0001110111111
Q ss_pred -----------CChhHHHHHHHHHHHHHHcCCEE
Q 015179 109 -----------YNEDTFKALDFVVAEAREYGVYV 131 (412)
Q Consensus 109 -----------~~~~~l~~ld~~i~~a~~~Gi~v 131 (412)
+.-..++.+-++||.+-++|+-=
T Consensus 115 ltGY~asn~v~V~v~dl~klg~ilD~av~~Ganq 148 (243)
T COG2968 115 LTGYRASNTVEVTVRDLDKLGELLDEAVKAGANQ 148 (243)
T ss_pred EEEEEeeeeEEEEEcchhHHHHHHHHHHHcCccc
Confidence 11234888999999999999653
No 251
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=29.36 E-value=3e+02 Score=26.19 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+...-+.||++|=+ |++--++ ++-++.-.++++.|+++|+-|=.+|-.
T Consensus 90 i~~ai~~GFtSVM~----DgS~lp~--------eeNi~~T~evv~~Ah~~gv~VEaElG~ 137 (286)
T PRK12738 90 IRRKVHAGVRSAMI----DGSHFPF--------AENVKLVKSVVDFCHSQDCSVEAELGR 137 (286)
T ss_pred HHHHHHcCCCeEee----cCCCCCH--------HHHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 44444679998877 3332222 344778889999999999999999863
No 252
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=29.31 E-value=1.5e+02 Score=27.20 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++.++.+++.|++.+=+... .++.++++++.|+++||..++-+.
T Consensus 93 ~~~fi~~~~~aG~~giiipDl------------------~~ee~~~~~~~~~~~g~~~i~~i~ 137 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL------------------PPEEAEEFREAAKEYGLDLIFLVA 137 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC------------------CHHHHHHHHHHHHHcCCcEEEEeC
Confidence 466788888888886655211 135778999999999999888664
No 253
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=29.26 E-value=5.6e+02 Score=25.14 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.++++|+|.|-+ .....+...+. .-+. ....+.+.+.++.+++.|+. +.+++.
T Consensus 99 ~~e~l~~l~~~G~~rvsi-GvqS~~~~~l~-~l~r--~~~~~~~~~~i~~l~~~g~~~v~~dli 158 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISL-GVQTFNDELLK-KIGR--THNEEDVYEAIANAKKAGFDNISIDLI 158 (377)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCHHHHH-HcCC--CCCHHHHHHHHHHHHHcCCCcEEEeee
Confidence 467899999999996655 33211111111 1111 12356778899999999986 556664
No 254
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=29.09 E-value=96 Score=29.29 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=25.1
Q ss_pred ceEEeeeccCCCCCCCC----ChhHHHHHHHHHHHHHHhc-CCCCeEEecc
Q 015179 199 TIFAWELMNEARCPTDP----SGTLLQEWIKEMAAHVKSI-DNHHLLEVGL 244 (412)
Q Consensus 199 ~v~~wel~NEp~~~~~~----~~~~~~~~~~~~~~~Ir~~-dp~~lV~~g~ 244 (412)
.|-+|+|+-|....... ..=...+.++++++.+|++ .|...|+.+.
T Consensus 19 gVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~ilG~~~kitYAA 69 (299)
T PF13547_consen 19 GVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAILGPGTKITYAA 69 (299)
T ss_pred CCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 45667777777653211 0001233457777777774 4666666653
No 255
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=29.03 E-value=4.5e+02 Score=25.30 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=44.8
Q ss_pred ccCCCceEEeeeccCCCCCC----CC---ChhHHHHHHHHHHHHHHhcC-CCCeEEecc-ccccCCCCCccccCCCCCCC
Q 015179 194 YKDDPTIFAWELMNEARCPT----DP---SGTLLQEWIKEMAAHVKSID-NHHLLEVGL-EGFYGESVPERQKYNPNNTP 264 (412)
Q Consensus 194 y~~~p~v~~wel~NEp~~~~----~~---~~~~~~~~~~~~~~~Ir~~d-p~~lV~~g~-~g~~~~~~~~~~~~~p~~~~ 264 (412)
+++...-+.|=.+.|.+..- .. +++.+.+.++.+.+.+|... .+.+|.+=. .+.. .....|.|+
T Consensus 146 l~~~~vPVl~Rp~HE~nG~WfwWg~~~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~~~~~----~~~~~yYPG--- 218 (311)
T PF02156_consen 146 LKDAGVPVLFRPFHEMNGGWFWWGAKGHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSPNGSR----DDAAEYYPG--- 218 (311)
T ss_dssp HHCTTS-EEEEESTSTTSSSSTTSTTSTCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-EBTTS----SCTCTT------
T ss_pred hhcCCCeEEEeehhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHHhccCCceEEEEecCCCCC----CCccccCCC---
Confidence 55543334488999998532 11 25779999999999999754 466776511 1100 000122332
Q ss_pred CCCccccccCCCCcceEeeecCCC
Q 015179 265 VGTDFITNNQIPDVDFATIHIYPE 288 (412)
Q Consensus 265 ~g~d~~~~~~~~~iDv~s~H~Y~~ 288 (412)
...+|++++-.|..
T Consensus 219 ----------D~yVDivG~D~Y~~ 232 (311)
T PF02156_consen 219 ----------DDYVDIVGVDVYND 232 (311)
T ss_dssp ----------TTT-SEEEEEEEES
T ss_pred ----------CCeEEEEEEeCCCC
Confidence 35689999999986
No 256
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=28.97 E-value=96 Score=30.67 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHc-CCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 72 AKVTAAFQQATKY-GMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 72 ~~~~~~l~~l~~~-G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
..|+-||+.+.++ .=|++-+.+.+ +-.|-..+|+. +.|.++++.|+++||.||-|=--.|..||+.+.
T Consensus 183 ~~weIDL~~veal~DENT~AivviN-----P~NPcGnVys~---~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pf 251 (447)
T KOG0259|consen 183 KDWEIDLDGVEALADENTVAIVVIN-----PNNPCGNVYSE---DHLKKIAETAKKLGIMVIADEVYGHTVFGDKPF 251 (447)
T ss_pred ccceechHHHHHhhccCeeEEEEeC-----CCCCCcccccH---HHHHHHHHHHHHhCCeEEehhhcceeecCCCCc
Confidence 4667777776644 45888884433 11233356775 456778999999999999986544456676553
No 257
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=28.51 E-value=2.7e+02 Score=26.58 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=39.6
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCC--CCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPG--SYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
+.++..+.++.+++.|.+.|.++.-. +...+. ..++ .++ .+.+.++++.|+++|+.+.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g-~~~~~~-~~~~~~~~~---~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATG-GVLSPG-DPPPDTQFS---EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccC-CcCCCC-CCCcccCcC---HHHHHHHHHHHHHcCCEEEEEe
Confidence 35678889999999999999996411 000000 0111 233 3567789999999999876543
No 258
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.33 E-value=3.2e+02 Score=25.90 Aligned_cols=48 Identities=25% Similarity=0.249 Sum_probs=34.4
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+...-+.||++|=+ |++--++ ++-++.-.++++.|+.+|+-|=.+|-.
T Consensus 90 i~~ai~~GftSVM~----DgS~lp~--------eeNi~~T~~vv~~Ah~~gvsVEaElG~ 137 (284)
T PRK12857 90 VMKCIRNGFTSVMI----DGSKLPL--------EENIALTKKVVEIAHAVGVSVEAELGK 137 (284)
T ss_pred HHHHHHcCCCeEEE----eCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEeee
Confidence 44444569998877 3332222 344778889999999999999999863
No 259
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=28.24 E-value=93 Score=30.64 Aligned_cols=60 Identities=15% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++.+.+.|+..||++.-.. ....+..-+.-.++.++.+.+.++.|+++|+.|.+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~S--d~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVS--DLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccC--HHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 5678888899999999954210 00111111222356788899999999999999887664
No 260
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.18 E-value=3.7e+02 Score=25.52 Aligned_cols=50 Identities=18% Similarity=0.193 Sum_probs=35.5
Q ss_pred HHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 76 AAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 76 ~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+...-+.||++|=+ |++--++ ++-++.-.++++.|+.+|+-|=.+|-.
T Consensus 88 e~i~~Ai~~GftSVM~----DgS~l~~--------eeNi~~T~~vv~~Ah~~gv~VEaElG~ 137 (284)
T PRK09195 88 DDIAQKVRSGVRSVMI----DGSHLPF--------AQNISLVKEVVDFCHRFDVSVEAELGR 137 (284)
T ss_pred HHHHHHHHcCCCEEEe----CCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 3455555779998877 3332222 344777789999999999999999863
No 261
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=28.11 E-value=1.7e+02 Score=27.23 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++++.+.+.|+..||+.... + ....+.+.++.++++|+.+.+.+.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~--------------s--~~~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHC--------------T--EADVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEech--------------h--hHHHHHHHHHHHHHCCCeEEEEEE
Confidence 366888889999999994321 1 134677899999999999999885
No 262
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.64 E-value=1.3e+02 Score=31.04 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
++.++.|++.|++.|-+ .+..++...+..- ++ ....+.+.+.++.++++||.+.+++.
