Query 015180
Match_columns 411
No_of_seqs 191 out of 663
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 08:05:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v87_A Deltex protein 2; ring- 99.5 1.9E-14 6.4E-19 117.4 3.8 76 233-308 24-101 (114)
2 1x4j_A Ring finger protein 38; 99.4 1.1E-13 3.7E-18 105.8 3.1 52 232-301 21-72 (75)
3 2ecl_A Ring-box protein 2; RNF 99.4 2E-13 6.7E-18 107.3 3.9 63 232-301 13-76 (81)
4 1iym_A EL5; ring-H2 finger, ub 99.4 2E-13 6.9E-18 98.0 2.8 50 233-300 4-54 (55)
5 2kiz_A E3 ubiquitin-protein li 99.3 3E-13 1E-17 101.4 3.2 53 232-302 12-64 (69)
6 2ep4_A Ring finger protein 24; 99.3 2.3E-13 7.8E-18 103.3 2.5 52 232-301 13-64 (74)
7 2l0b_A E3 ubiquitin-protein li 99.3 3.1E-13 1.1E-17 107.8 2.6 51 232-300 38-88 (91)
8 3dpl_R Ring-box protein 1; ubi 99.3 4.6E-13 1.6E-17 111.9 3.5 65 232-300 35-100 (106)
9 2ect_A Ring finger protein 126 99.3 4E-13 1.4E-17 102.9 2.2 52 232-301 13-64 (78)
10 2ecm_A Ring finger and CHY zin 99.3 5.7E-13 2E-17 95.4 2.2 51 233-300 4-54 (55)
11 2ea6_A Ring finger protein 4; 99.2 2.4E-12 8.3E-17 95.2 3.1 56 232-301 13-68 (69)
12 3ng2_A RNF4, snurf, ring finge 99.2 1.7E-12 5.9E-17 97.0 2.2 56 232-301 8-63 (71)
13 2d8t_A Dactylidin, ring finger 99.2 3.9E-12 1.3E-16 96.5 2.8 49 232-301 13-61 (71)
14 2xeu_A Ring finger protein 4; 99.2 3.1E-12 1.1E-16 93.4 2.0 55 233-301 2-56 (64)
15 4a0k_B E3 ubiquitin-protein li 99.2 2E-12 6.8E-17 110.5 0.3 64 233-300 47-111 (117)
16 2ct2_A Tripartite motif protei 99.2 1.2E-11 4E-16 95.7 4.6 56 232-301 13-68 (88)
17 1g25_A CDK-activating kinase a 99.1 1.8E-11 6.3E-16 91.1 3.7 54 232-301 1-55 (65)
18 2ecn_A Ring finger protein 141 99.1 1.5E-11 5.1E-16 92.4 3.0 48 232-301 13-60 (70)
19 1chc_A Equine herpes virus-1 r 99.1 7.5E-12 2.6E-16 93.3 1.1 49 233-301 4-52 (68)
20 2djb_A Polycomb group ring fin 99.1 1.7E-11 5.9E-16 93.1 2.5 50 233-302 14-63 (72)
21 2d8s_A Cellular modulator of i 99.1 1.8E-11 6.1E-16 97.7 2.6 53 232-301 13-70 (80)
22 2ysl_A Tripartite motif-contai 99.1 7.1E-11 2.4E-15 88.9 5.3 52 232-301 18-69 (73)
23 2ecy_A TNF receptor-associated 99.1 3.4E-11 1.2E-15 89.9 2.9 50 232-301 13-62 (66)
24 2csy_A Zinc finger protein 183 99.1 3E-11 1E-15 93.5 2.6 60 233-313 14-74 (81)
25 4ayc_A E3 ubiquitin-protein li 99.0 4.1E-11 1.4E-15 101.9 2.2 49 233-302 52-100 (138)
26 4ap4_A E3 ubiquitin ligase RNF 99.0 6.7E-11 2.3E-15 96.6 2.7 56 232-301 5-60 (133)
27 2egp_A Tripartite motif-contai 99.0 9.2E-11 3.2E-15 89.2 2.3 53 232-301 10-65 (79)
28 3fl2_A E3 ubiquitin-protein li 99.0 1E-10 3.5E-15 97.2 2.6 49 233-301 51-99 (124)
29 2ysj_A Tripartite motif-contai 99.0 2.5E-10 8.6E-15 84.2 4.4 46 232-295 18-63 (63)
30 1t1h_A Gspef-atpub14, armadill 99.0 1.3E-10 4.3E-15 89.0 2.7 50 232-301 6-55 (78)
31 2ecj_A Tripartite motif-contai 99.0 1.8E-10 6.1E-15 83.0 2.9 46 232-295 13-58 (58)
32 3lrq_A E3 ubiquitin-protein li 99.0 6.8E-11 2.3E-15 95.7 0.7 50 233-301 21-70 (100)
33 2ct0_A Non-SMC element 1 homol 99.0 4.9E-10 1.7E-14 89.1 5.2 57 232-306 13-69 (74)
34 2yur_A Retinoblastoma-binding 99.0 1.2E-10 4.1E-15 89.2 1.6 50 232-300 13-63 (74)
35 2ecw_A Tripartite motif-contai 98.9 2.3E-10 7.8E-15 87.2 2.4 52 233-301 18-71 (85)
36 2y43_A E3 ubiquitin-protein li 98.9 2.4E-10 8.3E-15 91.4 2.1 49 233-301 21-69 (99)
37 2ckl_A Polycomb group ring fin 98.9 2.6E-10 9.1E-15 92.7 2.2 50 233-302 14-63 (108)
38 2ckl_B Ubiquitin ligase protei 98.9 2.5E-10 8.7E-15 99.1 2.1 50 233-301 53-102 (165)
39 2ecv_A Tripartite motif-contai 98.9 2E-10 7E-15 87.5 1.3 53 232-301 17-71 (85)
40 3l11_A E3 ubiquitin-protein li 98.9 2.2E-10 7.4E-15 93.9 1.1 49 232-300 13-61 (115)
41 4ap4_A E3 ubiquitin ligase RNF 98.9 3E-10 1E-14 92.7 1.8 56 232-301 70-125 (133)
42 3ztg_A E3 ubiquitin-protein li 98.9 5.7E-10 1.9E-14 87.7 2.6 50 232-300 11-61 (92)
43 1z6u_A NP95-like ring finger p 98.9 7.8E-10 2.7E-14 96.4 3.4 50 233-302 77-126 (150)
44 1jm7_A BRCA1, breast cancer ty 98.8 1.1E-09 3.8E-14 88.3 2.5 51 233-301 20-70 (112)
45 3hct_A TNF receptor-associated 98.7 1.8E-09 6E-14 89.4 1.5 50 232-301 16-65 (118)
46 1rmd_A RAG1; V(D)J recombinati 98.7 2.5E-09 8.4E-14 87.7 2.3 50 233-302 22-71 (116)
47 1e4u_A Transcriptional repress 98.7 8E-09 2.7E-13 81.8 3.3 54 232-301 9-62 (78)
48 2y1n_A E3 ubiquitin-protein li 98.6 1.5E-08 5.1E-13 101.8 2.6 49 233-301 331-379 (389)
49 1bor_A Transcription factor PM 98.6 5.5E-09 1.9E-13 76.7 -0.4 45 233-301 5-49 (56)
50 1jm7_B BARD1, BRCA1-associated 98.6 7.4E-09 2.5E-13 85.6 0.0 46 233-301 21-67 (117)
51 3knv_A TNF receptor-associated 98.5 1.2E-08 4E-13 88.3 0.7 49 232-300 29-77 (141)
52 4ic3_A E3 ubiquitin-protein li 98.5 3.4E-08 1.1E-12 76.2 1.5 44 233-301 23-67 (74)
53 2kr4_A Ubiquitin conjugation f 98.5 5.1E-08 1.8E-12 77.4 2.2 48 233-301 13-60 (85)
54 2kre_A Ubiquitin conjugation f 98.4 7.3E-08 2.5E-12 79.2 2.9 49 232-301 27-75 (100)
55 1wgm_A Ubiquitin conjugation f 98.4 9.3E-08 3.2E-12 78.3 3.1 48 233-301 21-69 (98)
56 2c2l_A CHIP, carboxy terminus 98.4 5.2E-08 1.8E-12 88.3 1.7 50 232-301 206-255 (281)
57 2vje_A E3 ubiquitin-protein li 98.4 1E-07 3.6E-12 72.0 1.7 49 232-301 6-57 (64)
58 3hcs_A TNF receptor-associated 98.4 9.3E-08 3.2E-12 83.1 1.6 50 232-301 16-65 (170)
59 2yu4_A E3 SUMO-protein ligase 98.3 1.8E-07 6.2E-12 75.3 2.4 50 232-298 5-59 (94)
60 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.3E-07 7.9E-12 70.4 1.7 49 233-300 5-58 (60)
61 2vje_B MDM4 protein; proto-onc 98.2 2.6E-07 8.8E-12 69.6 1.5 48 233-301 6-56 (63)
62 2ecg_A Baculoviral IAP repeat- 98.2 3.6E-07 1.2E-11 70.3 1.9 44 233-301 24-68 (75)
63 3k1l_B Fancl; UBC, ring, RWD, 98.2 2.6E-07 8.8E-12 92.7 0.9 90 201-301 268-373 (381)
64 2f42_A STIP1 homology and U-bo 98.1 1.1E-06 3.7E-11 80.0 2.1 50 232-301 104-153 (179)
65 2yho_A E3 ubiquitin-protein li 98.0 1.5E-06 5E-11 68.4 1.4 44 233-301 17-61 (79)
66 1wim_A KIAA0161 protein; ring 98.0 1.3E-06 4.5E-11 69.5 0.7 52 233-298 4-61 (94)
67 2ea5_A Cell growth regulator w 97.9 2.5E-06 8.4E-11 65.5 1.9 45 232-301 13-58 (68)
68 3t6p_A Baculoviral IAP repeat- 97.9 2.6E-06 9E-11 83.9 0.7 44 233-301 294-338 (345)
69 3htk_C E3 SUMO-protein ligase 97.8 4.4E-06 1.5E-10 80.7 2.0 52 232-301 179-232 (267)
70 2bay_A PRE-mRNA splicing facto 97.7 6.6E-06 2.3E-10 62.3 1.0 47 234-301 3-50 (61)
71 3nw0_A Non-structural maintena 97.5 5.1E-05 1.8E-09 71.2 3.9 54 233-304 179-232 (238)
72 3vk6_A E3 ubiquitin-protein li 97.2 0.00011 3.8E-09 62.2 1.9 47 236-301 3-49 (101)
73 2lri_C Autoimmune regulator; Z 92.5 0.12 4.2E-06 39.9 4.1 51 232-299 10-60 (66)
74 1wil_A KIAA1045 protein; ring 91.8 0.16 5.6E-06 42.1 4.3 52 231-297 12-75 (89)
75 2k16_A Transcription initiatio 90.7 0.12 4E-06 39.8 2.3 55 232-300 16-70 (75)
76 1f62_A Transcription factor WS 89.6 0.22 7.5E-06 35.7 2.8 31 268-298 20-50 (51)
77 2l5u_A Chromodomain-helicase-D 85.4 0.45 1.5E-05 35.8 2.4 31 268-298 28-58 (61)
78 2yql_A PHD finger protein 21A; 83.0 0.2 6.9E-06 36.9 -0.4 49 232-297 7-55 (56)
79 1weu_A Inhibitor of growth fam 82.8 1.1 3.7E-05 36.8 3.8 30 269-300 57-87 (91)
80 2ysm_A Myeloid/lymphoid or mix 82.5 0.37 1.3E-05 39.5 0.9 51 232-296 5-55 (111)
81 1we9_A PHD finger family prote 81.9 0.24 8.4E-06 36.9 -0.3 56 232-300 4-60 (64)
82 2jun_A Midline-1; B-BOX, TRIM, 80.2 0.68 2.3E-05 36.6 1.7 36 233-282 2-38 (101)
83 3u5n_A E3 ubiquitin-protein li 78.2 0.49 1.7E-05 42.7 0.4 32 268-299 24-55 (207)
84 1xwh_A Autoimmune regulator; P 78.0 0.47 1.6E-05 36.0 0.2 52 232-300 6-57 (66)
85 1mm2_A MI2-beta; PHD, zinc fin 77.4 0.44 1.5E-05 35.8 -0.1 32 268-299 26-57 (61)
86 1wev_A Riken cDNA 1110020M19; 77.4 0.34 1.2E-05 39.0 -0.8 34 268-301 38-75 (88)
87 2e6r_A Jumonji/ARID domain-con 76.2 0.23 7.9E-06 40.3 -2.1 55 232-300 14-68 (92)
88 2puy_A PHD finger protein 21A; 75.7 0.3 1E-05 36.3 -1.5 51 233-300 4-54 (60)
89 2ko5_A Ring finger protein Z; 73.8 1 3.6E-05 38.0 1.2 47 232-301 26-73 (99)
90 2ysm_A Myeloid/lymphoid or mix 73.6 0.47 1.6E-05 38.9 -1.0 33 268-300 74-106 (111)
91 3shb_A E3 ubiquitin-protein li 73.5 1.5 5.3E-05 34.7 2.0 31 268-298 46-77 (77)
92 2ro1_A Transcription intermedi 72.8 0.83 2.8E-05 41.1 0.4 32 268-299 19-50 (189)
93 3o36_A Transcription intermedi 72.5 0.85 2.9E-05 40.3 0.4 33 268-300 21-53 (184)
94 2yt5_A Metal-response element- 71.9 0.65 2.2E-05 34.7 -0.5 57 232-300 4-63 (66)
95 2ku3_A Bromodomain-containing 70.9 2 6.8E-05 33.5 2.1 52 232-298 14-66 (71)
96 1wen_A Inhibitor of growth fam 68.2 2.7 9.2E-05 32.7 2.3 30 269-300 37-67 (71)
97 3v43_A Histone acetyltransfera 68.1 1.3 4.5E-05 36.6 0.6 30 268-297 82-111 (112)
98 1wew_A DNA-binding family prot 66.7 3.6 0.00012 32.1 2.8 34 268-301 37-75 (78)
99 1fp0_A KAP-1 corepressor; PHD 66.6 1.9 6.6E-05 35.3 1.3 33 268-300 42-74 (88)
100 2e6s_A E3 ubiquitin-protein li 65.7 1.2 4.2E-05 35.2 -0.0 30 268-297 46-76 (77)
101 2kwj_A Zinc finger protein DPF 64.8 0.57 2E-05 39.0 -2.3 34 268-301 78-111 (114)
102 2l43_A N-teminal domain from h 64.2 2.4 8.1E-05 34.2 1.3 51 232-300 23-77 (88)
103 2lv9_A Histone-lysine N-methyl 62.9 1.6 5.6E-05 35.6 0.2 30 268-298 47-76 (98)
104 3asl_A E3 ubiquitin-protein li 62.7 3.9 0.00013 31.6 2.3 31 268-298 38-69 (70)
