BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015182
(411 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 145/400 (36%), Positives = 207/400 (51%), Gaps = 22/400 (5%)
Query: 1 MPGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDA 60
PG++DVH H ++PGRTEWEGF S DMPLNS+P TI+ E L K
Sbjct: 58 FPGMVDVHVHFNEPGRTEWEGFASGSKSLAAGGVTTYFDMPLNSNPPTITREELDKKRQL 117
Query: 61 AEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
A ++ VD FWGGLVP N L+ L + GV+G K+FM G +DF ++ + +G
Sbjct: 118 ANEKSLVDYRFWGGLVPGNI---DHLQDLHDGGVIGFKAFMSECGTDDFQFSHDETLLKG 174
Query: 121 LSVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIRELLT 178
+ +A L VHAE + + + +E+ L + YS + RP E A+ +L
Sbjct: 175 MKKIAALGSILAVHAESNEMVNALTTIAIEEQRLTVKDYS---EARPIVSELEAVERILR 231
Query: 179 VAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
A+ T +HI H +AK G +++VETCPHYL FS +E +
Sbjct: 232 FAQLT-------CCPIHICHVSSRKVLKRIK-QAKGEGVNVSVETCPHYLLFSLDEFAEI 283
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
KCAPP+R+ E LW+ LM G ID++SSDHSP++P++K + WGGI+
Sbjct: 284 GYLAKCAPPLRERQEVEDLWDGLMAGEIDLISSDHSPSLPQMK--TGKTIFEVWGGIAGC 341
Query: 299 QFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 356
Q L V + G K + L Q+ S PAK G KG I +G A + + +
Sbjct: 342 QNTLAVMLTEGYHKRKMPLTQIVQLLSTEPAKRFGLYPQKGTIQVGAEASFTLIDLNESY 401
Query: 357 ELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
L N ++ +HP IS Y+G+R GKV TI +G VY++
Sbjct: 402 TL-NASDLYYRHP-ISPYVGQRFRGKVKHTICQGKHVYQD 439
>pdb|3E74|A Chain A, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|B Chain B, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|C Chain C, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
pdb|3E74|D Chain D, Crystal Structure Of E. Coli Allantoinase With Iron Ions
At The Metal Center
Length = 473
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/412 (33%), Positives = 195/412 (47%), Gaps = 32/412 (7%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAA 61
PG +D H H+ +PGR+ WEG+ + I+ PLN P+T+ +++LK DAA
Sbjct: 73 PGXVDAHTHISEPGRSHWEGYETGTRAAAKGGITTXIEXPLNQLPATVDRASIELKFDAA 132
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGI----NDFPMTNASHI 117
+ ++ +D GGLV +YN L L GV+G F+ G NDF N
Sbjct: 133 KGKLTIDAAQLGGLV---SYNIDRLHELDEVGVVGFXCFVATCGDRGIDNDFRDVNDWQF 189
Query: 118 KEGLSVLARYKRPLLVHAEM-----EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAA 172
+G L +P+LVH E E G E K E + Y+ +RP E A
Sbjct: 190 FKGAQKLGELGQPVLVHCENALICDELGEE--AKREGRV----TAHDYVASRPVFTEVEA 243
Query: 173 IRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSA 232
IR +L +AK G LH+ H A+ G IT E+CPHY
Sbjct: 244 IRRVLYLAK-------VAGCRLHVCHVSSPEGVEEV-TRARQEGQDITCESCPHYFVLDT 295
Query: 233 EEIPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAW 292
++ + T KC+PPIRD N++ WE L +G ID L SDHSP PE K GN KAW
Sbjct: 296 DQFEEIGTLAKCSPPIRDLENQKGXWEKLFNGEIDCLVSDHSPCPPEXK---AGNIXKAW 352
Query: 293 GGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWE 351
GGI+ LQ V + +K G +L + A + G KG IA G AD V +
Sbjct: 353 GGIAGLQSCXDVXFDEAVQKRGXSLPXFGKLXATNAADIFGLQQKGRIAPGKDADFVFIQ 412
Query: 352 PEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGNHAPAA 403
P + + L ND + +H +S Y+GR + ++ TI RG+++Y P A
Sbjct: 413 PNSSYVLTNDD-LEYRH-KVSPYVGRTIGARITKTILRGDVIYDIEQGFPVA 462
>pdb|3D6N|A Chain A, Crystal Structure Of Aquifex Dihydroorotase Activated By
Aspartate Transcarbamoylase
Length = 422
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 33/398 (8%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAA 61
PG ID+H HL DPG+T E S ++ MP N++P +T + + +
Sbjct: 55 PGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKS 113
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEG 120
+ VG L + + A LK C + +D P+ ++S +++
Sbjct: 114 K-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGSPVMDSSVMRKA 166
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPSWEEAAIRELLT 178
L + ++ P++ H E +K L ++ S L +R P EE I
Sbjct: 167 LELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPEAEEIQIARDGI 219
Query: 179 VAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
+A+ T G H+HI H K G IT E P++L F+ E+ +
Sbjct: 220 LAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNHLLFTEREVLNS 271
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
+ PP+R ++ L E + G ID ++DH+P K L E A GI L
Sbjct: 272 GANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVEF----AMPGIIGL 327
Query: 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
Q LP RK ++L++L ++ PA++ G V G + +G+ AD+ +++P E+ L
Sbjct: 328 QTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKEWIL 386
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 387 NEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 422