T Consensus 287 ~ell~~l~~aG~~~v~i-GiES~~~~~L~~~-~K--~~t~~~~~~ai~~l~~~Gi~~~~~~I 344 (497)
T TIGR02026 287 ADILHLYRRAGLVHISL-GTEAAAQATLDHF-RK--GTTTSTNKEAIRLLRQHNILSEAQFI 344 (497)
T ss_pred HHHHHHHHHhCCcEEEE-ccccCCHHHHHHh-cC--CCCHHHHHHHHHHHHHCCCcEEEEEE
Confidence 45567777777775555 3332211111100 10 11245667889999999999877664
No 263
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.54 E-value=2.8e+02 Score=25.10 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
....+..++.+++.|+..+|++.-.+ -...+..-+.-.++.++.+.++++.++++|+.+.+.+.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~ 129 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVS--DLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE 129 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETS--HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHhhHhccCCEEEecCccc--HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc
Confidence 45677778888899999999943210 00011111222356788999999999999999977764
No 264
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=27.50 E-value=52 Score=20.52 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=4.8
Q ss_pred HHHHHhHHHhh
Q 015179 17 VIIYLNTYIYM 27 (412)
Q Consensus 17 ~~~~~~~~~~~ 27 (412)
+++|+++++++
T Consensus 6 ~l~CLA~aavF 16 (37)
T PF11131_consen 6 FLICLAAAAVF 16 (37)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 265
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=27.47 E-value=6e+02 Score=24.91 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=33.2
Q ss_pred HHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 79 QQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 79 ~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
....+.||++|=+ |++-.++ ++-++.-.++++.|+.+|+-|=.+|-.
T Consensus 117 ~~a~~~GftSVMi----DgS~lp~--------eENI~~TkevVe~Ah~~gvsVEaElG~ 163 (345)
T cd00946 117 KQHGEPLFSSHML----DLSEEPL--------EENIEICKKYLERMAKINMWLEMEIGI 163 (345)
T ss_pred HHhccCCCceEEe----eCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 3334669998855 3332222 334777789999999999999999863
No 266
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.33 E-value=1.4e+02 Score=28.60 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCC--CCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPG--SYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g--~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.+.++.+++.|+..=-+ ... .+| +..-| .+|++.|..+..+++.++++|+++++-+.
T Consensus 28 s~~~v~~~~~~~~~~~iP~d~i-~iD-~~w---~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 28 NQETVLNYAQEIIDNGFPNGQI-EID-DNW---ETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred CHHHHHHHHHHHHHcCCCCCeE-EeC-CCc---cccCCccccChhhCCCHHHHHHHHHHCCCeEEEEEC
Confidence 4578899999999999753333 222 223 22222 45666777789999999999999999876
No 267
>PLN02591 tryptophan synthase
Probab=27.22 E-value=2e+02 Score=26.68 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-.++.++.+++.|++.+=+.... ++..+.+.+.|+++||..++-+.
T Consensus 94 G~~~F~~~~~~aGv~GviipDLP------------------~ee~~~~~~~~~~~gl~~I~lv~ 139 (250)
T PLN02591 94 GIDKFMATIKEAGVHGLVVPDLP------------------LEETEALRAEAAKNGIELVLLTT 139 (250)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC------------------HHHHHHHHHHHHHcCCeEEEEeC
Confidence 45677888888888877662111 45667888889999999888663
No 268
>PRK13999 potassium-transporting ATPase subunit C; Provisional
Probab=27.05 E-value=95 Score=27.75 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=12.0
Q ss_pred CChhHHHHHHHHHHHHHHc
Q 015179 109 YNEDTFKALDFVVAEAREY 127 (412)
Q Consensus 109 ~~~~~l~~ld~~i~~a~~~ 127 (412)
-+++..+++.+-++...+.
T Consensus 102 snp~L~~~v~~r~~~~~~~ 120 (201)
T PRK13999 102 TSKALADRVKEDVDALKAE 120 (201)
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 4677777777766654443
No 269
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.01 E-value=1.8e+02 Score=27.17 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEec
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSL 135 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l 135 (412)
-.++.++.+++.|++.+=+... -++..+.+++.|+++||..++-+
T Consensus 105 G~e~f~~~~~~aGvdGviipDL------------------p~ee~~~~~~~~~~~gl~~I~lv 149 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDL------------------PPEEAEELRAAAKKHGLDLIFLV 149 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCC------------------CHHHHHHHHHHHHHcCCcEEEEe
Confidence 3456677777777776666211 14677899999999999998644
No 270
>PRK04946 hypothetical protein; Provisional
Probab=26.83 E-value=1.5e+02 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 110 NEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 110 ~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-+++.+.|+.+|+.|...|+..+..+|
T Consensus 105 ~eeA~~~L~~fl~~a~~~g~r~v~IIH 131 (181)
T PRK04946 105 QLQAKQELGALIAACRKEHVFCACVMH 131 (181)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 467889999999999999999999998
No 271
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=26.78 E-value=5.1e+02 Score=27.80 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=31.5
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+.+++.|++.|=+ .+++.. ..|.+. =+.+.+=+..|.++||.+|+++-
T Consensus 474 a~mLkd~G~~~vii-GHSERR--------~~f~Et-d~~V~~K~~~al~~GL~pIvCVG 522 (645)
T PRK13962 474 GPMLAEIGVEYVII-GHSERR--------QYFGET-DELVNKKVLAALKAGLTPILCVG 522 (645)
T ss_pred HHHHHHcCCCEEEE-Cccccc--------CCcCcc-hHHHHHHHHHHHHCCCEEEEEcC
Confidence 56788888888888 555211 112221 12233444889999999999985
No 272
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=26.75 E-value=4.1e+02 Score=25.59 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+...-+.||++|=+ |++--++ ++-++.-.++++.|+.+|+-|=.+|-.
T Consensus 89 ~i~~ai~~GftSVM~----DgS~l~~--------eeNi~~T~~vve~Ah~~gv~VEaElG~ 137 (307)
T PRK05835 89 SCEKAVKAGFTSVMI----DASHHAF--------EENLELTSKVVKMAHNAGVSVEAELGR 137 (307)
T ss_pred HHHHHHHcCCCEEEE----eCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 344555679998877 3332122 344777889999999999999999863
No 273
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=26.65 E-value=71 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCCeEEec
Q 015179 224 IKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 224 ~~~~~~~Ir~~dp~~lV~~g 243 (412)
+.++...|++.||+..|++.
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~ 48 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVS 48 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE-
T ss_pred HHHHHHHHHHhCCCEEEEEE
Confidence 57888999999999999874
No 274
>KOG4731 consensus Protein predicted to be involved in spindle matrix formation, contains DM13, DoH, and DOMON domains [Cell cycle control, cell division, chromosome partitioning]
Probab=26.58 E-value=87 Score=31.53 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhHHHhhhcC--CCCCCCE-----EecCCcEEECCEEEEEeeeec
Q 015179 9 SFIFLALLVIIYLNTYIYMAKA--NPNQEFA-----QTNGSHFAVNGKPLYLNGFNA 58 (412)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v-----~v~g~~l~~dG~~~~~~GvN~ 58 (412)
+++++.|.+++|.++...++.+ ....|-+ +|+|.-+.+|-..++++++|+
T Consensus 9 l~l~~ll~f~icya~~~~~aepy~G~~lGels~lehqVsG~Vf~Vns~t~qI~nF~~ 65 (512)
T KOG4731|consen 9 LLLLVLLIFLICYANGEEAAEPYYGVYLGELSSLEHQVSGDVFAVNSTTFQIVNFNY 65 (512)
T ss_pred HHHHHHHHHHhhhcccccccccccceeeeeccccccccceeEEEEeeeEEEEEEecc
Confidence 3445555566787777544441 1111222 577777888999999999987
No 275
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=26.57 E-value=3.1e+02 Score=26.89 Aligned_cols=61 Identities=10% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHcC----CCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYG----MNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G----~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++.++..+.++..+ .-.|++-.|+ ++...+..|.+..-+.+.++.+.+.++|+.+.+.-.