105 1weo_A Cellulose synthase, cat 61.7 9.4 0.00032 32.0 4.5 57 232-301 14-70 (93)
106 1wem_A Death associated transc 60.1 1.9 6.5E-05 33.2 0.1 53 234-301 16-73 (76)
107 2lbm_A Transcriptional regulat 56.3 6.2 0.00021 34.8 2.7 30 268-297 80-116 (142)
108 3lqh_A Histone-lysine N-methyl 55.2 0.94 3.2E-05 41.2 -2.8 55 234-300 2-65 (183)
109 1wep_A PHF8; structural genomi 54.9 6.4 0.00022 30.6 2.3 53 234-300 12-65 (79)
110 2ri7_A Nucleosome-remodeling f 54.5 2.3 7.7E-05 37.0 -0.4 54 233-300 7-61 (174)
111 2xb1_A Pygopus homolog 2, B-ce 54.0 1.2 4.2E-05 36.9 -2.1 54 234-300 3-63 (105)
112 3ask_A E3 ubiquitin-protein li 52.3 3 0.0001 39.4 0.1 31 268-298 194-225 (226)
113 2kwj_A Zinc finger protein DPF 49.4 4.1 0.00014 33.8 0.4 54 235-296 2-59 (114)
114 3v43_A Histone acetyltransfera 49.0 12 0.0004 30.9 3.1 53 233-296 4-62 (112)
115 1wee_A PHD finger family prote 47.2 2.2 7.5E-05 32.7 -1.5 33 268-300 36-68 (72)
116 1x4i_A Inhibitor of growth pro 46.2 8.3 0.00028 29.8 1.7 28 271-300 30-57 (70)
117 3o70_A PHD finger protein 13; 45.7 3.2 0.00011 31.9 -0.7 51 232-298 17-67 (68)
118 3m62_A Ubiquitin conjugation f 44.0 9.1 0.00031 42.9 2.2 48 233-301 890-938 (968)
119 3i2d_A E3 SUMO-protein ligase 42.0 10 0.00035 38.2 2.0 36 263-300 262-299 (371)
120 2rsd_A E3 SUMO-protein ligase 41.1 2.2 7.4E-05 32.5 -2.3 30 268-297 31-64 (68)
121 2vnf_A ING 4, P29ING4, inhibit 37.5 4.1 0.00014 30.5 -1.3 27 269-297 31-58 (60)
122 4fo9_A E3 SUMO-protein ligase 37.0 14 0.00047 37.2 2.0 48 235-300 216-265 (360)
123 3brd_D Protein LIN-12; protein 37.0 9.8 0.00033 25.7 0.6 13 82-94 11-23 (29)
124 2kgg_A Histone demethylase jar 36.9 2.2 7.6E-05 30.9 -2.7 48 236-296 4-52 (52)
125 4gne_A Histone-lysine N-methyl 36.2 11 0.00038 31.6 1.0 32 268-301 34-65 (107)
126 3c6w_A P28ING5, inhibitor of g 34.9 5 0.00017 30.0 -1.2 27 269-297 30-57 (59)
127 2cu8_A Cysteine-rich protein 2 32.4 13 0.00043 27.7 0.7 41 233-301 8-48 (76)
128 3ql9_A Transcriptional regulat 32.1 18 0.0006 31.5 1.6 31 268-298 74-111 (129)
129 2g6q_A Inhibitor of growth pro 31.5 6.1 0.00021 29.9 -1.2 28 269-298 32-60 (62)
130 2gmg_A Hypothetical protein PF 30.8 21 0.00072 30.3 1.9 26 267-301 71-96 (105)
131 2vpb_A Hpygo1, pygopus homolog 30.5 19 0.00066 27.4 1.4 52 233-297 7-65 (65)
132 1m3v_A FLIN4, fusion of the LI 27.6 32 0.0011 28.0 2.4 39 234-300 5-43 (122)
133 2jmi_A Protein YNG1, ING1 homo 27.2 10 0.00035 31.0 -0.7 25 271-297 50-75 (90)
134 2co8_A NEDD9 interacting prote 27.0 14 0.00049 28.1 0.2 42 232-301 13-54 (82)
135 2dar_A PDZ and LIM domain prot 26.3 12 0.00042 28.8 -0.3 41 232-301 23-63 (90)
136 3mjh_B Early endosome antigen 26.3 13 0.00044 25.7 -0.2 14 232-245 3-16 (34)
137 2dj7_A Actin-binding LIM prote 25.1 15 0.00053 28.0 0.0 41 232-300 13-53 (80)
138 1zfo_A LAsp-1; LIM domain, zin 25.1 13 0.00043 24.4 -0.4 28 235-278 4-31 (31)
139 2pk7_A Uncharacterized protein 22.9 23 0.00077 27.7 0.6 40 279-322 2-48 (69)
140 1x64_A Alpha-actinin-2 associa 22.7 34 0.0012 26.1 1.6 41 232-301 23-63 (89)
141 2l4z_A DNA endonuclease RBBP8, 22.4 16 0.00054 30.4 -0.4 41 232-300 59-99 (123)
142 2zet_C Melanophilin; complex, 21.6 6.3 0.00021 34.9 -3.2 74 232-320 66-140 (153)
143 2kpi_A Uncharacterized protein 20.0 15 0.00053 27.4 -0.8 11 290-300 11-21 (56)
No 1
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.46 E-value=1.9e-14 Score=117.45 Aligned_cols=76 Identities=25% Similarity=0.390 Sum_probs=49.4
Q ss_pred CCccccccccchhccCCCccccccc-cCCCCCceeecCCCHhhHHHHHhhccCCC-CCCCCCcccccCcccCCCCcch
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQEENSPDQQV 308 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~-~~D~~vVaVLPCGHVFHaeCLeqWL~k~~-~~dptCPLCR~~~~~~~~~qp~ 308 (411)
....|+||++.|.....+....... .....++.+++|||+||.+||++|+.... ....+||+||..+..+.++||-
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~ 101 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPW 101 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTT
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCC
Confidence 3468999999997432111100000 01112455789999999999999995321 1236899999999887776664
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=105.85 Aligned_cols=52 Identities=29% Similarity=0.620 Sum_probs=43.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE--------------SRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECC--------------BTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCeECCcccC--------------CCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 46678999999987 23457789999999999999999765 489999998865
No 3
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=2e-13 Score=107.29 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=44.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.++..|+||++.|.+.+|-+..... ..+.+.++ +|||+||.+||++||...+ +||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~---~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENK---QEDCVVVWGECNHSFHNCCMSLWVKQNN----RCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTC---TTTCCEEEETTSCEEEHHHHHHHTTTCC----BCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccC---CCceEEEeCCCCCccChHHHHHHHHhCC----CCCCcCCCcch
Confidence 3566799999998765544433211 12234455 5999999999999998763 89999998753
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36 E-value=2e-13 Score=98.02 Aligned_cols=50 Identities=32% Similarity=0.642 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+...|+||++.|. +.+.+..++ |||+||.+||++|+.+. .+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~--------------~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELE--------------DGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCC--------------TTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCSC
T ss_pred CCCcCccCCcccc--------------CCCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEeE
Confidence 5678999999987 233456777 99999999999999764 48999998763
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=3e-13 Score=101.41 Aligned_cols=53 Identities=32% Similarity=0.604 Sum_probs=43.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
.....|+||++.|. +...+.+|+|||+||.+||.+|+... .+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILE--------------EGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCC--------------SSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCSC
T ss_pred CCCCCCeeCCcccc--------------CCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccCc
Confidence 35678999999986 23356789999999999999999875 3799999998753
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.3e-13 Score=103.31 Aligned_cols=52 Identities=23% Similarity=0.512 Sum_probs=43.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+||++.|. +...+.+|+|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFK--------------PRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCC--------------SSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccC--------------CCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 35678999999987 33456688999999999999999865 389999998864
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.33 E-value=3.1e-13 Score=107.83 Aligned_cols=51 Identities=25% Similarity=0.567 Sum_probs=42.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|+||++.|. +...+.+|+|||+||.+||++|+.+. .+||+||..+.
T Consensus 38 ~~~~~C~IC~~~~~--------------~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYV--------------KGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECC--------------TTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSS
T ss_pred CCCCCCcccChhhc--------------CCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCC
Confidence 35678999999987 33457789999999999999999765 48999998875
No 8
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.33 E-value=4.6e-13 Score=111.88 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=47.0
Q ss_pred CCCccccccccchhccCCCcccccc-ccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIV-RSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv-~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|+||++.|...++.+..... ..++...+..|+|||+||.+||++||... .+||+||..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 3567899999999876654422110 11233356788999999999999999875 48999999864
No 9
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.31 E-value=4e-13 Score=102.86 Aligned_cols=52 Identities=25% Similarity=0.593 Sum_probs=43.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+||++.|. +...+.+|+|||+||.+||.+|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA--------------LGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC--------------TTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--------------CCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCC
Confidence 35678999999987 33356688999999999999999765 489999999875
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=5.7e-13 Score=95.40 Aligned_cols=51 Identities=25% Similarity=0.586 Sum_probs=41.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+...|+||++.|.+ ....+.+++|||+||.+||++|+... .+||+||..+.
