Query 015181
Match_columns 411
No_of_seqs 241 out of 1478
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 3E-115 7E-120 872.4 34.1 387 21-410 32-421 (524)
2 PLN02849 beta-glucosidase 100.0 1E-106 3E-111 833.2 37.2 390 5-409 7-398 (503)
3 PLN02814 beta-glucosidase 100.0 1E-106 2E-111 834.2 36.1 377 21-409 23-400 (504)
4 PLN02998 beta-glucosidase 100.0 4E-106 9E-111 828.4 36.7 382 18-409 23-405 (497)
5 COG2723 BglB Beta-glucosidase/ 100.0 2E-104 5E-109 789.5 34.4 361 24-410 2-369 (460)
6 PRK09593 arb 6-phospho-beta-gl 100.0 2E-101 4E-106 792.7 34.9 359 23-409 3-381 (478)
7 PRK13511 6-phospho-beta-galact 100.0 3E-101 6E-106 792.2 34.5 365 24-409 3-381 (469)
8 TIGR01233 lacG 6-phospho-beta- 100.0 6E-101 1E-105 787.7 36.3 361 24-409 2-380 (467)
9 PF00232 Glyco_hydro_1: Glycos 100.0 2E-102 4E-107 801.4 24.0 364 23-410 2-369 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 1E-100 3E-105 786.1 35.5 357 25-409 3-380 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 7E-100 2E-104 780.2 36.7 360 21-409 1-381 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2.9E-99 6E-104 774.3 35.1 357 25-409 3-378 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4.1E-98 9E-103 760.8 35.0 350 26-409 1-350 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 4.1E-12 8.9E-17 128.2 9.0 109 79-191 10-141 (374)
15 PF00150 Cellulase: Cellulase 99.3 1.7E-11 3.8E-16 117.7 9.3 109 80-191 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 99.1 4.3E-09 9.2E-14 100.7 19.3 83 100-190 1-85 (254)
17 PF07745 Glyco_hydro_53: Glyco 98.8 2.6E-07 5.7E-12 91.1 18.7 205 82-409 27-242 (332)
18 COG1874 LacA Beta-galactosidas 98.5 2.7E-07 5.8E-12 98.1 8.2 118 80-201 31-175 (673)
19 COG2730 BglC Endoglucanase [Ca 98.1 1E-05 2.2E-10 82.7 9.3 109 82-190 76-193 (407)
20 PF01229 Glyco_hydro_39: Glyco 97.9 3.4E-05 7.4E-10 80.7 9.2 106 81-191 41-168 (486)
21 COG3867 Arabinogalactan endo-1 97.9 0.0016 3.4E-08 62.4 19.2 136 24-190 33-183 (403)
22 PRK10150 beta-D-glucuronidase; 97.9 0.00061 1.3E-08 73.2 18.5 94 79-189 313-419 (604)
23 PF00331 Glyco_hydro_10: Glyco 97.9 6.9E-05 1.5E-09 74.2 10.2 123 26-191 6-137 (320)
24 PF01301 Glyco_hydro_35: Glyco 97.7 0.00011 2.4E-09 72.7 8.3 108 80-188 25-150 (319)
25 PLN03059 beta-galactosidase; P 97.2 0.0019 4.1E-08 70.5 10.8 107 80-188 60-187 (840)
26 PF01373 Glyco_hydro_14: Glyco 97.2 0.00078 1.7E-08 67.6 6.5 106 78-189 15-151 (402)
27 PLN02161 beta-amylase 97.0 0.0019 4.1E-08 66.2 7.9 111 75-190 113-262 (531)
28 PLN02803 beta-amylase 97.0 0.0027 5.8E-08 65.4 8.6 107 79-190 107-252 (548)
29 PLN00197 beta-amylase; Provisi 97.0 0.0032 6.9E-08 65.1 8.8 107 79-190 127-272 (573)
30 PF14587 Glyco_hydr_30_2: O-Gl 96.9 0.0023 4.9E-08 64.0 7.3 99 90-190 58-185 (384)
31 COG3693 XynA Beta-1,4-xylanase 96.9 0.0027 5.9E-08 61.6 7.3 87 98-190 65-153 (345)
32 PLN02801 beta-amylase 96.8 0.0067 1.4E-07 62.3 9.8 100 77-179 35-173 (517)
33 PF13204 DUF4038: Protein of u 96.8 0.014 3E-07 57.0 11.7 101 83-188 34-156 (289)
34 PLN02905 beta-amylase 96.7 0.0091 2E-07 62.6 9.7 101 75-178 282-421 (702)
35 PLN02705 beta-amylase 96.6 0.0083 1.8E-07 62.7 8.7 99 77-178 266-403 (681)
36 PF02836 Glyco_hydro_2_C: Glyc 96.6 0.018 3.9E-07 56.3 10.5 93 77-188 34-132 (298)
37 KOG0496 Beta-galactosidase [Ca 95.5 0.061 1.3E-06 56.9 9.1 108 80-189 50-176 (649)
38 PF14488 DUF4434: Domain of un 95.3 0.16 3.4E-06 45.4 9.9 102 79-189 20-131 (166)
39 PRK09525 lacZ beta-D-galactosi 93.2 0.4 8.7E-06 54.8 9.5 91 77-189 369-464 (1027)
40 PRK10340 ebgA cryptic beta-D-g 92.0 0.67 1.5E-05 53.0 9.4 90 78-189 354-451 (1021)
41 COG3250 LacZ Beta-galactosidas 90.3 1.6 3.4E-05 48.5 9.8 91 75-190 317-409 (808)
42 COG3664 XynB Beta-xylosidase [ 89.9 0.5 1.1E-05 47.6 5.1 101 88-193 14-119 (428)
43 COG3934 Endo-beta-mannanase [C 87.8 0.23 5E-06 50.9 1.1 110 80-190 27-150 (587)
44 smart00642 Aamy Alpha-amylase 86.4 1.9 4.2E-05 38.4 6.2 63 77-139 17-90 (166)
45 PLN02361 alpha-amylase 82.6 3 6.4E-05 42.7 6.3 64 76-139 26-96 (401)
46 PF10566 Glyco_hydro_97: Glyco 82.1 7.7 0.00017 37.5 8.6 119 52-174 9-149 (273)
47 PLN00196 alpha-amylase; Provis 80.7 3.3 7.3E-05 42.7 5.9 63 77-139 42-112 (428)
48 PF11790 Glyco_hydro_cc: Glyco 80.7 1.8 4E-05 40.9 3.8 27 381-408 151-177 (239)
49 PF07488 Glyco_hydro_67M: Glyc 80.6 13 0.00028 36.4 9.4 87 78-177 56-150 (328)
50 PF12891 Glyco_hydro_44: Glyco 79.9 3.7 8E-05 38.8 5.4 113 119-259 24-182 (239)
51 PF00128 Alpha-amylase: Alpha 79.3 3.9 8.5E-05 39.0 5.7 57 82-140 7-73 (316)
52 PF03198 Glyco_hydro_72: Gluca 78.9 13 0.00028 36.6 9.0 90 80-188 54-145 (314)
53 KOG2233 Alpha-N-acetylglucosam 78.4 13 0.00028 38.6 9.0 111 78-188 77-248 (666)
54 COG1523 PulA Type II secretory 73.0 8 0.00017 42.3 6.4 55 85-139 206-285 (697)
55 PF02638 DUF187: Glycosyl hydr 72.0 19 0.0004 35.6 8.3 98 79-176 19-154 (311)
56 PRK05402 glycogen branching en 71.7 29 0.00063 38.4 10.6 91 80-176 266-397 (726)
57 cd06543 GH18_PF-ChiA-like PF-C 71.6 21 0.00045 34.9 8.5 88 86-180 19-109 (294)
58 PLN02784 alpha-amylase 71.1 10 0.00022 42.4 6.6 64 76-139 518-588 (894)
59 TIGR02402 trehalose_TreZ malto 70.0 31 0.00067 36.8 10.0 92 78-176 110-237 (542)
60 cd07945 DRE_TIM_CMS Leptospira 69.6 14 0.00031 35.8 6.8 85 80-176 75-160 (280)
61 PF14871 GHL6: Hypothetical gl 69.3 18 0.00039 30.9 6.6 54 83-140 4-65 (132)
62 PF12876 Cellulase-like: Sugar 69.1 2.9 6.4E-05 32.9 1.6 19 171-189 1-22 (88)
63 PRK09441 cytoplasmic alpha-amy 67.7 11 0.00024 39.5 6.0 64 76-139 19-101 (479)
64 TIGR00612 ispG_gcpE 1-hydroxy- 67.6 47 0.001 33.0 9.8 87 71-171 74-160 (346)
65 PRK03705 glycogen debranching 67.3 13 0.00029 40.5 6.7 54 85-139 185-262 (658)
66 PRK12313 glycogen branching en 66.8 42 0.00091 36.5 10.4 93 78-176 169-302 (633)
67 PRK05799 coproporphyrinogen II 66.5 16 0.00035 36.7 6.8 95 81-192 98-196 (374)
68 cd03174 DRE_TIM_metallolyase D 64.3 22 0.00047 33.5 6.9 82 82-176 77-159 (265)
69 cd07939 DRE_TIM_NifV Streptomy 63.8 23 0.0005 33.7 7.0 58 82-139 72-130 (259)
70 TIGR01210 conserved hypothetic 63.5 21 0.00046 35.1 6.8 108 82-203 117-229 (313)
71 TIGR02090 LEU1_arch isopropylm 63.1 24 0.00051 35.6 7.1 61 80-140 72-133 (363)
72 PRK14705 glycogen branching en 62.8 40 0.00088 39.4 9.6 91 85-176 772-897 (1224)
73 PLN02746 hydroxymethylglutaryl 62.5 25 0.00054 35.3 7.0 85 80-173 122-208 (347)
74 PRK14041 oxaloacetate decarbox 62.0 32 0.00069 36.0 8.0 56 77-145 88-148 (467)
75 cd06593 GH31_xylosidase_YicI Y 61.6 59 0.0013 31.7 9.5 107 81-189 26-161 (308)
76 TIGR02403 trehalose_treC alpha 61.5 15 0.00033 39.1 5.7 62 77-139 25-95 (543)
77 PRK09505 malS alpha-amylase; R 61.1 22 0.00048 39.0 6.9 59 81-139 232-312 (683)
78 COG0821 gcpE 1-hydroxy-2-methy 60.3 84 0.0018 31.3 9.9 85 73-171 78-162 (361)
79 TIGR01515 branching_enzym alph 60.1 76 0.0016 34.4 10.8 96 81-176 158-288 (613)
80 cd07948 DRE_TIM_HCS Saccharomy 59.9 16 0.00035 35.0 5.1 60 81-140 73-133 (262)
81 PRK14040 oxaloacetate decarbox 59.3 35 0.00075 36.9 7.9 51 77-140 90-145 (593)
82 cd02932 OYE_YqiM_FMN Old yello 58.6 1.9E+02 0.0042 28.5 15.1 40 103-142 61-100 (336)
83 cd06592 GH31_glucosidase_KIAA1 58.6 62 0.0013 31.6 9.1 106 81-189 32-167 (303)
84 PRK10785 maltodextrin glucosid 58.4 23 0.00051 38.2 6.5 53 81-139 181-246 (598)
85 cd07944 DRE_TIM_HOA_like 4-hyd 58.2 42 0.00091 32.2 7.6 67 82-176 85-151 (266)
86 PRK10933 trehalose-6-phosphate 56.6 33 0.00072 36.6 7.3 62 76-139 30-101 (551)
87 PRK14510 putative bifunctional 56.0 19 0.00041 42.2 5.7 57 83-139 191-267 (1221)
88 PRK12858 tagatose 1,6-diphosph 55.4 51 0.0011 33.0 7.9 52 85-139 112-163 (340)
89 PRK14706 glycogen branching en 54.8 56 0.0012 35.6 8.7 91 86-176 175-299 (639)
90 TIGR00433 bioB biotin syntheta 54.6 38 0.00082 32.7 6.8 56 81-139 122-178 (296)
91 PRK05692 hydroxymethylglutaryl 54.2 44 0.00095 32.5 7.1 87 80-176 80-168 (287)
92 cd06565 GH20_GcnA-like Glycosy 53.9 61 0.0013 31.7 8.1 62 81-149 19-87 (301)
93 TIGR03581 EF_0839 conserved hy 53.7 53 0.0011 30.7 7.0 77 76-164 132-230 (236)
94 PRK09936 hypothetical protein; 53.3 1.1E+02 0.0025 29.8 9.5 62 81-150 40-101 (296)
95 cd06602 GH31_MGAM_SI_GAA This 53.0 70 0.0015 31.8 8.5 68 122-190 69-168 (339)
96 PRK12581 oxaloacetate decarbox 53.0 34 0.00074 35.7 6.4 57 77-146 98-159 (468)
97 PRK11858 aksA trans-homoaconit 52.7 46 0.00099 33.7 7.2 58 82-139 78-136 (378)
98 cd07938 DRE_TIM_HMGL 3-hydroxy 52.5 48 0.001 32.0 7.1 86 81-176 75-162 (274)
99 cd06601 GH31_lyase_GLase GLase 51.5 62 0.0013 32.2 7.8 71 122-194 67-140 (332)
100 TIGR02660 nifV_homocitr homoci 51.0 46 0.001 33.5 6.9 81 81-176 74-155 (365)
101 cd07937 DRE_TIM_PC_TC_5S Pyruv 50.5 1.1E+02 0.0023 29.5 9.1 68 81-173 93-160 (275)
102 PRK09058 coproporphyrinogen II 49.9 69 0.0015 33.2 8.2 106 81-202 162-270 (449)
103 PRK12331 oxaloacetate decarbox 49.7 71 0.0015 33.3 8.1 51 82-145 99-149 (448)
104 PRK00366 ispG 4-hydroxy-3-meth 49.4 1.1E+02 0.0025 30.6 9.1 72 89-171 98-169 (360)
105 TIGR02401 trehalose_TreY malto 49.2 42 0.00092 37.5 6.7 61 79-139 16-85 (825)
106 TIGR02456 treS_nterm trehalose 48.7 50 0.0011 35.1 7.1 61 79-139 28-96 (539)
107 PF03659 Glyco_hydro_71: Glyco 48.3 76 0.0016 32.3 8.0 50 80-139 18-67 (386)
108 PRK12399 tagatose 1,6-diphosph 47.4 93 0.002 30.8 8.0 57 85-144 111-167 (324)
109 PLN02447 1,4-alpha-glucan-bran 47.1 59 0.0013 36.1 7.4 87 84-176 256-383 (758)
110 TIGR03234 OH-pyruv-isom hydrox 46.9 60 0.0013 30.4 6.7 65 78-145 83-150 (254)
111 cd06600 GH31_MGAM-like This fa 46.3 1.5E+02 0.0032 29.2 9.5 70 121-191 66-164 (317)
112 PRK04161 tagatose 1,6-diphosph 46.3 1E+02 0.0022 30.6 8.1 90 84-182 112-204 (329)
113 cd06598 GH31_transferase_CtsZ 45.4 1.7E+02 0.0037 28.7 9.8 107 83-191 28-168 (317)
114 cd06591 GH31_xylosidase_XylS X 45.3 1.6E+02 0.0035 28.9 9.7 78 114-192 61-164 (319)
115 PRK12568 glycogen branching en 45.2 43 0.00093 37.0 5.9 98 78-176 268-401 (730)
116 TIGR01211 ELP3 histone acetylt 45.2 82 0.0018 33.5 7.9 106 82-204 206-317 (522)
117 cd06603 GH31_GANC_GANAB_alpha 45.1 1.2E+02 0.0025 30.2 8.7 71 122-192 67-167 (339)
118 cd04733 OYE_like_2_FMN Old yel 44.9 3.2E+02 0.0069 27.0 13.1 41 102-142 62-105 (338)
119 PRK05628 coproporphyrinogen II 44.8 77 0.0017 31.9 7.4 104 81-201 107-214 (375)
120 TIGR03217 4OH_2_O_val_ald 4-hy 44.4 1.2E+02 0.0026 30.2 8.6 55 81-148 89-145 (333)
121 TIGR00539 hemN_rel putative ox 44.4 65 0.0014 32.2 6.8 92 81-189 99-194 (360)
122 cd02874 GH18_CFLE_spore_hydrol 44.2 94 0.002 30.3 7.8 92 77-176 7-103 (313)
123 PF02065 Melibiase: Melibiase; 44.2 1.8E+02 0.0039 29.7 10.0 95 81-180 60-188 (394)
124 COG1501 Alpha-glucosidases, fa 43.8 1E+02 0.0022 34.5 8.6 101 91-194 294-422 (772)
125 cd07940 DRE_TIM_IPMS 2-isoprop 43.7 69 0.0015 30.6 6.6 80 82-176 72-156 (268)
126 KOG1065 Maltase glucoamylase a 43.7 1.1E+02 0.0024 34.0 8.7 103 85-193 317-454 (805)
127 COG3589 Uncharacterized conser 43.3 54 0.0012 32.6 5.7 71 83-167 20-90 (360)
128 cd07943 DRE_TIM_HOA 4-hydroxy- 42.8 1.7E+02 0.0036 27.9 9.1 46 82-140 88-133 (263)
129 TIGR01108 oadA oxaloacetate de 42.8 1E+02 0.0022 33.3 8.2 92 82-190 94-205 (582)
130 TIGR02100 glgX_debranch glycog 42.6 67 0.0014 35.4 7.0 55 85-139 190-265 (688)
131 TIGR02104 pulA_typeI pullulana 42.5 59 0.0013 35.2 6.5 56 84-139 169-249 (605)
132 PRK14511 maltooligosyl trehalo 42.2 63 0.0014 36.5 6.7 55 79-139 20-89 (879)
133 cd06545 GH18_3CO4_chitinase Th 42.0 66 0.0014 30.3 6.2 72 100-176 28-99 (253)
134 PF05089 NAGLU: Alpha-N-acetyl 41.9 47 0.001 33.0 5.1 109 78-188 18-184 (333)
135 COG0366 AmyA Glycosidases [Car 41.8 40 0.00086 34.8 5.0 57 83-139 33-97 (505)
136 PRK08446 coproporphyrinogen II 41.5 88 0.0019 31.2 7.2 93 82-190 98-193 (350)
137 PRK06294 coproporphyrinogen II 41.3 1.6E+02 0.0034 29.7 9.1 94 81-191 102-199 (370)
138 cd02803 OYE_like_FMN_family Ol 41.1 2.1E+02 0.0045 27.9 9.8 39 104-142 62-100 (327)
139 PRK07379 coproporphyrinogen II 40.9 1.5E+02 0.0032 30.2 8.9 105 81-201 114-221 (400)
140 COG2100 Predicted Fe-S oxidore 40.8 99 0.0022 30.8 7.0 82 75-172 197-284 (414)
141 cd06599 GH31_glycosidase_Aec37 40.1 2.6E+02 0.0056 27.5 10.2 69 121-190 75-171 (317)
142 PRK14507 putative bifunctional 39.1 76 0.0016 38.5 7.1 60 78-143 757-833 (1693)
143 PLN02960 alpha-amylase 38.8 95 0.0021 35.1 7.4 94 77-176 414-549 (897)
144 PF03511 Fanconi_A: Fanconi an 38.0 23 0.0005 26.1 1.7 38 103-142 19-56 (64)
145 cd06542 GH18_EndoS-like Endo-b 37.9 1E+02 0.0022 29.0 6.7 55 118-176 50-104 (255)
146 cd07947 DRE_TIM_Re_CS Clostrid 37.4 86 0.0019 30.4 6.2 61 79-139 74-135 (279)
147 cd06525 GH25_Lyc-like Lyc mura 36.5 2.7E+02 0.0058 24.8 9.0 20 160-179 101-120 (184)
148 PF02055 Glyco_hydro_30: O-Gly 36.5 56 0.0012 34.5 5.0 100 90-191 111-236 (496)
149 cd02742 GH20_hexosaminidase Be 36.4 1.1E+02 0.0024 29.9 6.9 62 81-148 18-98 (303)
150 TIGR01212 radical SAM protein, 36.4 1E+02 0.0023 30.0 6.7 73 118-203 162-234 (302)
151 TIGR03471 HpnJ hopanoid biosyn 36.1 1.1E+02 0.0025 31.7 7.3 59 82-145 287-348 (472)
152 TIGR01232 lacD tagatose 1,6-di 36.1 1.4E+02 0.003 29.6 7.3 59 84-145 111-169 (325)
153 cd07941 DRE_TIM_LeuA3 Desulfob 35.9 63 0.0014 31.0 5.0 81 82-173 81-162 (273)
154 cd06568 GH20_SpHex_like A subg 35.3 1.4E+02 0.0031 29.6 7.5 72 72-149 9-102 (329)
155 PRK13398 3-deoxy-7-phosphohept 34.8 1.2E+02 0.0026 29.1 6.7 71 74-148 36-107 (266)
156 PRK12677 xylose isomerase; Pro 34.8 3.7E+02 0.0079 27.3 10.5 71 81-158 33-104 (384)
157 smart00729 Elp3 Elongator prot 34.6 2.6E+02 0.0056 24.4 8.6 58 79-139 97-157 (216)
158 PF04914 DltD_C: DltD C-termin 34.6 1.3E+02 0.0027 25.8 6.0 57 119-179 36-92 (130)
159 COG5520 O-Glycosyl hydrolase [ 34.4 1.5E+02 0.0032 30.0 7.1 94 90-191 77-181 (433)
160 PRK08599 coproporphyrinogen II 33.7 2.2E+02 0.0047 28.6 8.7 95 81-192 99-197 (377)
161 PLN02389 biotin synthase 33.6 1.3E+02 0.0029 30.5 7.1 58 79-139 175-233 (379)
162 COG3534 AbfA Alpha-L-arabinofu 33.5 2.4E+02 0.0051 29.4 8.6 94 81-189 50-175 (501)
163 PRK09856 fructoselysine 3-epim 33.2 55 0.0012 31.0 4.1 61 77-138 88-148 (275)
164 PF04551 GcpE: GcpE protein; 31.9 1.3E+02 0.0029 30.1 6.5 85 72-170 77-168 (359)
165 PRK08195 4-hyroxy-2-oxovalerat 31.7 71 0.0015 31.9 4.7 68 82-177 91-158 (337)
166 PLN02923 xylose isomerase 31.7 2.9E+02 0.0064 28.6 8.9 74 117-201 121-197 (478)
167 PRK09249 coproporphyrinogen II 31.3 1.2E+02 0.0026 31.5 6.4 86 81-182 150-238 (453)
168 cd00019 AP2Ec AP endonuclease 31.2 2.7E+02 0.0058 26.4 8.5 55 79-138 10-65 (279)
169 PRK08208 coproporphyrinogen II 31.1 1.9E+02 0.004 29.8 7.8 92 81-189 140-235 (430)
170 COG3623 SgaU Putative L-xylulo 30.5 3.3E+02 0.0072 25.9 8.4 88 80-175 19-147 (287)
171 PTZ00445 p36-lilke protein; Pr 30.5 1.1E+02 0.0023 28.6 5.2 56 85-140 35-99 (219)
172 TIGR00542 hxl6Piso_put hexulos 30.4 93 0.002 29.6 5.2 60 78-139 93-153 (279)
173 TIGR00538 hemN oxygen-independ 30.3 47 0.001 34.5 3.3 75 81-173 150-229 (455)
174 PRK09282 pyruvate carboxylase 29.6 2E+02 0.0043 31.1 7.9 93 81-190 98-210 (592)
175 PF04028 DUF374: Domain of unk 28.7 1.9E+02 0.0042 22.0 5.6 40 86-139 27-66 (74)
176 PRK05904 coproporphyrinogen II 28.3 1.7E+02 0.0037 29.3 6.8 91 82-190 103-198 (353)
177 PF01261 AP_endonuc_2: Xylose 28.2 61 0.0013 28.7 3.3 62 78-139 70-132 (213)
178 cd06562 GH20_HexA_HexB-like Be 28.1 1.2E+02 0.0026 30.3 5.6 71 72-148 9-96 (348)
179 PF00682 HMGL-like: HMGL-like 27.7 2.1E+02 0.0046 26.4 7.0 79 82-174 66-149 (237)
180 TIGR02102 pullulan_Gpos pullul 27.4 1.6E+02 0.0034 34.4 6.9 62 78-139 479-575 (1111)
181 cd06595 GH31_xylosidase_XylS-l 27.1 2.2E+02 0.0048 27.5 7.2 78 113-191 68-163 (292)
182 PRK07106 5-aminoimidazole-4-ca 27.0 89 0.0019 31.7 4.4 50 73-138 334-383 (390)
183 TIGR02631 xylA_Arthro xylose i 27.0 6.8E+02 0.015 25.4 11.6 93 79-178 32-130 (382)
184 PRK13347 coproporphyrinogen II 26.7 1.3E+02 0.0028 31.2 5.8 84 81-182 151-239 (453)
185 cd08576 GDPD_like_SMaseD_PLD G 26.5 5.9E+02 0.013 24.6 10.4 104 81-190 9-126 (265)
186 PRK00042 tpiA triosephosphate 26.2 1.7E+02 0.0036 27.9 6.0 54 69-139 73-126 (250)
187 cd03130 GATase1_CobB Type 1 gl 26.0 2.8E+02 0.006 25.1 7.2 67 72-141 6-83 (198)
188 COG0138 PurH AICAR transformyl 26.0 1E+02 0.0022 32.3 4.6 54 73-142 459-513 (515)
189 PRK13209 L-xylulose 5-phosphat 25.7 5.7E+02 0.012 24.1 9.8 83 81-174 23-107 (283)
190 smart00812 Alpha_L_fucos Alpha 25.6 2.5E+02 0.0055 28.5 7.5 54 85-138 87-147 (384)
191 PRK09997 hydroxypyruvate isome 25.5 2.1E+02 0.0046 26.8 6.6 62 81-145 87-151 (258)
192 PRK01060 endonuclease IV; Prov 24.9 3E+02 0.0064 26.0 7.6 50 81-135 14-63 (281)
193 PRK13210 putative L-xylulose 5 24.3 1.3E+02 0.0028 28.5 4.9 59 79-139 94-153 (284)
194 cd02871 GH18_chitinase_D-like 23.9 2.2E+02 0.0047 27.9 6.6 50 120-176 61-110 (312)
195 cd06570 GH20_chitobiase-like_1 23.8 2.9E+02 0.0062 27.2 7.3 61 81-147 20-93 (311)
196 PRK07094 biotin synthase; Prov 23.8 1.2E+02 0.0027 29.6 4.8 57 80-139 127-185 (323)
197 PF07555 NAGidase: beta-N-acet 23.8 2.7E+02 0.0059 27.4 7.1 92 83-185 19-111 (306)
198 PF13812 PPR_3: Pentatricopept 23.4 51 0.0011 19.9 1.3 14 122-135 21-34 (34)
199 PF06777 DUF1227: Protein of u 23.3 1.6E+02 0.0034 25.8 4.7 68 119-187 16-85 (146)
200 TIGR00419 tim triosephosphate 23.0 2.4E+02 0.0052 26.0 6.2 50 69-139 68-117 (205)
201 TIGR02159 PA_CoA_Oxy4 phenylac 22.9 91 0.002 27.2 3.2 54 73-135 36-90 (146)
202 COG3280 TreY Maltooligosyl tre 22.8 1.7E+02 0.0037 32.4 5.7 58 82-139 22-88 (889)
203 PRK08255 salicylyl-CoA 5-hydro 22.7 1.1E+03 0.024 26.3 15.9 55 88-142 440-499 (765)
204 KOG0470 1,4-alpha-glucan branc 22.5 1.8E+02 0.0038 32.1 5.8 64 78-141 253-333 (757)
205 PRK05474 xylose isomerase; Pro 22.1 9E+02 0.019 25.1 13.8 69 84-159 84-157 (437)
206 cd06589 GH31 The enzymes of gl 22.1 3.5E+02 0.0077 25.6 7.5 90 82-191 27-120 (265)
207 PRK14565 triosephosphate isome 21.9 2.4E+02 0.0052 26.7 6.0 48 86-140 79-126 (237)
208 PLN02925 4-hydroxy-3-methylbut 21.7 2.7E+02 0.0059 30.6 7.0 51 120-171 211-261 (733)
209 TIGR00587 nfo apurinic endonuc 21.6 2.3E+02 0.005 27.0 6.1 56 81-141 13-68 (274)
210 PF01055 Glyco_hydro_31: Glyco 21.5 2.8E+02 0.0062 28.3 7.2 108 81-191 45-184 (441)
211 PRK09389 (R)-citramalate synth 21.5 1.5E+02 0.0033 31.1 5.2 61 81-141 75-136 (488)
212 PRK06256 biotin synthase; Vali 21.4 1.5E+02 0.0033 29.2 4.9 57 80-139 150-207 (336)
213 PRK08207 coproporphyrinogen II 21.2 1E+02 0.0022 32.4 3.8 91 82-189 269-363 (488)
214 cd02877 GH18_hevamine_XipI_cla 21.2 1.6E+02 0.0035 28.5 4.9 48 120-177 60-107 (280)
215 COG0635 HemN Coproporphyrinoge 21.2 6.9E+02 0.015 25.7 9.8 102 82-200 137-242 (416)
216 PF01624 MutS_I: MutS domain I 21.1 83 0.0018 25.8 2.5 59 76-139 25-84 (113)
217 TIGR02630 xylose_isom_A xylose 21.0 9.4E+02 0.02 24.9 14.0 68 85-159 84-156 (434)
218 PRK12330 oxaloacetate decarbox 21.0 3.7E+02 0.008 28.5 7.8 93 82-190 100-213 (499)
219 TIGR00674 dapA dihydrodipicoli 20.9 4.2E+02 0.009 25.4 7.8 60 110-183 13-72 (285)
220 PF04055 Radical_SAM: Radical 20.9 1.1E+02 0.0024 25.5 3.4 52 82-135 90-143 (166)
221 PRK00230 orotidine 5'-phosphat 20.7 1.3E+02 0.0028 28.2 4.0 61 73-146 7-67 (230)
222 cd01335 Radical_SAM Radical SA 20.6 1.3E+02 0.0028 25.8 3.9 58 81-139 87-145 (204)
223 PF09713 A_thal_3526: Plant pr 20.5 87 0.0019 22.5 2.1 36 122-168 16-52 (54)
224 PF10566 Glyco_hydro_97: Glyco 20.2 2.5E+02 0.0055 27.2 5.9 58 82-150 109-166 (273)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-115 Score=872.43 Aligned_cols=387 Identities=58% Similarity=1.051 Sum_probs=354.9
Q ss_pred CCCCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccC-CCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEc
Q 015181 21 ISRADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQ-PGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFS 99 (411)
Q Consensus 21 ~~~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~s 99 (411)
+.+..||++|+||+||||||+|||+++|||++|+||.|+|. |+++.+.+++|+|||+||||+|||+|||+||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 45789999999999999999999999999999999999984 55777788899999999999999999999999999999
Q ss_pred ccCCccccCCC--CCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 015181 100 ISWPRIFPNGT--GEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGD 177 (411)
Q Consensus 100 i~W~ri~p~g~--g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 177 (411)
|+||||+|.|+ +.+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++|||
T Consensus 112 IsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fGD 191 (524)
T KOG0626|consen 112 ISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFGD 191 (524)
T ss_pred eehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999996 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEe
Q 015181 178 RVKYWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIAL 257 (411)
Q Consensus 178 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~ 257 (411)
|||+|+|||||++++..||..|..|||+|+... .+|+.+++.+++|.|+|||++|||+||++||+.++..|+|+||+++
T Consensus 192 rVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~-~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 192 RVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYV-GNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred cceeeEEecccceeeeehhccCCCCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 999999999999999999999999999998766 7899999999999999999999999999999999888999999999
Q ss_pred cCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCCCHhhhhhhcCCCceeeeccCCcceeec
Q 015181 258 DAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEITPEMSKALVGSLDFVGLNHYTTLYARN 337 (411)
Q Consensus 258 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFlGiNyYt~~~v~~ 337 (411)
+..|+.|.+++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|.++|||+.||+|||||++.+|++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCC
Q 015181 338 DRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVVS 410 (411)
Q Consensus 338 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~~ 410 (411)
.+.++.. ..+++..|..+.. ......+.++.+...|..++|+|||++|++++++|+||||||||||+++.+
T Consensus 351 ~~~~~~~-~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~ 421 (524)
T KOG0626|consen 351 LKPPPDP-SQPGWSTDSGVDW-TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLD 421 (524)
T ss_pred cCCCCCC-CCcccccccceee-eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCccc
Confidence 6542211 0223444544433 111113456667788988999999999999999999999999999999864
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=1.3e-106 Score=833.16 Aligned_cols=390 Identities=45% Similarity=0.893 Sum_probs=335.0
Q ss_pred HHHHHHHHhhhcc--CCCCCCCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccH
Q 015181 5 LISILLITNLVAN--SESISRADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFK 82 (411)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~~~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~ 82 (411)
|+.+.||.-..|+ +..+.+.+||++|+||+|||||||||++++||||+|+||.+++.+ ++.++++||||||||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~ 82 (503)
T PLN02849 7 LFTIFLLLALSSGKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYK 82 (503)
T ss_pred HHHHHHHHhcccccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHH
Confidence 3333334334443 344777889999999999999999999999999999999998754 2457899999999999
Q ss_pred HHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHH
Q 015181 83 SDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIE 162 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~ 162 (411)
|||+|||+||+++|||||+|+||+|+|.|.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|+++++
T Consensus 83 eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~ 162 (503)
T PLN02849 83 EDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIK 162 (503)
T ss_pred HHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHhCCcceEEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 015181 163 DFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYR 242 (411)
Q Consensus 163 ~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r 242 (411)
+|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+... ...|+.+++.++.++++||+++|||+||+++|
T Consensus 163 ~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~-~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~ 241 (503)
T PLN02849 163 DFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSP-GRNCSSGNSSTEPYIVGHNLLLAHASVSRLYK 241 (503)
T ss_pred HHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCccccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999964310 01244344456789999999999999999999
Q ss_pred HhhccCCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCCCHhhhhhhcCCC
Q 015181 243 INFKEKQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEITPEMSKALVGSL 322 (411)
Q Consensus 243 ~~~~~~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~ 322 (411)
+.++..++++||++++..++||.+++|+|++||++++++.++||+||++.|+||+.|++.+++++|.++++|+++|++++
T Consensus 242 ~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~ 321 (503)
T PLN02849 242 QKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSS 321 (503)
T ss_pred HHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCC
Confidence 87544478999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred ceeeeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEe
Q 015181 323 DFVGLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIIT 402 (411)
Q Consensus 323 DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~IT 402 (411)
||||||||++.+|+........ .+. . .. .... +.+..+.+++|| +|+|+|||++|+++++||+++|||||
T Consensus 322 DFlGiNyYt~~~v~~~~~~~~~---~~~-~--~~--~~~~-~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~IT 391 (503)
T PLN02849 322 DFIGVIHYLAASVTNIKIKPSL---SGN-P--DF--YSDM-GVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYIL 391 (503)
T ss_pred CEEEEeccchhhcccCCCCCCC---CCC-C--cc--cccc-CCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEe
Confidence 9999999999999753211000 000 0 00 0000 112234567899 69999999999999999987789999
Q ss_pred cCCCCCC
Q 015181 403 ENGRSVV 409 (411)
Q Consensus 403 ENG~~~~ 409 (411)
|||++..