T Consensus 263 ~e~a~~L~~~lk~l~~~~~~~~VnLIPyn-----~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~ 327 (347)
T PRK14453 263 KEHAEAVVGLLRNRGSWEHLYHVNLIPYN-----STDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQ 327 (347)
T ss_pred HHHHHHHHHHHhhccccCCcceEEEecCC-----CCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 467778888888763 3445553343 221111123334456888999999999999988753
No 276
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=26.47 E-value=3.9e+02 Score=25.42 Aligned_cols=125 Identities=23% Similarity=0.222 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhC
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERG 156 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g 156 (412)
.+...-+.||++|=+ |++-.++ ++-++.-.++++.|+.+|+-|=.+|-. .||.. .+
T Consensus 92 ~i~~ai~~GftSVMi----DgS~lp~--------eeNi~~T~~vv~~Ah~~gv~VEaElG~----vgg~e--------~~ 147 (288)
T TIGR00167 92 DCAQAVKAGFSSVMI----DGSHEPF--------EENIELTKKVVERAHKMGVSVEAELGT----LGGEE--------DG 147 (288)
T ss_pred HHHHHHHcCCCEEEe----cCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEEee----ccCcc--------CC
Confidence 344445679998877 3432222 344777889999999999999999863 33321 11
Q ss_pred CCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCC
Q 015179 157 QSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDN 236 (412)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp 236 (412)
.........|++|+- .+.++++ - ....++..++|--..+.. .+. .+--++.+.|++.-+
T Consensus 148 ~~~~~~~~~~T~pee-------a~~Fv~~--------T--gvD~LAvaiGt~HG~y~~-~p~---~Ld~~~L~~I~~~v~ 206 (288)
T TIGR00167 148 VSVADESALYTDPEE-------AKEFVKL--------T--GVDSLAAAIGNVHGVYKG-EPK---GLDFERLEEIQKYVN 206 (288)
T ss_pred cccccccccCCCHHH-------HHHHHhc--------c--CCcEEeeccCccccccCC-CCC---ccCHHHHHHHHHHhC
Confidence 111122457888863 2334444 1 123566778776555432 111 011123334444333
Q ss_pred CCeEEecccc
Q 015179 237 HHLLEVGLEG 246 (412)
Q Consensus 237 ~~lV~~g~~g 246 (412)
--+|.-|++|
T Consensus 207 vPLVlHGgSG 216 (288)
T TIGR00167 207 LPLVLHGGSG 216 (288)
T ss_pred CCEEEeCCCC
Confidence 4577766543
No 277
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=26.45 E-value=5.2e+02 Score=23.89 Aligned_cols=100 Identities=14% Similarity=0.207 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCC----hhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 72 AKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYN----EDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 72 ~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~----~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
...++.-+.+++.|+...-+..... . .+. ++.-+ +..++.+.+.++.|++.|...+. ++. ..
T Consensus 57 ~~~~~l~~~l~~~gl~i~~~~~~~~--~-~~~--~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~-~~~------~~-- 122 (283)
T PRK13209 57 EQRLALVNALVETGFRVNSMCLSAH--R-RFP--LGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQ-LAG------YD-- 122 (283)
T ss_pred HHHHHHHHHHHHcCCceeEEecccc--c-ccC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-ECC------cc--
Confidence 4556666667777877655421100 0 010 11112 34677899999999999999775 331 00
Q ss_pred hhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeecc
Q 015179 148 YVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMN 207 (412)
Q Consensus 148 ~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~N 207 (412)
.|. + ..+++..+.+.+.++.+++. -+.+.-.+++|..+
T Consensus 123 --~~~---~---------~~~~~~~~~~~~~l~~l~~~--------A~~~GV~i~iE~~~ 160 (283)
T PRK13209 123 --VYY---E---------QANNETRRRFIDGLKESVEL--------ASRASVTLAFEIMD 160 (283)
T ss_pred --ccc---c---------ccHHHHHHHHHHHHHHHHHH--------HHHhCCEEEEeecC
Confidence 000 0 01245556677777777775 44455567777653
No 278
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.33 E-value=6.3e+02 Score=24.82 Aligned_cols=63 Identities=16% Similarity=0.286 Sum_probs=44.1
Q ss_pred CcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 69 STKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 69 ~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
++++...+.-+.+++.|.+.+|--.|.. -.+|..|..-.-+.++.+-+.+++.||.++-++++
T Consensus 112 Es~eq~l~~A~~lk~~g~~~~r~g~~kp------Rtsp~sf~G~g~~gl~~L~~~~~e~Gl~~~tev~d 174 (352)
T PRK13396 112 ENEEMIVETAKRVKAAGAKFLRGGAYKP------RTSPYAFQGHGESALELLAAAREATGLGIITEVMD 174 (352)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeeeecC------CCCCcccCCchHHHHHHHHHHHHHcCCcEEEeeCC
Confidence 3567888888999999999999733331 11233333223455667777899999999999985
No 279
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.20 E-value=2.3e+02 Score=26.38 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+..+...+.+|.+.|=+ ... .+ + -+.+..+++.|++.||.+++++|+
T Consensus 121 ~~QI~eA~~~GADaVLL-I~~-----~L-------~---~~~l~~l~~~a~~lGle~lVEVh~ 167 (254)
T PF00218_consen 121 PYQIYEARAAGADAVLL-IAA-----IL-------S---DDQLEELLELAHSLGLEALVEVHN 167 (254)
T ss_dssp HHHHHHHHHTT-SEEEE-EGG-----GS-------G---HHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHcCCCEeeh-hHH-----hC-------C---HHHHHHHHHHHHHcCCCeEEEECC
Confidence 34566777888888777 322 11 1 245789999999999999999995
No 280
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=26.03 E-value=1.2e+02 Score=29.59 Aligned_cols=114 Identities=13% Similarity=0.221 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhh
Q 015179 71 KAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVE 150 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~ 150 (412)
.+++.+.++.+++.++-.==+| + |.+|.. .-..-.+|++.|....++++.+++.|+++++.++..-. +|. .
T Consensus 23 ~~ev~~v~~~~r~~~IP~D~i~-l-Didy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~-~g~-----~ 93 (332)
T cd06601 23 RSDLEEVVEGYRDNNIPLDGLH-V-DVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS-YGG-----G 93 (332)
T ss_pred HHHHHHHHHHHHHcCCCCceEE-E-cCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee-cCc-----c
Confidence 4678889999999888532231 1 221210 00112345566666789999999999999998763211 111 1
Q ss_pred hHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccCCCceEEeeeccCCCC
Q 015179 151 WARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 211 (412)
Q Consensus 151 w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~ 211 (412)
|.. .+ .-.+ |++|++++.+.+..+.+.+ .+ --..|.=+|||..
T Consensus 94 ~~~-~~----~~pD-ftnp~ar~wW~~~~~~l~~---------~G---v~~~W~DmnEp~~ 136 (332)
T cd06601 94 LGS-PG----LYPD-LGRPDVREWWGNQYKYLFD---------IG---LEFVWQDMTTPAI 136 (332)
T ss_pred CCC-Cc----eeeC-CCCHHHHHHHHHHHHHHHh---------CC---CceeecCCCCccc
Confidence 110 11 1122 4578888877666655543 11 1124777888864
No 281
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.93 E-value=1.9e+02 Score=26.59 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+++++.+++.|+..||+.... +-...+.+-+.=.+..++.+...++.++++|+.+.+.+.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~--s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 136 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSA--SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLE 136 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEec--CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 567999999999999994321 000001100111245688899999999999999999885
No 282
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=25.91 E-value=1.1e+02 Score=29.56 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCccccc-C--CCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQV-S--PGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~-~--~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+++.+.++.+++.|+..==++ +. ..| ... . .-.+|++.|....++|+.++++|+++++.++
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~-lD-~~~--~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIV-QD-WFY--WPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEE-Ee-chh--hcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEec
Confidence 35678999999999987543331 21 111 111 1 1235666777788999999999999999875
No 283
>PRK14003 potassium-transporting ATPase subunit C; Provisional
Probab=25.78 E-value=89 Score=27.78 Aligned_cols=22 Identities=9% Similarity=0.114 Sum_probs=16.6
Q ss_pred CCCChhHHHHHHHHHHHHHHcC
Q 015179 107 GSYNEDTFKALDFVVAEAREYG 128 (412)
Q Consensus 107 g~~~~~~l~~ld~~i~~a~~~G 128 (412)
+.-+++..+++.+-++...+.+
T Consensus 96 ~psnp~l~~~v~~r~~~~~~~~ 117 (194)
T PRK14003 96 APSNPALIERIKEEANRLQDAG 117 (194)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC
Confidence 3347788888888888877777
No 284
>PRK12999 pyruvate carboxylase; Reviewed
Probab=25.65 E-value=2.5e+02 Score=32.35 Aligned_cols=64 Identities=22% Similarity=0.281 Sum_probs=43.3
Q ss_pred EEEeeeecccccccCCCcCcHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE
Q 015179 51 LYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY 130 (412)
Q Consensus 51 ~~~~GvN~~~~~~~~~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~ 130 (412)
..++|.|.......+. ...++.++..++.|+..+|++... +. ++.+...++.+++.|..