T Consensus 4 ~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-------------SRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCT-------------TTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCcCcccChhhcC-------------CCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 56789999999862 12346788999999999999999876 48999998764
No 11
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.4e-12 Score=95.24 Aligned_cols=56 Identities=25% Similarity=0.555 Sum_probs=43.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|.... .....+.+++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHT----------TTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccc----------cccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 46778999999987210 012234678999999999999999864 489999998753
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.24 E-value=1.7e-12 Score=97.03 Aligned_cols=56 Identities=27% Similarity=0.581 Sum_probs=44.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|... + .....+..++|||+||.+||++|+... .+||+||..+..
T Consensus 8 ~~~~~C~IC~~~~~~~--------~--~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEI--------V--QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHH--------H--TTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhcc--------c--cccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccCh
Confidence 5678899999999721 0 012345688999999999999999765 489999999874
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.9e-12 Score=96.46 Aligned_cols=49 Identities=22% Similarity=0.470 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + ...++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~---~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV--------------H---PVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS--------------S---EEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC--------------C---CEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCH
Confidence 46778999999886 1 2467999999999999999765 489999999874
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.21 E-value=3.1e-12 Score=93.42 Aligned_cols=55 Identities=22% Similarity=0.530 Sum_probs=42.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|.... .....+..++|||+||.+||++|+... .+||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~----------~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIV----------QNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHH----------HTTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCcc----------ccCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCc
Confidence 4578999999987210 011345678999999999999999864 489999999874
No 15
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.19 E-value=2e-12 Score=110.51 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=1.1
Q ss_pred CCccccccccchhccCCCccccccc-cCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVR-SGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~-~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
....|+||++.|...++.+...... .++...+..++|+|+||.+||++||... .+||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 4578999999998655543221000 1222345567999999999999999875 48999999865
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.2e-11 Score=95.72 Aligned_cols=56 Identities=20% Similarity=0.583 Sum_probs=43.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|.. ......+|+|||+||.+||++|+.... ....||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTE-------------EQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCT-------------TSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccc-------------cCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccc
Confidence 466789999999872 111255789999999999999997641 23689999998864
No 17
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.15 E-value=1.8e-11 Score=91.07 Aligned_cols=54 Identities=19% Similarity=0.352 Sum_probs=41.7
Q ss_pred CCCcccccccc-chhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCER-FLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle-~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
|+...|+||++ .|.. ....+.+++|||+||.+||++|+.+.. ..||+||+.+..
T Consensus 1 m~~~~C~IC~~~~~~~-------------~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 55 (65)
T 1g25_A 1 MDDQGCPRCKTTKYRN-------------PSLKLMVNVCGHTLCESCVDLLFVRGA---GNCPECGTPLRK 55 (65)
T ss_dssp CCTTCCSTTTTHHHHC-------------SSCCEEECTTCCCEEHHHHHHHHHTTS---SSCTTTCCCCSS
T ss_pred CCCCcCCcCCCCccCC-------------CccCeecCCCCCHhHHHHHHHHHHcCC---CcCCCCCCcccc
Confidence 46778999999 7761 111234679999999999999987543 589999999875
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=1.5e-11 Score=92.36 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=40.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.+. + .+++|||+||.+||++|+... .+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~----~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--------------D----LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--------------S----EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTC
T ss_pred CCCCCCeeCCcCcc--------------C----cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccC
Confidence 45678999999876 2 578999999999999999854 589999998874
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.13 E-value=7.5e-12 Score=93.27 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|+||++.+. + .+..++|||+||.+||.+|+... .+||+||..+..
T Consensus 4 ~~~~C~IC~~~~~--------------~--~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPS--------------N--YSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCC--------------S--CEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCCC
T ss_pred CCCCCeeCCcccc--------------C--CcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhHh
Confidence 4567999999876 1 24578999999999999999765 489999998864
No 20
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.7e-11 Score=93.08 Aligned_cols=50 Identities=22% Similarity=0.594 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+...|+||++.|. + .+.+++|||+||.+||++|+... ..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYLI--------------D--ATTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCCS--------------S--CEECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCSS
T ss_pred CCCCCCCCChHHH--------------C--cCEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCcc
Confidence 5678999999887 2 23344999999999999999764 5899999998753
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-11 Score=97.72 Aligned_cols=53 Identities=21% Similarity=0.411 Sum_probs=42.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCC-----CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-----HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-----HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|.||++++.+ ...+ ++||. |.||.+||++||...+ +.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~--------------~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDD--------------ESPL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCS--------------SSCE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccC--------------CCee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeec
Confidence 466789999998861 2233 68996 9999999999998753 2589999999964
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=7.1e-11 Score=88.85 Aligned_cols=52 Identities=21% Similarity=0.503 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. ...+++|||+||.+||.+|+... .....||+||..+..
T Consensus 18 ~~~~~C~IC~~~~~-----------------~~~~~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ-----------------KPVTIDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS-----------------SEEECTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC-----------------CeEEcCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCCc
Confidence 36678999999887 13356999999999999999732 123689999999864
No 23
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.4e-11 Score=89.87 Aligned_cols=50 Identities=26% Similarity=0.652 Sum_probs=40.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.+. + ++ +++|||+||.+||++|+.+.. ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~--------------~-p~--~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC--------------S-PK--QTECGHRFCESCMAALLSSSS---PKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEES--------------S-CC--CCSSSCCCCHHHHHHHHTTSS---CCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhc--------------C-ee--ECCCCCHHHHHHHHHHHHhCc---CCCCCCCcCCCh
Confidence 46678999999987 1 22 379999999999999996432 589999999864
No 24
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=93.46 Aligned_cols=60 Identities=27% Similarity=0.605 Sum_probs=44.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC-CCCcchhhh
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN-SPDQQVFSR 311 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~-~~~qp~~~~ 311 (411)
....|+||++.|. + ..+++|||+||..||.+|+... ..||+||..+... .++..++.+
T Consensus 14 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~~l~~~ 72 (81)
T 2csy_A 14 IPFRCFICRQAFQ--------------N---PVVTKCRHYFCESCALEHFRAT----PRCYICDQPTGGIFNPAKELMAK 72 (81)
T ss_dssp CCSBCSSSCSBCC--------------S---EEECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCCSCCEECHHHHHH
T ss_pred CCCCCcCCCchhc--------------C---eeEccCCCHhHHHHHHHHHHCC----CcCCCcCccccccCCcHHHHHHH
Confidence 5668999999987 1 2368999999999999999764 5899999998621 234444444
Q ss_pred hc
Q 015180 312 LK 313 (411)
Q Consensus 312 lr 313 (411)
++
T Consensus 73 ~~ 74 (81)
T 2csy_A 73 LQ 74 (81)
T ss_dssp HS
T ss_pred HH
Confidence 44
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=4.1e-11 Score=101.90 Aligned_cols=49 Identities=22% Similarity=0.689 Sum_probs=40.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+...|+||++.|. + ..+++|||+||..||.+|+... .+||+||..+...
T Consensus 52 ~~~~C~iC~~~~~--------------~---~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFI--------------E---AVTLNCAHSFCSYCINEWMKRK----IECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCS--------------S---EEEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCCE
T ss_pred ccCCCcccCcccC--------------C---ceECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCCC
Confidence 3457999999987 1 3468999999999999999765 4899999998643
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.03 E-value=6.7e-11 Score=96.60 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|.+. +. +...+.+++|||+||.+||++|+... .+||+|+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHH--------HH--TTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCc--------cc--cccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcc
Confidence 3567899999999720 00 12345688999999999999999765 389999999874
No 27
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.00 E-value=9.2e-11 Score=89.23 Aligned_cols=53 Identities=23% Similarity=0.627 Sum_probs=41.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCC---CCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ---KSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~---~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + ++ +|+|||+||.+||.+|+.... .....||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~--------------~-p~--~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLT--------------E-PL--SLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECS--------------S-CC--CCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccC--------------C-ee--ECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 46778999999987 1 22 479999999999999998631 123689999999874
No 28
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=97.25 Aligned_cols=49 Identities=24% Similarity=0.526 Sum_probs=40.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + ...++|||+||..||.+|+.... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF--------------R---PITTVCQHNVCKDCLDRSFRAQV---FSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS--------------S---EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc--------------C---cEEeeCCCcccHHHHHHHHhHCc---CCCCCCCccCCC
Confidence 5578999999987 1 23579999999999999997432 589999999975
No 29
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.5e-10 Score=84.22 Aligned_cols=46 Identities=24% Similarity=0.618 Sum_probs=36.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
.+...|+||++.|. + ..+|+|||+||.+||++|+.... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ--------------K---PVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS--------------S---CEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhC--------------C---eEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 36678999999887 1 23569999999999999997421 23589998
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.99 E-value=1.3e-10 Score=88.95 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=41.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + ..+++|||+|+..||++|+.+.. .+||+|+..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---Pv~~~CgH~fc~~Ci~~~~~~~~---~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMK--------------D---PVIVSTGQTYERSSIQKWLDAGH---KTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCS--------------S---EEEETTTEEEEHHHHHHHHTTTC---CBCTTTCCBCSS
T ss_pred cccCCCCCcccccc--------------C---CEEcCCCCeecHHHHHHHHHHCc---CCCCCCcCCCCh
Confidence 46788999999887 1 23579999999999999997633 589999999864
No 31
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-10 Score=82.96 Aligned_cols=46 Identities=26% Similarity=0.751 Sum_probs=35.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPIC 295 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLC 295 (411)
.+...|+||++.|. + + .+|+|||+||.+||++|+...+ ....||+|
T Consensus 13 ~~~~~C~IC~~~~~--------------~-p--~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLK--------------E-P--VIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCS--------------S-C--CCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred ccCCCCccCCcccC--------------c-c--EeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 35678999999987 1 2 2579999999999999976421 23689998
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.98 E-value=6.8e-11 Score=95.72 Aligned_cols=50 Identities=20% Similarity=0.485 Sum_probs=41.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + .+..++|||+||..||.+|+.... ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR--------------D--ARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS--------------S--EEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred CCCCCccCCcccc--------------C--ccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCH
Confidence 5678999999987 1 233389999999999999998763 589999999863
No 33
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=4.9e-10 Score=89.10 Aligned_cols=57 Identities=21% Similarity=0.500 Sum_probs=43.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCCCc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSPDQ 306 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~~q 306 (411)
.....|+||.+.|.+ .+.-..|+|.||.+||.+||.... ..+||+|+..+....++.
T Consensus 13 ~~i~~C~IC~~~i~~----------------g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~~ 69 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ----------------GQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPKS 69 (74)
T ss_dssp SSSCBCSSSCCBCSS----------------SEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCCC
T ss_pred CCCCcCcchhhHccc----------------CCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCCC
Confidence 566789999999872 112238999999999999997652 268999999997654443
No 34
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.96 E-value=1.2e-10 Score=89.24 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=39.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||++.|. + ..+++ |||+||..||++|+.... ...||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCT--------------T---CEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHh--------------C---CeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCC
Confidence 36678999999887 1 22578 999999999999997542 258999999754
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.94 E-value=2.3e-10 Score=87.24 Aligned_cols=52 Identities=21% Similarity=0.593 Sum_probs=41.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCC--CCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ--KSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~--~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + + .+++|||+||.+||.+|+.... .....||+|+..+..