>pdb|1XRF|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|A Chain A, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
pdb|1XRT|B Chain B, The Crystal Structure Of A Novel, Latent Dihydroorotase
From Aquifex Aeolicus At 1.7 A Resolution
Length = 467
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/398 (26%), Positives = 175/398 (43%), Gaps = 33/398 (8%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAA 61
PG ID+H HL DPG+T E S ++ MP N++P +T + + +
Sbjct: 100 PGFIDIHVHLRDPGQTYKEDIESGSRCAVAGGFTTIVCMP-NTNPPIDNTTVVNYILQKS 158
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPMTNASHIKEG 120
+ VG L + + A LK C + +D P+ ++S +++
Sbjct: 159 K-----SVGLCRVLPTGTITKGRKGKEI--ADFYSLKEAGCVAFTDDGSPVMDSSVMRKA 211
Query: 121 LSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL--KTRPPSWEEAAIRELLT 178
L + ++ P++ H E +K L ++ S L +R P EE I
Sbjct: 212 LELASQLGVPIMDHCEDDK-------LAYGVINEGEVSALLGLSSRAPEAEEIQIARDGI 264
Query: 179 VAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDG 238
+A+ T G H+HI H K G IT E P++L F+ E+ +
Sbjct: 265 LAQRT-------GGHVHIQHVSTKLSLEIIEF-FKEKGVKITCEVNPNHLLFTEREVLNS 316
Query: 239 DTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSL 298
+ PP+R ++ L E + G ID ++DH+P K L E A GI L
Sbjct: 317 GANARVNPPLRKKEDRLALIEGVKRGIIDCFATDHAPHQTFEKELVE----FAMPGIIGL 372
Query: 299 QFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFEL 358
Q LP RK ++L++L ++ PA++ G V G + +G+ AD+ +++P E+ L
Sbjct: 373 QTALPSALELYRKGIISLKKLIEMFTINPARIIG-VDLGTLKLGSPADITIFDPNKEWIL 431
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
+ + ++ + G+ L GKV+ TI G +VYK+
Sbjct: 432 NEE--TNLSKSRNTPLWGKVLKGKVIYTIKDGKMVYKD 467
>pdb|1YNY|A Chain A, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
pdb|1YNY|B Chain B, Molecular Structure Of D-Hydantoinase From A Bacillus Sp.
Ar9: Evidence For Mercury Inhibition
Length = 461
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 112/411 (27%), Positives = 184/411 (44%), Gaps = 36/411 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HLD P G + F + ++D L T E+LK +
Sbjct: 51 IPGGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCL-----TKKGESLKSAI 105
Query: 59 ----DAAEKRIYVDVGFWGGLVPENAYNASALEALLNA-GVLGLKSFMCPSGINDFPMTN 113
+ A + +D GF + N LE+++++ G+ LK FM N F +
Sbjct: 106 ATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYK--NVFQADD 163
Query: 114 ASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTRPPSWE-EA 171
+ K +++ + LV E G + + + Y TRPP E EA
Sbjct: 164 ETLFK---TLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEA 220
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF- 230
R + A G+ L++VH EA+ G ++ ETCP YLA
Sbjct: 221 TGRAIALTA--------LAGSQLYVVHVSCASAVQRIA-EAREKGWNVYGETCPQYLALD 271
Query: 231 -SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGN 287
S + PD + ++ +PP+R+ N+E LW AL +G + + SDH P K L G+
Sbjct: 272 VSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGD 331
Query: 288 FLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHA 345
F K G ++ L + +S G + G ++L Q S + AKL G KG IA+G+ A
Sbjct: 332 FTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDA 391
Query: 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
D+V+++P + L + H + + + G + G+V++ +SRG+ V ++
Sbjct: 392 DIVIFDPHVKRTLSVE--THHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRD 440
>pdb|1GKR|A Chain A, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|B Chain B, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|C Chain C, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
pdb|1GKR|D Chain D, L-Hydantoinase (Dihydropyrimidinase) From Arthrobacter
Aurescens
Length = 458
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 107/405 (26%), Positives = 180/405 (44%), Gaps = 28/405 (6%)
Query: 1 MPGLIDVHAHLDDPG-RTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVD 59
MPG++D H H+ D + + F +I+MP+ P+T L+ K
Sbjct: 53 MPGVVDEHVHIIDMDLKNRYGRFELDSESAAVGGITTIIEMPITFPPTTTLDAFLEKKKQ 112
Query: 60 AAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKE 119
A + R+ VD +GG VP N + + +AG +G S M S F + + E
Sbjct: 113 AGQ-RLKVDFALYGGGVPGNL---PEIRKMHDAGAVGFXSMMAASVPGMFDAVSDGELFE 168
Query: 120 GLSVLARYKRPLLVHAEME---KGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+A ++VHAE E + ++ +K + + Y ++P E AI+
Sbjct: 169 IFQEIAACGSVIVVHAENETIIQALQKQIK----AAGGKDMAAYEASQPVFQENEAIQRA 224
Query: 177 LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIP 236
L + K+ G L ++H +A++ G + E+ P YL + ++
Sbjct: 225 LLLQKEA-------GCRLIVLHVSNPDGVELIH-QAQSEGQDVHCESGPQYLNITTDDAE 276
Query: 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
K APP+R A +LWE L +G ID L SDH E K + KA G
Sbjct: 277 RIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSDHGGHPVEDKEPGWKDVWKAGNGAL 336