T Consensus 611 ~l~Rg~n~vgy~~yp~-----~v~~~~i~~a~~~Gid~~rifd~l--------------nd--~~~~~~~i~~vk~~g~~ 669 (1146)
T PRK12999 611 MLLRGSNAVGYTNYPD-----NVVRAFVREAAAAGIDVFRIFDSL--------------NW--VENMRVAIDAVRETGKI 669 (1146)
T ss_pred EEecccccccccCCCc-----hHHHHHHHHHHHcCCCEEEEeccC--------------Ch--HHHHHHHHHHHHHcCCe
Confidence 3468888744322221 356667999999999999995311 21 56788888999988976
Q ss_pred EEEec
Q 015179 131 VILSL 135 (412)
Q Consensus 131 vil~l 135 (412)
+.+.+
T Consensus 670 ~~~~i 674 (1146)
T PRK12999 670 AEAAI 674 (1146)
T ss_pred EEEEE
Confidence 54444
No 285
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=25.62 E-value=3.7e+02 Score=28.93 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCCEEEecccc---CCCCcccccCC--CCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFS---DGGYRALQVSP--GSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~---~~~~~~~~~~~--g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
..+..++.|+.|++.|+++|-+--+. .+. ..+.+.. =+||+...+.+..++..++++|+...+=+..
T Consensus 70 spe~Fe~QL~~Lk~nGY~~VSL~el~~~~~g~-~~LP~KaV~LTFDDGy~sny~~AlPILKkyg~pATfFvVg 141 (672)
T PRK14581 70 RSSALNEQFVWLRDNGYHVVSVDQILAARNGG-PTLPDKAVLLTFDDGYSSFYRRVYPLLKAYKWSAVLAPVG 141 (672)
T ss_pred CHHHHHHHHHHHHHCcCEEecHHHHHHHHhcC-CCCCCCeEEEEEEcCCcchHHHHHHHHHHcCCCEEEEEec
Confidence 35789999999999999999882121 111 0111100 0266666677889999999999997765433
No 286
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=25.60 E-value=1.4e+02 Score=28.06 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCCEEEeccc-cCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAF-SDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~-~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++++.+.+.|+..|+++.- ++. ..+.+-+.-.+..++.+.+.++.++++|+.+.+.+..
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~---~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~ 136 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASET---FSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVST 136 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH---HHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35788899999999999432 110 1111122223567888999999999999999988763
No 287
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=25.44 E-value=6e+02 Score=24.24 Aligned_cols=49 Identities=10% Similarity=0.191 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhc
Q 015179 115 KALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTR 185 (412)
Q Consensus 115 ~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r 185 (412)
..+.+-|..|+++|++|++.+.. .. +. ....+++.++.|.+.+..+++.
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-------~~---------~~------~~~~~~~~~~~fa~sl~~~~~~ 108 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-------AN---------GH------VDLNHTAQEDNFVDSIVAIIKE 108 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-------CC---------Cc------cccCCHHHHHHHHHHHHHHHHH
Confidence 45667788899999999998742 10 00 0123466677777777777765
No 288
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=25.37 E-value=1.9e+02 Score=23.19 Aligned_cols=44 Identities=27% Similarity=0.445 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVIL 133 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil 133 (412)
..+...+.++.+.+.|+. ++|.+. |..+ +++++.|+++||.++-
T Consensus 64 ~~~~~~~~v~~~~~~g~~--~v~~~~-----------g~~~-------~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALGVK--AVWLQP-----------GAES-------EELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT-S--EEEE-T-----------TS---------HHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcCCC--EEEEEc-----------chHH-------HHHHHHHHHcCCEEEe
Confidence 357889999999999988 443332 1112 4788999999999863
No 289
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=25.35 E-value=1.1e+02 Score=27.15 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHHHHcC
Q 015179 110 NEDTFKALDFVVAEAREYG 128 (412)
Q Consensus 110 ~~~~l~~ld~~i~~a~~~G 128 (412)
+++..+++.+-++...+++
T Consensus 91 n~~l~~~v~~~~~~~~~~~ 109 (188)
T PF02669_consen 91 NPELRERVEERIAALRKEN 109 (188)
T ss_pred ChHHHHHHHHHHHHHHhhc
Confidence 5666667766666555444
No 290
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=25.20 E-value=1.3e+02 Score=28.38 Aligned_cols=61 Identities=13% Similarity=0.082 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++++...+.|+..|-++ ++ .+-...+.+-+.-.++.++.+.++++.|+++|++|-+.+.+
T Consensus 77 ~~die~A~~~g~~~v~i~-~s-~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed 137 (279)
T cd07947 77 KEDLKLVKEMGLKETGIL-MS-VSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLED 137 (279)
T ss_pred HHHHHHHHHcCcCEEEEE-Ec-CCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEc
Confidence 356788888899988883 22 10001122223334678999999999999999999888753
No 291
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=25.11 E-value=3.8e+02 Score=25.44 Aligned_cols=50 Identities=26% Similarity=0.269 Sum_probs=35.2
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+++.+.-+.||++|=+ |++-.+++ +-++.-.++++.|++.|+.|=.+|-
T Consensus 88 ~~~~~~ai~~GFsSvMi----DgS~~~~e--------ENi~~tkevv~~ah~~gvsVEaElG 137 (286)
T COG0191 88 FEDCKQAIRAGFSSVMI----DGSHLPFE--------ENIAITKEVVEFAHAYGVSVEAELG 137 (286)
T ss_pred HHHHHHHHhcCCceEEe----cCCcCCHH--------HHHHHHHHHHHHHHHcCCcEEEEec
Confidence 34455556778888777 33322222 3366777999999999999999986
No 292
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.83 E-value=3.1e+02 Score=27.22 Aligned_cols=59 Identities=8% Similarity=-0.043 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCCCE--EEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 71 KAKVTAAFQQATKYGMNI--ARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~N~--vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.+..++..+.++..+-+. |.+-.|+ ++.. ..|.....+.++++.+.+.++||.+.+.-.
T Consensus 296 ~e~a~~L~~llk~~~~~~~~VNLIpyN-----p~~~--~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~ 356 (373)
T PRK14459 296 PWRADLLGKKLHGRGGGWVHVNLIPLN-----PTPG--SKWTASPPEVEREFVRRLRAAGVPCTVRDT 356 (373)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEEccC-----CCCC--CCCcCCCHHHHHHHHHHHHHCCCeEEeeCC
Confidence 456677777777764222 3332222 2111 134555567899999999999999988653
No 293
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=24.68 E-value=1.9e+02 Score=26.56 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=55.4
Q ss_pred hcCCCCCCCEEecCCcEEECCEEEEEeeeeccc--ccccC-------CCcCcHHHHHHHHHHHHHcCCCEEEeccccCCC
Q 015179 28 AKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYW--MLYYA-------GDPSTKAKVTAAFQQATKYGMNIARTWAFSDGG 98 (412)
Q Consensus 28 ~~~~~~~~~v~v~g~~l~~dG~~~~~~GvN~~~--~~~~~-------~~~~~~~~~~~~l~~l~~~G~N~vR~~~~~~~~ 98 (412)
.|....+..++++|.+++-+---+.+.|--... +.++. +...+.+++.+.+....+.|-.++|++.-
T Consensus 9 GAGPGdpdLiTvkg~~ll~~advviYAGSLV~~elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSG---- 84 (254)
T COG2875 9 GAGPGDPDLITVKGQRLLEKADVVIYAGSLVPPELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSG---- 84 (254)
T ss_pred ccCCCCcceeeehHHHHHhhCCEEEECCCcCCHHHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecC----
Confidence 455566778999999887654455555632211 11111 11225677777888888999999999532
Q ss_pred CcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEe
Q 015179 99 YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILS 134 (412)
Q Consensus 99 ~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~ 134 (412)
|+.-+..+-+=++.++++||-.-+.
T Consensus 85 -----------DpsiYgA~~EQm~~L~~~gI~yevv 109 (254)
T COG2875 85 -----------DPSIYGALAEQMRELEALGIPYEVV 109 (254)
T ss_pred -----------ChhHHHHHHHHHHHHHHcCCCeEEe
Confidence 3334444555556667777765443
No 294
>PRK14002 potassium-transporting ATPase subunit C; Provisional
Probab=24.44 E-value=1e+02 Score=27.17 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=11.3
Q ss_pred CChhHHHHHHHHHHHHHH
Q 015179 109 YNEDTFKALDFVVAEARE 126 (412)
Q Consensus 109 ~~~~~l~~ld~~i~~a~~ 126 (412)
-+++..+++.+-++...+
T Consensus 86 snp~L~~~v~~r~~~~~~ 103 (186)
T PRK14002 86 SNPEYLAEVQARIDTFLV 103 (186)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 367777777776665444
No 295
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.25 E-value=7.4e+02 Score=24.90 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEE-EEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYV-ILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~v-il~l~ 136 (412)
.++.++.|+++|+|.|-+ .+...+-..+ ..-+. ....+.+.+.++.+++.|+.+ -+++.