T Consensus 392 ENG~~~~ 398 (503)
T PLN02849 392 ENGTPMK 398 (503)
T ss_pred CCCCCcc
Confidence 9999964
No 3
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1e-106 Score=834.16 Aligned_cols=377 Identities=44% Similarity=0.845 Sum_probs=328.6
Q ss_pred CCCCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcc
Q 015181 21 ISRADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSI 100 (411)
Q Consensus 21 ~~~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si 100 (411)
+.+.+||++|+||+|||||||||++++||||+|+||.+++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 67788999999999999999999999999999999999863 23458899999999999999999999999999999
Q ss_pred cCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 015181 101 SWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVK 180 (411)
Q Consensus 101 ~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~ 180 (411)
+||||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999989999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred EEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCC
Q 015181 181 YWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAK 260 (411)
Q Consensus 181 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~ 260 (411)
+|+|||||++++..||..|.. ||+++......|..+++.++.++++||+++|||+||+++|+.++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999885 8765421112354344456789999999999999999999976556889999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCCCHhhhhhhcCCCceeeeccCCcceeecCcc
Q 015181 261 WYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEITPEMSKALVGSLDFVGLNHYTTLYARNDRS 340 (411)
Q Consensus 261 ~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFlGiNyYt~~~v~~~~~ 340 (411)
+++|++++|+|+.||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++||+++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred hhh-hhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCC
Q 015181 341 RIQ-KLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVV 409 (411)
Q Consensus 341 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~ 409 (411)
+.. .....++..+.+.. ..+..+.+++|| +|||+|||++|+++++||+++||||||||++..
T Consensus 338 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~ 400 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMK 400 (504)
T ss_pred CCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 100 00000110010000 012346778999 599999999999999999877999999999854
No 4
>PLN02998 beta-glucosidase
Probab=100.00 E-value=4e-106 Score=828.43 Aligned_cols=382 Identities=48% Similarity=0.896 Sum_probs=330.4
Q ss_pred CCCCCCCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEE
Q 015181 18 SESISRADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYR 97 (411)
Q Consensus 18 ~~~~~~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R 97 (411)
+..+.+.+||++|+||+|||||||||++++||||+|+||.|++ ++ ..+..++++||||||||+|||+|||+||+++||
T Consensus 23 ~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~-~~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YR 100 (497)
T PLN02998 23 SLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AG-HSGVAAGNVACDQYHKYKEDVKLMADMGLEAYR 100 (497)
T ss_pred cccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cC-cCCCCCCcccccHHHhhHHHHHHHHHcCCCeEE
Confidence 3446778899999999999999999999999999999999987 34 222247899999999999999999999999999
Q ss_pred EcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 015181 98 FSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGD 177 (411)
Q Consensus 98 ~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 177 (411)
|||+|+||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||
T Consensus 101 fSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgd 180 (497)
T PLN02998 101 FSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGD 180 (497)
T ss_pred eeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999988999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred cceEEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEe
Q 015181 178 RVKYWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIAL 257 (411)
Q Consensus 178 ~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~ 257 (411)
+|++|+|||||++++..||..|.+|||++.......|+.+++.++.++++||+++|||+||+++|+.++..++++||+++
T Consensus 181 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~ 260 (497)
T PLN02998 181 RVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISV 260 (497)
T ss_pred cCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 99999999999999999999999999964421112355455557789999999999999999999976545789999999
Q ss_pred cCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCCCHhhhhhhcCCCceeeeccCCcceeec
Q 015181 258 DAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEITPEMSKALVGSLDFVGLNHYTTLYARN 337 (411)
Q Consensus 258 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFlGiNyYt~~~v~~ 337 (411)
+..+++|.+++++|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 261 ~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~ 340 (497)
T PLN02998 261 YTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKD 340 (497)
T ss_pred eCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCccccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999976
Q ss_pred CcchhhhhhcccccCCcceeeecccCCccccccC-CCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCC
Q 015181 338 DRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRA-ASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVV 409 (411)
Q Consensus 338 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t-~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~ 409 (411)
.+.+... ....+..+..... .+.+..+ .++| +|+|+|||++|+++++||+++||||||||+++.
T Consensus 341 ~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~ 405 (497)
T PLN02998 341 NSSSLKP-NLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTP 405 (497)
T ss_pred CCCcCCC-Ccccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccC
Confidence 3321000 0011111101100 0112233 3667 699999999999999999877899999999875
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-104 Score=789.54 Aligned_cols=361 Identities=40% Similarity=0.694 Sum_probs=323.6
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCcCceeeeccc--CCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEccc
Q 015181 24 ADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTR--QPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSIS 101 (411)
Q Consensus 24 ~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~ 101 (411)
.+||++|+||+||||+|+|||+++||||+|+||.|.+ .++++..+..+++||||||||+|||+|||+||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 46777777889999999999999999999999999999999
Q ss_pred CCccccCCCC-CCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 015181 102 WPRIFPNGTG-EPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVK 180 (411)
Q Consensus 102 W~ri~p~g~g-~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~ 180 (411)
||||+|+|.+ .+|++|++||+++||+|+++||+|+|||+|||+|+||+++||||.||+++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999855 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCC
Q 015181 181 YWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAK 260 (411)
Q Consensus 181 ~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~ 260 (411)
+|+||||||+++..||..|.+||+..+ .++++||+||+++|||+||+++|+.. ++.+|||+++..
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~------------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~ 226 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD------------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLT 226 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC------------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccC
Confidence 999999999999999999999998754 36889999999999999999999974 333999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhccc--CCCCCHhhhhhhc-CCCceeeeccCC-cceee
Q 015181 261 WYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGR--LPEITPEMSKALV-GSLDFVGLNHYT-TLYAR 336 (411)
Q Consensus 261 ~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik-g~~DFlGiNyYt-~~~v~ 336 (411)
+.||.+++|+|+.||+.++.+.+.+|+||+++|.||..+.+.+++. +|.++++|+++|| +++||||+|||+ +.+++
T Consensus 227 p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~ 306 (460)
T COG2723 227 PAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKA 306 (460)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEee
Confidence 9999999999999999999999999999999999999999999874 7999999999997 679999999999 55555
Q ss_pred cCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCC
Q 015181 337 NDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVVS 410 (411)
Q Consensus 337 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~~ 410 (411)
..+... .++..+ .+ ....+ +|..+.+++|| +|||+|||++|+++++||+ +||||||||+|..+
T Consensus 307 ~~~~~~-----~~~~~~-~~-~~~~~--~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d 369 (460)
T COG2723 307 AEPRYV-----SGYGPG-GF-FTSVP--NPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKD 369 (460)
T ss_pred ccCCcC-----Cccccc-cc-ccccC--CCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCccc
Confidence 433210 011111 00 00111 36677889999 6999999999999999997 99999999998654
No 6
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2e-101 Score=792.67 Aligned_cols=359 Identities=32% Similarity=0.517 Sum_probs=311.2
Q ss_pred CCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCccc--C----------C--CCCCCcCccccccHHHHHHH
Q 015181 23 RADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIM--D----------F--SNADTAVDQYHRFKSDIDLM 88 (411)
Q Consensus 23 ~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~~~~eD~~l~ 88 (411)
..+||++|+||+|||||||||++++||||+|+||.|++.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45699999999999999999999999999999999987555431 1 1 15789999999999999999
Q ss_pred HHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHH
Q 015181 89 KDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHY 167 (411)
Q Consensus 89 ~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~y 167 (411)
|+||+++|||||+||||+|+| .|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 999999999999999999998 5679999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCcceEEEEecCCccccccccc-CCC-CCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhh
Q 015181 168 AFTCFQEFGDRVKYWITFNEPHGFTLQGYD-TGL-QAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINF 245 (411)
Q Consensus 168 a~~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~ 245 (411)
|+.||++|||+|++|+|||||++++..||. .|. +|||.. +.++.++++||+++|||+||+++|+.
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~------------~~~~~~~a~h~~llAHa~A~~~~~~~- 229 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN------------KEQVKYQAAHHELVASAIATKIAHEV- 229 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc------------hhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999999999888886 444 366632 12567999999999999999999985
Q ss_pred ccCCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcc--cCCCCCHhhhhhhc-CCC
Q 015181 246 KEKQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDG--RLPEITPEMSKALV-GSL 322 (411)
Q Consensus 246 ~~~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~--~lp~~t~~d~~~ik-g~~ 322 (411)
.|+++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.+++ .+|.|+++|+++|| +++
T Consensus 230 --~~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~ 306 (478)
T PRK09593 230 --DPENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTV 306 (478)
T ss_pred --CCCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 37899999999999999999999999999987 4578999999999999999999975 46889999999996 999
Q ss_pred ceeeeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEe
Q 015181 323 DFVGLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIIT 402 (411)
Q Consensus 323 DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~IT 402 (411)
||||||||++.+|+..+..... . .. .. ....+ .|..+.+++|| +|+|+||+.+|+++++||+ .|||||
T Consensus 307 DFlGiNyYt~~~v~~~~~~~~~----~--~~-~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~It 374 (478)
T PRK09593 307 DFISFSYYSSRVASGDPKVNEK----T--AG-NI-FASLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQ-KPMFIV 374 (478)
T ss_pred CEEEEecccCcccccCCCCCCC----C--CC-Cc-ccccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcC-CCEEEE
Confidence 9999999999999853311000 0 00 00 00011 14456788999 5999999999999999997 589999
Q ss_pred cCCCCCC
Q 015181 403 ENGRSVV 409 (411)
Q Consensus 403 ENG~~~~ 409 (411)
|||++..
T Consensus 375 ENG~~~~ 381 (478)
T PRK09593 375 ENGLGAV 381 (478)
T ss_pred cCCCCCC
Confidence 9999954
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2.5e-101 Score=792.18 Aligned_cols=365 Identities=32% Similarity=0.512 Sum_probs=312.6
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccCC
Q 015181 24 ADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWP 103 (411)
Q Consensus 24 ~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ 103 (411)
.+||++|+||+|||||||||++++||||+|+||.+++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 459999999999999999999999999999999998765543 6889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEE
Q 015181 104 RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWI 183 (411)
Q Consensus 104 ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 183 (411)
||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999976 9999999999999999999999999 99999
Q ss_pred EecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCCccc
Q 015181 184 TFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAKWYE 263 (411)
Q Consensus 184 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~~~~ 263 (411)
|||||++++..||..|.+|||++.. .++.++++||+++|||+||+++|+. .++++||++++..+++
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~---~~~g~IGi~~~~~~~~ 222 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVAHARAVKLFKDK---GYKGEIGVVHALPTKY 222 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceEe
Confidence 9999999999999999999996421 1467999999999999999999986 3779999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcc------cCCCCCHhhhhhhc---CCCceeeeccCCcc
Q 015181 264 PKS-DSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDG------RLPEITPEMSKALV---GSLDFVGLNHYTTL 333 (411)
Q Consensus 264 P~~-~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~------~lp~~t~~d~~~ik---g~~DFlGiNyYt~~ 333 (411)
|.+ ++++|++||++++++.++||+||+++|+||+.|++.++. ..|.|+++|+++|| +++||||||||+|.
T Consensus 223 P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~ 302 (469)
T PRK13511 223 PIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSD 302 (469)
T ss_pred eCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcc
Confidence 999 899999999999999999999999999999999987742 23489999999996 46899999999999
Q ss_pred eeecCcchh-hhhhcccccCCcceeee--cccCCccccccCCCCCcccChHHHHHHHHHHHHHCCC-CCEEEecCCCCCC
Q 015181 334 YARNDRSRI-QKLILQDAYSDAAVITT--SFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKN-PPMIITENGRSVV 409 (411)
Q Consensus 334 ~v~~~~~~~-~~~~~~~~~~d~~~~~~--~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~-~PI~ITENG~~~~ 409 (411)
+|+..+... ...+..+.......... ......+..+.+++|| +|+|+||+++|++++++|++ +||||||||++..
T Consensus 303 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~ 381 (469)
T PRK13511 303 WMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYK 381 (469)
T ss_pred eeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCC
Confidence 998632110 00000000000000000 0000012335678999 59999999999999999986 6899999999844
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=6e-101 Score=787.70 Aligned_cols=361 Identities=32% Similarity=0.511 Sum_probs=312.0
Q ss_pred CCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccCC
Q 015181 24 ADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWP 103 (411)
Q Consensus 24 ~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ 103 (411)
.+||++|+||+|||||||||+++++|||+|+||.+.+.+++ .++++||||||||+|||+|||+||+++|||||+||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWs 77 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWS 77 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchh
Confidence 45999999999999999999999999999999998865443 36789999999999999999999999999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEE
Q 015181 104 RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWI 183 (411)
Q Consensus 104 ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 183 (411)
||+|+|.|.+|++|++||+++|++|+++||+|||||+|||+|+||+++ |||+|++++++|++||+.||++||+ |++|+
T Consensus 78 RI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 78 RIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred hccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998889999999999999999999999999999999999999976 9999999999999999999999998 99999
Q ss_pred EecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCCccc
Q 015181 184 TFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAKWYE 263 (411)
Q Consensus 184 t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~~~~ 263 (411)
|||||++++..||..|.+|||.... .++.++++||+++|||+||+++|+. .++++||++++..++|
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~a~hn~l~AHa~A~~~~~~~---~~~~~IGi~~~~~~~~ 221 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVSHARAVKLYKDK---GYKGEIGVVHALPTKY 221 (467)
T ss_pred EecchhhhhhccchhcccCCCccch-----------hHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEEecCceeE
Confidence 9999999999999999999995321 1467999999999999999999986 3779999999999999
Q ss_pred cCC-CCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcc----c--CCCCCHhhhhhh---cCCCceeeeccCCcc
Q 015181 264 PKS-DSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDG----R--LPEITPEMSKAL---VGSLDFVGLNHYTTL 333 (411)
Q Consensus 264 P~~-~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~----~--lp~~t~~d~~~i---kg~~DFlGiNyYt~~ 333 (411)
|++ ++|+|++||++++++.++||+||+++|+||+.|++.++. . +|.++++|+++| ++++||||||||++.
T Consensus 222 P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~ 301 (467)
T TIGR01233 222 PYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSD 301 (467)
T ss_pred ECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccce
Confidence 998 899999999999999899999999999999999998753 2 378999999999 589999999999999
Q ss_pred eeecCcchhhh-hhcc---c--ccCCcceeeecccCCcc-ccccCCCCCcccChHHHHHHHHHHHHHCCC-CCEEEecCC
Q 015181 334 YARNDRSRIQK-LILQ---D--AYSDAAVITTSFRSGIA-IGKRAASRWLHIVPWGIRKLARYVKHKYKN-PPMIITENG 405 (411)
Q Consensus 334 ~v~~~~~~~~~-~~~~---~--~~~d~~~~~~~~~~~~~-~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~-~PI~ITENG 405 (411)
+|+..+..... .+.. . ........ ....+ ..+.+++|| +|+|+|||.+|+++++||++ +||||||||
T Consensus 302 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG 376 (467)
T TIGR01233 302 WMQAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENG 376 (467)
T ss_pred eeccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCC
Confidence 99753210000 0000 0 00000000 00012 225678999 59999999999999999985 579999999
Q ss_pred CCCC
Q 015181 406 RSVV 409 (411)
Q Consensus 406 ~~~~ 409 (411)
++..
T Consensus 377 ~~~~ 380 (467)
T TIGR01233 377 LGYK 380 (467)
T ss_pred CCCC
Confidence 9954
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.6e-102 Score=801.39 Aligned_cols=364 Identities=51% Similarity=0.882 Sum_probs=317.0
Q ss_pred CCCCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccC
Q 015181 23 RADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISW 102 (411)
Q Consensus 23 ~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W 102 (411)
+.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 2 SKKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 45799999999999999999999999999999999999888888888899999999999999999999999999999999
Q ss_pred CccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceE
Q 015181 103 PRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKY 181 (411)
Q Consensus 103 ~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~ 181 (411)
+||+|+| .|.+|++|+++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++
T Consensus 82 ~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 82 SRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred hheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 9999999 89999999999999999999999999999999999999997 799999999999999999999999999999
Q ss_pred EEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCCc
Q 015181 182 WITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAKW 261 (411)
Q Consensus 182 w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~~ 261 (411)
|+|||||++++..||..|.+|||..+ .++.++++||+++|||+||+++|+++ ++++||++++..+
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~~------------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~ 225 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRDS------------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSP 225 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSST------------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEE
T ss_pred EEeccccceeeccccccccccccccc------------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccc
Confidence 99999999999999999999999544 36889999999999999999999975 7899999999999
Q ss_pred cccCCCCHHHH-HHHHHHHHhhcccccccccCCCCChhHHHhhccc--CCCCCHhhhhhhcCCCceeeeccCCcceeecC
Q 015181 262 YEPKSDSDEDK-DAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGR--LPEITPEMSKALVGSLDFVGLNHYTTLYARND 338 (411)
Q Consensus 262 ~~P~~~~~~D~-~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFlGiNyYt~~~v~~~ 338 (411)
++|.+++++|. +||++.+++.++||+||+++|+||..|+..++++ +|.||++|+++||+++||||||||++.+|+..
T Consensus 226 ~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~ 305 (455)
T PF00232_consen 226 FYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRAD 305 (455)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEES
T ss_pred cCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccC
Confidence 99999988776 8899999999999999999999999999999987 99999999999999999999999999999987
Q ss_pred cchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCC
Q 015181 339 RSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVVS 410 (411)
Q Consensus 339 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~~ 410 (411)
+.+... ...... ....... ++.++.++++| +++|+|||++|++++++|+++||||||||+++.+
T Consensus 306 ~~~~~~---~~~~~~--~~~~~~~--~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~ 369 (455)
T PF00232_consen 306 PNPSSP---PSYDSD--APFGQPY--NPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPD 369 (455)
T ss_dssp SSSTSS---TTHEEE--ESEEEEC--ETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EET
T ss_pred cccccc---ccccCC--ccccccc--cccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccc
Confidence 532111 000000 0010000 24567899999 5999999999999999998899999999998764
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-100 Score=786.14 Aligned_cols=357 Identities=33% Similarity=0.561 Sum_probs=305.8
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCcCceeeecc---c-CCCccc----CCC--CCCCcCccccccHHHHHHHHHcCCC
Q 015181 25 DFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFT---R-QPGRIM----DFS--NADTAVDQYHRFKSDIDLMKDLGMD 94 (411)
Q Consensus 25 ~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~~~~eD~~l~~~lG~~ 94 (411)
+||++|+||+|||||||||++++||||+|+||.|+ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 3 244442 222 5789999999999999999999999
Q ss_pred EEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHH
Q 015181 95 AYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQ 173 (411)
Q Consensus 95 ~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 173 (411)
+|||||+||||+|+| .|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 999999999999998 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceEEEEecCCcccccc-----ccc-CCC-CCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhc
Q 015181 174 EFGDRVKYWITFNEPHGFTLQ-----GYD-TGL-QAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFK 246 (411)
Q Consensus 174 ~~gd~v~~w~t~NEp~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~ 246 (411)
+|||+|++|+|||||++++.. ||. .|. +|||.. ..+..++++||+++|||+||+++|+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~------------~~~~~~~~~h~~llAha~A~~~~~~~~- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED------------REQIMYQAAHYELVASALAVKTGHEIN- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999998766 444 343 355531 124579999999999999999999864
Q ss_pred cCCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhccc--CCCCCHhhhhhh-cCCCc
Q 015181 247 EKQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGR--LPEITPEMSKAL-VGSLD 323 (411)
Q Consensus 247 ~~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~i-kg~~D 323 (411)
++++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.|+++|+++| ++++|
T Consensus 230 --~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~D 306 (476)
T PRK09589 230 --PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVD 306 (476)
T ss_pred --CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 678999999999999999999999999998854 679999999999999999999863 489999999999 69999
Q ss_pred eeeeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEec
Q 015181 324 FVGLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITE 403 (411)
Q Consensus 324 FlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITE 403 (411)
|||||||+|.+|+..+..+. .....+ ... .. .|..+.+++|| +|+|+|||.+|+++++||+ .||||||
T Consensus 307 FlGiNyYts~~v~~~~~~~~----~~~~~~--~~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~-~Pi~ItE 374 (476)
T PRK09589 307 YIGFSYYMSFATKFHEDNPQ----LDYVET--RDL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQ-LPLFIVE 374 (476)
T ss_pred EEEEecccCcccccCCCCCC----CCcccc--ccc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCEEEEe
Confidence 99999999999975321100 000000 000 11 14456778999 6999999999999999997 6899999
Q ss_pred CCCCCC
Q 015181 404 NGRSVV 409 (411)
Q Consensus 404 NG~~~~ 409 (411)
||++..
T Consensus 375 NG~~~~ 380 (476)
T PRK09589 375 NGFGAI 380 (476)
T ss_pred CCcccC
Confidence 999953
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=7.2e-100 Score=780.18 Aligned_cols=360 Identities=30% Similarity=0.508 Sum_probs=308.5
Q ss_pred CCCCCCCCCCeeeeecccccccCCcCCCCCcCceeeecc---c-CCCccc----CC--CCCCCcCccccccHHHHHHHHH
Q 015181 21 ISRADFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFT---R-QPGRIM----DF--SNADTAVDQYHRFKSDIDLMKD 90 (411)
Q Consensus 21 ~~~~~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~~~~eD~~l~~~ 90 (411)
|++.+||++|+||+||||||||||+++||||+|+||.|+ + .++++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 456779999999999999999999999999999999998 3 244431 22 2678999999999999999999
Q ss_pred cCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHH
Q 015181 91 LGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAF 169 (411)
Q Consensus 91 lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 169 (411)
||+++|||||+|+||+|+| .+.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+
T Consensus 81 lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~ 160 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAE 160 (477)
T ss_pred cCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHH
Confidence 9999999999999999998 467899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceEEEEecCCccc-----ccccccC-CCC-CCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 015181 170 TCFQEFGDRVKYWITFNEPHGF-----TLQGYDT-GLQ-APGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYR 242 (411)
Q Consensus 170 ~~~~~~gd~v~~w~t~NEp~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r 242 (411)
.||++|||+|++|+|||||+++ +..||.. |.+ ||+. + ..++.++++||+++|||+||+++|
T Consensus 161 ~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~-~-----------~~~~~~~~~h~~llAHa~A~~~~~ 228 (477)
T PRK15014 161 VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE-N-----------PEETMYQVLHHQFVASALAVKAAR 228 (477)
T ss_pred HHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC-c-----------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 6678874 665 4432 1 124579999999999999999999
Q ss_pred HhhccCCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccC--CCCCHhhhhhh-c
Q 015181 243 INFKEKQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRL--PEITPEMSKAL-V 319 (411)
Q Consensus 243 ~~~~~~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~l--p~~t~~d~~~i-k 319 (411)
+.. ++++||++++..++||.+++|+|++||++++. ...||+||+++|+||+.|++.++++. |.++++|+++| +
T Consensus 229 ~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~ 304 (477)
T PRK15014 229 RIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLRE 304 (477)
T ss_pred HhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhc
Confidence 864 67999999999999999999999999998774 33459999999999999999998753 78999999999 5
Q ss_pred CCCceeeeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCE
Q 015181 320 GSLDFVGLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPM 399 (411)
Q Consensus 320 g~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI 399 (411)
+++||||||||+|.+|+..+.... . .... ....+ .|..+.+++|| +|||+|||.+|+++++||+ +||
T Consensus 305 ~~~DFlGiNyYt~~~v~~~~~~~~-----~---~~~~-~~~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi 371 (477)
T PRK15014 305 GTCDYLGFSYYMTNAVKAEGGTGD-----A---ISGF-EGSVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQ-KPL 371 (477)
T ss_pred CCCCEEEEcceeCeeeccCCCCCC-----C---cccc-ccccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcC-CCE
Confidence 999999999999999975321000 0 0000 00011 13345778999 5999999999999999997 589
Q ss_pred EEecCCCCCC
Q 015181 400 IITENGRSVV 409 (411)
Q Consensus 400 ~ITENG~~~~ 409 (411)
||||||++..