Query: 297 SLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEA 354
L+ LP+ + G G ++LE+L E+PAKL G KG + +G+ ADL++ + +
Sbjct: 337 GLETSLPMMLTNGVNKGRLSLERLVEVMCEKPAKLFGIYPQKGTLQVGSDADLLILDLDI 396
Query: 355 EFELDNDH--PVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
+ ++D +H P + G ++G + T+ RG +V ++G
Sbjct: 397 DTKVDASQFRSLHKYSP----FDGMPVTGAPVLTMVRGTVVAEKG 437
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 94/364 (25%), Positives = 152/364 (41%), Gaps = 34/364 (9%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAA 61
PGL+DVH HL +PG E + + MP N+ P E ++ +
Sbjct: 53 PGLVDVHVHLREPGGEHKETIETGTLAAAKGGFTTICAMP-NTRPVPDCREHMEDLQNRI 111
Query: 62 EKRIYVDVGFWGGL-VPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEG 120
+++ +V+V +G + V + + E L G + + +AS +
Sbjct: 112 KEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTD-------DGVGVQDASMMLAA 164
Query: 121 LSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+ A+ ++ H E + KG K S L P E I
Sbjct: 165 MKRAAKLNMAVVAHCEENTLINKGCVHEGKF--------SEKHGLNGIPSVCESVHIARD 216
Query: 177 LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIP 236
+ +A+ A H H+ H +AK G +T E PH+L ++IP
Sbjct: 217 ILLAE-------AADCHYHVCHVSTKGSVRVIR-DAKRAGIKVTAEVTPHHLVLCEDDIP 268
Query: 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGIS 296
D FK PP+R + E L E L+DG IDM+++DH+P E K +A GI+
Sbjct: 269 SADPNFKMNPPLRGKEDHEALIEGLLDGTIDMIATDHAPHTAEEK---AQGIERAPFGIT 325
Query: 297 SLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAE 355
+ P+ ++ K G +TLEQL + +E+PA G + G + G AD+ + + E E
Sbjct: 326 GFETAFPLLYTNLVKKGIITLEQLIQFLTEKPADTFG-LEAGRLKEGRTADITIIDLEQE 384
Query: 356 FELD 359
E+D
Sbjct: 385 EEID 388
>pdb|3SFW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
pdb|3SFW|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Brevibacillus Agri Nchu1002
Length = 461
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 112/408 (27%), Positives = 180/408 (44%), Gaps = 32/408 (7%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 58
+PG ID H HLD P G + F + ++D L S ++ +
Sbjct: 51 LPGGIDPHTHLDMPFGGTVTSDNFFTGTKAAAFGGTTSIVDFCLTSKGESLHSAIATWHE 110
Query: 59 DAAEKRIYVDVGFWGGLVPENAYNASALEALLN-AGVLGLKSFMCPSGINDFPMTNASHI 117
A K + +D GF + N + LE+++N G+ L FM + M + +
Sbjct: 111 KARGKAV-IDYGFHLMVSDANDHVLEELESVVNNEGITSLXVFMAYKNV---LMADDETL 166
Query: 118 KEGLSVLARYKRPLLVHAEMEKGSERHVK--LEDDTLDTRSYSTYLKTRPPSWE-EAAIR 174
+ L + VHAE + K L + D Y Y TRPP E EA R
Sbjct: 167 FKTLIRAKELGALVQVHAENGDVLDYLTKQALAEGNTDP-IYHAY--TRPPEAEGEATGR 223
Query: 175 EL-LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF--S 231
+ LT D A L++VH EA+ G ++ ETCP YL +
Sbjct: 224 AIALTALAD---------AQLYVVHVSCADAVRRIA-EAREKGWNVYGETCPQYLVLDIT 273
Query: 232 AEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFL 289
A E PD + ++ +PP+R+ N++ LW AL +G + + SDH P K L +F
Sbjct: 274 ALEKPDFEGAKYVWSPPLREKWNQDVLWSALKNGILQTVGSDHCPFNFSGQKELGRRDFT 333
Query: 290 KAWGGISSLQFVLPVTWSYG-RKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADL 347
K G ++ + + +S G RK ++L Q S + AKL G KG IA+G+ AD+
Sbjct: 334 KIPNGGPIIEDRMTILFSEGVRKGKISLNQFVDITSTKVAKLFGMFPQKGTIAVGSDADI 393
Query: 348 VVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
V+++P + + + H + + + G ++ G V++ +SRG V +
Sbjct: 394 VLFDPTVQRTISVE--THHMNVDYNPFEGMQVHGDVISVLSRGAFVVR 439
>pdb|1K1D|A Chain A, Crystal Structure Of D-Hydantoinase
pdb|1K1D|B Chain B, Crystal Structure Of D-Hydantoinase
pdb|1K1D|C Chain C, Crystal Structure Of D-Hydantoinase
pdb|1K1D|D Chain D, Crystal Structure Of D-Hydantoinase
pdb|1K1D|E Chain E, Crystal Structure Of D-Hydantoinase
pdb|1K1D|F Chain F, Crystal Structure Of D-Hydantoinase
pdb|1K1D|G Chain G, Crystal Structure Of D-Hydantoinase
pdb|1K1D|H Chain H, Crystal Structure Of D-Hydantoinase
Length = 460
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 111/411 (27%), Positives = 171/411 (41%), Gaps = 36/411 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNS--DPSTISTETLKL 56
PG ID H HLD P G + F S +ID L + +P + ET
Sbjct: 51 FPGGIDPHTHLDMPLGGTVTKDDFESGTIAAAFGGTTTIIDFCLTNKGEPLKKAIETWHN 110
Query: 57 KVDAAEKRIYVDVGFWGGLVPENAYNASALE----ALLNAGVLGLKSFMCPSGINDFPMT 112
K A + +D GF + + LE L G+ L FM N F
Sbjct: 111 K---ANGKAVIDYGFH---LMISEITDDVLEELPKVLEEEGITSLXVFMAYK--NVFQAD 162
Query: 113 NASHIKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTY-LKTRPPSWEEA 171
+ + ++LA + LV E G + D + Y TRPP E
Sbjct: 163 DGTLY---CTLLAAKELGALVMVHAENGDVIDYLTKKALADGNTDPIYHALTRPPELEGE 219
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF- 230
A + + G+ L++VH EA+ G + ETCP YL
Sbjct: 220 ATGRACQLTE-------LAGSQLYVVHVTCAQAVEKIA-EARNKGLDVWGETCPQYLVLD 271