T Consensus 140 t~e~l~~l~~~G~~rvsl-GvQS~~~~~L-~~l~R--~~~~~~~~~ai~~l~~~g~~~i~~dlI 199 (430)
T PRK08208 140 TAEKLALLAARGVNRLSI-GVQSFHDSEL-HALHR--PQKRADVHQALEWIRAAGFPILNIDLI 199 (430)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCHHHH-HHhCC--CCCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 467899999999997776 3321111111 11111 113567778999999999975 46664
No 296
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=24.06 E-value=2.2e+02 Score=26.47 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
-.++.++.+++.|++.|=++.. -++..+.+++.|+++|+.+++-+.
T Consensus 103 G~e~f~~~~~~aGvdgviipDl------------------p~ee~~~~~~~~~~~gl~~i~lv~ 148 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADL------------------PLEESGDLVEAAKKHGVKPIFLVA 148 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCC------------------ChHHHHHHHHHHHHCCCcEEEEEC
Confidence 3456677777777776555211 135567889999999999876553
No 297
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=24.02 E-value=2.7e+02 Score=26.38 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.8
Q ss_pred CCcEEEEecCCCCC
Q 015179 321 KKPILIGEFGKSYK 334 (412)
Q Consensus 321 gkPv~igE~G~~~~ 334 (412)
.|||+.+|+|+..-
T Consensus 206 sKpIwftE~Gcpav 219 (299)
T PF13547_consen 206 SKPIWFTEYGCPAV 219 (299)
T ss_pred CcceEEEecCCchh
Confidence 79999999999876
No 298
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=23.76 E-value=2.8e+02 Score=28.08 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.+.+++.++..++.|.+ +|...+++. -.|....|++ +.+.+++++|+++|+.+|.|=.
T Consensus 183 ~~~~le~a~~~a~~~~~~-vk~lll~nP----~NPtG~~~s~---e~l~~l~~~~~~~~i~lI~DEi 241 (447)
T PLN02607 183 TPQALEAAYQEAEAANIR-VRGVLITNP----SNPLGATVQR---SVLEDILDFVVRKNIHLVSDEI 241 (447)
T ss_pred CHHHHHHHHHHHHHhCCC-eeEEEEeCC----CCCcCcccCH---HHHHHHHHHHHHCCCEEEEecc
Confidence 346677777777776766 565334321 1122224553 4677889999999999999854
No 299
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=23.59 E-value=1.8e+02 Score=28.12 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
.++.++.|.++|++-||+|+- .++....++.-+.|..|.++|+-|-+.+.
T Consensus 123 ~~e~l~~L~eAGLDEIRfHp~-------------~~~~~~~e~~i~~l~~A~~~g~dvG~EiP 172 (353)
T COG2108 123 TEEALKALAEAGLDEIRFHPP-------------RPGSKSSEKYIENLKIAKKYGMDVGVEIP 172 (353)
T ss_pred CHHHHHHHHhCCCCeEEecCC-------------CccccccHHHHHHHHHHHHhCccceeecC
Confidence 356788999999999999641 11233455666788889999999988876
No 300
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.52 E-value=2.2e+02 Score=26.71 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
++.++.|+++|++.|-+ .+. .+...+..-- ....++..-+.++.++++||.+...+.
T Consensus 123 ~e~l~~Lk~aG~~~v~i-~~E-~~~~~~~~i~---~~~s~~~~~~ai~~l~~~Gi~v~~~~i 179 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNH-NLD-TSQEFYSNII---STHTYDDRVDTLENAKKAGLKVCSGGI 179 (296)
T ss_pred HHHHHHHHHcCCCEEEE-ccc-CCHHHHhhcc---CCCCHHHHHHHHHHHHHcCCEEEEeEE
Confidence 67788999999997776 333 2111111100 112355666788899999999776543
No 301
>PRK08187 pyruvate kinase; Validated
Probab=23.46 E-value=2.5e+02 Score=28.99 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=31.4
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHH-H--cCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAR-E--YGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~-~--~Gi~vil~l~ 136 (412)
.+.++.|-+.|+|++|+ -|+-+ +.+.+..+-+.+..+. + +.+.+++|+.
T Consensus 149 ~e~i~~Li~aGmdvaRi-N~SHg------------~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~ 200 (493)
T PRK08187 149 PDFVLRLAERGMDCARI-NCAHD------------DPAAWQAMIGHLRQAERATGRRCKILMDLA 200 (493)
T ss_pred HHHHHHHHHCCCCEEEE-ECCCC------------CHHHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 55789999999999999 55422 3344544444444433 3 4577777774
No 302
>PRK04302 triosephosphate isomerase; Provisional
Probab=23.40 E-value=2.3e+02 Score=25.51 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=35.0
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+.-++.+++.|++.|=+ ..++. ...+..+.+++..|.++||.++++.+
T Consensus 75 ~~~~~~l~~~G~~~vii-~~ser-------------~~~~~e~~~~v~~a~~~Gl~~I~~v~ 122 (223)
T PRK04302 75 HILPEAVKDAGAVGTLI-NHSER-------------RLTLADIEAVVERAKKLGLESVVCVN 122 (223)
T ss_pred hhHHHHHHHcCCCEEEE-ecccc-------------ccCHHHHHHHHHHHHHCCCeEEEEcC
Confidence 34588899999999866 33210 01144578899999999999998776
No 303
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=23.26 E-value=35 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHhHH
Q 015179 4 TRLFNSFIFLALLVIIYLNTY 24 (412)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~ 24 (412)
++.+..++++.+++..|++..
T Consensus 3 Ki~~~~i~~~~~~L~aCQaN~ 23 (46)
T PF02402_consen 3 KIIFIGIFLLTMLLAACQANY 23 (46)
T ss_pred EEEEeHHHHHHHHHHHhhhcc
Confidence 333433333445555677665
No 304
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=23.09 E-value=2.8e+02 Score=25.80 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=32.4
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++....+|.+.|=+ .... .+ -..+.++++.|+++|+.+++++|+
T Consensus 125 qi~~a~~~GAD~VlL-i~~~------------l~---~~~l~~li~~a~~lGl~~lvevh~ 169 (260)
T PRK00278 125 QIYEARAAGADAILL-IVAA------------LD---DEQLKELLDYAHSLGLDVLVEVHD 169 (260)
T ss_pred HHHHHHHcCCCEEEE-Eecc------------CC---HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 466666777776666 2110 11 257889999999999999999995
No 305
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=22.81 E-value=5.4e+02 Score=27.02 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHc---CC-EEEEecc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREY---GV-YVILSLV 136 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~---Gi-~vil~l~ 136 (412)
....+...++.+++.|++-|++|.|-||... . .......|+++.+.+++. |. --|-++.
T Consensus 143 h~~Hl~al~~~a~~~gv~~v~vH~f~DGRDt--~------p~S~~~yl~~l~~~l~~~~~~g~~g~iAsv~ 205 (558)
T PLN02538 143 RLDQLQLLLKGAAERGAKRIRVHVLTDGRDV--P------DGSSVGFVETLEKDLAELREKGCDARIASGG 205 (558)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEcCCCCC--C------cccHHHHHHHHHHHHHHhhcCCCcEEEEEEe
Confidence 4567889999999999999999988877421 1 234566666666666664 76 3555554
No 306
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=22.72 E-value=1.9e+02 Score=28.39 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.+++.|+|.|=+ .....+-..+ ..-+. ....+.+.+.++.++++|+. +.+++.
T Consensus 102 t~e~l~~lk~~G~nrisi-GvQS~~d~vL-~~l~R--~~~~~~~~~ai~~lr~~G~~~v~~dlI 161 (353)
T PRK05904 102 TQSQINLLKKNKVNRISL-GVQSMNNNIL-KQLNR--THTIQDSKEAINLLHKNGIYNISCDFL 161 (353)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCCHHHH-HHcCC--CCCHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 467899999999995555 3221111111 11111 12255677889999999986 777765
No 307
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=22.39 E-value=4.7e+02 Score=26.42 Aligned_cols=22 Identities=23% Similarity=0.224 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHcCCEEEE
Q 015179 112 DTFKALDFVVAEAREYGVYVIL 133 (412)
Q Consensus 112 ~~l~~ld~~i~~a~~~Gi~vil 133 (412)
..-+++.-++++++++.|+|.=
T Consensus 452 GQkKRlAll~AllEeR~Ilv~D 473 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLD 473 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEee
Confidence 3457888899999999998743
No 308
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=22.33 E-value=1.7e+02 Score=18.69 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=13.4
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q 015179 2 LVTRLFNSFIFLALLVIIYL 21 (412)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (412)
|....+.+.|+++++.++..