T Consensus 372 ~ItENG~~~~ 381 (477)
T PRK15014 372 FIVENGFGAY 381 (477)
T ss_pred EEeCCCCCCC
Confidence 9999999953
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=2.9e-99 Score=774.33 Aligned_cols=357 Identities=32% Similarity=0.539 Sum_probs=312.2
Q ss_pred CCCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCccc------------CCC--CCCCcCccccccHHHHHHHHH
Q 015181 25 DFPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIM------------DFS--NADTAVDQYHRFKSDIDLMKD 90 (411)
Q Consensus 25 ~fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~~~~eD~~l~~~ 90 (411)
+||++|+||+||||||||||+++||||+|+||.+++.++++. ++. ++++||||||||+||++||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999988655542 111 578999999999999999999
Q ss_pred cCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHH
Q 015181 91 LGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAF 169 (411)
Q Consensus 91 lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 169 (411)
||+++|||||+|+||+|+| .+.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998 456899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCcceEEEEecCCccccccccc-CCC-CCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015181 170 TCFQEFGDRVKYWITFNEPHGFTLQGYD-TGL-QAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKE 247 (411)
Q Consensus 170 ~~~~~~gd~v~~w~t~NEp~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~ 247 (411)
.||++|||+|++|+|||||++++..||. .|. +||+... .+..++++||+++|||+||+++|+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~------------~~~~~~~~hn~llAHa~A~~~~~~~~-- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ------------DQVKYQAAHHELVASALATKIAHEVN-- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc------------hHhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 9999999999999999999999999996 564 4786421 24579999999999999999999864
Q ss_pred CCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhccc--CCCCCHhhhhhhcCCCcee
Q 015181 248 KQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGR--LPEITPEMSKALVGSLDFV 325 (411)
Q Consensus 248 ~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFl 325 (411)
++++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|||
T Consensus 229 -~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFl 306 (474)
T PRK09852 229 -PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFV 306 (474)
T ss_pred -CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEE
Confidence 6789999999999999999999999998877 45789999999999999999999864 7999999999999999999
Q ss_pred eeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCC
Q 015181 326 GLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENG 405 (411)
Q Consensus 326 GiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG 405 (411)
|||||++.+|+........ . .. .. ..... .|..+.+++|| +|+|+|||++|+++++||+ .||||||||
T Consensus 307 GiNyYt~~~v~~~~~~~~~----~--~~-~~-~~~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~-~Pi~ItENG 374 (474)
T PRK09852 307 SFSYYASRCASAEMNANNS----S--AA-NV-VKSLR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQ-KPLFLVENG 374 (474)
T ss_pred EEccccCeecccCCCCCCC----C--cC-Cc-eeccc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcC-CCEEEeCCC
Confidence 9999999999753210000 0 00 00 00011 24456788999 6999999999999999997 589999999
Q ss_pred CCCC
Q 015181 406 RSVV 409 (411)
Q Consensus 406 ~~~~ 409 (411)
++..
T Consensus 375 ~~~~ 378 (474)
T PRK09852 375 LGAK 378 (474)
T ss_pred CCCC
Confidence 9954
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.1e-98 Score=760.77 Aligned_cols=350 Identities=45% Similarity=0.809 Sum_probs=318.4
Q ss_pred CCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccCCcc
Q 015181 26 FPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRI 105 (411)
Q Consensus 26 fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri 105 (411)
||++|+||+||||||+||+++++|||+|+||.+++.++++.++.++++||||||+|+||+++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988777666666889999999999999999999999999999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEe
Q 015181 106 FPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITF 185 (411)
Q Consensus 106 ~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~ 185 (411)
+|+|+|.+|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.+++++++|++||+.|+++|||+|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999987 999999999999999999999999999999999
Q ss_pred cCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEecCCccccC
Q 015181 186 NEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLSHAAAYHSYRINFKEKQGGQIGIALDAKWYEPK 265 (411)
Q Consensus 186 NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llAHa~a~~~~r~~~~~~~~~~VG~~~~~~~~~P~ 265 (411)
|||++++..||..|.+||+.++. +..++++||+++|||+||+++|+.. |+++||++++..+++|.
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~~------------~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRDL------------RAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPA 224 (427)
T ss_pred cCcceecccchhhccCCCCCccH------------HHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeC
Confidence 99999999999999999985431 3578999999999999999999864 67999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCCCHhhhhhhcCCCceeeeccCCcceeecCcchhhhh
Q 015181 266 SDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEITPEMSKALVGSLDFVGLNHYTTLYARNDRSRIQKL 345 (411)
Q Consensus 266 ~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~ 345 (411)
+++++|+.||++++++.++||+||++.|+||+.|++.++ .+|.|+++|+++|++++||||||||++.+|+..... .
T Consensus 225 ~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~-~-- 300 (427)
T TIGR03356 225 SDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGT-G-- 300 (427)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCC-C--
Confidence 999999999999999999999999999999999999997 479999999999999999999999999999763210 0
Q ss_pred hcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCC
Q 015181 346 ILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYVKHKYKNPPMIITENGRSVV 409 (411)
Q Consensus 346 ~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i~~rY~~~PI~ITENG~~~~ 409 (411)
... . .. .+..+.+++|| +|+|+|||.+|+++++||+++||||||||++..
T Consensus 301 --~~~-----~----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~ 350 (427)
T TIGR03356 301 --AGF-----V----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFD 350 (427)
T ss_pred --CCc-----c----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcC
Confidence 000 0 00 12235678999 699999999999999999877899999999853
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.32 E-value=4.1e-12 Score=128.17 Aligned_cols=109 Identities=27% Similarity=0.408 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHcCCCEEEE-cccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhh-----
Q 015181 79 HRFKSDIDLMKDLGMDAYRF-SISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKY----- 152 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~-si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~----- 152 (411)
..+++|+++|+++|+|++|+ .++|+++||+ +|.+|. ..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999997 5799999999 899995 5679999999999999999999999999998653
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCccc
Q 015181 153 ----------GG-----WLSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPHGF 191 (411)
Q Consensus 153 ----------gg-----~~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~~ 191 (411)
|+ ..+|...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 124567788888899999999984 7899999999864
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.26 E-value=1.7e-11 Score=117.69 Aligned_cols=109 Identities=22% Similarity=0.334 Sum_probs=90.1
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccc-cCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCC-C
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIF-PNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWL-S 157 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~-p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~-~ 157 (411)
..++|++.|+++|+|++|+.|.|..++ |...+.++.+.++.++++|+.+.++||.+||++|+. |.|.... +++. .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 578999999999999999999998888 553456999999999999999999999999999874 6664322 2333 3
Q ss_pred hhhHHHHHHHHHHHHHHhCC--cceEEEEecCCccc
Q 015181 158 RQIIEDFEHYAFTCFQEFGD--RVKYWITFNEPHGF 191 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp~~~ 191 (411)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 44578899999999999954 68899999999864
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.14 E-value=4.3e-09 Score=100.70 Aligned_cols=83 Identities=18% Similarity=0.355 Sum_probs=71.0
Q ss_pred ccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeE--EEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 015181 100 ISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQP--CVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGD 177 (411)
Q Consensus 100 i~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 177 (411)
..|++++|+ +|.+|.+. .|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~-~G~~n~~~---~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPS-RGQFNFSG---ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCC-CCccChHH---HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 369999999 89999654 588999999999995 4456778899998632 2 567789999999999999999
Q ss_pred cceEEEEecCCcc
Q 015181 178 RVKYWITFNEPHG 190 (411)
Q Consensus 178 ~v~~w~t~NEp~~ 190 (411)
+|..|.++|||..
T Consensus 73 ~i~~wdV~NE~~~ 85 (254)
T smart00633 73 KIYAWDVVNEALH 85 (254)
T ss_pred cceEEEEeeeccc
Confidence 9999999999985
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=98.83 E-value=2.6e-07 Score=91.07 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHh-----hCCCC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDK-----YGGWL 156 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~-----~gg~~ 156 (411)
++=+++||+.|+|++|+-+ | +-|...|..| ++.-.++..+++++||+.+|++|-=| .|- +. -..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD--~Wa-DPg~Q~~P~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSD--FWA-DPGKQNKPAAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSS--S---BTTB-B--TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccC--CCC-CCCCCCCCccCC
Confidence 3457999999999999987 3 4555226666 55668999999999999999997312 221 11 14687
Q ss_pred C---hhhHHHHHHHHHHHHHHhCC---cceEEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHH
Q 015181 157 S---RQIIEDFEHYAFTCFQEFGD---RVKYWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNI 230 (411)
Q Consensus 157 ~---~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~ 230 (411)
+ .+..+.-.+|.+.+.+.+++ .++++.+=||.+.-.+ +|.|... .+.-.-.+
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~---------------~~~~~a~l 155 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS---------------NWDNLAKL 155 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT----------------HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc---------------CHHHHHHH
Confidence 7 45677888888888777654 6899999999874222 3333311 13333455
Q ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEecCCccccCCCCHHHHHHHHHHHHhhcccccccccCCCCChhHHHhhcccCCCC
Q 015181 231 LLSHAAAYHSYRINFKEKQGGQIGIALDAKWYEPKSDSDEDKDAAQRAIDFGIGWFLDPLFFGEYPLSMRSLVDGRLPEI 310 (411)
Q Consensus 231 llAHa~a~~~~r~~~~~~~~~~VG~~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~~ldp~~~G~YP~~~~~~l~~~lp~~ 310 (411)
+.|-.+|| |+. .++.+|.+.+... .|... ..||.|-+..
T Consensus 156 l~ag~~AV---r~~---~p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~~------------------ 194 (332)
T PF07745_consen 156 LNAGIKAV---REV---DPNIKVMLHLANG---------GDNDL--------YRWFFDNLKA------------------ 194 (332)
T ss_dssp HHHHHHHH---HTH---SSTSEEEEEES-T---------TSHHH--------HHHHHHHHHH------------------
T ss_pred HHHHHHHH---Hhc---CCCCcEEEEECCC---------CchHH--------HHHHHHHHHh------------------
Confidence 55544544 554 3667887655432 12111 1223332211
Q ss_pred CHhhhhhhcCCCceeeeccCCcceeecCcchhhhhhcccccCCcceeeecccCCccccccCCCCCcccChHHHHHHHHHH
Q 015181 311 TPEMSKALVGSLDFVGLNHYTTLYARNDRSRIQKLILQDAYSDAAVITTSFRSGIAIGKRAASRWLHIVPWGIRKLARYV 390 (411)
Q Consensus 311 t~~d~~~ikg~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~t~~gW~~i~P~GL~~~L~~i 390 (411)
-....|.||++||.- | .-....|+..|+.+
T Consensus 195 -------~g~d~DviGlSyYP~------------------------------------------w-~~~l~~l~~~l~~l 224 (332)
T PF07745_consen 195 -------AGVDFDVIGLSYYPF------------------------------------------W-HGTLEDLKNNLNDL 224 (332)
T ss_dssp -------TTGG-SEEEEEE-ST------------------------------------------T-ST-HHHHHHHHHHH
T ss_pred -------cCCCcceEEEecCCC------------------------------------------C-cchHHHHHHHHHHH
Confidence 123569999999941 1 11345799999999
Q ss_pred HHHCCCCCEEEecCCCCCC
Q 015181 391 KHKYKNPPMIITENGRSVV 409 (411)
Q Consensus 391 ~~rY~~~PI~ITENG~~~~ 409 (411)
.+||+ +||+|+|.|++..
T Consensus 225 ~~ry~-K~V~V~Et~yp~t 242 (332)
T PF07745_consen 225 ASRYG-KPVMVVETGYPWT 242 (332)
T ss_dssp HHHHT--EEEEEEE---SB
T ss_pred HHHhC-CeeEEEecccccc
Confidence 99995 8999999997643
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.50 E-value=2.7e-07 Score=98.14 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=91.4
Q ss_pred ccHHHHHHHHHcCCCEEEEc-ccCCccccCCCCCCChhHHHHHHHH-HHHHHHcCCeEEEEc-CCCCCchHHHHhh----
Q 015181 80 RFKSDIDLMKDLGMDAYRFS-ISWPRIFPNGTGEPNPEGISYYNSL-IDALLEKGIQPCVTL-YHWDLPQVLEDKY---- 152 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~s-i~W~ri~p~g~g~~n~~~~~~y~~~-i~~l~~~gi~p~vtl-~h~~~P~~l~~~~---- 152 (411)
-+++|++.||++|+|++|.+ ++|++++|+ .|.+|.+ +.|.. ++.+.+.||.+++.- .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 36789999999999999995 599999999 8999976 56777 999999999999988 7789999998765
Q ss_pred -----------CCCCChhhH-HHHHHHHHH----HHHH-hCC--cceEEEEecCCcc-cccccccCCCC
Q 015181 153 -----------GGWLSRQII-EDFEHYAFT----CFQE-FGD--RVKYWITFNEPHG-FTLQGYDTGLQ 201 (411)
Q Consensus 153 -----------gg~~~~~~~-~~f~~ya~~----~~~~-~gd--~v~~w~t~NEp~~-~~~~gy~~g~~ 201 (411)
++|.+-+.. ..|.+|++. +.+| ||+ .|-.|.+-||-.. .+++.|....|
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f 175 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAF 175 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHH
Confidence 455433322 246666666 7788 876 4789999998776 45555544433
No 19
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.12 E-value=1e-05 Score=82.69 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhh---CCC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKY---GGW 155 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~---gg~ 155 (411)
++|+..||+.|+|++|+.|.|..+.+.+ +...+...+.+.+++|+.+++.||.++++||+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999966665542 2223234456899999999999999999999866222111110 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCcc
Q 015181 156 L-SRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPHG 190 (411)
Q Consensus 156 ~-~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 190 (411)
. ....++++.+-.+.++.||++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3456799999999999999973 444679999985
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.93 E-value=3.4e-05 Score=80.68 Aligned_cols=106 Identities=25% Similarity=0.434 Sum_probs=62.6
Q ss_pred cHHHHHHHH-HcCCCEEEEc--c--cCCcccc-CCCC--CCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHh-
Q 015181 81 FKSDIDLMK-DLGMDAYRFS--I--SWPRIFP-NGTG--EPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDK- 151 (411)
Q Consensus 81 ~~eD~~l~~-~lG~~~~R~s--i--~W~ri~p-~g~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~- 151 (411)
+++.++.++ ++|++.+||- + +..-... ++.| .+|+ ...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 555666665 9999999986 2 2222222 2223 2784 66699999999999999999975 77776422
Q ss_pred -----hCCCC-ChhhHHHHHHHHHHHHHHhCC-----cce--EEEEecCCccc
Q 015181 152 -----YGGWL-SRQIIEDFEHYAFTCFQEFGD-----RVK--YWITFNEPHGF 191 (411)
Q Consensus 152 -----~gg~~-~~~~~~~f~~ya~~~~~~~gd-----~v~--~w~t~NEp~~~ 191 (411)
+.|+. .|+..+.|.++++.+++|+-+ .|. +|.+||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 11222 345677888877766665543 465 56899999973
No 21
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0016 Score=62.37 Aligned_cols=136 Identities=20% Similarity=0.355 Sum_probs=79.1
Q ss_pred CCCCCCCeeeeeccc-ccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccC
Q 015181 24 ADFPDGFIFGTASSA-YQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISW 102 (411)
Q Consensus 24 ~~fp~~FlwG~Atsa-~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W 102 (411)
...|+||+-|+-.|. .|+|-. ++ .|... ++. -++-++.+|+.|+|.+|+-| |
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gv-------kf~d~--------ng~--------~qD~~~iLK~~GvNyvRlRv-w 85 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GV-------KFFDT--------NGV--------RQDALQILKNHGVNYVRLRV-W 85 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cc-------eEEcc--------CCh--------HHHHHHHHHHcCcCeEEEEE-e
Confidence 458999999997654 677641 11 11111 111 13347999999999999976 2
Q ss_pred Cccc-cCC----CCCCChhHHHHHHHHHHHHHHcCCeEEEEcC---CCCCchHHHHhhCCCCCh---hhHHHHHHHHHHH
Q 015181 103 PRIF-PNG----TGEPNPEGISYYNSLIDALLEKGIQPCVTLY---HWDLPQVLEDKYGGWLSR---QIIEDFEHYAFTC 171 (411)
Q Consensus 103 ~ri~-p~g----~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~---h~~~P~~l~~~~gg~~~~---~~~~~f~~ya~~~ 171 (411)
-.=- .+| -|.-| ++---.+-+.++++||++++++| ||.=|.- +++-..|.+- +.-.+--+|.+.+
T Consensus 86 ndP~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW~~l~fe~lk~avy~yTk~~ 161 (403)
T COG3867 86 NDPYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAWENLNFEQLKKAVYSYTKYV 161 (403)
T ss_pred cCCccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHhhhcCHHHHHHHHHHHHHHH
Confidence 1111 111 12333 34445778889999999999987 3554542 1121346532 2223334455555
Q ss_pred HH---HhCCcceEEEEecCCcc
Q 015181 172 FQ---EFGDRVKYWITFNEPHG 190 (411)
Q Consensus 172 ~~---~~gd~v~~w~t~NEp~~ 190 (411)
.. +=|=...+..+=||-+-
T Consensus 162 l~~m~~eGi~pdmVQVGNEtn~ 183 (403)
T COG3867 162 LTTMKKEGILPDMVQVGNETNG 183 (403)
T ss_pred HHHHHHcCCCccceEeccccCC
Confidence 44 44556778889999763
No 22
>PRK10150 beta-D-glucuronidase; Provisional
Probab=97.90 E-value=0.00061 Score=73.22 Aligned_cols=94 Identities=18% Similarity=0.174 Sum_probs=66.1
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH-------h
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLED-------K 151 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~-------~ 151 (411)
..+..|+++||++|+|++|+|- .|. + ..+++.|=+.||-++.-+.-+....|... .
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~-----~-------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPY-----S-------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCC-----C-------HHHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 3468899999999999999952 233 1 36788899999988876543322222210 0
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCc
Q 015181 152 YGGWL----SRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPH 189 (411)
Q Consensus 152 ~gg~~----~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 189 (411)
...|. +++..+.+.+-++.++++++++ |-.|.+.||+.
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 01222 3567788889899999999985 67999999973
No 23
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.90 E-value=6.9e-05 Score=74.16 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=86.1
Q ss_pred CCCCCeeeeecccccccCCcCCCCCcCceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEc--ccCC
Q 015181 26 FPDGFIFGTASSAYQFEGAVNEGNKGPSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFS--ISWP 103 (411)
Q Consensus 26 fp~~FlwG~Atsa~Q~EG~~~~dgk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~s--i~W~ 103 (411)
.+++|.+|+|.++.++++.. ..+.+-.--+|.+-.. ..|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------------------------------------~~~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------------------------------------RYRELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------------------------------------HHHHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH--------------------------------------HHHHHHHHhCCeeeeccccchh
Confidence 46788999999999887620 0111112234444443 7899
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEE--EcCCCCCchHHHHhhCCCCChh---hHHHHHHHHHHHHHHhCC-
Q 015181 104 RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCV--TLYHWDLPQVLEDKYGGWLSRQ---IIEDFEHYAFTCFQEFGD- 177 (411)
Q Consensus 104 ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v--tl~h~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~gd- 177 (411)
.++|. +|.+|.+. .|++++-++++||++-- .+.|--.|.|+... .-+...+ ..+...+|.+.+++||++
T Consensus 48 ~~e~~-~g~~~~~~---~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~ 122 (320)
T PF00331_consen 48 SIEPE-PGRFNFES---ADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDK 122 (320)
T ss_dssp HHESB-TTBEE-HH---HHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhcCC-CCccCccc---hhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccc
Confidence 99999 89999654 58999999999999873 34466789999753 1233333 678899999999999995
Q ss_pred -cceEEEEecCCccc
Q 015181 178 -RVKYWITFNEPHGF 191 (411)
Q Consensus 178 -~v~~w~t~NEp~~~ 191 (411)
+|..|-++|||...
T Consensus 123 g~i~~WDVvNE~i~~ 137 (320)
T PF00331_consen 123 GRIYAWDVVNEAIDD 137 (320)
T ss_dssp TTESEEEEEES-B-T
T ss_pred cceEEEEEeeecccC
Confidence 89999999999753
No 24
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.72 E-value=0.00011 Score=72.68 Aligned_cols=108 Identities=18% Similarity=0.177 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC--------CCCCchHHHHh
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY--------HWDLPQVLEDK 151 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~--------h~~~P~~l~~~ 151 (411)
.|++-++.||++|+|++-+-|.|.-.||+ +|.+|.++..=.+.+|+.++++|+.+++-.- .-.+|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 47788999999999999999999999999 8999999988889999999999999887541 23589999865
Q ss_pred hCCCC---ChhhHHHHHHHHHHHHHHhCC-------cceEEEEecCC
Q 015181 152 YGGWL---SRQIIEDFEHYAFTCFQEFGD-------RVKYWITFNEP 188 (411)
Q Consensus 152 ~gg~~---~~~~~~~f~~ya~~~~~~~gd-------~v~~w~t~NEp 188 (411)
.+... ++...++-.+|.+.+++...+ -|-..++=||.
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEy 150 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEY 150 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhh
Confidence 33322 445556666666666665543 24455666664
No 25
>PLN03059 beta-galactosidase; Provisional
Probab=97.23 E-value=0.0019 Score=70.47 Aligned_cols=107 Identities=15% Similarity=0.117 Sum_probs=82.9
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--------CCCCCchHHHHh
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--------YHWDLPQVLEDK 151 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--------~h~~~P~~l~~~ 151 (411)
.|++=++.||++|+|++-.=|.|.-.||+ +|.+|.+|..=..++|+.+.+.|+-+|+-. -.-.+|.||...
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 46667999999999999999999999999 899999998888999999999999988754 245899999753
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhC---------CcceEEEEecCC
Q 015181 152 YGGWL----SRQIIEDFEHYAFTCFQEFG---------DRVKYWITFNEP 188 (411)
Q Consensus 152 ~gg~~----~~~~~~~f~~ya~~~~~~~g---------d~v~~w~t~NEp 188 (411)
.|.. ++.+.++-.+|.+.+++... .-|-..++=||-
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 4432 45556666666666666663 224455566663
No 26
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.17 E-value=0.00078 Score=67.62 Aligned_cols=106 Identities=18% Similarity=0.333 Sum_probs=80.1
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------CCCc
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------WDLP 145 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~~~P 145 (411)
+.-.+..++.+|++|+..+-+.+=|.-+|.++++++|+ ..|+++++.+++.|++..+.|. | ..||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 44788999999999999999999999999998999995 6799999999999999877662 2 4789
Q ss_pred hHHHHh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCc
Q 015181 146 QVLEDK-----------YGG--------WLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPH 189 (411)
Q Consensus 146 ~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 189 (411)
.|+.+. .|. |....+++.|.+|-+.+.++|.+.. -|+-|..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 998753 122 3344449999999999999997764 4555543
No 27
>PLN02161 beta-amylase
Probab=97.04 E-value=0.0019 Score=66.20 Aligned_cols=111 Identities=18% Similarity=0.295 Sum_probs=86.4
Q ss_pred CccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-CC-----------
Q 015181 75 VDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-HW----------- 142 (411)
Q Consensus 75 ~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h~----------- 142 (411)
..+..-.+..++.+|.+|+..+-+.+=|--+|.++++++|+ ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 45666678899999999999999999999999998999995 6699999999999999777764 32
Q ss_pred CCchHHHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 143 DLPQVLEDK--------Y---GGW----------------LSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 143 ~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
.||.|+.+. | .|. ..+.-++.|.+|-+-+.++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 599998752 0 121 1233468899999888888877653 36666544
No 28
>PLN02803 beta-amylase
Probab=97.00 E-value=0.0027 Score=65.44 Aligned_cols=107 Identities=18% Similarity=0.291 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------CCCch
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------WDLPQ 146 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~~~P~ 146 (411)
.-.+..++.+|.+|+..+-+.+=|--+|.++++++|+ ..|+++++.+++.|++..+.|. | ..||.
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 4467799999999999999999999999999999995 6689999999999999777764 3 36999
Q ss_pred HHHHh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 147 VLEDK--------Y---GGW----------------LSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 147 ~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
|+.+. | .|- ..+.-++.|.+|-+-+..+|.+... -|+.|..+
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 98752 0 121 2233457888888888888877543 45555443
No 29
>PLN00197 beta-amylase; Provisional
Probab=96.96 E-value=0.0032 Score=65.10 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=82.9
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------CCCch
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------WDLPQ 146 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~~~P~ 146 (411)
.-.+..++.+|.+|+..+-+.+=|--+|+++++++|+ ..|+++++.+++.|++..+.|. | ..||.
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 3478889999999999999999999999999999995 6689999999999999777764 3 36999
Q ss_pred HHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 147 VLEDKY-----------GGW----------------LSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 147 ~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
|+.+.- .|- ..|.-++.|.+|-+-+..+|.+... -|+.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 987530 121 1223368888888888888877544 35655443
No 30
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.94 E-value=0.0023 Score=64.03 Aligned_cols=99 Identities=22% Similarity=0.378 Sum_probs=55.6
Q ss_pred HcCCCEEEEcc---c------------CCccc--cCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhh
Q 015181 90 DLGMDAYRFSI---S------------WPRIF--PNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKY 152 (411)
Q Consensus 90 ~lG~~~~R~si---~------------W~ri~--p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~ 152 (411)
.+|++.+|+.| + |.|.+ +..+|.+|+.+=+-=+.++++++++|++.++.. -+..|.|+...
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF-SNSPP~~MT~N- 135 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFEAF-SNSPPWWMTKN- 135 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EEEE--SSS-GGGSSS-
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe-ecCCCHHHhcC-
Confidence 48999999877 2 33432 222577777654455679999999999988744 46777776432
Q ss_pred C----C-----CCChhhHHHHHHHHHHHHHHhCC---cceEEEEecCCcc
Q 015181 153 G----G-----WLSRQIIEDFEHYAFTCFQEFGD---RVKYWITFNEPHG 190 (411)
Q Consensus 153 g----g-----~~~~~~~~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~ 190 (411)
| + =+.++..++|++|-..|+++|.. .+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 2 1 14567789999999999999943 6899999999983
No 31
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.91 E-value=0.0027 Score=61.61 Aligned_cols=87 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred EcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEE-E-cCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHh
Q 015181 98 FSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCV-T-LYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEF 175 (411)
Q Consensus 98 ~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v-t-l~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~ 175 (411)
=-..|.-|+|+ +|.+|+++- |.+.+-++++||..-- | +.|--.|.|+.. .-+..+...+...++-..|++||
T Consensus 65 nemKwe~i~p~-~G~f~Fe~A---D~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPE-RGRFNFEAA---DAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCC-CCccCccch---HHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 34579999998 899998765 7999999999998532 2 234567999853 34777889999999999999999
Q ss_pred CCcceEEEEecCCcc
Q 015181 176 GDRVKYWITFNEPHG 190 (411)
Q Consensus 176 gd~v~~w~t~NEp~~ 190 (411)
.+.|..|-+.|||.-
T Consensus 139 kg~~~sWDVVNE~vd 153 (345)
T COG3693 139 KGSVASWDVVNEAVD 153 (345)
T ss_pred cCceeEEEecccccC
Confidence 999999999999975
No 32
>PLN02801 beta-amylase
Probab=96.83 E-value=0.0067 Score=62.30 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=79.0
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------CCC
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------WDL 144 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~~~ 144 (411)
+-.-.+..++.+|.+|+..+-+.+=|--+|.++++++|+ ..|+++++.+++.|++..+.|. | ..+
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 334478889999999999999999999999998999995 6689999999999999777664 2 369
Q ss_pred chHHHHhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCcc
Q 015181 145 PQVLEDKY-----------GGW----------------LSRQIIEDFEHYAFTCFQEFGDRV 179 (411)
Q Consensus 145 P~~l~~~~-----------gg~----------------~~~~~~~~f~~ya~~~~~~~gd~v 179 (411)
|.|+.+.- .|- ..+.-++.|.+|-+-+.++|.+..
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 99987520 121 123346888888888888887643
No 33
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.82 E-value=0.014 Score=57.01 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCCEEEEcc--cCCcc-c----cC-----C-C-----CCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q 015181 83 SDIDLMKDLGMDAYRFSI--SWPRI-F----PN-----G-T-----GEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDL 144 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si--~W~ri-~----p~-----g-~-----g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~ 144 (411)
.=++..|+.|+|.+|+.+ .|.+. . |. . + ..+|++-+++.+++|+.|.+.||.+.+.+.| +.
T Consensus 34 ~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~ 112 (289)
T PF13204_consen 34 QYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GC 112 (289)
T ss_dssp HHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HH
T ss_pred HHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CC
Confidence 337888999999999998 45543 1 11 0 1 1379999999999999999999999877765 22
Q ss_pred chHHHHhhCCCCC---hhhHHHHHHHHHHHHHHhCCc-ceEEEEecCC
Q 015181 145 PQVLEDKYGGWLS---RQIIEDFEHYAFTCFQEFGDR-VKYWITFNEP 188 (411)
Q Consensus 145 P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~gd~-v~~w~t~NEp 188 (411)
|. .+ +.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 113 ~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 113 PY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred cc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 21 11 44532 233677889999999999998 4789999985
No 34
>PLN02905 beta-amylase
Probab=96.70 E-value=0.0091 Score=62.57 Aligned_cols=101 Identities=18% Similarity=0.286 Sum_probs=80.3
Q ss_pred CccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------C
Q 015181 75 VDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------W 142 (411)
Q Consensus 75 ~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~ 142 (411)
..+..-.+..++.+|.+|+..+-+.+=|--+|+++++++|+ ..|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 35566678899999999999999999999999999999995 6689999999999999777764 3 3
Q ss_pred CCchHHHHh--------h---CCCC----------------ChhhHHHHHHHHHHHHHHhCCc
Q 015181 143 DLPQVLEDK--------Y---GGWL----------------SRQIIEDFEHYAFTCFQEFGDR 178 (411)
Q Consensus 143 ~~P~~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~~gd~ 178 (411)
.||.|+.+. | .|.. .+.-++.|.+|.+-+..+|.+.