Query: 231 -SAEEIPDGD-TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDH-SPTVPELKLLDEGN 287
S E P+ + ++ +PP+R+ ++E LW AL +G + L SD S K L G+
Sbjct: 272 QSYLEKPNFEGAKYVWSPPLREKWHQEVLWNALKNGQLQTLGSDQCSFDFKGQKELGRGD 331
Query: 288 FLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHA 345
F K G ++ + + +S G K G +TL Q S R AKL G KG I +G+ A
Sbjct: 332 FTKIPNGGPIIEDRVSILFSEGVKKGRITLNQFVDIVSTRIAKLFGLFPKKGTIVVGSDA 391
Query: 346 DLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
DLV+++P E + + H +A+ G +++G+ ++ + RG V ++
Sbjct: 392 DLVIFDPNIERVISAE--THHMAVDYNAFEGMKVTGEPVSVLCRGEFVVRD 440
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 21/320 (6%)
Query: 86 LEALLNAGVLGLKSFMCPSGINDFPMTNASHIKEGLSVLARYKRPLLVHAEMEKGSERHV 145
LE L + G+ FM G+N M + + + L + ++VHAE G
Sbjct: 136 LEVLPDLGITSFXVFMAYRGMN---MIDDVTLLKTLDKAVKTGSLVMVHAE--NGDAADY 190
Query: 146 KLEDDTLDTRSYSTY-LKTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXX 204
+ + ++ Y +RPP E A L +A+ A ++IVH
Sbjct: 191 LRDKFVAEGKTAPIYHALSRPPRVEAEATARALALAEIVN-------APIYIVHVTCEES 243
Query: 205 XXXXXMEAKTNGDSITVETCPHYLAFSAEEI--PDGD-TRFKCAPPIRDAANKEKLWEAL 261
M AK+ G ETC HYL + E++ PD + ++ PP R + + LW AL
Sbjct: 244 LEEV-MRAKSRGVRALAETCTHYLYLTKEDLERPDFEGAKYVFTPPARAKKDHDVLWNAL 302
Query: 262 MDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLA 320
+G + +SSDH K +F G ++ L + + + ++L Q
Sbjct: 303 RNGVFETVSSDHCSWLFKGHKDRGRNDFRAIPNGAPGVEERLMMVYQGVNEGRISLTQFV 362
Query: 321 SWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRL 379
+ RPAK+ G KG IA+G+ AD+V+W+PEAE + + S+Y G ++
Sbjct: 363 ELVATRPAKVFGMFPQKGTIAVGSDADIVLWDPEAEMVI--EQTAMHNAMDYSSYEGHKV 420
Query: 380 SGKVLATISRGNLVYKEGNH 399
G + RG ++ EG++
Sbjct: 421 KGVPKTVLLRGKVIVDEGSY 440
>pdb|3GRI|A Chain A, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
pdb|3GRI|B Chain B, The Crystal Structure Of A Dihydroorotase From
Staphylococcus Aureus
Length = 424
Score = 85.1 bits (209), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 92/402 (22%), Positives = 161/402 (40%), Gaps = 40/402 (9%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETL----KLK 57
PG +DVH HL +PG E + + P N+ P S E KL
Sbjct: 52 PGFVDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPXP-NTRPVPDSVEHFEALQKLI 110
Query: 58 VDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTNASHI 117
D A+ R+ + + + AL+ G G+ + AS
Sbjct: 111 DDNAQVRV---LPYASITTRQLGKELVDFPALVKEGAFAFTD----DGVG---VQTASXX 160
Query: 118 KEGLSVLARYKRPLLVHAE---MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIR 174
EG A+ + ++ H E + G H RS + P E I
Sbjct: 161 YEGXIEAAKVNKAIVAHCEDNSLIYGGAXHEG-------KRSKELGIPGIPNICESVQIA 213
Query: 175 ELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEE 234
+ +A+ A G H H+ H +AK G +T E PH+L + ++
Sbjct: 214 RDVLLAE-------AAGCHYHVCHVSTKESVRVI-RDAKRAGIHVTAEVTPHHLLLTEDD 265
Query: 235 IPDGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGG 294
IP + +K PP+R ++E L E L+DG ID +++DH+P + K KA G
Sbjct: 266 IPGNNAIYKXNPPLRSTEDREALLEGLLDGTIDCIATDHAPHARDEKAQPXE---KAPFG 322
Query: 295 ISSLQFVLPVTWSYGRKYGV-TLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
I + P+ +++ K G TL+QL + + +P + + G + +ADL + + +
Sbjct: 323 IVGSETAFPLLYTHFVKNGDWTLQQLVDYLTIKPCETF-NLEYGTLKENGYADLTIIDLD 381
Query: 354 AEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
+E E+ + + + ++G ++ G + T G + ++
Sbjct: 382 SEQEIKGED--FLSKADNTPFIGYKVYGNPILTXVEGEVKFE 421
>pdb|3DC8|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
pdb|3DC8|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Sinorhizobium Meliloti
Length = 490
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/417 (24%), Positives = 164/417 (39%), Gaps = 45/417 (10%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 58
MPG ID H HL+ P G + F S ++D L S P E L +
Sbjct: 49 MPGGIDPHTHLEMPFMGTYSSDDFESGTRAALAGGTTMVVDFALPS-PGQSLLEALTMW- 106
Query: 59 DAAEKRIYVDVGF------WGGLVPENAYNASALEALL-NAGVLGLKSFMCPSG---IND 108
D R D F WG E +N +E ++ + G+ FM G ++D
Sbjct: 107 DNKSTRANCDYSFHMAITWWG----EQVFNE--METIVKDKGINTFXHFMAYKGALMVDD 160
Query: 109 FPMTNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPS 167
M ++ L L LVHAE + ++ KL + Y +RP
Sbjct: 161 DEMFSSFQRCAALGALP------LVHAENGDVVAQLQAKLLAEGNSGPEAHAY--SRPAE 212
Query: 168 WEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHY 227
E A + +A G ++IVH A+ G + E +
Sbjct: 213 VEGEAANRAIMIAD-------MAGCPVYIVHTSCEQAHEAIR-RARAKGMRVFGEPLIQH 264
Query: 228 LAFSAEEIPDGD----TRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
L E D D R +PP R+ +++ LW L G + ++++DH E K
Sbjct: 265 LTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASGSLQVVATDHCAFTTEQKRF 324
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAI 341
G+F + G L+ +P+ W+YG G +T+ + + S AK+ KGAI +