T Consensus 2 lkSl~fa~iMVPVvma~ilg 21 (41)
T PF10766_consen 2 LKSLAFAVIMVPVVMALILG 21 (41)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44556777888888666543
No 309
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.31 E-value=2.6e+02 Score=24.60 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=33.3
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.++.+.++|.+.|=++... + -..+.++++.|+++|+.+++.+++
T Consensus 68 ~~~~~~~~Gad~i~vh~~~--------------~---~~~~~~~i~~~~~~g~~~~~~~~~ 111 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVA--------------D---DATIKGAVKAAKKHGKEVQVDLIN 111 (206)
T ss_pred HHHHHHHcCCCEEEEeccC--------------C---HHHHHHHHHHHHHcCCEEEEEecC
Confidence 4788889999988774322 1 134578999999999999998764
No 310
>PLN02229 alpha-galactosidase
Probab=22.27 E-value=2.7e+02 Score=28.09 Aligned_cols=77 Identities=12% Similarity=0.143 Sum_probs=44.6
Q ss_pred EeeeecccccccCCCcCcHHHHHHHHHH-----HHHcCCCEEEeccccCCCCccc-ccCCCC--CChhHHH-HHHHHHHH
Q 015179 53 LNGFNAYWMLYYAGDPSTKAKVTAAFQQ-----ATKYGMNIARTWAFSDGGYRAL-QVSPGS--YNEDTFK-ALDFVVAE 123 (412)
Q Consensus 53 ~~GvN~~~~~~~~~~~~~~~~~~~~l~~-----l~~~G~N~vR~~~~~~~~~~~~-~~~~g~--~~~~~l~-~ld~~i~~ 123 (412)
+-|.|-+...... -+++.+.+..+. ++++|.+.|=+-. +|..- ....|. .|++.|- -|..+.+.
T Consensus 64 pmGWnSWn~~~~~---i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDD----gW~~~~rd~~G~l~~d~~rFP~G~k~lady 136 (427)
T PLN02229 64 QMGWNSWNFFACN---INETVIKETADALVSTGLADLGYIHVNIDD----CWSNLKRDSKGQLVPDPKTFPSGIKLLADY 136 (427)
T ss_pred CceEEchhhhCcc---cCHHHHHHHHHHHHHhHHHhCCCEEEEEcC----CcCCCCcCCCCCEEEChhhcCCcHHHHHHH
Confidence 4566654432221 134566777776 4899999877722 23110 111232 2444443 38889999
Q ss_pred HHHcCCEEEEecc
Q 015179 124 AREYGVYVILSLV 136 (412)
Q Consensus 124 a~~~Gi~vil~l~ 136 (412)
.+++||+.=|-..
T Consensus 137 iH~~GlKfGIy~d 149 (427)
T PLN02229 137 VHSKGLKLGIYSD 149 (427)
T ss_pred HHHCCCceEEecc
Confidence 9999999877553
No 311
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=22.22 E-value=1.7e+02 Score=28.57 Aligned_cols=50 Identities=24% Similarity=0.437 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH--cCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE--YGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~--~Gi~vil~l~ 136 (412)
.+.|+.|-+.|+|++|+ -|+.++ .+...+.++.+=+..++ ..+.+++|+.
T Consensus 17 ~e~l~~li~aGm~v~Ri-N~SHg~-----------~e~~~~~i~~iR~a~~~~~~~i~IllDl~ 68 (348)
T PF00224_consen 17 VEVLRKLIEAGMNVARI-NFSHGT-----------HEEHKEIIENIREAEKELGKPIAILLDLK 68 (348)
T ss_dssp HHHHHHHHHHTEEEEEE-ETTSS------------HHHHHHHHHHHHHHHHHTTTS-EEEEEE-
T ss_pred HHHHHHHHHhccEEEEE-eeecCC-----------HHHHHHHHHHHHHHHhccCCceEEEeccC
Confidence 34688888999999999 554221 12233344444344444 3478888885
No 312
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=22.18 E-value=5.5e+02 Score=24.59 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCC-EEEeccccCCCCcccc--cCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 75 TAAFQQATKYGMN-IARTWAFSDGGYRALQ--VSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N-~vR~~~~~~~~~~~~~--~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
++.|+.|+++|++ .|=+ .+..++...+. -+.|. ..+.+-+.++.++++||.+...+.
T Consensus 117 ~e~L~~l~~aG~~~~v~i-G~ES~~d~~L~~~inKg~----t~~~~~~ai~~~~~~Gi~v~~~~i 176 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAV-GLETANDRIREKSINKGS----TFEDFIRAAELARKYGAGVKAYLL 176 (313)
T ss_pred HHHHHHHHHcCCCEEEEE-ecCcCCHHHHHHhhCCCC----CHHHHHHHHHHHHHcCCcEEEEEE
Confidence 6778889999988 3555 33322211121 11221 255677899999999999888775
No 313
>PRK14567 triosephosphate isomerase; Provisional
Probab=22.18 E-value=6.4e+02 Score=23.46 Aligned_cols=50 Identities=6% Similarity=0.023 Sum_probs=34.8
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
-+.|+++|++.+=+ .+++.. ..|.+. -+.+.+-+..|.++||.+|+++-.
T Consensus 78 ~~mLkd~G~~yvii-GHSERR--------~~f~Et-d~~v~~Kv~~al~~gl~pI~CiGE 127 (253)
T PRK14567 78 ARMLEDIGCDYLLI-GHSERR--------SLFAES-DEDVFKKLNKIIDTTITPVVCIGE 127 (253)
T ss_pred HHHHHHcCCCEEEE-Cccccc--------CccCCC-HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 56789999999988 665321 112221 234557778899999999999863
No 314
>PRK13998 potassium-transporting ATPase subunit C; Provisional
Probab=22.10 E-value=1.1e+02 Score=26.89 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=10.6
Q ss_pred CCChhHHHHHHHHHHH
Q 015179 108 SYNEDTFKALDFVVAE 123 (412)
Q Consensus 108 ~~~~~~l~~ld~~i~~ 123 (412)
.-+++..+++.+-++.
T Consensus 95 psnp~l~~~v~~r~~~ 110 (186)
T PRK13998 95 NGNTELIARMKHHVKF 110 (186)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3467777777776663
No 315
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.00 E-value=6.9e+02 Score=23.73 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhccccccccc
Q 015179 114 FKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVA 193 (412)
Q Consensus 114 l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~ 193 (412)
.+.+.+.++.++++||.+..++.- | . +|. +. +.+.+.++.+.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI~-----G-l---------Pge----------t~---e~~~~t~~~l~~--------- 204 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVIL-----G-L---------PGE----------DR---EEMMETAKIVSL--------- 204 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEE-----C-C---------CCC----------CH---HHHHHHHHHHHh---------
Confidence 566778899999999998887652 1 1 010 11 233444444433
Q ss_pred ccCCCceEEeeeccCCCCCCC-------CChhHHHHHHHHHHHHHHhcCCCCeEE
Q 015179 194 YKDDPTIFAWELMNEARCPTD-------PSGTLLQEWIKEMAAHVKSIDNHHLLE 241 (412)
Q Consensus 194 y~~~p~v~~wel~NEp~~~~~-------~~~~~~~~~~~~~~~~Ir~~dp~~lV~ 241 (412)
++-+ .|..+.+.-+|..... -......+++..+...++.++|+..|.
T Consensus 205 l~~d-~i~i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~ 258 (302)
T TIGR01212 205 LDVD-GIKIHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIH 258 (302)
T ss_pred cCCC-EEEEEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEE
Confidence 3222 3444556555653110 001124677888899999999876653
No 316
>PRK14725 pyruvate kinase; Provisional
Probab=21.95 E-value=2.7e+02 Score=29.46 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH---cCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE---YGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~---~Gi~vil~l~ 136 (412)
.+.++.|.+.|+|.+|+ -|+-+ +++.+.++-+.+..+.+ +-+.+++||.
T Consensus 155 ~e~i~~Li~aGmdvaRI-NcAHg------------~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~ 206 (608)
T PRK14725 155 PDLVRRLLAAGMDIARI-NCAHD------------DPEAWRAMIANVRTAEEELGRRCRIAMDLA 206 (608)
T ss_pred HHHHHHHHHcCCCEeee-ECCCC------------CHHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46788999999999999 44411 45667665555555444 4577888874
No 317
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=21.75 E-value=1.7e+02 Score=25.10 Aligned_cols=27 Identities=15% Similarity=0.243 Sum_probs=20.4
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccC
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSD 96 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~ 96 (412)
....+++....|++.....|++-.+.|
T Consensus 67 ~~~~L~~ia~~l~~~~~~~v~I~GhTD 93 (160)
T PRK09967 67 SQQQIQTMAAKLASTGLTHARMDGHTD 93 (160)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 456788888888888878889855653
No 318
>PLN02461 Probable pyruvate kinase
Probab=21.71 E-value=2.4e+02 Score=29.25 Aligned_cols=50 Identities=28% Similarity=0.384 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcC--CEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYG--VYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~G--i~vil~l~ 136 (412)
.+.|+.|-+.|+|.+|+ -|+-++ .+...+.++.+-+.+++.| +-+++|+.