T Consensus 18 ~~~~C~IC~~~~~--------------~-p--~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELLK--------------E-P--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCCS--------------S-C--EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhhC--------------c-c--eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 5678999999887 1 1 2689999999999999997631 113689999999874
No 36
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=91.35 Aligned_cols=49 Identities=22% Similarity=0.648 Sum_probs=39.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + .+..++|||+||..||.+|+... .+||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN--------------I--AMIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS--------------S--EEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred CCCCcccCChhhC--------------C--cCEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCCh
Confidence 4567999999987 1 23234899999999999999864 489999999874
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.92 E-value=2.6e-10 Score=92.65 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=40.9
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+...|+||++.|. + .+..++|||+||..||.+|+... ..||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--------------D--ATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh--------------C--cCEeCCCCChhhHHHHHHHHHhC----CcCcCCCcccccc
Confidence 5678999999987 1 23334999999999999999765 5899999998753
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.92 E-value=2.5e-10 Score=99.06 Aligned_cols=50 Identities=22% Similarity=0.581 Sum_probs=40.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + .+..++|||+||..||++|+.... ..||+|+..+..
T Consensus 53 ~~~~C~IC~~~~~--------------~--p~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK--------------N--TMTTKECLHRFCADCIITALRSGN---KECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS--------------S--EEEETTTCCEEEHHHHHHHHHTTC---CBCTTTCCBCCS
T ss_pred CCCCCcccChHhh--------------C--cCEeCCCCChhHHHHHHHHHHhCc---CCCCCCCCcCCC
Confidence 5568999999987 2 343459999999999999998643 589999999853
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=2e-10 Score=87.51 Aligned_cols=53 Identities=28% Similarity=0.674 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC--CCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT--QKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~--~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + ..+++|||+||.+||++|+... ......||+|+..+..
T Consensus 17 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLT--------------Q---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCS--------------S---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccC--------------C---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 35678999999986 1 1257999999999999999761 0113689999999874
No 40
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.90 E-value=2.2e-10 Score=93.91 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=40.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||++.|. + ..+|+|||+||..||.+|+.+.. ..||+||..+.
T Consensus 13 ~~~~~C~iC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILV--------------E---PVTLPCNHTLCKPCFQSTVEKAS---LCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCS--------------S---CEECTTSCEECHHHHCCCCCTTT---SBCTTTCCBCH
T ss_pred CCCCCCccCCcccC--------------c---eeEcCCCCHHhHHHHHHHHhHCc---CCCCCCCcccC
Confidence 35678999999987 1 23579999999999999997643 68999999985
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.90 E-value=3e-10 Score=92.73 Aligned_cols=56 Identities=27% Similarity=0.596 Sum_probs=43.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|.+. +. ....+..++|||+||..||++|+... .+||+||..+..
T Consensus 70 ~~~~~C~iC~~~~~~~--------~~--~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEI--------VQ--NGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHH--------HH--TTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccc--------cc--cCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCCh
Confidence 4567899999998721 00 12234678999999999999999765 489999999875
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.88 E-value=5.7e-10 Score=87.73 Aligned_cols=50 Identities=22% Similarity=0.683 Sum_probs=40.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||++.|. + ..+++ |||+|+..||++|+.... ...||+||..+.
T Consensus 11 ~~~~~C~IC~~~~~--------------~---p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMT--------------D---AVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECS--------------S---CEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhc--------------C---ceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 46788999999987 1 22678 999999999999997532 258999999973
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=7.8e-10 Score=96.40 Aligned_cols=50 Identities=24% Similarity=0.529 Sum_probs=41.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+...|+||++.|. + ..+++|||+||..||.+|+.... ..||+||..+...
T Consensus 77 ~~~~C~IC~~~~~--------------~---pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVY--------------Q---PVTTECFHNVCKDCLQRSFKAQV---FSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCS--------------S---EEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCTT
T ss_pred cCCEeecCChhhc--------------C---CEEcCCCCchhHHHHHHHHHhCC---CcCCCCCccCCCC
Confidence 4568999999887 1 22579999999999999998643 5899999999754
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.1e-09 Score=88.29 Aligned_cols=51 Identities=22% Similarity=0.671 Sum_probs=40.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + ++ +++|||+||..||.+|+.... ...+||+|+..+..
T Consensus 20 ~~~~C~IC~~~~~--------------~-p~--~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIK--------------E-PV--STKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCS--------------S-CC--BCTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhc--------------C-eE--ECCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCCH
Confidence 4567999999886 1 22 479999999999999997642 22589999998864
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.75 E-value=1.8e-09 Score=89.42 Aligned_cols=50 Identities=20% Similarity=0.506 Sum_probs=41.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + ...++|||+|+..||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALR--------------E---AVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhc--------------C---eEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCH
Confidence 46678999999887 1 23579999999999999998653 489999999875
No 46
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.74 E-value=2.5e-09 Score=87.74 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=40.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEEN 302 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~ 302 (411)
+...|+||++.|. + ...++|||+||..||++|+.... .+||+|+..+...
T Consensus 22 ~~~~C~IC~~~~~--------------~---p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILA--------------D---PVETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCS--------------S---EEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhc--------------C---cEEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHh
Confidence 4568999999987 1 22479999999999999998643 5899999998753
No 47
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.68 E-value=8e-09 Score=81.77 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=40.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.+... | ..+..++|||.|+..||.+++.... ..||+||+.+..
T Consensus 9 ~~~~~CpICle~~~~~------------d-~~~~p~~CGH~fC~~Cl~~~~~~~~---~~CP~CR~~~~~ 62 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID------------D-INFFPCTCGYQICRFCWHRIRTDEN---GLCPACRKPYPE 62 (78)
T ss_dssp CCCCBCTTTCCBCCTT------------T-TTCCSSTTSCCCCHHHHHHHTTSSC---SBCTTTCCBCSS
T ss_pred ccCCcCCccCccCccc------------c-ccccccCCCCCcCHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 4677899999988610 1 1222234999999999999986533 689999999975
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.57 E-value=1.5e-08 Score=101.83 Aligned_cols=49 Identities=20% Similarity=0.439 Sum_probs=39.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|+||++.+. ....++|||+||..||.+|+.... ..||+||..+..
T Consensus 331 ~~~~C~ICle~~~-----------------~pv~lpCGH~FC~~Ci~~wl~~~~---~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAENDK-----------------DVKIEPCGHLMCTSCLTSWQESEG---QGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSBC-----------------CEEEETTCCEECHHHHHHHHHHTC---SBCTTTCCBCCE
T ss_pred CCCCCCccCcCCC-----------------CeEEeCCCChhhHHHHHHHHhcCC---CCCCCCCCccCC
Confidence 3468999998876 245789999999999999997322 589999998864
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=5.5e-09 Score=76.73 Aligned_cols=45 Identities=27% Similarity=0.575 Sum_probs=36.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + ..+|+|||+|+..||.+|. ..||+||..+..
T Consensus 5 ~~~~C~IC~~~~~--------------~---p~~l~CgH~fC~~Ci~~~~-------~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK--------------C---PKLLPCLHTLCSGCLEASG-------MQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB--------------C---CSCSTTSCCSBTTTCSSSS-------SSCSSCCSSSSC
T ss_pred cCCCceEeCCccC--------------C---eEEcCCCCcccHHHHccCC-------CCCCcCCcEeec
Confidence 5678999999887 1 2368999999999999852 479999998864
No 50
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=7.4e-09 Score=85.55 Aligned_cols=46 Identities=26% Similarity=0.751 Sum_probs=38.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. + .+ ++ +|||+|+..||.+|+. ..||+|+..+..
T Consensus 21 ~~~~C~IC~~~~~--------------~--pv-~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILR--------------E--PV-CLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCS--------------S--CB-CCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhh--------------C--cc-EeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 5678999999987 1 23 45 9999999999999996 379999999853
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=88.31 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=39.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|+||++.|. + + + .++|||+|+..||.+|+.... ..||+||..+.
T Consensus 29 ~~~~~C~IC~~~~~--------------~-p-v-~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLR--------------R-P-F-QAQCGHRYCSFCLASILSSGP---QNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCS--------------S-E-E-ECTTSCEEEHHHHHHHGGGSC---EECHHHHHTTC
T ss_pred CcCcCCCCCChhhc--------------C-c-E-ECCCCCccCHHHHHHHHhcCC---CCCCCCCCccc
Confidence 46778999999987 1 2 2 479999999999999997543 58999999763
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.47 E-value=3.4e-08 Score=76.22 Aligned_cols=44 Identities=20% Similarity=0.545 Sum_probs=36.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|.||++.+. ....|||||. |+..|+.+| ..||+||..+..
T Consensus 23 ~~~~C~iC~~~~~-----------------~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNI-----------------AIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCC-----------------CEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 4568999998876 2346799999 999999999 169999998864
No 53
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.45 E-value=5.1e-08 Score=77.44 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=40.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. | + | +++|||+|-..||++|+... .+||+|+..+..
T Consensus 13 ~~~~CpI~~~~m~--------------d-P-V-~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLMT--------------D-P-V-RLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBCS--------------S-E-E-ECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred hheECcccCchhc--------------C-C-e-ECCCCCEECHHHHHHHHhcC----CCCCCCcCCCCh
Confidence 6788999999987 2 2 2 57899999999999999853 589999998864
No 54
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.44 E-value=7.3e-08 Score=79.18 Aligned_cols=49 Identities=20% Similarity=0.374 Sum_probs=40.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
-+...|+||++.|. | | | +++|||+|-..||++|+... .+||+|+..+..
T Consensus 27 p~~~~CpI~~~~m~--------------d-P-V-~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMT--------------D-P-V-RLPSGTIMDRSIILRHLLNS----PTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCS--------------S-E-E-EETTTEEEEHHHHHHHTTSC----SBCSSSCCBCCT
T ss_pred cHhhCCcCccCccc--------------C-C-e-ECCCCCEEchHHHHHHHHcC----CCCCCCCCCCCh
Confidence 36789999999987 1 2 2 57899999999999999753 699999998864
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.42 E-value=9.3e-08 Score=78.32 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.|. | | | +++|| |+|-..||++|+... .+||+|+..+..
T Consensus 21 ~~~~CpI~~~~m~--------------d-P-V-~~~cG~htf~r~cI~~~l~~~----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 21 DEFLDPIMSTLMC--------------D-P-V-VLPSSRVTVDRSTIARHLLSD----QTDPFNRSPLTM 69 (98)
T ss_dssp TTTBCTTTCSBCS--------------S-E-E-ECTTTCCEEEHHHHHHHTTTS----CBCTTTCSBCCT
T ss_pred HhcCCcCcccccc--------------C-C-e-ECCCCCeEECHHHHHHHHHhC----CCCCCCCCCCCh
Confidence 6788999999987 2 2 3 57999 999999999999763 589999998864
No 56
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=5.2e-08 Score=88.32 Aligned_cols=50 Identities=8% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.+. | | | +++|||+|...||++|+.+.. .+||+|+..+..