Sbjct: 325 GVGDFTRIPNGTGGLEDRMPMLWTYGVATGRITMNEFVAVTSTNIAKILNIYPKKGAILV 384
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
G ADLVVW+P+ + + + G+ ++G T++RG + +EG
Sbjct: 385 GADADLVVWDPKRSKTISAK--TQQSAIDYNVFEGKTVTGLPRFTLTRGVVSIEEGT 439
>pdb|2Z00|A Chain A, Crystal Structure Of Dihydroorotase From Thermus
Thermophilus
Length = 426
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 153/359 (42%), Gaps = 30/359 (8%)
Query: 2 PGLIDVHAHLDDPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKVDAA 61
PG +D+HAHL +PG E S L+ P N+ P + E ++ + A
Sbjct: 49 PGFLDLHAHLREPGEEVKEDLFSGLLAAVRGGYTDLVSXP-NTKPPVDTPEAVRALKEKA 107
Query: 62 EKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSG---INDFPMTN--ASH 116
+ L + A+AL L + +G + D TN A
Sbjct: 108 K-----------ALGLARLHPAAALTEKQEGKTLTPAGLLREAGAVLLTDDGRTNEDAGV 156
Query: 117 IKEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEEAAIREL 176
+ GL A P+ VHAE + G R+ D L + L PP E A I
Sbjct: 157 LAAGLLXAAPLGLPVAVHAE-DAGLRRNGVXNDGPL---ADLLGLPGNPPEAEAARIARD 212
Query: 177 LTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIP 236
L V + PA LH+ H EAK G +T E PH+L + E +
Sbjct: 213 LEVLRYALRRSPAT-PRLHVQHLSTKRGLELV-REAKRAGLPVTAEATPHHLTLTEEALR 270
Query: 237 DGDTRFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSP-TVPELKLLDEGNFLKAWGGI 295
D FK APP+R ++E L E L+DG +D +++DH+P T+ E E + L+A GI
Sbjct: 271 TFDPLFKVAPPLRGEEDREALLEGLLDGTLDAIATDHAPHTLAE----KEKDLLRAPFGI 326
Query: 296 SSLQFVLPVTWS-YGRKYGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
SL+ P+ ++ K G L++L +++ P ++ G + + G A LV+ P+
Sbjct: 327 PSLEVAFPLLYTELHLKRGFPLQRLVELFTDGPRRVLG-LPPLHLEEGAEASLVLLSPK 384
>pdb|1GKP|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|E Chain E, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKP|F Chain F, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group C2221
pdb|1GKQ|A Chain A, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|B Chain B, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|C Chain C, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
pdb|1GKQ|D Chain D, D-Hydantoinase (Dihydropyrimidinase) From Thermus Sp. In
Space Group P212121
Length = 458
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 241 RFKCAPPIRDAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
++ +PP+RD N++ LW+AL G ID + +DH P E KLL + F GI +++
Sbjct: 283 KYIMSPPLRDKRNQKVLWDALAQGFIDTVGTDHCPFDTEQKLLGKEAFTAIPNGIPAIED 342
Query: 301 VLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFEL 358
+ + ++YG G + + + S + AKL G KG IA+G+ ADLVV++P+ +
Sbjct: 343 RVNLLYTYGVSRGRLDIHRFVDAASTKAAKLFGLFPRKGTIAVGSDADLVVYDPQYRGTI 402
Query: 359 DNDHPVHMKHPS--ISAYLGRRLSGKVLATISRGNLVYKEGN 398
V +H + + + G + G+ RG + ++G
Sbjct: 403 S----VKTQHVNNDYNGFEGFEIDGRPSVVTVRGKVAVRDGQ 440
>pdb|2GWN|A Chain A, The Structure Of Putative Dihydroorotase From
Porphyromonas Gingivalis
Length = 452
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 5/209 (2%)
Query: 192 AHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFSAEEIPDGDTRFKCAPPIRDA 251
A LHI+H + T IT E C H+L FS + R K P I+
Sbjct: 236 ARLHILHLSTEKELSLFRNDIPTAQKRITSEVCVHHLWFSDTDYGRLGNRIKWNPAIKKE 295
Query: 252 ANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRK 311
+++E L A+ +G ID++++DH+P + K EG+ L+A G +Q L +
Sbjct: 296 SDREALRAAVRNGRIDIIATDHAPHLLREK---EGSCLQAASGGPLVQHSLLALLELCNQ 352
Query: 312 YGVTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSI 371
++E++ S + PA L +G I G +ADLV+ +P + + D+ + +
Sbjct: 353 GIFSIEEIVSKTAHIPATLFAIEKRGYIRPGYYADLVLVDPSSPHTVSADNILSL--CGW 410
Query: 372 SAYLGRRLSGKVLATISRGNLVYKEGNHA 400
S + G S V T G L Y +G A
Sbjct: 411 SPFEGFTFSHSVAYTFVNGCLAYAKGRLA 439
>pdb|2FTY|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FTY|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri
pdb|2FVK|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVK|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Substrate
Dihydrouracil
pdb|2FVM|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|B Chain B, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|C Chain C, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
pdb|2FVM|D Chain D, Crystal Structure Of Dihydropyrimidinase From
Saccharomyces Kluyveri In Complex With The Reaction
Product N-carbamyl-beta-alanine
Length = 559
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 112/469 (23%), Positives = 177/469 (37%), Gaps = 91/469 (19%)
Query: 2 PGLIDVHAHLDDPGR-------TEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETL 54
PG ID H H+D+P + T S PS ++ E++
Sbjct: 55 PGGIDAHVHVDEPLKLLGDVVDTMEHATRSAVAGGTTTVVAFSTQDVSKKGPSALA-ESV 113
Query: 55 KLKVDA-AEKRIYVDVGFWGGLVPENAYNASALEAL---LNA-----GVLGLKSFMCPSG 105