T Consensus 36 ~e~l~~li~aGm~v~Rl-N~SHg~-----------~e~h~~~i~~vr~~~~~~g~~i~Il~Dl~ 87 (511)
T PLN02461 36 VPMLEKLLRAGMNVARF-NFSHGS-----------HEYHQETLDNLRQAMANTGILCAVMLDTK 87 (511)
T ss_pred HHHHHHHHHcCCCEEEE-ECCCCC-----------HHHHHHHHHHHHHHHHHcCCCeEEEeeCC
Confidence 45799999999999999 555221 1233455666666666666 45666664
No 319
>PRK06739 pyruvate kinase; Validated
Probab=21.64 E-value=2.4e+02 Score=27.71 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCEEEecccc
Q 015179 75 TAAFQQATKYGMNIARTWAFS 95 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~ 95 (412)
.+.|+.|-+.|+|.+|+ -|+
T Consensus 16 ~e~l~~Li~aGm~v~Rl-NfS 35 (352)
T PRK06739 16 KETLAQLINNGMKIVRL-NLS 35 (352)
T ss_pred HHHHHHHHHCCCCEEEE-ECC
Confidence 35789999999999999 565
No 320
>PRK10626 hypothetical protein; Provisional
Probab=21.60 E-value=1.8e+02 Score=26.84 Aligned_cols=14 Identities=0% Similarity=-0.009 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHh
Q 015179 171 VKQYYKNHVKAVLT 184 (412)
Q Consensus 171 ~~~~~~~~~~~~v~ 184 (412)
+.+.+..-++.+++
T Consensus 148 ~~~~ve~~~~qlv~ 161 (239)
T PRK10626 148 AIDQVEADGQQLVN 161 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 321
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.35 E-value=2.6e+02 Score=27.38 Aligned_cols=59 Identities=14% Similarity=0.103 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCE-EEEecc
Q 015179 74 VTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVY-VILSLV 136 (412)
Q Consensus 74 ~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~-vil~l~ 136 (412)
.++.++.|+++|+|.|-+ .+...+ +.....-|. ....+.+.+.++.+++.|+. +.+++.
T Consensus 99 t~e~l~~l~~~Gv~risi-GvqS~~-~~~l~~lgR--~~~~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSL-GVQSFR-DDKLLFLGR--QHSAKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred CHHHHHHHHHcCCCEEEE-ecccCC-hHHHHHhCC--CCCHHHHHHHHHHHHHcCCCeEEEecc
Confidence 457799999999996666 332111 111111121 12366777899999999995 667775
No 322
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.23 E-value=1.6e+02 Score=24.99 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=8.6
Q ss_pred CCEEEEEeeeec
Q 015179 47 NGKPLYLNGFNA 58 (412)
Q Consensus 47 dG~~~~~~GvN~ 58 (412)
.|+++++.|.=.
T Consensus 50 ~g~~vrvgG~V~ 61 (148)
T PRK13254 50 AGRRFRLGGLVE 61 (148)
T ss_pred CCCeEEEeEEEe
Confidence 578888888643
No 323
>PRK05826 pyruvate kinase; Provisional
Probab=21.20 E-value=2.5e+02 Score=28.75 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcC--CEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYG--VYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~G--i~vil~l~ 136 (412)
.+.|+.|-+.|+|.+|+ -|+-++ .+...+.++.+=+..++.| +-+++|+.
T Consensus 19 ~e~l~~li~~G~~v~Ri-N~sHg~-----------~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~ 70 (465)
T PRK05826 19 PENLEKLIEAGVNVVRL-NFSHGS-----------HEEHGKRAALVREIAAKLGRPVAILLDLK 70 (465)
T ss_pred HHHHHHHHHcCCCEEEE-EcCCCC-----------HHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 36789999999999999 555232 1223334444444444444 67777775
No 324
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=21.16 E-value=5.5e+02 Score=22.29 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=49.8
Q ss_pred HHHHHHHHc--CCEEEEecccCCccCCCchhhhhhHHhhCCCCCCcCccCCCHHHHHHHHHHHHHHHhcccccccccccC
Q 015179 119 FVVAEAREY--GVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKD 196 (412)
Q Consensus 119 ~~i~~a~~~--Gi~vil~l~~~w~~~gg~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~n~~~g~~y~~ 196 (412)
..+..++++ |++|++.+... . ... . ...-.+++.++.+.+.+..++++ |+=
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~-~--~~~---------------~-~~~~~~~~~~~~f~~~~~~~v~~--------~~~ 105 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGW-T--DSS---------------P-FTLASDPASRAAFANSLVSFLKT--------YGF 105 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCC-C--CCC---------------C-chhhcCHHHHHHHHHHHHHHHHH--------cCC
Confidence 344555555 99999998631 0 000 0 01234677778888777778876 655
Q ss_pred CCceEEeeeccCCCCCCCCChhHHHHHHHHHHHHHHhcCCCCeEEec
Q 015179 197 DPTIFAWELMNEARCPTDPSGTLLQEWIKEMAAHVKSIDNHHLLEVG 243 (412)
Q Consensus 197 ~p~v~~wel~NEp~~~~~~~~~~~~~~~~~~~~~Ir~~dp~~lV~~g 243 (412)
+---+-||-...... ...+.+..+++++..++++. +-++++.
T Consensus 106 DGidiD~E~~~~~~~---~~~~~~~~ll~~lr~~l~~~--~~~ls~a 147 (210)
T cd00598 106 DGVDIDWEYPGAADN---SDRENFITLLRELRSALGAA--NYLLTIA 147 (210)
T ss_pred CceEEeeeCCCCcCc---cHHHHHHHHHHHHHHHhccc--CcEEEEE
Confidence 543444543221110 12345666666666666543 3455543
No 325
>PRK15265 subtilase cytotoxin subunit B-like protein; Provisional
Probab=21.15 E-value=2.3e+02 Score=23.38 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHHHhhhcCCCCCCC---EEecCCcEE-ECCEEEEEeeee
Q 015179 12 FLALLVIIYLNTYIYMAKANPNQEF---AQTNGSHFA-VNGKPLYLNGFN 57 (412)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~---v~v~g~~l~-~dG~~~~~~GvN 57 (412)
+.+|++++.+.++.+..+.....++ +.++.=+.= +|++||+-.|.-
T Consensus 6 ~~~l~l~~~~~~a~a~~t~~~~~~y~S~vvI~~fh~Gqi~s~~yFCi~~~ 55 (134)
T PRK15265 6 SLSVFLIVSLNPAFAEWTGDNVEGMHSGMIINKFHSGQVDGKPYFCIEAF 55 (134)
T ss_pred HHHHHHHHhccHHHHHHHhccccceecceEeeeceeeeEcCCceEEEEee
Confidence 4455555555544444444444554 334432322 478898877654
No 326
>PRK06247 pyruvate kinase; Provisional
Probab=21.15 E-value=2.5e+02 Score=28.88 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcC--CEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYG--VYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~G--i~vil~l~ 136 (412)
.+.|+.|-+.|+|.+|+ -|+-|+ .+...+.++.+=+.+++.| +-+++|+.
T Consensus 20 ~e~l~~li~aGm~v~Rl-N~SHg~-----------~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~ 71 (476)
T PRK06247 20 EDMIRKLVEAGADVFRL-NFSHGD-----------HDDHRELYKRIREVEDETGRPIGILADLQ 71 (476)
T ss_pred HHHHHHHHHCCCCEEEE-ECCCCC-----------HHHHHHHHHHHHHHHHHcCCCeeEEEeCC
Confidence 45799999999999999 565222 1233344444444455544 55777774
No 327
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=21.12 E-value=2.9e+02 Score=25.67 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+..+...+.+|.+.|=+ ... . .+ -+.+..+++.|.+.||.+++++|+
T Consensus 114 ~~QI~ea~~~GADavLL-I~~-----~-------L~---~~~l~~l~~~a~~lGle~LVEVh~ 160 (247)
T PRK13957 114 EIQIREARAFGASAILL-IVR-----I-------LT---PSQIKSFLKHASSLGMDVLVEVHT 160 (247)
T ss_pred HHHHHHHHHcCCCEEEe-EHh-----h-------CC---HHHHHHHHHHHHHcCCceEEEECC
Confidence 34466667788888855 322 0 12 136788999999999999999995
No 328
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=20.92 E-value=1.2e+02 Score=26.65 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHHH
Q 015179 109 YNEDTFKALDFVVAE 123 (412)
Q Consensus 109 ~~~~~l~~ld~~i~~ 123 (412)
-+++..+++.+-++.
T Consensus 97 sn~~l~~~v~~r~~~ 111 (185)
T PRK14000 97 SNPELKKRVQETIKQ 111 (185)
T ss_pred CCHHHHHHHHHHHHH
Confidence 466666676666554
No 329
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=20.83 E-value=6.3e+02 Score=23.97 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=33.6
Q ss_pred HHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecc
Q 015179 78 FQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLV 136 (412)
Q Consensus 78 l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~ 136 (412)
+...-+.||++|=+ |++-.++ ++.++.-.++++.|+++|+-|=..+.