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699998752 0 1211 2344688888888888887664
No 35
>PLN02705 beta-amylase
Probab=96.61 E-value=0.0083 Score=62.67 Aligned_cols=99 Identities=21% Similarity=0.236 Sum_probs=78.4
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-C-----------CCC
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY-H-----------WDL 144 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h-----------~~~ 144 (411)
+-.-.+..++.+|.+|+..+-+.+=|--+|.++++++|+ ..|+++++.+++.|++..+.|. | ..|
T Consensus 266 ~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 266 DPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 345578889999999999999999999999998999995 6689999999999999777664 3 369
Q ss_pred chHHHHh--------h---CCCC----------------ChhhHHHHHHHHHHHHHHhCCc
Q 015181 145 PQVLEDK--------Y---GGWL----------------SRQIIEDFEHYAFTCFQEFGDR 178 (411)
Q Consensus 145 P~~l~~~--------~---gg~~----------------~~~~~~~f~~ya~~~~~~~gd~ 178 (411)
|.|+.+. | .|-. .+.-++.|.+|.+.+..+|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998752 0 1211 2334688888888888888664
No 36
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.56 E-value=0.018 Score=56.26 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=63.2
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhC---
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYG--- 153 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~g--- 153 (411)
....++.|+++||++|+|++|++. .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~ 94 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCN 94 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTS
T ss_pred CHHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCccc
Confidence 346789999999999999999943 222 1 477888999999999776432211111 001
Q ss_pred -CCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCC
Q 015181 154 -GWLSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEP 188 (411)
Q Consensus 154 -g~~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp 188 (411)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0135778888888899999999874 8899999998
No 37
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.54 E-value=0.061 Score=56.94 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--------CCCCCchHHHHh
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--------YHWDLPQVLEDK 151 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--------~h~~~P~~l~~~ 151 (411)
.|++=++.+|++|+|++..=+-|.-.||. +|++|.+|.-=..++|..+.++|+=+++-+ .+-.+|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 46777999999999999999999999999 899999987666788999999998776654 466889888754
Q ss_pred hCCC----CChhhHHHHHHHHHHHHHHhC-------CcceEEEEecCCc
Q 015181 152 YGGW----LSRQIIEDFEHYAFTCFQEFG-------DRVKYWITFNEPH 189 (411)
Q Consensus 152 ~gg~----~~~~~~~~f~~ya~~~~~~~g-------d~v~~w~t~NEp~ 189 (411)
-|- .|+.+..++.+|.+.++...+ .-|-.-++=||-.
T Consensus 129 -pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 129 -PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred -CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 442 377788888999988887433 1244445666644
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.32 E-value=0.16 Score=45.44 Aligned_cols=102 Identities=20% Similarity=0.311 Sum_probs=66.7
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccc-----cCC--CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHh
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIF-----PNG--TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDK 151 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~-----p~g--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~ 151 (411)
.+|+++++.|+++|++++=+. |+... |.. ++.+.....+....+++++.++||++++.|+. -|.|.. .
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~-~ 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWD-Q 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhh-c
Confidence 358999999999999988543 43332 221 11223344578899999999999999999974 355654 2
Q ss_pred hCCCCChh-hHHHHHHHHHHHHHHhCCc--ceEEEEecCCc
Q 015181 152 YGGWLSRQ-IIEDFEHYAFTCFQEFGDR--VKYWITFNEPH 189 (411)
Q Consensus 152 ~gg~~~~~-~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 189 (411)
.+.+ -++.=..-++.+.++||.+ +.-|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 2233344677788888874 55666666654
No 39
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.15 E-value=0.4 Score=54.79 Aligned_cols=91 Identities=19% Similarity=0.137 Sum_probs=64.3
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC---CCCCchHHHHhhC
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY---HWDLPQVLEDKYG 153 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~---h~~~P~~l~~~~g 153 (411)
....+++|+++||++|+|++|+| ..|.. ..+.+.|=+.||=++--.. |--.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH------------PLWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 34567899999999999999995 23331 3566888899998886642 211110 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCc
Q 015181 154 GWLSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPH 189 (411)
Q Consensus 154 g~~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 189 (411)
...+++..+.+.+=++.+++|.+.+ |-.|...||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124566777777788999999985 78999999975
No 40
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.04 E-value=0.67 Score=53.01 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=63.4
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC---C-CCCchHHHHhhC
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY---H-WDLPQVLEDKYG 153 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~---h-~~~P~~l~~~~g 153 (411)
...+++|+++||++|+|++|+| ..|.. ..+.+.|=+.||=++--.. | |.... .+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~------------~~fydlcDe~GllV~dE~~~e~~g~~~~~----~~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND------------PRFYELCDIYGLFVMAETDVESHGFANVG----DI- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC------------HHHHHHHHHCCCEEEECCcccccCccccc----cc-
Confidence 4678999999999999999996 24441 3667888899998776531 1 21110 00
Q ss_pred CC--CChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCc
Q 015181 154 GW--LSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPH 189 (411)
Q Consensus 154 g~--~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~ 189 (411)
.+ .++...+.|.+=++.+++|.+.+ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 11 23445567777788999999985 78999999973
No 41
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=90.25 E-value=1.6 Score=48.52 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=67.7
Q ss_pred CccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCC
Q 015181 75 VDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGG 154 (411)
Q Consensus 75 ~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg 154 (411)
+-.+..+.+|+++||++|+|++|.| -.|+. ..+.+.|=+.||=+|=...+.. .++
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~~~--------~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMIET--------HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecchhh--------cCC
Confidence 4455669999999999999999998 55552 4677788889998886553311 133
Q ss_pred CCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCcc
Q 015181 155 WLSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPHG 190 (411)
Q Consensus 155 ~~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 190 (411)
...++..+...+=++..++|-+++ |-.|..-||...
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 455666677777788889988874 889999999663
No 42
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=89.92 E-value=0.5 Score=47.62 Aligned_cols=101 Identities=16% Similarity=0.268 Sum_probs=71.2
Q ss_pred HHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCC--ChhhHHHHH
Q 015181 88 MKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWL--SRQIIEDFE 165 (411)
Q Consensus 88 ~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~--~~~~~~~f~ 165 (411)
-+|+|++-+|.---|.-++-+ =-++ ..++++++|.+...|+.-+.+-.||..+.-...+|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 358899999888888822222 2244 578899999999999554555567776665443333321 234789999
Q ss_pred HHHHHHHHHhCCc-ceEE--EEecCCccccc
Q 015181 166 HYAFTCFQEFGDR-VKYW--ITFNEPHGFTL 193 (411)
Q Consensus 166 ~ya~~~~~~~gd~-v~~w--~t~NEp~~~~~ 193 (411)
++++.|+.++|-+ |.-| ..+||||..+-
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 9999999999953 5555 79999998753
No 43
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=87.81 E-value=0.23 Score=50.88 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=80.0
Q ss_pred ccHHHHHHHHHcCCCEEEEcccC-CccccCCCCCCChhH-HHHHHHHHHHHHHcCCeEEEEcC----CCCCchHHHHhhC
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISW-PRIFPNGTGEPNPEG-ISYYNSLIDALLEKGIQPCVTLY----HWDLPQVLEDKYG 153 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W-~ri~p~g~g~~n~~~-~~~y~~~i~~l~~~gi~p~vtl~----h~~~P~~l~~~~g 153 (411)
..+.|++.++.+|++..|++|-= ..+--+ .|..|.+. +.+.+.+++.+...+|+.++||. |+.-=.|..-=.|
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDK-EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhh-hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 34578999999999999999632 334333 57888776 88999999999999999999985 3221111100001
Q ss_pred C------CCChhhHHHHHHHHHHHHHHhCCc--ceEEEEecCCcc
Q 015181 154 G------WLSRQIIEDFEHYAFTCFQEFGDR--VKYWITFNEPHG 190 (411)
Q Consensus 154 g------~~~~~~~~~f~~ya~~~~~~~gd~--v~~w~t~NEp~~ 190 (411)
+ ...+++...|.+|++.+++.|+.. +--|..-|||-+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1 235567788999999999999864 677999999766
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=86.36 E-value=1.9 Score=38.38 Aligned_cols=63 Identities=22% Similarity=0.371 Sum_probs=44.4
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCcccc--CCCC-------CCCh--hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFP--NGTG-------EPNP--EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p--~g~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.+....+-+..++++|++++-++--+..... ...| .+|+ ...+=++++|++|+++||++|+++
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3555677788999999999998865555431 1011 1221 134567899999999999999987
No 45
>PLN02361 alpha-amylase
Probab=82.59 E-value=3 Score=42.68 Aligned_cols=64 Identities=11% Similarity=0.195 Sum_probs=47.8
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCccccCCCC-----CCCh--hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 76 DQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTG-----EPNP--EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 76 d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g-----~~n~--~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.+|....+-++.+++||++++=++=......+.|-. .+|. ...+=++++|++|+++||++|+++
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488899999999999999999988655544444311 1121 123457899999999999999985
No 46
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.06 E-value=7.7 Score=37.52 Aligned_cols=119 Identities=15% Similarity=0.177 Sum_probs=70.7
Q ss_pred CceeeecccCCCcccCCCCCCCcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCC-CCCChhHHHHHHHHHHHHHH
Q 015181 52 PSIWDSFTRQPGRIMDFSNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGT-GEPNPEGISYYNSLIDALLE 130 (411)
Q Consensus 52 ~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~ 130 (411)
.+.|+-|....+. . .+..+.--+..+++=|+..+++|+..+=+.--|+.-.+... .......-....++++..++
T Consensus 9 k~~W~Ww~~~~~~---~-~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK---G-VGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS---S-BSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC---C-CCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 5677766543221 1 12234456788999999999999999999999997332210 00011111334799999999
Q ss_pred cCCeEEEEcCCCC------CchHHHH---hh---C------CC---CChhhHHHHHHHHHHHHHH
Q 015181 131 KGIQPCVTLYHWD------LPQVLED---KY---G------GW---LSRQIIEDFEHYAFTCFQE 174 (411)
Q Consensus 131 ~gi~p~vtl~h~~------~P~~l~~---~~---g------g~---~~~~~~~~f~~ya~~~~~~ 174 (411)
+|+.+++-.+|-+ +=..+.+ .| | +| .+...++.|.+.++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999998755 2111111 11 1 23 3456788888888887764
No 47
>PLN00196 alpha-amylase; Provisional
Probab=80.67 E-value=3.3 Score=42.70 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=46.1
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCC-----CCCh---hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTG-----EPNP---EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g-----~~n~---~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
+|....+.+..+++||++++=++=......+.|-. .+|. ...+=++++|++++++||++|++.
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 46667888999999999999998665554444311 1221 123457899999999999999985
No 48
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=80.67 E-value=1.8 Score=40.89 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHCCCCCEEEecCCCCC
Q 015181 381 WGIRKLARYVKHKYKNPPMIITENGRSV 408 (411)
Q Consensus 381 ~GL~~~L~~i~~rY~~~PI~ITENG~~~ 408 (411)
.++...|+.++++|+ +||.|||-|+..
T Consensus 151 ~~~~~~i~~~~~~~~-kPIWITEf~~~~ 177 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG-KPIWITEFGCWN 177 (239)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeecccC
Confidence 368889999999997 899999999753
No 49
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=80.55 E-value=13 Score=36.35 Aligned_cols=87 Identities=17% Similarity=0.280 Sum_probs=61.9
Q ss_pred ccccHHHHHHHHHcCCCEEEEcc---cCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCC
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSI---SWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGG 154 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si---~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg 154 (411)
..||.+-.+++++.|+|.+-+.= .-..+.|+ -++...++-+.++.+||++.+++. |..|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~--------~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE--------YLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT--------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH--------HHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46888889999999999987641 22222222 367778999999999999999996 7778653 55
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCC
Q 015181 155 -----WLSRQIIEDFEHYAFTCFQEFGD 177 (411)
Q Consensus 155 -----~~~~~~~~~f~~ya~~~~~~~gd 177 (411)
-++++++..+.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35789999999999999988765
No 50
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=79.93 E-value=3.7 Score=38.78 Aligned_cols=113 Identities=17% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCC--------------CCchH--HH--------------HhhCC----CCChh-----
Q 015181 119 SYYNSLIDALLEKGIQPCVTLYHW--------------DLPQV--LE--------------DKYGG----WLSRQ----- 159 (411)
Q Consensus 119 ~~y~~~i~~l~~~gi~p~vtl~h~--------------~~P~~--l~--------------~~~gg----~~~~~----- 159 (411)
+.++.+|+.-+++|..+|+||.=- ..|.| -. .+.+| -.+|+
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999998421 11111 00 00011 11333
Q ss_pred -hHHHHHHHHHHHHHHhCCc-----ceEEEEecCCcccccccccCCCCCCCCccccccccccCCCCCchHHHHHHHHHHH
Q 015181 160 -IIEDFEHYAFTCFQEFGDR-----VKYWITFNEPHGFTLQGYDTGLQAPGRCSILGHLFCKTGKSSIEPYVVAHNILLS 233 (411)
Q Consensus 160 -~~~~f~~ya~~~~~~~gd~-----v~~w~t~NEp~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~llA 233 (411)
..+.| +..+..+||.. |++|..=|||.+... =-..++|-. -.+.-+....++
T Consensus 104 ~y~~ew---V~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~--TH~dVHP~~-----------------~t~~El~~r~i~ 161 (239)
T PF12891_consen 104 VYMDEW---VNYLVNKYGNASTNGGVKYYSLDNEPDLWHS--THRDVHPEP-----------------VTYDELRDRSIE 161 (239)
T ss_dssp EEHHHH---HHHHHHHH--TTSTTS--EEEESS-GGGHHH--HTTTT--S--------------------HHHHHHHHHH
T ss_pred hHHHHH---HHHHHHHHhccccCCCceEEEecCchHhhcc--cccccCCCC-----------------CCHHHHHHHHHH
Confidence 34555 66677777765 999999999997432 111234322 123445566677
Q ss_pred HHHHHHHHHHhhccCCCCe-EEEEecC
Q 015181 234 HAAAYHSYRINFKEKQGGQ-IGIALDA 259 (411)
Q Consensus 234 Ha~a~~~~r~~~~~~~~~~-VG~~~~~ 259 (411)
.|+|+|..- |.++ +|.+.-.
T Consensus 162 ~AkaiK~~D------P~a~v~GP~~wg 182 (239)
T PF12891_consen 162 YAKAIKAAD------PDAKVFGPVEWG 182 (239)
T ss_dssp HHHHHHHH-------TTSEEEEEEE-S
T ss_pred HHHHHHhhC------CCCeEeechhhc
Confidence 788776543 6666 5666443
No 51
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=79.27 E-value=3.9 Score=39.04 Aligned_cols=57 Identities=28% Similarity=0.489 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC-CC-------CCC--hhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG-TG-------EPN--PEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g-------~~n--~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
.+-++.+|+||++++-++=-+. .|.+ -| .+| ....+=+++||++|+++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999985444 2211 11 111 22456678999999999999999873
No 52
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=78.93 E-value=13 Score=36.55 Aligned_cols=90 Identities=21% Similarity=0.266 Sum_probs=49.4
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChh
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQ 159 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~ 159 (411)
-.+.|+.+||+||+|++|+= -|-|+ . =.+.-.+.|.++||=++++|.- |.--.++...|.. =
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~----~------nHd~CM~~~~~aGIYvi~Dl~~---p~~sI~r~~P~~s-w 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPS----K------NHDECMSAFADAGIYVILDLNT---PNGSINRSDPAPS-W 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B---TTBS--TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCC----C------CHHHHHHHHHhCCCEEEEecCC---CCccccCCCCcCC-C
Confidence 46899999999999999973 23333 1 2477888899999999999953 3211112111110 0
Q ss_pred hHHHHHHHHHHHHHHhCC--cceEEEEecCC
Q 015181 160 IIEDFEHYAFTCFQEFGD--RVKYWITFNEP 188 (411)
Q Consensus 160 ~~~~f~~ya~~~~~~~gd--~v~~w~t~NEp 188 (411)
....|.+|... ++.|.. .+--+..=||-
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNEV 145 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNEV 145 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEESS
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEeccee
Confidence 13455555554 444443 45556666663
No 53
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.41 E-value=13 Score=38.60 Aligned_cols=111 Identities=23% Similarity=0.413 Sum_probs=70.8
Q ss_pred ccccHHHHHHHHHcCCCEEEEc----ccCCccccCC----------------------------CCCCChh----HHHHH
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFS----ISWPRIFPNG----------------------------TGEPNPE----GISYY 121 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~s----i~W~ri~p~g----------------------------~g~~n~~----~~~~y 121 (411)
|.+|+..|+-|+=.|+|..=-. +-|.+|+-.- .|...+. -+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999965433 2466665430 1222211 12223
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCchHHHHhh--------CCCC---------------ChhhHHHHHHHHHHHHHHhCCc
Q 015181 122 NSLIDALLEKGIQPCVTLYHWDLPQVLEDKY--------GGWL---------------SRQIIEDFEHYAFTCFQEFGDR 178 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~--------gg~~---------------~~~~~~~f~~ya~~~~~~~gd~ 178 (411)
+++|+.+++-||+|++--+---.|..|..-+ +.|. .|-+.+-=..|-+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999888777898887532 2232 1223334445566677889963
Q ss_pred ceEE--EEecCC
Q 015181 179 VKYW--ITFNEP 188 (411)
Q Consensus 179 v~~w--~t~NEp 188 (411)
-..+ -||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 3333 488884
No 54
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=73.03 E-value=8 Score=42.33 Aligned_cols=55 Identities=29% Similarity=0.506 Sum_probs=40.3
Q ss_pred HHHHHHcCCCEEEE----cccCCccccC-CC---------------C--CCCh---hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 85 IDLMKDLGMDAYRF----SISWPRIFPN-GT---------------G--EPNP---EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 85 ~~l~~~lG~~~~R~----si~W~ri~p~-g~---------------g--~~n~---~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
|+.+|+||++++.+ ++.+.+...+ |. | ..+. ..+.=+++||++|+++||++|+++
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 4555555532 10 1 1122 247778999999999999999986
No 55
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=71.96 E-value=19 Score=35.55 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=63.9
Q ss_pred cccHHHHHHHHHcCCCEEEEcccC-------CccccCC---CCCC-ChhHHHHHHHHHHHHHHcCCeEEEEc----CC--
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISW-------PRIFPNG---TGEP-NPEGISYYNSLIDALLEKGIQPCVTL----YH-- 141 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W-------~ri~p~g---~g~~-n~~~~~~y~~~i~~l~~~gi~p~vtl----~h-- 141 (411)
...++-++.++++|+|++=+.+.+ |.++|.. .|.. ...|.+....+|++++++||++..-+ -.
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 345677899999999987665543 3344421 1111 11256778899999999999977543 10
Q ss_pred -----CCCchHHHHh-------h----CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 015181 142 -----WDLPQVLEDK-------Y----GG--WL---SRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 142 -----~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~~g 176 (411)
-..|.|+..+ + ++ |+ +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1245664311 1 22 44 46888999999999999996
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=71.71 E-value=29 Score=38.40 Aligned_cols=91 Identities=12% Similarity=0.137 Sum_probs=57.6
Q ss_pred ccHHHH-HHHHHcCCCEEEEcccCC---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--CC
Q 015181 80 RFKSDI-DLMKDLGMDAYRFSISWP---------------RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--YH 141 (411)
Q Consensus 80 ~~~eD~-~l~~~lG~~~~R~si~W~---------------ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--~h 141 (411)
-..+.+ ..+|+||++++=+.=-.. .|.|. -|. .+=++++|++|+++||++|+++ .|
T Consensus 266 ~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~-~Gt-----~~dfk~lV~~~H~~Gi~VilD~V~NH 339 (726)
T PRK05402 266 ELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSR-FGT-----PDDFRYFVDACHQAGIGVILDWVPAH 339 (726)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 334453 888999999998764221 12222 222 3446899999999999999995 45
Q ss_pred CCCc-----------hHHHH-----hhCC-------CCChhhHHHHHHHHHHHHHHhC
Q 015181 142 WDLP-----------QVLED-----KYGG-------WLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 142 ~~~P-----------~~l~~-----~~gg-------~~~~~~~~~f~~ya~~~~~~~g 176 (411)
+... .+... .+.. +.++++.+.+.+-++.-+++||
T Consensus 340 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 340 FPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5211 11000 0111 3467888888888888888876
No 57
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=71.61 E-value=21 Score=34.93 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=53.7
Q ss_pred HHHHHcCCCEEEEccc--CCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHH
Q 015181 86 DLMKDLGMDAYRFSIS--WPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIED 163 (411)
Q Consensus 86 ~l~~~lG~~~~R~si~--W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~ 163 (411)
+.+++.|++++-+++. -....|.-.|............-|..|+++|++++|.+--+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677899999887753 2333332111111011234467899999999999999833221100 013456788
Q ss_pred HHHHHHHHHHHhC-Ccce
Q 015181 164 FEHYAFTCFQEFG-DRVK 180 (411)
Q Consensus 164 f~~ya~~~~~~~g-d~v~ 180 (411)
|++....+.++|+ |.|+
T Consensus 92 ~~~a~~~~i~~y~~dgiD 109 (294)
T cd06543 92 LAAAYQKVIDAYGLTHLD 109 (294)
T ss_pred HHHHHHHHHHHhCCCeEE
Confidence 8888888889997 3444
No 58
>PLN02784 alpha-amylase
Probab=71.10 E-value=10 Score=42.38 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=48.2
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCC-----CChh--HHHHHHHHHHHHHHcCCeEEEEc
Q 015181 76 DQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGE-----PNPE--GISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 76 d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~-----~n~~--~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.+|....+.++.+++||++++=++=.-....+.|-.. +|.. ..+=++.+|++|+++||++|+++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4788899999999999999999887655554444111 1211 23557899999999999999985
No 59
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.02 E-value=31 Score=36.77 Aligned_cols=92 Identities=20% Similarity=0.371 Sum_probs=56.9
Q ss_pred ccccHHHHHHHHHcCCCEEEEccc--------C-------CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--C
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSIS--------W-------PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--Y 140 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~--------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--~ 140 (411)
+.-..+-++.+|+||++++-+.=- | -.+.|. -| ..+=+++||++|+++||++|+++ .
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G-----~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YG-----GPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cC-----CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 444556689999999999987621 1 111111 12 23457899999999999999985 3
Q ss_pred CCC---------CchHHHHhh-CCC------CCh---hhHHHHHHHHHHHHHHhC
Q 015181 141 HWD---------LPQVLEDKY-GGW------LSR---QIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 141 h~~---------~P~~l~~~~-gg~------~~~---~~~~~f~~ya~~~~~~~g 176 (411)
|.. -| |+...+ .+| .++ .+.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 542 12 222111 233 244 666777777777777665
No 60
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=69.59 E-value=14 Score=35.75 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=62.3
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCCh
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
+-+.|++++++.|++.+++.++=|...-+- -+.--.+.++...++++.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 446799999999999999998655443331 2333466788899999999999999999998776553 1
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 015181 159 QIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 159 ~~~~~f~~ya~~~~~~~g 176 (411)
...+.+.++++.+.+ .|
T Consensus 144 ~~~~~~~~~~~~~~~-~G 160 (280)
T cd07945 144 DSPDYVFQLVDFLSD-LP 160 (280)
T ss_pred CCHHHHHHHHHHHHH-cC
Confidence 224677777777654 44
No 61
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=69.34 E-value=18 Score=30.94 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=38.6
Q ss_pred HHHHHHHHcCCCEEEEccc------C--CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 83 SDIDLMKDLGMDAYRFSIS------W--PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~------W--~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
+=++.+|++|++++-+-.. | +++.+. .+..+ -+.+.++|++|+++||++++=+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~---hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR---HPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC---CCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 3368999999999999332 2 233222 22333 47889999999999999998664
No 62
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=69.07 E-value=2.9 Score=32.91 Aligned_cols=19 Identities=37% Similarity=0.747 Sum_probs=14.2
Q ss_pred HHHHhCC--cceEEEEecC-Cc
Q 015181 171 CFQEFGD--RVKYWITFNE-PH 189 (411)
Q Consensus 171 ~~~~~gd--~v~~w~t~NE-p~ 189 (411)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4677885 7999999999 76
No 63
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=67.72 E-value=11 Score=39.46 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=43.4
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCcc--------ccCC---------CCCCChh--HHHHHHHHHHHHHHcCCeEE
Q 015181 76 DQYHRFKSDIDLMKDLGMDAYRFSISWPRI--------FPNG---------TGEPNPE--GISYYNSLIDALLEKGIQPC 136 (411)
Q Consensus 76 d~y~~~~eD~~l~~~lG~~~~R~si~W~ri--------~p~g---------~g~~n~~--~~~~y~~~i~~l~~~gi~p~ 136 (411)
+.|.-..+-++.+++||++++=++=...-. .|.- .|.+|.. ..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 345556777999999999999888644332 1110 0012211 24457899999999999999
Q ss_pred EEc
Q 015181 137 VTL 139 (411)
Q Consensus 137 vtl 139 (411)
+++
T Consensus 99 ~D~ 101 (479)
T PRK09441 99 ADV 101 (479)
T ss_pred EEE
Confidence 986
No 64
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.58 E-value=47 Score=33.02 Aligned_cols=87 Identities=14% Similarity=0.141 Sum_probs=63.2
Q ss_pred CCCcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q 015181 71 ADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLED 150 (411)
Q Consensus 71 ~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~ 150 (411)
+=+|.=||+ |+..+. ..+.|+..+|+. +|.+-. -+..+.+++.++++|+-.=+...|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~-a~~~g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAAL-AMAKGVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHH-HHHhccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 335666775 444433 346799999973 666643 367799999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHHH
Q 015181 151 KYGGWLSRQIIEDFEHYAFTC 171 (411)
Q Consensus 151 ~~gg~~~~~~~~~f~~ya~~~ 171 (411)
+||+-..+..++-=.++++.+
T Consensus 140 kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHH
Confidence 987644445555555666553
No 65
>PRK03705 glycogen debranching enzyme; Provisional
Probab=67.26 E-value=13 Score=40.49 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=36.7
Q ss_pred HHHHHHcCCCEEEEccc-----------------C-------CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 85 IDLMKDLGMDAYRFSIS-----------------W-------PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~-----------------W-------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
++.+|+||++++-+.=- | -.+.|. -|.-....++=+++||++|+++||++|+++
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 89999999999976521 1 112222 121111235568999999999999999985
No 66
>PRK12313 glycogen branching enzyme; Provisional
Probab=66.79 E-value=42 Score=36.50 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=59.0
Q ss_pred ccccHHH-HHHHHHcCCCEEEEcccCC---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--
Q 015181 78 YHRFKSD-IDLMKDLGMDAYRFSISWP---------------RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL-- 139 (411)
Q Consensus 78 y~~~~eD-~~l~~~lG~~~~R~si~W~---------------ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl-- 139 (411)
|.-..+. ++.+|+||++++=+.=-.. .|.|. -|. .+=++++|++|+++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YGT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CCC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 3444556 4999999999998653221 12222 222 3446899999999999999995
Q ss_pred CCCCCch----HHH--------H---h-hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015181 140 YHWDLPQ----VLE--------D---K-YGGW-------LSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 140 ~h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~~g 176 (411)
.|+.... ++. + . +..| .++++.+.+.+-++.-+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4543111 110 0 0 0123 367888888888888888886
No 67
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=66.50 E-value=16 Score=36.70 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=58.1
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
-++.++.|+++|++. +||.-..+-++- -|... ..+-+.+.|+.+++.|++ +-+++. +++|.
T Consensus 98 t~e~l~~l~~~G~~r--vsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------- 162 (374)
T PRK05799 98 TEEKLKILKSMGVNR--LSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------- 162 (374)
T ss_pred CHHHHHHHHHcCCCE--EEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC----------
Confidence 357899999999994 555444444331 23221 245567899999999997 445653 45553
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccc
Q 015181 157 SRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFT 192 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 192 (411)
++.+.|.+-.+.+.+.=-++|..+...-+|+...