KL VD +E+ +Y D G L + A E L L A GV + FM G
Sbjct: 114 KLDVDEYSEQTLYCDYGLHLILFQIEKPSVEARELLDVQLQAAYNDYGVSSVXMFMTYPG 173
Query: 106 --INDFPMTNASHI--KEGLSVLARYKRPLLVHAEMEKGSERHVKLEDDTLDTRSYSTYL 161
I+D+ + +A + K G + + + +V +E LE+ L Y +
Sbjct: 174 LQISDYDIMSAMYATRKNGFTTMLHAENGDMVKWMIEA-------LEEQGLTDAYY--HG 224
Query: 162 KTRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITV 221
+RP E A +T+A T D P H+ +A+T G +
Sbjct: 225 VSRPSIVEGEATNRAITLA--TTMDTPILFVHV------SSPQAAEVIKQAQTKGLKVYA 276
Query: 222 ETCPHYL-------------------------AFSAEEIPDGDTRFK-----CAPPIRDA 251
ETCP Y + S + D RF C+PPIR
Sbjct: 277 ETCPQYALLSDAITRCHHHGEVESYGVGIDLSSISESPFTNPDDRFIGSKYICSPPIRPE 336
Query: 252 ANKEKLWEALMDGHIDMLSSDH--------SPTVPELKLLD-----EGNFLKAWGGISSL 298
++ +W+ + +G ++ SDH + T + + D G F G+ +
Sbjct: 337 GTQKSIWKGMNNGTFTIVGSDHCSYNYYEKTSTASKHRAFDPENNKNGEFRYIPNGLPGV 396
Query: 299 QFVLPVTWSYGRKYG--VTLEQLASWWSERPAKLAGQV-SKGAIAIG-NHADLVVWEPEA 354
+P+ + YG G ++ +L PAK+ G KG+I G + ADLV+W P+
Sbjct: 397 CTRMPLLYDYGYLRGNLTSMMKLVEIQCTNPAKVYGMYPQKGSILPGVSDADLVIWYPDD 456
Query: 355 EFELDNDHP-----VHMKHPS-ISAYLGRRLSGKVLATISRGNLVYKEG 397
+ N P M+H + + G + TI +G +VYKEG
Sbjct: 457 SKKEYNSKPKLITNKLMEHNCDYTPFEGIEIKNWPRYTIVKGKIVYKEG 505
>pdb|4B91|A Chain A, Crystal Structure Of Truncated Human Crmp-5
pdb|4B91|B Chain B, Crystal Structure Of Truncated Human Crmp-5
pdb|4B92|A Chain A, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
pdb|4B92|B Chain B, Crystal Structure Of Truncated Human Crmp-5 Soaked With Zn
Length = 484
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 163 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 222
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 220 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 271
Query: 223 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 277
T + + D + PP+R D L L + +++++SDH P
Sbjct: 272 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 331
Query: 278 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 335
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 332 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 391
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
KG I G AD+VVW+PEA + V + + Y R G L TISRG +VY+
Sbjct: 392 KGRIIPGADADVVVWDPEATKTISASTQV--QGGDFNLYENMRCHGVPLVTISRGRVVYE 449
Query: 396 EG 397
G
Sbjct: 450 NG 451
>pdb|4B90|A Chain A, Crystal Structure Of Wt Human Crmp-5
pdb|4B90|B Chain B, Crystal Structure Of Wt Human Crmp-5
Length = 586
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 17/242 (7%)
Query: 163 TRPPSWEEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVE 222
+RP E A ++T+A RT P +++V+ AK G + E
Sbjct: 241 SRPEELEAEATHRVITIAN--RTHCP-----IYLVNVSSISAGDVIA-AAKMQGKVVLAE 292
Query: 223 TCPHYLAFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTV 277
T + + D + PP+R D L L + +++++SDH P
Sbjct: 293 TTTAHATLTGLHYYHQDWSHAAAYVTVPPLRLDTNTSTYLMSLLANDTLNIVASDHRPFT 352
Query: 278 PELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-S 335
+ K + + +F K G+S +Q + V W G G E + + S AKL
Sbjct: 353 TKQKAMGKEDFTKIPHGVSGVQDRMSVIWERGVVGGKMDENRFVAVTSSNAAKLLNLYPR 412
Query: 336 KGAIAIGNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYK 395
KG I G AD+VVW+PEA + ++ + Y R G L TISRG +VY+
Sbjct: 413 KGRIIPGADADVVVWDPEATKTISAS--TQVQGGDFNLYENMRCHGVPLVTISRGRVVYE 470
Query: 396 EG 397
G
Sbjct: 471 NG 472
>pdb|2FTW|A Chain A, Crystal Structure Of Dihydropyrimidinase From
Dictyostelium Discoideum
Length = 521
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 242 FKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQF 300
F PPIR D K L + L G +D + +D+ + K + + +F K G++ ++
Sbjct: 294 FVMGPPIRPDPRTKGVLMDYLARGDLDCVGTDNCTFCADQKAMGKDDFTKIPNGVNGVED 353
Query: 301 VLPVTWSYGRKYG-VTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEFEL 358
+ + W G G +T Q S A++ KG I +G D+V+W+P +
Sbjct: 354 RMSIVWENGVNTGKLTWCQFVRATSSERARIFNIYPRKGRIDVGCDGDIVIWDPNQSKTI 413
Query: 359 DNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKE 396
D H + + G +++G + TI GN+V+ +
Sbjct: 414 SKD--THHHAVDFNIFEGIKVTGIAVTTIVAGNIVWSD 449
>pdb|2VR2|A Chain A, Human Dihydropyrimidinase
Length = 541
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 92/416 (22%), Positives = 157/416 (37%), Gaps = 43/416 (10%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTI--STETLKL 56
+PG ID H H+ P G + F +ID + ++ + ET +
Sbjct: 82 LPGGIDTHTHMQFPFMGSRSIDDFHQGTKAALSGGTTMIIDFAIPQKGGSLIEAFETWRS 141
Query: 57 KVD---AAEKRIYVDVGFWGGLVPENAYNASALEALL-NAGVLGLKSFMCPSGINDFPMT 112
D + ++V V +W V E ++ L+ + GV K FM D M
Sbjct: 142 WADPKVCCDYSLHVAVTWWSDQVKEE------MKILVQDKGVNSFKMFM---AYKDLYMV 192
Query: 113 NASHIKEGLSVLARYKRPLLVHAE----MEKGSERHVKLEDDTLDTRSYSTYLKTRPPSW 168