T Consensus 206 ~~~~~c~i~~~~~~--------------d-P-v-~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMR--------------E-P-C-ITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCS--------------S-E-E-ECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhc--------------C-C-e-ECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCch
Confidence 46789999999987 1 2 2 579999999999999998653 469999998863
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.35 E-value=1e-07 Score=72.01 Aligned_cols=49 Identities=14% Similarity=0.397 Sum_probs=38.7
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|.||++... + +..+ ||||+ |-.+|+++|.... ..||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~--------------~---~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPK--------------N---GCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCS--------------C---EEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCC--------------C---EEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchhc
Confidence 46678999998765 1 2344 99999 6799999999754 489999998864
No 58
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.35 E-value=9.3e-08 Score=83.12 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=41.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|+||++.|. + + + .++|||+|...||.+|+.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~--------------~-p-v-~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR--------------E-A-V-QTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS--------------S-E-E-ECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc--------------C-c-E-ECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcch
Confidence 46788999999987 1 2 2 479999999999999997653 489999999875
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=1.8e-07 Score=75.27 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=38.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeec-CCCHhhHHHHHhhccCCC--CCCCCCcc--cccC
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLS-CRHVFHAECLEQTTPKTQ--KSDPSCPI--CLRL 298 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLP-CGHVFHaeCLeqWL~k~~--~~dptCPL--CR~~ 298 (411)
.....|+||++.|. | .| +++ |||+|-..||++|+...+ ....+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~--------------d--PV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMK--------------K--PV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCS--------------S--EE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhc--------------C--CE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 46788999999987 2 23 565 999999999999997631 12368999 9865
No 60
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.26 E-value=2.3e-07 Score=70.37 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=36.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCC--C---HhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR--H---VFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG--H---VFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
+...|.||++... .+. ++||. | .||.+||++|+.... +.+||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~---------------~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELG---------------NER--FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECS---------------CCC--CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred CCCEeEEeecCCC---------------Cce--ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence 5668999987632 122 57855 4 999999999997532 268999999875
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.24 E-value=2.6e-07 Score=69.64 Aligned_cols=48 Identities=25% Similarity=0.473 Sum_probs=38.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceee--cCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL--SCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL--PCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|.||++... + ..++ ||||+ |-.+|+.+|.... ..||+||..+..
T Consensus 6 ~~~~C~IC~~~~~--------------~---~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPR--------------D---GNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBS--------------C---EEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCC--------------C---eEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhhc
Confidence 5568999998765 1 2344 99998 9999999998654 489999999864
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=3.6e-07 Score=70.32 Aligned_cols=44 Identities=20% Similarity=0.542 Sum_probs=34.9
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|.||++.+. + +..+||||+ |..+|+++. ..||+||..+..
T Consensus 24 ~~~~C~IC~~~~~--------------~---~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNI--------------A---IVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCC--------------C---BCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCC--------------C---EEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 4557999998876 1 336799999 999999754 379999998864
No 63
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.19 E-value=2.6e-07 Score=92.67 Aligned_cols=90 Identities=22% Similarity=0.410 Sum_probs=52.8
Q ss_pred ccccCCCCCh----hhhccc---CCCCCcccccCCCCCCCCccccccccchhccCCCccccccccCCCCCc--eeecCCC
Q 015180 201 AHRWSSASSS----VDFADV---SEPFESESFGQSYVPSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVV--GVLSCRH 271 (411)
Q Consensus 201 ~~~ws~asS~----~dl~di---~E~~~~es~~~~~s~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vV--aVLPCGH 271 (411)
-..|....+- ++++++ +.....+....-........|+||+..+.. .+..+.. .-+.|||
T Consensus 268 l~~Wd~d~si~eNL~~IL~i~~fP~p~~~~~~~~~e~ee~~~ECaICys~~l~-----------~g~lPdk~C~n~~C~h 336 (381)
T 3k1l_B 268 LSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLD-----------GGEVPLVSCDNAKCVL 336 (381)
T ss_dssp HHTCCTTSCHHHHHHHHTTCSSCCCCCGGGCCSCTTCCCSCCSCSSSCCSSCT-----------TCCCCCBCCSCTTCCC
T ss_pred hhhcCccCCHHHHHHHHhCccccCCCcccccccccccccCCccCcccceeecC-----------CCCCccccccCCccCC
Confidence 4578776555 445565 222222211000111356689999988762 1122221 2347999
Q ss_pred HhhHHHHHhhccCCCC-------CCCCCcccccCccc
Q 015180 272 VFHAECLEQTTPKTQK-------SDPSCPICLRLQEE 301 (411)
Q Consensus 272 VFHaeCLeqWL~k~~~-------~dptCPLCR~~~~~ 301 (411)
.||..||.+||..... --.+||.|+..+..
T Consensus 337 ~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 337 KCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 9999999999964210 01479999998864
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.06 E-value=1.1e-06 Score=80.02 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=40.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
-+...|+||++.+. | | | +++|||+|-..||.+|+.... .+||+|+..+..
T Consensus 104 p~~f~CPI~~elm~--------------D-P-V-~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMR--------------E-P-C-ITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCS--------------S-E-E-ECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCG
T ss_pred cHhhcccCccccCC--------------C-C-e-ECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCCh
Confidence 47789999999987 2 2 3 569999999999999997643 379999998864
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.99 E-value=1.5e-06 Score=68.44 Aligned_cols=44 Identities=25% Similarity=0.514 Sum_probs=36.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|.||++.+. .+..+||||+ |-.+|+..|. .||+||..+..
T Consensus 17 ~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~~--------~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEI-----------------NSTFCPCGHTVCCESCAAQLQ--------SCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBC-----------------CEEEETTCBCCBCHHHHTTCS--------BCTTTCCBCCE
T ss_pred CCCEeEEeCcccC-----------------cEEEECCCCHHHHHHHHHhcC--------cCCCCCchhhC
Confidence 3457999998765 2457899999 9999999883 69999999875
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.97 E-value=1.3e-06 Score=69.48 Aligned_cols=52 Identities=23% Similarity=0.461 Sum_probs=38.0
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC----CCCCCCCcc--cccC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT----QKSDPSCPI--CLRL 298 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~----~~~dptCPL--CR~~ 298 (411)
....|+||++.+. +...+..++|||.|..+||.+++... ......||. |+..
T Consensus 4 ~~~~C~IC~~~~~--------------~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYP--------------VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCB--------------GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccc--------------cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4668999999886 11123334799999999999998642 112358999 9988
No 67
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=2.5e-06 Score=65.52 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=36.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.+...|.||++... .+..|||||+ |..+|+... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~-----------------~~v~~pCgH~~~C~~C~~~~--------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTV-----------------NWVLLPCRHTCLCDGCVKYF--------QQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCC-----------------CCEETTTTBCCSCTTHHHHC--------SSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCC-----------------CEEEECCCChhhhHHHHhcC--------CCCCCCCcchhc
Confidence 35678999998755 3557899999 999999942 379999999875
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.85 E-value=2.6e-06 Score=83.87 Aligned_cols=44 Identities=25% Similarity=0.586 Sum_probs=36.9
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCH-hhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV-FHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV-FHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+||++.+. .+..|||||. |...|+..| ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~-----------------~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEV-----------------SVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBC-----------------CEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCC-----------------ceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 5678999998876 2446799999 999999999 169999999864
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.84 E-value=4.4e-06 Score=80.65 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=41.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcc--cccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPI--CLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPL--CR~~~~~ 301 (411)
.....|+||++.|. +.|....|||+|-..||.+|+.... ..+||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~----------------DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYE----------------APLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCS----------------SEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECG
T ss_pred ceeeECcCccCccc----------------CCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCch
Confidence 46678999999997 2344569999999999999997532 258999 9998753
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.73 E-value=6.6e-06 Score=62.32 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=38.1
Q ss_pred CccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...|+||++.+. | .| ++ +|||+|-.+||++|+.+. .+||+++..+..
T Consensus 3 ~~~CpIs~~~m~--------------d--PV-~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~ 50 (61)
T 2bay_A 3 HMLCAISGKVPR--------------R--PV-LSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSI 50 (61)
T ss_dssp -CCCTTTCSCCS--------------S--EE-EETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCG
T ss_pred eEEecCCCCCCC--------------C--CE-EeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCCh
Confidence 357999999987 2 23 55 899999999999999865 379999998864
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.51 E-value=5.1e-05 Score=71.22 Aligned_cols=54 Identities=22% Similarity=0.534 Sum_probs=40.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcccCCC
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEENSP 304 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~~~~ 304 (411)
....|.||.+.+.+. +.=-.|+|.||.+|+.+|+.... ...||.|+..+....|
T Consensus 179 ~i~~C~iC~~iv~~g----------------~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~ 232 (238)
T 3nw0_A 179 AVKICNICHSLLIQG----------------QSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIP 232 (238)
T ss_dssp TCCBCTTTCSBCSSC----------------EECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCC
T ss_pred CCCcCcchhhHHhCC----------------cccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCC
Confidence 467899999887720 11113999999999999997542 3689999999976444
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.19 E-value=0.00011 Score=62.23 Aligned_cols=47 Identities=23% Similarity=0.492 Sum_probs=38.6
Q ss_pred cccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
-|.+|.-++. -..+.+||.|+|-.+|+..|..++. .+||+|+..+..
T Consensus 3 fC~~C~~Pi~----------------iygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIK----------------VYGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCS----------------EEEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCSE
T ss_pred ecCccCCCeE----------------EEeeeccccccHHHHHHHHHHhccC---CCCcCcCCeeee
Confidence 4888887776 2367889999999999999986653 589999999864
No 73
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.46 E-value=0.12 Score=39.85 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.....|.||.+. . + .+.=-.|...||..||+..|.+....+..||.|....
T Consensus 10 ~~~~~C~vC~~~-~--------------~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG-T--------------D--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC-T--------------T--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC-C--------------e--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 456679999743 1 1 1111269999999999988877655568999998654
No 74
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.78 E-value=0.16 Score=42.13 Aligned_cols=52 Identities=23% Similarity=0.524 Sum_probs=32.3
Q ss_pred CCCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhh------------ccCCCCCCCCCccccc
Q 015180 231 PSDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT------------TPKTQKSDPSCPICLR 297 (411)
Q Consensus 231 ~~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW------------L~k~~~~dptCPLCR~ 297 (411)
...+..|.||... +. .+. ..=..|+-+||..||++. +........+||-|..
T Consensus 12 ~~~D~~C~VC~~~-t~------------~~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVW-TA------------ESL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCC-CS------------SCC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccc-cc------------cce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 3577889999643 20 111 112259999999999996 2111223478999944
No 75
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.65 E-value=0.12 Score=39.83 Aligned_cols=55 Identities=18% Similarity=0.461 Sum_probs=35.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|.||.+... +...+.-=.|.-.||..||.--+......+..||.|+....
T Consensus 16 ~~~~~C~~C~~~~~--------------~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD--------------GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS--------------SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC--------------CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 35567999987643 11112112588999999998766543223578999987654
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=89.57 E-value=0.22 Score=35.70 Aligned_cols=31 Identities=26% Similarity=0.628 Sum_probs=23.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
.|.-.||..||+.=+.+....+..||.|+..
T Consensus 20 ~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 20 ECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp TTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 6889999999986655443345789999764
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=85.39 E-value=0.45 Score=35.77 Aligned_cols=31 Identities=29% Similarity=0.716 Sum_probs=24.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
.|--.||..||..-+.+....+..||.|...
T Consensus 28 ~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 28 TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 5888999999998665544446899999763
No 78
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.03 E-value=0.2 Score=36.88 Aligned_cols=49 Identities=22% Similarity=0.550 Sum_probs=33.4
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
.....|.||.+. . + .+.=-.|.-.||..||+.-+.+....+..||.|..
T Consensus 7 ~~~~~C~vC~~~-g--------------~--ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS-G--------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS-S--------------C--CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC-C--------------e--EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356779999753 1 1 12222688999999999766554444578999975
No 79
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=82.76 E-value=1.1 Score=36.85 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 269 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 269 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
|. .-||..||. |......+.-||.|+....
T Consensus 57 C~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~~ 87 (91)
T 1weu_A 57 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 87 (91)
T ss_dssp CSCCCCCSTTTT--CSSCCCSSCCCTTTCCCCS
T ss_pred CCCCCEecccCC--cCcCCCCCEECcCccCcCC
Confidence 66 689999998 4443334578999987654
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.49 E-value=0.37 Score=39.51 Aligned_cols=51 Identities=20% Similarity=0.476 Sum_probs=32.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICL 296 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR 296 (411)
..+..|.||.+.-. ..+.+.=-.|+..||..||+..+.........||-|+
T Consensus 5 ~~~~~C~~C~~~g~--------------~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGD--------------LLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCC--------------TTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCC--------------CcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 36778999976522 0111222369999999999988764333346677765
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=81.94 E-value=0.24 Score=36.95 Aligned_cols=56 Identities=21% Similarity=0.474 Sum_probs=36.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCC-CCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQ-KSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~-~~dptCPLCR~~~~ 300 (411)
.+...|+||.+.+.. +...|.--.|..-||..|+.--..... .....||.|+....