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2345666666665543236676665555777543
No 68
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.29 E-value=22 Score=33.55 Aligned_cols=82 Identities=18% Similarity=0.054 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhh
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQI 160 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~ 160 (411)
+++++.+++.|++.+|++++-+...-.- .+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999876321110 011122346777899999999999999998543322 133
Q ss_pred HHHHHHHHHHHHHHhC
Q 015181 161 IEDFEHYAFTCFQEFG 176 (411)
Q Consensus 161 ~~~f~~ya~~~~~~~g 176 (411)
.+.+.++++.+. .+|
T Consensus 145 ~~~l~~~~~~~~-~~g 159 (265)
T cd03174 145 PEYVLEVAKALE-EAG 159 (265)
T ss_pred HHHHHHHHHHHH-HcC
Confidence 455666666654 344
No 69
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=63.78 E-value=23 Score=33.70 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.+|++.+.+.|++.+|+.++.+.+.-.. -+.-.+++++...++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999887664221 233345678888999999999999987665
No 70
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=63.48 E-value=21 Score=35.12 Aligned_cols=108 Identities=15% Similarity=0.203 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCC-EEEEccc--CCcccc-C-CCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCC
Q 015181 82 KSDIDLMKDLGMD-AYRFSIS--WPRIFP-N-GTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 82 ~eD~~l~~~lG~~-~~R~si~--W~ri~p-~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
++.+++|+++|++ .+=++++ =.++.- . ++| .+ .+-+.+.++.++++||.+.+.+. +.+|. ..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------LS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------CC
Confidence 6889999999998 4666652 222221 1 122 22 45667999999999999777764 34441 12
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccccccCCCCCC
Q 015181 157 SRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYDTGLQAP 203 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~P 203 (411)
..++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23667888888887765 45888877766677654444466676654
No 71
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=63.11 E-value=24 Score=35.61 Aligned_cols=61 Identities=20% Similarity=0.135 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
-.++|++.+.+.|++.+|+.++-|.+.-+. -+.-..+.++...+.++.+++.|+++.+++-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 358999999999999999998877664321 2323345678888999999999999988874
No 72
>PRK14705 glycogen branching enzyme; Provisional
Probab=62.79 E-value=40 Score=39.44 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=55.3
Q ss_pred HHHHHHcCCCEEEEcc--------cCCccccCCCCCCC--hhHHHHHHHHHHHHHHcCCeEEEEc--CCCCCchHHHHhh
Q 015181 85 IDLMKDLGMDAYRFSI--------SWPRIFPNGTGEPN--PEGISYYNSLIDALLEKGIQPCVTL--YHWDLPQVLEDKY 152 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si--------~W~ri~p~g~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtl--~h~~~P~~l~~~~ 152 (411)
++.+|+||++++-+.= +|- -.|.+--.++ ....+=++.+|++|+++||.+|+++ .|+..=.|....+
T Consensus 772 ldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~f 850 (1224)
T PRK14705 772 VDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQF 850 (1224)
T ss_pred HHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhc
Confidence 6899999999997652 231 1111100000 0123446899999999999999985 3552111111111
Q ss_pred ----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 015181 153 ----------------GG-------WLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 153 ----------------gg-------~~~~~~~~~f~~ya~~~~~~~g 176 (411)
.. +.++++.+.+.+=+..-+++|+
T Consensus 851 dg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 851 DGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred CCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11 3356777888888888889887
No 73
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=62.55 E-value=25 Score=35.31 Aligned_cols=85 Identities=12% Similarity=-0.020 Sum_probs=62.0
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCC-CCCchHHHHhhCCCCC
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYH-WDLPQVLEDKYGGWLS 157 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h-~~~P~~l~~~~gg~~~ 157 (411)
+-.+|++.+.+.|++.+.+.++=|...-+- -+.--++.++.+.++|+.++++|+++.+++.. |..|. .|-
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r-- 193 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP-- 193 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC--
Confidence 368999999999999999998766554332 23345678899999999999999999877753 55442 232
Q ss_pred hhhHHHHHHHHHHHHH
Q 015181 158 RQIIEDFEHYAFTCFQ 173 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~ 173 (411)
..++.+.++++.+.+
T Consensus 194 -~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 -VPPSKVAYVAKELYD 208 (347)
T ss_pred -CCHHHHHHHHHHHHH
Confidence 236677777777654
No 74
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=61.96 E-value=32 Score=35.97 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred cccccHHH-----HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q 015181 77 QYHRFKSD-----IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLP 145 (411)
Q Consensus 77 ~y~~~~eD-----~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P 145 (411)
.|..|.+| ++...+.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 46667888 899999999999999865542 334677788888888887777653335
No 75
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=61.61 E-value=59 Score=31.70 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=66.7
Q ss_pred cHHHHHHHHHcC--CCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC---CCchHHHHh----
Q 015181 81 FKSDIDLMKDLG--MDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW---DLPQVLEDK---- 151 (411)
Q Consensus 81 ~~eD~~l~~~lG--~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~---~~P~~l~~~---- 151 (411)
..+-++.+++.| ++++=+.+.|.+-.-.+.=.+|++.+---..||++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 456688899999 55677888888532211224454444445799999999999988876533 223211110
Q ss_pred ---------h--------CC---CCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCc
Q 015181 152 ---------Y--------GG---WLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPH 189 (411)
Q Consensus 152 ---------~--------gg---~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 189 (411)
+ .+ +.||+..+.|.+..+.+.+ .|= --+|.=+||+.
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~Gi-d~~~~D~~e~~ 161 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MGV-DCFKTDFGERI 161 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hCC-cEEecCCCCCC
Confidence 0 11 5688888888877776554 442 23556688873
No 76
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=61.53 E-value=15 Score=39.13 Aligned_cols=62 Identities=16% Similarity=0.317 Sum_probs=41.5
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCC-------CCCh--hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTG-------EPNP--EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
-+.-..+-++.+++||++++=++=-...-.-. .| .+|+ ...+=++.+|++++++||++|+++
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34446677899999999999876433321110 01 1111 134557899999999999999986
No 77
>PRK09505 malS alpha-amylase; Reviewed
Probab=61.13 E-value=22 Score=38.99 Aligned_cols=59 Identities=20% Similarity=0.409 Sum_probs=40.8
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccc-----------cC-C-CC-------CCCh--hHHHHHHHHHHHHHHcCCeEEEE
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIF-----------PN-G-TG-------EPNP--EGISYYNSLIDALLEKGIQPCVT 138 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~-----------p~-g-~g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vt 138 (411)
..+-++.+++||++++=++=-...+. |. + -| .+|+ ...+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999999885444431 10 0 01 1222 23456799999999999999998
Q ss_pred c
Q 015181 139 L 139 (411)
Q Consensus 139 l 139 (411)
+
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 78
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.27 E-value=84 Score=31.27 Aligned_cols=85 Identities=20% Similarity=0.230 Sum_probs=61.9
Q ss_pred CcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhh
Q 015181 73 TAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKY 152 (411)
Q Consensus 73 ~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~ 152 (411)
+|-=||+ |+ =.....+.|+..+|+. +|.+-.+ +....+++.++++|+-.=+...|-.+..-+.++|
T Consensus 78 VaDiHf~-~r-la~~~~~~g~~k~RIN----------PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YR-LALEAAECGVDKVRIN----------PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HH-HHHHhhhcCcceEEEC----------CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3444666 33 2344457789999873 5666433 3778999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 015181 153 GGWLSRQIIEDFEHYAFTC 171 (411)
Q Consensus 153 gg~~~~~~~~~f~~ya~~~ 171 (411)
++-..+..++-=.++++.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8766555555555555553
No 79
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=60.06 E-value=76 Score=34.40 Aligned_cols=96 Identities=15% Similarity=0.177 Sum_probs=58.2
Q ss_pred cHHHH-HHHHHcCCCEEEEc-ccCCcccc-CCC---C--CCC--hhHHHHHHHHHHHHHHcCCeEEEEcC--CCCC----
Q 015181 81 FKSDI-DLMKDLGMDAYRFS-ISWPRIFP-NGT---G--EPN--PEGISYYNSLIDALLEKGIQPCVTLY--HWDL---- 144 (411)
Q Consensus 81 ~~eD~-~l~~~lG~~~~R~s-i~W~ri~p-~g~---g--~~n--~~~~~~y~~~i~~l~~~gi~p~vtl~--h~~~---- 144 (411)
..+.+ +.+|+||++++=+. |....-.. -|- + .++ ....+=++++|++|+++||++|+++- |...
T Consensus 158 i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 158 LADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 34554 88999999999984 43321100 010 0 011 01133468999999999999999863 5421
Q ss_pred -------chHHHH-----hhCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015181 145 -------PQVLED-----KYGGW-------LSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 145 -------P~~l~~-----~~gg~-------~~~~~~~~f~~ya~~~~~~~g 176 (411)
|.+... .+..| .++++.+.+.+-++..+++|+
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 00112 357888899999999999887
No 80
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.90 E-value=16 Score=35.01 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=46.3
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
-.+|++.+.+.|++.+|+.++=|...-.. .+.=-++.++...+++..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 73 HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 36799999999999999988655432221 2222356788999999999999999999884
No 81
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=59.30 E-value=35 Score=36.86 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=35.0
Q ss_pred cccccHHH-----HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 77 QYHRFKSD-----IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 77 ~y~~~~eD-----~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
.|.+|.+| ++..++.|++.+|+..+.+.+ +-....|+.++++|....+++.
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~ 145 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLS 145 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 46666666 999999999999999754443 2334566667777776554444
No 82
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=58.64 E-value=1.9e+02 Score=28.52 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=33.4
Q ss_pred CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 015181 103 PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW 142 (411)
Q Consensus 103 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~ 142 (411)
++..|...+-++.+-+..++++.+.++++|-+.++=|+|-
T Consensus 61 ~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 61 GRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred cCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 3445554566788899999999999999999999999994
No 83
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.61 E-value=62 Score=31.62 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=70.6
Q ss_pred cHHHHHHHHHcCC--CEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCC---chHHH------
Q 015181 81 FKSDIDLMKDLGM--DAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDL---PQVLE------ 149 (411)
Q Consensus 81 ~~eD~~l~~~lG~--~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~---P~~l~------ 149 (411)
..+-++.+++.|+ +++=+.+.|..-. |.=.+|.+-+---.+|++.|+++|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 3455788888885 5777777886431 222445444444579999999999999887643211 11111
Q ss_pred ---HhhC----------C------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCc
Q 015181 150 ---DKYG----------G------WLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPH 189 (411)
Q Consensus 150 ---~~~g----------g------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 189 (411)
+..| | +.||+..+.|.+..+.+....|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 56899999999999888877764 35678899997
No 84
>PRK10785 maltodextrin glucosidase; Provisional
Probab=58.40 E-value=23 Score=38.19 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=38.2
Q ss_pred cHHHHHHHHHcCCCEEEEcccCC-------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWP-------------RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~-------------ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
..+-++.+++||++++=++=-.. +|-|. -| ..+=++++|++++++||++|+++
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 34568999999999998874222 22222 11 23457899999999999999986
No 85
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=58.21 E-value=42 Score=32.22 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhH
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQII 161 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~ 161 (411)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+.+.+-. + -..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CCH
Confidence 5789999999999999987433 356678999999999999999986421 1 235
Q ss_pred HHHHHHHHHHHHHhC
Q 015181 162 EDFEHYAFTCFQEFG 176 (411)
Q Consensus 162 ~~f~~ya~~~~~~~g 176 (411)
+.+.++++.+.+ +|
T Consensus 138 ~~~~~~~~~~~~-~g 151 (266)
T cd07944 138 EELLELLELVNE-IK 151 (266)
T ss_pred HHHHHHHHHHHh-CC
Confidence 667777777654 44
No 86
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=56.60 E-value=33 Score=36.62 Aligned_cols=62 Identities=18% Similarity=0.401 Sum_probs=42.4
Q ss_pred ccccccHHHHHHHHHcCCCEEEEcccCCccccCCC-C-------CCCh--hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 76 DQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGT-G-------EPNP--EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 76 d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~-g-------~~n~--~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.-+.-..+.++.+++||++++=++=-+.. |... | .+|+ ...+=++++|++++++||++|+++
T Consensus 30 Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 30 GDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred cCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 33555668899999999999988654321 2101 1 1111 134557899999999999999986
No 87
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=56.05 E-value=19 Score=42.23 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=37.5
Q ss_pred HHHHHHHHcCCCEEEEcccCCccc-----cCC-C---C-------CCCh----hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 83 SDIDLMKDLGMDAYRFSISWPRIF-----PNG-T---G-------EPNP----EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~W~ri~-----p~g-~---g-------~~n~----~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
+.|+.+|+||++++=+.=-..... +.| . | .++. ...+=+++||++|+++||++|+++
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 568899999999998763222111 000 0 0 1111 134567999999999999999985
No 88
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=55.37 E-value=51 Score=33.00 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=43.6
Q ss_pred HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 85 IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
++.++++|.+++-+-+-|. |+.+..+|..-+++..++.++|++.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 6779999999999999887 542334577888999999999999999988864
No 89
>PRK14706 glycogen branching enzyme; Provisional
Probab=54.80 E-value=56 Score=35.64 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=52.9
Q ss_pred HHHHHcCCCEEEEcc--cCCccccCCC---C--CCCh--hHHHHHHHHHHHHHHcCCeEEEEc--CCCC-----------
Q 015181 86 DLMKDLGMDAYRFSI--SWPRIFPNGT---G--EPNP--EGISYYNSLIDALLEKGIQPCVTL--YHWD----------- 143 (411)
Q Consensus 86 ~l~~~lG~~~~R~si--~W~ri~p~g~---g--~~n~--~~~~~y~~~i~~l~~~gi~p~vtl--~h~~----------- 143 (411)
+.+|+||++++-+.= +-+--.--|- + .++. ...+=++.+|++|+++||++|+++ .|+.
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg 254 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDG 254 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCC
Confidence 679999999988652 1100000010 0 0110 123446899999999999999985 3532
Q ss_pred CchH-HHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 015181 144 LPQV-LEDKYGG----W-------LSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 144 ~P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~g 176 (411)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 255 ~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 255 GPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 0000011 2 257788888888888888887
No 90
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.56 E-value=38 Score=32.65 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=40.2
Q ss_pred cHHHHHHHHHcCCCEEEEcccCC-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWP-RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
-+|.++.|+++|++.+-++++-+ ++.+.-.+.. .++.+.+.++.++++||.+.+++
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 47899999999999999998821 1233211112 35667899999999999866543
No 91
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.19 E-value=44 Score=32.51 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCC-CCCchHHHHhhCCCCC
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYH-WDLPQVLEDKYGGWLS 157 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h-~~~P~~l~~~~gg~~~ 157 (411)
+-.+|+++..+.|++.+|+.++=+...-.. -+.-.++.++...++|+.++++|+++..++.. |..| +.|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~- 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEV- 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCC-
Confidence 468999999999999999998655432211 23334567888999999999999999877763 4544 23333
Q ss_pred hhhHHHHHHHHHHHHHHhC
Q 015181 158 RQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~g 176 (411)
..+.+.++++.+.+ .|
T Consensus 153 --~~~~~~~~~~~~~~-~G 168 (287)
T PRK05692 153 --PPEAVADVAERLFA-LG 168 (287)
T ss_pred --CHHHHHHHHHHHHH-cC
Confidence 36777888888765 44
No 92
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.88 E-value=61 Score=31.69 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=44.9
Q ss_pred cHHHHHHHHHcCCCEEEEcc----cCCccccC---CCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHH
Q 015181 81 FKSDIDLMKDLGMDAYRFSI----SWPRIFPN---GTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLE 149 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si----~W~ri~p~---g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~ 149 (411)
.++=|++|+.+|+|.+-+=+ .++. .|+ +.|.+..+.+ +++++.++++||++|..+ ++|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~ei---~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEEI---REIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHHH---HHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67789999999999887744 2322 222 1466776555 799999999999999876 5665543
No 93
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=53.71 E-value=53 Score=30.66 Aligned_cols=77 Identities=17% Similarity=0.390 Sum_probs=50.7
Q ss_pred ccccccHHHHHHHHHcCCCEEEE----------------------cccCCccccCCCCCCChhHHHHHHHHHHHHHHcCC
Q 015181 76 DQYHRFKSDIDLMKDLGMDAYRF----------------------SISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGI 133 (411)
Q Consensus 76 d~y~~~~eD~~l~~~lG~~~~R~----------------------si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi 133 (411)
+---.-+.-++++++||.+++.| ++ | +||. |-+| ++.+..++..+++.|+
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGV 203 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCC
Confidence 33445678899999999999885 33 3 5777 5577 6778999999999999
Q ss_pred eEEEEcCCCCCchHHHHhhCCCCChhhHHHH
Q 015181 134 QPCVTLYHWDLPQVLEDKYGGWLSRQIIEDF 164 (411)
Q Consensus 134 ~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f 164 (411)
+-++ .|.-. .+.|+--|-+.++-+...
T Consensus 204 ~kvi--PHIYs--siIDk~tG~TrpedV~~l 230 (236)
T TIGR03581 204 EKVI--PHVYS--SIIDKETGNTRVEDVKQL 230 (236)
T ss_pred Ceec--cccce--eccccccCCCCHHHHHHH
Confidence 8663 23110 112232566666554433
No 94
>PRK09936 hypothetical protein; Provisional
Probab=53.33 E-value=1.1e+02 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.374 Sum_probs=45.4
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLED 150 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~ 150 (411)
|++=++.++.+|+++. =+.|++.--+.-|.-+ .+.-+.++.+.++||+++|.|+ +| |.|.+.
T Consensus 40 Wq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~~----g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 40 WQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQR----GWLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHcCCcEE--EEEeeeccCCCcccch----HHHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 5667899999999986 3578888211112222 4568999999999999999997 66 666654
No 95
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.02 E-value=70 Score=31.85 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCc--------hHHHH-h------------h--------C---CCCChhhHHHHHHHHH
Q 015181 122 NSLIDALLEKGIQPCVTLYHWDLP--------QVLED-K------------Y--------G---GWLSRQIIEDFEHYAF 169 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~~~P--------~~l~~-~------------~--------g---g~~~~~~~~~f~~ya~ 169 (411)
++||++|+++|++.++.+.-+-.+ ..-+. + + + .+.|++..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999998887554332 11110 0 0 1 2568888888888777
Q ss_pred HHHHHhCCcceEEEEecCCcc
Q 015181 170 TCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 170 ~~~~~~gd~v~~w~t~NEp~~ 190 (411)
.+...+|- --+|.=+|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 76666553 367889999974
No 96
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.96 E-value=34 Score=35.72 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=42.1
Q ss_pred cccccHHH-----HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCch
Q 015181 77 QYHRFKSD-----IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQ 146 (411)
Q Consensus 77 ~y~~~~eD-----~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~ 146 (411)
.|..|.+| +++.++.|++.+|+.-. .|+ ++-....|+.+++.|....+++.+=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~-----------lnd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDA-----------LND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEccc-----------CCC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 47788889 99999999999998642 221 34446777888888888777777755553
No 97
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=52.74 E-value=46 Score=33.74 Aligned_cols=58 Identities=22% Similarity=0.229 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
++|++.+.+.|++.+|+.++-+.+.-+- -+.--++.++...+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999776653221 233345678888999999999999988874
No 98
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.50 E-value=48 Score=31.96 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=60.7
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcC-CCCCchHHHHhhCCCCCh
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLY-HWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~-h~~~P~~l~~~~gg~~~~ 158 (411)
-.+|++...+.|++.+++.++=|...-.- -+.--.+.++...+.++.++++|+++.+++. .|+.|. .+ +
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~---~ 145 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EG---E 145 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CC---C
Confidence 47899999999999999998655432221 2222356788899999999999999998876 355541 23 2
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 015181 159 QIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 159 ~~~~~f~~ya~~~~~~~g 176 (411)
...+.+.++++.+.+ .|
T Consensus 146 ~~~~~~~~~~~~~~~-~G 162 (274)
T cd07938 146 VPPERVAEVAERLLD-LG 162 (274)
T ss_pred CCHHHHHHHHHHHHH-cC
Confidence 246677788887654 44
No 99
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=51.46 E-value=62 Score=32.22 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCeEEEEcCCC-CCchHHHHh--hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccc
Q 015181 122 NSLIDALLEKGIQPCVTLYHW-DLPQVLEDK--YGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQ 194 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~-~~P~~l~~~--~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~ 194 (411)
++|+++|++.|++.++.+.-+ ..-..+... +-.|.||+..+.|.+..+.+.+ .|= .-+|+=+|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcccccCC
Confidence 689999999999988766421 100000000 1136788888877666554432 332 3488999999987653
No 100
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.98 E-value=46 Score=33.49 Aligned_cols=81 Identities=15% Similarity=0.075 Sum_probs=56.1
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChh
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQ 159 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~ 159 (411)
-.+|++.+.+.|++.+|+.++-|.+.-+- -+.-..+.++...+.|+.++++|+++.+++.. .+..
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~--- 139 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRA--- 139 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCC---
Confidence 38999999999999999999877543221 12223456888899999999999998866531 2222
Q ss_pred hHHHHHHHHHHHHHHhC
Q 015181 160 IIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 160 ~~~~f~~ya~~~~~~~g 176 (411)
..+.+.++++.+.+ +|
T Consensus 140 ~~~~l~~~~~~~~~-~G 155 (365)
T TIGR02660 140 DPDFLVELAEVAAE-AG 155 (365)
T ss_pred CHHHHHHHHHHHHH-cC
Confidence 24566666666543 44
No 101
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=50.55 E-value=1.1e+02 Score=29.55 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=49.2
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhh
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQI 160 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~ 160 (411)
-++|++...+.|++.+|+++..+. ++.-.+.++.++++|+++.+++.--+ + .+-.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 478999999999999999875544 34557899999999999887663111 1 2233
Q ss_pred HHHHHHHHHHHHH
Q 015181 161 IEDFEHYAFTCFQ 173 (411)
Q Consensus 161 ~~~f~~ya~~~~~ 173 (411)
.+.+.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (275)
T cd07937 148 LEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777654
No 102
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=49.86 E-value=69 Score=33.23 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=65.0
Q ss_pred cHHHHHHHHHcCCCEEEEcc-cCC-ccccCCCCCCChhHHHHHHHHHHHHHHcC-CeEEEEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSI-SWP-RIFPNGTGEPNPEGISYYNSLIDALLEKG-IQPCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si-~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-+|.+++|+++|+|-+-+++ +-+ ++... -|+.. ..+-..+.|+.+++.| +.+.++|. +++|..
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPgq---------- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPGQ---------- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCCC----------
Confidence 36789999999999888777 332 22222 23322 1244568899999999 67777775 566631
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccccccCCCCC
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYDTGLQA 202 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~~ 202 (411)
+.+.|.+=.+.+.+-=-++|..+...-||+......+..|..+
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2344554455544433367888888888886443334445443
No 103
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=49.69 E-value=71 Score=33.26 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLP 145 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P 145 (411)
++|++.+.+.|++.+|+.++-+.+. -....|+.++++|+++.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998655541 14568899999999888777654445
No 104
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.45 E-value=1.1e+02 Score=30.61 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=54.3
Q ss_pred HHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHH
Q 015181 89 KDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYA 168 (411)
Q Consensus 89 ~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 168 (411)
.+.|+..+|+. +|.+-. --+..+.+++.++++|+-.=+...|-.++..+.++||+-..+..++-=.+++
T Consensus 98 ~~~G~~~iRIN----------PGNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~ 166 (360)
T PRK00366 98 AEAGADALRIN----------PGNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHA 166 (360)
T ss_pred HHhCCCEEEEC----------CCCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHH
Confidence 37799999763 566621 0256789999999999999999999999999999986534445556556666
Q ss_pred HHH
Q 015181 169 FTC 171 (411)
Q Consensus 169 ~~~ 171 (411)
+.+
T Consensus 167 ~~l 169 (360)
T PRK00366 167 KIL 169 (360)
T ss_pred HHH
Confidence 553
No 105
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=49.23 E-value=42 Score=37.55 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCcccc--CCC-----CCCChh--HHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFP--NGT-----GEPNPE--GISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p--~g~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
....+-+..+++||++++=+|=-+.-.-. .|- ..+|++ +.+=+++++++++++||++|+++
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34678899999999999987754432110 010 112211 34557899999999999999986
No 106
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=48.69 E-value=50 Score=35.13 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=39.7
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccc-cCCC-----CCCChh--HHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIF-PNGT-----GEPNPE--GISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~-p~g~-----g~~n~~--~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.-..+-++.+++||++++=++=-.+.-. ..|- -.+|+. ..+=++++|++++++||++|+++
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3355668999999999997763222110 0010 012221 24557899999999999999986
No 107
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=48.35 E-value=76 Score=32.33 Aligned_cols=50 Identities=18% Similarity=0.359 Sum_probs=40.2
Q ss_pred ccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 80 RFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.|++||++++++||+.|=+.|- . ...... +....+++++.+.|.+.++.+
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~-~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------S-SDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------c-CCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 4899999999999999999886 1 223443 455789999999999999886
No 108
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=47.45 E-value=93 Score=30.82 Aligned_cols=57 Identities=18% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCC
Q 015181 85 IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDL 144 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~ 144 (411)
.+.+|++|.+++.|=+=|. |+++..+|..-.++.+++.++|++.+|--++-+..++.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~ 167 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDE 167 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccC
Confidence 6889999999999998887 56455688888999999999999999998888766553
No 109
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=47.08 E-value=59 Score=36.13 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=55.0
Q ss_pred HHHHHHHcCCCEEEEcccCCc---------------cccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC--CCCC--
Q 015181 84 DIDLMKDLGMDAYRFSISWPR---------------IFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY--HWDL-- 144 (411)
Q Consensus 84 D~~l~~~lG~~~~R~si~W~r---------------i~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~--h~~~-- 144 (411)
-+..+|+||++++-+.=-... +.|. -|. .+=++++|++|+++||++|+++- |+.-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~-~Gt-----p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~ 329 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSR-SGT-----PEDLKYLIDKAHSLGLRVLMDVVHSHASKNT 329 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccc-cCC-----HHHHHHHHHHHHHCCCEEEEEeccccccccc
Confidence 489999999999987743221 1111 122 24468999999999999999874 3211
Q ss_pred -----------chHHHHhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 015181 145 -----------PQVLEDKYGG----W-------LSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 145 -----------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~g 176 (411)
+.++.....| | .++++...+.+-++.-+++|+
T Consensus 330 ~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 330 LDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222210011 2 245677777777888888875
No 110
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=46.86 E-value=60 Score=30.41 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=41.6
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCccccCC--CCCCChhHHHHHHHHHHHHHHcCCeEEEEc-CCCCCc
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWPRIFPNG--TGEPNPEGISYYNSLIDALLEKGIQPCVTL-YHWDLP 145 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl-~h~~~P 145 (411)
-+.+++-+++++++|.+.+|+...+. |.. ........++..+++.+.+.+.||...+=. .+++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 45667778999999999998654321 210 011122344667888888999999988743 444444
No 111
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=46.32 E-value=1.5e+02 Score=29.21 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCC-----chHHHHh-------------h------C-----CCCChhhHHHHHHHHHHH
Q 015181 121 YNSLIDALLEKGIQPCVTLYHWDL-----PQVLEDK-------------Y------G-----GWLSRQIIEDFEHYAFTC 171 (411)
Q Consensus 121 y~~~i~~l~~~gi~p~vtl~h~~~-----P~~l~~~-------------~------g-----g~~~~~~~~~f~~ya~~~ 171 (411)
-.+||+.|+++|++.++.+.-+-. |...+.. + | .|.||+..+.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 368999999999998877643321 2221110 0 1 267889999998888776
Q ss_pred HHHhCCcceEEEEecCCccc
Q 015181 172 FQEFGDRVKYWITFNEPHGF 191 (411)
Q Consensus 172 ~~~~gd~v~~w~t~NEp~~~ 191 (411)
....|- .-+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655543 3578999999643
No 112
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.27 E-value=1e+02 Score=30.62 Aligned_cols=90 Identities=20% Similarity=0.249 Sum_probs=62.7
Q ss_pred HHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHH
Q 015181 84 DIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIED 163 (411)
Q Consensus 84 D~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~ 163 (411)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++.+|--++-+..++.+. .++ .+++....
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHhh
Confidence 57899999999999988887 5545568888899999999999999999999887665332 111 22332222
Q ss_pred HHHHHHHHHHHhCC---cceEE
Q 015181 164 FEHYAFTCFQEFGD---RVKYW 182 (411)
Q Consensus 164 f~~ya~~~~~~~gd---~v~~w 182 (411)
--+.+-..++.|++ .|+.|
T Consensus 183 kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEE
Confidence 22334445666765 45555
No 113
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=45.41 E-value=1.7e+02 Score=28.74 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=61.8
Q ss_pred HHHHHHHHcCC--CEEEEcccCCccccC-C-CC--CCChhHHHHHHHHHHHHHHcCCeEEEEcCCC---CCchHHHHh--
Q 015181 83 SDIDLMKDLGM--DAYRFSISWPRIFPN-G-TG--EPNPEGISYYNSLIDALLEKGIQPCVTLYHW---DLPQVLEDK-- 151 (411)
Q Consensus 83 eD~~l~~~lG~--~~~R~si~W~ri~p~-g-~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~---~~P~~l~~~-- 151 (411)
+-++.+++.|+ +++=+.+.|...... + .| .+|.+-.---++||+.|+++|++.++.++-+ +.|..-+-+
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhC
Confidence 34555666554 466666667443221 0 11 2233333334689999999999999887644 333321100
Q ss_pred -h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCccc
Q 015181 152 -Y-------------------G---GWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGF 191 (411)
Q Consensus 152 -~-------------------g---g~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 191 (411)
+ + .+.||+..+.|.+..+.+ ...|= --+|.=+|||..+
T Consensus 108 g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~ 168 (317)
T cd06598 108 GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVH 168 (317)
T ss_pred CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCcccc
Confidence 0 1 255888888888877665 33332 2467899999754
No 114
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=45.32 E-value=1.6e+02 Score=28.89 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHHHHHcCCeEEEEcCCCC---CchHHHHh---h-----------------CC---CCChhhHHHHHHH
Q 015181 114 NPEGISYYNSLIDALLEKGIQPCVTLYHWD---LPQVLEDK---Y-----------------GG---WLSRQIIEDFEHY 167 (411)
Q Consensus 114 n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~---~P~~l~~~---~-----------------gg---~~~~~~~~~f~~y 167 (411)
|.+-+---.+||+.|+++|+++++.+.-+- .+.+-+-+ | .+ |.||+..+.|.+.
T Consensus 61 d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 140 (319)
T cd06591 61 DPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQ 140 (319)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHH
Confidence 433333347999999999999988764321 12111000 0 11 5688888877766
Q ss_pred HHHHHHHhCCcceEEEEecCCcccc
Q 015181 168 AFTCFQEFGDRVKYWITFNEPHGFT 192 (411)
Q Consensus 168 a~~~~~~~gd~v~~w~t~NEp~~~~ 192 (411)
.+..+...|= --+|+=+|||..+.