+ E S VHAE + +G+++ + L + RP +
Sbjct: 193 TDLELYEAFSRCKEIGAIAQVHAENGDLIAEGAKKML-----ALGITGPEGHELCRPEAV 247
Query: 169 EEAAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYL 228
E A +T+A A L+IVH +A+ +G + E L
Sbjct: 248 EAEATLRAITIAS-------AVNCPLYIVHVMSKSAAKVIA-DARRDGKVVYGEPIAASL 299
Query: 229 AFSAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLL 283
+ + PP+R D + + L L + + +D+ K L
Sbjct: 300 GTDGTHYWNKEWHHAAHHVMGPPLRPDPSTPDFLMNLLANDDLTTTGTDNCTFNTCQKAL 359
Query: 284 DEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAI 341
+ +F K G++ ++ + V W G G E + + S AK+ KG IA+
Sbjct: 360 GKDDFTKIPNGVNGVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPRKGRIAV 419
Query: 342 GNHADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
G+ AD+V+W+P+ + H + + + + G G L TISRG +VY+ G
Sbjct: 420 GSDADIVIWDPKGTRTISAK--THHQAVNFNIFEGMVCHGVPLVTISRGKVVYEAG 473
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 153/414 (36%), Gaps = 37/414 (8%)
Query: 1 MPGLIDVHAHLDDP--GRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 58
+PG IDV+ +L P G T + F +ID + S++ T K
Sbjct: 59 IPGGIDVNTYLQKPSQGMTSADDFFQGTKAALAGGTTMIIDHVVPEPGSSLLTSFEKWHE 118
Query: 59 DAAEKR-----IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGINDFPMTN 113
A K ++VD+ W V E LE L+ G+ SF D +
Sbjct: 119 AADTKSCCDYSLHVDITSWYDGVREE------LEVLVQDK--GVNSFQVYMAYKDLYQMS 170
Query: 114 ASHIKEGLSVLARYKRPLLVHAEMEK--GSERHVKLEDDTLDTRSYSTYLKTRPPSWEEA 171
S + E + L +LVHAE E+ LE ++ +RP E
Sbjct: 171 DSQLYEAFTFLKGLGAVILVHAENGDLIAQEQKRILEMGITGPEGHAL---SRPEELEAE 227
Query: 172 AIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAFS 231
A+ + +A R + P ++I + A+ G + E L
Sbjct: 228 AVFRAIAIAG--RINCP-----VYITKVMSKSAADIIAL-ARKKGPLVFGEPIAASLGTD 279
Query: 232 AEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDEG 286
+ F +PP+ D + L L G + + S H P K + +
Sbjct: 280 GTHYWSKNWAKAAAFVTSPPLSPDPTTPDYLTSLLACGDLQVTGSGHCPYSTAQKAVGKD 339
Query: 287 NFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAIGNH 344
NF G++ ++ + V W G E Q + S AK+ KG IA+G+
Sbjct: 340 NFTLIPEGVNGIEERMTVVWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSD 399
Query: 345 ADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEGN 398
AD+V+W+P+ + H + + G G L IS+G +V+++GN
Sbjct: 400 ADVVIWDPDKMKTITAKS--HKSTVEYNIFEGMECHGSPLVVISQGKIVFEDGN 451
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 95/414 (22%), Positives = 156/414 (37%), Gaps = 39/414 (9%)
Query: 1 MPGLIDVHAHLD--DPGRTEWEGFPSXXXXXXXXXXXXLIDMPLNSDPSTISTETLKLKV 58
+PG IDVH D G T + F +ID + +P T
Sbjct: 77 IPGGIDVHTRFQMPDQGMTSADDFFQGTKAALAGGTTMIIDHVV-PEPGTSLLAAFDQWR 135
Query: 59 DAAEKR------IYVDVGFWGGLVPENAYNASALEALLNAGVLGLKSFMCPSGIND-FPM 111
+ A+ + ++VD+ W + E +EAL+ G+ SF+ D F +
Sbjct: 136 EWADSKSCCDYSLHVDISEWHKGIQEE------MEALVKDH--GVNSFLVYMAFKDRFQL 187
Query: 112 TNASHIKEGLSVLARYKRPLLVHAEM-EKGSERHVKLEDDTLDTRSYSTYLKTRPPSWEE 170
T+ I E LSV+ VHAE + +E ++ D L ++ +RP E
Sbjct: 188 TDC-QIYEVLSVIRDIGAIAQVHAENGDIIAEEQQRILD--LGITGPEGHVLSRPEEVEA 244
Query: 171 AAIRELLTVAKDTRTDGPAEGAHLHIVHXXXXXXXXXXXMEAKTNGDSITVETCPHYLAF 230
A+ +T+A +T+ P L+I +A+ G + E L
Sbjct: 245 EAVNRAITIAN--QTNCP-----LYITKVMSKSSAEVIA-QARKKGTVVYGEPITASLGT 296
Query: 231 SAEEIPDGD----TRFKCAPPIR-DAANKEKLWEALMDGHIDMLSSDHSPTVPELKLLDE 285
+ F +PP+ D + L L G + + S H K + +
Sbjct: 297 DGSHYWSKNWAKAAAFVTSPPLSPDPTTPDFLNSLLSCGDLQVTGSAHCTFNTAQKAVGK 356
Query: 286 GNFLKAWGGISSLQFVLPVTWSYGRKYGVTLE-QLASWWSERPAKLAGQV-SKGAIAIGN 343
NF G + + + V W G E Q + S AK+ KG IA+G+
Sbjct: 357 DNFTLIPEGTNGTEERMSVIWDKAVVTGKMDENQFVAVTSTNAAKVFNLYPRKGRIAVGS 416
Query: 344 HADLVVWEPEAEFELDNDHPVHMKHPSISAYLGRRLSGKVLATISRGNLVYKEG 397
ADLV+W+P++ + H + + G G L IS+G +V ++G
Sbjct: 417 DADLVIWDPDSVKTI--SAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLEDG 468
>pdb|3OOQ|A Chain A, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|B Chain B, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|C Chain C, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|D Chain D, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|E Chain E, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|F Chain F, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|G Chain G, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|H Chain H, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|I Chain I, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
pdb|3OOQ|J Chain J, Crystal Structure Of Amidohydrolase From Thermotoga
Maritima Msb8
Length = 396
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 255 EKLWEALMDGHIDMLSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGV 314
E + + L DG + L DH P +P L+F V + +YG
Sbjct: 289 ETIAKLLKDGVLIALXCDH-PVIP-------------------LEFAT-VQAATAXRYGA 327