T Consensus 4 ~e~~~C~~C~~~~~~-------------~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAA-------------DEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCS-------------SSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCC-------------CCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 355679999988641 112233336888999999976543211 23478999987544
No 82
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=80.20 E-value=0.68 Score=36.57 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=25.8
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHh-hc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQ-TT 282 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeq-WL 282 (411)
++..|.||++.+. ...+..=+.|+|.|-..||+. |.
T Consensus 2 ee~~C~~C~~~~~--------------~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPA--------------QDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSC--------------CBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCC--------------CCceEECCcCChHHhHHHCHHHhc
Confidence 4568999997643 112222389999999999998 54
No 83
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.20 E-value=0.49 Score=42.73 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=25.3
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.|...||..||..-+......+..||.|+..-
T Consensus 24 ~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 24 KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 48899999999887765444457899999764
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=77.98 E-value=0.47 Score=36.03 Aligned_cols=52 Identities=19% Similarity=0.499 Sum_probs=34.8
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|.||.+. . + .+.=-.|.-.||..||..-+......+..||.|.....
T Consensus 6 ~~~~~C~vC~~~-g--------------~--ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 6 KNEDECAVCRDG-G--------------E--LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp SCCCSBSSSSCC-S--------------S--CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCCccCCCC-C--------------C--EEEcCCCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 356789999753 1 1 11112588999999999765544334578999986554
No 85
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=77.40 E-value=0.44 Score=35.80 Aligned_cols=32 Identities=25% Similarity=0.663 Sum_probs=24.4
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.|.-.||..||..-+......+..||.|....
T Consensus 26 ~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 26 TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 58899999999976655444457899998653
No 86
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.40 E-value=0.34 Score=39.00 Aligned_cols=34 Identities=18% Similarity=0.530 Sum_probs=25.5
Q ss_pred cCCCHhhHHHHHhhccC----CCCCCCCCcccccCccc
Q 015180 268 SCRHVFHAECLEQTTPK----TQKSDPSCPICLRLQEE 301 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k----~~~~dptCPLCR~~~~~ 301 (411)
.|...||..|+..=|.. ....+..|+.|......
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 38 ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 58999999999977652 22345789999876653
No 87
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.20 E-value=0.23 Score=40.34 Aligned_cols=55 Identities=22% Similarity=0.455 Sum_probs=35.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+...|.||.+.-.. ...+.==.|...||..||..=|......+..||.|.....
T Consensus 14 ~~~~~C~vC~~~~~~--------------~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~~ 68 (92)
T 2e6r_A 14 IDSYICQVCSRGDED--------------DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAEC 68 (92)
T ss_dssp CCCCCCSSSCCSGGG--------------GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred cCCCCCccCCCcCCC--------------CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCccc
Confidence 566789999865320 0111111589999999998555443334578999987543
No 88
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=75.67 E-value=0.3 Score=36.31 Aligned_cols=51 Identities=22% Similarity=0.491 Sum_probs=34.3
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.+..|.||.+. . + .+.=-.|.-.||..||..-+......+..||.|.....
T Consensus 4 ~~~~C~vC~~~-g--------------~--ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS-G--------------Q--LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC-S--------------S--CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC-C--------------c--EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999753 1 1 12112689999999999766544334578999976553
No 89
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=73.82 E-value=1 Score=38.01 Aligned_cols=47 Identities=23% Similarity=0.451 Sum_probs=36.3
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..-..|-.|-...+ ..+.|. |.+-..||...|...+ .||||.+.+--
T Consensus 26 ~G~~nCKsCWf~~k-------------------~LV~C~dHYLCl~CLtlmL~~Sd----rCpIC~~pLPt 73 (99)
T 2ko5_A 26 LGPQFCKSCWFENK-------------------GLVECNNHYLCLNCLTLLLSVSN----RCPICKMPLPT 73 (99)
T ss_dssp SCCCCCCSSCSCCS-------------------SEEECSSCEEEHHHHHHTCSSSS----EETTTTEECCC
T ss_pred cCcccChhhccccC-------------------CeeeecchhhHHHHHHHHHhhcc----CCcccCCcCCc
Confidence 45678999964433 244565 9999999999998875 89999999864
No 90
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.64 E-value=0.47 Score=38.86 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=24.7
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.|...||..||+.=+.+....+..||.|..-..
T Consensus 74 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 74 TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred CCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 689999999998766544334578999977543
No 91
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=73.54 E-value=1.5 Score=34.73 Aligned_cols=31 Identities=29% Similarity=0.612 Sum_probs=22.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCC-CCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKSD-PSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~d-ptCPLCR~~ 298 (411)
.|...||..||+.-|.+....+ ..||.|+.+
T Consensus 46 ~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 46 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp TTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCccCcccCCCcccCCCCCCceECcCcccc
Confidence 5889999999997766544444 789999863
No 92
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=72.77 E-value=0.83 Score=41.14 Aligned_cols=32 Identities=25% Similarity=0.600 Sum_probs=24.9
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQ 299 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~ 299 (411)
.|--+||..|+..=+......+..||.|+...
T Consensus 19 ~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 19 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 58889999999876655444457899998764
No 93
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=72.51 E-value=0.85 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.579 Sum_probs=25.7
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.|.-+||..|+..-+......+..||.|+....
T Consensus 21 ~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 21 KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 588999999998877654444578999997653
No 94
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=71.87 E-value=0.65 Score=34.72 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=35.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC---CCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT---QKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~---~~~dptCPLCR~~~~ 300 (411)
.....|.||.+...+ .+...+-=-.|.-.||..|+..-+... ...+..||.|.....
T Consensus 4 ~~~~~C~vC~~~~~~------------~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 4 GSSGVCTICQEEYSE------------APNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCCBSSSCCCCCB------------TTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCC------------CCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 456789999876431 011111112688999999998755320 123478999987543
No 95
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=70.86 E-value=2 Score=33.50 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhh-ccCCCCCCCCCcccccC
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT-TPKTQKSDPSCPICLRL 298 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW-L~k~~~~dptCPLCR~~ 298 (411)
.....|.||.+.-.. .+...+-==.|.-.||..|+.-- +++. +..||.|+..
T Consensus 14 ~~~~~C~vC~~~~s~------------~~~~ll~CD~C~~~~H~~Cl~~~~vP~g---~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQ------------NSNVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCC------------SSSCEEECSSSCCEEEHHHHTCSSCCSS---CCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCC------------CCCCEEECCCCCCccccccCCCCcCCCC---CcCCccCcCc
Confidence 467789999865320 01111111168899999999853 3332 4789999764
No 96
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=68.24 E-value=2.7 Score=32.69 Aligned_cols=30 Identities=23% Similarity=0.568 Sum_probs=21.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 269 CR-HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 269 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
|. ..||..||. |......+.-||.|+....
T Consensus 37 C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 37 CSIEWFHFACVG--LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp CSCCCEETTTTT--CSSCCSSCCCCTTTSSCSS
T ss_pred CCCccEecccCC--cCcCCCCCEECCCCCcccc
Confidence 66 689999998 4443334578999987654
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=68.07 E-value=1.3 Score=36.59 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=23.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCccccc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
.|...||..||+.-|.+....+..||.|+.
T Consensus 82 ~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 82 SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 589999999998777655444578999975
No 98
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.69 E-value=3.6 Score=32.05 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=23.1
Q ss_pred cCCCHhhHHHHHhhccC-----CCCCCCCCcccccCccc
Q 015180 268 SCRHVFHAECLEQTTPK-----TQKSDPSCPICLRLQEE 301 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k-----~~~~dptCPLCR~~~~~ 301 (411)
.|..-||..|+.---.. .......||.|+.....
T Consensus 37 ~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~ 75 (78)
T 1wew_A 37 RCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGP 75 (78)
T ss_dssp TTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSC
T ss_pred cCCccccCEEEccccccccccccCCCCEECCCCCcccCC
Confidence 68899999999653321 11124789999876543
No 99
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=66.55 E-value=1.9 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.610 Sum_probs=25.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.|--+||..||+.=+......+..||.|...-.
T Consensus 42 ~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~ 74 (88)
T 1fp0_A 42 QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 74 (88)
T ss_dssp TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCS
T ss_pred CCCCceecccCCCCCCCCcCCCcCCccccCCCc
Confidence 588889999998877654445688999987643
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.75 E-value=1.2 Score=35.16 Aligned_cols=30 Identities=27% Similarity=0.592 Sum_probs=22.6
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCccccc
Q 015180 268 SCRHVFHAECLEQTTPKTQKS-DPSCPICLR 297 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~ 297 (411)
.|...||..||+.=|...... +..||.|..
T Consensus 46 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 46 ECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999999999655543333 578999975
No 101
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=64.77 E-value=0.57 Score=38.97 Aligned_cols=34 Identities=26% Similarity=0.641 Sum_probs=25.5
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.|...||..||+.=|......+..||.|...+..
T Consensus 78 ~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 111 (114)
T 2kwj_A 78 DCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111 (114)
T ss_dssp SSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHH
T ss_pred CCCccccccccCCCccCCCCCCeECccccchhhc
Confidence 6899999999996555443345789999876653
No 102
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.18 E-value=2.4 Score=34.16 Aligned_cols=51 Identities=24% Similarity=0.465 Sum_probs=33.2
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceee---cCCCHhhHHHHHhh-ccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL---SCRHVFHAECLEQT-TPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL---PCGHVFHaeCLeqW-L~k~~~~dptCPLCR~~~~ 300 (411)
.....|.||.+.-. + +.-.+| .|.-.||..|+..- +++. +.-||.|.....
T Consensus 23 ~~~~~C~vC~~~~s--------------~-~~~~ll~CD~C~~~fH~~Cl~p~~vP~g---~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGES--------------Q-NSNVILFCDMCNLAVHQECYGVPYIPEG---QWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSS--------------C-SEEEEEECSSSCCCCCHHHHTCSSCCSS---CCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCC--------------C-CCCCEEECCCCCchhhcccCCCCccCCC---ceECccccCccc
Confidence 35678999986532 0 011122 58889999999854 3333 478999987654
No 103
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=62.89 E-value=1.6 Score=35.56 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=21.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
.|.-.||..|+.--+... ..+..||.|+..
T Consensus 47 ~C~~w~H~~C~~~~~~~~-p~~w~C~~C~~~ 76 (98)
T 2lv9_A 47 KCSVWQHIDCMGIDRQHI-PDTYLCERCQPR 76 (98)
T ss_dssp TTCBEEETTTTTCCTTSC-CSSBCCTTTSSS
T ss_pred CCCCcCcCcCCCCCccCC-CCCEECCCCcCC
Confidence 688999999997543322 124789999743
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=62.73 E-value=3.9 Score=31.56 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=23.0
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~~ 298 (411)
.|...||..||+.=|.+.... +..||.|+..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSCC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccCc
Confidence 588999999999655543333 5789999854
No 105
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=61.74 E-value=9.4 Score=31.95 Aligned_cols=57 Identities=21% Similarity=0.398 Sum_probs=41.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
...+.|.||.+++-- ...++ .-|+---|+--.-.-|++--..+.+ ..||.|+..|..
T Consensus 14 ~~~qiCqiCGD~VG~---------~~~Ge-~FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGL---------TVEGD-LFVACNECGFPACRPCYEYERREGT---QNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCB---------CSSSS-BCCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCCC
T ss_pred cCCCccccccCcccc---------CCCCC-EEEeeeccCChhhHHHHHHHHhccC---ccccccCCcccc
Confidence 466899999998751 11222 2244556887888999998887765 699999999975
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=60.09 E-value=1.9 Score=33.22 Aligned_cols=53 Identities=21% Similarity=0.535 Sum_probs=31.9
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC-----CCCCCCCcccccCccc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-----QKSDPSCPICLRLQEE 301 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-----~~~dptCPLCR~~~~~ 301 (411)
...| ||.+... +...|.=-.|.--||..|+.--.... ......||.|+...+.