T Consensus 141 ~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 141 LKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHhhcCCC-cEEEecCCCCCccC
Confidence 5544444443 46789999998653
No 115
>PRK12568 glycogen branching enzyme; Provisional
Probab=45.20 E-value=43 Score=37.04 Aligned_cols=98 Identities=16% Similarity=0.271 Sum_probs=57.5
Q ss_pred ccccHHH-HHHHHHcCCCEEEEcc--------cCCccccCCCCCCC--hhHHHHHHHHHHHHHHcCCeEEEEcC--CCCC
Q 015181 78 YHRFKSD-IDLMKDLGMDAYRFSI--------SWPRIFPNGTGEPN--PEGISYYNSLIDALLEKGIQPCVTLY--HWDL 144 (411)
Q Consensus 78 y~~~~eD-~~l~~~lG~~~~R~si--------~W~ri~p~g~g~~n--~~~~~~y~~~i~~l~~~gi~p~vtl~--h~~~ 144 (411)
|.-..+. +..+|+||++++-+.= +|- -.|.+--.++ ....+=++.+|++|+++||++|+++. |+.-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3333444 6899999999997652 231 1111100000 11234578999999999999999863 4321
Q ss_pred c----------hHHH--H-h---hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 015181 145 P----------QVLE--D-K---YGG-------WLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 145 P----------~~l~--~-~---~gg-------~~~~~~~~~f~~ya~~~~~~~g 176 (411)
- .... + + +.. +.++++.+.+.+-++.-+++|+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 1 0000 0 0 011 3366777888888888888886
No 116
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=45.19 E-value=82 Score=33.49 Aligned_cols=106 Identities=18% Similarity=0.209 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCCCEEEEccc--CCccccC-CCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCCh
Q 015181 82 KSDIDLMKDLGMDAYRFSIS--WPRIFPN-GTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~--W~ri~p~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
++.+++|+++|++.+-+++. -.++.-. +.| .+ .+-..+.++.+++.|+++.+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-ht---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-HT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-CC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999997777773 3333322 122 12 34446888899999998777774 56652
Q ss_pred hhHHHHHHHHHHHHH--HhC-CcceEEEEecCCcccccccccCCCCCCC
Q 015181 159 QIIEDFEHYAFTCFQ--EFG-DRVKYWITFNEPHGFTLQGYDTGLQAPG 204 (411)
Q Consensus 159 ~~~~~f~~ya~~~~~--~~g-d~v~~w~t~NEp~~~~~~gy~~g~~~Pg 204 (411)
++.+.+.+=++.+++ .++ |.|+.+.+.=.|+.....-|..|.|.|-
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 224455665666665 354 6788777666666554444666777653
No 117
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.13 E-value=1.2e+02 Score=30.19 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCC-----chHHHHh-------------h--------C---CCCChhhHHHHHHHHHHHH
Q 015181 122 NSLIDALLEKGIQPCVTLYHWDL-----PQVLEDK-------------Y--------G---GWLSRQIIEDFEHYAFTCF 172 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~~~-----P~~l~~~-------------~--------g---g~~~~~~~~~f~~ya~~~~ 172 (411)
..||+.|+++|++.++.++-+-. |..-+.. | . .+.||+..+.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 68999999999999888765432 2211110 0 0 2568999999988888776
Q ss_pred HHhC-CcceEEEEecCCcccc
Q 015181 173 QEFG-DRVKYWITFNEPHGFT 192 (411)
Q Consensus 173 ~~~g-d~v~~w~t~NEp~~~~ 192 (411)
...+ .-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5433 2357889999998754
No 118
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.93 E-value=3.2e+02 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=34.5
Q ss_pred CCcccc---CCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 015181 102 WPRIFP---NGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW 142 (411)
Q Consensus 102 W~ri~p---~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~ 142 (411)
-.+..| ...+-++.+-+..++++.+.++++|-+.++=|+|-
T Consensus 62 ~~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~ 105 (338)
T cd04733 62 RHLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHP 105 (338)
T ss_pred ccccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCC
Confidence 346666 33577888899999999999999999999999993
No 119
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=44.80 E-value=77 Score=31.89 Aligned_cols=104 Identities=10% Similarity=0.087 Sum_probs=59.9
Q ss_pred cHHHHHHHHHcCCCEEEEccc-CC-ccccCCCCCCChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS-WP-RIFPNGTGEPNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~-W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-++.+++|+++|++.+-+++. -+ ++... -|... ..+-..+.++.+++.|+. +.++|. +++|.
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRTH--TPGRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 468899999999996666652 22 22222 12221 234567899999999998 666664 45552
Q ss_pred hhhHHHHHHHHHHHHHHhC-CcceEEEEecCCcccccccccCCCC
Q 015181 158 RQIIEDFEHYAFTCFQEFG-DRVKYWITFNEPHGFTLQGYDTGLQ 201 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~~~~~gy~~g~~ 201 (411)
++.+.|.+=.+.+.+ ++ +++..+...-||+.....-+..|.+
T Consensus 172 -qt~~~~~~tl~~~~~-l~~~~i~~y~l~~~~gT~l~~~~~~g~~ 214 (375)
T PRK05628 172 -ESDDDWRASLDAALE-AGVDHVSAYALIVEDGTALARRVRRGEL 214 (375)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEeeeeecCCCChHHHHhhcCCC
Confidence 224455555554443 44 5666665555776544333333433
No 120
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=44.43 E-value=1.2e+02 Score=30.18 Aligned_cols=55 Identities=20% Similarity=0.193 Sum_probs=41.4
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--CCCCCchHH
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--YHWDLPQVL 148 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--~h~~~P~~l 148 (411)
..+|++.+.+.|++.+|+....+.. +--.+.++.+++.|+++.+.+ .|...|..+
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 3689999999999999998754433 123689999999999988877 344444433
No 121
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=44.37 E-value=65 Score=32.23 Aligned_cols=92 Identities=14% Similarity=0.229 Sum_probs=55.0
Q ss_pred cHHHHHHHHHcCCCEEEEccc-CC-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEE-EEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS-WP-RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPC-VTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~-W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-++.++.|+++|++.+-+++. -+ ++... -|... ..+-+.+.|+.+++.|+.++ ++|. +++|.
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg----------- 163 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQH--SAKNIAPAIETALKSGIENISLDLM-YGLPL----------- 163 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEecc-CCCCC-----------
Confidence 368899999999996666662 32 33333 23321 24556789999999999754 5553 55553
Q ss_pred hhhHHHHHHHHHHHHHHhC-CcceEEEEecCCc
Q 015181 158 RQIIEDFEHYAFTCFQEFG-DRVKYWITFNEPH 189 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~ 189 (411)
++.+.+.+-.+.+.+ ++ +++..+...=||+
T Consensus 164 -qt~~~~~~~l~~~~~-l~~~~is~y~l~~~~g 194 (360)
T TIGR00539 164 -QTLNSLKEELKLAKE-LPINHLSAYALSVEPN 194 (360)
T ss_pred -CCHHHHHHHHHHHHc-cCCCEEEeecceEcCC
Confidence 224455555555444 34 4555554444554
No 122
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=44.24 E-value=94 Score=30.25 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=59.9
Q ss_pred cccccHHH-HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCC----chHHHHh
Q 015181 77 QYHRFKSD-IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDL----PQVLEDK 151 (411)
Q Consensus 77 ~y~~~~eD-~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~----P~~l~~~ 151 (411)
||-.|.++ .+.+++.+-+.--++..|-.|-|+| .+... ...++++.++++|+++++.+..++- +.-+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~- 80 (313)
T cd02874 7 YYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA- 80 (313)
T ss_pred EEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH-
Confidence 34444443 6777777777777888899998875 33221 2358999999999999999976541 111110
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHhC
Q 015181 152 YGGWLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 152 ~gg~~~~~~~~~f~~ya~~~~~~~g 176 (411)
-..+++..+.|++=+-.++++||
T Consensus 81 --~l~~~~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 81 --VLSNPEARQRLINNILALAKKYG 103 (313)
T ss_pred --HhcCHHHHHHHHHHHHHHHHHhC
Confidence 12356667777777777777775
No 123
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=44.24 E-value=1.8e+02 Score=29.73 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=60.6
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCcc-----------ccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC---------
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRI-----------FPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY--------- 140 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri-----------~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~--------- 140 (411)
..+-++.++++|++.+-+.--|..- +|+ +.++ +.|+ ..+++.+++.|+++-+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~-~~kF-P~Gl---~~l~~~i~~~Gmk~GlW~ePe~v~~~S~ 134 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPD-PKKF-PNGL---KPLADYIHSLGMKFGLWFEPEMVSPDSD 134 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBB-TTTS-TTHH---HHHHHHHHHTT-EEEEEEETTEEESSSC
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEC-hhhh-CCcH---HHHHHHHHHCCCeEEEEeccccccchhH
Confidence 3455788999999998888889653 222 1222 1344 7999999999999765330
Q ss_pred -CCCCchHHHHhhC-----C-------CCChhhHHHHHHHHHHHHHHhC-Ccce
Q 015181 141 -HWDLPQVLEDKYG-----G-------WLSRQIIEDFEHYAFTCFQEFG-DRVK 180 (411)
Q Consensus 141 -h~~~P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~g-d~v~ 180 (411)
.-..|.|+...-+ | ..+|++.+...+-...+++.+| |.+|
T Consensus 135 l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK 188 (394)
T PF02065_consen 135 LYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIK 188 (394)
T ss_dssp HCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred HHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1246888753201 1 3477888888888888888887 4443
No 124
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=43.76 E-value=1e+02 Score=34.51 Aligned_cols=101 Identities=23% Similarity=0.379 Sum_probs=63.2
Q ss_pred cCCCEEEEccc-CCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC---CCchH--HHHh-h-----------
Q 015181 91 LGMDAYRFSIS-WPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW---DLPQV--LEDK-Y----------- 152 (411)
Q Consensus 91 lG~~~~R~si~-W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~---~~P~~--l~~~-~----------- 152 (411)
+=++++++.+. |.+ ..+.=.+|+.-+---+.||+.|++.||+.++.+... |.|.. +.++ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45779999995 886 221223343333333599999999999999887532 33322 1110 0
Q ss_pred -------C---CCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccc
Q 015181 153 -------G---GWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQ 194 (411)
Q Consensus 153 -------g---g~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~ 194 (411)
+ .+.||+..+.|.+....-...+|= .-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 1 267899999998733333344433 5688999999987544
No 125
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=43.71 E-value=69 Score=30.59 Aligned_cols=80 Identities=13% Similarity=0.042 Sum_probs=53.4
Q ss_pred HHHHHHHHHcC----CCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCC
Q 015181 82 KSDIDLMKDLG----MDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 82 ~eD~~l~~~lG----~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
.+|++++.+.| ++.+|+.++-+.+.-.- -+.--.+.++-..++++.+++.|+++.+++.+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC-
Confidence 78999999999 99999987665443221 22222345777889999999999987755421 222
Q ss_pred ChhhHHHHHHHHHHHHHHhC
Q 015181 157 SRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~g 176 (411)
...+.+.+.++.+.+ +|
T Consensus 140 --~~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 --TDLDFLIEVVEAAIE-AG 156 (268)
T ss_pred --CCHHHHHHHHHHHHH-cC
Confidence 235566777777643 44
No 126
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=43.70 E-value=1.1e+02 Score=33.99 Aligned_cols=103 Identities=16% Similarity=0.351 Sum_probs=64.4
Q ss_pred HHHHHHcCCC--EEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC---CCCCc-----------hHH
Q 015181 85 IDLMKDLGMD--AYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY---HWDLP-----------QVL 148 (411)
Q Consensus 85 ~~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~---h~~~P-----------~~l 148 (411)
++.+.++|+. ..=..|.|-.-.. +=.+|..+.-...++++.|+++|++.++.+. +-+.. .|+
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~yk--DFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I 394 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGYK--DFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLI 394 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhccc--ceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhceee
Confidence 5667777776 5555555543322 2345666666678999999999999999886 22222 011
Q ss_pred ----------HHhhCC------CCChhhHHHHHHHHHHHHHHhCCcce---EEEEecCCccccc
Q 015181 149 ----------EDKYGG------WLSRQIIEDFEHYAFTCFQEFGDRVK---YWITFNEPHGFTL 193 (411)
Q Consensus 149 ----------~~~~gg------~~~~~~~~~f~~ya~~~~~~~gd~v~---~w~t~NEp~~~~~ 193 (411)
.+...| ++|+++++.+ ...+++|.+.|. +|+-+|||..++.
T Consensus 395 ~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 395 KNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 100112 5566555544 445568888765 8999999986654
No 127
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=43.34 E-value=54 Score=32.59 Aligned_cols=71 Identities=17% Similarity=0.267 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHH
Q 015181 83 SDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIE 162 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~ 162 (411)
.-|++|.+.|++-+=.|+ +.|++ -+...++.+.++++.+++.|+++||+. -|.-|.. -||.- ..++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S~-~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNISL-DNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCCh-HHHH
Confidence 347888899988665554 23332 223468999999999999999999998 4887753 45532 2345
Q ss_pred HHHHH
Q 015181 163 DFEHY 167 (411)
Q Consensus 163 ~f~~y 167 (411)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55444
No 128
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=42.80 E-value=1.7e+02 Score=27.87 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
.+|++..++.|++.+|+.++-+.+. -..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988666431 236789999999999988873
No 129
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=42.75 E-value=1e+02 Score=33.28 Aligned_cols=92 Identities=15% Similarity=0.086 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCc----hHHHHh------
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLP----QVLEDK------ 151 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P----~~l~~~------ 151 (411)
++|++.+.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999766553 224677788888998888877655455 222110
Q ss_pred ----------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 152 ----------YGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 152 ----------~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
..|...|. ...+..+.+.++++ ..-...+-|-..+
T Consensus 161 ~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred cCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 13555554 44555556666665 2223556666554
No 130
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=42.64 E-value=67 Score=35.38 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=35.8
Q ss_pred HHHHHHcCCCEEEEcccCCccc-----cC------CCC-----CCCh-----hHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 85 IDLMKDLGMDAYRFSISWPRIF-----PN------GTG-----EPNP-----EGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~ri~-----p~------g~g-----~~n~-----~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
|+.+|+||++++-+.=--.-.. .. |-. .++. ..++=+++||++|+++||++|+++
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 7899999999998763211110 00 100 1111 124558999999999999999986
No 131
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=42.49 E-value=59 Score=35.16 Aligned_cols=56 Identities=25% Similarity=0.414 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCEEEEcc--cCCcccc--------CCCCC-----------CCh----hHHHHHHHHHHHHHHcCCeEEEE
Q 015181 84 DIDLMKDLGMDAYRFSI--SWPRIFP--------NGTGE-----------PNP----EGISYYNSLIDALLEKGIQPCVT 138 (411)
Q Consensus 84 D~~l~~~lG~~~~R~si--~W~ri~p--------~g~g~-----------~n~----~~~~~y~~~i~~l~~~gi~p~vt 138 (411)
-++.+|+||++++-+.= +..-+.. -|-.. .|+ ...+=+++||++|+++||++|++
T Consensus 169 ~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilD 248 (605)
T TIGR02104 169 GLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMD 248 (605)
T ss_pred HHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEE
Confidence 38999999999998763 2211100 01000 011 01355899999999999999998
Q ss_pred c
Q 015181 139 L 139 (411)
Q Consensus 139 l 139 (411)
+
T Consensus 249 v 249 (605)
T TIGR02104 249 V 249 (605)
T ss_pred E
Confidence 5
No 132
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=42.17 E-value=63 Score=36.45 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=41.5
Q ss_pred cccHHHHHHHHHcCCCEEEEcccC---------------CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISW---------------PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W---------------~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
....+-+..+++||++++=+|=-. .+|.|+ -| +.+=+++++++++++||++|+++
T Consensus 20 ~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 20 DDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 446788999999999999776433 334333 22 34557899999999999999986
No 133
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=41.99 E-value=66 Score=30.35 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=43.3
Q ss_pred ccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 015181 100 ISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 100 i~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 176 (411)
+.|..+.++|.-.... .......+++.++++|+++++.+..+....... -..+++..+.|++=+-..+++|+
T Consensus 28 ~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 28 LAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 3455555554211110 123457889999999999999997655432111 12356667777766666667765
No 134
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=41.94 E-value=47 Score=33.04 Aligned_cols=109 Identities=23% Similarity=0.478 Sum_probs=59.5
Q ss_pred ccccHHHHHHHHHcCCCEEEEcc----cCCccccC---------------------------C-CCCCCh----hHHHHH
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSI----SWPRIFPN---------------------------G-TGEPNP----EGISYY 121 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si----~W~ri~p~---------------------------g-~g~~n~----~~~~~y 121 (411)
|+||++.|+.|+=-|+|..=--+ -|.|++-+ | .|.+.. +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67889999999988888643222 24444333 0 122221 123344
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCchHHHHhh--------CCC--------CChhhHHHHHHHHHHHH----HHhCCcceE
Q 015181 122 NSLIDALLEKGIQPCVTLYHWDLPQVLEDKY--------GGW--------LSRQIIEDFEHYAFTCF----QEFGDRVKY 181 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~--------gg~--------~~~~~~~~f~~ya~~~~----~~~gd~v~~ 181 (411)
+++++.+++.||+|++--+---+|..+.+++ +.| ++|. -+.|.+.++... +.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999999888777899888775 222 2332 367777777665 5688 3455
Q ss_pred E--EEecCC
Q 015181 182 W--ITFNEP 188 (411)
Q Consensus 182 w--~t~NEp 188 (411)
+ -+|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 5 488883
No 135
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.75 E-value=40 Score=34.85 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCCEEEEccc------CCccccCCCCCC--ChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 83 SDIDLMKDLGMDAYRFSIS------WPRIFPNGTGEP--NPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~------W~ri~p~g~g~~--n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
+-++.+++||++++=++=- +.+--..---.+ ....++-.++++++++++||++|+++
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6679999999999955421 111111100012 22346777899999999999999997
No 136
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=41.53 E-value=88 Score=31.21 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCEEEEcc-cCC-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEE-EEcCCCCCchHHHHhhCCCCCh
Q 015181 82 KSDIDLMKDLGMDAYRFSI-SWP-RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPC-VTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si-~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
++.++.++++|+|-+-+++ +-+ ++... -|+.. ..+-..+.++.+++.|++.+ ++|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6889999999999766666 332 33332 23322 13456789999999999854 6664 56663
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 159 QIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 159 ~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
++.+.|.+-.+.+.+-=-++|..+...=||+.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 23455666666554422255655554445543
No 137
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=41.34 E-value=1.6e+02 Score=29.65 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=60.5
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
-++.++.|+++|++.+-+++ .-+-++- -|... ..+-..+.++.+++.|+. +-++|. +++|.
T Consensus 102 ~~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 102 SESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred CHHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 36889999999999555554 3333321 12221 133456788999999997 556664 45553
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecCCccc
Q 015181 157 SRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGF 191 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 191 (411)
++.+.|.+=.+.+.+.=-++|..+...-||...
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245667777777665333788888888888754
No 138
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.10 E-value=2.1e+02 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.274 Sum_probs=33.2
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 015181 104 RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW 142 (411)
Q Consensus 104 ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~ 142 (411)
+..|...|-++++-+.-++++++.++++|-+.++=|.|-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 445544677899999999999999999999999999984
No 139
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.93 E-value=1.5e+02 Score=30.25 Aligned_cols=105 Identities=15% Similarity=0.213 Sum_probs=62.6
Q ss_pred cHHHHHHHHHcCCCEEEEccc--CCccccCCCCCCChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS--WPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~--W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-++.++.|+++|+|.+-+++. =.++... -|+.- ..+-..+.++.+++.|++ +.++|. +++|.
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 468899999999996666552 1222222 12221 123346889999999998 667775 56663
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccccccCCCC
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYDTGLQ 201 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~~ 201 (411)
++.+.+.+=.+.+.+-=-++|..+...-||.......+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2234455444444433236788887777887654444545544
No 140
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=40.78 E-value=99 Score=30.78 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=58.9
Q ss_pred CccccccHHHHHHHHHcCCCEEEEcccCCccccCC----CC--CCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHH
Q 015181 75 VDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNG----TG--EPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVL 148 (411)
Q Consensus 75 ~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g----~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l 148 (411)
++.+-.-++=++.+.++|++-+-+||+ .+-|+- .| .+| +++-.++.+.+.+.||.++++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 445556677789999999997777763 344431 13 444 677789999999999999986 7787
Q ss_pred HHhhCCCCChhhHHHHHHHHHHHH
Q 015181 149 EDKYGGWLSRQIIEDFEHYAFTCF 172 (411)
Q Consensus 149 ~~~~gg~~~~~~~~~f~~ya~~~~ 172 (411)
- | .|.+-...+.+||+.+-
T Consensus 266 P----G-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 P----G-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred C----C-cChHHHHHHHHHHHHhC
Confidence 2 3 45566788888888764
No 141
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.07 E-value=2.6e+02 Score=27.46 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCeEEEEcCCCCC---chHHHHh---h----------------C------CCCChhhHHHHHHHHHHHH
Q 015181 121 YNSLIDALLEKGIQPCVTLYHWDL---PQVLEDK---Y----------------G------GWLSRQIIEDFEHYAFTCF 172 (411)
Q Consensus 121 y~~~i~~l~~~gi~p~vtl~h~~~---P~~l~~~---~----------------g------g~~~~~~~~~f~~ya~~~~ 172 (411)
-++||+.|+++|++.++.++-+-. |..-+.+ | . .+.||+..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 469999999999999987754422 2211100 0 0 1468888888877775555
Q ss_pred HHhCCcceEEEEecCCcc
Q 015181 173 QEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 173 ~~~gd~v~~w~t~NEp~~ 190 (411)
...|= .-+|+=+|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 55443 357889999974
No 142
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=39.06 E-value=76 Score=38.50 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=43.5
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCC---------------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc--C
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWP---------------RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL--Y 140 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~---------------ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl--~ 140 (411)
+.-..+-+..+++||++++=+|=-+. +|.|+ -| +.+=+++++++|+++||++|+++ .
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~-lG-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPE-IG-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 33456678999999999997775444 23333 12 34557899999999999999986 4
Q ss_pred CCC
Q 015181 141 HWD 143 (411)
Q Consensus 141 h~~ 143 (411)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 653
No 143
>PLN02960 alpha-amylase
Probab=38.78 E-value=95 Score=35.06 Aligned_cols=94 Identities=13% Similarity=0.144 Sum_probs=58.7
Q ss_pred cccccHHH-HHHHHHcCCCEEEEccc--------CC-------ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc-
Q 015181 77 QYHRFKSD-IDLMKDLGMDAYRFSIS--------WP-------RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL- 139 (411)
Q Consensus 77 ~y~~~~eD-~~l~~~lG~~~~R~si~--------W~-------ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl- 139 (411)
.|.-..+. +..+|+||++++-+.=- |- .+.|. -|. .+=++.+|++|+++||++|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yGt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FGT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cCC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555444 89999999999987621 11 11111 122 2346899999999999999997
Q ss_pred -CCCCC--chHHH--Hh-------------hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 015181 140 -YHWDL--PQVLE--DK-------------YGGW-------LSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 140 -~h~~~--P~~l~--~~-------------~gg~-------~~~~~~~~f~~ya~~~~~~~g 176 (411)
.|+.. +.-|. +. ...| .++++.+.+.+-++.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45421 10010 00 0012 356777888888888888887
No 144
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=38.02 E-value=23 Score=26.10 Aligned_cols=38 Identities=13% Similarity=0.357 Sum_probs=31.4
Q ss_pred CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC
Q 015181 103 PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW 142 (411)
Q Consensus 103 ~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~ 142 (411)
+++.|+ .+.=-.++++..-+++..|.++|| +++.|++-
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 567788 566667889999999999999999 88887653
No 145
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=37.86 E-value=1e+02 Score=29.01 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 015181 118 ISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 118 ~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 176 (411)
.+...+.+..|+++|+++++++--+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999999998654432111 012455556777776666677776
No 146
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=37.43 E-value=86 Score=30.41 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=48.2
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.--++|++...+.|++.+-+.++=|...-+- -+.=-++.++.+.++++.++++|+++-+++
T Consensus 74 r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 74 RANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred cCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3457999999999999999887665554331 233456688999999999999999999888
No 147
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=36.54 E-value=2.7e+02 Score=24.79 Aligned_cols=20 Identities=10% Similarity=-0.031 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHhCCcc
Q 015181 160 IIEDFEHYAFTCFQEFGDRV 179 (411)
Q Consensus 160 ~~~~f~~ya~~~~~~~gd~v 179 (411)
..+....|++.+-++.|-++
T Consensus 101 ~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 101 LNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHCCCe
Confidence 34555666666666555544
No 148
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=36.53 E-value=56 Score=34.49 Aligned_cols=100 Identities=20% Similarity=0.363 Sum_probs=51.0
Q ss_pred HcCCCEEEEcccCCccccC------CCCCCChh-------HHHHHHHHHHHHHHc--CCeEEEEcCCCCCchHHHHh--h
Q 015181 90 DLGMDAYRFSISWPRIFPN------GTGEPNPE-------GISYYNSLIDALLEK--GIQPCVTLYHWDLPQVLEDK--Y 152 (411)
Q Consensus 90 ~lG~~~~R~si~W~ri~p~------g~g~~n~~-------~~~~y~~~i~~l~~~--gi~p~vtl~h~~~P~~l~~~--~ 152 (411)
.+|++..|..|.=+..-.. .++.++.+ ..++--.+|+++++. +|+.+.+- |..|.|.-.. +
T Consensus 111 G~g~s~~R~pIgssDfs~~~Yty~d~~~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~ 188 (496)
T PF02055_consen 111 GIGYSLLRVPIGSSDFSTRPYTYDDVPGDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASP--WSPPAWMKTNGSM 188 (496)
T ss_dssp TT---EEEEEES--SSSSS---ST-STTHTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEE--S---GGGBTTSSS
T ss_pred CceEEEEEeeccCcCCcCCcccccCCCCCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEec--CCCCHHHccCCcC
Confidence 4899999998843332211 01211111 112222566666543 47777776 8999998543 1
Q ss_pred --CCCCC----hhhHHHHHHHHHHHHHHhCCc-ceEE--EEecCCccc
Q 015181 153 --GGWLS----RQIIEDFEHYAFTCFQEFGDR-VKYW--ITFNEPHGF 191 (411)
Q Consensus 153 --gg~~~----~~~~~~f~~ya~~~~~~~gd~-v~~w--~t~NEp~~~ 191 (411)
+|.+. ++..+.|++|--..++.|... |+.| .+-|||...
T Consensus 189 ~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~ 236 (496)
T PF02055_consen 189 NGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDNG 236 (496)
T ss_dssp CSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCGG
T ss_pred cCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCC
Confidence 24443 355677777777777888763 6666 689999863
No 149
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=36.36 E-value=1.1e+02 Score=29.85 Aligned_cols=62 Identities=21% Similarity=0.495 Sum_probs=44.6
Q ss_pred cHHHHHHHHHcCCCEEEEccc----CCc---cccC----C--------CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS----WPR---IFPN----G--------TGEPNPEGISYYNSLIDALLEKGIQPCVTLYH 141 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~----W~r---i~p~----g--------~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h 141 (411)
.++-|+.|+..++|.+.+-++ |+- ..|+ | .|.+..+-+ +++++.++++||++|.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di---~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQL---KDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHH---HHHHHHHHHcCCEEEEec--
Confidence 566799999999999887775 521 1222 1 245555444 799999999999999876
Q ss_pred CCCchHH
Q 015181 142 WDLPQVL 148 (411)
Q Consensus 142 ~~~P~~l 148 (411)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 677654
No 150
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=36.35 E-value=1e+02 Score=30.04 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCccccccccc
Q 015181 118 ISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYD 197 (411)
Q Consensus 118 ~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~ 197 (411)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+.=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45567899999999999887764 45552 234666776666655434678888888888866555556
Q ss_pred CCCCCC
Q 015181 198 TGLQAP 203 (411)
Q Consensus 198 ~g~~~P 203 (411)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666544
No 151
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.11 E-value=1.1e+02 Score=31.71 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCCEEEEccc-CC-ccccC-CCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q 015181 82 KSDIDLMKDLGMDAYRFSIS-WP-RIFPN-GTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLP 145 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~-W~-ri~p~-g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P 145 (411)
+|.+++|+++|++.+-++++ -+ ++... +++ .+ .+.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 56689999999998888873 32 22221 112 22 45677999999999999888764 3444
No 152
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=36.10 E-value=1.4e+02 Score=29.65 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCc
Q 015181 84 DIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLP 145 (411)
Q Consensus 84 D~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P 145 (411)
+.+.+|++|.+++.|=+=|. |+.+-.+|..-.++.+++.++|++++|--++-+..+|.+
T Consensus 111 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~ 169 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDN 169 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 37899999999999988776 343346888889999999999999999999988776644
No 153
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=35.88 E-value=63 Score=31.04 Aligned_cols=81 Identities=11% Similarity=0.028 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhh
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQI 160 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~ 160 (411)
+.+++.+++.|++.+|+.++=|...-.- .|.-.++.++...+.++.+++.|+++.++..+|. + +. +..
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~------d--~~---~~~ 149 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFF------D--GY---KAN 149 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecc------c--cC---CCC
Confidence 3689999999999999987654432211 2333356788899999999999999988765551 1 11 122
Q ss_pred HHHHHHHHHHHHH
Q 015181 161 IEDFEHYAFTCFQ 173 (411)
Q Consensus 161 ~~~f~~ya~~~~~ 173 (411)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4556677777654
No 154
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=35.34 E-value=1.4e+02 Score=29.59 Aligned_cols=72 Identities=22% Similarity=0.425 Sum_probs=47.5
Q ss_pred CCcCccc--cccHHHHHHHHHcCCCEEEEccc----C-------CccccCC---------CCCCChhHHHHHHHHHHHHH
Q 015181 72 DTAVDQY--HRFKSDIDLMKDLGMDAYRFSIS----W-------PRIFPNG---------TGEPNPEGISYYNSLIDALL 129 (411)
Q Consensus 72 ~~a~d~y--~~~~eD~~l~~~lG~~~~R~si~----W-------~ri~p~g---------~g~~n~~~~~~y~~~i~~l~ 129 (411)
|+|-.++ ...++-|+.|+..++|.+-+-++ | +++-..| .|.+-.+- ++++++.++
T Consensus 9 D~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~d---i~elv~yA~ 85 (329)
T cd06568 9 DVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQED---YKDIVAYAA 85 (329)
T ss_pred eccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHH---HHHHHHHHH
Confidence 4444443 33567789999999998776662 3 3332221 13344433 479999999
Q ss_pred HcCCeEEEEcCCCCCchHHH
Q 015181 130 EKGIQPCVTLYHWDLPQVLE 149 (411)
Q Consensus 130 ~~gi~p~vtl~h~~~P~~l~ 149 (411)
++||++|.-+ |+|....