T Consensus 90 i~~Ai~~GftSVM~----DgS~l~~--------eeNi~~T~~vve~Ah~~gv~VEaElG 136 (283)
T PRK07998 90 VKQAVRAGFTSVMI----DGAALPF--------EENIAFTKEAVDFAKSYGVPVEAELG 136 (283)
T ss_pred HHHHHHcCCCEEEE----eCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 33444779998877 3332222 34577888999999999999888885
No 330
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=20.74 E-value=2.6e+02 Score=28.74 Aligned_cols=50 Identities=32% Similarity=0.418 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcC--CEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYG--VYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~G--i~vil~l~ 136 (412)
.+.|+.|-+.|+|.+|+ -|+-++ .+...+.++.+=+.+++.| +-+++|+.
T Consensus 17 ~e~l~~li~aG~~v~Ri-N~sHg~-----------~~~~~~~i~~vr~~~~~~~~~i~il~Dl~ 68 (480)
T cd00288 17 VENLKKLIKAGMNVARM-NFSHGS-----------HEYHQSRIDNVREAAEKTGGPVAIALDTK 68 (480)
T ss_pred HHHHHHHHHcCCCEEEE-EcCCCC-----------HHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 45788999999999999 555221 1233445555555555555 55667764
No 331
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.69 E-value=3.7e+02 Score=24.99 Aligned_cols=52 Identities=12% Similarity=0.093 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 70 TKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 70 ~~~~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
+.+.+.++++.++++|++-|=+ .+ -...|..| .+.+.++++.|. |+. +++|.
T Consensus 71 E~~~M~~di~~~~~~GadGvV~-G~--------L~~dg~vD---~~~~~~Li~~a~--~~~--vTFHR 122 (248)
T PRK11572 71 EFAAMLEDIATVRELGFPGLVT-GV--------LDVDGHVD---MPRMRKIMAAAG--PLA--VTFHR 122 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE-ee--------ECCCCCcC---HHHHHHHHHHhc--CCc--eEEec
Confidence 4568899999999999997766 32 12345666 456677888884 554 36674
No 332
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=20.65 E-value=4e+02 Score=26.53 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCEEEEecccCCccCCCchhhhhhHH
Q 015179 119 FVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWAR 153 (412)
Q Consensus 119 ~~i~~a~~~Gi~vil~l~~~w~~~gg~~~~~~w~~ 153 (412)
.+|+.|+++|+-|+-+++-.|..|||.. .|..
T Consensus 131 DVIDaaHrNGVPvlGt~Ffppk~ygg~~---ewv~ 162 (553)
T COG4724 131 DVIDAAHRNGVPVLGTLFFPPKNYGGDQ---EWVA 162 (553)
T ss_pred hhhhhhhcCCCceeeeeecChhhcCchH---HHHH
Confidence 6899999999999999987777788864 6654
No 333
>PLN02623 pyruvate kinase
Probab=20.56 E-value=2.6e+02 Score=29.44 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHH---cCCEEEEecc
Q 015179 75 TAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEARE---YGVYVILSLV 136 (412)
Q Consensus 75 ~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~---~Gi~vil~l~ 136 (412)
.+.|+.|-+.|+|++|+ -|+-++. +..-+.++.+=+.+++ +.+-+++|+.
T Consensus 125 ~e~l~~li~aGmnv~Rl-NfSHg~~-----------e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~ 177 (581)
T PLN02623 125 REMIWKLAEAGMNVARL-NMSHGDH-----------ASHQKVIDLVKEYNAQSKDNVIAIMLDTK 177 (581)
T ss_pred HHHHHHHHHcCCCEEEE-ECCCCCH-----------HHHHHHHHHHHHHHHHcCCCceEEEecCC
Confidence 56799999999999999 5553321 1222233333333333 4578888885
No 334
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=20.50 E-value=5.2e+02 Score=28.44 Aligned_cols=157 Identities=16% Similarity=0.199 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCC--CEEEecc-ccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEecccCCccCCCchh
Q 015179 71 KAKVTAAFQQATKYGM--NIARTWA-FSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPR 147 (412)
Q Consensus 71 ~~~~~~~l~~l~~~G~--N~vR~~~-~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~~w~~~gg~~~ 147 (412)
.+.+.+.++.+++..+ .++++-. |....|. .-++|+..|-..+.+++..++.||++++.+.-.-.. ..+.
T Consensus 279 e~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~-----~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~--d~~~ 351 (772)
T COG1501 279 EDEVLEFIDEMRERDIPLDVFVLDIDFWMDNWG-----DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQ--DSPL 351 (772)
T ss_pred HHHHHHHHhhcccccCcceEEEEeehhhhcccc-----ceEECcccCCCHHHHHHHHHhcCceEEEEecccccc--CCch
Confidence 4566667777766554 5555521 1211121 124566667777899999999999999987521000 0011
Q ss_pred hhhhHHhhC--------C-------CCCCcCccCCCHHHHHHHHH-HHHHHHhcccccccccccCCCceEEeeeccCCCC
Q 015179 148 YVEWARERG--------Q-------SLKNEDDFYTNAVVKQYYKN-HVKAVLTRINSITGVAYKDDPTIFAWELMNEARC 211 (412)
Q Consensus 148 ~~~w~~~~g--------~-------~~~~~~~~~~~~~~~~~~~~-~~~~~v~r~n~~~g~~y~~~p~v~~wel~NEp~~ 211 (412)
+ .-+.+.| . +....-.=|++|++++.|.+ ..+.+.. -.-..-|.=+|||..
T Consensus 352 ~-~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d------------~Gv~g~W~D~nEp~~ 418 (772)
T COG1501 352 F-KEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLD------------LGVDGFWNDMNEPEP 418 (772)
T ss_pred H-HHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHh------------cCccEEEccCCCCcc
Confidence 1 0111111 0 00011112457999888875 2233333 323344677999987
Q ss_pred CCCC------ChhH-----HHHHHHHHHHHHHhcCC-CCeEEeccccc
Q 015179 212 PTDP------SGTL-----LQEWIKEMAAHVKSIDN-HHLLEVGLEGF 247 (412)
Q Consensus 212 ~~~~------~~~~-----~~~~~~~~~~~Ir~~dp-~~lV~~g~~g~ 247 (412)
.... +... ..-+.+..++++|+..| .+++++.-.++
T Consensus 419 ~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~ 466 (772)
T COG1501 419 FDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGY 466 (772)
T ss_pred ccccccccccCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 5321 1111 12345677889999876 45666544443
No 335
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.48 E-value=90 Score=28.33 Aligned_cols=25 Identities=20% Similarity=0.378 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHhhh
Q 015179 4 TRLFNSFIFLALLVIIYLNTYIYMA 28 (412)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (412)
.++|+.+|-+++|+|+.++..+|+.
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~ 37 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFG 37 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheec
Confidence 4677888888887777766666653
No 336
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.47 E-value=3.4e+02 Score=25.03 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEE
Q 015179 73 KVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVIL 133 (412)
Q Consensus 73 ~~~~~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil 133 (412)
-++..|+.+.+.|++.|-++......+ . ...+++ ..++++-+.++++||.+.+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~---~--~~~~~~---~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSW---K--GVRLSE---ETAEKFKEALKENNIDVSV 63 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCC---C--CCCCCH---HHHHHHHHHHHHcCCCEEE
Confidence 456789999999999999965331101 0 112232 3566777788899998543
No 337
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=20.37 E-value=6.3e+02 Score=23.98 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=35.1
Q ss_pred HHHHHHHcCCCEEEeccccCCCCcccccCCCCCChhHHHHHHHHHHHHHHcCCEEEEeccc
Q 015179 77 AFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVN 137 (412)
Q Consensus 77 ~l~~l~~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~i~~a~~~Gi~vil~l~~ 137 (412)
.+..+-+.||++|=+ |++-.++ ++-++.-.++++.|+++|+-|=.+|-.
T Consensus 92 ~i~~ai~~GftSVM~----DgS~lp~--------eeNi~~Trevv~~Ah~~gv~VEaElG~ 140 (285)
T PRK07709 92 KCKEAIDAGFTSVMI----DASHHPF--------EENVETTKKVVEYAHARNVSVEAELGT 140 (285)
T ss_pred HHHHHHHcCCCEEEE----eCCCCCH--------HHHHHHHHHHHHHHHHcCCEEEEEEec
Confidence 344555679998877 3332222 344777789999999999999999863
No 338
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=20.03 E-value=1.5e+02 Score=22.07 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.2
Q ss_pred CCcEEEeCCCccHHHHHHHHHHHHhhcc
Q 015179 382 DGYEVVLESSPSTANIINQQSLRLAVLS 409 (412)
Q Consensus 382 ~gy~i~~~~~~~~~~~i~~~~~~~~~~~ 409 (412)
+|..|.... ...++.|.+++|||...+
T Consensus 25 ~ga~IHl~~-~~~l~~IQrAaRkLd~qG 51 (77)
T PF12404_consen 25 QGATIHLSE-GDDLRAIQRAARKLDGQG 51 (77)
T ss_pred CCEEEEECC-CcchHHHHHHHHHHhhCC
Confidence 588998853 346889999999998754
Done!