T Consensus 16 ~~~C-~C~~~~~--------------~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 16 ALYC-ICRQPHN--------------NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCCS-TTCCCCC--------------SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred CCEE-ECCCccC--------------CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 3457 8987754 11223333699999999996432210 0123789999876654
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=56.33 E-value=6.2 Score=34.80 Aligned_cols=30 Identities=20% Similarity=0.544 Sum_probs=22.0
Q ss_pred cCCCHhhHHHHHhhccC-------CCCCCCCCccccc
Q 015180 268 SCRHVFHAECLEQTTPK-------TQKSDPSCPICLR 297 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k-------~~~~dptCPLCR~ 297 (411)
.|--+||..||+.=+.. ....+..||+|..
T Consensus 80 ~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 80 FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 68899999999966531 1223588999974
No 108
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=55.23 E-value=0.94 Score=41.21 Aligned_cols=55 Identities=16% Similarity=0.405 Sum_probs=33.4
Q ss_pred CccccccccchhccCCCccccccccCCC--CCceeecCCCHhhHHHHHhhcc---C-C---CCCCCCCcccccCcc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDM--PVVGVLSCRHVFHAECLEQTTP---K-T---QKSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~--~vVaVLPCGHVFHaeCLeqWL~---k-~---~~~dptCPLCR~~~~ 300 (411)
+..|+||.+.+.. ++. ..|.=-.|..-||..|+.---. . . ......||.|+....
T Consensus 2 G~~CpiC~k~Y~~------------~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDD------------DDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTT------------CCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCC------------cccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4569999998872 111 1222226889999999853210 0 0 001368999998765
No 109
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.91 E-value=6.4 Score=30.57 Aligned_cols=53 Identities=19% Similarity=0.422 Sum_probs=32.3
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCC-CCCCCCCcccccCcc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKT-QKSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~-~~~dptCPLCR~~~~ 300 (411)
...| ||...+.. +...|.--.|.--||..|+.--.... ......||.|+...+
T Consensus 12 ~~~C-~C~~~~d~-------------~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNV-------------NHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCS-------------SSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCC-------------CCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3446 99887641 11223333688899999996433211 113478999998654
No 110
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=54.50 E-value=2.3 Score=36.99 Aligned_cols=54 Identities=17% Similarity=0.506 Sum_probs=32.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccC-CCCCCCCCcccccCcc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPK-TQKSDPSCPICLRLQE 300 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k-~~~~dptCPLCR~~~~ 300 (411)
....| ||...... +...+.-=.|.-.||..|+.--... .......||.|+..-.
T Consensus 7 ~~~~C-~C~~~~~~-------------~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 7 TKLYC-ICKTPEDE-------------SKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp CCEET-TTTEECCT-------------TSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCcEe-eCCCCCCC-------------CCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 45678 99887541 1112222268899999999643221 1122478999997653
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=53.97 E-value=1.2 Score=36.86 Aligned_cols=54 Identities=28% Similarity=0.627 Sum_probs=32.3
Q ss_pred CccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCcccccCcc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~dptCPLCR~~~~ 300 (411)
...|+||.+.+.. +..-+.== .|.--||.+|+.---.. .......||.|+....
T Consensus 3 ~~~C~iC~~p~~~-------------~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVND-------------DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCT-------------TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCC-------------CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 3579999998751 11111111 57888999998643210 0112368999998654
No 112
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=52.28 E-value=3 Score=39.38 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=20.4
Q ss_pred cCCCHhhHHHHHhhccCCCCC-CCCCcccccC
Q 015180 268 SCRHVFHAECLEQTTPKTQKS-DPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~-dptCPLCR~~ 298 (411)
-|...||..||+.=|...... +..||.|...
T Consensus 194 ~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 194 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp SSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CCCcceeCccCCCCcccCCCCCCCCCcCCcCc
Confidence 588999999999666544333 5789999754
No 113
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=49.35 E-value=4.1 Score=33.76 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=29.5
Q ss_pred ccccccccchhccCCCccccccccCCC-CCceeecCCCHhhHHHHHhhcc---CCCCCCCCCcccc
Q 015180 235 FKCGLCERFLSQRSPWSSRRIVRSGDM-PVVGVLSCRHVFHAECLEQTTP---KTQKSDPSCPICL 296 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~-~vVaVLPCGHVFHaeCLeqWL~---k~~~~dptCPLCR 296 (411)
..|.||+..-.+. + +.++. +.+.=-.|+..||..||+.... .....+..||-|+
T Consensus 2 ~~C~~C~~~~~~n------~--k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMN------K--KSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBC------T--TTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCcccc------c--cCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4699998764310 0 01111 2232336999999999986532 1111235677764
No 114
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=48.95 E-value=12 Score=30.85 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=29.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhh------ccCCCCCCCCCcccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQT------TPKTQKSDPSCPICL 296 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqW------L~k~~~~dptCPLCR 296 (411)
....|.||+..=.+. + .....+.+.=-.|+..||..||+.+ +++. +..||-|+
T Consensus 4 p~~~C~~C~~~~~~~------~--~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQN------R--EKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCC------T--TSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred cCccccccCCchhhC------c--CCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 345799998653210 0 0011122333369999999999642 2222 36677775
No 115
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=47.18 E-value=2.2 Score=32.69 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.8
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.|.--||..|+.--..........||.|+....
T Consensus 36 ~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ 68 (72)
T 1wee_A 36 GCGVWHHTRCIGINNADALPSKFLCFRCIELSG 68 (72)
T ss_dssp SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCS
T ss_pred CCCCccCCeeeccCccccCCCcEECCCccCCCC
Confidence 688889999997653222223478999986543
No 116
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.21 E-value=8.3 Score=29.81 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=19.8
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 271 HVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 271 HVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.-||.+|+.- .........||.|+....
T Consensus 30 ~WfH~~Cvgl--~~~p~~~w~Cp~C~~~~~ 57 (70)
T 1x4i_A 30 EWFHYGCVGL--TEAPKGKWYCPQCTAAMK 57 (70)
T ss_dssp CCEEHHHHTC--SSCCSSCCCCHHHHHHHH
T ss_pred cCCccccccc--CcCCCCCEECCCCCcccc
Confidence 6899999983 333233478999987653
No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=45.71 E-value=3.2 Score=31.91 Aligned_cols=51 Identities=16% Similarity=0.427 Sum_probs=31.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccC
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
.+...| ||.+... +...|.=-.|.--||..|+.---... .....||.|+..
T Consensus 17 ~~~~~C-iC~~~~~--------------~~~MIqCd~C~~WfH~~Cvgi~~~~~-~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFA--------------GRPMIECNECHTWIHLSCAKIRKSNV-PEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCT--------------TCCEEECTTTCCEEETTTTTCCTTSC-CSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCC--------------CCCEEECCCCCccccccccCcCcccC-CCcEECCCCCCC
Confidence 355678 9987654 11123333589999999997543211 234789999753
No 118
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=44.01 E-value=9.1 Score=42.90 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=38.6
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCC-CHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCR-HVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCG-HVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
+...|+|-++.+. | .| ++|.| ++|-..+|++||... ++||+=+..+..
T Consensus 890 ~~F~cPIs~~lM~--------------D--PV-ilpsG~~TydR~~I~~wl~~~----~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMK--------------D--PV-ILPASKMNIDRSTIKAHLLSD----STDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCS--------------S--EE-ECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCG
T ss_pred HHhCCcchhhHHh--------------C--Ce-EcCCCCEEECHHHHHHHHhcC----CCCCCCCCCCCc
Confidence 6788999988876 2 23 67998 689999999999763 599999888864
No 119
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=42.02 E-value=10 Score=38.18 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=24.5
Q ss_pred CceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 263 VVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 263 vVaVLPCGHV--FHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.++-..|.|+ |-++-+-+...+. ....||+|.+.+.
T Consensus 262 PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 262 PSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIA 299 (371)
T ss_dssp EEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCC
T ss_pred cCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccC
Confidence 4667789998 6665555544332 2478999999884
No 120
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=41.09 E-value=2.2 Score=32.50 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=18.5
Q ss_pred cCCCHhhHHHHHhhccCCC----CCCCCCccccc
Q 015180 268 SCRHVFHAECLEQTTPKTQ----KSDPSCPICLR 297 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~----~~dptCPLCR~ 297 (411)
.|.--||..|+.---.... .....||.||.
T Consensus 31 ~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 31 RCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp TTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3888899999853211110 01367999985
No 121
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.53 E-value=4.1 Score=30.49 Aligned_cols=27 Identities=26% Similarity=0.673 Sum_probs=19.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 015180 269 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 269 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
|. ..||..|+. |......+..||.|+.
T Consensus 31 C~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 31 CSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 55 689999998 5444334578999975
No 122
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=37.02 E-value=14 Score=37.16 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=32.6
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCH--hhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHV--FHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHV--FHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
..|+|=...+. -.++-..|.|+ |-++=+-+...+. ....||+|.+.+.
T Consensus 216 L~CPlS~~ri~----------------~P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT----------------IPCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS----------------SEEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred eeCCCccceec----------------cCCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence 45777666655 24666789998 7766655554432 2478999999885
No 123
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=36.95 E-value=9.8 Score=25.70 Aligned_cols=13 Identities=23% Similarity=0.698 Sum_probs=9.8
Q ss_pred CCCCCCCCccccc
Q 015180 82 LSQGPQWTPPAIQ 94 (411)
Q Consensus 82 ~~q~~~w~~p~~q 94 (411)
...+|-|||||-.
T Consensus 11 ~i~A~vW~PPME~ 23 (29)
T 3brd_D 11 MINASVWMPPMEN 23 (29)
T ss_pred eecccccCCCccC
Confidence 3568999999743
No 124
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=36.92 E-value=2.2 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=27.9
Q ss_pred cccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccCCCCCCCCCcccc
Q 015180 236 KCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPKTQKSDPSCPICL 296 (411)
Q Consensus 236 ~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k~~~~dptCPLCR 296 (411)
.|.||.+++.. +..-|.-- .|.-=||..|+.--.......+..||.|+
T Consensus 4 ~cc~C~~p~~~-------------~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKD-------------KVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCT-------------TCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCC-------------CCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 48889887641 11223333 57778999998754322111236899985
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.18 E-value=11 Score=31.59 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=22.2
Q ss_pred cCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 268 SCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 268 PCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.|--+||..||. |......+..||-|.-..-.
T Consensus 34 ~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 34 DCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp TCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 377899999998 54433344679988755543
No 126
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=34.91 E-value=5 Score=30.04 Aligned_cols=27 Identities=30% Similarity=0.762 Sum_probs=19.8
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCccccc
Q 015180 269 CR-HVFHAECLEQTTPKTQKSDPSCPICLR 297 (411)
Q Consensus 269 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~ 297 (411)
|. .-||..|+. |......+..||.|+.
T Consensus 30 C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 30 CPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCCEecccCC--cccCCCCCEECcCccC
Confidence 66 689999998 4443334578999975
No 127
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.44 E-value=13 Score=27.65 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
....|+.|.+.+. +... +..-+..||.+|+ .|-.|...+..
T Consensus 8 ~~~~C~~C~~~I~--------------~~~~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVY--------------FAEK--VSSLGKDWHKFCL------------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCC--------------TTTE--EEETTEEEETTTC------------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeE--------------CCeE--EEECCeEeeCCCC------------CCCCCCCccCC
Confidence 4567999998876 2222 3355788998773 58888887763
No 128
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=32.12 E-value=18 Score=31.47 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=21.3
Q ss_pred cCCCHhhHHHHHhhc-----cCC--CCCCCCCcccccC
Q 015180 268 SCRHVFHAECLEQTT-----PKT--QKSDPSCPICLRL 298 (411)
Q Consensus 268 PCGHVFHaeCLeqWL-----~k~--~~~dptCPLCR~~ 298 (411)
.|-.+||.+||..=+ .+. ...+..|++|...