T Consensus 86 ~rgI~vIPEi---D~PGH~~ 102 (329)
T cd06568 86 ERHITVVPEI---DMPGHTN 102 (329)
T ss_pred HcCCEEEEec---CCcHHHH
Confidence 9999999876 6777643
No 155
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.78 E-value=1.2e+02 Score=29.14 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=51.2
Q ss_pred cCccccccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHH
Q 015181 74 AVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVL 148 (411)
Q Consensus 74 a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l 148 (411)
+.+..+...+=.+.+|++|+..+|-+..=+|--|.+ .|. +.+.+..+-+.+++.||..+.+.++-..+..+
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~----g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l 107 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL----GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEV 107 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc----HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHH
Confidence 445566677778999999999999997557776654 222 24555677777899999999998765444444
No 156
>PRK12677 xylose isomerase; Provisional
Probab=34.77 E-value=3.7e+02 Score=27.33 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=45.6
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEE-EEcCCCCCchHHHHhhCCCCCh
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPC-VTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
..|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.++||++. ++...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 57889999999999986632 2344432 1111111246788888999999966 56555555544 23788765
No 157
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=34.64 E-value=2.6e+02 Score=24.35 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHcCCCEEEEccc-CCc-cccCCCCCCChhHHHHHHHHHHHHHHcC-CeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSIS-WPR-IFPNGTGEPNPEGISYYNSLIDALLEKG-IQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~-W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~g-i~p~vtl 139 (411)
..-++.++.|++.|++.+.+|+. ++. +...-....+ .+.+.+.++.++++| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 34478899999999999999986 543 2111011122 477789999999999 6655443
No 158
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=34.58 E-value=1.3e+02 Score=25.77 Aligned_cols=57 Identities=18% Similarity=0.172 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcc
Q 015181 119 SYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRV 179 (411)
Q Consensus 119 ~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v 179 (411)
+=+.-+++.|++.|++|++.+.= -.+.|. .|-|. +++..+.|.+=.+..++++|-+|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wy--dytG~-~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWY--DYTGL-SKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHH--HHhCC-CHHHHHHHHHHHHHHHHHCCCEE
Confidence 33578999999999999998841 113454 24564 56667777777888888888644
No 159
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=34.42 E-value=1.5e+02 Score=29.98 Aligned_cols=94 Identities=20% Similarity=0.362 Sum_probs=57.1
Q ss_pred HcCCCEEEEcccCCccccCCCCCCChhHHHHHHHH--HHHHHHcCCeEEEEcCCCCCchHHHHhh---CC---CCChhhH
Q 015181 90 DLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSL--IDALLEKGIQPCVTLYHWDLPQVLEDKY---GG---WLSRQII 161 (411)
Q Consensus 90 ~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~--i~~l~~~gi~p~vtl~h~~~P~~l~~~~---gg---~~~~~~~ 161 (411)
++|++..|+.|.=.+.--. |.+| .+|+++ -...+..|+++|.+- |..|.|..+.. || -+.++-.
T Consensus 77 ~lg~si~Rv~I~~ndfsl~--g~~d----~w~kels~Ak~~in~g~ivfASP--WspPa~Mktt~~~ngg~~g~Lk~e~Y 148 (433)
T COG5520 77 QLGFSILRVPIDSNDFSLG--GSAD----NWYKELSTAKSAINPGMIVFASP--WSPPASMKTTNNRNGGNAGRLKYEKY 148 (433)
T ss_pred ccCceEEEEEecccccccC--CCcc----hhhhhcccchhhcCCCcEEEecC--CCCchhhhhccCcCCccccccchhHh
Confidence 4899999998865554333 5555 334433 233667888888876 88999986531 33 3444444
Q ss_pred HHHHHHHHHHHHHhCC---cceEEEEecCCccc
Q 015181 162 EDFEHYAFTCFQEFGD---RVKYWITFNEPHGF 191 (411)
Q Consensus 162 ~~f~~ya~~~~~~~gd---~v~~w~t~NEp~~~ 191 (411)
.+|++|-...+..+++ -+..-.+=|||...
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~ 181 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYA 181 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCccc
Confidence 4444444444455544 35566789999854
No 160
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=33.75 E-value=2.2e+02 Score=28.62 Aligned_cols=95 Identities=18% Similarity=0.245 Sum_probs=56.4
Q ss_pred cHHHHHHHHHcCCCEEEEccc--CCccccCCCCC-CChhHHHHHHHHHHHHHHcCCeE-EEEcCCCCCchHHHHhhCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS--WPRIFPNGTGE-PNPEGISYYNSLIDALLEKGIQP-CVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~--W~ri~p~g~g~-~n~~~~~~y~~~i~~l~~~gi~p-~vtl~h~~~P~~l~~~~gg~~ 156 (411)
-++.+++|+++|++.+-++++ -.++... -+. .+ .+-..+.++.+++.|+.. .+++. +++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~-l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKK-IGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------C
Confidence 468899999999997777762 2334333 222 22 355678999999999974 34442 45553 1
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccc
Q 015181 157 SRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFT 192 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~ 192 (411)
+.+.|.+=.+.+.+.=-+.|..+...-+|....
T Consensus 165 ---t~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 ---TIEDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred ---CHHHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 234455555554332224555555556776443
No 161
>PLN02389 biotin synthase
Probab=33.57 E-value=1.3e+02 Score=30.49 Aligned_cols=58 Identities=22% Similarity=0.308 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCc-cccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPR-IFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~r-i~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
..-+|.++.||+.|++.|-.+++=++ ++|+-...- .++..-+.++.+++.||++..++
T Consensus 175 ~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 175 MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 35689999999999999999885222 444421111 35667899999999999987665
No 162
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=33.50 E-value=2.4e+02 Score=29.44 Aligned_cols=94 Identities=27% Similarity=0.431 Sum_probs=58.6
Q ss_pred cHHH-HHHHHHcCCCEEEEc-------ccCCc-cccCC--CC---------CCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 81 FKSD-IDLMKDLGMDAYRFS-------ISWPR-IFPNG--TG---------EPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 81 ~~eD-~~l~~~lG~~~~R~s-------i~W~r-i~p~g--~g---------~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
++.| +.++|+|.+..+|+. -.|.. |-|.. +- +-|.=|. +++++.|+..|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt---~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGT---HEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccH---HHHHHHHHHhCCceEEEEe
Confidence 4666 689999999999963 13432 22220 00 1122233 6899999999999999985
Q ss_pred CCCCchHHHHhhCCCCChhhHHHHHHHHHH--------HHHHhCC----cceEEEEecCCc
Q 015181 141 HWDLPQVLEDKYGGWLSRQIIEDFEHYAFT--------CFQEFGD----RVKYWITFNEPH 189 (411)
Q Consensus 141 h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~gd----~v~~w~t~NEp~ 189 (411)
= |. ...+....|.+||.. .-+..|. .|++|.+=||-.
T Consensus 127 ~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 127 L-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred c-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 2 21 233445666666532 2334443 499999999963
No 163
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=33.19 E-value=55 Score=30.98 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=40.0
Q ss_pred cccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEE
Q 015181 77 QYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVT 138 (411)
Q Consensus 77 ~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 138 (411)
...++++-+++++.+|++.+++.-......+. ....-...++.++.+.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 34566677899999999999996432211111 11111234567888899999999977654
No 164
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=31.90 E-value=1.3e+02 Score=30.14 Aligned_cols=85 Identities=15% Similarity=0.218 Sum_probs=56.2
Q ss_pred CCcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCC------ChhH-HHHHHHHHHHHHHcCCeEEEEcCCCCC
Q 015181 72 DTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEP------NPEG-ISYYNSLIDALLEKGIQPCVTLYHWDL 144 (411)
Q Consensus 72 ~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~------n~~~-~~~y~~~i~~l~~~gi~p~vtl~h~~~ 144 (411)
=+|.=||+ |+--++.++. +..+|+. +|.+ .... -+....+++.++++|+-.=+...|-.+
T Consensus 77 lVADIHFd-~~lAl~a~~~--v~kiRIN----------PGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL 143 (359)
T PF04551_consen 77 LVADIHFD-YRLALEAIEA--VDKIRIN----------PGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSL 143 (359)
T ss_dssp EEEEESTT-CHHHHHHHHC---SEEEE-----------TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS
T ss_pred eeeecCCC-HHHHHHHHHH--hCeEEEC----------CCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccC
Confidence 34555665 5655555555 9999874 5666 0012 356789999999999999999999999
Q ss_pred chHHHHhhCCCCChhhHHHHHHHHHH
Q 015181 145 PQVLEDKYGGWLSRQIIEDFEHYAFT 170 (411)
Q Consensus 145 P~~l~~~~gg~~~~~~~~~f~~ya~~ 170 (411)
+.-+.++| |-.....++.-.++++.
T Consensus 144 ~~~~~~ky-~~t~~amvesA~~~~~~ 168 (359)
T PF04551_consen 144 EKDILEKY-GPTPEAMVESALEHVRI 168 (359)
T ss_dssp -HHHHHHH-CHHHHHHHHHHHHHHHH
T ss_pred cHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 99998887 33334445555566654
No 165
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=31.74 E-value=71 Score=31.87 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhH
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQII 161 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~ 161 (411)
.+|++...+.|++.+|+....++. +--.+.++.+++.|+++.+++..- + +...
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCCH
Confidence 589999999999999998865543 123789999999999999988531 1 1234
Q ss_pred HHHHHHHHHHHHHhCC
Q 015181 162 EDFEHYAFTCFQEFGD 177 (411)
Q Consensus 162 ~~f~~ya~~~~~~~gd 177 (411)
+.+.+.++.+. .+|-
T Consensus 144 e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 144 EKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHH-hCCC
Confidence 56677777653 4553
No 166
>PLN02923 xylose isomerase
Probab=31.68 E-value=2.9e+02 Score=28.56 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhh---HHHHHHHHHHHHHHhCCcceEEEEecCCccccc
Q 015181 117 GISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQI---IEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTL 193 (411)
Q Consensus 117 ~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~---~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~ 193 (411)
+...-+-.++.+.+-|+ |.+|+|--|+-. + |. .-.+. .+.-.++.+...+.-|-+ +.|+-+|+++.
T Consensus 121 A~~k~daaFEf~~kLG~-~y~cFHD~Dl~P----e-g~-sl~E~~~nld~ivd~~ke~~~~TGik----llwgTaNlFsh 189 (478)
T PLN02923 121 AKRRMRANFEFLKKLGV-DRWCFHDRDIAP----D-GK-TLEESNANLDEVVALAKELQEGTKIR----PLWGTAQLFKH 189 (478)
T ss_pred HHHHHHHHHHHHHHhCC-CeEccCccccCC----C-CC-CHHHHHhhHHHHHHHHHHHhHhhCce----eeeeccccccC
Confidence 56667777888899998 667888776532 1 22 11222 334444444444444333 45666777777
Q ss_pred ccccCCCC
Q 015181 194 QGYDTGLQ 201 (411)
Q Consensus 194 ~gy~~g~~ 201 (411)
--|+.|..
T Consensus 190 Prf~~GAa 197 (478)
T PLN02923 190 PRYMHGAA 197 (478)
T ss_pred ccccCCcC
Confidence 67776653
No 167
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=31.25 E-value=1.2e+02 Score=31.49 Aligned_cols=86 Identities=17% Similarity=0.304 Sum_probs=49.9
Q ss_pred cHHHHHHHHHcCCCEEEEccc-CC-ccccCCCCCCChhHHHHHHHHHHHHHHcCC-eEEEEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS-WP-RIFPNGTGEPNPEGISYYNSLIDALLEKGI-QPCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~-W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi-~p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-+|.+++|+++|++.+.+++. =+ ++... -+... ..+-..+.++.+++.|+ .+.++|. +++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg----------- 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRIQ--PFEFTFALVEAARELGFTSINIDLI-YGLPK----------- 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCcEEEEEE-ccCCC-----------
Confidence 468899999999997777662 21 12211 12211 23455789999999999 5556553 45552
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEE
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYW 182 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w 182 (411)
++.+.|.+-.+.+.+.=-+++..+
T Consensus 215 -qt~e~~~~~l~~~~~l~~~~i~~y 238 (453)
T PRK09249 215 -QTPESFARTLEKVLELRPDRLAVF 238 (453)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEc
Confidence 234556665555554222444443
No 168
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=31.16 E-value=2.7e+02 Score=26.39 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHc-CCeEEEE
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEK-GIQPCVT 138 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~-gi~p~vt 138 (411)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+.
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~~ 65 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSVH 65 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEEE
Confidence 6689999999999999998888765544431 1233 3456777777787 6665543
No 169
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=31.13 E-value=1.9e+02 Score=29.83 Aligned_cols=92 Identities=9% Similarity=0.203 Sum_probs=53.5
Q ss_pred cHHHHHHHHHcCCCEEEEccc-C-CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEE-EEcCCCCCchHHHHhhCCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS-W-PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPC-VTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~-W-~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtl~h~~~P~~l~~~~gg~~~ 157 (411)
-++.+++|+++|++.+.+++. = .++... -|.-. ..+-..+.|+.+++.|+..+ ++|. +++|.
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~----------- 204 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHA-LHRPQ--KRADVHQALEWIRAAGFPILNIDLI-YGIPG----------- 204 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 367899999999996666662 2 223222 12221 23456789999999999864 5653 45663
Q ss_pred hhhHHHHHHHHHHHHHHhC-CcceEEEEecCCc
Q 015181 158 RQIIEDFEHYAFTCFQEFG-DRVKYWITFNEPH 189 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~ 189 (411)
++.+.|.+=.+.+.+ ++ +++..+...=+|+
T Consensus 205 -qt~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 205 -QTHASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred -CCHHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 224455555555443 44 4555554333443
No 170
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=30.49 E-value=3.3e+02 Score=25.91 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHcCCCEEEEccc----------CCc--------------------------cccCC--CCCCChhHHHHH
Q 015181 80 RFKSDIDLMKDLGMDAYRFSIS----------WPR--------------------------IFPNG--TGEPNPEGISYY 121 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~----------W~r--------------------------i~p~g--~g~~n~~~~~~y 121 (411)
-|+|-+.+.|++|++.+-+||+ |++ -+|-| +-...+++++-.
T Consensus 19 sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM 98 (287)
T COG3623 19 SWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIM 98 (287)
T ss_pred CHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHHHHHHHHH
Confidence 4788889999999998888873 432 22332 112234566677
Q ss_pred HHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHH---HHHHHh
Q 015181 122 NSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAF---TCFQEF 175 (411)
Q Consensus 122 ~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~---~~~~~~ 175 (411)
.+-|..+++.||+.| -|--||.= =--.++++..+|.+=-+ ..++++
T Consensus 99 ~KaI~LA~dLGIRtI-QLAGYDVY-------YE~~d~eT~~rFi~g~~~a~~lA~~a 147 (287)
T COG3623 99 EKAIQLAQDLGIRTI-QLAGYDVY-------YEEADEETRQRFIEGLKWAVELAARA 147 (287)
T ss_pred HHHHHHHHHhCceeE-eeccceee-------eccCCHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777765 33333321 11247788888875444 445555
No 171
>PTZ00445 p36-lilke protein; Provisional
Probab=30.48 E-value=1.1e+02 Score=28.65 Aligned_cols=56 Identities=18% Similarity=0.288 Sum_probs=40.0
Q ss_pred HHHHHHcCCCEEEEcccCCccccCCCCCCChh---------HHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 85 IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPE---------GISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~---------~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
++++++.|++++=+.++=.-|---..|..++. +-.-...++.+|+++||.++|-.+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999998887765542212322322 234467899999999999887664
No 172
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.41 E-value=93 Score=29.63 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCccccCCC-CCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGT-GEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~-g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
-.++++-+++++++|.+.++++-. +..+... ...-...++.++++.+.++++||.+.+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 445677799999999999998521 1111100 01112245677788899999999888754
No 173
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=30.31 E-value=47 Score=34.47 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=46.3
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC---CCC-CChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG---TGE-PNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGW 155 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~ 155 (411)
-++.+++|+++|++.+-+++ ...-++- -+. .+ .+.+.+.++.+++.|++ +-++|. +++|.
T Consensus 150 ~~e~l~~lk~~G~~risiGv--qS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg--------- 214 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGV--QDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK--------- 214 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC---------
Confidence 36889999999999666655 3332221 122 22 35567999999999997 445543 45552
Q ss_pred CChhhHHHHHHHHHHHHH
Q 015181 156 LSRQIIEDFEHYAFTCFQ 173 (411)
Q Consensus 156 ~~~~~~~~f~~ya~~~~~ 173 (411)
++.+.|.+-.+.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~ 229 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAE 229 (455)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 234556665555544
No 174
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=29.63 E-value=2e+02 Score=31.11 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=54.5
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCch----HHHHh-----
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQ----VLEDK----- 151 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~----~l~~~----- 151 (411)
.++|+++.++.|++.+|+..+-+.+ +-....++.++++|....+++..-..|. .+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998765544 1225666777777777776664322241 11110
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCcc
Q 015181 152 -----------YGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHG 190 (411)
Q Consensus 152 -----------~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~ 190 (411)
..|-..|. ...+.++.+-++++ ..-...+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 210 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGL 210 (592)
T ss_pred HcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCc
Confidence 13444544 45666666667774 2234456666554
No 175
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=28.68 E-value=1.9e+02 Score=22.03 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=31.6
Q ss_pred HHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 86 DLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
+.++.+|+.++|-| . +..+.+-..+++..|+ .|..+.+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s------~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------S------SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------C------CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 78889999999998 1 2235667789999999 788777775
No 176
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=28.35 E-value=1.7e+02 Score=29.31 Aligned_cols=91 Identities=14% Similarity=0.235 Sum_probs=55.5
Q ss_pred HHHHHHHHHcCCCEEEEccc-C-CccccCCCCC-CChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCCC
Q 015181 82 KSDIDLMKDLGMDAYRFSIS-W-PRIFPNGTGE-PNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~-W-~ri~p~g~g~-~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
+|.+++|+++|++.+-++++ = .++... -|. .+ .+-+.+.++.++++|+. +.++|. +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQ-LNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 68899999999996555552 2 222222 122 23 34557899999999997 556654 45552
Q ss_pred hhhHHHHHHHHHHHHHHhC-CcceEEEEecCCcc
Q 015181 158 RQIIEDFEHYAFTCFQEFG-DRVKYWITFNEPHG 190 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~g-d~v~~w~t~NEp~~ 190 (411)
++.+.|.+=.+.+.+ ++ +.|..+...=||+.
T Consensus 167 -qt~e~~~~tl~~~~~-l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILK-HKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHh-cCCCEEEEEeeEecCCC
Confidence 234556665665443 44 56666655556664
No 177
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=28.22 E-value=61 Score=28.75 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=41.4
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
....++-+++++.+|++.+++...+-...+.. ...--....+.++.+.+.+.++|+++.+=-
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 55678889999999999999997641111110 001112245778888889999998877653
No 178
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=28.11 E-value=1.2e+02 Score=30.34 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=45.6
Q ss_pred CCcCccc--cccHHHHHHHHHcCCCEEEEcccCC---ccc----cC----C----CCCCChhHHHHHHHHHHHHHHcCCe
Q 015181 72 DTAVDQY--HRFKSDIDLMKDLGMDAYRFSISWP---RIF----PN----G----TGEPNPEGISYYNSLIDALLEKGIQ 134 (411)
Q Consensus 72 ~~a~d~y--~~~~eD~~l~~~lG~~~~R~si~W~---ri~----p~----g----~g~~n~~~~~~y~~~i~~l~~~gi~ 134 (411)
|+|-.++ ...++=|+.|+..++|.+-+=+.=. ||+ |+ | .|.+-.+. ++++|+.++++||+
T Consensus 9 DvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~d---i~eiv~yA~~rgI~ 85 (348)
T cd06562 9 DTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPED---VKEIVEYARLRGIR 85 (348)
T ss_pred eccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHH---HHHHHHHHHHcCCE
Confidence 4444443 2355668999999999887655211 222 21 1 12344433 58999999999999
Q ss_pred EEEEcCCCCCchHH
Q 015181 135 PCVTLYHWDLPQVL 148 (411)
Q Consensus 135 p~vtl~h~~~P~~l 148 (411)
+|.-+ |+|...
T Consensus 86 vIPEI---D~PGH~ 96 (348)
T cd06562 86 VIPEI---DTPGHT 96 (348)
T ss_pred EEEec---cCchhh
Confidence 99876 677654
No 179
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.66 E-value=2.1e+02 Score=26.36 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=53.7
Q ss_pred HHHHHH----HHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCC
Q 015181 82 KSDIDL----MKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 82 ~eD~~l----~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
++|++. +++.|++.+|+.++=+.....- -+.--++.++...++++.+++.|+++.+++-+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------- 132 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------- 132 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-------------
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-------------
Confidence 455555 4569999999998665543321 2333345678888999999999999988875422
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 015181 157 SRQIIEDFEHYAFTCFQE 174 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~ 174 (411)
+-..+.+.++++.+.+.
T Consensus 133 -~~~~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 133 -RTDPEELLELAEALAEA 149 (237)
T ss_dssp -GSSHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHc
Confidence 12246677777777655
No 180
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.36 E-value=1.6e+02 Score=34.44 Aligned_cols=62 Identities=18% Similarity=0.408 Sum_probs=40.0
Q ss_pred ccccHHHHHHHHHcCCCEEEEcccCC--cc---------c--------------------cCCCCCCCh----hHHHHHH
Q 015181 78 YHRFKSDIDLMKDLGMDAYRFSISWP--RI---------F--------------------PNGTGEPNP----EGISYYN 122 (411)
Q Consensus 78 y~~~~eD~~l~~~lG~~~~R~si~W~--ri---------~--------------------p~g~g~~n~----~~~~~y~ 122 (411)
|.-..+.++.+|+||++++-+.=-.+ .+ . |++.-..|+ ..++=++
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK 558 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFK 558 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHH
Confidence 44555679999999999998763221 11 0 110000011 0145579
Q ss_pred HHHHHHHHcCCeEEEEc
Q 015181 123 SLIDALLEKGIQPCVTL 139 (411)
Q Consensus 123 ~~i~~l~~~gi~p~vtl 139 (411)
+||++|+++||++|+++
T Consensus 559 ~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 559 NLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHCCCEEEEec
Confidence 99999999999999985
No 181
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.10 E-value=2.2e+02 Score=27.54 Aligned_cols=78 Identities=10% Similarity=0.219 Sum_probs=43.4
Q ss_pred CChhHHHHHHHHHHHHHHcCCeEEEEcCCC-CC-ch-H----HHHhhC-----------CCCChhhHHHHHHHHHHHHHH
Q 015181 113 PNPEGISYYNSLIDALLEKGIQPCVTLYHW-DL-PQ-V----LEDKYG-----------GWLSRQIIEDFEHYAFTCFQE 174 (411)
Q Consensus 113 ~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~-~~-P~-~----l~~~~g-----------g~~~~~~~~~f~~ya~~~~~~ 174 (411)
+|.+-.--..+||++|+++|++.++.++-. .. |. . +.+..+ .+.+|+..+.|.+-....+..
T Consensus 68 ~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 68 WNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred EChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 333333334789999999999988877532 11 11 1 111111 255777666554433333333
Q ss_pred hCCcceEEEEecCCccc
Q 015181 175 FGDRVKYWITFNEPHGF 191 (411)
Q Consensus 175 ~gd~v~~w~t~NEp~~~ 191 (411)
.|= .-+|.=+|||..+
T Consensus 148 ~Gi-dg~W~D~~E~~~~ 163 (292)
T cd06595 148 QGV-DFWWLDWQQGNRT 163 (292)
T ss_pred cCC-cEEEecCCCCccc
Confidence 432 3478899999764
No 182
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=27.04 E-value=89 Score=31.69 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=43.4
Q ss_pred CcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEE
Q 015181 73 TAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVT 138 (411)
Q Consensus 73 ~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vt 138 (411)
.|+|-+-.+++-|+.+++.|++++ |+|- |.++. +++|+++.++||..+.|
T Consensus 334 lASDAFFPF~D~Id~Aa~~GV~aI--------iQPG--GSiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 334 LGSDAFFPFGDNIERAAKSGVKYI--------AQPG--GSIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred EEecccCCCCchHHHHHHcCCEEE--------ECCC--CCCCc------HHHHHHHHHhCCEEEEC
Confidence 589999999999999999999987 7886 56653 68999999999998876
No 183
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.98 E-value=6.8e+02 Score=25.38 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEE-EcCCCCCchHHHHhhCCCCC
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCV-TLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~v-tl~h~~~P~~l~~~~gg~~~ 157 (411)
-...+-++.++++|++.+=| ....+.|-+ ....+--...+++-+.|.++||++.. +..-+..|.+ +.|++.+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~--~~~dl~P~~--~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las 104 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTF--HDDDLIPFG--APPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTS 104 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEe--cccccCCCC--CChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCC
Confidence 34678899999999998854 334455552 11111113357788889999999654 4322322333 2267776
Q ss_pred hhh--HHH-HHHH--HHHHHHHhCCc
Q 015181 158 RQI--IED-FEHY--AFTCFQEFGDR 178 (411)
Q Consensus 158 ~~~--~~~-f~~y--a~~~~~~~gd~ 178 (411)
++- .+. +... +-.+++.+|-+
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 532 222 2222 22336677764
No 184
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.72 E-value=1.3e+02 Score=31.22 Aligned_cols=84 Identities=17% Similarity=0.291 Sum_probs=49.8
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCCe-EEEEcCCCCCchHHHHhhCCCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWL 156 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~ 156 (411)
-++.+++|+++|++.+-+++ .-.-|+- -+.. ...+-..+.++.+++.|++ +-++|. +++|.
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlPg---------- 215 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLPH---------- 215 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCCC----------
Confidence 47889999999999665555 3333221 1221 1244557899999999997 455553 45552
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CcceEE
Q 015181 157 SRQIIEDFEHYAFTCFQEFG-DRVKYW 182 (411)
Q Consensus 157 ~~~~~~~f~~ya~~~~~~~g-d~v~~w 182 (411)
++.+.|.+-.+.+.+ ++ +++..+
T Consensus 216 --qt~e~~~~tl~~~~~-l~p~~i~~y 239 (453)
T PRK13347 216 --QTVESFRETLDKVIA-LSPDRIAVF 239 (453)
T ss_pred --CCHHHHHHHHHHHHh-cCCCEEEEe
Confidence 234556665555543 33 444443
No 185
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline
Probab=26.55 E-value=5.9e+02 Score=24.55 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=69.3
Q ss_pred cHHHHHHHHHcCCCEEEEccc-CCccccC----C---CCCCChhHHHHHHHHHHHHHHcC---CeEEEEcCCCCCchHHH
Q 015181 81 FKSDIDLMKDLGMDAYRFSIS-WPRIFPN----G---TGEPNPEGISYYNSLIDALLEKG---IQPCVTLYHWDLPQVLE 149 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~-W~ri~p~----g---~g~~n~~~~~~y~~~i~~l~~~g---i~p~vtl~h~~~P~~l~ 149 (411)
=.+.|+..-++|.|++=+.|. |+-=.|. | +..-+....+..++.++.+++.- -+--++|.-+|+
T Consensus 9 ~~~~v~~~l~~GANaiE~Dv~f~~~~~~~~~~Hg~pcdc~r~c~~~~~f~~~l~~~r~~ttpg~~~~l~lv~lDl----- 83 (265)
T cd08576 9 DLEGVDDALDHGANAIEIDVTFWSNGTGWWADHDVPCDCFRGCTAREMFDEILDYRRNGTTPGFRENLIFVWLDL----- 83 (265)
T ss_pred cHHHHHHHHHcCCCceeEEEEEccCCcEEEeeCCCccccccCCcHHHHHHHHHHHHHhcCCCCccceeEEEEEEc-----
Confidence 357788888999999999995 5332332 1 11114445677788888888763 122223322232
Q ss_pred HhhCCCCChhhHHHHHHHHHHHHHHhCCc---ceEEEEecCCcc
Q 015181 150 DKYGGWLSRQIIEDFEHYAFTCFQEFGDR---VKYWITFNEPHG 190 (411)
Q Consensus 150 ~~~gg~~~~~~~~~f~~ya~~~~~~~gd~---v~~w~t~NEp~~ 190 (411)
+.+++......+...+.|+.+.++|+.+ +.-.+.+..|.+
T Consensus 84 -K~~~~~~~~~~~ag~~la~~ll~~~w~~~~~~ra~~~~s~~~~ 126 (265)
T cd08576 84 -KNPDLCGECSINAGRDLARKLLEPYWNGGSGARALYGFSIPSI 126 (265)
T ss_pred -CCCCcCHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEeccc
Confidence 3366677888999999999999999955 777777777754
No 186
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=26.15 E-value=1.7e+02 Score=27.93 Aligned_cols=54 Identities=24% Similarity=0.415 Sum_probs=38.0
Q ss_pred CCCCCcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 69 SNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 69 ~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.||++.. +++|++|++.+=++-|=.|..= ++-| +.-.+=+..++++||+|++++
T Consensus 73 ~TGevS~----------~mLkd~G~~~viiGHSERR~~f---~Etd----~~v~~K~~~a~~~gl~pIvCi 126 (250)
T PRK00042 73 FTGEISA----------EMLKDLGVKYVIIGHSERRQYF---GETD----ELVNKKVKAALKAGLTPILCV 126 (250)
T ss_pred ccCccCH----------HHHHHCCCCEEEeCcccccCcc---CcCH----HHHHHHHHHHHHCCCEEEEEc
Confidence 4666655 8999999999999987555421 2222 222344455999999999998
No 187
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=26.04 E-value=2.8e+02 Score=25.15 Aligned_cols=67 Identities=25% Similarity=0.383 Sum_probs=39.3
Q ss_pred CCcCccccccHHHHHHHHHcCCCEEEEcccCCcccc--CC---CCCCCh---hHHHH---HHHHHHHHHHcCCeEEEEcC
Q 015181 72 DTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFP--NG---TGEPNP---EGISY---YNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 72 ~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p--~g---~g~~n~---~~~~~---y~~~i~~l~~~gi~p~vtl~ 140 (411)
|.|=.|| |+|.++.++++|++...+|-.=....| ++ +|-.+. +.+.. ..+.|.+..++| +|++.++
T Consensus 6 d~aF~f~--y~e~~~~l~~~G~~v~~~s~~~~~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g-~pilgIC 82 (198)
T cd03130 6 DEAFNFY--YPENLELLEAAGAELVPFSPLKDEELPDADGLYLGGGYPELFAEELSANQSMRESIRAFAESG-GPIYAEC 82 (198)
T ss_pred cCccccc--cHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcC-CCEEEEc
Confidence 3454555 899999999999999888752111122 11 233333 23322 234455555667 4888888
Q ss_pred C
Q 015181 141 H 141 (411)
Q Consensus 141 h 141 (411)
+
T Consensus 83 g 83 (198)
T cd03130 83 G 83 (198)
T ss_pred c
Confidence 5
No 188
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=25.97 E-value=1e+02 Score=32.26 Aligned_cols=54 Identities=31% Similarity=0.457 Sum_probs=45.1
Q ss_pred CcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEE-cCCC
Q 015181 73 TAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVT-LYHW 142 (411)
Q Consensus 73 ~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vt-l~h~ 142 (411)
.|+|-+-.+.+-|+.+++.|++++ |+|- |.++. +++|+++-++||..+.| +-||
T Consensus 459 ~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG--GSirD------~eVI~aAde~giaMvfTg~RhF 513 (515)
T COG0138 459 LASDAFFPFPDGIDAAAKAGIKAI--------IQPG--GSIRD------QEVIAAADEHGIAMVFTGVRHF 513 (515)
T ss_pred EeecccCCCcchHHHHHHcCCeEE--------ECCC--Ccccc------HHHHHHHHhcCcEEEEcccccc
Confidence 578999999999999999999987 7886 56653 68999999999998877 3344
No 189
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.73 E-value=5.7e+02 Score=24.08 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeE--EEEcCCCCCchHHHHhhCCCCCh
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQP--CVTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p--~vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
+++-++.++++|++.+=+++.=....+. ...++.+.+ +.+-+.++++||++ +.+..|...| -+-.++
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~~~~---~~l~~~l~~~gl~i~~~~~~~~~~~~-------~~~~~~ 91 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLA-RLDWSREQR---LALVNALVETGFRVNSMCLSAHRRFP-------LGSEDD 91 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchh-ccCCCHHHH---HHHHHHHHHcCCceeEEecccccccC-------CCCCCH
Q ss_pred hhHHHHHHHHHHHHHH
Q 015181 159 QIIEDFEHYAFTCFQE 174 (411)
Q Consensus 159 ~~~~~f~~ya~~~~~~ 174 (411)
+..+...++.+.+++.