Query: 315 TLEQLASWWSERPAKLAGQVSK-GAIAIGNHADLVVW 350
E L + PAK+ G + G+I G ADLVVW
Sbjct: 328 KEEDLLKILTVNPAKILGLEDRIGSIEPGKDADLVVW 364
>pdb|2AQV|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
pdb|2AQV|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant Y137f
Length = 390
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 328
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2AQO|A Chain A, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
pdb|2AQO|B Chain B, Crystal Structure Of E. Coli Isoaspartyl Dipeptidase
Mutant E77q
Length = 390
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 328
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1ONW|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONW|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From E. Coli
pdb|1ONX|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1ONX|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase From
Escherichia Coli Complexed With Aspartate
pdb|1PO9|A Chain A, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1PO9|B Chain B, Crytsal Structure Of Isoaspartyl Dipeptidase
pdb|1POJ|A Chain A, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POJ|B Chain B, Isoaspartyl Dipeptidase With Bound Inhibitor
pdb|1POK|B Chain B, Crystal Structure Of Isoaspartyl Dipeptidase
pdb|1POK|A Chain A, Crystal Structure Of Isoaspartyl Dipeptidase
Length = 390
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 328
LSSD + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSDGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1YBQ|B Chain B, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 328
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|1YBQ|A Chain A, Crystal Structure Of Escherichia Coli Isoaspartyl
Dipeptidase Mutant D285n Complexed With
Beta-Aspartylhistidine
Length = 390
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 269 LSSDHSPTVPELKLLDEGNFLKAWGGISSLQFVLPVTWSYGRKYGVTLEQLASWWSERPA 328
LSS+ + + P DEGN G++ + +L + Y ++ + A
Sbjct: 282 LSSNGNGSQPFFD--DEGNLTHI--GVAGFETLLETVQVLVKDYDFSISDALRPLTSSVA 337
Query: 329 KLAGQVSKGAIAIGNHADLVVWEPEAEFE 357
KG I GN ADL+V PE E
Sbjct: 338 GFLNLTGKGEILPGNDADLLVMTPELRIE 366
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 356
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 357 ELDNDHPVHM 366
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 298 LQFVLPVTWSYGRKYGVTLEQLASWWSERPAKLAGQV-SKGAIAIGNHADLVVWEPEAEF 356
LQF+ P KYG +LE A +W E K+ V S AIA D V + E
Sbjct: 177 LQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA 236
Query: 357 ELDNDHPVHM 366
E+D V M
Sbjct: 237 EVDGQKFVEM 246
>pdb|3GIP|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIP|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc, Acetate
And Formate Ions.
pdb|3GIQ|A Chain A, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate.
pdb|3GIQ|B Chain B, Crystal Structure Of N-Acyl-D-Glutamate Deacylase From
Bordetella Bronchiseptica Complexed With Zinc And
Phosphonate Inhibitor, A Mimic Of The Reaction
Tetrahedral Intermediate
Length = 480
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 314 VTLEQLASWWSERPAKLAGQVSKGAIAIGNHADLVVWEPE 353
+TLEQ + + PA++ G +G + G AD+VV++P+
Sbjct: 395 MTLEQAVARMTALPARVFGFAERGVLQPGAWADVVVFDPD 434
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 41 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 99
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 100 FMC 102
+
Sbjct: 198 HLV 200
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 41 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 99
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 100 FMC 102
+
Sbjct: 198 HLV 200
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 41 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 99
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 100 FMC 102
+
Sbjct: 198 HLV 200
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 41 PLNSDPSTISTET-LKLKVDAAEKRIYVDVGFWGGLVPENAYNASALEALLNAGVLGLKS 99
PL D T+S + L + D AE R + + GG++ + A++ SAL+A+L A G S
Sbjct: 138 PLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFS 197
Query: 100 FMC 102
+
Sbjct: 198 HLV 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,713,321
Number of Sequences: 62578
Number of extensions: 518134
Number of successful extensions: 1341
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 46
length of query: 411
length of database: 14,973,337
effective HSP length: 101
effective length of query: 310
effective length of database: 8,652,959
effective search space: 2682417290
effective search space used: 2682417290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)