T Consensus 74 ~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 74 FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 588999999999642 111 1234789999653
No 129
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=31.54 E-value=6.1 Score=29.88 Aligned_cols=28 Identities=29% Similarity=0.571 Sum_probs=19.9
Q ss_pred CC-CHhhHHHHHhhccCCCCCCCCCcccccC
Q 015180 269 CR-HVFHAECLEQTTPKTQKSDPSCPICLRL 298 (411)
Q Consensus 269 CG-HVFHaeCLeqWL~k~~~~dptCPLCR~~ 298 (411)
|. .-||..|+. |.........||.|+..
T Consensus 32 C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 32 CPIEWFHFSCVS--LTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp CSSCEEETGGGT--CSSCCSSCCCCHHHHTC
T ss_pred CCcccEecccCC--cCcCCCCCEECcCcccC
Confidence 55 799999998 33333335789999764
No 130
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=30.85 E-value=21 Score=30.30 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=17.2
Q ss_pred ecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 267 LSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 267 LPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
..||++| .+.. .+ ...||.|+....+
T Consensus 71 ~~CG~~F----~~~~-~k----PsrCP~CkSe~Ie 96 (105)
T 2gmg_A 71 RKCGFVF----KAEI-NI----PSRCPKCKSEWIE 96 (105)
T ss_dssp TTTCCBC----CCCS-SC----CSSCSSSCCCCBC
T ss_pred hhCcCee----cccC-CC----CCCCcCCCCCccC
Confidence 3699999 1221 11 2579999998875
No 131
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=30.46 E-value=19 Score=27.42 Aligned_cols=52 Identities=23% Similarity=0.551 Sum_probs=30.7
Q ss_pred CCccccccccchhccCCCccccccccCCCCCceee-cCCCHhhHHHHHhhccC------CCCCCCCCccccc
Q 015180 233 DTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVL-SCRHVFHAECLEQTTPK------TQKSDPSCPICLR 297 (411)
Q Consensus 233 ~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVL-PCGHVFHaeCLeqWL~k------~~~~dptCPLCR~ 297 (411)
....|++|.+++.. +...|.-- .|.--||..|+.---.. .......||.|.+
T Consensus 7 ~~~~C~~C~~p~~~-------------~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVND-------------DQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCT-------------TSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCC-------------CCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 45679999998761 22223333 68888999998543211 1111357998863
No 132
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.57 E-value=32 Score=27.99 Aligned_cols=39 Identities=21% Similarity=0.491 Sum_probs=23.3
Q ss_pred CccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 234 TFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 234 ~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
...|+-|.+.+. +...+ ..-+..||.+|+ .|-.|...+.
T Consensus 5 ~~~C~~C~~~I~--------------~~~~~--~a~~~~wH~~CF------------~C~~C~~~L~ 43 (122)
T 1m3v_A 5 WKRCAGCGGKIA--------------DRFLL--YAMDSYWHSRCL------------KCSSCQAQLG 43 (122)
T ss_dssp CCCBSSSSSCCC--------------SSCCE--EETTEEECHHHH------------CCSSSCCCTT
T ss_pred CCCCcccCCEeC--------------CcEEE--EECCceeHhhCC------------CcCCCCCccc
Confidence 456888877765 22222 234777888884 3666666653
No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.25 E-value=10 Score=31.00 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=17.8
Q ss_pred CHhhHHHHHhhccCCCCCCCCCcc-ccc
Q 015180 271 HVFHAECLEQTTPKTQKSDPSCPI-CLR 297 (411)
Q Consensus 271 HVFHaeCLeqWL~k~~~~dptCPL-CR~ 297 (411)
--||..||. |......+.-||. |+.
T Consensus 50 eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 50 EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 689999997 3333233578999 974
No 134
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.01 E-value=14 Score=28.12 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=28.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+.|.+.+. +...+ ..=+.+||.+|+ .|-.|...+..
T Consensus 13 ~~~~~C~~C~~~I~--------------~~e~v--~a~~~~wH~~CF------------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLY--------------VLERL--CVNGHFFHRSCF------------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCC--------------TTTBC--CBTTBCCBTTTC------------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcc--------------cceEE--EECCCeeCCCcC------------EEcCCCCCcCC
Confidence 45678999998875 12222 245788998883 47777777653
No 135
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.34 E-value=12 Score=28.79 Aligned_cols=41 Identities=20% Similarity=0.498 Sum_probs=28.6
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+.|.+.+. + .. +..-|..||.+|+ .|-.|.+.+..
T Consensus 23 ~~~~~C~~C~~~I~--------------~-~~--v~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (90)
T 2dar_A 23 KRTPMCAHCNQVIR--------------G-PF--LVALGKSWHPEEF------------NCAHCKNTMAY 63 (90)
T ss_dssp TCCCBBSSSCCBCC--------------S-CE--EEETTEEECTTTC------------BCSSSCCBCSS
T ss_pred CCCCCCccCCCEec--------------c-eE--EEECCccccccCC------------ccCCCCCCCCC
Confidence 35568999998875 1 12 3356889998874 58888887764
No 136
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=26.27 E-value=13 Score=25.74 Aligned_cols=14 Identities=36% Similarity=0.733 Sum_probs=11.7
Q ss_pred CCCccccccccchh
Q 015180 232 SDTFKCGLCERFLS 245 (411)
Q Consensus 232 ~~~~~CaICle~L~ 245 (411)
.+++.|+||++.|.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 35689999999986
No 137
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=15 Score=27.96 Aligned_cols=41 Identities=17% Similarity=0.489 Sum_probs=28.1
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|+-|.+.+. +...+ ..=+..||.+|+ .|-.|...+.
T Consensus 13 ~~~~~C~~C~~~I~--------------~~~~v--~a~~~~wH~~CF------------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIK--------------HGQSL--LALDKQWHVSCF------------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCS--------------SSCCE--EETTEEECTTTC------------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeC--------------CCeEE--EECCcccccccC------------CcCcCCCCcC
Confidence 45678999998876 22233 235788998773 5778887775
No 138
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=25.11 E-value=13 Score=24.44 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=18.0
Q ss_pred ccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHH
Q 015180 235 FKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECL 278 (411)
Q Consensus 235 ~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCL 278 (411)
..|+.|.+.+-. . -.+..=|.+||..|.
T Consensus 4 ~~C~~C~k~Vy~--------------~--Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYP--------------T--EKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCG--------------G--GCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEec--------------c--eeEEECCeEecccCC
Confidence 479999887651 1 112244788998883
No 139
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=22.93 E-value=23 Score=27.65 Aligned_cols=40 Identities=15% Similarity=0.390 Sum_probs=22.2
Q ss_pred HhhccCCCCCCCCCcccccCcccCCCCcchh-------hhhcccCCccccc
Q 015180 279 EQTTPKTQKSDPSCPICLRLQEENSPDQQVF-------SRLKNSFPRLRQS 322 (411)
Q Consensus 279 eqWL~k~~~~dptCPLCR~~~~~~~~~qp~~-------~~lr~~~p~l~~~ 322 (411)
+.||... ..||+|+..+.-...++.++ .-+++++|.|-..
T Consensus 2 d~~LLei----L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (69)
T 2pk7_A 2 DTKLLDI----LACPICKGPLKLSADKTELISKGAGLAYPIRDGIPVMLES 48 (69)
T ss_dssp -CCGGGT----CCCTTTCCCCEECTTSSEEEETTTTEEEEEETTEECCCGG
T ss_pred ChHHHhh----eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcCCeeeeChh
Confidence 4455443 48999999886433333333 3345555555543
No 140
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.69 E-value=34 Score=26.14 Aligned_cols=41 Identities=22% Similarity=0.367 Sum_probs=28.9
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE 301 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~ 301 (411)
.....|+.|.+.+. + .. +..-+..||.+|+ .|-.|.+.+..
T Consensus 23 ~~~~~C~~C~~~I~--------------~-~~--~~a~~~~~H~~CF------------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIV--------------G-AV--VKARDKYRHPECF------------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCC--------------S-CC--EESSSCEECTTTC------------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEec--------------c-cE--EEECCceECccCC------------EecCCCCCCCC
Confidence 35578999998876 2 12 3356789998873 57788887753
No 141
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.40 E-value=16 Score=30.38 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=29.0
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCcc
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQE 300 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~ 300 (411)
.....|+-|.+.+. +.. .+..-+..||.+|+ .|-.|...+.
T Consensus 59 ~~~~~C~~C~~~I~--------------~~~--~v~a~~~~wH~~CF------------~C~~C~~~L~ 99 (123)
T 2l4z_A 59 LSWKRCAGCGGKIA--------------DRF--LLYAMDSYWHSRCL------------KCSSCQAQLG 99 (123)
T ss_dssp SSCSBBSSSSSBCC--------------SSS--EEEETTEEEETTTS------------BCTTTCCBGG
T ss_pred ccCCcCcCCCCCcC--------------CcE--EEEeCCcEEccccc------------CcCcCCCccc
Confidence 34578999998876 221 23356889998883 5888888875
No 142
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.61 E-value=6.3 Score=34.93 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCccccccccchhccCCCccccccccCCCCCceeecCCCHhhHHHHHhhccCCCCCCCCCcccccCccc-CCCCcchhh
Q 015180 232 SDTFKCGLCERFLSQRSPWSSRRIVRSGDMPVVGVLSCRHVFHAECLEQTTPKTQKSDPSCPICLRLQEE-NSPDQQVFS 310 (411)
Q Consensus 232 ~~~~~CaICle~L~qrsP~~s~~iv~~~D~~vVaVLPCGHVFHaeCLeqWL~k~~~~dptCPLCR~~~~~-~~~~qp~~~ 310 (411)
.....|++|...|.- -+...+.=..|.|-+-..|- .|+.+. ...-|-+|...-.- .-+.+|.+-
T Consensus 66 ~~~~~C~~C~~~fg~------------l~~~g~~C~~C~~~VC~~C~-~~~~~~--~~W~C~vC~k~rel~~kSGeWf~~ 130 (153)
T 2zet_C 66 LNETHCARCLQPYRL------------LLNSRRQCLECSLFVCKSCS-HAHPEE--QGWLCDPCHLARVVKIGSLEWYYQ 130 (153)
T ss_dssp GGGTBCTTTCCBGGG------------CSSCCEECTTTCCEECGGGE-ECCSSS--SSCEEHHHHHHHHHHHHHCHHHHH
T ss_pred CCCccchhhcCcccc------------ccCCCCcCCCCCchhhcccc-cccCCC--CcEeeHHHHHHHHHHHhccHHHHH
Confidence 357789999999861 12222223479999999998 355433 34789999988642 245677787
Q ss_pred hhcccCCccc
Q 015180 311 RLKNSFPRLR 320 (411)
Q Consensus 311 ~lr~~~p~l~ 320 (411)
.++++|+++-
T Consensus 131 ~~~~rfk~~g 140 (153)
T 2zet_C 131 HVRARFKRFG 140 (153)
T ss_dssp HHHTTSSSCH
T ss_pred HHHhhhccCc
Confidence 7887777553
No 143
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=20.04 E-value=15 Score=27.42 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=9.2
Q ss_pred CCCcccccCcc
Q 015180 290 PSCPICLRLQE 300 (411)
Q Consensus 290 ptCPLCR~~~~ 300 (411)
..||+|+..+.
T Consensus 11 L~CP~c~~~L~ 21 (56)
T 2kpi_A 11 LACPACHAPLE 21 (56)
T ss_dssp CCCSSSCSCEE
T ss_pred eeCCCCCCcce
Confidence 48999999865
Done!