T Consensus 92 ~~r~~~~~~~~~~i~~ 107 (283)
T PRK13209 92 AVRAQALEIMRKAIQL 107 (283)
T ss_pred HHHHHHHHHHHHHHHH
No 190
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=25.59 E-value=2.5e+02 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHHHHHcCCCEEEEcccCCc---cccCCCCCCChh----HHHHHHHHHHHHHHcCCeEEEE
Q 015181 85 IDLMKDLGMDAYRFSISWPR---IFPNGTGEPNPE----GISYYNSLIDALLEKGIQPCVT 138 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~r---i~p~g~g~~n~~----~~~~y~~~i~~l~~~gi~p~vt 138 (411)
++++|++|++.+=+--.-.. +.|.....+|-. .-+...++.++|+++||+.-+-
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y 147 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGLY 147 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEEE
Confidence 79999999997754322111 122211111110 2356689999999999998873
No 191
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=25.49 E-value=2.1e+02 Score=26.81 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=37.7
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCC--CCCChhHHHHHHHHHHHHHHcCCeEEEE-cCCCCCc
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGT--GEPNPEGISYYNSLIDALLEKGIQPCVT-LYHWDLP 145 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~--g~~n~~~~~~y~~~i~~l~~~gi~p~vt-l~h~~~P 145 (411)
.++=+++++++|.+.+++...+ . |.+. ...-....+..+++.+.++++||+..+= +.|++.|
T Consensus 87 ~~~~i~~a~~lga~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~ 151 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLVGK--T-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIP 151 (258)
T ss_pred HHHHHHHHHHhCCCEEEECCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCC
Confidence 5666899999999999874322 1 2210 1111123455567777788999997774 3465444
No 192
>PRK01060 endonuclease IV; Provisional
Probab=24.87 E-value=3e+02 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.249 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeE
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQP 135 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (411)
+++-++.++++|++.+-+.+.-++.+.. +..+.+- .+++-+.+.++|+++
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCC
Confidence 6788999999999999998765554432 2345433 356667788999984
No 193
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.26 E-value=1.3e+02 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=37.8
Q ss_pred cccHHHHHHHHHcCCCEEEEcccCCcc-ccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 79 HRFKSDIDLMKDLGMDAYRFSISWPRI-FPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 79 ~~~~eD~~l~~~lG~~~~R~si~W~ri-~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.+.++-++.+++||++.+|+. ..... .+. ....-...++..+.+.+.+.++||+..+=-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~-~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLA-GYDVYYEEK-SEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEC-Ccccccccc-cHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 445666889999999999974 11111 111 111112345677888899999999877654
No 194
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=23.88 E-value=2.2e+02 Score=27.85 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhC
Q 015181 120 YYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFG 176 (411)
Q Consensus 120 ~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~g 176 (411)
-..+-|..|+++|+++++++--++-. ....+++..+.|++....+++.||
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 34677889999999999998543311 012355667777777777777776
No 195
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.84 E-value=2.9e+02 Score=27.21 Aligned_cols=61 Identities=15% Similarity=0.351 Sum_probs=43.4
Q ss_pred cHHHHHHHHHcCCCEEEEcc----cCCc---cccC----C--CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchH
Q 015181 81 FKSDIDLMKDLGMDAYRFSI----SWPR---IFPN----G--TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQV 147 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si----~W~r---i~p~----g--~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~ 147 (411)
.++=|+.|+..++|.+-+-+ +|+- -.|+ | .|.+..+. ++++++.++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~d---i~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQ---IREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHH---HHHHHHHHHHcCCEEEEee---cCccc
Confidence 45568999999999887765 5642 2333 1 13455444 4799999999999999876 56654
No 196
>PRK07094 biotin synthase; Provisional
Probab=23.79 E-value=1.2e+02 Score=29.57 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHcCCCEEEEccc-C-CccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 80 RFKSDIDLMKDLGMDAYRFSIS-W-PRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si~-W-~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.-+|+++.|+++|++.+-++++ - +++...-.... ..+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~---s~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGM---SFENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCC---CHHHHHHHHHHHHHcCCeecceE
Confidence 4578999999999999998884 2 34443311112 24667789999999999865554
No 197
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=23.77 E-value=2.7e+02 Score=27.41 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhH
Q 015181 83 SDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQII 161 (411)
Q Consensus 83 eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~ 161 (411)
+=++.|++.|+|+|=+.=.-.-.--.- ...+.++.++..+++++.++++||+-+++|+ |..... +. .-
T Consensus 19 ~l~~f~~~~kmN~YiYAPKdDpyhr~~Wre~Yp~~el~~l~~L~~~a~~~~V~Fv~ais----Pg~~~~----~s---~~ 87 (306)
T PF07555_consen 19 DLIRFLGRYKMNTYIYAPKDDPYHRSKWREPYPEEELAELKELADAAKANGVDFVYAIS----PGLDIC----YS---SE 87 (306)
T ss_dssp HHHHHHHHTT--EEEE--TT-TTTTTTTTS---HHHHHHHHHHHHHHHHTT-EEEEEEB----GTTT------TS---HH
T ss_pred HHHHHHHHcCCceEEECCCCChHHHhhhcccCCHHHHHHHHHHHHHHHHcCCEEEEEEC----cccccc----cC---cH
Confidence 447888999999998653111110000 1234556789999999999999999999995 543321 12 34
Q ss_pred HHHHHHHHHHHHHhCCcceEEEEe
Q 015181 162 EDFEHYAFTCFQEFGDRVKYWITF 185 (411)
Q Consensus 162 ~~f~~ya~~~~~~~gd~v~~w~t~ 185 (411)
+++....+.+-+-+.--|+...++
T Consensus 88 ~d~~~L~~K~~ql~~lGvr~Fail 111 (306)
T PF07555_consen 88 EDFEALKAKFDQLYDLGVRSFAIL 111 (306)
T ss_dssp HHHHHHHHHHHHHHCTT--EEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEe
Confidence 566666666666665566655443
No 198
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.36 E-value=51 Score=19.86 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCeE
Q 015181 122 NSLIDALLEKGIQP 135 (411)
Q Consensus 122 ~~~i~~l~~~gi~p 135 (411)
.++++.+++.||+|
T Consensus 21 ~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 21 LQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHhCCCC
Confidence 57888888889887
No 199
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=23.32 E-value=1.6e+02 Score=25.77 Aligned_cols=68 Identities=18% Similarity=0.135 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCeEE--EEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEEecC
Q 015181 119 SYYNSLIDALLEKGIQPC--VTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNE 187 (411)
Q Consensus 119 ~~y~~~i~~l~~~gi~p~--vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NE 187 (411)
+=|+++++.|+..++..- ..+.+=.+|..+.++ -=-.|=...++|..+-+++++-++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 458999999999986532 224455677766543 11123334789999999999999998876666666
No 200
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=23.04 E-value=2.4e+02 Score=26.03 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=40.5
Q ss_pred CCCCCcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 69 SNADTAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 69 ~~~~~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.||+++. .++|++|++..=++-|=.| +.+ .. -.+-+..++++||+|+++.
T Consensus 68 ~TGevS~----------~mLkd~G~~~viiGHSERR-f~E-td---------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 68 HTGEISA----------EMLKDIGAKGTLINHSERR-MKL-AD---------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred ccCcCCH----------HHHHHcCCCEEEECcccCC-CCc-cH---------HHHHHHHHHHCCCEEEEEE
Confidence 4666655 8999999999999988778 444 21 3678889999999999999
No 201
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=22.90 E-value=91 Score=27.19 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=38.8
Q ss_pred CcCccccccHHHHHH-HHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeE
Q 015181 73 TAVDQYHRFKSDIDL-MKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQP 135 (411)
Q Consensus 73 ~a~d~y~~~~eD~~l-~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (411)
.+|......++|++. ++++|+..+++.+.|+--.-. ..+.++ --..|+++||.|
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d~it~~-------gr~~l~~~giap 90 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--DWITED-------AREKLREYGIAP 90 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--HHCCHH-------HHHHHHhcCccC
Confidence 467777888888744 677899999998877654332 445544 446789999987
No 202
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=22.75 E-value=1.7e+02 Score=32.44 Aligned_cols=58 Identities=28% Similarity=0.398 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccC--C-----CCCCChh--HHHHHHHHHHHHHHcCCeEEEEc
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPN--G-----TGEPNPE--GISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~--g-----~g~~n~~--~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
++-+..+++||++++=.|--|.-.==. | +.++|++ |.+-+.+++.++++.||-.|+++
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DI 88 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTARPGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDI 88 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcCCCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEe
Confidence 566788999999999888665443110 0 0134443 56777899999999999999998
No 203
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=22.70 E-value=1.1e+03 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=40.2
Q ss_pred HHHcCCCEEEEc---c-cCCccccCCCCCCChhHHHHHHHHHHHHHHc-CCeEEEEcCCC
Q 015181 88 MKDLGMDAYRFS---I-SWPRIFPNGTGEPNPEGISYYNSLIDALLEK-GIQPCVTLYHW 142 (411)
Q Consensus 88 ~~~lG~~~~R~s---i-~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~-gi~p~vtl~h~ 142 (411)
.++-|+-.+=.. + .-.|+.|...|-++.+-++-++++.+.++++ |-+.++=|.|-
T Consensus 440 rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~ 499 (765)
T PRK08255 440 RALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHS 499 (765)
T ss_pred HHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCC
Confidence 444455554222 2 2346666556788999999999999999999 69999999993
No 204
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=22.49 E-value=1.8e+02 Score=32.12 Aligned_cols=64 Identities=27% Similarity=0.498 Sum_probs=42.9
Q ss_pred ccccHHH-HHHHHHcCCCEEEEc-c-cC-Cccc-----------cCC-CCCCC-hhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 78 YHRFKSD-IDLMKDLGMDAYRFS-I-SW-PRIF-----------PNG-TGEPN-PEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 78 y~~~~eD-~~l~~~lG~~~~R~s-i-~W-~ri~-----------p~g-~g~~n-~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
|.-+.|+ +..+|+||.|++.+= | +- +... |.+ -|..+ +.-+.=++.||+++.+.||+++++.-
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 7777777 999999999998842 1 22 2221 221 12222 11144568999999999999999876
Q ss_pred C
Q 015181 141 H 141 (411)
Q Consensus 141 h 141 (411)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 5
No 205
>PRK05474 xylose isomerase; Provisional
Probab=22.07 E-value=9e+02 Score=25.10 Aligned_cols=69 Identities=19% Similarity=0.302 Sum_probs=45.2
Q ss_pred HHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHH----HHHHcCCe-EEEEcCCCCCchHHHHhhCCCCCh
Q 015181 84 DIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLID----ALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWLSR 158 (411)
Q Consensus 84 D~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~----~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~~~ 158 (411)
-++.+.+||+..|-|- =..|.|+| .-..+..+..+++++ .+.+-||+ +++|..-|..|.... |+++||
T Consensus 84 afe~~~kLg~~~~~FH--D~D~~peg--~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 84 AFEFFTKLGVPYYCFH--DVDVAPEG--ASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 3567999999987653 34577774 222223233445544 45677888 566777899997742 889987
Q ss_pred h
Q 015181 159 Q 159 (411)
Q Consensus 159 ~ 159 (411)
+
T Consensus 157 d 157 (437)
T PRK05474 157 D 157 (437)
T ss_pred C
Confidence 6
No 206
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.07 E-value=3.5e+02 Score=25.62 Aligned_cols=90 Identities=17% Similarity=0.261 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCC--EEEEcccCCccccCCCC--CCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCC
Q 015181 82 KSDIDLMKDLGMD--AYRFSISWPRIFPNGTG--EPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 82 ~eD~~l~~~lG~~--~~R~si~W~ri~p~g~g--~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
.+-++.+++.|+- ++=+.+.|..-. +.- .+|.+-..--.++|+.|+++|++.++.+. |.-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~--~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v---------- 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGY--GDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI---------- 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCC--ceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH----------
Confidence 3445555554443 555555555321 122 34444444457999999999999998773 311
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecCCccc
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGF 191 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 191 (411)
.+.|.+..+.+....|= --+|+=+|||..+
T Consensus 91 ---~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 120 (265)
T cd06589 91 ---REWWAEVVKKLLVSLGV-DGFWTDMGEPSPG 120 (265)
T ss_pred ---HHHHHHHHHHhhccCCC-CEEeccCCCCCcC
Confidence 45555554443333332 3567899999754
No 207
>PRK14565 triosephosphate isomerase; Provisional
Probab=21.88 E-value=2.4e+02 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.190 Sum_probs=34.6
Q ss_pred HHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcC
Q 015181 86 DLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLY 140 (411)
Q Consensus 86 ~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~ 140 (411)
.++|++|++..=++-|=.|..= ++-| +.-.+=+..++++||+|++++-
T Consensus 79 ~mLkd~G~~~viiGHSERR~~f---~Etd----~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 79 KMLKECGCSYVILGHSERRSTF---HETD----SDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred HHHHHcCCCEEEECcccccCcC---CcCH----HHHHHHHHHHHHCCCEEEEEcC
Confidence 8999999999998886555321 1222 2234445899999999999983
No 208
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.75 E-value=2.7e+02 Score=30.64 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHH
Q 015181 120 YYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTC 171 (411)
Q Consensus 120 ~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~ 171 (411)
.+..+++.++++|+..=+...|-.++.-+..+||. ..+..++-=.+|++.|
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~ 261 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARIC 261 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 34469999999999999999999999999988875 4344455555555554
No 209
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.57 E-value=2.3e+02 Score=27.01 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYH 141 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h 141 (411)
..+-++.++++|++++.+-+..+|.... ..++.+.. ..+-+.+.++++.......|
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~--~~~~~~~~---~~~~~~~~~~~~~~~~i~~H 68 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRR--PMLEEEVI---DWFKAALETNKNLSQIVLVH 68 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCC--CCCCHHHH---HHHHHHHHHcCCCCcceecc
Confidence 4567899999999999999988887655 23444333 34445578888874333445
No 210
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.54 E-value=2.8e+02 Score=28.31 Aligned_cols=108 Identities=20% Similarity=0.373 Sum_probs=65.4
Q ss_pred cHHHHHHHHHcCCC--EEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCC---CCc---hHHHHh-
Q 015181 81 FKSDIDLMKDLGMD--AYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHW---DLP---QVLEDK- 151 (411)
Q Consensus 81 ~~eD~~l~~~lG~~--~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~---~~P---~~l~~~- 151 (411)
..+-++.+++.|+- ++=+...|..-.. .-.+|.+-+.-.+++++.|+++|++.++.++-+ +-+ ..-..+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 45567777777765 4555556665322 234555555556899999999999988776532 222 111100
Q ss_pred --h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEEecCCccc
Q 015181 152 --Y-----GG----------------WLSRQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGF 191 (411)
Q Consensus 152 --~-----gg----------------~~~~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~ 191 (411)
+ .| |.+++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 12 67888888898888887777653 3577999999975
No 211
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.51 E-value=1.5e+02 Score=31.13 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=47.7
Q ss_pred cHHHHHHHHHcCCCEEEEcccCCccccCC-CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCC
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWPRIFPNG-TGEPNPEGISYYNSLIDALLEKGIQPCVTLYH 141 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~ri~p~g-~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h 141 (411)
-++|++.+.+.|++.+++.++-|.+.-+- -+.--++.++...+.+..+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 48999999999999999999776664321 23333556788889999999999998888754
No 212
>PRK06256 biotin synthase; Validated
Probab=21.39 E-value=1.5e+02 Score=29.17 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHcCCCEEEEcc-cCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 80 RFKSDIDLMKDLGMDAYRFSI-SWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 80 ~~~eD~~l~~~lG~~~~R~si-~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
.-+|.++.|+++|++.+-+++ +=.++.+.-...- .++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~---t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTH---TYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCC---CHHHHHHHHHHHHHcCCeeccCe
Confidence 557889999999999998876 3223334311111 24566789999999999865443
No 213
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=21.22 E-value=1e+02 Score=32.44 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCC-eEEEEcCCCCCchHHHHhhCCCCC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGI-QPCVTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi-~p~vtl~h~~~P~~l~~~~gg~~~ 157 (411)
++-++.|+++|++ |+||.-...-++- -|.. -..+-..+.++.+++.|+ .+-++|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg----------- 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI-IGLPG----------- 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE-eCCCC-----------
Confidence 6779999999999 5555444433321 2221 124556789999999999 5556664 46662
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecCCc
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYWITFNEPH 189 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~ 189 (411)
++.+.|.+-.+.+.+.=-+.+......=+|.
T Consensus 333 -Et~ed~~~tl~~l~~L~pd~isv~~L~i~~g 363 (488)
T PRK08207 333 -EGLEEVKHTLEEIEKLNPESLTVHTLAIKRA 363 (488)
T ss_pred -CCHHHHHHHHHHHHhcCcCEEEEEeceEcCC
Confidence 2345566666655443334555554433343
No 214
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=21.22 E-value=1.6e+02 Score=28.53 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 015181 120 YYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGD 177 (411)
Q Consensus 120 ~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd 177 (411)
-...-|+.|+++|+++++.|--++-- .++.+++..+.|+++ +...|+.
T Consensus 60 ~~~~dI~~cq~~G~KVlLSIGG~~~~-------~~~~s~~~a~~Fa~~---l~~~~~~ 107 (280)
T cd02877 60 QLGADIKHCQSKGKKVLLSIGGAGGS-------YSLSSDADAKDFADY---LWNAFGG 107 (280)
T ss_pred hHHHHHHHHHHCCCEEEEEccCCCCC-------cCCCCHHHHHHHHHH---HHHHhCC
Confidence 34688999999999999998433211 122344445555555 6666654
No 215
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=21.21 E-value=6.9e+02 Score=25.66 Aligned_cols=102 Identities=16% Similarity=0.173 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCC---CCCCChhHHHHHHHHHHHHHHcCCeEE-EEcCCCCCchHHHHhhCCCCC
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNG---TGEPNPEGISYYNSLIDALLEKGIQPC-VTLYHWDLPQVLEDKYGGWLS 157 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g---~g~~n~~~~~~y~~~i~~l~~~gi~p~-vtl~h~~~P~~l~~~~gg~~~ 157 (411)
.+=++.++++|+| |+|+-=..+-++- -|..-. .+--...++.+++.|+.-+ ++|. |.+|.
T Consensus 137 ~e~~~~l~~~GvN--RiSlGVQsf~~~~lk~lgR~h~--~~~~~~a~~~~~~~g~~~in~DLI-yglP~----------- 200 (416)
T COG0635 137 AEKFKALKEAGVN--RISLGVQSFNDEVLKALGRIHD--EEEAKEAVELARKAGFTSINIDLI-YGLPG----------- 200 (416)
T ss_pred HHHHHHHHHcCCC--EEEeccccCCHHHHHHhcCCCC--HHHHHHHHHHHHHcCCCcEEEEee-cCCCC-----------
Confidence 5668999999999 8887543333331 243322 1223588899999998844 4555 45552
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEEecCCcccccccccCCC
Q 015181 158 RQIIEDFEHYAFTCFQEFGDRVKYWITFNEPHGFTLQGYDTGL 200 (411)
Q Consensus 158 ~~~~~~f~~ya~~~~~~~gd~v~~w~t~NEp~~~~~~gy~~g~ 200 (411)
++.+.|.+=.+.+++-=-|++..+...-||+.....-...|.
T Consensus 201 -QT~~~~~~~l~~a~~l~pdhis~y~L~~~p~t~~~~~~~~~~ 242 (416)
T COG0635 201 -QTLESLKEDLEQALELGPDHLSLYSLAIEPGTKFAQRKIKGK 242 (416)
T ss_pred -CCHHHHHHHHHHHHhCCCCEEEEeeeecCCCchhhhhcccCC
Confidence 235556666666665556899999999999976655444444
No 216
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=21.07 E-value=83 Score=25.76 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=39.5
Q ss_pred ccccccHHHHHHHH-HcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 76 DQYHRFKSDIDLMK-DLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 76 d~y~~~~eD~~l~~-~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
+||+-|.+|...++ .+|++...-......-.|. .| +.. ..++..+..|.++|.++.+.=
T Consensus 25 ~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~-~g-fp~---~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 25 DFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPM-AG-FPK---SQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp TEEEEECHHHHHHHHHHTSSSEEEECSSSECEEE-EE-EEG---GGHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEccCHHHHHHhccceeeeccccccccccE-ec-ccH---HHHHHHHHHHHHcCCEEEEEE
Confidence 59999999987666 4888877665433322333 22 222 445788899999999988763
No 217
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=21.04 E-value=9.4e+02 Score=24.92 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=44.3
Q ss_pred HHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHH----HHHHHcCCe-EEEEcCCCCCchHHHHhhCCCCChh
Q 015181 85 IDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLI----DALLEKGIQ-PCVTLYHWDLPQVLEDKYGGWLSRQ 159 (411)
Q Consensus 85 ~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i----~~l~~~gi~-p~vtl~h~~~P~~l~~~~gg~~~~~ 159 (411)
++.|.+||+..|-|- =..|.|+| .-..+..+-.++++ +.+.+-||+ +++|..-|..|.... |+++||+
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg--~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnPd 156 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG--ASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSPD 156 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCCC
Confidence 566899999887653 34677874 22222223334444 445678998 566777899998742 8899886
No 218
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.03 E-value=3.7e+02 Score=28.47 Aligned_cols=93 Identities=11% Similarity=0.027 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc----CCCCCchHHHHh------
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL----YHWDLPQVLEDK------ 151 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl----~h~~~P~~l~~~------ 151 (411)
+.|++...+.|++.+|+....+.+ .-....++.+++.|.....++ .+...|..+.+.
T Consensus 100 ~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 457899999999999998766555 112344555555555442222 122222222110
Q ss_pred ----------hCCCCChhhHHHHHHHHHHHHHHhCCcc-eEEEEecCCcc
Q 015181 152 ----------YGGWLSRQIIEDFEHYAFTCFQEFGDRV-KYWITFNEPHG 190 (411)
Q Consensus 152 ----------~gg~~~~~~~~~f~~ya~~~~~~~gd~v-~~w~t~NEp~~ 190 (411)
.-|...|. ...+.++.+.+++++.+ -...+-|-..+
T Consensus 167 ~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~Gl 213 (499)
T PRK12330 167 MGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGV 213 (499)
T ss_pred cCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCc
Confidence 14555554 45566666677786333 33456666554
No 219
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=20.94 E-value=4.2e+02 Score=25.41 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHHHHHHHHhCCcceEEE
Q 015181 110 TGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYAFTCFQEFGDRVKYWI 183 (411)
Q Consensus 110 ~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~gd~v~~w~ 183 (411)
+|.+|.+++ +++++.+.+.|+.-++.+-+- |-...-+.+...+..+.+.+.-+++++.+.
T Consensus 13 ~g~iD~~~~---~~~i~~l~~~Gv~Gi~~~Gst-----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 13 DGSVDFAAL---EKLIDFQIENGTDAIVVVGTT-----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred CCCcCHHHH---HHHHHHHHHcCCCEEEECccC-----------cccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 689997665 799999999999999887431 111122345667777888887778776443
No 220
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=20.89 E-value=1.1e+02 Score=25.46 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEccc-CCcc-ccCCCCCCChhHHHHHHHHHHHHHHcCCeE
Q 015181 82 KSDIDLMKDLGMDAYRFSIS-WPRI-FPNGTGEPNPEGISYYNSLIDALLEKGIQP 135 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~-W~ri-~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p 135 (411)
++.++.+++.|++.+++|++ -..- ..+--+ .....+...+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999994 3321 111001 1123566779999999999984
No 221
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=20.65 E-value=1.3e+02 Score=28.17 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=43.9
Q ss_pred CcCccccccHHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCch
Q 015181 73 TAVDQYHRFKSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQ 146 (411)
Q Consensus 73 ~a~d~y~~~~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~ 146 (411)
+|.|..+. ++.+++++++|....-+-|-+.-+.-. | .++|+.|++.|.+.+++++-.|+|.
T Consensus 7 lAlD~~~~-~~~l~~~~~~~~~~~~ikvg~~~f~~~--------G----~~~i~~l~~~~~~i~~D~Kl~Di~~ 67 (230)
T PRK00230 7 VALDFPSK-EEALAFLDQLDPAVLFVKVGMELFTAG--------G----PQFVRELKQRGFKVFLDLKLHDIPN 67 (230)
T ss_pred EEcCCCCH-HHHHHHHHhcCCcccEEEEcHHHHHhc--------C----HHHHHHHHhcCCCEEEEeehhhccc
Confidence 45665554 688999999987654455544444322 1 4778999998999999999889885
No 222
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=20.60 E-value=1.3e+02 Score=25.84 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCEEEEcccCC-ccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEc
Q 015181 81 FKSDIDLMKDLGMDAYRFSISWP-RIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTL 139 (411)
Q Consensus 81 ~~eD~~l~~~lG~~~~R~si~W~-ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl 139 (411)
-+++++.|+++|+..+.+|++-. .-.-+-.. -....++.+-+.|+.+++.|+...+.+
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 47899999999999999999533 22111000 011125666788888998888877665
No 223
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=20.48 E-value=87 Score=22.51 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHHHHHHH-HcCCeEEEEcCCCCCchHHHHhhCCCCChhhHHHHHHHH
Q 015181 122 NSLIDALL-EKGIQPCVTLYHWDLPQVLEDKYGGWLSRQIIEDFEHYA 168 (411)
Q Consensus 122 ~~~i~~l~-~~gi~p~vtl~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 168 (411)
++++++|. ..+|+|.+|.. .|-. +.+++.+.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~~-----VW~~------Le~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTST-----VWQK------LEKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHHH-----HHHH------HHHHCHHHHHHhh
Confidence 57888884 66999998874 4532 2345566676663
No 224
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.20 E-value=2.5e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.284 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCCEEEEcccCCccccCCCCCCChhHHHHHHHHHHHHHHcCCeEEEEcCCCCCchHHHH
Q 015181 82 KSDIDLMKDLGMDAYRFSISWPRIFPNGTGEPNPEGISYYNSLIDALLEKGIQPCVTLYHWDLPQVLED 150 (411)
Q Consensus 82 ~eD~~l~~~lG~~~~R~si~W~ri~p~g~g~~n~~~~~~y~~~i~~l~~~gi~p~vtl~h~~~P~~l~~ 150 (411)
++-+++++++|++.+.+..- +.=+++.+++|+++++.+.+++| +|.+|--..|.=++.
T Consensus 109 ~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~R 166 (273)
T PF10566_consen 109 DEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRR 166 (273)
T ss_dssp HHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHH
T ss_pred HHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccc
Confidence 66689999999999998762 23567889999999999999987 566665555655543
Done!